BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780127|ref|YP_003064540.1| putative DNA polymerase from
bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62]
         (675 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 674/675 (99%), Positives = 674/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 673/675 (99%), Positives = 673/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE VS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSETVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 673/675 (99%), Positives = 673/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 672/675 (99%), Positives = 672/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
            PLKAEGYEAKRYRK
Sbjct: 661 FPLKAEGYEAKRYRK 675


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 672/675 (99%), Positives = 672/675 (99%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA
Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP
Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES
Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA
Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN
Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD PYFSVGTLCSLMTKNPSWAKG
Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEAKRYRK
Sbjct: 661 LPLKAEGYEAKRYRK 675


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 208/698 (29%), Positives = 309/698 (44%), Gaps = 77/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID+ET S  PL K GV+ YAE     I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DETV   A N++FER+   + LGI +    W C+ + A T GLP SLK+    L  
Sbjct: 61  AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                K+EEGK LI  FC     +           A+  + W+LF EY KRDVE    + 
Sbjct: 121 DRQ--KLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            RL   P+ + E + +++DQ INDRG  +D   V +      + +    E         +
Sbjct: 179 ARLKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQN--LTDL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+ +  +++  +  +L  +      ++++  R   S +++ K 
Sbjct: 237 ENPNSPLQLMDWLHGK-GLSVESLAKSEVTKMLKTATGD--VREVLELRQQLSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +     +D R RG  QFYGA+RTGR++G + Q QNLP+   ++    +T+      E 
Sbjct: 294 MAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFEL 353

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  +     + VVAD A IEARVLAW+AGE W +  F    DI
Sbjct: 354 LDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDI 413

Query: 409 YVTTYAKAFN--TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T ++ F+        + + R  GK   L+ GY G       M               
Sbjct: 414 YCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     AV+  +     + +   WRA +  ++Q W D+  
Sbjct: 460 --------------------------AVESGMKEEELQPLVDLWRASNPHIVQFWWDVDR 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
                V+    +    +  V           + I LPS R L Y+  +   +        
Sbjct: 494 AVKTCVKRRVEVETHGIRCV------YKSGVLFIRLPSGRELAYAKPRIGENRFGGESVT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                 T +  R  T+GGKL ENI Q  +RD+L   MK     G+DIV+ VHDEIV E P
Sbjct: 548 YEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                SV  +CS+M +NP WAKGLPLKA+GYE + YRK
Sbjct: 608 YG-VSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/702 (30%), Positives = 319/702 (45%), Gaps = 76/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L ID+ET S   +   G + Y E     I L AYA++DEPV++ D      +PS++ 
Sbjct: 5   IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER   K       P ++W CT V A T GLPSSL     AL F
Sbjct: 65  YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124

Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            E   KM+EGKALI  FCK       +         + ++ W+ F EYCKRDVE  RE+ 
Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             L        E+ LW LDQ INDRG   DL L+ +  E      ++L +  ++LT    
Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTGLE- 243

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAIL 290
            +      ++ ++    G ++  +++ ++  ++  +          ++  R   + ++I 
Sbjct: 244 -NPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K +T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +    +      + 
Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKF 362

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +             S  +R+  I   G + +V+D + IEARV+AW AGE W++  F+   
Sbjct: 363 QEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTHG 422

Query: 407 DIYVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            IY  + ++ F   I+  K   E R  GK+ ELALGY G      +M             
Sbjct: 423 KIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKS-------- 474

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +       + K+WR  +  + + W D+
Sbjct: 475 ---------------------------------IPEEELPGLVKSWRNANPNITKFWWDV 501

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS------ 578
            +    V++E  +++ +       L        + I LPS R+L Y   K +        
Sbjct: 502 DKAAKKVIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGD 556

Query: 579 -----YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                 +   + Q  R  TYG KL ENIVQA SRD L E M    K GYDIV+ VHDE+V
Sbjct: 557 KITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHDEVV 616

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P     +V  +  LM +   WA GLPLKA+GYE   Y+K
Sbjct: 617 LDIPKDRA-TVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 327/698 (46%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D  PV++ D      +P ++ 
Sbjct: 1   MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q + D  V   A N+ FERI   K  GI +    W CT V +   GLP SL+ A +    
Sbjct: 61  QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTG- 119

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K+ +GK LI  F   CK ++ +         H  + W  F  Y  RDVE    + 
Sbjct: 120 -ADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+ + E + ++LDQ INDRG ++DL+LV K  +   + R++L   + +     +
Sbjct: 179 EKLQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKE--LTDL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + + ++K++L  +       +++  R   + S++ K 
Sbjct: 237 DNPNSVVQMKSWLSEK-GLETDSLDKASVKALLKEAPEH--LSEVLELRQLLAKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV +DGR RG LQFYGA+RTGR++G + Q QNLP+   S+    + +      + 
Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G+ S+ +R+  +   G K +VAD + IEARV+AW+AGE W+ + FA    I
Sbjct: 354 LEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P+++V+K    R  GK+ ELALGY G     K M               
Sbjct: 414 YEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L     + +  AWR  +  +++LW D+  
Sbjct: 460 --------------------------ALDMGLTEEELKPLVYAWRNANPNIVRLWWDVDR 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---- 582
                V E       R+              + I LPS R+L Y   +   +   +    
Sbjct: 494 AVKEAVTERCRTETHRIR------FEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVT 547

Query: 583 -----ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT +  R  +YG K  ENIVQAISRD+LC  M+N  ++G +IV+ VHDE+V E P
Sbjct: 548 YEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                 V  +C LM + P WA GL L+A+G+E   Y+K
Sbjct: 608 LE--ICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 219/705 (31%), Positives = 322/705 (45%), Gaps = 81/705 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L ID+ET S   +   G + Y E     I L AYA++DEPV++ D T+  A+P  ++
Sbjct: 1   MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGLPSSLKNACLA 115
             L D  V+  A N+ FER   K   G+     P  +W CT + A T GLPSSL     A
Sbjct: 61  DALYDPDVIKTAFNANFERSAIK--FGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKA 118

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKRDVEATR 171
           L   E   KM+EGKALI  FCK    +   D        + ++ W+ F EYCKRDVE  R
Sbjct: 119 LKLEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVER 178

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+   L        E+ LW LDQ INDRG   DL L+ +  E      ++L +  +KLT 
Sbjct: 179 EIRNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG 238

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI--TQLAKDLILNRLASSGS 287
               +      ++ ++    G ++  +++ ++  ++  +          ++  R   + +
Sbjct: 239 LE--NPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT 296

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +I K +T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +    +     
Sbjct: 297 SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVRE 356

Query: 348 NRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
            + E             S  +R+  I   G + +V+D + IEARV+AW AGE W++  F+
Sbjct: 357 GKFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFS 416

Query: 404 NGEDIYVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
               IY  + ++ F  PI+  K   E R  GK+ ELALGY G      +M          
Sbjct: 417 THGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKS----- 471

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                               +       + K+WR  +  + + W
Sbjct: 472 ------------------------------------IPEEELPGLVKSWRNANPNITKFW 495

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS--- 578
            D+ +     ++E  +++ +       L        + I LPS R+L Y   K +     
Sbjct: 496 WDVDKAAKKAIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETF 550

Query: 579 --------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                    +   + Q  R  TYG KL ENIVQA SRD L E M    K GYDIV+ VHD
Sbjct: 551 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVHD 610

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V + P     +V  +  LM +   WA GLPLKA+GYE   Y K
Sbjct: 611 EVVLDIPKDRA-TVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 220/700 (31%), Positives = 334/700 (47%), Gaps = 74/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y +     I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGKALI  FCK    +        N     ++ W  F EYCK+DV   RE+ 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L     ++ E  LW LDQ IND G ++D +L+    E   +  +KL ++ +K+T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G ++  +++ ++  IL   +   + + ++  R   S ++I K 
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVR-ILELRKLMSKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      + 
Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G + +V+D + IEARV+AW+AGE W++  F +   I
Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI+ + K  E R  GK+ EL+ GY G      +M +             
Sbjct: 418 YEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK----------- 466

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L     + +  AWR  +  + + W D+ +
Sbjct: 467 -----------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVDK 497

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578
                +++   +  +       +    +   + I LPSSRRL Y   K +          
Sbjct: 498 AAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552

Query: 579 ---YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +   + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+ VHDE+V +
Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 206/699 (29%), Positives = 317/699 (45%), Gaps = 74/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET     + KVG + Y E     I L AYA++DEPV++ D  +   +P  + 
Sbjct: 1   MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++  A N+ FE    KK L   I ++ W CT V +   GLP SL      L F
Sbjct: 61  TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120

Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            E   KM+EGKALI  FCK       +         +  + W++F +Y K+DVE  R + 
Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P ++ E+ LW LDQ INDRG   D++L+ K  E      K+L ++  +LT   +
Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ ++    G ++  +++ ++ +++  S   +  K ++  R   + ++I K 
Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKDEK-VKKILELRQLMAKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            T+  A   DGR+RG LQFYGA+RTGRW+G + Q QNLP+    +    +      + + 
Sbjct: 298 ETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFDK 357

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                       S  +R+  I   G + +VAD + IEARV+AW AGE W++  F N  DI
Sbjct: 358 VEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNGDI 417

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +K F  P++K   +   R  GK+ ELALGY G      +M               
Sbjct: 418 YCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKK----------- 466

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +       + K WR     + + W D+ +
Sbjct: 467 ------------------------------NIPEDELPGLVKDWRDASPHITKFWWDVDK 496

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------CS 578
                ++E  ++          L        + I LPS R+L Y   K +         +
Sbjct: 497 AAKKAIRERTTV-----VLQFGLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDKPIIT 551

Query: 579 YLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           Y      + Q     TYG K+ ENIVQA +RD L   M+     G+ IV+ VHDE++ + 
Sbjct: 552 YEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDELICDV 611

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P     +V  +C +  +   WA GLPLKA+GYE   Y K
Sbjct: 612 PKGK-GTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 205/702 (29%), Positives = 307/702 (43%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LPK GV+ Y E     I L AY+ D +PV++ D      +P +++
Sbjct: 1   MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+TV+  A N+ FERI   + LG      +  + W C+ + A T GLP SL+    
Sbjct: 61  AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  FC+    +  +      R  H    W+ F  Y  RDVE  
Sbjct: 121 VLGLE--KQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +  +L   P+ +   + + +DQ INDRG R+D++LV +   +  + R++L   I    
Sbjct: 179 MGIQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKD-- 236

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    GI+   + +  +  +L  +       D++  R   + S+
Sbjct: 237 MTELENPNSVQQMKQWLSD-NGIETDSLDKKAVAELLKDAPDN--LADVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + + V SDGR RG  QFYGA+RTGR+SG   Q QNLP+    +    +++    
Sbjct: 294 VRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +       D     S  +R+  I        VAD + IEARV+AW AGE W+ + F  
Sbjct: 354 DFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEK 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLNEEELPALVDAWRQANPRIVEFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
            +       V+   + +         L        + I LPS R+L Y   K   +    
Sbjct: 494 AVDRAVMEAVKYKHTTTDYG------LTFSCKSGMLFITLPSGRKLAYVKPKIGTNKFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA +RDILC  MK        IV+ +HDE+V
Sbjct: 548 SCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDELV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 606 IEA--DPKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 212/702 (30%), Positives = 319/702 (45%), Gaps = 81/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  Y+ D   VK+ D      +P +++
Sbjct: 1   MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D++V+  A N+ FERI   K LG+     +  K W CT + A T GLP SL+    
Sbjct: 61  NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170
            L F     K+ +GK LI  FC     +  +        +H  + W++F  Y KRDVE  
Sbjct: 121 VLGFK--KQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +  +L   P+S  E   + LDQ IND G  +D+D V +      + + +  +   +LT
Sbjct: 179 MAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                +      L+ +L L  G+    +S+  +  +L  S+      + +  R   + S+
Sbjct: 239 GLE--NPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDG--EIHEALSIRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K  ++   V SD R RG +QFYGA+RTGR+SG + Q QNLP+    +    +++    
Sbjct: 294 VKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                         + S+ +R+  I   G + +VAD + IEARV+AW+AGE W+I  FA 
Sbjct: 354 NFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAG 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ FN P+ K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L+    + +  AWR  +  +  LW 
Sbjct: 464 ------------------------------AIQMGLVEDELKPIVDAWRNSNPNITSLWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
            +             +  ++   +  + +      + I LPS RRL Y       +    
Sbjct: 494 RIDRAVK------TVVKTKQPIEIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQAISRDIL E M     + + IV+ VHDE+V
Sbjct: 548 ESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVV 607

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E P     SV  +C +M++ P+WAKGL L A+GYE + Y+K
Sbjct: 608 IEAP-NKVSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 209/698 (29%), Positives = 324/698 (46%), Gaps = 80/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YA      + L  Y  D   V++ D      +P +++
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V   A N++FER+     LG  +  + W CT V + T GLP SL++A  AL  
Sbjct: 64  SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SEHLTKMEEGKALIARFCK---GSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                K+ EGK LI  FC     +  +      R  +  + W+ F  Y  RDVE   ++ 
Sbjct: 124 E--KQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQ 181

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+ D   + + LDQ INDRG  +D++LV +   + A+ R++L + + +LT   +
Sbjct: 182 KRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELTG--L 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + +  +  ++  +   +  K ++  R   + S++ K 
Sbjct: 240 DNPNSVQQMKQWLADH-GLETDTLGKKVVAELVRSA--PEPLKTVLSLRQQLAKSSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV +DGR  G  QFYGA+RTGR+SG + Q QNLP+   S+    + +      E 
Sbjct: 297 AAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEA 356

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 D     S  +R+  +  +G+K +VAD + IEARV+AW AGE W++K F +G+DI
Sbjct: 357 ISMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDI 416

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F+ P++K   +   R  GK+ ELALGY G     K+M               
Sbjct: 417 YSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A++  L     + +  AWR  +  + Q W D+  
Sbjct: 463 --------------------------ALEMGLAEEELQPLVDAWRTSNPMITQFWWDVDR 496

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--------DCS 578
                V++   +          L        + I LPS RRL Y   +           +
Sbjct: 497 AVKECVKKRVPME------SHGLHFDYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVT 550

Query: 579 YLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
           Y+  +   +  R  +YG K  ENIVQ  +RDILC  M+        IV  VHDEI+ E  
Sbjct: 551 YMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTL--RNCAIVAHVHDEIIIEA- 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                S+  +C  M + PSWAKGL L+A+GYE + Y+K
Sbjct: 608 -DRRMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 220/700 (31%), Positives = 331/700 (47%), Gaps = 74/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y +     I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGKALI  FCK    +        N     ++ W  F EYCK+DV   RE+ 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L     ++ E  LW LDQ IND G ++D +L+    E   +  +KL ++ +K+T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L      ++  +++ ++  IL   +   + + L   R   S ++I K 
Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDENVVRTL-ELRKLMSKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      + 
Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G + +V+D + IEARV+AW+AGE W++  F +   I
Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417

Query: 409 YVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI+  K   E R  GK+ EL+ GY G      +M +             
Sbjct: 418 YEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK----------- 466

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L     + +  AWR  +  + + W D+ +
Sbjct: 467 -----------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVDK 497

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578
                +++   +  +       +    +   + I LPSSRRL Y   K +          
Sbjct: 498 AAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552

Query: 579 ---YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +   + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+ VHDE+V +
Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 203/698 (29%), Positives = 314/698 (44%), Gaps = 80/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YA      + L  YA D   V + D      +P + +
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D +V     N++ ER+     LG  +  + W CT V + T GLP SL++A  AL  
Sbjct: 64  SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K+ EGK LI  FC     +  +      R  H  + W+ F  Y  RDVE   ++ 
Sbjct: 124 E--KQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQ 181

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+ D   + + LDQ INDRG  +D++LV +   +  + R++L   + +     +
Sbjct: 182 KRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRE--LTEL 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + +  +  ++  +   +  ++++  R   + S++ K 
Sbjct: 240 ENPNSAQQMKQWLADH-GLETDTLGKKAVAELVKTA--PEPLREVLSLRQQLAKSSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV +D R  G  QFYGA+RTGR+SG + Q QNLP+    +    + +      E 
Sbjct: 297 TAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEA 356

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 D     S  +R+  +  +G+K +VAD + IEARV+AW AGE W++K F +G DI
Sbjct: 357 LSVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDI 416

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F+ P++K   +   R  GK+ ELALGY G     K+M               
Sbjct: 417 YCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A++  L     + +  AWR  +  + Q W D+  
Sbjct: 463 --------------------------ALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDR 496

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--------DCS 578
                +++              L        + I LPS RRL Y   +           +
Sbjct: 497 AVKDCIRQRIPTET------HGLRFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVT 550

Query: 579 YLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
           Y+  + T +  R  +YG K  ENIVQ  +RDILC  M+        IV  VHDEI+ E  
Sbjct: 551 YMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQTL--KNCSIVAHVHDEIIIEA- 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                SV  +C  M + P WAKGL L+A+GYE + Y+K
Sbjct: 608 -DRRMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 318/700 (45%), Gaps = 81/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ Y+E     I L AY+ D  PV++ D      +P+++L
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L DETV+  A N+ FER+   + LG+D  +  + W CT V   T GLP SL      L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K+ EGK LI  FC     +  +        +H    W  F  Y  RDVE    
Sbjct: 121 GL--DKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ D     + LDQ INDRG  ID D V    +L    +  L++ + +LT  
Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTGL 238

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +R +L    G++   + +  +  +L       L + L+L R   + S++ 
Sbjct: 239 E--NPNSVLQMRGWLLDH-GLETESLGKKAVAELLEQPIDENLKQVLVL-RQQLAKSSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +     SD R RG  QFYGA+RTGR++G   Q QNLP+   S+    +++   +  
Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNF 354

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       +   + S+ +R+  +   G K +V+D + IEARV+AW++GE W+ + F NG 
Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M             
Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM------------- 461

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  L     + +  +WR  +  + +LW  +
Sbjct: 462 ---------------------------DALEMGLTEDELQPLVNSWRDSNINITELWWAV 494

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
            +     V+E  S S         +        + I L S R+LVY   K   +      
Sbjct: 495 DKAVKTCVKERRSTST------HGIKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                  AT +  R  +YG K  ENIVQAI+RDILC  M+N     Y IV  VHDE++ E
Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENL--RKYRIVGHVHDEVIIE 606

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P      V  +C LM++ P WA+GL L A+GYE + Y+K
Sbjct: 607 VPMES--KVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 210/702 (29%), Positives = 314/702 (44%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S +PL K GV+ Y E     I L AY+ D +PV++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DE V+  A N+ FERI   + LG      +  + W C+ V A T GLP SL+    
Sbjct: 61  LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  FC+    +  +      R  H    W +F +Y  RDVE  
Sbjct: 121 VLGLE--KQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + +RL   P+     D + +DQ INDRG R+D++LV    E+  + R KL E + +  
Sbjct: 179 MGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKE-- 236

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L  +        ++  R   + S+
Sbjct: 237 ITELENPNSVQQMKAWLSD-NGLETDTLGKKAVAELLKSA--PPKLSQVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + + V +DGR RG  QFYGA+RTGR+SG   Q QNLP+   S+    +++    
Sbjct: 294 VRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             E       D     S  +R+  I   G + +VAD + IEAR++AW AGE W+   FA 
Sbjct: 354 NFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLTEDELPPLVDAWRQSNPNIVKFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           ++       V+   + S         L        + I LPS R+L Y   K   +    
Sbjct: 494 NVDHAVMEAVKFKHTTSEYG------LTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    +T +  R  +YG K  ENIVQA +RDILC  M+        IV+ +HDE+V
Sbjct: 548 QCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQTL--RCCSIVMHIHDEVV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E   +   S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 606 IEADPS--MSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 492/675 (72%), Positives = 567/675 (84%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T    MPSDLL++
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            LTKMEEGKALIARFCKGSI+  PYD  RANHVQAWQLFGEYCKRDVEATREL+KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER++LDE+  +LT G+I S+R+T  
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  YLFL TG+DL DM+E T+ + LS  +I QL+K ++ NRL+SS SAILKLNTLS AVS
Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D RLRGTLQF+GASRTGRWSGCVFQPQNLPRQ  + + + + I+ L+ G  I DPL  A
Sbjct: 301 PDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFA 360

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIAS GKKL+VADLAGIEARVLAW+AGE WK+ AFANGEDIY T Y+KAFN P
Sbjct: 361 SDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVP 420

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+K+QRAIGKVMELALGYQGGA+VF+ MAS  GL+LQQFS+++K+T+T EDWEQA+ 
Sbjct: 421 LSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQR 480

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             LWMQ+ +PEFAV D  IGTACELVK+AWRAKH+GV+QLWKD  E F CV+++G SISA
Sbjct: 481 RCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 540

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRV  VP L+M++  ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN
Sbjct: 541 RRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 600

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDIL  GM NATK GYDIVLTVHDEIV E PDTP FS   LCSLMT+NP+WAKG
Sbjct: 601 IVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKG 660

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEA RYRK
Sbjct: 661 LPLKAEGYEAVRYRK 675


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 210/699 (30%), Positives = 323/699 (46%), Gaps = 75/699 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S   L K GV+ Y E     I L AYA+DDEP+ + D  +   +P  + +
Sbjct: 3   KILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTK 62

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D  V+  A+N+ FER    K     +P ++W CTSV A T GLP +L      L   
Sbjct: 63  DLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLD 122

Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175
               K   GK LI  F   CK +  +        +H    W+ F +YCK+DV   R + K
Sbjct: 123 AQ--KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRK 180

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           ++   P+ + E  LW LDQ IND G R+D  LV +  +   Q   +LD +  +LT   + 
Sbjct: 181 KIEKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG--LD 238

Query: 234 SSRQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           +   T  L ++L    G+ + +   +  +  +L  +   +    ++  R   S ++  K 
Sbjct: 239 NPNSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A+ SD R RG LQF GA+RT RW+G + Q QNLP+ +  +  + + +    + E 
Sbjct: 298 EAMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEA 357

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                  P  + S  +R+  I S+G + +V+D + IEARV+AW+AGE W++K F +   I
Sbjct: 358 IELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKI 417

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F+ PI++++K    R  GK+ ELALGY G     + M               
Sbjct: 418 YEASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMG-------------- 463

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+K  L       +  AWR  +  +++LW D+ +
Sbjct: 464 --------------------------ALKMGLDADELPDLVTAWRNSNPKIVKLWWDVDK 497

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E   +  +       +        + I LPS R+L Y   K            
Sbjct: 498 AAMTAVREHMPVRIQYG-----ITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALT 552

Query: 585 --------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                       R  TYG KL ENIVQA++RD L   M      GYDI + VHDE++ + 
Sbjct: 553 YEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDV 612

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P+T   ++  +  +M++   WA GLPL+A+GYE + Y+K
Sbjct: 613 PNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 210/696 (30%), Positives = 329/696 (47%), Gaps = 77/696 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            L IDIET S   L K GV+AYA+     + L AY++D    ++ D  +   +P ++   
Sbjct: 4   ILEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAA 63

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           + D+ VM  A N+ FER    K  G  +  + W C++V A    LP SL+     L   +
Sbjct: 64  IFDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQ 123

Query: 121 HLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKR 176
              KM+EGK LI  F   CK +  +         H  + W+LF  YC RDV+  +E+ ++
Sbjct: 124 Q--KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRK 181

Query: 177 L--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           L   P+ + E +L+ LDQ INDRG  +D +LV +        +  + +   +LT     +
Sbjct: 182 LQHFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTGLE--N 239

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                 ++ +L    G+++  +S+ T+  ++  S+     ++L+  RL  + +++ K   
Sbjct: 240 PNSVAQIKSWLGE-NGVEMESLSKKTVAGLIEESDG--EVQELLRLRLLMAKTSVKKYEA 296

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET-- 352
           +  +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+    +  + + +    R E   
Sbjct: 297 MERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVE 356

Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                   + S+ +R+  I   G + VVAD + IEARVLAW++GE W+++ FA+   IY 
Sbjct: 357 LLYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIYE 416

Query: 411 TTYAKAFNTPIDKVSKEQR--AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            + +  F+ PI++V+K       GK+ ELALGY G      +M                 
Sbjct: 417 ASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMG---------------- 460

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   A+   L+      +  AWR+ +  + Q W D+    
Sbjct: 461 ------------------------ALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAA 496

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN------- 581
              V E     A R      +V       + + LPS R+L Y   +   +          
Sbjct: 497 VKAVTEKKKTRAGR------IVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYE 550

Query: 582 --TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                 +  R  TYG KL ENIVQ  +RD+L E M    + GY IV+  HDEI++E P+ 
Sbjct: 551 GIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVPEG 610

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              SV  +C++M   P WA GLPL+A+GYE   Y+K
Sbjct: 611 T-GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/700 (31%), Positives = 316/700 (45%), Gaps = 76/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L IDIET S   L K GV+AYAE     I L  YA+DDEPV+L D      +P ++L
Sbjct: 1   MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER    K     +P ++W CT V A T GLP  L +    L  
Sbjct: 61  NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
            +   K   GKALI  F   CK +  +         +    W  F  YCK+DV   R++ 
Sbjct: 121 KQQ--KDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K L   P+ + E  LW LDQ IND G  +D  LV        Q + KL     KLT   +
Sbjct: 179 KTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            + +    L+ +L    G+++  +++ ++  +L  +  +   K ++  R   + +++ K 
Sbjct: 237 DNPKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESST-VKQMLELRQEMAKTSVKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A   DGR+RG LQFYGA+RTGRW+G + Q QNLPR    +    + +      E 
Sbjct: 296 LAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEM 355

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  +   G + +VAD + IEARV+AW+A E W++  F     I
Sbjct: 356 LELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F+ PI++++K    R  GKV ELALGYQGG      M               
Sbjct: 416 YEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG-------------- 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+K+ L       + K WR     +++ W D   
Sbjct: 462 --------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEA 495

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580
                V+E  ++          +        + I LPS RRL Y   +   +        
Sbjct: 496 AAIKAVKEKTTVELH-----HGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPAL 550

Query: 581 -----NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T Q  R  TYGGKL ENIVQA++RD L E +      GY  V+ VHDE V E
Sbjct: 551 TYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVME 610

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P     S+   C +M +   WA GLP++A+G+E+  Y+K
Sbjct: 611 MPHG-VGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/702 (29%), Positives = 316/702 (45%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S +PL K GV+ Y E     I L AY+ D + V++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L +ETV+  A N+ FERI   + LG      + S+ W C+ + A T GLP SL+    
Sbjct: 61  LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  FC+    +  +      R  H    W +F +Y  RDVE  
Sbjct: 121 VLGLE--KQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + +RL   P+     D + +DQ INDRG R+D++LV    E+  + R +L E + +  
Sbjct: 179 MGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKE-- 236

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L  ++       ++  R   + S+
Sbjct: 237 ITELENPNSVQQMKAWLSD-NGLETDTLGKKAVTELLKSASPK--LSQVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + + V +DGR RG  QFYGA+RTGR+SG   Q QNLP+    +    +++    
Sbjct: 294 VRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             E       D     S  +R+  I   G + +VAD + IEARV+AW AGE W+ + FA 
Sbjct: 354 NFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLTEEELPPLVDAWRQSNPNIVKFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           ++       V+   + S+        L        + I LPS R+L Y   K   +    
Sbjct: 494 NVDHAVMEAVKFKHTTSSYG------LTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA +RDILC  MK        IV+ +HDE+V
Sbjct: 548 QCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDEVV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + P WAKGL L+A+GY    Y+K
Sbjct: 606 IEA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 203/718 (28%), Positives = 308/718 (42%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  YA D  PV++ D  +  ++P ++L
Sbjct: 1   MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98
             L D+TV   A N+ FER+   + L                       +    W C+ V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCT-RANHVQ 154
            +   GLP SL+     LN      KM+EG+ LI  FC   K +  +         + + 
Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCIPCKETKANGGRTRNLPQHALD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W LF  Y KRDVE    + +RL   P+     + + LDQ INDRG  IDL+L  +   L
Sbjct: 179 KWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVAL 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            A+ R+ L   + + T     +      +  +L    G+    + +  ++ +L  +    
Sbjct: 239 DAKSRESLMAALKERTGLE--NPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEP- 294

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++L R   + S++ K   +      DGR RG  QFYGA+RTGR++G   Q QNLP+
Sbjct: 295 -LRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E           + S  +R+  +   G K VV+D + IEARV
Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAK 446
           ++W+AGE WK + FA G+DIY +T ++ F  P     ++   R  GK+ ELA GY G   
Sbjct: 414 ISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A+   +       +
Sbjct: 474 ALKAMG----------------------------------------ALDMGIPEEELGNL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            ++WR+ +  ++  W  +       +++   +       V  +        + I LPS R
Sbjct: 494 VQSWRSANPHIVDFWWQVDGAVKTTIKQRIPV------WVNNIRFFCQSGMLFIELPSGR 547

Query: 567 RLVYSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           RL Y   +   +             AT +  +  +YG K  ENIVQ ISRDILC  M+  
Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQTL 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                 IV  VHDE++ E P     SV  +C  M + P WA+GL L+A+GY  + Y+K
Sbjct: 608 --RCCAIVGHVHDELIIECPKDT--SVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/702 (29%), Positives = 313/702 (44%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   V++ D     A+PS ++
Sbjct: 1   MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V   A N+ FERI   K LG+     +    W CT V +   GLP SL+    
Sbjct: 61  DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120

Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  F   CK ++ +         +    W  F  Y  RDVE  
Sbjct: 121 VLGLE--KQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + ++L   P+ +G    + LDQ INDRG  +D+DLV +  E+  + R KL   I +  
Sbjct: 179 MAIQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRE-- 236

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L  ++       ++  R + + S+
Sbjct: 237 LTELENPNSVVQMKQWLSDH-GLETDTLGKKAVVELLKTASEP--LGKVLELRQSLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +   V +DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    +++    
Sbjct: 294 VKKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                         + S+ +R+  +   G K +VAD + IEARV+AW+AGE W+ + F +
Sbjct: 354 NFAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFES 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F+ P++K   +   R  GK+ ELALGY G     K M +      ++ 
Sbjct: 414 GGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 473

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                                    + +  AWR+ +  +++LW 
Sbjct: 474 L----------------------------------------QPLVSAWRSSNPKIVRLWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+       V+E  +     +                I LPS RRL Y   +   +   +
Sbjct: 494 DIDRAAMKAVRERTTTETHGIR------FSYQSGMFFITLPSGRRLAYVKPRIGQNRFGS 547

Query: 583 ---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                       +  R  +YG KLTENIVQA SRDILC  M+N       IV+ VHDEIV
Sbjct: 548 DCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNL--RHCSIVMHVHDEIV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E       S   +C  M + P WAKGL L+A+GYE   Y+K
Sbjct: 606 IEA--DRRMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 218/700 (31%), Positives = 326/700 (46%), Gaps = 74/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + KVGV+ Y +     I L AYA+D+E VK+ D      +P +++
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A N+ FER    K L I++    W CT + A T GLP SL +   AL F
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGKALI  FCK    +        N     ++ W  F EYCK+DV   RE+ 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L     ++ E  LW LDQ IND G ++D +L+    E   +  +KL ++ +K+T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G ++  +++ ++  IL   +   + + ++  R   S ++I K 
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVR-ILELRKLMSKTSIKKY 297

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +  A  +D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      + 
Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G + +V+D + IEARV+AW AGE W++  F +   I
Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGKI 417

Query: 409 YVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  PI+  K     R  GK+ ELALGY G      +M +   + L +     
Sbjct: 418 YEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIK-MGLDEEELQP 476

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
             T+                                                  W D+ +
Sbjct: 477 LVTTWRNANPNITKF---------------------------------------WWDVDK 497

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578
                +++   +  +       +    +   + I LPS RRL Y   K +          
Sbjct: 498 AAKKAIKDRTIVKLQ-----HGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDKI 552

Query: 579 ---YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +   + Q  R  TYG KL ENIVQA +RD L E M N T  GY IV+ VHDE+V +
Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  + S+M K  SWAKGLPLKA+GYE   Y+K
Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 206/700 (29%), Positives = 314/700 (44%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ + IDIET S   L K GV+ YAE     I L  Y+ D   V++ D      +P++++
Sbjct: 1   MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D +V   A N++FER+   K L +   +    W C+ V +   GLP SL+     L
Sbjct: 61  NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                  K+ EGK LI  FC        +         + +  W+ F  Y  RDVEA   
Sbjct: 121 GLE--KQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMS 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +RL   P+ +     + LDQ INDRG  ID+  V +  ++  Q R+KL   +  +T+ 
Sbjct: 179 IQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITNL 238

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      ++ +L    G++   + +  +  +L  +   +    ++  R   + S+I 
Sbjct: 239 E--NPNSIQQMKEWLAD-NGLETDSLGKKAVAEMLKTA--PEPLGTVLELRQQLAKSSIK 293

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV +DGR RG  QFYGA+RTGR+SG + Q QNLP+    +    + +      
Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +           + S+ +R+  +   G K +VAD + IEARV+AW+AGE W+I  F NG 
Sbjct: 354 DALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ FN P++K   +   R  GK+ ELALGY G     K+M             
Sbjct: 414 DIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  +     + +  AWR  +  + +LW D+
Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
                  V++              +        + IVLPS RRL Y   +   +      
Sbjct: 494 DHAVKTCVKQKIPTET------HGIKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGES 547

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAISRDILC  M+        IV  VHDEI+ E
Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIE 605

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+ T+C  M + P+WA GL L A+GYE + Y+K
Sbjct: 606 A--DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS- 119

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 120 -SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658

Query: 659 KGLPLKAEGYEAKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYESKRYRK 675


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/700 (28%), Positives = 308/700 (44%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ + IDIET S   L K GV+ YAE     I L  Y+ D   V++ D      +P +++
Sbjct: 1   MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D++V   A N++FER+   K L +   +    W C+ + +   GLP SL+     L
Sbjct: 61  NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                  K+ EGK LI  FC        +         + +  W+ F  Y  RDVEA   
Sbjct: 121 GLE--KQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMS 178

Query: 173 LFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +R       +   + + LDQ INDRG  ID+  V +   +    R+KL   +  +T+ 
Sbjct: 179 IQQRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITNL 238

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      ++ +L    G++   + +  +  +L  +   +    ++  R   + S++ 
Sbjct: 239 E--NPNSVQQMKDWLAD-NGLETDTLGKKAVAEMLKTA--PEPLGTVLELRQQLAKSSVK 293

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV +DGR RG  QFYGA+RTGR+SG + Q QNLP+    +    + +      
Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +           + S+ +R+  I   G K +VAD + IEARV+AW+AGE W+I  F NG 
Sbjct: 354 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ FN P++K   +   R  GK+ ELALGY G     K+M             
Sbjct: 414 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  +     + +  AWR  +  + +LW D+
Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
                  V++              +        + I LPS RRL Y   +   +      
Sbjct: 494 DRAVKTCVKQKTPTET------HGIKFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGES 547

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAISRDILC  M+        IV  VHDEI+ E
Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIE 605

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  +C  M K P+WA GL L A+GYE + Y+K
Sbjct: 606 ADMGT--SLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/700 (32%), Positives = 330/700 (47%), Gaps = 77/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY+E     I L AYA DDE V++ D      +P+++L
Sbjct: 1   MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + + D TV+  A+N+ FER    K   I +P ++W CTSV A   GLP  L      L  
Sbjct: 61  KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174
                KM+EGKALI  F   CK +  +         +    W  F +YCK+DVE  RE+ 
Sbjct: 121 QGQ--KMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   PL   E++LW LDQ IND G  ID +LV    +     + +L E+   +    +
Sbjct: 179 KKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEA--VRLTGL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L L  G+++  +++  +++++S        K L+  R A S +++ K 
Sbjct: 237 ENPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVENP-EVKRLLELRRAMSKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V SD R+RG LQFYGASRTGRW+G + Q  NLPR    +  + + +    + E 
Sbjct: 295 EAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEA 354

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G + VVAD + IEARV+AW+AGE W++  F +   I
Sbjct: 355 LEVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  PI+ + K    R  GK+ ELALGY G       M               
Sbjct: 415 YEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A++  L       +  AWR  +  +++LW  +  
Sbjct: 461 --------------------------ALEMGLTEDELPELVSAWREANPKIVKLWWGIEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E   +  +       L     K  + I LPS R L Y   K            
Sbjct: 495 AAIKAVKEKAVVKMQ-----HGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQL 549

Query: 578 SYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           +Y  T   + Q  R  TYGGKLTENI+QAI+RD L   M    + GY I   VHDE++ +
Sbjct: 550 TYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILD 609

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P     S+  + ++M ++  WA GLPL A+ +E   Y+K
Sbjct: 610 VPI-ATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/718 (29%), Positives = 319/718 (44%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  YA D   V++ D  +   +P +++
Sbjct: 1   MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKT---LGID-----------------IPSKRWICTSV 98
             L D+ V   A N+ FER+   +    LG+                  +  + W C+ V
Sbjct: 61  DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQ 154
            A T GLP SLK     L   +   KM+EGKALI  F   C  +  +         H  +
Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQ--KMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPE 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W+ F  Y KRDVE    + +RL   P+ D   D + +DQ INDRG R+D+DLV K  E+
Sbjct: 179 KWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L   +       + +      ++ +L    G++   + +  +  ++  +    
Sbjct: 239 DTRSRTELTTAMKD--ITELDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKTA--PS 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++  R   + S++ K  T+  AV  DGR RG   FYGA+RTGRW+G + Q QNLP+
Sbjct: 294 ELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      +       D     S  +R+  I  +G +L V+D + IEARV
Sbjct: 354 NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446
           +AW AGE W+ K FA+G DIY  + ++ F+ P++K   +   R  GK+ ELALGY G   
Sbjct: 414 IAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR  +  +++ W D+       V+   + S+        L        + I LPS R
Sbjct: 494 VDAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYG------LTFSCRSGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +             AT +  R  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +IV+ +HDE+V E    P+ S+  LC  M + P WA+GL L+A+GY    Y+K
Sbjct: 608 --RNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTTPFYKK 661


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/700 (29%), Positives = 321/700 (45%), Gaps = 81/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIE+ S   + K G + Y+E     I L AY+ D +PV++ D  +   +P D++
Sbjct: 1   MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + L DETV+  A N+ FER+   + LG++  +  + W CT V A T GLP SL      L
Sbjct: 61  KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K+ EGK L+  FC     +  +         H +  W+ F  Y  RDVE    
Sbjct: 121 GL--DKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P++    + + LDQ INDRG  ID+ L      L    + +++E + KLT  
Sbjct: 179 IQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTGL 238

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +R +L    G+++  + +  +K ++  +N  +L K+++L R   + S++ 
Sbjct: 239 E--NPNSVLQMRSWLSQH-GLEVESLGKAAVKELIEQTNDDKL-KEVLLLRQQLAKSSVR 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +      D R RG  QFYGA+RTGR++G   Q QNLP+   S+    + +      
Sbjct: 295 KYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEY 354

Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       +   + S+ +R+  I   G K +V+D + IEARV+AW+AGE W+ + F NG 
Sbjct: 355 ELLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGG 414

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ F  P++K   +   R  GK+ ELALGY G       M             
Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMG------------ 462

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A+   L     + +  +WR  +  + +LW D+
Sbjct: 463 ----------------------------ALNMGLTEDELQPLVASWRETNPAITKLWWDI 494

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA- 583
                  V  G             +        + I L S RRL Y   +   +    A 
Sbjct: 495 DSAAKGCVSVGAKTET------HGITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAA 548

Query: 584 --------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQA++RDILC  M+N     Y IV  VHDE++ E
Sbjct: 549 VTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNL--KDYRIVGHVHDEVIIE 606

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            P     +V  + S+M++ P+WAKGL L A+GYE   Y+K
Sbjct: 607 VPKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 499/675 (73%), Positives = 564/675 (83%), Gaps = 2/675 (0%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T    MPSDLL++
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            LTKMEEGKALIARFCKGSI+  PYD  RANHVQAWQLFGEYCKRDVEATREL+KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER+KLDE++  LT G+I SSR+T  
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L  YLFL  G+DL DM+E T+ + LS  NITQ AKD++ NRL+SS SAILKLNTLS AVS
Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVS 300

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            D RLRGTLQFYGASRTGRWSGCVFQPQNLPR   S E + + I++ N      DPL  A
Sbjct: 301 PDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSN--FPSDDPLRFA 358

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           SDCVRSCIIAS GKKLVVADLAGIEARVLAWIAGE WK+ AFANGEDIY T Y+KAFN P
Sbjct: 359 SDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIP 418

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+K+QRAIGKVMELALGYQGGA+VF+TMAS+ GLDL+QFS+++K T+T +DWEQA+ 
Sbjct: 419 LSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQR 478

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             LWMQ+ YPEFAV D  IGTACELVK AWRAKH+GV+QLWKD  E F CV+++G SISA
Sbjct: 479 RCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 538

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           RRVA VP L+M++  ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN
Sbjct: 539 RRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 598

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
           IVQAISRDIL  GM NAT+ GYDIVLTVHDEIV ETPDTP FS   LC LMT+NP WAKG
Sbjct: 599 IVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKG 658

Query: 661 LPLKAEGYEAKRYRK 675
           LPLKAEGYEA RYRK
Sbjct: 659 LPLKAEGYEALRYRK 673


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 219/698 (31%), Positives = 332/698 (47%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M KL ID+ET S   L K GV+ YAE     I L AY+ +D  VK+ D      +P ++L
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DE V   A N+ FER+   + LG  +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                KM EGKALI  F   CK +  +       ++H ++ W  F EY +RDVE    + 
Sbjct: 121 --DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+S  E + + +DQ INDRG  ID  LV    +     R++  +  ++LT    
Sbjct: 179 KKLSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +++  ++S L ++      K+++  R   S S++ K 
Sbjct: 238 -NPNSPLQLKEWLNKK-GLEIDSLAKKDVESALKNTEGD--IKEVLELRQELSKSSVRKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + +      D R RG +QFYGA+RTGR+SG + Q QNL R    +  L +++      ET
Sbjct: 294 DAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                  P  + S  +R+  IA  G + +++D + IEARVLAW+AGE W + AF NGEDI
Sbjct: 354 MEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T ++ F  P++K   +   R  GK+  LA GYQG     K M               
Sbjct: 414 YCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                      ++  L     + +  +WR  +  ++ LW D+  
Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
               VV+       R       LV+   K  + I LPS RRL Y   K   +     +  
Sbjct: 494 VVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIV 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                  ++  +  +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V E+ 
Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIESD 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +       +  +M+  PSWA GL L A+G+E++ Y+K
Sbjct: 608 SSSIE---EINQIMSLVPSWAPGLILDADGFESEFYKK 642


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 202/718 (28%), Positives = 297/718 (41%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ YAE     I L  YA D   V++ D      +P D+L
Sbjct: 1   MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98
             L DE+V   A N+ FER+   + L                       +    W C+ +
Sbjct: 61  DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154
            +   GLP SL+ A   L       KM+EGK LI  FC    ++            +   
Sbjct: 121 WSAYMGLPLSLEGAGAVLKL--DSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W LF  Y KRDVE    + +RL   P+ +   D + LDQ INDRG  ID  L      +
Sbjct: 179 KWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVI 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            A+ R  L   +   T     +      +  +L    G+    + +  ++ +L  +    
Sbjct: 239 DARSRDSLMAVLKGKTGLE--NPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP- 294

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++L R   + S++ K   +      D R RG  QFYGA+RTGR++G   Q QNLP+
Sbjct: 295 -LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E           + S  +R+  +   G K VV+D + IEARV
Sbjct: 354 NHLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446
           L+W+AGE W++  FA   DIY  + +  F  P++K   +   R  GK+ ELALGY G   
Sbjct: 414 LSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A+   L       +
Sbjct: 474 ALKAMG----------------------------------------ALDMGLTENELYPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            ++WR+ +  ++  W  +       ++E   + A        +        + I LPS R
Sbjct: 494 VQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRA------GCIRFLCQSGMLFIQLPSGR 547

Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           RL Y   +   +             AT +  R  +YG K  ENIVQ ISRDILC  M+  
Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAMQTL 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                 IV  VHDE++ E       SV  +C  M + P WA+GL L+A+GYE + Y+K
Sbjct: 608 --RCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQK 661


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/700 (28%), Positives = 311/700 (44%), Gaps = 82/700 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           ++ L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D      +P +++
Sbjct: 4   INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D++V   A N++FER+   K L +   +    W C+ V +   GLP SL+     L
Sbjct: 64  NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123

Query: 117 NFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                  K+ EGK LI  FC        +         + +  W+ F  Y  RDVE+   
Sbjct: 124 GLE--KQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEML 181

Query: 173 LFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +RL      +     + LDQ INDRG  ID+  V +  E+    R+KL   +  +T+ 
Sbjct: 182 IQQRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITNL 241

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      ++ +L    G++   + +  +  +L  +   +    ++  R   + S++ 
Sbjct: 242 E--NPNSVQQMKDWLAD-NGLETDSLGKKVVAEMLKTA--PEPLGTVLELRQQLAKSSVK 296

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  AV SDGR RG  QFYGA+RTGR+SG + Q QNLP+    +    + +      
Sbjct: 297 KYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 356

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +           + S+ +R+  I   G K +VAD + IEARV+AW+AGE W++  F  G 
Sbjct: 357 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGG 416

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ FN P++K   +   R  GK+ ELALGY G     K+M             
Sbjct: 417 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMG------------ 464

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  +     + +  AWR  +  + +LW D+
Sbjct: 465 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 496

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT-- 582
                  V++    +         +        + IVLPS RRL Y   +   +   +  
Sbjct: 497 DRAVKTCVKQKTPTAT------HGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550

Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T +  R  +YG K  ENIVQAISRDILC  M+        IV  VHDEI+ E
Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIE 608

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  S+  +C  M K P+WA GL L A+GYE + Y+K
Sbjct: 609 ADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 192/698 (27%), Positives = 300/698 (42%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + G + YA+     + L  YA D  PVK+ D T+   +PS ++
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++    P+   E + + +DQ INDRG RID  LV    +   +   +  +         +
Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQ--TSQQLTGL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G++   +++ ++  +L  +  T     ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  DG + G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G    VAD + +EARV+AW++GE+W+  AFA  EDI
Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P     ++ E R  GK+ ELALGY G     K M +             
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK----------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L       + + WR     ++Q W D+ +
Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580
                ++     +         +        + + L S R L Y   K   +        
Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547

Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N    +  R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE V + P
Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 608 TDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 211/696 (30%), Positives = 332/696 (47%), Gaps = 76/696 (10%)

Query: 9   ETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           ET S   L   GV+ Y E     I L AYA DDEPVK+ D      +PS++L  + +  +
Sbjct: 2   ETYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPAI 61

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
           +  AHN++FER+   + LG  + + +W C+ + A   GLP+SLK+    L  SE   KM 
Sbjct: 62  IKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMR 121

Query: 127 EGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IPL 180
            GK LI+ FCK       +      T A+  + WQLF +YC RDVE  RE+  +L   P+
Sbjct: 122 IGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPI 181

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E +LW  DQ +ND G RID+++V  +     +  ++L  +  ++T+G     ++   
Sbjct: 182 PASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNG--IGPKKIAQ 239

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           L+ ++       +  + +  +  +L  S+I+   + ++  R  S  ++I K   +  +V 
Sbjct: 240 LKEWICRKEDRSIESLDKDAVIELLKDSSISPETRRVLQIRQESGKTSITKYAAIQRSVC 299

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           +D RL G LQFYGA+RTGRW+G +FQPQNLPR   ++  L + +      E++    G  
Sbjct: 300 NDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGSY 359

Query: 361 SD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
           +      +R+ +I  NG    +AD + IEAR+ AW   E+W+ + FA    IY  + A+ 
Sbjct: 360 NQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQM 419

Query: 417 FNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           F+ PI+ V+K  + R  GKV ELALGY GG    + M                       
Sbjct: 420 FHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMG---------------------- 457

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                  L     + +   WR     + ++W  + +     V+E
Sbjct: 458 ------------------GADMGLSEDEMQDIVNKWRLASPNIKKMWYRVQDAAYTAVRE 499

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTA---- 583
                 +RV+ V  +        +   LPS RRL Y   K        + +Y        
Sbjct: 500 -----RKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQD 554

Query: 584 ---TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
              T +  R++T+GGKL EN++QAI+RD L + M      GY I++ +HDE+V E P   
Sbjct: 555 GKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSET 614

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             S +  +  +M +   WA GL L A+G+ ++ YRK
Sbjct: 615 AESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/702 (29%), Positives = 311/702 (44%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   V++ D T    +PSD++
Sbjct: 1   MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DETV+  A N+ FERI   + LG+     I    W C+ V A T GLP SL+    
Sbjct: 61  TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  F +    +            +    W  F +Y  RD+E  
Sbjct: 121 VLKL--DKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             + ++L   P+ D   D + LDQ INDRG  +D+ LV +   +  + R +L        
Sbjct: 179 MSIQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTT--AMKH 236

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L  + +     D++  R   + S+
Sbjct: 237 LTELDNPNSVQQMKQWLAD-NGMETDTLGKKIVAELLKTAPLD--LADVLSLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV +DGR RG  QF+GA+RTGRW+G + Q QNLP+    +    + +    
Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +       D     S  +R+  +   G +L+V+D + IEARV+AW+AGE+W+   FA 
Sbjct: 354 DFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALDMGLEEDELPQLVDAWRQANPCIVKFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+ +           +  +R  +   +        + I LPS RRL Y   +   +    
Sbjct: 494 DVDKAAMEA------VRYKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547

Query: 583 ---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    AT +  R  +YG K  ENIVQA +RDILC  M+        IV+ VHDEIV
Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTLQH--CSIVMHVHDEIV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + PSWAKGL L+A+GYE   Y+K
Sbjct: 606 IEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 200/698 (28%), Positives = 312/698 (44%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +G  +    W C+ V + T GLP SL +    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+S  E + + +DQ INDRG RID  LV    +       +  +   KLT   +
Sbjct: 179 QKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +S+ ++  +L  +        ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQTTTGK--VHQVLSLRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR--- 349
             + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTA 353

Query: 350 -GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G    VAD + +EARV+AW++GE+W+ KAFAN EDI
Sbjct: 354 LSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P     V+ E R  GK+ ELALGY G     K M +             
Sbjct: 414 YCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATN----------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L       + + WR     ++Q W D+ +
Sbjct: 463 -----------------------------LGLTEEELHSLVQMWRNASPHIVQFWWDIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                ++     +         +        + + L S R+L YS  K   +   + +  
Sbjct: 494 AAKECIKSHLPQAT------HGIKFIYRSGCMFLRLRSGRKLCYSKPKIGINRFGSESIT 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE V + P
Sbjct: 548 FMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDEAVIDAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               +S+  +  +MT+ P WA GL L A G+ +  Y+K
Sbjct: 608 AN--YSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/699 (32%), Positives = 329/699 (47%), Gaps = 76/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+D+EP+K+ D  +  A+P ++L
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K     +P  +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           SE   K +EGKALI  F   CK +  +         H    W+ F  YC +DVE  R + 
Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            R+        E++LW LDQ INDRG RID DLV        Q +  L  +  +LT   +
Sbjct: 179 NRISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G+ +  +++  ++ ++  ++   + + L L R   + +++ K 
Sbjct: 237 PNPNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++    +T+      E 
Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  VR+  I S G +  V+D + IEARV+AW+AGE W++  F     I
Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  P++ ++K    R  GKV ELALGYQGG      M               
Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       + KAWR  ++ ++Q W D+  
Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E   +  +       L        + + LPS RRL Y+  K +          
Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           +Y     + +  R  TYGGKL ENIVQA++RD L   +      GY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  + S+M +   WAKGLPL A+G+    Y+K
Sbjct: 610 PRGKNE-LDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 208/702 (29%), Positives = 309/702 (44%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET S QPL K GV+ Y E     I L AY+ D  PV+  D      +PS++L
Sbjct: 1   MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V   A N+ FERI   + LG      +    W C+ V A   GLP SL+ A  
Sbjct: 61  CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120

Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  FC+    +  +         H    W  F +Y  RDVE  
Sbjct: 121 VLGLE--KQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             +  RL   P+ D   + + LDQ INDRG  +D++LV +  ++  + R +L + + +LT
Sbjct: 179 MSIQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELT 238

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L  +   Q  + ++  R   + S+
Sbjct: 239 S--LDNPNSVQQMKQWLAD-NGVETDTLGKKAVAELLKTA--PQQLQKVLTLRQQLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV +DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + +    
Sbjct: 294 VKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +       D     S  +R+  +    +K +VAD + IEARV+AW+A E W+   FA 
Sbjct: 354 GFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAE 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G+DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L       +  AWR  +  ++Q W 
Sbjct: 464 ------------------------------ALEMGLSEDELPALVSAWRQANPKIVQFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
            +       V    +           ++       + I LPS R L Y   K   +    
Sbjct: 494 AVDRAVMDAVTRKTTTKT------HGIIFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA SRDILC  MK        IV+ +HDE+V
Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTL--RCCSIVMHIHDEVV 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E       S+  +C  M + P WA GL L+A+GYE   Y+K
Sbjct: 606 IEA--DRRMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/718 (30%), Positives = 324/718 (45%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + IDIET S   L K GV+ Y       I L  Y+ D  PVK+ D      +P D+L
Sbjct: 1   MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98
             L D+TV+  A N+ FER+   + L     G+D               +  + W C+ V
Sbjct: 61  DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQ 154
            A T GLP SLK     L  ++   KM+EGKALI  F   C  +  +        ++   
Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQ--KMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPG 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W  F +Y +RDVE    + ++L   P+ D   D + +DQ INDRG RID+DLV K  ++
Sbjct: 179 KWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L E +  +T+    +      ++ +L    G+++  + +  + ++L  +    
Sbjct: 239 DTRSRSELTEKMQAITNLE--NPNSVQQMKQWLSD-NGMEVDSLGKKAVTALLKTA--PP 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++  R   + S++ K  T+  AV SD R RG   FYGA+RTGRW+G + Q QNLP+
Sbjct: 294 ELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E       D     S  +R+  I  +G +  VAD + IEARV
Sbjct: 354 NHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAK 446
           +AW AGE WK  AFANGEDIY +T  + F+ P     V+ E RA GK+ ELA GY G   
Sbjct: 414 IAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------ALEMGLSEDELPDI 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             +WR  +Q +++ W D+ +     V+   +    R      L        + I LPS R
Sbjct: 494 VSSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGR------LAFFWQAGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +              T +  R  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKML 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                D+ + +HDE+V E    P  S+ TLC  M + P+WA GL L+A+GY    Y+K
Sbjct: 608 --RHCDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/699 (31%), Positives = 330/699 (47%), Gaps = 76/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+D+EP+K+ D  +  A+P +++
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K     +P  +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           SE   K +EGKALI  F   CK +  +         H    W+ F  YC +DVE  R + 
Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            R+    L   E++LW LDQ INDRG RID DLV        Q +  L  +  +LT   +
Sbjct: 179 NRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G+ +  +++  ++ ++  ++   + + L L R   + +++ K 
Sbjct: 237 PNPNSTAQLKTWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++    +T+      E 
Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  VR+  I S G +  V+D + IEARV+AW+AGE W++  F     I
Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  P++ ++K    R  GKV ELALGYQGG      M               
Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       + KAWR  ++ ++Q W D+  
Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577
                V+E   +  +       L        + + LPS RRL Y+  K +          
Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           +Y     + +  R  TYGGKL ENIVQA++RD L   +      GY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  + ++M +   WAKGLPL A+G+    Y+K
Sbjct: 610 PRGKNE-LDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/699 (31%), Positives = 325/699 (46%), Gaps = 76/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY E     I L AYA+DD+PVK+ D  +   +P ++L
Sbjct: 1   MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L    V+  A+N+ FER    K   + +   +W CT+V A T GLP +L     AL  
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           S    K + GKALI  F      +            +  + W+ F  YC +DVE  R + 
Sbjct: 121 SAQ--KDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            R+      + E  LW LDQ INDRG RID+DLV        Q +  L  +  KLT   +
Sbjct: 179 NRISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L+ +L    G+ +  +++  ++ ++ ++N   + + L L R   + +++ K 
Sbjct: 237 PNPNSTAQLKKWLEEK-GLTISSLAKDKIEELIENTNDETVHRVLRL-RQEMAKTSVKKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  D R+RG LQFYGASRTGRW+G + Q QNLP+ +  +    + +      E 
Sbjct: 295 LAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEA 354

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  VR+  I S G +  V+D + IEARV+AW+AGE+W+++ F     I
Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKI 414

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A+ F  P++ ++K    R  GKV ELALGYQGG      M               
Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       + KAWR  ++ +++ W D+  
Sbjct: 461 --------------------------ALNMGLAEGELPELVKAWRTANKKIVKFWYDVEA 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577
                V+E   +  +       L        + + LPS RRL Y+  K +          
Sbjct: 495 AAIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEAL 549

Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           +Y     + +  R  TYGGKL ENIVQA +RD L   +      GY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDV 609

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P      +  + ++M +  SWAKGLPL A+G+    Y+K
Sbjct: 610 PRGKNE-LDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 269/692 (38%), Positives = 373/692 (53%), Gaps = 25/692 (3%)

Query: 1   MS-KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           M   L++D+ET S +P+ K G  +YAE   I L A+A ++  V++WD T++S +P++L Q
Sbjct: 1   MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D   +  AHNS F+R +     GI I   RW  T V A  +GLP +L   C  L   
Sbjct: 60  ALSDPNTIIYAHNSHFDRTML-NHSGIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118

Query: 120 EHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
               K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL 
Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                D E + W  DQ INDRG  +D+ L     E +  E+K+L +    LTD  ++++ 
Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  ++    G+DL DM + TL+  ++  +I    ++L+  RL SS ++  K   L 
Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLRELLAIRLQSSTTSTSKYKALM 298

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353
             VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    +  + + I+AL  G      
Sbjct: 299 NGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIY 358

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI----- 408
            D + L S  +R CI+A  GKKLVV+DL+ IE R+LAW+AGE WKI AF+  +       
Sbjct: 359 DDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADL 418

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YA+AFN   + V K  R IGKVMEL LGY GG   F T A    LDL + ++    
Sbjct: 419 YKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALP 478

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
               +    A S +    +    + + + +  T C+ +K+ WR  H   +  W +L +  
Sbjct: 479 NIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDTV 537

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL-----NTA 583
              +   G     R     +L +RR K  + IVLPS R + Y   + D   +     N  
Sbjct: 538 RHAISSPGITFPCR-----KLKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNPY 592

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           + +  R +TYGGKL EN+ QA +RD+L   M     +GYDIVLTVHDE+++E PD P F+
Sbjct: 593 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAFN 652

Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 653 HEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/718 (29%), Positives = 311/718 (43%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D   VK+ D  +   +P +L+
Sbjct: 1   MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKT---LGIDIPS-----------------KRWICTSV 98
             L D++++  A N+ FER+   +    LGI +                   + W C+ V
Sbjct: 61  DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQ 154
            A T GLP SL+     L       K+ EGK LI  F   C  +  +      R  H  +
Sbjct: 121 WAATMGLPLSLEGVGSVLGLE--KQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPE 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W  F  Y  RDVE    +  RL   P+ +     + +DQ INDRG RID+DLV +  E+
Sbjct: 179 KWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L   I K     + +      ++ +L    G++   + +  +  ++  +    
Sbjct: 239 DTRSRTELTSAIKK--MTDLENPNSVQQMKQWLSN-NGLETDSLGKKVVAELIKTA--PP 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             ++++  R   + S++ K  T+  AV  DGR RG   FYGA+RTGRW+G + Q QNLP+
Sbjct: 294 ELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      +       D     S  +R+  I  +  +  V+D + IEARV
Sbjct: 354 NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446
           +AW AGE W+ K FA G DIY  + ++ F+ P++K   +   R  GK+ ELALGY G   
Sbjct: 414 IAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR  +  +++ W D+       V+   + S         L        + I LPS R
Sbjct: 494 VDAWRQTNPNIVKFWWDVDRAVMEAVKHKHTTS------CYGLTFSCRSGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +              T +  R  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +IV+ +HDE+V E    P  S+  LC  M + P WA+GL L+A+GY    Y+K
Sbjct: 608 --RNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 198/698 (28%), Positives = 328/698 (46%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP K+ D      MP +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D++V+  A N+ FER    +  G+ +  + W CT+V A    LP SL+    ALN 
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  F   CK +  +        ++  + W+LF  YC RDV+  +++ 
Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P+ D E++L+ +DQ INDRG  +D +L+          ++   +   +++    
Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI++  +++  ++ ++  +       +++  RL+ S +++ K 
Sbjct: 238 -NPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEKTEG--EVSEMMKLRLSMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L ++I    R + 
Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     I
Sbjct: 354 VELLYDSTPEVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T +K F+ PI++++K        KV  LA  Y G      +M +   ++ +      
Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------ 467

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                                + + ++WR  +  ++  W ++  
Sbjct: 468 -----------------------------------ELKGLVQSWRTANPHIVNYWYEIDG 492

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E    +      V R+ +      + I LPS R L Y   +   +   + +  
Sbjct: 493 AVKAAVKERKMTT------VGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HDE+V E P
Sbjct: 547 YEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 607 EGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 203/716 (28%), Positives = 311/716 (43%), Gaps = 98/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D  PV++ D      +P +++
Sbjct: 1   MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             L ++ V   A N+ FERI   + L                  G  +    W CT + +
Sbjct: 61  AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAW 156
              GLP SL+     L       K+ EGK LI  FC+       +S        N    W
Sbjct: 121 AYMGLPLSLEGVGAVLGLG--KQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKW 178

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             F  Y  RDVE    + ++L   P+ D   + + LDQ INDRG  +D+DLV +  ++  
Sbjct: 179 ASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDT 238

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + R +L   + K     + +      ++ +L    G+++  + +  +  +L  +      
Sbjct: 239 RSRAELTAAMKK--LTALDNPNSVQQMKQWLSD-NGLNVDSLGKKEVAEMLKTA--PAEL 293

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           + ++L R   + S++ K   + +AV +DGR RG  QFYGA+RTGRW+G + Q QNLP+  
Sbjct: 294 QQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNH 353

Query: 335 RSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             +    + +      +       D     S  +R+  +   G K +V+D + IEARVLA
Sbjct: 354 LPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLA 413

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVF 448
           W AGE W+ + F  G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     
Sbjct: 414 WFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 473

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K M                                         A++  L     + +  
Sbjct: 474 KAMG----------------------------------------ALEMGLSEGELQPLVT 493

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           AWR  +Q +++ W D+       V+          + +  +        + I LPS RRL
Sbjct: 494 AWRNSNQNIVKFWWDIDRAAMNAVK------YHMDSEICGIKFSYKSGMLFITLPSGRRL 547

Query: 569 VYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K   +              T +  R  TYG KL ENIVQA SRDILC  M+    
Sbjct: 548 SYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMRTL-- 605

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   I + +HDE+V E       ++ ++C  M + P+WA GL L+A+GYE   Y+K
Sbjct: 606 SHCFITMHIHDELVIEASLG--VNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 215/694 (30%), Positives = 312/694 (44%), Gaps = 74/694 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET SP  L K GV+ Y       I L +YA D   V+  D      +P  +L
Sbjct: 1   MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A+N+ FER      LG  +    W C+ V A T GLP SLK+    LN 
Sbjct: 61  DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
                KM+EGK LI  FC    +S       ++    W+LF  Y  RDVE    + ++L 
Sbjct: 121 DAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLA 176

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             P+ D   + + +DQ INDRG RID  L      +  + R +      KLT   + +  
Sbjct: 177 DFPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPA 234

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L+ +L    G  +  M++ ++   L+++      ++ +  R   S S++ K   + 
Sbjct: 235 SPLQLQEWLNQH-GCPIESMAKESVDDALANATGQ--VREALELRQELSRSSVAKYRKMI 291

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---- 352
           +   +D R  G LQFYGA+RTGRW+G + Q QNLPR    +    + +     GET    
Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
            +      S  +R+  I S   + +VAD + IEARVLAW+AGE+  + AF NGED+Y  T
Sbjct: 352 YSSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCAT 411

Query: 413 YAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            +  F  P++K   + E R  GK+  LA GY G     K M                   
Sbjct: 412 ASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------------------ 453

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A+K  L     + +  AWR  +  ++QLW  +      
Sbjct: 454 ----------------------ALKMGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATR 491

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------ 584
            +  G  ++ R       L   +    + I LPS RRL Y       +     +      
Sbjct: 492 AISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQ 545

Query: 585 ---SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
               +  +  TYGGKL ENIVQA +RD+L E +      G+ IV+ +HDE+V + P    
Sbjct: 546 GVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEPINSG 605

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +V  +C+LM + P WA+GLP+ A GYE   Y+K
Sbjct: 606 TTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 202/714 (28%), Positives = 311/714 (43%), Gaps = 98/714 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            L IDIET S   L K GV+ Y+E   + + L AY+ D   V + D     ++P ++LQ 
Sbjct: 6   TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65

Query: 61  LRDETVMCVAHNSLFERI----LFKKTL--------------GIDIPSKRWICTSVLART 102
           L D++V+  A N+ FER+      K+                G  +    W C+ + +  
Sbjct: 66  LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQL 158
            GLP SL+     L   E   K  EGK LI  FCK    +            +    W+L
Sbjct: 126 MGLPLSLEGVGAVLGLEEQKLK--EGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWEL 183

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y KRDVE    + K+L   P+ +   + + LDQ INDRG  +D+D+V     + A  
Sbjct: 184 FKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAIS 243

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           +  L   +       + +      ++ +L    G+D   + +  +  +L    +     D
Sbjct: 244 KATLMATMQD--LTDLENPNSVAQMKGWLAAK-GVDTDSLDKKAVIELLKT--VPTDVAD 298

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  R   + S++ K   +  AV  DGR RG  QFYGA+R+GRW+G + Q QNLP+    
Sbjct: 299 VLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHME 358

Query: 337 EEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +  + + I      E       +  G+ S+ +R+  I   G K  VAD + IEARV+A +
Sbjct: 359 DLDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHL 418

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKT 450
           A E W++K FA+  DIY  + +  F  P++K   +   R  GK+ ELALGY G      +
Sbjct: 419 AKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTS 478

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M                                         A+   L     + +  AW
Sbjct: 479 MG----------------------------------------ALDMGLAEEELQPLVDAW 498

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           RA +  ++Q W D+       ++E  +     +              + IVLPS RRL Y
Sbjct: 499 RAANPNIVQFWWDVDNAVKRAIKERTATKTHGIR------FIYKSAMLFIVLPSGRRLAY 552

Query: 571 SDVKGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
              +   +     +          +  R  +YG K  ENIVQAISRDILC  ++    + 
Sbjct: 553 VKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALRTL--SH 610

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             IV  VHDE++ E       S+  +C  M + P W +GL L+A+GYE + Y+K
Sbjct: 611 CFIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/696 (32%), Positives = 317/696 (45%), Gaps = 75/696 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP VGV+ YA  E   I L AYA D   V++ D      +P D+L
Sbjct: 9   MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V+  A N+ FER+     LG  +  + W C+ V A   G+P  L     AL+ 
Sbjct: 69  DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  F    K +  +   +     H    W+ F  YCKRDVE    + 
Sbjct: 129 ETE--KMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAIT 186

Query: 175 KRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+   E D +  DQ INDRG RID DL     +     R    E + +LT    
Sbjct: 187 KRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELTRVD- 245

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+ +  +++  + + L    +     +++  R   + S++ K 
Sbjct: 246 -NPASVTQLLAWLRS-QGLQIDSLAKADVAAALE-GALEGDVAEVLALRQEMAKSSVKKY 302

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +      DGR  G LQF GA RTGRW+G + Q QNLPRQ  S+      +      + 
Sbjct: 303 ERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADM 362

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +         + S+ +R+  +A  G + +VAD + IEAR +AW+AGE W +  F  G DI
Sbjct: 363 LETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDI 422

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y  T  + F   ++K S   R   KV  LA GYQGG    KTM                 
Sbjct: 423 YCETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMG---------------- 465

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                     K  L       +  AWRA +  + QLW D+    
Sbjct: 466 ------------------------GEKLGLSEDEMADIVAAWRAANPKIAQLWWDINAAA 501

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---- 584
             V+++GG+        V R+ +   K  + I LPS R LVY   +   +     +    
Sbjct: 502 IAVIKDGGA------RAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESITHM 555

Query: 585 -----SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                 +  R  TYGGKLTENIVQA +RDIL   +    ++GY +V+ +HDE+V+E P+ 
Sbjct: 556 GVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPEG 615

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              SV  LC+LM++ P WA GLPL AEG+E+  YRK
Sbjct: 616 R-GSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 196/698 (28%), Positives = 327/698 (46%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP ++ D      +P +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +YL D++V+  A+N+ FER    +  G+ +  + W CT V A    LP SL+    ALN 
Sbjct: 61  EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  F   CK +  +        ++  + W+LF  YC RDV+  +++ 
Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P+ D E+ L+ +DQ INDRG  +D +L+          ++ + +   +++    
Sbjct: 179 NKLAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI++  +++  ++ ++ ++       +++  RLA S +++ K 
Sbjct: 238 -NPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVENTQGD--VAEMMKLRLAMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L +++    R + 
Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDL 353

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     I
Sbjct: 354 VELLYDSTPDVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T +K F+ PI +++K        KV  LA  Y G      +M +   ++ +      
Sbjct: 414 YEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEE------ 467

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                                + + ++WR  +  ++  W ++  
Sbjct: 468 -----------------------------------ELKGLVQSWRTANPHIVNYWYEIDG 492

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E           V  + +      + I LPS R L Y   +   +   + +  
Sbjct: 493 AVKAAVKERKMT------KVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVS 546

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HDE+V E P
Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 196/698 (28%), Positives = 302/698 (43%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+  ++P  ++
Sbjct: 1   MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +   +    W C+ V + T GLP SL++    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   KLT   +
Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI    +S+ ++  +L  +  T     ++  R   S S+I K 
Sbjct: 237 ANPNSPLQLKDWLHQ-QGIKTDSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSIKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S      VAD + +EARV+AW++ E W+ ++FA  EDI
Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P     ++ E R  GK+ ELALGY G     K M +             
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATN----------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L       + + WR     ++Q W D+ +
Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580
                ++     +         +        + + L S R L Y   K   +        
Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547

Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N    +  R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE V + P
Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                S+ T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 608 TDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 214/702 (30%), Positives = 317/702 (45%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y  A+   + L  YA D + VK+ D  +   +P ++L
Sbjct: 39  MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L DET+   A N+ FER+   + LG      +    W C+ V +   GL  SL+    
Sbjct: 99  DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158

Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHVQA-WQLFGEYCKRDVEAT 170
            L       K+ EGK LI  F   C  +  +       +      WQ F  Y KRDVEA 
Sbjct: 159 VLGLE--KQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAE 216

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            ++ +RL   P+ +   D + LDQ INDRG ++D+D V +   +     +KL   + ++T
Sbjct: 217 IQIQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQIT 276

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +  + +      ++ +L    G+++  + +  +   L  ++      +++  R   + S+
Sbjct: 277 N--LDNPNSVQQMKSWLCE-NGLEMETLGKKAVAEKLKETDG--ELNEVLSLRQQLAKSS 331

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV SD R RG  QFYGA+RTGR++G + Q QNLP+    +    + I    
Sbjct: 332 VKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNG 391

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             ET      D     S  +R+  +   G K +VAD + IEARVL+W+AGE W+ K FA+
Sbjct: 392 DVETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFAS 451

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M +      ++ 
Sbjct: 452 GGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 511

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                                    + +  AWR  +  + Q W 
Sbjct: 512 L----------------------------------------KPLVNAWRMSNPNITQFWW 531

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           D+       V+E  S           +        + IVLPS RRL Y   +   +    
Sbjct: 532 DVDRAAKQCVKENKSQET------HSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGG 585

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQAISRDIL   MK+     Y IV  VHDE++
Sbjct: 586 ESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSL--RHYRIVAHVHDEVI 643

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            ET   P  SV  +C  M++ P WAKGL L A+GYE   Y+K
Sbjct: 644 IET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 259/691 (37%), Positives = 374/691 (54%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D   +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL ENI QA +RDIL   M      GY IVLTVHDE+++E PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 656 KALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 308/718 (42%), Gaps = 100/718 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ YAE     I L  Y+ D   V + D  +   +P  ++
Sbjct: 1   MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKT---LGID-----------------IPSKRWICTSV 98
             L D+TV+  A N+ FER+   +    LG+                  +  + W C+ V
Sbjct: 61  DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQ 154
            A T GLP SL+     L       K+ EGK LI  F   C  +  +         H   
Sbjct: 121 WAATMGLPLSLEGVGAVLGLE--KQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W+ F +Y  RDVE    +  RL   P+ +   D + +DQ INDRG R+D+DLV +  E+
Sbjct: 179 KWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
             + R +L   +       + +      ++ +L    G++   + +  +  ++  +    
Sbjct: 239 DTRSRSELTAAMKD--MTALDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKTA--PP 293

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++  R   + S++ K  T+  AV  DGR RG   FYG +RTGRW+G + Q QNLP+
Sbjct: 294 ELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      +       D     S  +R+  I  +G +  V+D + IEARV
Sbjct: 354 NHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446
           +AW AGE W+ K F  G DIY  + ++ F+ P++K   +   R  GK+ ELALGY G   
Sbjct: 414 IAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVG 473

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A++  L       +
Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR  +  +++ W D+       V+   + S+        L        + I LPS R
Sbjct: 494 VDAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYG------LTFSCRSGMLFITLPSGR 547

Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            L Y   K   +              T +  +  +YG K  ENIVQA SRDILC  MK  
Sbjct: 548 NLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMKTL 607

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                 IV+ +HDE+V E    P+ S+  LC  M + P WAKGL L+A+GY    Y+K
Sbjct: 608 --RCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 203/702 (28%), Positives = 305/702 (43%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y E     I L  Y+ D   VK+ D      +P ++ 
Sbjct: 1   MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D++V   A N+ FERI   K LG      +    W C+ V +   GLP SL+   +
Sbjct: 61  DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120

Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170
            L       K+ EGK LI  F   C  +  +        +H  + W+ F  Y  RDVEA 
Sbjct: 121 VLGLE--KQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAE 178

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            ++  RL   P+ D   D + LDQ INDRG ++D+D V K  E+    R+ L   +    
Sbjct: 179 MQIQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQ--V 236

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    GI+   + +  + +++    +     +++  R   + S+
Sbjct: 237 LTSLTNPNSVVQMKGWLSD-NGIETETLGKKAVAALIDE--VPDEMSEILALRQKLAKSS 293

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  +V  DGR+RG  QFYGA+RTGR++G + Q QNLP+    +    + +    
Sbjct: 294 VRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSG 353

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             ++      D     S  +R+  I +  +  +VAD + IEARV+AW AGE W+   FA 
Sbjct: 354 DYDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAK 413

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M           
Sbjct: 414 GGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG---------- 463

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A++  L       +  AWR  +  +++ W 
Sbjct: 464 ------------------------------ALEMGLAEEELPELVSAWRCSNPNIVRFWW 493

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+       ++   S +         +        + I LPS R L Y       +    
Sbjct: 494 DVDSAVKKAIKSKTSTAT------HGVHFSCRSGMLFITLPSGRVLSYVKPCMGENKFGG 547

Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +  R  +YG K  ENIVQA SRDIL   MK        IV  VHDEI+
Sbjct: 548 ESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMKTL--RCCSIVAHVHDEII 605

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E    P  S+  +C  M + P WA+GL L+A+GYE + Y+K
Sbjct: 606 IEA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 194/698 (27%), Positives = 304/698 (43%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +LT   +
Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI    +S+ ++  +L  +  T     ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S      VAD + +EARV+AW++ E W+ ++FA  EDI
Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P     ++ E R  GK+ ELALGY G     K M +             
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK----------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L       + + WR     ++Q W D+ +
Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                ++     +         +        + + L S R L Y   K   +   + +  
Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE V + P
Sbjct: 548 FMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                S+ T+  LMTK P WA GL L A G+ +  Y+K
Sbjct: 608 FNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/698 (31%), Positives = 338/698 (48%), Gaps = 77/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+AY       I L AYA+D + VK+ D      +P++++
Sbjct: 1   MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +E ++  A N+ FERI   + L   + +  W CT+V A T G P SL      L  
Sbjct: 61  EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
           +E   KM+EGK LI  F   CK +  +         H  + W  F +YC RDVE  R + 
Sbjct: 121 TEQ--KMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+S+ E+  ++LD  INDRG  +DLDLV +  E       K D          +
Sbjct: 179 KKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECD--RLHKEDTFTEAQRLTGL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +S+  +  +   ++     + L+  RL  + ++I K 
Sbjct: 237 DNPNSVAQLKQWLIE-NGVEVDSLSKKAVSDLAKEADG--EVERLLNLRLQLAKTSIKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  AV  D R+RG LQFYGA+RTGRW+G + Q QNLP+    +  L + +      +T
Sbjct: 294 EAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDT 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S+ +R+  I  +  + +VAD + IEARV+AW+AGE W++  FA    I
Sbjct: 354 LALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI++++K    R  GK+ ELALGY G       M               
Sbjct: 414 YEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +  AWR  +  + +LW D+ +
Sbjct: 460 --------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
                V++  ++       V ++ ++     + I LPS RRL Y   + + +        
Sbjct: 494 AAIKAVKKKTTVM------VGKIKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVT 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT +  R  TYG KL ENIVQAI+RD+L E M    +NGY+IV+ +HDEIV E P
Sbjct: 548 YEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              + S+  +C +M   P+WA+ LPL+A+G+E + YRK
Sbjct: 608 LN-FGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/691 (37%), Positives = 374/691 (54%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D   +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL ENI QA +RDIL   M      GY IVLTVHDE+++E PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 656 KALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/698 (28%), Positives = 328/698 (46%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   LP  GV  YA  EQ  I L AY+ +DEP ++ D      MP +++
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D++V+  A N+ FER    +  G+ +  + W CT+V A    LP SL+    ALN 
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                KM EGK LI  F   CK +  +        ++  + W+LF  YC RDV+  +++ 
Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +L   P+ D E++L+ +DQ INDRG  +D +L+          ++   +   +++    
Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI++  +++  ++ ++  +       +++  RL+ S +++ K 
Sbjct: 238 -NPNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEKTEG--EISEMMKLRLSMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             +  +V  DGR+ G LQFYGA+RTGRW+G + Q  NLP+    +  L ++I    R + 
Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     I
Sbjct: 354 VELLYDSTPDVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T +K F+ PI++++K        KV  LA  Y G      +M +   ++ +      
Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------ 467

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                                + + ++WR  +  ++  W ++  
Sbjct: 468 -----------------------------------ELKGLVQSWRTANPHIVNYWYEIDG 492

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
                V+E    +      V R+ +      + I LPS R L Y   +   +   + +  
Sbjct: 493 AVKAAVKERKMTT------VGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  +YG K  ENIVQA +RD+L E M    K G+DIV  +HDE+V E P
Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLEVP 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +  +M   P W +GLPLKA G+E+  Y+K
Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/698 (30%), Positives = 327/698 (46%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M K+ ID+ET S   L K GV+ YAE     I L AY+ DD  VK+ D      +P ++L
Sbjct: 1   MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L DE++   A N+ FER+   + L   +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHVQ-AWQLFGEYCKRDVEATRELF 174
                KM EGKALI  F   CK +  +        +H    W +F EY +RDVE   E+ 
Sbjct: 121 --DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+   E + + +DQ INDRG  ID  LV    +     R++  +  ++LT    
Sbjct: 179 KKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +++  ++S + ++      K+++  R   S S++ K 
Sbjct: 238 -NPNSPLQLKEWLNKK-GLEIDSLAKKDVESAIKNAEGD--IKEVLELRQELSKSSVRKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + +      + R RG +QFYGA+RTGR+SG + Q QNL R    +  L +++      ET
Sbjct: 294 DAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                  P  + S  +R+  I   G + +++D + IEARVLAWIA E W + AF NGEDI
Sbjct: 354 MEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  T ++ F  P++K   +   R  GK+  LA GYQG     K M               
Sbjct: 414 YCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                      ++  L     + +  +WR  +  ++ LW D+  
Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584
               VV+       R       LV+   K  + I LPS RRL Y   K   +     +  
Sbjct: 494 VVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVV 547

Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                  ++  +  +YGGK  ENIVQAI+RDIL E M    K G++IV+ +HDE+V E+ 
Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIESD 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +    V  +   M+  P WA GL L A+G+E++ Y+K
Sbjct: 608 SSSIEEVNQI---MSIVPGWASGLILDADGFESEFYKK 642


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/691 (37%), Positives = 370/691 (53%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D   +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +         F + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYNESVKHKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y     +    +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/702 (31%), Positives = 328/702 (46%), Gaps = 81/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L   GV+ Y  A    I L  YAWDD+PV+L D      +P  ++
Sbjct: 1   MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             +    V+  A N+ FERI   K L   + +  W CT++ A   GLP  L     AL  
Sbjct: 61  NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K   GK LI  F   CK +  +        +H  + WQ F +YC RDVE  RE+ 
Sbjct: 121 KVQ--KDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++   P+ + E  LWLLDQ IND G  +D+ LV +  +   Q   +L+ +    T   +
Sbjct: 179 RKIERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAK--TLTKL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +S+  ++++L+ ++     + L+  R   + S+I K 
Sbjct: 237 DNPNSVAQLKEWLKE-QGLEVESLSKQAVQNLLTDADG--EIERLLTLRQEMAKSSIAKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  +V  D R+RG  QFYGA+RTGRW+G +FQ QNLP+    +  + + +    R + 
Sbjct: 294 AAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKE 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S+ +R+ +I   G + +VAD + IEARVLAW+A E W +  F     I
Sbjct: 354 LELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  T ++ F  P++K++K     E RA GKV  LA GYQGG    K M +          
Sbjct: 414 YEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADK-------- 465

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             L  T  + + +AWR+ +Q +++ W D
Sbjct: 466 --------------------------------MGLSDTELDDIVRAWRSANQRIVRFWYD 493

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------- 576
           + +     V+E           V  L  +     + I LPS RRL Y   K +       
Sbjct: 494 VEKAAVLAVREREPQR------VGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDK 547

Query: 577 --CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
              +Y       Q  R++TYGG+L ENIVQ  +RD L E M      GY IV  VHDEI+
Sbjct: 548 DGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEII 607

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +E       S+  LC +M +   WA GLPL+A+G+E   Y+K
Sbjct: 608 TEMRKGQ-GSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 261/691 (37%), Positives = 373/691 (53%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +DEPV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   F + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYNESVKRKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 256/691 (37%), Positives = 371/691 (53%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL   +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y     +    +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 259/691 (37%), Positives = 373/691 (53%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCDIPI-NNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D   +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKK+VV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYGESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 258/691 (37%), Positives = 374/691 (54%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D   +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL + +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y      KG+ +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL ENI QA +RDIL   M      GY IVLTVH+E+++E PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ +P WA  +PL A G+EA  Y+K
Sbjct: 656 KALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 192/716 (26%), Positives = 303/716 (42%), Gaps = 98/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L ID+ET S   + K G + YAE     I L   + D+ PV ++D      +P+++L
Sbjct: 2   MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID------------------IPSKRWICTSVLA 100
             L DE ++  A N+ FER+     L                     +    W CT + +
Sbjct: 62  AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAW 156
              GLP SL+     L   +   KM+EGK LI  FC   K +  +         H    W
Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQ--KMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKW 179

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           + F  Y +RDVE    + +RL   P+ D     + +DQ IND G  +D+D+V        
Sbjct: 180 ETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDE 239

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + +  L   +  +T+  + +      ++ +L    G++   + +  +  ++  ++     
Sbjct: 240 RSKSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLIKETDGD--I 294

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +  RL  + S++ K   +  AV  DGR  G  QFYGA+R+GRW+G + Q QNLP+  
Sbjct: 295 SKALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNH 354

Query: 335 RSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            S+    + +      +T      D     S  +R+  IA  G K +V+D + IEARVLA
Sbjct: 355 MSDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLA 414

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVF 448
            +AGE W+ K FA G+DIY  + ++ F  P+ K   +   R  GK+ ELALGY G     
Sbjct: 415 HLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGAL 474

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K+M                                         A++  L     + +  
Sbjct: 475 KSMG----------------------------------------ALEMGLTEEELQPLVD 494

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           +WR+ +  +   W ++       ++            V  +        + I  PS R L
Sbjct: 495 SWRSSNPMITAFWWNVDNAIKTAIKMHIPTE------VNGIHFCYKSGMLLIKRPSGRVL 548

Query: 569 VYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K   +              T +  R  +YG K  ENIVQA+SRDILC  MK    
Sbjct: 549 SYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMKTL-- 606

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               IV  VHDE++ E   +    +  +C  M ++  W  G+ L+A+GYE   Y+K
Sbjct: 607 RHCFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRADGYETNFYKK 660


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/698 (27%), Positives = 302/698 (43%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+  ++P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D T++  A N+ FER+   + +   +    W C+ V + T GLP SL++    L  
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +LT   +
Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L     I    +S+ ++  +L  +  T     ++  R   S S+I K 
Sbjct: 237 ANPNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSIKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S      VAD + +EARV+AW++ E W+ ++FA  EDI
Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  P     ++ E R  GK+ ELALGY G     K M +             
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATN----------- 462

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L       + + WR     ++Q W D+ +
Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580
                ++     +         +        + + L S R L Y   K   +        
Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547

Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N    +  R  TYG KL ENIVQA SRD+L E M+        +V+ +HDE V + P
Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAVIDAP 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                S+ T+  LMT+ P WA GL L A G+ +  Y+K
Sbjct: 608 SNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/699 (30%), Positives = 333/699 (47%), Gaps = 81/699 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+   ++ D  +   +P ++L
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+ ++  A N+ FER+   K LG  + +K W CT+VLA + GLP SL+     LN 
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG  LI  F   CK +  +   +    +H  + W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            RL   PL + E+  + LDQ INDRG  +D  LV +        ++++ +   +L+    
Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+ +  + +  +   L  ++      +++  RL  S +++ K 
Sbjct: 238 -NPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG--EVLEMLKLRLLMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+    + ET
Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFET 353

Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     +  G+ S+ +R+  +   G + +VAD A IEARVLAW++GE W+++ F  G DI
Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQN 465
           Y  + +  F  P++K   +   R  GK+ ELALGY G       M +   GL+ ++    
Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEEL--- 470

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                 + +   WR+ +  ++  W ++ 
Sbjct: 471 --------------------------------------QPLVNQWRSANPHIVAFWWEID 492

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA-- 583
           +              R    +  LV+      + I LPS R+L Y   +   +       
Sbjct: 493 KVAKQ------VYETREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGL 546

Query: 584 -------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                  + +  R  TYG KL ENIVQ I+RD+L  GM    + G  IVL VHDE V E 
Sbjct: 547 TYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV 606

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +    SV  +C L+   P WA+GLPL+A+GY  + Y+K
Sbjct: 607 RE---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/700 (31%), Positives = 326/700 (46%), Gaps = 76/700 (10%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L ID+ET S   +  VG + YAE A I L AYAWDD PV++ D T +  +P+D+L  L 
Sbjct: 2   ILSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALT 61

Query: 63  DETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLAL 116
           D  +M  A N+ FER +    L  +      +    W CT V A T GLP SL      L
Sbjct: 62  DNDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTL 121

Query: 117 NFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              E   KM  G  LI  FCK       +         +  + W  F  YC RDVEA RE
Sbjct: 122 KLGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAERE 181

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + +RL   P+ + ER LW LDQ INDRG RID  L        +  R ++  +   L+  
Sbjct: 182 VRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSGL 241

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L+ +++   G   + +++ T+  ++  +      K ++  ++  S +++ 
Sbjct: 242 E--NPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAKSET-VKTMLQLKMLLSKTSVK 298

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   + +A  SDGR  G LQFYGA+RTGRW+G + Q QNLPR   +E    + +      
Sbjct: 299 KYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDT 358

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +       +P  + S  +R+  I + G +  VAD + IEARV+AW+AGE W++  FA+G 
Sbjct: 359 DALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGG 418

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + +K F+ P++K   +   R  GKV ELALGY GG    K M +           
Sbjct: 419 DIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADK--------- 469

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            L     E +K++WR     +++LW D 
Sbjct: 470 -------------------------------LGLTDAELEEIKQSWRKASPRIVRLWSDF 498

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------- 576
                  V+E  ++S +       + +      + I LPS R L Y   + +        
Sbjct: 499 ESAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDRE 553

Query: 577 -CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
             +Y         ++RTYGG+L EN +QAI+RD L   M      GY IV+ +HDE+V E
Sbjct: 554 GLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVVE 613

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           TP +    +  +C +M+K   WA GL L A+GY    Y+K
Sbjct: 614 TPRS-VDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/699 (30%), Positives = 333/699 (47%), Gaps = 81/699 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +     I L AY  D+   ++ D  +   +P ++L
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+ ++  A N+ FER+   K LG  + +K W CT+VLA + GLP SL+     LN 
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG  LI  F   CK +  +   +    +H  + W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            RL   PL + E+  + LDQ INDRG  +D  LV +        ++++ +   +L+    
Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+ +  + +  +   L  ++      +++  RL  S +++ K 
Sbjct: 238 -NPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG--EVLEMLKLRLLMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+    + ET
Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVET 353

Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           +     +  G+ S+ +R+  +   G + +VAD A IEARVLAW++GE W+++ F  G DI
Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQN 465
           Y  + +  F  P++K   +   R  GK+ ELALGY G       M +   GL+ ++    
Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEEL--- 470

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                 + +   WR+ +  ++  W ++ 
Sbjct: 471 --------------------------------------QPLVNQWRSANPHIVAFWWEID 492

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA-- 583
           +              R    +  LV+      + I LPS R+L Y   +   +       
Sbjct: 493 KVAKQ------VYETREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGL 546

Query: 584 -------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                  + +  R  TYG KL ENIVQ I+RD+L  GM    + G  IVL VHDE V E 
Sbjct: 547 TYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV 606

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +    SV  +C L+   P WA+GLPL+A+GY  + Y+K
Sbjct: 607 RE---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 207/702 (29%), Positives = 308/702 (43%), Gaps = 84/702 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L  DIET S   L K GV+ Y  A+   I L AY+ D   VK+ D      +P  +L
Sbjct: 4   IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114
             L D+ V+  AHN+ FERI F + LG      I  + W CT   A   GLP SL     
Sbjct: 64  SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEAT 170
            L       KM EGK LI  FC     +           ++  + W+ F  Y  RDVEA 
Sbjct: 124 VLGLG--KQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAE 181

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ ++L   P+ D   D + L + IND G ++D+D V +   +      KL + + +  
Sbjct: 182 MEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQE-- 239

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      ++ +L    G++   + +  +  +L  +       +++  R   + S+
Sbjct: 240 ITELDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELLKDAPEH--LAEVLKLRQQLAKSS 296

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  AV SDGR+RG   F GA+RTGR+S  + Q QNLP+    +    ++I    
Sbjct: 297 VKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNG 356

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             E       D     S  +R+  +   G K +VAD + IEARVL+W+AGE W+ + FAN
Sbjct: 357 DSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN 416

Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     K M +      ++ 
Sbjct: 417 GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 476

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                                    + +  AWRA +  +++ W 
Sbjct: 477 L----------------------------------------KPLVNAWRASNPNIVKFWW 496

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581
           D+       ++E       +   V  +        + IVLPS R+L Y       +    
Sbjct: 497 DVDREVKKCIKEK------KSQEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGG 550

Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    AT +  R  +YG K  ENIVQAISRDIL   MK    +   IV  VHDE++
Sbjct: 551 ESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTL--STCSIVAHVHDEVI 608

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E       S+  +C  M + P WAKGL L A+GYE   Y+K
Sbjct: 609 IEA--DQSLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 255/691 (36%), Positives = 371/691 (53%), Gaps = 24/691 (3%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                +   HNS F+R + +  +  +  P +RW  T V A  +GLP +L   C  L   +
Sbjct: 62  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D++L     + + QE+K+L +   ++TDG ++++ Q
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K   L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YAKAF+   D V K  R IGKVMEL LGY GG   F T A   GLDL   +      
Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A+S +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTVR 540

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTAT 584
             +        ++      L +RR    + I LPS R + Y     +    +Y+  N+ +
Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYS 595

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE+++E+PDT  F+ 
Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFND 655

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 222/708 (31%), Positives = 320/708 (45%), Gaps = 89/708 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LF+D+ET SP  L K GV+ YAE     + L  Y+ D  PVK+ D      +P++++
Sbjct: 1   MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108
           + L D  V   A N+ FER+     L             +   +W CT V +   GLP S
Sbjct: 61  EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCK 164
           L+     L+    + K   GK LI RFC  +     +        A+    W+ F  Y +
Sbjct: 121 LEQVATVLDLP--VRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNR 178

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL   P+ + E   + LDQ IND G R+D  LV    +   Q R     
Sbjct: 179 RDVEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLA 238

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +LT     +      L+ +L    G  L  +++  + + L  +      ++++  R 
Sbjct: 239 RAQELTGLE--NPNSPIQLKDWLT-AHGTPLQSLTKDEVAAALDTATG--EVREVLQLRG 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K  T+      DGR RG LQFYGA RTGR++G + Q QNLPR    +    +
Sbjct: 294 ELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEAR 353

Query: 343 TIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            +      E             S  +R+  + ++G + VVAD + IEARV+AW+AGE   
Sbjct: 354 DLVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATT 413

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    K M     
Sbjct: 414 LQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L  +  + +  AWRA +  
Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           V+QLW D+             IS R+   V  L        + + LPS RRL Y   K G
Sbjct: 494 VVQLWADINAAAIEA------ISTRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLG 547

Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +  +  TA          +  +  TYGGKLTENIVQA++RD+L  GM    + GY IV+ 
Sbjct: 548 ENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMH 607

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV ET      +V  +C LM   P WA GLPL A+GY    Y K
Sbjct: 608 VHDEIVVET---ATATVDEICELMATAPDWAAGLPLAADGYACDFYMK 652


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/714 (28%), Positives = 308/714 (43%), Gaps = 104/714 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ETRS   + K GV+ YAE     I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKT---LGIDIP-----------------SKRWICTSV 98
             L DE+V+  A N+ FER+   +    LGI +                     W CT V
Sbjct: 61  DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
            +   GLP SL      L   E   KM EGKALI  F       P            W L
Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQ--KMNEGKALIRYFSTPPFHEPTGA--------KWDL 170

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y +RDVE    + KRL   P+     + ++LDQ INDRG R+D+ LV    ++  + 
Sbjct: 171 FKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRT 230

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           ++KL + +  LT     +      ++ +L    G++   + + ++ ++L  +N+    K+
Sbjct: 231 KEKLTDRLKTLTSLE--NPNSVTQMKAWLKE-QGVETESLDKKSVTALL--ANVPDPLKE 285

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  R   + S++ K   +   V SDGR RG  QFYGA+RTGR+SG   Q QNLP+   +
Sbjct: 286 VLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLA 345

Query: 337 EEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +    +++                  + S  +R+  I+  G+K +VAD + IEARVL+W+
Sbjct: 346 DLEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEARVLSWL 405

Query: 393 AGEDWKIKAFANGEDIYVTTYAKA--FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           A E W++  FAN  DIY  T  +    N      +   R  GK+ EL+ GY G     K 
Sbjct: 406 AKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGALKA 465

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                                     A++  +       +  AW
Sbjct: 466 FG----------------------------------------ALESGMKEEELNPLVDAW 485

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           RA +  ++  W  +       ++E  +     +              + I LP  RRL Y
Sbjct: 486 RAANPNIVDFWWAVDRATKDCIKERSTKVTHGIR------FIYQGSMMFIELPCGRRLAY 539

Query: 571 SDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
              +   +              + +  R  +YG KL EN+ QAISRDILC  M+      
Sbjct: 540 VKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQTL--RT 597

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            DIV  VHDE++ E       S+  +C  M + P WA GLPL+A+G+E + Y+K
Sbjct: 598 MDIVAHVHDELIIEC--DERVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/697 (29%), Positives = 318/697 (45%), Gaps = 77/697 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S   L   GV+ Y+      I L AY+ DDE     D       P + ++
Sbjct: 3   RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D+TV   A N+ FER  F          + W CT+V A    LP SL+     L   
Sbjct: 63  MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGL- 121

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELFK 175
               KM EGK LI  FC     +            +  + W+ F  YC RDV+  +++ +
Sbjct: 122 -DKQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQ 180

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           RL   P+   E++++ LDQ INDRG  +D +LV          ++       +LT     
Sbjct: 181 RLAKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTGLE-- 238

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+++L    G+++  +++ T+K +   +      ++++  RLA+S +++ K  
Sbjct: 239 NPNSVSQLKLWLKEK-GLEVDSLAKDTVKDLSMKAEGD--VQEVLKLRLATSKTSVKKYE 295

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET- 352
            +  +V ++ R+ G LQFYGA+RTGRW+G + Q  NLP+    +  L + + +  R E  
Sbjct: 296 AIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEV 355

Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                    + S+ +R+  +A  G + +++D + IEARVLAW+AGE+W+++ F     IY
Sbjct: 356 ELFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGKIY 415

Query: 410 VTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
             + +  F+  I++++K    R  GK+ ELALGY G      +M                
Sbjct: 416 EASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMG--------------- 460

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    A+K  L       +   WR+ +  +   W  + E 
Sbjct: 461 -------------------------ALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEA 495

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN------ 581
               V++       + + V R+        + + LPS R+L Y   +   +         
Sbjct: 496 AVTAVRDK------KPSKVGRVSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREGLTY 549

Query: 582 ---TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                + + MR  TYG KL ENIVQA SRDIL E M    K G+DIV  VHDE+V E PD
Sbjct: 550 EGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLEVPD 609

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               SV  +  +M  NP W +GLPLKA G+E+  Y+K
Sbjct: 610 GKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/708 (31%), Positives = 315/708 (44%), Gaps = 89/708 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LFIDIET SP  L   GV+ YA+     + L  Y+ D  PV++ D      +P  +L
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108
             L D  V+  A N+ FERI     L             +   +W CT V +   GLP S
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCK 164
           L      L+    + K   GK LI +FC        +        A+    W+ F  Y +
Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL   PL   E D + LDQ +ND G R+D  LV        Q R     
Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +LT     +      L+ +L    G  L  +++  + + L  +      ++++L R 
Sbjct: 239 RAQELTGLE--NPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTATGQ--VREVLLLRG 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +      DGR RG LQFYGA RTGR++G + Q QNLPR    +    +
Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353

Query: 343 TIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           ++      E             S  +R+  I ++G + VVAD + IEARV+AW+AGE   
Sbjct: 354 SLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTT 413

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    K M     
Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L  +  + +  AWRA +  
Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPS 493

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V+QLW D+            +IS R+  +V  L        + I LPS RRL Y   K  
Sbjct: 494 VVQLWADINAAAIE------TISTRQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547

Query: 577 CSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            +            T   +  +  TYGGKLTENIVQA++RD+L   M    + G+ IV+ 
Sbjct: 548 ENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMH 607

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV ET      +V  +C LM+  P WA GLPL+A+GY    Y K
Sbjct: 608 VHDEIVVET---ATATVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 316/711 (44%), Gaps = 96/711 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D  +   +P  +L  L
Sbjct: 20  LSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVLSAL 79

Query: 62  RDETVMCVAHNSLFERILFKKTL----------------GIDIPSKRWICTSVLARTNGL 105
            DETV   A N+ FERI   + L                G+ +    W CT + + T GL
Sbjct: 80  TDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSATLGL 139

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGE 161
           P SL+N  + L       K+ EGK LI  F   C  +  +      +  H  + W+ F  
Sbjct: 140 PMSLENVGIVLGL--DKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFKS 197

Query: 162 YCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           Y KRDVE    + ++L   P+ D     + LDQ INDRG  ID   V    +L  + +  
Sbjct: 198 YNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKTH 257

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           L  ++ ++T     +      +R +L    G+++  + +  +   L      +   +++ 
Sbjct: 258 LMSELKRVTGLE--NPNSVLQMRSWL-KKHGLEMESLGKKEVAKELKTVG--KELAEVLR 312

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R   + S++ K   +  A   D R RG  +FYGA+RTGR++G + Q QNLP+    +  
Sbjct: 313 LRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPDLA 372

Query: 340 LTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
             +++      E       D     S  +R+  I   G K +VAD + IEARVLAW+AGE
Sbjct: 373 EARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLAGE 432

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            W+++ FA G+DIY ++ ++ F+ P++K   +   R  GK+ ELALGY G     K M  
Sbjct: 433 KWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG- 491

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                                  A+   L     + +  AWR+ 
Sbjct: 492 ---------------------------------------ALDMGLTEDELQPLVDAWRSS 512

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  V  LW D+       V E  S+          +V       + I LPS R L Y   
Sbjct: 513 NPMVTTLWWDVDRAVKQCVHEHVSVRT------HNIVFTYKSGFLIIKLPSKRCLYYVKP 566

Query: 574 KGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           + + +              T +  R  +YG K  ENI QAI+RDIL   M+   +  Y I
Sbjct: 567 RVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQTLKE--YRI 624

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V  VHDE + ET  +   SV ++C LM + P WA+GL L+A+GYE + Y+K
Sbjct: 625 VAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/707 (30%), Positives = 313/707 (44%), Gaps = 85/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIE+ SP  L K GV+ YAE     + L  Y+ D  PVK+ D     +MP ++L
Sbjct: 1   MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
             L D +V+  AHN+ FER+     L            +  ++W CT + +   GLP SL
Sbjct: 61  AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKR 165
                 L       K   GK LI +FC  +    ++        +     W  F +Y +R
Sbjct: 121 DAVAAVLKLDVQ--KDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             KLT   + +      L+ +L    G +L  +++  + + L  +    + K+++  R  
Sbjct: 239 AQKLTG--LDNLNSPIQLKQWLVTR-GCELESLAKAEVDAALDTATG--VVKEVLELRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + S++ K   +     +DGR RG +QFYGA RTGR++G + Q QNLPR    +    ++
Sbjct: 294 LAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARS 353

Query: 344 IQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      +             S  +R+  I S G + +VAD + IEARV+AW+AGE   +
Sbjct: 354 LVQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            AF  G+D+Y  T ++ F+ P++K   + E R  GK+  LA GY G     K M      
Sbjct: 414 AAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG----- 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A    L     + +  AWR  +  +
Sbjct: 469 -----------------------------------AFTMGLAEHELKPIVDAWRQANPHI 493

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           +QLW D+ +     +     I  R       L        + I LPS RRL Y   +   
Sbjct: 494 VQLWADVEQAAIAAISSRQPIRLR------NLRFSVESGILFIELPSGRRLAYVQPRLGE 547

Query: 578 SYL---------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +            T   +  +  TYGGKL ENIVQAI+RD+L  GM    K G+ IV+ V
Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHV 607

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV + P    F+V   C LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 194/700 (27%), Positives = 297/700 (42%), Gaps = 70/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G++ Y E     + L AYA+D   V + D  +   +P  ++
Sbjct: 1   MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  V+  A+N+ FE     +  G     ++W CT +     G P+ L     AL  
Sbjct: 61  SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174
            E   K+  GKALI  FC   K +  +         + +  W LF EY  +DV    E +
Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+    +D W++D  +N RG ++D+DLV     +  Q + +L E  +++T   +
Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  ++   + + L  +++ T+   L  +       +++  R A + S+I K 
Sbjct: 238 TNPNSRNQLLTWINDNSDLKLEKLTKETVAESLQIAEDQ--VAEVLHIRRALAKSSISKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
            ++  AV +DGR+RG LQFYGA+RTGRW+G + Q QNLP            +        
Sbjct: 296 ESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNARG 355

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                       S  +R+  +A  G  L V+D + IEARVL+W+A E W+   FA G DI
Sbjct: 356 VKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGDI 415

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  P++K   +   R  GKV ELALGYQGG     TM +             
Sbjct: 416 YCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMGALKQ---------- 465

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          L       +   WR  +  +   W D+  
Sbjct: 466 ------------------------------GLTEDELPDIVHRWRGANPRICGFWYDVDG 495

Query: 527 GFACVVQEGGSISA-RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGDC 577
               V+ +   +     +       +      + I LPS R+L Y           K   
Sbjct: 496 AALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPAL 555

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
            Y   A  +     TYGGKL ENI QAI+RD L   +    K GY  ++ +HDE+V E P
Sbjct: 556 HYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLEVP 615

Query: 638 DT--PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                   +  +  +M     WA GL L A+G+ +  Y K
Sbjct: 616 KDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/697 (30%), Positives = 330/697 (47%), Gaps = 77/697 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L + GV+AYAE     I L AYA+DDE V + D  +   +P+ +L+ L
Sbjct: 10  LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKAL 69

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D ++M  A+N+ FER      L   +P+++W C+SV A T GLP  L      LN  + 
Sbjct: 70  IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGDQ 129

Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRL 177
             K   GKALI  F   CK +  +         + ++ W  +  YC++DVE  R L KRL
Sbjct: 130 --KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRL 187

Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              P+ + E+ LW LDQ +ND G RID DLV +  +L A+E+  L E+  ++T     + 
Sbjct: 188 ASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITGLE--NP 245

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
                LR +L    GI+   +++  +  +L   ++    + +++ R   S +++ K   +
Sbjct: 246 NSVAQLRDWLTSR-GIETSGLAKKQVSDLLQT-DLPGDVRRVLILRQMMSKTSVKKYEAM 303

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             ++  DG +RG LQFYGA+RTGRW+G + Q  NLP+    +    + +      E I  
Sbjct: 304 DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITT 363

Query: 356 PLGLASDCV----RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
             G  +D +    R+  I   G + VV+D + IEARV+AW+AGE W++K F     IY  
Sbjct: 364 LYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEA 423

Query: 412 TYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + ++ F  PI++++K    R  GK+ ELALGY G       M                  
Sbjct: 424 SASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMG----------------- 466

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A++  L       + KAWR  +  ++ LW DL +   
Sbjct: 467 -----------------------ALEMGLSEDELPALVKAWRKANPNIVNLWYDLEKSAF 503

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---------KGDCSYL 580
             V+    ++A+       +        +   LPS R L Y            + + +Y 
Sbjct: 504 EAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYE 558

Query: 581 N--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                + Q  R  TYGGK+ EN+VQAI+RD L E M      GY I   VHDE+V E P 
Sbjct: 559 GVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVP- 617

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               +   +  +M++   WA GLP+ A+ +E   Y+K
Sbjct: 618 NEQDAKADIERIMSEPIDWAPGLPMNADSFETGYYKK 654


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/702 (28%), Positives = 309/702 (44%), Gaps = 73/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G++ YA  +   I L AY+ D   VK+ D  +   +P  ++
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D+ ++  A+N+ FE        G     ++W  T       G  + L     A+  
Sbjct: 61  EALNDKNIIKHAYNAPFEWWCL-NQAGYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119

Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K   GKALI  FC   K +  +        +H  + W+LF  YC +DV    E++
Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   P+   E++LW+LDQ IN  G +ID +LV     +      +L E+ +++T   +
Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L   TG D+ ++ +GT+  ++      +  + L   R   + ++I K 
Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVRVL-EIRQELAKTSIKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351
             + EA+  DGR+RG LQFYGA+RTGRW+G + Q QNLPR         + I      + 
Sbjct: 297 VAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDADF 356

Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 +     S  +R+  + S G K VVAD + IEARV+AW+AGE W+ + FA    I
Sbjct: 357 LKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGKI 416

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG-----KVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  + ++ F  PI+ + K           KV ELALGY G +     M            
Sbjct: 417 YEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMG----------- 465

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A+   L       V + WR  ++ +  LW  
Sbjct: 466 -----------------------------ALDMGLEEKELPDVVRRWRNANKRITDLWYG 496

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL--- 580
           +      +++ G +   + +     + +   +  + I LPS R+L Y       +     
Sbjct: 497 IENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGSN 556

Query: 581 -------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                  N  T +   + TYGGKL ENIVQAISRD L   +K     G   V+ +HDE V
Sbjct: 557 ALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDEAV 616

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +        +  +C LM +   WA GL LKA G+E+  Y K
Sbjct: 617 IDADPN--VDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 218/704 (30%), Positives = 320/704 (45%), Gaps = 81/704 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG+   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++ +LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTGL 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       D        +R+ ++A  G + +V+D + IEARV+AW A +DW ++ F    
Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414

Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            IY  T A+ F+              K+ R  GKV  LALGYQGG    K M        
Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+++ +     + +   WR  ++ +  
Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--- 576
            W +  +     +Q GG     R      L   +    + I LPS R+L Y+    +   
Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLEQGD 549

Query: 577 ----CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                 Y           ++TYGGKL ENIVQA +RD+L E M    K GY IV  VHDE
Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDE 609

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 610 AVAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/716 (26%), Positives = 316/716 (44%), Gaps = 98/716 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  + IDIET S   L K GV+ Y   +   I L  Y+ D   V + D  +   +P +++
Sbjct: 4   IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             L DE +   A N+ FER+   + L                  G  +    W C+ V +
Sbjct: 64  MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAW 156
              GLP  L  A   L   E   K+ EGK LI  F   CK +  +         + +  W
Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQ--KLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKW 181

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           ++F +Y KRDVE    +  +L   P+ +   + + LDQ INDRG  +D+D+V        
Sbjct: 182 EMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDE 241

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + +  L + + ++T     +      ++ +L    G+++  + +  + ++L+ +   +  
Sbjct: 242 KSKAVLADKMQEMTGLE--NPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNTA--PEPL 296

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           K ++  R   + S++ K   ++ AV SDGR RG   FYGA+R+GRW+G + Q QNLP+  
Sbjct: 297 KTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNH 356

Query: 335 RSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            S+    +++      E       D     S  +R+  +   G + +V+D + IEARVL+
Sbjct: 357 MSDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLS 416

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVF 448
            +AGE W+   FA+G DIY  + ++ F  P++K   +   R  GK+ ELALGY G     
Sbjct: 417 HLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 476

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           K+M                                         A+   L     + +  
Sbjct: 477 KSMG----------------------------------------ALDMGLEEDELKPLVD 496

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            WR  +  +++LW D+       V++      R  +++  +        + I LPS R L
Sbjct: 497 MWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPSGRCL 550

Query: 569 VYSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            Y   K   +   +          T +  R  +YG K  ENIVQAISRDIL   ++    
Sbjct: 551 SYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIRTL-- 608

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   I   VHDE++ E   +   S+  +C  M + P W +G+ L+A+GYE + Y+K
Sbjct: 609 SHCFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/698 (30%), Positives = 330/698 (47%), Gaps = 77/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   L K GV+ Y +  Q  I L AY  D+E  ++ D  +   +P  +L
Sbjct: 1   MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             LRD+ V+  A N+ FER+   K L   + ++ W CT+V A + GLP SL+     LN 
Sbjct: 61  SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            E   KM+EG+ LI  F   C+ +I +   +    +H ++ W+LF  YCKRDVE  + + 
Sbjct: 121 EEQ--KMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIR 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KRL   PL + E+ L+ LDQ INDRG  +D +LV +        ++++ +   +L+   +
Sbjct: 179 KRLSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+ +  + +  +   L   +      +++  RL  S +++ K 
Sbjct: 237 DNPNSVSQLKGWL-ENQGVFMDSLGKKDVAKQLKEVDG--EILEMLKLRLLMSKTSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +   V SD R+ G LQFYGA+RTGRW+G + Q QNLP+ +  +  L +T+    + + 
Sbjct: 294 QAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 +   + S+ +R+  +  +G + +VAD A IEARVLAW++GE W+++ F  G DI
Sbjct: 354 LDLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDI 413

Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + A  F  P++K   +   R  GK+ ELALGY G     K M               
Sbjct: 414 YCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG-------------- 459

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L     + +   WR  +  ++  W  + +
Sbjct: 460 --------------------------ALDMGLDEEELQPLVNQWRMANPHIVAFWWVIDK 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA--- 583
                         R    V  L++        I LPS R+L Y   + + +        
Sbjct: 494 ASKE------VYETREPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547

Query: 584 ------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +  R  TYG KL ENIVQ I+RD+L  GM    K   DIVL VHDE V E  
Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    SV  +C L    P WA+GLPL+A+GY  + Y+K
Sbjct: 608 EGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 312/707 (44%), Gaps = 85/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIET SP  L K GV+ Y E     + L +Y+ D  PV++ D     +MP ++L
Sbjct: 1   MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL---------GIDIPSKRWICTSVLARTNGLPSSL 109
             L D  V+  AHN+ FER+     L            +  ++W CT V +   GLP SL
Sbjct: 61  AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKR 165
                 L       K   G+ LI +FC  +  S           +     W  F +Y +R
Sbjct: 121 DAIAAVLKLDVQ--KDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE  + +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             KLT   + +      L+ +L    G +L  +++  + S L  +      K+++  R  
Sbjct: 239 AQKLTG--LDNPNSPIQLKQWLATR-GCELESLAKAEVDSALDTATG--AVKEVLELRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + S++ K   +     SDGR RG +QFYGA RTGR++G + Q QNLPR    +    +T
Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353

Query: 344 IQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      +             S  +R+  I S G + +VAD + IEARV+AW+AGE   +
Sbjct: 354 LVRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTL 413

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +AF  G+D+Y  T ++ F  P++K   + E R  GK+  LA GY G     K M      
Sbjct: 414 EAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG----- 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+   L     + +  AWR  +  +
Sbjct: 469 -----------------------------------ALNMGLAEHELKPIVDAWRQANPHI 493

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           + LW D+ E     +     I  R       L          I LPS RRL Y   +   
Sbjct: 494 VGLWADVEEAAIAAISSRQPIRLR------NLRFSVESGIFFIELPSGRRLAYVQPRLGE 547

Query: 578 SYL---------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +            T   +  +  TYGGKL ENIVQAI+RD+L  GM    K G+ IV+ V
Sbjct: 548 NRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV + P+   F+V   C+LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 193/705 (27%), Positives = 303/705 (42%), Gaps = 95/705 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ETRS   + + GV+ Y  AE   I L  Y+ D   V++ D      +P ++L
Sbjct: 1   MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL-----------GIDIPSKRWICTSVLARTNGLPS 107
             L D++V+  A N+ FER+   + L              +  + W CT V +   GLP 
Sbjct: 61  DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           SL      L   E   KM EGKALI  F       P          + W+LF  Y +RDV
Sbjct: 121 SLAVVARVLGLEEQ--KMTEGKALIRYFSTPPFHEP--------TGEKWELFKSYNRRDV 170

Query: 168 EATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           E    + +RL   P+     + ++LDQ INDRG  +D+  V    ++ A  ++K+ + + 
Sbjct: 171 EVEMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLK 230

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            LT     +      ++ +L    G++   + + T+ ++L++ +   L K+++  R   +
Sbjct: 231 TLTGLE--NPNSVAQMKAWLKE-QGVETESLDKKTVAALLTNVSA--LLKEVLELRQQLA 285

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            S++ K   +   V +D R RG  QFYGA+RTGR+SG   Q QNLP+   +     +++ 
Sbjct: 286 KSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLV 345

Query: 346 ALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                            + S  +R+  I   G+K +VAD + IEARVL+W+A E W++  
Sbjct: 346 RQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDV 405

Query: 402 FANGEDIYVTTYAKA--FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           FAN  DIY  T  +    N      +   R  GK  ELA GY G     K          
Sbjct: 406 FANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG------- 458

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A++  +     + +  AWR  +  ++ 
Sbjct: 459 ---------------------------------ALESGMKEDELKPLVDAWRTANPNIVD 485

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
            W  +       ++E              +        + I LPS RRL Y   +   + 
Sbjct: 486 FWWAVDRAAKDCIKERSITGT------HGIKFIYQSGMMFIELPSGRRLAYVKPRIGENQ 539

Query: 580 LNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                        + +  R  +YG KL ENI QAISRD+LC  M+        IV  VHD
Sbjct: 540 FGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQTLRSMD--IVAHVHD 597

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E++ E       S+ + C  M + P WA+GL L+A+G+E + Y+K
Sbjct: 598 ELIIEC--DERVSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/704 (30%), Positives = 317/704 (45%), Gaps = 81/704 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG+   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++  LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTGL 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       +        +R+ ++A  G + +V+D + IEARV+AW A +DW +  F    
Sbjct: 355 EGIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHG 414

Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            IY  T A+ F+              K+ R  GKV  LALGYQGG    K M        
Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+++ +     + +   WR  ++ +  
Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
            W +  +     +Q GG     R      L   +    + I LPS R+L Y+        
Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLKEGD 549

Query: 575 --GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                 Y           ++TYGGKL ENIVQA +RD+L E M    K GY IV  VHDE
Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDE 609

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 610 AVAEVPEGE-KSIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 198/702 (28%), Positives = 303/702 (43%), Gaps = 74/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIETRS   + K G + YA+     I L AY W+++PVK+ D      +P  L+
Sbjct: 1   MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  V+  A+N+ FE        G + P ++W CT       G  + L     A+  
Sbjct: 61  QALADPNVIKHAYNAAFEWYCL-NCAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELF 174
            +   K+  GKALI  F   CK +  +      +  H    W+LF EYC +DV   RE+ 
Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179

Query: 175 KR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           KR  L P+ + E  LW +D  +N  G R+D DL+     +     ++L ++ + LT   +
Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG--L 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           ++      L  +L    G +  ++ + T+  +L   N     + ++  R     ++I K 
Sbjct: 238 QNPNSAAQLLQWLRD-NGTEADNLQKATVAELLGGIN-PNKVRRMLEIRQQLGKTSIKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A     R+RG  Q+YGA+RTGRW+G + Q QNLPR         + +      + 
Sbjct: 296 VAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYDG 355

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 +     S  +R+  I S G K VVAD + IEARV+AW+AGE W  + FA    I
Sbjct: 356 VRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  T ++ F  P+++++K       R  GKV  LALGYQGG      M            
Sbjct: 416 YEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A++  L       + + WR  +  +  LW  
Sbjct: 465 -----------------------------ALQMGLTEEELPDIVQRWRQANPRIKGLWYA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL--- 580
           +      V++         +       +   +  + + LPS R+L Y       +     
Sbjct: 496 IENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFEKM 555

Query: 581 -------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                     T +     TYGGK+ ENIVQAI+RD L   ++     G  +V  VHDE++
Sbjct: 556 AVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDEVI 615

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P     +V  +C LM +   WA GL LK  G+E+  Y K
Sbjct: 616 IDAPMET--TVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/708 (31%), Positives = 315/708 (44%), Gaps = 89/708 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +LFIDIET SP  L   GV+ YA+     + L  Y+ D  PV++ D      +P  +L
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108
             L D  V+  A N+ FERI     L             +   +W CT V +   GLP S
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCK 164
           L      L+    + K   GK LI +FC        +        A+    W+ F  Y +
Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178

Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           RDVE    +  RL   PL   E D + LDQ +ND G R+D  LV        Q R     
Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +LT     +      L+ +L    G  L  +++  + + L  +      ++++L R 
Sbjct: 239 RAQELTGLE--NPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTATGQ--VREVLLLRG 293

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             + S++ K   +      DGR RG LQFYGA RTGR++G + Q QNLPR    +    +
Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353

Query: 343 TIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
           ++      +             S  +R+  I ++G + VVAD + IEARV+AW+AGE   
Sbjct: 354 SLVRTGNYDAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATT 413

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           ++AF +G+D+Y  T ++ F  P+DK   + E R  GK+  LA GYQGG    K M     
Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A++  L  +  + +  AWRA +  
Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575
           V+QLW D+             IS R   +V  L        + I LPS RRL Y   K G
Sbjct: 494 VVQLWADINAAAIEA------ISTRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547

Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +  +  TA          +  +  TYGGKLTENIVQA++RD+L  GM    + G+ IV+ 
Sbjct: 548 ENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVMH 607

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEIV ET      +V  +C LM   P WA GLPL A+GY    Y K
Sbjct: 608 VHDEIVVET---ATATVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/696 (30%), Positives = 317/696 (45%), Gaps = 76/696 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   + K GV+AY  AE   I L AYA++D+ + + D      +P  +++ L
Sbjct: 2   LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++  A N+ FER    K L   +P ++W C++V A   G   SL+ A  +LN  + 
Sbjct: 62  TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
             KM+EGKALI  F               ++++ W++F  YCK+DVE  R + K+L   P
Sbjct: 122 --KMKEGKALIRYFSMPCKRGERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYP 179

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IND G +ID  LV    E     + K  E+   LT     +     
Sbjct: 180 VTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTGLE--NPNSQV 237

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            L+ +L    G+    +S+  ++ +L      +  K ++  R   S +++ K   +  AV
Sbjct: 238 QLKGWL-ETKGVKAESLSKEKVRELLKEVEDEK-VKRVLKLRQELSKTSVKKYEAIKRAV 295

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IAD 355
             D R+RG L+FYGA+RTGRWSG + Q QNLPR         + +      E        
Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
              + S  +R+  I +   + +V+D + IEARV+AW+AGE W I  F     +Y    ++
Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415

Query: 416 AFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            F  PI+K+ K       R  GKV  LA GYQG       M +                 
Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVK--------------- 460

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                      L       +  AWR  +  +++LW+ + +    
Sbjct: 461 -------------------------MGLKEEELSGIVAAWRKSNSNIVKLWRKIEDAAIK 495

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-----------SY 579
            V+E   +  +       L     +  + I LPS R L Y   + +              
Sbjct: 496 AVREKKVVKMQYG-----LEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYEG 550

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
           +   T    R  TYGGKLTENIVQAI+RD L   M    + GY IV  VHDE++ + P+ 
Sbjct: 551 IEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPNG 610

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + S+  +  +M K   WAKGLPLKA+G+E   Y+K
Sbjct: 611 -FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/704 (30%), Positives = 320/704 (45%), Gaps = 81/704 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LG+   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++ +LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTGL 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       D        +R+ ++A  G + +V+D + IEARV+AW A +DW ++ F    
Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414

Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            IY  T A+ F+              K+ R  GKV  LALGYQGG    K M        
Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+++ +     + +   WR  ++ +  
Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
            W +  +     +Q GG     R      L   +    + I LPS R+L Y+        
Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLKEGD 549

Query: 575 --GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                 Y           ++TYGGKL ENIVQA +RD+L E M+   + GY IV  VHDE
Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDE 609

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 610 AVAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/704 (30%), Positives = 319/704 (45%), Gaps = 81/704 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S + L KVGV+ YA+     I L AY+ D +PV+  D T  S +P +++
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V+ +A N+ FER+   K LGI   +   +W CT V A   GLP+SL      L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
           N  +   K   G  LI  F   CK +  +         H  + WQ F EYC +DV     
Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ + E  L+ LDQ INDRG  ID +L     +++A   +    ++  LT  
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTGL 237

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      L+ +L    G     + +  +   L+  N+ +   +++  RL+ S S+  
Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SD R+ G LQFYGA+RTGRW+G + Q QNLPR   SE    + +      
Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354

Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       D        +R+ ++A  G + +V+D + IEARV+AW A +DW ++ F    
Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414

Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            IY  T A+ F+              K+ R  GKV  LALGYQGG    K M        
Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+++ +     + +   WR  ++ +  
Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
            W +  +     +Q GG     R      L   +    + I LPS R+L Y+        
Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLKEGD 549

Query: 575 --GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                 Y           ++TYGGKL ENIVQA +RD+L E M+   + GY IV  VHDE
Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDE 609

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            V+E P+    S+  +  +M+  P WA+GLPL AEG+E K Y K
Sbjct: 610 AVAEVPEGE-KSIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 198/705 (28%), Positives = 312/705 (44%), Gaps = 82/705 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L ID+ET S   L   GV+ Y E     + L AYA+DD+PV++ D T    +P  ++
Sbjct: 9   MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V+  A N+ FER   KK  GI     +W CT+V A   GLP  L+     L  
Sbjct: 69  HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA--NHVQAWQLFGEYCKRDVEATREL 173
                K   GK LI  F   CK +  +          + ++ W+ +  Y  +DV   RE+
Sbjct: 129 EAQ--KDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREV 186

Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            ++L   P+   E DLW LDQ INDRG ++D  L  +  +   Q +  L ++   +T   
Sbjct: 187 RRKLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQLE 246

Query: 232 IRSSRQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
             +      L+ +L    G++  D   +  + ++L  +      + ++  R     +++ 
Sbjct: 247 --NPNSLTKLKEWLAE-QGLETPDGLGKEHMPTLLVQAPDE-DTRRVLQIRQELGKTSVD 302

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K N ++ ++ +DGR RG LQF GA+RTGRW+G + Q QNLP+ + +   + + +      
Sbjct: 303 KYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDF 362

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +           + S  +R+  I S G + +V+D + IEAR++AW+A E W +  F +  
Sbjct: 363 DLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHG 422

Query: 407 DIYVTTYAKAFNTPID-----KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            IY    ++ F  P++       + E RA GKV  LA GYQGG      M          
Sbjct: 423 KIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG--------- 473

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A+K  +       + K WR  +  +++LW
Sbjct: 474 -------------------------------ALKSGIPEEELPGIVKRWRKANPRIVKLW 502

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS--- 578
               E     V+E  ++          +  R     +   LPS R L Y + +       
Sbjct: 503 YAAEEAALTAVREKRTVPL-----AHGVKYRYKSGTLFADLPSGRSLAYVNPRIKPDPNF 557

Query: 579 --------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                    ++    + M  RTYGG+L EN+VQAI+RD L E +       Y  V+ VHD
Sbjct: 558 GKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVMHVHD 617

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V + P     SV  +  +M++   WA GLPL A G+E + Y+K
Sbjct: 618 EVVLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 206/699 (29%), Positives = 316/699 (45%), Gaps = 71/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA+     I + AY+WD  PV++ D  +   +P +++
Sbjct: 1   MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D  V+  A+N+ FE     +      P ++W CT V     G  + L     AL  
Sbjct: 61  EALADPAVVKHAYNAAFEWYCLNRFF--YSPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K+  G +LI  F   CK +  +     T  +H  + W+LF EYC  DV A  E+ 
Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ D E  LW LDQ IN RG   DL +V     +  Q   +L  + + LT   +
Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            + +    L  +L   TG ++ ++ +GT+  ++   +  + A+ ++  R   S ++  K 
Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDEGK-ARRVLEIRQELSKTSTKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             +  A  SD R+RG LQFYGA+RTGRW+G + Q QNLPR   S     + +    + E 
Sbjct: 296 AAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVEM 355

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 +     S  +R+  +   GK+L VAD + IEARV+AW+AGE W++  FA    I
Sbjct: 356 LKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ F  PI+++ K  + R  GKV ELALGYQGG      M               
Sbjct: 416 YEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG-------------- 461

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       +   WR  ++ ++ LW  +  
Sbjct: 462 --------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSMEA 495

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578
               V++ G  +  R +           +    I LPS R+L Y+      +        
Sbjct: 496 AAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPALH 555

Query: 579 --YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
              ++  + +     TYGGKL EN VQAI+RD L   +      GY IVL VHDE+ +E 
Sbjct: 556 YWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAEL 615

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +    +  +  +M +   WA GLPLK +G+    Y K
Sbjct: 616 --SSADELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 194/706 (27%), Positives = 303/706 (42%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L ID+ET     L K GV++YAE     I L A + D+ PV ++D T +  +P  +L
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           Q L +++++  A N+ FERI     L            +    W C+ V +   GLP SL
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   E   K  EG  +I  FC   K +  +        +H    W  F  Y KR
Sbjct: 122 EGVGTVLKLKEQKLK--EGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  +L   P+ D   + +  DQ INDRG  ID+D V     +  + + K+ E+
Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           + +LT     +      +  +L    G+    + +  +K +L   +       ++  R  
Sbjct: 240 LKELTGLE--NPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT--TKVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354

Query: 344 IQALNRGETIA---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E            S  +R+  + S+GKK +V D + IEARVL+ +AGE W+  
Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + + R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             W D+ +     ++               +  +  K  + I LPS R+L Y   K   +
Sbjct: 495 LFWWDVDKAVKTAIKYQKQTET------HGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                           +  R  +YG K  ENI+QAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DEI+ E       ++  + +LM K P W   + L+A+GYE   Y+K
Sbjct: 607 DEIIIEC--DQSQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 258/696 (37%), Positives = 369/696 (53%), Gaps = 30/696 (4%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L++D+ET S  P+   G  AYA  A I L A+A DD PV + + TE   +P  L   LR
Sbjct: 4   ILWLDLETYSETPIR-NGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALR 62

Query: 63  DETVMCVAHNSLFERILFKKTLG-IDIP------SKRWICTSVLARTNGLPSSLKNACLA 115
           D   +  AHNS F+R + +  L     P        RW  T V A  +GLP SL + C  
Sbjct: 63  DGETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDI 122

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L  ++   K + GKALI  FCK    +      T+  H + W+ F +Y   D+EA RE+ 
Sbjct: 123 LGVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREID 182

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L        E  LW  DQ INDRG ++D  L       +  E+K+L      LTD  +
Sbjct: 183 KKLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           +++ Q   L  ++    G+ L DM   T++  +S  ++    ++L+  RL +S ++  K 
Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSDPDLPIELRELLAIRLQASTTSTSKY 302

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +   I+AL  G  
Sbjct: 303 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCA 362

Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG---- 405
                + + L S  +R CI+A  GKKLVV+DL+ IE R L W++GE+WK++AF +     
Sbjct: 363 DLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGT 422

Query: 406 -EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             D+Y+  YA+AFN   D V K QR IGKVMEL LG+ GG   F T A   GLDL   ++
Sbjct: 423 GHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAK 482

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                       +A+S +     Q   + + +++   AC+ +K+ WR  H   +  W ++
Sbjct: 483 AALPNVPASIQREAQSWYKASVKQKRTYGLSEQVFI-ACDSLKRMWRNAHPKTVSFWYEI 541

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL- 580
            +     +         R     +L +RR    + I LPS R + Y  ++   G  SY+ 
Sbjct: 542 EDTVRRAIAAPRQTFTCR-----KLKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMG 596

Query: 581 -NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
            N+ + +  R +TYGGKLTEN+ QA +RD++   M     +GY+I LTVHDE+++E PDT
Sbjct: 597 INSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDT 656

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             F+   L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 657 EQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/706 (28%), Positives = 308/706 (43%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     I L A + ++ PV ++D + +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLS-KEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FER+     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +RL   P+ D   D +L DQ INDRG  ID+D V    ++  + + ++ E+
Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT     +      +  +L    G+    + +  +K +L   +       ++  R  
Sbjct: 240 LKALTSLE--NPNSVLQMIGWLREH-GVTTDSLDKKAVKELLKTVDDKT--SKVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARK 354

Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E    + D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + + R  GK+ ELA GY G     K M       
Sbjct: 415 VFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
            LW D+       V+E    S         +        + I LPS R+L Y   +   +
Sbjct: 495 LLWWDVDNAVKTAVKEQIPTST------HGIQFEVRSGILFITLPSGRKLAYIKPRIGEN 548

Query: 579 YLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                           +  R  +YG K  ENIVQAISRDIL   +K   +  + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQLKE--FKIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPMEQ--KIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 308/706 (43%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D   +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FERI     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKDK--KMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +RL   P+ D   D +  DQ INDRG  ID+D V    ++  + + K+ E+
Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT     +      +  +L    G+    + +  +K +L   + T     ++  R  
Sbjct: 240 LKALTGLE--NPNSVLQMIGWLREH-GVTTDSLDKKAVKGLLKTVDETT--AQVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354

Query: 344 IQALNRGETIADP---LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E            S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + E R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLTEEELQPLVNSWRLANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--- 575
             W D+       V+E    S         +     +  + I LPS R+L Y   +    
Sbjct: 495 LYWWDVDNAVKTAVKELIPTST------HGIQFEVKRGILFITLPSGRKLAYIKPRIGDN 548

Query: 576 -----DCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENIVQAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KNFKIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPIEQ--KLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 206/693 (29%), Positives = 312/693 (45%), Gaps = 74/693 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L +D+ET S   L + GV+ Y +     I LC+Y+ DD  V   D      +P +++ 
Sbjct: 20  KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D +V+  A+N+ FER      LG  +    W CT V A T GLP SLK+    L  +
Sbjct: 80  ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177
               K+ EGK LI  F   +          ++   AW LF +Y  RDVE    + ++L  
Sbjct: 140 HQ--KLAEGKDLIKYFSLPTKT--GIRHQPSDDSAAWALFKQYNARDVEVETTIRRKLSH 195

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            P+ D     + +DQ INDRG  ID  L         + RK+      +LT   + +   
Sbjct: 196 HPVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPAS 253

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              L+ +L    G  +  M++  + S L  +  +   ++ +  R   S S++ K   +++
Sbjct: 254 PLQLQSWLAE-QGCKISSMAKEDVDSALDTATGS--VREALELRQDLSKSSVAKYRKMAD 310

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----I 353
           A  +DGR  G LQFYGASRTGRW+G + Q QNLPR    +    +++      +      
Sbjct: 311 ATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLY 370

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                  S  +R+  I S   + +VAD + IEARVLAW+AGE+  + AF NGED+Y  T 
Sbjct: 371 PSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATA 430

Query: 414 AKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           +  F  P++K   + E R  GK+  LA GY G     K M                    
Sbjct: 431 SAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG------------------- 471

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                A+K  L  +  + +  AWRA +  ++ +W D+ +     
Sbjct: 472 ---------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQA 510

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------- 584
                 I+ R    +  L     K  + I LPS RRL Y       +     +       
Sbjct: 511 ------ITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQG 564

Query: 585 --SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
              +  +  TYGGKL ENIVQA +RD+L E +      G+++V+ +HDE+V +       
Sbjct: 565 INRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSGT 624

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V  +C+LM + P+WA GLP+ A GY+   Y K
Sbjct: 625 TVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/707 (29%), Positives = 314/707 (44%), Gaps = 85/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  LF DIE+ S   L K GV+ YAE     + L  Y+ D  P+++ D     ++P ++L
Sbjct: 1   MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109
             L D +V+  AHN+ FER+     L    P          ++W CT + +   GLP SL
Sbjct: 61  AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKR 165
                 L       K   GK LI +FC  +    ++        +     W  F +Y +R
Sbjct: 121 DAVATVLKLDVQ--KDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  RL   P+ + E D + LDQ IND G  +D  LV     +    R      
Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLAR 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              LT     +      L+ +L    G  L  +++  + + L  +  T   K+++  R  
Sbjct: 239 AQTLTGLE--NPNSPIQLKQWLASR-GCVLDSLAKAEVDAALDTATGT--VKEVLGLRGD 293

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            + S++ K   +     SDGR RG +QFYGA RTGR++G + Q QNLPR    +    +T
Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353

Query: 344 IQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +      E +           S  +R+  I S G + +VAD + IEARV+AW+AGE   +
Sbjct: 354 LVRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +AF  G+D+Y  T ++ F  P++K   + E R  GK+  LA G+ G     + M      
Sbjct: 414 QAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG----- 468

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+   L     + +  AWRA +  +
Sbjct: 469 -----------------------------------ALTMGLAEHELKPIVDAWRAANPHI 493

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           + LW  +            +I++R+   +  L        + I LPS RRL Y   +   
Sbjct: 494 VALWAGV------EEAAIAAIASRQSIRLRNLRFSVEAGILFIELPSGRRLAYVKPRLGE 547

Query: 578 SYL---------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +            T   +  +  TYGGKLTENIVQAI+RD+L  GM    K G+ IV+ V
Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEIV + P+   F+    C LM+  P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 213/693 (30%), Positives = 319/693 (46%), Gaps = 72/693 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S + +   G +AY  +E   I L AYA+DDEPVK+ D T    +P  +L+
Sbjct: 4   KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLT-IDEIPDTVLE 62

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L +  V+  AHN+ FER    K     +P ++W CT V     GLP+SL     AL  +
Sbjct: 63  DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122

Query: 120 EHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFK 175
           +   K  EGKALI  FC   K +  +         H  + W  F EYC++DV   R + K
Sbjct: 123 QE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAK 180

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           ++   P  + E+  W LDQ I D+G RID+DLV        + +  L +    LT     
Sbjct: 181 KIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTGLE-- 238

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+ +L    G  +  +++ ++  +L+  ++ +  ++++L R   S ++I K  
Sbjct: 239 NPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDLDEDVREMLLLRQEMSKTSIKKYE 297

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +  A   DGR+RG LQF GA+RTGRW+G + Q QNLPR    +    +        E  
Sbjct: 298 KMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAF 357

Query: 354 A----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                +   + S  +R+  IA +G    + D + IEARV+AW+AGE W++  F +   IY
Sbjct: 358 EMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIY 417

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             + ++ F+ PI++V K  R  GKV ELALGY GG      M                  
Sbjct: 418 EASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG----------------- 460

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A++  L     + +  AWR     +  LW+ + +   
Sbjct: 461 -----------------------ALEMGLKENELQGIVDAWRKASPAITSLWRGVEKHAK 497

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNT 582
                   IS R+      L        + I LPS R L Y   K           Y   
Sbjct: 498 LA------ISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGV 551

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                 ++ TYGGKL ENIVQAI+RD L   ++     G D V+ VHDE ++E  ++   
Sbjct: 552 TDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESES- 610

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           SV  L +++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 611 SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 202/706 (28%), Positives = 311/706 (44%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D   +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L D+ V+  A N+ FERI     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKDK--KMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +RL   P+ D   D +  DQ INDRG  ID+D V    ++ ++ + K+ E+
Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT     +      +  +L    G+    + +  +K +L  ++ T     ++  R  
Sbjct: 240 LKALTRLE--NPNSVLQMIGWLREH-GVTTDSLDKKVVKELLKTADETT--AQVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QF+GA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354

Query: 344 IQALNRGETIA---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E      D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + E R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L       +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLKDKELRPLVDSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--- 575
             W D+       +++              +    +K  + I LPS R+L Y   K    
Sbjct: 495 LFWWDVDRAVKTAIKQHIQTET------HGIQFEVNKGMLSITLPSGRKLAYVKPKIGEN 548

Query: 576 -----DCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                  +Y  T T++   R  +YG K  ENIVQAISRDIL   MK   +  ++IV  VH
Sbjct: 549 QFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E       S+  +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/706 (27%), Positives = 302/706 (42%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L ID+ET     L K GV++YAE     I L A + D+ PV ++D T +  +P  +L
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           Q L +++++  A N+ FERI     L            +    W C+ V +   GLP SL
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   E   K  EG  +I  FC   K +  +        +H    W  F  Y KR
Sbjct: 122 EGVGTVLKLKEQKLK--EGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    +  +L   P+ D   + +  DQ IND G  ID+D V     +  + + K+ E+
Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           + +LT     +      +  +L    G+    + +  +K +L   +       ++  R  
Sbjct: 240 LKELTGLE--NPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT--TKVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QFYGA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354

Query: 344 IQALNRGETIA---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E            S  +R+  + S+GKK +V D + IEARVL+ +AGE W+  
Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + + R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             W D+ +     ++               +  +  K  + I LPS R+L Y   K   +
Sbjct: 495 LFWWDVDKAVKTAIKYQKQTET------HGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                           +  R  +YG K  ENI+QAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DEI+ E       ++  + +LM K P W   + L+A+GYE   Y+K
Sbjct: 607 DEIIIEC--DQSQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/698 (27%), Positives = 308/698 (44%), Gaps = 78/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIE+ S   L K GV+ YAE     I L AY+ D  PV + D  +   +P  + 
Sbjct: 1   MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D+ V+  A N+ FER    + L   I    W C+ V +   GLP SL+ A +    
Sbjct: 61  QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTG- 119

Query: 119 SEHLTKMEEGKALIARFCKGSI---DSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K++EGK LI  FCK       +   +    +H  + W  F  Y +RDVE  + + 
Sbjct: 120 -ADKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQ 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P+ + E   ++LDQ INDRG  +D   V          R+ L   +   T   +
Sbjct: 179 DKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLR--TLTKL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      ++ +L    G++   + +  +  +L  +       +++  R   + S++ K 
Sbjct: 237 ENPNSVMQMKDWLAE-QGVETGALDKAAVHELLKSAQGD--VAEVLTIRQKLAKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +    D R RG +QFYGA+R+GR++G + Q QNLP+    +    + +   +  E 
Sbjct: 294 TAMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     L S+ +R+  I     + +VAD + IEARV+AW+AGE W+ + FA    I
Sbjct: 354 LDMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKI 413

Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + ++ FN P++++ K    R  GK+ ELALGY G     + M +   + +++     
Sbjct: 414 YEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGA-LDMGVEEEELKP 472

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              +  +   +                                       ++Q W  + +
Sbjct: 473 LVQAWRQANPK---------------------------------------IVQFWWAVDQ 493

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581
                V++  + S         +        + + LPS R L Y       +        
Sbjct: 494 AAQKAVKQRTTTST------HGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLC 547

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT +  R  TYG KL ENIVQA+SRD+L   M+   + GY IV+ VHDE+V E  
Sbjct: 548 FEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEAK 607

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              + +V  +C+LMT  P W+ GL LKAEGY    Y+K
Sbjct: 608 --QHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 260/703 (36%), Positives = 369/703 (52%), Gaps = 36/703 (5%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            KL+ D ET    P+ K G  AYAE   + +  YA +D+PV  WD T  + MP DL  YL
Sbjct: 3   KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNFS 119
           +D ++   A NS F+R + +  +   I    +RW  T V A  +GLP  L   C  L  +
Sbjct: 62  QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121

Query: 120 EHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
           +   K +EGKALI  FCK    +   +  T   H + W+ F +Y   D+EA R + K+L 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                  E  LW  DQ INDRG ++D  L       +  E+K L +    LTD  ++++ 
Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  AL  ++    G+DL DM + TL+  ++   +  + ++L+  RL +S ++  K  TL 
Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKYKTLL 301

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353
           + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +   I+AL  G      
Sbjct: 302 KGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLF 361

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-------- 405
            + + L S  +R CI+A  GKKLVV+DL+ IE RVLAW+AGE+WK++AF +         
Sbjct: 362 DNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDE 421

Query: 406 --------EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
                    D+Y   YA+AFN   D V+K QR IGKVMEL LG+ GG   F T A   GL
Sbjct: 422 GGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGL 481

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           DL + +             +A+S +     Q   F + +++   AC+ +K+ WR  H   
Sbjct: 482 DLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVFI-ACDSLKRMWRNAHPET 540

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD- 576
           +  W ++       +               +L +RR    + I LPS R + Y  ++ + 
Sbjct: 541 VSFWSEIENTVRRAIINPKQT-----FVCRKLKIRRDGSWLRIQLPSGRSVCYPGIRIEG 595

Query: 577 --CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
              SY+  NT + +  R +TYGGKL EN  QA +RD++   M      GY+I LTVHDE+
Sbjct: 596 DKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDEV 655

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++E PDT  F+   L  L+  NP WA  LPL A G+EA  YRK
Sbjct: 656 LTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/714 (30%), Positives = 324/714 (45%), Gaps = 96/714 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID+ETRS + + K GV+AYA+     ITL + + DD  V+L+D      +P D+L
Sbjct: 1   MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             L DE+V+  A N  FER+   + L                  G  +    W CT +  
Sbjct: 61  TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG--SIDSPPYDCTRANHVQAWQL 158
           RT GL S+L +A  AL   +   KM EGKALI  FC    ++D  P   + A+  + W+ 
Sbjct: 121 RTLGLSSTLASAGAALKLEQQ--KMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWET 178

Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           F  Y K+DVEA   + +RL   P+ D   + + LDQ INDRG R+D++LV     L AQ 
Sbjct: 179 FKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQA 238

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           +  L  ++ +LT     +    Y L  +L    G     + +  +K +L         K 
Sbjct: 239 KATLSSEMRRLTGIE--NPNSVYQLLEWLGE-QGYKSDCLDKAAVKELLKTVKDP--VKS 293

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++  RL  S S++ K   +  A  SD R RG   FYGASRTGRW+G + Q QNLP+    
Sbjct: 294 VLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIP 353

Query: 337 EEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
           +    +        +       D     S  +R+  +   G K ++AD + IEARV+AW+
Sbjct: 354 DLTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWL 413

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           AGE W++ AFANG DIY  + +K F  P     V+ E R  GKV ELA GY G     K 
Sbjct: 414 AGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKA 473

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
           M                                              L  +  + +   W
Sbjct: 474 MG----------------------------------------GDALNLSDSELKQIVTDW 493

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +++ W  + +     +++  +           L      + + I LPS R+L Y
Sbjct: 494 RDASPNIVKFWWTVDDAVKKAIKQKITTET------HGLQFSYQSKMLFITLPSGRKLCY 547

Query: 571 SDVKG--------DCSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           +  +           +Y+   A+ +  R  +YG K  ENIVQA++RD+L   M+      
Sbjct: 548 AHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQTM--RC 605

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             IV  +HDE++ E       S+  +C  M + P+WA+GL L+A+GYE + YRK
Sbjct: 606 CFIVGHIHDEMIIEA--DRRMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 203/698 (29%), Positives = 315/698 (45%), Gaps = 75/698 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           +  L IDIET S   +   GV  Y +     I L AY+ D   V+L D  +   +P+ +L
Sbjct: 80  IKILSIDIETYSDNEI-TNGVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  ++  A N+ FER+   K LG+ +   +W CT + A   GLP+SL++    L  
Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                K+ EG  LI  F   CK +  +         H    W  F  YC RDVE  + + 
Sbjct: 199 KHK--KLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQ 256

Query: 175 KR-----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           ++     L P++  ER L++ DQT+ND+G  ID +L      +  + + +L  ++ ++T+
Sbjct: 257 RKVCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN 316

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L+ +L    G  +  +++   K + + ++     K ++  R  SS +++
Sbjct: 317 LE--NPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASED--VKRVLYLRSMSSKTSV 372

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   ++ A  SD +L   LQFYGA +TGRW+G + Q  NLPR    +  L + +   N 
Sbjct: 373 KKYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKND 431

Query: 350 GE----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            E    T  +   + S  +R+  IA     L V D + IEARV+AW+AGE+W++K F   
Sbjct: 432 FELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGS 491

Query: 406 EDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + A+ F      ++ +   R  GK+ ELALGY+GGA   K M +          
Sbjct: 492 GRIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADK-------- 543

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             L       +   WR     +++LW+D
Sbjct: 544 --------------------------------MGLSDPEIAQIVSGWRNSSPNIVKLWRD 571

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL 580
           +       +     I  ++      L+ R+    + I LPS R L Y   K       Y+
Sbjct: 572 VERAAKEAILSDRIIKLKQG----GLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYM 627

Query: 581 --NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N  T Q +   TYGGKL ENIVQAI+RD L E +    K GY+I   VHDEI++E P 
Sbjct: 628 SQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPT 687

Query: 639 TP-YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                ++  + ++     ++A  LPLK EGY    Y K
Sbjct: 688 DESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 207/700 (29%), Positives = 307/700 (43%), Gaps = 73/700 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDL- 57
           M  L ID+ET     +  VG + Y E     I L AYA+DDEPVK+ D      +P  L 
Sbjct: 1   MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60

Query: 58  LQYLRD-ETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
                    V+  A N+ FER   K    G+      W CT V A T GLPSSL     A
Sbjct: 61  FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120

Query: 116 LNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           L F E   KM+EGKALI  FCK       +         + ++ W+ F EYCKRDVE  R
Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180

Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+   L     +  E++LW LDQ INDRG R+DL LV    +     +++L E+ + LT 
Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             + +      L+ ++    G ++  +++ ++  ++  S      K ++  R   + ++I
Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN-VKKILELRQLMAKTSI 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K  T+  A   D R+RG LQFYGA+RTGRW+G + Q QNLP+    +    + +     
Sbjct: 298 KKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNGD 357

Query: 350 GET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            ET            S  +R+  I ++G + +VAD + IEARV+A++A E W++  F  G
Sbjct: 358 FETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDVFKEG 417

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DIY  + +K F  P++K                   G     +                
Sbjct: 418 GDIYCASASKMFKVPVEKH------------------GINGHLRAKGKI----------- 448

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                      +    +         F     +       +   WR     + Q W ++ 
Sbjct: 449 ----------AELALGYGGAGGAIRAFDKTGSIPDEDLPKLVSDWRKASPHITQFWWNVD 498

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY------ 579
           +     + E  +++         +        + I LPS R+L Y   K +         
Sbjct: 499 KAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGKFGSDVI 553

Query: 580 ----LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +   + Q  R  TYG KL ENIVQA +RD L E M    K G+ +V+ VHDE+V +
Sbjct: 554 TYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVHDELVLD 613

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  SV  +CS+  ++  WA GLPLKA+GYE   Y K
Sbjct: 614 VSK-EIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/707 (29%), Positives = 330/707 (46%), Gaps = 82/707 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPS----D 56
            + +DIET S   + + GV+AYA      I L  Y +D + VK+ D T+  A P     D
Sbjct: 2   TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             + L    V+  A+N+ FER      LG  +P ++W CT+V A T GLP +L     AL
Sbjct: 62  FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121

Query: 117 NFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              E   K + GK+LI  FCK       +         +    WQLF EY ++DV A   
Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P++  E++LW LDQ IND G R+D+DL  K+ +     +++L ++  KLT  
Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLAS 284
            + +      L+M+ F+  G+D+  +++ ++  I +     +   D      ++  R   
Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
             +++ K   +  AV  DG LRG LQFYGA+RTGRW+G + Q  NLP+ +  +  L + +
Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359

Query: 345 QALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                 +T          + S  +R+  I S G + VV+D + IEARV+AW+A E W++ 
Sbjct: 360 VKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLN 419

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + A+ F+ PI+ + K    R  GKV ELALGY GG    K M       
Sbjct: 420 VFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAG--- 476

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                                  +      ++   WR     + 
Sbjct: 477 --------------------------------------TIPDDEIPMIIANWRKASPNIC 498

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +LW++        ++E  +I  +       L      R + I LPS R+L Y D + +  
Sbjct: 499 KLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIEDD 553

Query: 579 YLN----------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
                          T +  R +T+GGKL ENIVQA +RD L   M+  +  GY IV+ V
Sbjct: 554 EKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVMHV 613

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDEI+ + P+T   ++  + ++M +   WA+ LPL+ +GYE   Y+K
Sbjct: 614 HDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 209/702 (29%), Positives = 318/702 (45%), Gaps = 74/702 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA  +   I L AY+ D + VK+ D  +  A+P ++L
Sbjct: 1   MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+DET +  A+N++FE        GI+ P ++W CT V     G  + L     A+  
Sbjct: 61  DLLKDETCIKYAYNAVFEWWCL-NMAGIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119

Query: 119 SEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
            +   K+  G ALI  FC     +  +        +H  + W+LF EYC +DV    E+ 
Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ + E  LW+LD  +N  G R+D +LV     + A  R  L E+   +    +
Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDI--TKL 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   T  L  +L    G ++ ++ + T+  ++   +  + AK ++  R   S +++ K 
Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDDGK-AKRVLEIRQELSKTSVKKY 295

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + EA+  D R+RG LQFYGA+RTGR++G + Q QNLPR       + + +     GE 
Sbjct: 296 KAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGEL 355

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                 +     S  +R+  I S G   VV+D + IEARV+AW+AGE+W+++ F     I
Sbjct: 356 LEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGKI 415

Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  + ++ F  PI+ ++K       RA GKV ELALGYQG       M +          
Sbjct: 416 YEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAA--------- 466

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             L     + +   WR   + +++LW  
Sbjct: 467 -------------------------------DMGLTDEEMKDIVDRWRKSSKRIVELWYA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS----- 578
           L      V++ G     + V           +    I LPS R+L Y       +     
Sbjct: 496 LENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQM 555

Query: 579 -----YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                 +N  T +     TYGGKLTENIVQAI+RD L E +      G+ IV  VHDEI+
Sbjct: 556 QMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDEII 615

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P +    +  +   MT+  SWAKGL L A G+    Y K
Sbjct: 616 LDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/706 (27%), Positives = 304/706 (43%), Gaps = 89/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +L IDIET     L K GV+ YAE     + L A + D+ PV ++D   +  +P D+L
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDF-NKEKLPQDIL 61

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109
           + L ++ V+  A N+ FERI     L            +    W C+ + +   GLP SL
Sbjct: 62  EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165
           +     L   +   KM EG  LI  FC   K +  +        +H    W  F +Y +R
Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           DVE    + +R+   P+     + +  DQ INDRG  ID+D V    ++  + + K+  +
Sbjct: 180 DVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAE 239

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +  LT            +  +L    G+    + +  +K +L   + T     ++  R  
Sbjct: 240 LKTLTGLEK--PNSVLQMISWLREH-GVATDSLDKKAVKELLKTVDETT--AQVLKLRQQ 294

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           ++ S++ K   +   V  DGR RG  QF+GA+RTGRW+G + Q QNLP+    +    + 
Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARE 354

Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           +      E+   + D     S  +R+  + S GKK +V D + IEARVL+ +AGE W+ K
Sbjct: 355 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414

Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F  G+DIY  + ++ F  P++K   + E R  GK+ ELA GY G     K M       
Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A+   L     + +  +WR  +  ++
Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             W D+       V+E    S +       +        + I LPS R+L Y   +   +
Sbjct: 495 LYWWDVDNAVKTAVKELLPTSTQ------NIQFEVKSGILFITLPSGRKLAYIKPRIGEN 548

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                           +  R  +YG K  ENIVQAISRDIL   MK      + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVH 606

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + SLM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPIEQ--KLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 198/706 (28%), Positives = 298/706 (42%), Gaps = 76/706 (10%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ- 59
            L IDIETRS   + K G + YA+     I L AY WDD PV++ D T   + P ++ + 
Sbjct: 5   HLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEE 64

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            LRD  V+  A+N+ FE     +  G   P  +W CT       G  + L     A+   
Sbjct: 65  ALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLP 123

Query: 120 EHLTKMEEGKALIARFC---KGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFK 175
           +   K+  GKALI  FC   K +  +      +  +    W LF EYC++DV    E+ +
Sbjct: 124 QDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILR 183

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           RL   P+ + E  LW LD  +N  G R+D  L+     +     +KL  + V+LT     
Sbjct: 184 RLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTGLDNP 243

Query: 234 SSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH-SNITQLAKDLILNRLASSGSA 288
           +S       +        D  D+     + T++  L    N+ +    ++  R     ++
Sbjct: 244 NSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGKTS 303

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   +  A     R+RG  Q+YGA+RTGRW+G + Q QNLPR         + +    
Sbjct: 304 VKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVKAK 363

Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
             +       +     S  +R+  I S G K VVAD + IEAR +AW+AGE W  + FA 
Sbjct: 364 NYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEVFAT 423

Query: 405 GEDIYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
              IY  T A+ F  P+++++K       R  GKV  LALGYQG       M        
Sbjct: 424 HGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMG------- 476

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+K  L       +   WR  ++ +  
Sbjct: 477 ---------------------------------ALKMGLTEDELPDIVTRWRNANKRICG 503

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS- 578
           LW  +      V+Q         +       +   +  + + LPS R+L Y       + 
Sbjct: 504 LWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQENR 563

Query: 579 ---------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                     +   T +   + TYGGK+TENIVQAI+RD L   ++   + G   V  VH
Sbjct: 564 FGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVFHVH 623

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ + P     +V  +C LM +   WA GL LK  G+E+  Y K
Sbjct: 624 DEVIIDAPMET--TVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/704 (28%), Positives = 303/704 (43%), Gaps = 85/704 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET SP  L   GV+ YAE     I L  Y+ D  P K+ D      +P  +L
Sbjct: 1   MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109
           Q L D TV   A N+ FER+     L    P          + W CT V A + GLP SL
Sbjct: 61  QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
             A  AL       K   G+ LI RF     D        ++    WQ +  Y +RDV+ 
Sbjct: 121 DGAAKALRLPIE--KDPAGQKLIRRFSIPGKD--GIRVLPSDDPVGWQQYISYNRRDVDV 176

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             +L  RL   P+ + E + + LDQ IND G RID  L     E+ ++ R        +L
Sbjct: 177 EVQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQL 236

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L+ +L    G +L  +++  +++ L          +++  R   S S
Sbjct: 237 TGLE--NPNSPIQLKDWL-AAHGCELESLTKTEVEAALETVTGD--VAEVLRLRQDLSRS 291

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K   +     SD R RG +Q+ GA RTGR++G + Q QNLPR    +    +++   
Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351

Query: 348 NRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
              +      +      S  +R+  I S   + +VAD + IEARVLAW+AGE+  ++AF 
Sbjct: 352 GNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFR 411

Query: 404 NGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
            G+D+Y  T ++ F  P++K   + E R  GK+  LA GY G     K M +   + L +
Sbjct: 412 EGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGA-LRMGLDE 470

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                   +  +                                            +Q W
Sbjct: 471 SELKPLVDAWRDANPMV---------------------------------------VQFW 491

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            D+ +          ++  R    V R+ +      + I LPS R L Y   +   +   
Sbjct: 492 HDIEQAAI------TTVETRTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRLGENRFG 545

Query: 582 ----------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                       T +     TYGGKLTEN+VQA +RD+L   M +    G+ IV+ +HDE
Sbjct: 546 MTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMHIHDE 605

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           IV + P     SV  + +LMT+ P+WA GLPL A+GYE   Y K
Sbjct: 606 IVVDEPTDGA-SVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 205/707 (28%), Positives = 303/707 (42%), Gaps = 87/707 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D  PV   D T+    P    
Sbjct: 1   MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER+   +    ++P + W CT V     GLP+SL    
Sbjct: 61  YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             LN      K + GK LI  F   CK +  +         +  + WQ F +YC RDVE 
Sbjct: 121 EVLNL--QNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W LDQ INDRG ++   L+L   EL    + +L +   K+
Sbjct: 179 EMSIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L ++     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKYATGK--AKQMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + +  D R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFI 353

Query: 348 NRGETIAD-------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G  L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGL 457
            F     IY  + A+ F  P+D  K     R  GKV ELALGYQGG    K M +   G+
Sbjct: 414 VFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMGALDMGI 473

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           D  +    V                                          +WR  +  +
Sbjct: 474 DESELQGLVD-----------------------------------------SWRKANPNI 492

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           +  WK   +          ++  R+      L     K  + I LPS R L Y   +   
Sbjct: 493 VAFWKGCQDAAIE------TVRTRQTHLTHGLRFYMKKGFLMIELPSGRSLAYPKARVGE 546

Query: 578 SYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
           +   +            +  + +TYGGKL ENIVQA +RD+L   M      G+ IV  V
Sbjct: 547 NSWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHV 606

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE++ E PD     +  + ++M+K   WA+GL L ++G+ +  Y K
Sbjct: 607 HDEVIVEIPDGSGG-LKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/698 (29%), Positives = 306/698 (43%), Gaps = 79/698 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K G + YA  EQ  I L AY++D E V++ D      +P  +L
Sbjct: 1   MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+D  V+  A+N+ FE        GI  P  +W CT V A    LP+ L N   AL  
Sbjct: 61  TALQDMEVIKHAYNAAFEWYCL-NCAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
           +E   K   GK LI  FC       PY          W+ F EY ++DV +  E+  RL 
Sbjct: 120 AEDKKKSAVGKQLIRYFCV-----KPYKP----DAVKWKAFKEYNRQDVVSEMEIENRLS 170

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
             P+ + E + W  D  +N  G ++D +LV    ++  Q  ++L  + V+LT     +  
Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQLE--NPN 228

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L  +     G  L +  + T++S L   ++    + ++  R     +++ K   ++
Sbjct: 229 SPTQLLNW-VNAQGYPLENTQKATIESALKE-DLPLKVRRVLEIRQQLGKTSVKKYEAMT 286

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---- 352
             +    R+RG  QFYGAS+TGR+SG + Q QNLPR        T+        ET    
Sbjct: 287 NTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETLKLL 346

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                   S  +R+  I S G + VVAD + IEARV+AW+A E W  + FA    IY  T
Sbjct: 347 FDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGKIYEAT 406

Query: 413 YAKAFNTPIDKVSKEQRAIG-----KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            ++ F+ PI+K++K           KV  LALGYQGG     +M                
Sbjct: 407 ASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMG--------------- 451

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    A+K  L       +   WRA +Q ++ LW  +   
Sbjct: 452 -------------------------ALKMGLSEEELPEIVTRWRAANQRIVALWSAVGSY 486

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------- 580
               V++G +     +       ++   R + I LPS R+L Y       +         
Sbjct: 487 ALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESLYF 546

Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N  T +     T+GGKL ENIVQ I+RD LCE +   T  GY IV  VHDE++ +  
Sbjct: 547 YTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDEVIVDAG 606

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +V  LC +M +   WAKGL LK  G+  + Y+K
Sbjct: 607 MD--LTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 272/693 (39%), Positives = 361/693 (52%), Gaps = 24/693 (3%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MS LF+D+ET    P+   G  AYAE+A + L AYA D+ PV +WD      MP DL   
Sbjct: 1   MSTLFLDLETYCEVPIQ-NGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59

Query: 61  LRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L DE V   AHNS F+R + +  +    +   RW  T V A  + LP +L + C  L   
Sbjct: 60  LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119

Query: 120 EHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
               K + GK LI  FCK     S     TR  H   W  F EY   D+EA R + ++L 
Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179

Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                  E  LW LDQTINDRG  +D DL       + + +K L      +T G ++++ 
Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           Q  A+  ++    G+DL DM + TL+  ++  ++    ++L+  RL +S ++  K  TL+
Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLA 299

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353
           + VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    ++ + + I AL         
Sbjct: 300 KGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLF 359

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDI 408
           A+ + L S  +R CI+A  GKKLVVADL+ IE R++AW+AGEDWK+ AF         D+
Sbjct: 360 ANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDL 419

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YAKAF    D V K+QR IGKVMEL LGY+GG   F T A+  G+DL   +     
Sbjct: 420 YKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAWP 479

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
           +   +   +AE    W  +Q              C+ +K+ WR  H  V   WK+L E  
Sbjct: 480 SIPADIIAEAEQFLAWRTEQRLGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKELEEAA 539

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--NT 582
              V   G+    R     R         + I LPS R L Y   +    G  SY+  N 
Sbjct: 540 RLAVLRPGTTYDCRTLKARR-----DGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVNQ 594

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            + +  R +TYGGKL EN+ QA SRD+L   M      GY IVL+VHDE ++E  D   F
Sbjct: 595 YSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDEF 654

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           S   L  LM  NP WA GLPL A G+EA RYRK
Sbjct: 655 SAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/697 (30%), Positives = 315/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T + ++P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRTQLLPWLKEH-GYSASGLTKADVEKELKTAEG--ELKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +                VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    +         +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPVRL------GKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545

Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      G+ +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/697 (30%), Positives = 317/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T + ++P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P+ D E D +  DQ INDRG  +D +LV         + + L  ++  +T  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LANPNSRAQLLPWLKEH-GYSANGLTKADVEQELKTAEG--ELKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +                VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545

Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GY +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/696 (30%), Positives = 318/696 (45%), Gaps = 77/696 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +L ID+ET S  P+ K G   Y +     I L AY++DDEPV++ D T +  +P  ++  
Sbjct: 2   ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMT-KDPLPERVVDA 59

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L ++ +   A N+ FE +  KK    D     W CTSVLA    LP+SL N   AL   E
Sbjct: 60  LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118

Query: 121 HLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
              K   GK LI  F    K +  +P       +  + W  + EY ++DV   R + KRL
Sbjct: 119 --AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRL 176

Query: 178 I--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +       E + WLLDQ IN RG ++D++LV        +  ++  E         + + 
Sbjct: 177 LSLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATES--SKILTGLENP 234

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             T  L+ +L    G DL  M +  + ++L+  +I    + ++ NR     S+I K   +
Sbjct: 235 NSTMQLKEWLTARLGYDLETMRKDDVSNLLAQ-DIPSDVRKVLQNRQVLGNSSIKKYLAM 293

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET--- 352
             AV SDGR+ G LQFYGA R+GRW+G V Q QNLPR    +    + +      E    
Sbjct: 294 KNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDL 353

Query: 353 -IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
              +P  +    +R+ ++A +G + +VAD + IEARV+AW+A E W+   FA G DIY  
Sbjct: 354 LYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCA 413

Query: 412 TYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + +  F+ P++K   +   R  GKV ELALGY GG    K M S                
Sbjct: 414 SASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKG-------------- 459

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                      ++       + +AWR     + + WKD      
Sbjct: 460 ---------------------------EIPEKELPGIIEAWRQASPRITKFWKDADSAAK 492

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----------GDCSY 579
            VV+ G  +   +      +   + K  + I LPS RRL Y+  +           +   
Sbjct: 493 QVVRTGEPVRIIQG----NIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDG 548

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
           ++   +   R  TYGGKL ENIVQA++RD L   M   +K GY IV  +HDE+V E P  
Sbjct: 549 MDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIG 608

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              S+  +  +M +   W +GL L A G+E   Y K
Sbjct: 609 -VGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/706 (28%), Positives = 309/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/697 (30%), Positives = 317/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T + ++P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLP+SL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK +  +         +    WQ+F  YC +DV     
Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P+ D E D ++ DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSANGLTKADVEQELKKAEG--ELKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +                VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + V   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + ++  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545

Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GYD+V  VHDE + E   
Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +  +  LM++ P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/706 (28%), Positives = 308/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  S     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKESTGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/706 (28%), Positives = 309/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/697 (30%), Positives = 316/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T + ++P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLP+SL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK +  +         +    WQ+F  YC +DV     
Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P+ D E D ++ DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G     +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSANGLTKADVEQELKKAEG--ELKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +                VR+ ++A +G    V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + ++  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545

Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GYD+V  VHDE + E   
Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                +  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|139473888|ref|YP_001128604.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/697 (30%), Positives = 317/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T + ++P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             ++   K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G  +  +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSVNGLTKADVEQELKTAEG--ELKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +                VR+ ++A +     V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545

Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GY +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/706 (28%), Positives = 309/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/697 (30%), Positives = 315/697 (45%), Gaps = 80/697 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S   + K GV+ YA  E   I L AY+ D   V+  D T + ++P D+ 
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L D+ V   A N+ FER+   + LG+   +   +W CT VLA+  GLPSSL+   L L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K   GK LI  F   CK S  +         H  + WQ+F +YC +DV     
Sbjct: 119 KL--VQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176

Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           + ++L   P+ D E D +  DQ INDRG  +D +LV         + + L  ++  LT  
Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
            + +      L  +L    G  +  +++  ++  L  +      K ++  +L ++ S++ 
Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSVNGLTKADVEQELKTAEG--ELKRVLELKLQTAMSSLK 291

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +        
Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +                VR+ ++A +     V+D + IEARV+AW AGE W++  F+   
Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M               
Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   +     + +   WR  ++ ++Q WKD+  
Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579
                ++    I       + +L  R  K  + I LPS R L Y+  K +         Y
Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545

Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                      + TYGGKL ENIVQA +RDIL E +      GY +V  VHDE + E   
Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602

Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WA+GL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT + +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   +     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 202/706 (28%), Positives = 308/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K GV+ Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/701 (28%), Positives = 305/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T    
Sbjct: 181 NKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A++  +     + +  +WR  +  ++  WK 
Sbjct: 465 -----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + +D R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T    
Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +      GY IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE+  I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 202/701 (28%), Positives = 306/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K GV+ Y  AE   I + AY+ D  P+   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T    
Sbjct: 181 NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   +  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE+  I + AY+ D   +   D T+    P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T    
Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 199/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   +  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +R++L   +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 199/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T    
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   +     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T    
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/710 (29%), Positives = 319/710 (44%), Gaps = 92/710 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S + + + GV+ YAE     + L +Y+ D  PV   D      +P ++L
Sbjct: 1   MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL--------------GIDIPSKRWICTSVLARTNG 104
             L D++V+  A N  FER+     L              G  I  + W C  + +R  G
Sbjct: 61  SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK--GSIDSPPYDCTRANHVQAWQLFGEY 162
           + SSL +            K++EGK LI  FC              +++  + W+ F EY
Sbjct: 121 MMSSLDDMGKL--LRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEY 178

Query: 163 CKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +RDVE   ++ + L  +P+ D   + + +DQ INDRG  +D     K  EL +  +K+L
Sbjct: 179 NRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKEL 238

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
              + +LT   + +      ++ +L    GI+   + + ++  +L+ +      K++++ 
Sbjct: 239 FPKLKELTR--LDNPNSPAQMKDWLM-RQGIEADSLDKKSMPLLLASAPDD--VKEVLML 293

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S S++ K +T+  A   DGR RG   FYGA+RTGR++G + Q QNLP+        
Sbjct: 294 YQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAE 353

Query: 341 TQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
           T+ +      +       D   + S  +R+  I   GKK VVAD + IEARV++W+AGE 
Sbjct: 354 TKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGET 413

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           W+++AFANGEDIY    AK F  P++K   +   R  GK+ ELA GY G     K M   
Sbjct: 414 WRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMG-- 471

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                   +  L       + + WR   
Sbjct: 472 --------------------------------------GTELNLTDDELYSLVEDWRKTS 493

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +++LW D+      V+ +  S++  R      L        + I LPS RRL Y   K
Sbjct: 494 PNIVKLWSDVQSVAVKVITDQSSMTFGR------LKFSYEIGILFIELPSGRRLAYVRPK 547

Query: 575 GD--------CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
            +         +Y       + +R  TYG KL ENI Q I+RD+L   M         IV
Sbjct: 548 VEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSMAAMKDMD--IV 605

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             VHDE++ E       +V  +C LM + P WA+GL L+A+GYE + Y K
Sbjct: 606 GHVHDEVIVECDPDT--TVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/699 (28%), Positives = 301/699 (43%), Gaps = 70/699 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET SP  +   GV+ Y+E     I L +YA+    V + D      +P D++
Sbjct: 1   MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+ + V+  A+N+ FE     +  G     ++W CT +     G P  L     AL  
Sbjct: 60  LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174
           ++   K + G ALI  F   CK +  +         +    W  +  Y K+DV    E +
Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +RL   P+ +     W +D  +N  G  ID  LV     +  + +K L E+  +LT   +
Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L   T ++L  +++ ++ + ++ ++   LAK ++  R   + S++ K 
Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDADD--LAKKVLTIRKKLAKSSVSKY 294

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA----LN 348
             ++ A   DGRLRGTLQFYGA+RTGRW+G + Q QNLPR   +     +++      + 
Sbjct: 295 EMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRVG 354

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
            G    D     S  +R+ IIA  G  L VAD + IEARV+AW++GE W+ K FA G DI
Sbjct: 355 LGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGDI 414

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           Y  + +  F  P     V+   R  GKV ELALGYQGG    K M               
Sbjct: 415 YCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG-------------- 460

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A+   L       +   WR     +++ W  + +
Sbjct: 461 --------------------------ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVEK 494

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHK-RDVHIVLPSSRRLVYSDVKGDCSYLN---- 581
                V  G  ++          V   +  R + I LPS R+L Y D     +  +    
Sbjct: 495 AAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEAV 554

Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                  +  + E TYGGKL ENI QA++RD L   +   + NG   ++ +HDE V E P
Sbjct: 555 HFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIEVP 614

Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675
                    +          WA+GL L A G+    Y K
Sbjct: 615 KDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         +  + WQ F +YC RDVE    + 
Sbjct: 123 --QSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P+++ E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +T    
Sbjct: 181 NKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +     + + IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 200/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P         
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE    + 
Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L      +T    
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE- 239

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 240 -NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +     
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355

Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     P  L S  VR+   A  G +L V+D + IEARV+AW A E W++  F   
Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415

Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M            
Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      E  +++       + +  +WR  +  ++  WK 
Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582
             E          ++ +R+  +   L     K  + I LPS R L Y       +   + 
Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                      +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 610 EIPRGSNG-LKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 249/729 (34%), Positives = 345/729 (47%), Gaps = 57/729 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDEPV++WD T  S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  L  S    K + GKALI RF K +  +      T   H   W LF +Y   D+ A R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+F +L     S+ E  +  LDQ INDRG+++D+ L     E + + + +L E+  +   
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        LR          + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILRELAPAHR---IHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357

Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           IY  T  K F    D + KE    R IGK  EL LGY GG   F   A + GLDL   ++
Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK------------LIGTACELVKKAWRA 512
            +  T     W      + W + Q  +   +               +   C+ +K+ WR 
Sbjct: 478 TMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--------RLVMRRHKRDVHIVLPS 564
            H   +  W+D+ +     ++  G         V             +     + + LPS
Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597

Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            R + Y                   +V+      N  T Q   + TY GKL EN  QA+ 
Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL AE
Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717

Query: 667 GYEAKRYRK 675
           G E KRY K
Sbjct: 718 GAEMKRYAK 726


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 249/729 (34%), Positives = 345/729 (47%), Gaps = 57/729 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDEPV++WD T  S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  L  S    K + GKALI RF K +  +      T   H   W LF +Y   D+ A R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+F +L     S+ E  +  LDQ INDRG+++D+ L     E + + + +L E+  +   
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        LR          + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILRELAPAHR---IHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357

Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           IY  T  K F    D + KE    R IGK  EL LGY GG   F   A + GLDL   ++
Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMTK 477

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK------------LIGTACELVKKAWRA 512
            +  T     W      + W + Q  +   +               +   C+ +K+ WR 
Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--------RLVMRRHKRDVHIVLPS 564
            H   +  W+D+ +     ++  G         V             +     + + LPS
Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597

Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            R + Y                   +V+      N  T Q   + TY GKL EN  QA+ 
Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL AE
Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717

Query: 667 GYEAKRYRK 675
           G E KRY K
Sbjct: 718 GAEMKRYAK 726


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 262/725 (36%), Positives = 354/725 (48%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAE A + L AYA  + PV++WD T  + +P DL   L 
Sbjct: 10  ILWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+   HNS F+R +  +  GIDIP +RW  +   A  + LP +L   C  L      
Sbjct: 69  DPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL    
Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  ID DLV      + + ++ L +    LT G ++++ Q  
Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T+   +    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E++   I A+  G       D 
Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF   +          
Sbjct: 368 MALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      VSKEQR IGKV E
Sbjct: 428 TGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  +                    W +  +       
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQQAT--ELLEWTKANHRPTFDLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETAHT-----CCGITVQYRRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D P F+   L +LM   P WA+GLPL AEG++ 
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 YRYRK 725


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 262/725 (36%), Positives = 357/725 (49%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAE A + L AYA  + PV++WD T  + +P DL   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+   HNS F+R +  +  GIDIP +RW  +   A  + LP +L   C  L      
Sbjct: 69  DPGVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL    
Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  ID DLV      + + ++ L +    LT G ++++ Q  
Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T+   +    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E++   I A+          D 
Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF   +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      VSKEQR IGKV E
Sbjct: 428 TGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  +    +       ++A     W +  +       
Sbjct: 488 LALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLEWTKANHRPTFDLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT-----CCGITVQYRRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D P F+   L +LM   P WA+GLPL AEG++ 
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 YRYRK 725


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 248/729 (34%), Positives = 345/729 (47%), Gaps = 57/729 (7%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           MS LF+D ET S   L KVG +AYAE     + +C YA+DDE V++WD T+ S MP DL 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + LR     +  +  V HN S+F+R++ K   G DIP    I T + A  + LP SL   
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  L  S    K + GKALI RF K +  +      T   H   W LF +Y   D+ A R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E+F +L     S+ E  +  LDQ INDRG+++D+ L     E + + + +L E+  +   
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        LR          + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILRELAPAHR---IHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K N L    SSD R RG +Q+ GA RT R++G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357

Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           IY  T  K F    D + KE    R IGK  EL LGY GG   F   A + GLDL   ++
Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK------------LIGTACELVKKAWRA 512
            +  T     W      + W + Q  +   +               +   C+ +K+ WR 
Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWRE 537

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--------RLVMRRHKRDVHIVLPS 564
            H   +  W+D+ +     ++  G         V             +     + + LPS
Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597

Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            R + Y                   +V+      N  T Q   + TY GKL EN  QA+ 
Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RD+L   + N   NGY IVL VHDEI+ ETPD P ++V  L  LM + P WA+G PL AE
Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717

Query: 667 GYEAKRYRK 675
           G E KRY K
Sbjct: 718 GAEMKRYAK 726


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 248/672 (36%), Positives = 353/672 (52%), Gaps = 35/672 (5%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-- 90
             YA +D+PV  WD T  + MP DL  YL+D ++   A NS F+R + +  +   I    
Sbjct: 3   ITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAGGI 62

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTR 149
           +RW  T V A  +GLP  L   C  L  ++   K +EGKALI  FCK    +   +  T 
Sbjct: 63  ERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATS 122

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             H + W+ F +Y   D+EA R + K+L        E  LW  DQ INDRG ++D  L  
Sbjct: 123 KTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVLAE 182

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                +  E+K L +    LTD  ++++ Q  AL  ++    G+DL DM + TL+  ++ 
Sbjct: 183 AAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRIAD 242

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
             +  + ++L+  RL +S ++  K  TL + VS DGRLRGTLQF GASRTGRW+G +FQP
Sbjct: 243 PELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQP 302

Query: 328 QNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
           QNLPR    +E +   I+AL  G       + + L S  +R CI+A  GKKLVV+DL+ I
Sbjct: 303 QNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNI 362

Query: 385 EARVLAWIAGEDWKIKAFANG----------------EDIYVTTYAKAFNTPIDKVSKEQ 428
           E RVLAW+AGE+WK++AF +                  D+Y   YA+AFN   D V+K Q
Sbjct: 363 EGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQ 422

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R IGKVMEL LG+ GG   F T A   GLDL + +             +A+S +     Q
Sbjct: 423 RQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASVKQ 482

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
              F + +++   AC+ +K+ WR  H   +  W ++       +               +
Sbjct: 483 KRTFGLSEQVFI-ACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQT-----FVCRK 536

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTATSQLMRERTYGGKLTENIVQ 603
           L +RR    + I LPS R + Y  ++ +    SY+  NT + +  R +TYGGKL EN  Q
Sbjct: 537 LKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQ 596

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663
           A +RD++   M      GY+I LTVHDE+++E PDT  F+   L  L+  NP WA  LPL
Sbjct: 597 AAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDLPL 656

Query: 664 KAEGYEAKRYRK 675
            A G+EA  YRK
Sbjct: 657 SAGGFEAYHYRK 668


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 254/734 (34%), Positives = 346/734 (47%), Gaps = 65/734 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWD--RTEQSA------- 52
           LF+D ET S   L KVG +AYAE     I L +YA+DD P K+WD       +       
Sbjct: 5   LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64

Query: 53  -MPSDLLQYLRDET---VMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
             P DLL+ LR      V  V HN  +F+R++ ++ LG+DIP +    T V A  + LP 
Sbjct: 65  SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRD 166
           SL   C  LN    L K + GKALI RFCK +  +       R  H   W+ F  Y + D
Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184

Query: 167 VEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + A RE++ ++      D E ++  LDQ INDRG+ +D DL       +A  R +L E  
Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                G +  +     LR          + +  + TL  +L  +++   A+ +I  RL +
Sbjct: 245 QATYGGGLTGADFLPLLRDLAPAHH---IPNAQKSTLGDLLDDADLPDEARQVIEMRLGA 301

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           + +A  K   L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R    E+ L + I
Sbjct: 302 ASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARGI 361

Query: 345 QALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           +AL RG  E   D + LA+  VR CII + GKKLVVAD + +E R LAW+AGED  +  F
Sbjct: 362 EALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDTF 421

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             G DIY  T  K F    D V   +R IGK  EL LGY GG   F T + + GLDL++ 
Sbjct: 422 RAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEEM 481

Query: 463 S---QNVKSTSTFEDWEQAESHHLWM---------QDQYPEFAVKDKLIGTACELVKKAW 510
           +           +    +A                +       V  K     C+ +K+ W
Sbjct: 482 AVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRMW 541

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGS-----------ISARRVANVPRLVMRRHKRDVH 559
           R  H   +Q W DL E     +   G+                          +    + 
Sbjct: 542 RESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWLK 601

Query: 560 IVLPSSRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           I LPS R L Y                     +      N  T Q   + TYGGKL EN+
Sbjct: 602 IELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAENV 661

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661
            QA+ RDIL   M      GY+I+L+VHDE+++ETPDT  ++V  L  LM   P+WAKG 
Sbjct: 662 TQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKGF 721

Query: 662 PLKAEGYEAKRYRK 675
           PLKAEG+E  RY+K
Sbjct: 722 PLKAEGWEGYRYKK 735


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/704 (29%), Positives = 310/704 (44%), Gaps = 74/704 (10%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56
           KL+IDIET S   +   G++ YAE     + L AYA DD  V+L D T+   +       
Sbjct: 5   KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + + L  +  +  AHN+ FE    K+ L I I   RW CT V     G P+SL+    AL
Sbjct: 65  VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172
           +  E   K+  GKALI  F   CK +  +         H  + W+LF EYCKRDVE  RE
Sbjct: 125 DMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVARE 184

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           + K L  +  G    W+ D  +N RG  +D  LV     +  + +    + I ++T    
Sbjct: 185 IDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITGVD- 243

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            + R    +  +L      ++  ++  ++K++L  S++T  A+ ++        ++  K 
Sbjct: 244 -NPRSRAQVLDWLNDTLDEEITSLNAASVKALLE-SDLTDDARAVLTAWQGLGKTSTKKY 301

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            TL  A   D R+RG LQFYGASRTGRW+G + QP NLPR +         +      + 
Sbjct: 302 ETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYNLNQAGELVKAGHKKD 361

Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           I           S  +R+C +   G K V+ D + IEARVLAW+AGE W ++ F     I
Sbjct: 362 IELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGDGKI 421

Query: 409 YVTTYAKAFNTPID-----KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           Y  T A+ +N           +   R  GK+  LALGYQG     + M +          
Sbjct: 422 YEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS--------- 472

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                          +D+        + +AWR  +  + +LW+ 
Sbjct: 473 -------------------------------EDEFTDDELRGLVRAWRVANPCIAELWRY 501

Query: 524 LTEGFACVVQEGGSISARR--VANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCS 578
                   V +            +    +   +  ++ I LPS R L Y +     G   
Sbjct: 502 TEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYYHNPVIVDGAIY 561

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
           Y +   +   +E+TYGGKL ENIVQAI+RD+L + +   TK          IVL VHDE+
Sbjct: 562 YTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIVLHVHDEV 621

Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V E        V  L   + +  PSWA+GLPLK E + +  Y+K
Sbjct: 622 VVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 262/725 (36%), Positives = 358/725 (49%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GIDIP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  
Sbjct: 188 YTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF + +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+KEQR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  ++            +A     W +          
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   WK L       ++   +           + M+  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG++ 
Sbjct: 661 AACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQT 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 HRYRK 725


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 261/725 (36%), Positives = 355/725 (48%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA + L AYA    PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GI IP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G       D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF   +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+K+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  +             +A     W +  +       
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQ--EATELLEWTKANHRPTFGLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E 
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 HRYRK 725


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 259/725 (35%), Positives = 354/725 (48%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GIDIP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            S  E  LW LDQTINDRG  +D DL       + + +  L      LT G ++++ Q  
Sbjct: 188 YSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF + +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+KEQR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  ++            +A     W +          
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG++ 
Sbjct: 661 AACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQT 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 HRYRK 725


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 192/685 (28%), Positives = 293/685 (42%), Gaps = 85/685 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           T     +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           ++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+  L      +
Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353

Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                          P  L S  VR+   A  G +L V+D + IEARV+AW A E W++ 
Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F     IY  + ++ FN P++ ++K    R  GKV ELALGYQGGA   K M       
Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                           E  +++       + +  +WR  +  ++
Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
             WK   E          ++ +R+  +   L     K  + I LPS R L Y       +
Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +            +  + +TYGGKL ENIVQA +RD+L   +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKN 654
           DE++ E P      +  + ++M K 
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKP 631


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 261/725 (36%), Positives = 358/725 (49%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GI+IP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G       D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF + +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+K+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  +             +A     W +  +       
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQ--EATELLEWTKANHRPTFGLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E 
Sbjct: 661 AACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 HRYRK 725


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 261/725 (36%), Positives = 356/725 (49%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA + L AYA  + PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GI IP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F EY +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+E +T  I A+  G       D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF   +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+K+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  +             +A     W +  +       
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQ--EATELLEWTKANHRPTFGLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E 
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 HRYRK 725


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 258/728 (35%), Positives = 355/728 (48%), Gaps = 67/728 (9%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GI+IP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G + QP NLPR   S+ ++   I A+  G       D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF + +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+K+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  ++                    +Q          
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQQA-----MEALQWTKANQRPTF 542

Query: 497 KLIGTA---CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            L   A   C++ K+AWR  H  +   W+ L       +    +           + ++ 
Sbjct: 543 GLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQY 597

Query: 554 HKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISR 607
            +  + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SR
Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667
           D+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YEAKRYRK 675
           +E  RYRK
Sbjct: 718 FETHRYRK 725


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 243/766 (31%), Positives = 342/766 (44%), Gaps = 94/766 (12%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M    +LF+D ET S   L KVG +AYAE     I +C YA D+  V+ WD TE   MP 
Sbjct: 1   MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPR 60

Query: 56  DLLQYLRDETVMC---VAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           +L + LR  +      V  N  LF+R++ ++  GID+P  +   T ++A  + LP SL  
Sbjct: 61  ELRKALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDM 120

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            C  L       K + GKALI RFCK +  +      TR  H + W  F  Y   D+ A 
Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180

Query: 171 RELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           RE++ R+     +  E ++ L+DQ INDRG+ +D+DL     + +   +++L E+  +  
Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERF 240

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
            G +  +    ALR          + +  + TL  +L   +     K LI  RL +S +A
Sbjct: 241 GGKLTGNDFLPALRDLA---PAFTIHNAQKSTLNDLLEDPDFPDEGKVLIEMRLGASSTA 297

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             K N L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R E S++   +  +   
Sbjct: 298 STKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREG 357

Query: 349 RGETIADPLGLA-----------------------SDCVRSCIIASNGKKLVVADLAGIE 385
             +                                +  VR CII + GKK VVAD + +E
Sbjct: 358 ESDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVE 417

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIGKVMELALGYQ 442
            R LAWIAGE   +  F  G DIY  T  K F    +      K+ R IGK  EL LGY 
Sbjct: 418 GRGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYG 477

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           GG   F   A + GLDL   ++ +K T     W  A+  + + +    +   K       
Sbjct: 478 GGVAAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDER 537

Query: 503 ------------CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-------------- 536
                       C+ +K+ WR  H   +  W +L +   C ++  G              
Sbjct: 538 PTYILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGK 597

Query: 537 -SISARRVANVPRLVMRRH-------KRDVHIVLPSSRRLVYSDV--------------- 573
            ++   R                      + I LPS R + Y  +               
Sbjct: 598 KALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKK 657

Query: 574 ----KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               +      N  T Q   + TYGGKLTENIVQA+ RDIL   M      GY+IVL+VH
Sbjct: 658 RTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVH 717

Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+++E PDT  ++   LC+LM   P WAKG PL AEG    RYRK
Sbjct: 718 DELITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/710 (14%), Positives = 195/710 (27%), Gaps = 172/710 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET S   +          +A I   ++A +                       
Sbjct: 332 KTFSFDTETTSLNYM----------EAEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERD 381

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
            + + L   L D     +  N  ++  +     G+ +       T + +           
Sbjct: 382 KVLAALKPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIA-EDTMLESYVLNSTANRHD 439

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +       L       +   GK                      +  + +  G Y   D 
Sbjct: 440 MDTLASKHLGRETIHFEDIAGKGAKQL---------------TFNQISLEQAGPYAAEDA 484

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L   L P    E             L  +   +  RG  +D   +    + +A+ 
Sbjct: 485 DITLQLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAER 544

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQ 272
             +L+E+  +       +      L+   +   G             T + +L       
Sbjct: 545 MLELEEEAYEKAGQKF-NLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELAEKY 603

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               ++L     S       + L E ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 604 ELPRVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVA-ATGRLSSSDPNLQNIP 662

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G KL+ AD + IE R++A 
Sbjct: 663 ------------------------VRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAH 698

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G++  +KAF+ G D++  T A+ FN   D+VS EQR   K +                
Sbjct: 699 LSGDEGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAIN--------------F 744

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +  +  +     + 
Sbjct: 745 GLIYGMS------------------------------AFGLARQIHVERSEAQSYIDKYF 774

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            ++ GVL     +                                   +     RRL   
Sbjct: 775 ERYPGVLNYMNRIRAEAQDTGY--------------------------VETLFGRRLYLP 808

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDI 624
           D++     L  A     R            +Q  + DI+   M                +
Sbjct: 809 DIRSSNRNLQQAA---ERTAINAP------MQGTAADIIKRAMLAVDAWLEGDSAPPAKM 859

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE++ E  ++   +V   L  +M+        +PL  E      +
Sbjct: 860 IMQVHDELILEVEESAVEAVKEKLTQIMSSAAD--LNVPLLVEAGVGNNW 907


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 259/725 (35%), Positives = 358/725 (49%), Gaps = 61/725 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET SP P+   GV AYAEQA   L AYA  D PV++WD T  + MP +L   L 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+   HNS F+R +  +  GI+IP +RW  +   A  + LP +L   C  L      
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL    
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q  
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L    
Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356
           S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408
           + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K++AF + +          
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWH 427

Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436
                                           Y   YA +F      V+K+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           LALGY GG   F   A+   +DL+  ++            +A     W +  +       
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANHRPTFGLS 545

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                AC++ K+AWR  H  +   W+ L       +    +           + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600

Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610
            + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVL 660

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
              M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E 
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 HRYRK 725


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 199/701 (28%), Positives = 303/701 (43%), Gaps = 85/701 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + +D+ET S   + K GV+ YA  E   I   +Y+ +   V L D T +   P  L 
Sbjct: 1   MR-IDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLT-KEEFPEFLK 57

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNA 112
            ++ +      A N++FERI                  K W    V A+  GLP+SL+  
Sbjct: 58  NHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERC 117

Query: 113 CLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVE 168
              L   E   K   GKALI  F   CK +  +         +  + W+ +GEY  +DV 
Sbjct: 118 ASYLGLEEQ--KDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVV 175

Query: 169 ATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               + ++L   P+ D E D +  DQ INDRG  +D +LV         + + L  ++  
Sbjct: 176 TQMAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKA 235

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           +T   + +      L  +L    G     +++  ++  L  +      K ++  +L ++ 
Sbjct: 236 ITG--LANPNSRAQLLPWLKEH-GYSANGLTKADVEQELKTAEG--ELKRVLELKLQTAM 290

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           S++ K   +  A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R    +    +    
Sbjct: 291 SSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVK 350

Query: 347 LNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
               +                VR+ ++A +G    V+D + IEARV+AW AGE W++  F
Sbjct: 351 KRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 410

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           +    IY  + ++ F  PI+++ KE R  GK+ ELALGYQGG    K M           
Sbjct: 411 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG---------- 460

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A+   +     + +   WR  ++ ++Q WK
Sbjct: 461 ------------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWK 490

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------ 576
           D+       ++    I       + +L  R  K  + I LPS R L Y+  K +      
Sbjct: 491 DVQRAAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 544

Query: 577 -CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
              Y           + TYGGKL ENIVQA +RDIL E +      G+ +V  VHDE + 
Sbjct: 545 KIIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAII 604

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E       ++  +  LM + P WA+GLPL +EGY  K Y K
Sbjct: 605 E---GSGLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 226/612 (36%), Positives = 326/612 (53%), Gaps = 24/612 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  YL D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D 
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC---SYLNT--ATSQ 586
           +Q  G           +L +RR K  + I LPS R L Y   + +    +Y+ T   + +
Sbjct: 543 IQSPGI-----AFKCRKLSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597

Query: 587 LMRERTYGGKLT 598
             R +TYGGK  
Sbjct: 598 WERLKTYGGKSC 609



 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/721 (16%), Positives = 208/721 (28%), Gaps = 186/721 (25%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
            L ID ET S  P+           A +   +   +                         
Sbjct: 454  LAIDTETTSLDPML----------ADLAGLSLCAEPGKAFYVPVGHTSGEGQDLFEGKGL 503

Query: 51   -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                     +   L   L D +++ +  N  ++ I+ K+  G+++       T +L+   
Sbjct: 504  LPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRP--LDDTLLLSYVL 560

Query: 104  GLP---SSLKNACL-ALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQ 157
                    +       L           G     I         +               
Sbjct: 561  DAGLTDHGMDVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKAT-------------- 606

Query: 158  LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207
               EY   D + T  L++ L P    E          R +  +   +  RG  ID  L+ 
Sbjct: 607  ---EYAAEDADVTLRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLG 663

Query: 208  KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKS 263
            +L    AQ+  + + +I +L      +      L   LF   G+     +      T   
Sbjct: 664  RLSSDFAQDMARYEAEIYELAGEKF-NLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAG 722

Query: 264  ILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321
            +L       +     IL+    +       + L   ++   GR+  +     A+ TGR S
Sbjct: 723  VLEDLAEQGVDLAARILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYALA-ATTTGRLS 781

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                  QN+P                            A   +R   IA  G+KLV AD 
Sbjct: 782  SSEPNLQNIP------------------------VRNEAGRKIRRAFIAPPGRKLVSADY 817

Query: 382  AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + IE R+LA IA       AFA   DI+  T ++ F  P++ +  E R   K +   + Y
Sbjct: 818  SQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIY 877

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                           L + +          FE +    ++    + +  E    + + G 
Sbjct: 878  G-----ISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMDDTKKKARENGYVETIFGR 932

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             C          +  +                                            
Sbjct: 933  KCH---------YPRIKASN---------------------------------------- 943

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
             PS R L       + + +N                    +Q  + DI+   M +     
Sbjct: 944  -PSERAL------NERAAINAP------------------IQGSAADIIRRAMIHMEAAL 978

Query: 618  --TKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKR 672
               K    ++L VHDE++ E PD     ++  +  +M + P  A    +PL+ +   A+ 
Sbjct: 979  AAEKLSAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAAQN 1038

Query: 673  Y 673
            +
Sbjct: 1039 W 1039


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 225/612 (36%), Positives = 326/612 (53%), Gaps = 24/612 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  Y  D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D 
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+  ++      Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A S +    +    + + +K+    C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC---SYLNT--ATSQ 586
           +Q  G           +L +RR K  + I LPS R L Y   + +    +Y+ T   + +
Sbjct: 543 IQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597

Query: 587 LMRERTYGGKLT 598
             R +TYGGK  
Sbjct: 598 WERLKTYGGKSC 609



 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 228/701 (32%), Positives = 337/701 (48%), Gaps = 31/701 (4%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L++D ET S + L +VG   YAE A   L AYA  D P ++WD T    M  +L   + D
Sbjct: 5   LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTA-EEMHDELYHAMDD 63

Query: 64  ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                 AHN+ F+R +     +     I  +RW C+  +A ++ LP  L + C  L    
Sbjct: 64  ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            + K+ +GK L+  F +   D+      TR  H   W+ F +Y   D+ A RE  +R+  
Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183

Query: 180 LSDGERDL--WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +     +  W LDQ IN RG+++D  L         +E+ ++     +L+ G      Q
Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFT-PGQ 242

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
               R+YL    G +L +   GT + +L    +    +++I   +AS+ ++  K   L  
Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAALDP 302

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE----EILTQTIQALNRGETI 353
           AVS DGR RG LQF GASRT RW+G +FQPQNLP +        E   + ++        
Sbjct: 303 AVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALFF 362

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED------ 407
            + + L +  +R C++A+ GKKLVVADL+ IE RVLAWIA E+WK+KAF   +       
Sbjct: 363 DNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPDL 422

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
             +T  +     P +   K + A GKV +LA GYQGG   ++T A   GL +  F   ++
Sbjct: 423 YNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTIQ 482

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                +   +A  +         E    D++   A E  K AWRA+H    + W  L   
Sbjct: 483 QMVPAQHVAKAWENLASWGHPQLESLEIDEIEWVASETCKLAWRARHPATSKFWYALGGA 542

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------------- 574
               ++  GS+         R V  R ++ + + LPS R L Y +               
Sbjct: 543 AKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAYW 602

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
           G+ S     T Q +R  T+GGK+T N  Q I+RDIL   M  A   GY  VL+VHDE ++
Sbjct: 603 GEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEALT 662

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E PDT  F+   L  ++  NP+WA  LPL A G+EA RY+K
Sbjct: 663 EVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 102/698 (14%), Positives = 191/698 (27%), Gaps = 153/698 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D ET S           Y++ A I   ++A                          +
Sbjct: 354 FAFDTETTSLD---------YSK-AQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRSEI 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L +     +  N  ++  +     GI +       T + +          ++ 
Sbjct: 404 LEKLRPLLENPRKAKLGQNLKYDTHVLANH-GIALRGIA-HDTMLESYVLNSTATKHNMD 461

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +     L       +   GK    I         + PY    A+                
Sbjct: 462 DLAKEYLGVETIHYEDVAGKGAKQIGFQEVSIDQAAPYAAEDADITLQLHQVLNAKLAQH 521

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               EL+       D E  L  +   I + G  ID  ++ +    ++ +   L++    L
Sbjct: 522 PRLLELYS------DMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQHAHDL 575

Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                 +      ++  L+    +            T +S+L    +      LIL   +
Sbjct: 576 AGQTF-NLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQELALDYPLPKLILEYRS 634

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S       + L + +    GR+  +     A  TGR S      QN+P           
Sbjct: 635 LSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIA-ATGRLSSSDPNLQNIP----------- 682

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  GKK+V AD + IE R++A ++ ++  +KAF
Sbjct: 683 -------------IRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAF 729

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           +  +D++  T A+ F    ++V+ + R   K +   L Y        +            
Sbjct: 730 SEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINFGLIY-----GMSSFGL--------- 775

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  L  +  +     + A++ GV     
Sbjct: 776 ------------------------------AQQLGLSRSQAQSYIDLYFARYPGVKNYMD 805

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            + E                                 I     RRL   ++    +    
Sbjct: 806 RIREQAREQGY--------------------------IETLFGRRLYLPEINSRNAARRQ 839

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKN--GYDIVLTVHDEIVSET 636
                 R            +Q  + DI+   M        K      +++ VHDE+V E 
Sbjct: 840 YA---ERTAINAP------MQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEI 890

Query: 637 PDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +         + S+M         +PL  +      +
Sbjct: 891 AEEHVDDCAAKIRSIMCAAAD--LDVPLIVDIGIGNNW 926


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 185/682 (27%), Positives = 286/682 (41%), Gaps = 80/682 (11%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           A++ +   V+  D      +P +L + L D  V   A N+ FER++ ++ LGI  P K W
Sbjct: 3   AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRA 150
            CT  LA   G    L      +   E   K  EGK LI  F K    +  +P      A
Sbjct: 63  RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              + W  F +Y  RDVE    +  RL   P+ D E D++ LDQ IND G  ID +    
Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
              L    + ++ E++  +T   + +      L  +L    G    D+   T+  ++  +
Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREA 239

Query: 269 NI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +       A  ++  RL S+ +++ K  T+ +A   DGR R +LQF GASRT RW+G   
Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299

Query: 326 QPQNLPRQERSEEILTQ---------TIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           Q QNLPR  +  E +T                    + +P+     C+RS  I + G K 
Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKF 359

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +VADL+ IE+ V+ W+    W +   A   D+Y +  A   + P ++     R+  K   
Sbjct: 360 IVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEETKP-HRSKAKPAT 418

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           L  GY+ G           GL                       +   M           
Sbjct: 419 LGAGYRLGGGHMDENGKKTGL---------------------WGYAENMGVH-------- 449

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     E   +A+R     +++ W DL             I  R+      L++   K 
Sbjct: 450 -MTQKEAEESVQAFRDLCPEIVRAWYDLENAVFK------VIRTRQAVVWGCLIIEYTKP 502

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYL-----------------------NTATSQLMRERTY 593
            + I LPS R++ Y   +     +                         + ++  +  ++
Sbjct: 503 FLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSH 562

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
           GGKL ENIVQA++RD+L EG+K A + G+ IV+ +HDEIV+E P+    +V  L S M  
Sbjct: 563 GGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAA 622

Query: 654 NPSWAKGLPLKAEGYEAKRYRK 675
              WA+GLPL A G+E   YRK
Sbjct: 623 ELPWAEGLPLGAAGWEGYFYRK 644


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +          QA +   ++A +                       A 
Sbjct: 346 IAVDTETTSLDYM----------QAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREAT 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +  +  V  N  ++  +     GI +    +  T + +           + 
Sbjct: 396 LAKLKPLLENPDIKKVGQNLKYDMSVLANA-GIQLKGVAF-DTMLESYVFNSVASRHDMD 453

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +  A +    Y   D + 
Sbjct: 454 GLALKYLGHKNISFEEIAGKGAKQL---------------TFNQIALEQAAPYAAEDADI 498

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             + E  L  +   I  RG  ID  L+ +  E +A++  
Sbjct: 499 TLRLHQHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKID 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+   F   G          +  T + +L    +    
Sbjct: 559 ELEQHAHEIAGEPF-NLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   ++   GR+  +     A  TGR S      QN+P  
Sbjct: 618 PKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANA-ATGRLSSSDPNLQNIP-- 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  GK+++ AD + IE R++A ++
Sbjct: 675 ----------------------IRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLS 712

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  ++AFA G+DI+  T A+ F+   + V+ EQR   K +   L Y            
Sbjct: 713 QDEGLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMS-----AFGL 767

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +     +    +    E      L G    L        
Sbjct: 768 ARQLDIPRNEAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYL-------- 819

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 820 -PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 855

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    A    ++  T G       +Q                    +++ VHDE+V
Sbjct: 856 ---------AIQHWIKTETQGE------IQ--------------------MIMQVHDELV 880

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++   +C LM    S    +PL AE      +
Sbjct: 881 FEVDADKADALKEKVCELMAAAAS--LDVPLLAEAGLGDNW 919


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVLQ  +                                     +     RRL   D+
Sbjct: 795 YPGVLQYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL   +                                     +     RRL   D+
Sbjct: 795 YPGVLGYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQNILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L +E  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 169/706 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +IL     +       + L   ++   R   T      + TGR S      QN+P   
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIP--- 680

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A ++ 
Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                   
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLI 765

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +     +  ++
Sbjct: 766 YGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFERY 795

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL+  +                                     +     RRL   D+K
Sbjct: 796 PGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIK 829

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628
                   A  +               +Q  + DI+   M               +++ V
Sbjct: 830 SSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQV 880

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 881 HDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYATEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQITLEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           KL++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 KLEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 201/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51
             + +D ET     +           A +   ++A ++                   E+S
Sbjct: 409 KLIAVDTETDGLDYM----------SANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 458

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + L   L +  +  V  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 459 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNM 516

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +  GEY   D +
Sbjct: 517 DDLAKRYLGHQTIGFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 561

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   +   G  ID D +      I +  
Sbjct: 562 VTMKLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERL 621

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L+    +L      +   T  L+  LF   G+         +  T + +L     +  
Sbjct: 622 TALEMQAHELAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHE 680

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 681 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 738

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA +G K++ AD + IE R++A +
Sbjct: 739 -----------------------IRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 775

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y        +  
Sbjct: 776 SNDAGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYG-----MSSFG 830

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                        +     +     +  
Sbjct: 831 LSRQ---------------------------------------LGISRADAQRYMDLYFQ 851

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV     D+ E                                 +     RRL   +
Sbjct: 852 RYPGVQTFMHDIREKAKAQGY--------------------------VETLFGRRLYLPE 885

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +         +++ 
Sbjct: 886 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEITRDDPDIHMIMQ 936

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  +    + +
Sbjct: 937 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 981


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +        +                            +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +        +                            +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D   
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDANV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIESGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A    G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALDEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 340 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 389

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 390 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 447

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 448 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 492

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 493 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 552

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 553 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 612 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 669 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 706

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 707 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 752

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 753 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 782

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 783 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 816

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 817 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 867

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 868 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 912


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 234 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 283

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 284 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 341

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 342 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDSDV 386

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 387 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 446

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 447 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 505

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 506 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 562

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 563 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 600

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 601 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 646

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 647 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 676

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 677 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 710

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 711 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 761

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 762 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 806


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F+ P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 233/694 (33%), Positives = 324/694 (46%), Gaps = 55/694 (7%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----DETVMCVAHN-SLFERILFKKTLGID 87
           AYA+DDEPV++WD T  S MP DL + LR     +  +  V HN S+F+R++ K   G D
Sbjct: 8   AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYD 146
           IP    I T + A  + LP SL   C  L  S    K + GKALI RF K +  +     
Sbjct: 68  IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLD 204
            T   H   W LF +Y   D+ A RE+F +L     S+ E  +  LDQ INDRG+++D+ 
Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           L     E + + + +L E+  +   G +        LR          + +  + TL  +
Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRELAPAHR---IHNAQKSTLNDL 244

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L+  ++   A  +I  RL ++ +A  K N L    SSD R RG +Q+ GA RT R++G  
Sbjct: 245 LADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKG 304

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETI--ADPLGLASDCVRSCIIASNGKKLVVADLA 382
           FQPQNL R    ++ L + I AL +G      D   L +  VRSCII   G K VVAD +
Sbjct: 305 FQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADYS 364

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE---QRAIGKVMELAL 439
            +E R LAW+AGE+  +  F  G DIY  T  K F    D + KE    R IGK  EL L
Sbjct: 365 NVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGL 424

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK-- 497
           GY GG   F   A + GLDL   ++ +  T     W      + W + Q  +   +    
Sbjct: 425 GYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEK 484

Query: 498 ----------LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                      +   C+ +K+ WR  H   +  W+D+ +     ++  G         V 
Sbjct: 485 DDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVK 544

Query: 548 --------RLVMRRHKRDVHIVLPSSRRLVYS------------------DVKGDCSYLN 581
                       +     + + LPS R + Y                   +V+      N
Sbjct: 545 FSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGEN 604

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
             T Q   + TY GKL EN  QA+ RD+L   + N   NGY IVL VHDEI+ ETPD P 
Sbjct: 605 QLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPE 664

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++V  L  LM + P WA+G PL AEG E KRY K
Sbjct: 665 YNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQSY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNPL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/708 (14%), Positives = 192/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA I   ++A +                       A+
Sbjct: 323 FSFDTETTSLNYM----------QAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQLDRDAV 372

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  +  +++ +  +  GI++       T + +           + 
Sbjct: 373 LNALKPLLEDTGKAKVGQHLKYDKNVLARY-GIELKGIA-HDTMLASYVLNSVAGRHDMD 430

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +    +    Y   D + 
Sbjct: 431 SLAERYLDRHTVHYEDIAGKGAKQL---------------TFNQIDLEQAAPYAAEDADI 475

Query: 170 TRELFKRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P    E             L  +   I   G ++D D +    + +A+  +
Sbjct: 476 TLQLHRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMR 535

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QL 273
           + + +      G   +      L+  LF   G+            T + +L         
Sbjct: 536 QAE-EAAHNEAGESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHP 594

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               IL   A S       + L + +    GR+  +     A  TGR S      QN+P 
Sbjct: 595 LPQWILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP- 652

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G K++ AD + IE R++A +
Sbjct: 653 -----------------------IRSEEGRRIREAFVAEPGHKILAADYSQIELRIMAHL 689

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G++  I+AF  G DI+  T ++ F  P+D+V  EQR   K +                 
Sbjct: 690 SGDETLIRAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVNF--------------G 735

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 736 LIYGMS------------------------------AFGLAKQLGISRGEAQGYVDTYFE 765

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   E                                       RRL   +
Sbjct: 766 RYPGVRDYMERTREQAREQGYVETEF--------------------------GRRLYLPE 799

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           ++              R            +Q  + DI+   M               +V+
Sbjct: 800 IQSRNVPRRQHA---ERTAINAP------MQGTAADIIKRAMIAIHDALEKELPDVRMVM 850

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E P+        L    M +       + L  E   A  +
Sbjct: 851 QVHDELVFEVPEDQAKQTQALVETKMVEAAD--LRVALDVESDIADSW 896


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNPL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 191/701 (27%), Gaps = 159/701 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            ID ET S           Y E A I   + A                          + 
Sbjct: 341 AIDTETTSL---------KYME-AEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVL 390

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             +   L DET   V  N  ++  + K    I++       T + +          ++ +
Sbjct: 391 QKMKPLLEDETPKKVGQNLKYDAHVLKNY-DIELNGIA-HDTMLESYVLNSTASKHNMDD 448

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +  GEY   D + T
Sbjct: 449 LAKHYLGHECIDFESIAGKGAKQL---------------TFNQIPVEQAGEYAAEDADIT 493

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  +            E  L  +   +   G  ++ D + +    I Q  ++
Sbjct: 494 LRLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQE 553

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L+     +  G + +   T  L+   F    +            T + +L   +      
Sbjct: 554 LERKAHDIA-GEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEEVLVELSHDYELP 612

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +IL     +       + L   ++S  +   T      + TGR S      QN+P    
Sbjct: 613 KVILEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSSDPNLQNIP---- 668

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R    A  G  LV AD + IE R++A ++G+
Sbjct: 669 --------------------IRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGD 708

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AF NG+DI+  T A+        V  EQR   K +   L Y              
Sbjct: 709 KGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMS-----AFGLAR 763

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + +          F+ +   + +    ++   +    + L G    L          
Sbjct: 764 QLGIGRSEAQEYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYL---------P 814

Query: 516 GVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            +        +      +      +A  +     + M +                     
Sbjct: 815 EINSRNGMRRQAAERTAINAPMQGTAADIIKRAMIKMHQW-------------------- 854

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                      +Q  + D+              +++ VHDE++ 
Sbjct: 855 ---------------------------IQESAHDV-------------HMIMQVHDELIF 874

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E PD    +V   + S+M         +PL  +      ++
Sbjct: 875 EVPDGQLDAVSAEIKSIMEAAAD--LDVPLLVDVGHGDNWQ 913


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 308 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 357

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 358 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 415

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 416 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 460

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 461 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 520

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 521 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 579

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 580 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 636

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 637 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 674

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 675 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 720

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 721 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 750

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 751 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 784

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 785 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 835

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 836 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIELGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 199/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             ID ET S   +           A +   ++A +                        +
Sbjct: 346 FAIDTETTSIDYMA----------AELVGLSFAVEAGKGAYLPVAHDYEGAPVQLDRDTV 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     V  N  ++  +  K  GI +    +  T + +          ++ 
Sbjct: 396 LAKLKPLLEDTAPRKVGQNLKYDMSVLAKY-GIALNGIAF-DTMLESYCFNSTAGRHNMD 453

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                   +  +    +    Y   D + 
Sbjct: 454 DMALKYLGHKTIHFEDIAGKGAKQ---------------KTFNQIPLEEAAPYAAEDADI 498

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P               ER L  +   +   G  ID D + +    IA    
Sbjct: 499 TLRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLD 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
            L++   ++  G + +   T  L+   F   G          +  T + +L    +    
Sbjct: 559 SLEQQAHEIA-GEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEEVLQELALDYPL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +IL   + +       + L + V   GR+  +      + TGR S      QN+P   
Sbjct: 618 PKIILEHRSLAKLKNTYTDKLPQLVKPSGRVHTSYHQAV-TATGRLSSSDPNLQNIP--- 673

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G KL+  D + IE R++A ++ 
Sbjct: 674 ---------------------IRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQ 712

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++AFA G+DI+  T A+ F    D V+ EQR   K +                   
Sbjct: 713 DKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNF--------------GLI 758

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +     +  ++
Sbjct: 759 YGMS------------------------------AFGLAKQLDIGRAEAQEYIDRYFHRY 788

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL+                  +                           RRL   ++ 
Sbjct: 789 PGVLEYMDRTRAQAHDKEYVETLM--------------------------GRRLHLPEI- 821

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLT 627
              + +        R            +Q  + DI+ + M           ++   +++ 
Sbjct: 822 NARNKMRQ--QAAERTAINAP------MQGTAADIIKKAMLLVADYLSQQAEDEIHLIMQ 873

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  +         LC LM++       +PL AEG     +
Sbjct: 874 VHDELVFEVREGVAEQHKDALCELMSQAAE--LDVPLLAEGGLGDNW 918


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 203/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51
             + +D ET     +           A +   ++A ++                   E++
Sbjct: 357 KLIAVDTETDGLDYM----------SANLVGISFALENGEAAYLPLHLDYLGAPKTLEKN 406

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              S L   L +  +  +  N  F+  +F +  GID+    +  T +L+ T       ++
Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNM 464

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +  GEY   D +
Sbjct: 465 DDLAKRYLGHQTISFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 509

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L    +            E  L  +   +   G  ID D +      I +  
Sbjct: 510 VTMKLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERL 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L+     L      +   T  L+  LF   G+         +  T + +L     +  
Sbjct: 570 TALEMQAYALAGQPF-NLASTKQLQEILFGKLGLPVLQKTPKGAPSTNEEVLEELAYSHE 628

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 629 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                      A   +R   IA +G K++ AD + IE R++A +
Sbjct: 687 -----------------------IRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y   + VF    
Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPA-- 781

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                     +  +     +     +  
Sbjct: 782 ------------------------------------------RLGISRADAQRYMDLYFQ 799

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V     D+ E                                 +     RRL   +
Sbjct: 800 RYPNVQTFIHDIREKAKAQGY--------------------------VETLFGRRLYLPE 833

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLT 627
           +    +          R            +Q  + DI+   M              +++ 
Sbjct: 834 INSSNAMRR---KGTERVAINAP------MQGTAADIIKRAMIKLDGITRDDPDIHMIMQ 884

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  +    + +
Sbjct: 885 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 308 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 357

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 358 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 415

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 416 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 460

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 461 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 520

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 521 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 579

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 580 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 636

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 637 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 674

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 675 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 720

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 721 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 750

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 751 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 784

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 785 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 835

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 836 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D+ET S   L           A I   ++A                        + +
Sbjct: 352 FAFDLETDSLDTL----------SANIIGLSFATAPGVAAYLPVAHDYLDAPAQLDRNDV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +   + V  N  F+R + K    I++   R+  T + +           + 
Sbjct: 402 LARLKPLLENPQALKVGQNLKFDRGVLKSY-DIELQGIRF-DTMLESYALNSVIGRHDMD 459

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +  A +  G Y   D + 
Sbjct: 460 TLALRWLNHKTVTFEEIAGKGKKQL---------------TFNQIALEQAGHYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++    + +     
Sbjct: 505 TLQLHLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF   GI     +      T + +L+   +    
Sbjct: 565 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEHRGLSKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y        +   
Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMS-----SFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++                                            +     +  +
Sbjct: 774 SRQLNIGAG---------------------------------------EAKKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVLQ  +   E  A                              +     RRL   D+
Sbjct: 795 YPGVLQYMESTRELAAEKGY--------------------------VSTLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
               +          R            +Q  + DI+   M                +++
Sbjct: 829 NASNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLEQQTSPDVKMIM 879

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       +    + +LM  +   A  +PL+ +      +
Sbjct: 880 QVHDELVFEVRADAVEAASAQIRALMEGSM--ALDVPLRVDIGVGDNW 925


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L +E  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I      +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 194/706 (27%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           +  D ET S   +          QA +   + A +                        +
Sbjct: 344 VAFDTETTSLNYM----------QAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWV 393

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L  +L DE    V  +  ++  +      I +   ++  T + +           + 
Sbjct: 394 LEQLKPWLEDEGKAKVGQHLKYDANVLNNY-DITLRGIKF-DTMLESYVFNSTGTRHDMD 451

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                   +  +    +    Y   D + 
Sbjct: 452 SLSSKFLGHSTVKFEDIAGKGAKQ---------------KTFNQIDLEQAAFYAAEDADI 496

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + ++P  +            E  L  +   +   G  ID D +      IA   +
Sbjct: 497 TLRLHQAILPKLEKTPELVSVFSDIELPLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQ 556

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +++    +       +      L+  LF   G+            T + IL         
Sbjct: 557 EVEIKAHEEAGQEF-NLSSPKQLQEILFEKQGLPVIKKTPKGQPSTAEPILQELAENYEL 615

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LI+   + +       + L E +   GR+  +      + TGR S      QN+P   
Sbjct: 616 PRLIMEHRSLAKLKSTYTDKLPEMIQHTGRIHTSYHQAV-TATGRLSSTDPNLQNIP--- 671

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G KLV AD + IE R++A ++ 
Sbjct: 672 ---------------------IRTQEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQ 710

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA+ ED++  T A+ F   +D V+ EQR   K +                   
Sbjct: 711 DKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINF--------------GLI 756

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +   + +  ++
Sbjct: 757 YGMS------------------------------AFGLAKQLGISRPEAQKYVQRYFERY 786

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV    +   E                                       RRL   ++K
Sbjct: 787 PGVRTYMETTRENAKEKGYVETIF--------------------------GRRLYLPEIK 820

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628
              + +  A     R            +Q  + DI+   M            G  +++ V
Sbjct: 821 ARNAMMRQAA---ERTAINAP------MQGSAADIIKRAMIKMHNWLADTDLGVKMIMQV 871

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE++ E  +    +    +  +M  +      +PL  E      +
Sbjct: 872 HDELIFEVAEKDLEAAQAKIIDIMQNSTE--IDVPLLVEAGVGDNW 915


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 201/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51
             + +D ET     +           A +   ++A ++                   E+S
Sbjct: 374 KLIAVDTETDGLDYM----------SANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 423

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + L   L +  +  V  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 424 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNM 481

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +  GEY   D +
Sbjct: 482 DDLAKRYLGHQTIGFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 526

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   +   G  ID D +      I +  
Sbjct: 527 VTMKLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERL 586

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L+    +L      +   T  L+  LF   G+         +  T + +L     +  
Sbjct: 587 TALEMQAHELAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEDVLEELAYSHE 645

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 646 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 703

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA +G K++ AD + IE R++A +
Sbjct: 704 -----------------------IRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 740

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y        +  
Sbjct: 741 SNDAGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYG-----MSSFG 795

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                        +     +     +  
Sbjct: 796 LSRQ---------------------------------------LGISRADAQRYMDLYFQ 816

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV     D+ E                                 +     RRL   +
Sbjct: 817 RYPGVQTFMHDIREKAKAQGY--------------------------VETLFGRRLYLPE 850

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +         +++ 
Sbjct: 851 INSSNAMRR---KGAERVAINAP------MQGTAADIIKCAMIKLDEITRDDPDIHMIMQ 901

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  +    + +
Sbjct: 902 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 946


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF    I  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQSIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y     + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEHADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +        +                            +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A +   + +                           
Sbjct: 350 VAVDTETTSLDYMR----------AKLVGISLSTAPGEACYIPFAHDYMGAPEQLQPEFA 399

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L  YL D     V  N  ++  +  +  GI +    +  T + +           + 
Sbjct: 400 LEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GISLRGITF-DTMLESYVLDSVASRHDMD 457

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L           GK                      +  A    G Y   D + 
Sbjct: 458 SLALNYLGEETIKFADVAGKG---------------AAQLTFNQVALDQAGPYAAEDADI 502

Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             + E  L  +   I   G  +D  L+ +  + ++    
Sbjct: 503 TLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQELSARLG 562

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274
           +L+ +  +L  G   +      L   LF    I ++  +      T + +L    +    
Sbjct: 563 ELETEAWELA-GQQFNLASPKQLGEILFEKLQIPVLKKTAKGAPSTKEEVLQELALDYPL 621

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L   ++S  GR+  +    G + TGR S      QN+P  
Sbjct: 622 PKVLLEHRGLAKLKSTYTDKLPTMINSVTGRIHTSYHQSG-TATGRLSSSDPNLQNIP-- 678

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   +A+ G KLV AD + IE R++A ++
Sbjct: 679 ----------------------IRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHLS 716

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ G+DI+  T A+ F    ++V+ +QR   K +                  
Sbjct: 717 EDPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINF--------------GL 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +         + +  +
Sbjct: 763 IYGMS------------------------------AFGLARQLGINRKQAAEYIELYFTR 792

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV     ++    A                              +     RRL   ++
Sbjct: 793 YPGVQNYMNNIRHSAAEQG--------------------------FVETVFGRRLYLPEI 826

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                    A     R            +Q  + DI+   M N             I++ 
Sbjct: 827 NASNGMRRQAA---ERTAINAP------MQGTAADIIKLAMINVHNWLETSDLTSKIIMQ 877

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P++    V   L  LM         +PL  +      +
Sbjct: 878 VHDELVLEVPESEMEEVQKGLNDLMESAAELL--VPLVVDIGVGDNW 922


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S               A +   ++A +                         
Sbjct: 352 FAFDTETDSLDN----------HSANMVGLSFACEPGVAAYVPVAHDYIGAPEQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    W  T + + T         + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAW-DTMLESYTLDSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +  G Y   D + 
Sbjct: 460 SLSERWLKHKTITFEEIAGKGKNQL---------------TFNQIDLEQAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEQKAHDIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAFA G+DI+  T A+ F  P++ VS EQR   K +                  
Sbjct: 719 RDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +    A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM  +   A  +PL  E      +
Sbjct: 880 VHDELVFEVHKDALDAVSKKIHELMESSM--ALDVPLLVEVGSGDNW 924


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGPAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 192/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D+ET S   +           A I   A A                       +  +
Sbjct: 335 FAFDLETSSLNYM----------DAEIVGVALAVGAGEAAYVPLAHEGPDTPTQLDRDRV 384

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     V  N  ++  +  +   I +    +  T + +           + 
Sbjct: 385 LAALKPLLEDPDRAKVGQNLKYDMSVLARY-DIHLEGVAY-DTMLESYVLDSTASRHDMD 442

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +    +   GK                         A +    Y   D + 
Sbjct: 443 SLALKYLGRATVKYEDVCGKGAKQ---------------IPFAQVAVETATRYAGEDADI 487

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   +   G ++D  L+ +    +A+   
Sbjct: 488 TLRLHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMA 547

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QL 273
            L++   +  +G   +      ++  LF   G+         +  T +S+L         
Sbjct: 548 ALEQRAHEEAEGPF-NLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAARGYE 606

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL   + +       + L   +    GR+  +     A  TGR S      QN+P 
Sbjct: 607 LPRLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP- 664

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G KL+ AD + +E R++A +
Sbjct: 665 -----------------------VRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHL 701

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G++   +AFA G DI+  T A+ F    ++V  EQR   K +                 
Sbjct: 702 SGDEGLRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINF--------------G 747

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 748 LIYGMS------------------------------AYGLARQLGIERGEAQAYVDRYFE 777

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV +                                        +     RRL   +
Sbjct: 778 RYPGVKEYMDRTRAEARERGY--------------------------VETLFGRRLYLPE 811

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +               R            +Q  + D++   M           +   +V+
Sbjct: 812 INARNRQRREYA---ERTAINAP------MQGTAADLIKRAMVAVDAWLTEAHSKARMVM 862

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E P     +V   L   M      A  +PL+ +   A  +
Sbjct: 863 QVHDELVLEVPAADVPAVAEGLRERMQAAGELA--VPLEVDVGVADDW 908


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +                
Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   +    +PL  E      +
Sbjct: 863 LQVHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +                
Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLLESGLDARVI 862

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   +    +PL  E      +
Sbjct: 863 LQVHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/708 (15%), Positives = 195/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +          +A I   ++A +                        +
Sbjct: 344 FAFDTETTSLDYM----------EARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLSEAVV 393

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D T + V  N  ++R +      ID+    +  T + +           + 
Sbjct: 394 LGKLKPLLEDPTCLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMD 451

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                    +    +    Y   D + 
Sbjct: 452 SLAKRYLGVETTSFEDIAGKGVKQL---------------TFNQIELEQAAPYAAEDADI 496

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    +            E  L  +   +   G  ID  L+ +  + I     
Sbjct: 497 TLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLA 556

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L   LF   G+ +       +  T + +L+    T   
Sbjct: 557 ELEKQAHELAGQEF-NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYEL 615

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     +       + L   +    GR+  +     A  TGR S      QN+P  
Sbjct: 616 PQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 672

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I S G KLV AD + IE R++A ++
Sbjct: 673 ----------------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLS 710

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA G+DI+  T A+ F   ID V+ + R   K +                  
Sbjct: 711 GDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINF--------------GL 756

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 757 IYGMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFER 786

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +   +                                 +     RRL   D+
Sbjct: 787 YPGVLEYMERTRQQAEAQGY--------------------------VETLFGRRLYLPDI 820

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626
           K   + L        R            +Q  + DI+   M N              +++
Sbjct: 821 KSRNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDSWIRGIEDESIRMLM 871

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +      +  +   M+        +PL  E      +
Sbjct: 872 QVHDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 917


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 338 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANASTPIAMQGVAY-DTMLESYVLDSTATRHDM 446

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 447 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 491

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 492 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 551

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 552 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 610

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 611 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 669

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G KL+ AD + IE R++A 
Sbjct: 670 ------------------------IRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAH 705

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF +  D++  T A+ F  P++ VS +QR   K +                
Sbjct: 706 LAKDEGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 751

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 752 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 781

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 782 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 815

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 816 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLRESGLDARVI 866

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   S    +PL  E      +
Sbjct: 867 LQVHDELVLEVREDLVEQVREGIRPLMSGAAS--LDVPLVVEAGIGSNW 913


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 192/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D ET S   +          +A I   ++A +                     + A+
Sbjct: 333 FAFDTETTSLNYM----------EADIVGLSFAVERGEAAYVPLAHSYPGAPAQLDRDAI 382

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     +  N  ++  +  +   I +    +  T + +           + 
Sbjct: 383 LAALKPLLEDPAKPKLGQNLKYDASVLARY-DIHMQGIAF-DTMLESYVLDSTGTRHDMD 440

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                           +  G Y   D E 
Sbjct: 441 SLALKYLGRSTTHFEDVAGKGAKQ---------------ITFDQVGIEQAGPYAAEDAEV 485

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P               E  L  +   +   G  +D + + +    +    +
Sbjct: 486 TLALHETLWPKLQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQ 545

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
            L+E+   L  G + +      L   LF    +         +  T + +L    +    
Sbjct: 546 ALEEEAHNLA-GQVFNLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEEVLQELALDYPL 604

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 605 PKLLIEHRGLSKLKSTYTDKLPGMINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP-- 661

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G ++V AD + IE R++A ++
Sbjct: 662 ----------------------IRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLS 699

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AF    D++  T A+ F   +D VS EQR   K +                  
Sbjct: 700 KDAGLLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINF--------------GL 745

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A + +L     +     +  +
Sbjct: 746 IYGMS------------------------------AFGLARQLRLDRGEAQRYIDVYFER 775

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +   +                                    +     RRL   ++
Sbjct: 776 YPGVREYMDNTRALAHEQGY--------------------------VETLFGRRLYLPEI 809

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                    A     R            +Q  + DI+   M    +          +++ 
Sbjct: 810 NVRNKNRQQAA---ERTAINAP------MQGTAADIIKRAMITVDRWIADDSVDAKMIMQ 860

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  +     V   LC  M+     A  +PL  E      +
Sbjct: 861 VHDELVLEVAEDQLDPVCDELCKQMSAAAELA--VPLLVEVGRGANW 905


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPSVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I      +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 197/706 (27%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   L          QA I   ++A                          +
Sbjct: 339 FAFDTETTSLDYL----------QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNV 388

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            + L   L +     +  N  ++  +     GI +    +  T + +          + +
Sbjct: 389 LAVLKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMAF-DTMLESYVLNSTTKHDMDS 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  +    +   GK                    + +    +    Y   D + T
Sbjct: 447 LAQIYLQKTTITFEDVAGKGKKQL---------------SFNQIPLEHATPYACEDADIT 491

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L               D E  L  +   +   G +ID  L+ +    +A   ++
Sbjct: 492 LQLHQNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQ 551

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L++   +       +      L+  LF    +            T   +L    I     
Sbjct: 552 LEQAAYEEAGTEF-NLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVLEELAIDYPLP 610

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            LIL   + S       +TL + ++   GR+  +      + TGR S      QN+P   
Sbjct: 611 QLILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSYHQAV-TTTGRLSSTNPNLQNIP--- 666

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  L+ AD + IE R++A ++ 
Sbjct: 667 ---------------------IRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSE 705

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  + A   GEDI+    A+ F+  +D+V+ EQR   K +                   
Sbjct: 706 DEKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVN--------------FGLM 751

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                              Q    A +  +     ++   A+ A++
Sbjct: 752 YGM------------------------------QAFGLAKQLGIERHQAQIYMDAYFARY 781

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV     D+                                         RRL   ++K
Sbjct: 782 PGVKAYMDDMRVLAKQQGYVETVF--------------------------GRRLYIPEIK 815

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628
                    T  + R +          +Q  + D++   M               +++ V
Sbjct: 816 ---------TRHIGRRQAAERTAINAPMQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQV 866

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +T        +   MT+       +PL  +    K +
Sbjct: 867 HDELVFEIAETVIEEAKVAIIEAMTQVAE--LKVPLIVDIGIGKNW 910


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 100/710 (14%), Positives = 200/710 (28%), Gaps = 172/710 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +           A +   ++A ++                      
Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            +   L   L D     +  N  F+  +  +  GI++       T + +           
Sbjct: 394 WVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L       +   GK                      +    +  G Y   D 
Sbjct: 452 MDSLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLEQAGPYAAEDA 496

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L   L P  +            E  L  +   +   G  +D  L+      IA  
Sbjct: 497 DITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAAR 556

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272
             ++++   ++ +    +      L+  LF   G+         +  T + +L    +  
Sbjct: 557 LDEIEKKAFEIAEQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDY 615

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L     +       + L + V+   GR+  +      + TGR S      QN+P
Sbjct: 616 PLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP 674

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A +G K++  D + IE R++A 
Sbjct: 675 ------------------------VRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAH 710

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G+   + AF +G+DI+  T A+  +  I++VS EQR   K +                
Sbjct: 711 LSGDKALLDAFRHGKDIHAATAAEILSLDIEEVSSEQRRRAKAINF-------------- 756

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 757 GLIYGMS------------------------------AFGLAKQLDMGRNEAQNYMNVYF 786

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            ++ GVL+  +      +                              +     RRL   
Sbjct: 787 ERYPGVLEYMESTRNAASEQGY--------------------------VETLFGRRLYLP 820

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDI 624
           D+K              R            +Q  + DI+   M           +    +
Sbjct: 821 DIKSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDGWVQQQPEGNVRL 871

Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE+V E  ++   +V  ++ +LM +  +    +PL A+      +
Sbjct: 872 LMQVHDELVFEVKESALEAVTASVKALMEQAAT--LDVPLIADTGYGDNW 919


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                        +
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYVPVAHDYLDAPEQISRERV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +      I++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
           K   +       +               +Q  + DI+   M          K    +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEKPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E        V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDVVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/710 (14%), Positives = 198/710 (27%), Gaps = 172/710 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +           A +   ++A ++                      
Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            + + L   L D     +  N  F+  +  +  GI++       T + +           
Sbjct: 394 WVLAQLKPLLEDPNQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L       +   GK                      +       G Y   D 
Sbjct: 452 MDSLALRYLEHKNISFEEIAGKGKKQL---------------TFNQIDLAQAGPYAAEDA 496

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L   L P  +            E  L  +   +   G  +D  L+      IA  
Sbjct: 497 DITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAAR 556

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272
             +L++   ++ D    +      L+  LF   G+         +  T + +L    +  
Sbjct: 557 LDELEKKAFEIADQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDY 615

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               LIL     +       + L + V+   GR+  +      + TGR S      QN+P
Sbjct: 616 PLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP 674

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A +G K++  D + IE R++A 
Sbjct: 675 ------------------------VRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAH 710

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G+   + AF +G+DI+  T A+     I++VS EQR   K +                
Sbjct: 711 LSGDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINF-------------- 756

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 757 GLIYGMS------------------------------AFGLAKQLDMGRNEAQDYMNVYF 786

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            ++ GVL+  +      +                              +     RRL   
Sbjct: 787 ERYPGVLEYMESTRNTASEKGY--------------------------VETLFGRRLYLP 820

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDI 624
           D+K              R            +Q  + DI+   M            +   +
Sbjct: 821 DIKSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDNWVQQQPQDEVRL 871

Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE+V E  ++   SV   + +LM +  +    +PL A+      +
Sbjct: 872 LMQVHDELVFEVKESALESVTAEVKALMEQAAT--LDVPLIADAGFGDNW 919


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 29  FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 79  LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +                
Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   +    +PL  E      +
Sbjct: 863 LQVHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 204/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   L           A +   ++A +                        +
Sbjct: 390 VAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLPRDRV 439

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE+++ V  N  F+R + +   GI++       T + +           + 
Sbjct: 440 LELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGI-VFDTMLESYILDSVSGRHDMD 497

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +    +   GK                      +    +  G Y   D + 
Sbjct: 498 SLSSRWLKHTTITFEQIAGKGKNQL---------------TFNQIDLEQAGRYAAEDADV 542

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    + IA +  
Sbjct: 543 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLA 602

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 603 ELEQKAHEIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 661

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 662 PKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 718

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 719 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 756

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ VS EQR   K +                  
Sbjct: 757 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GL 802

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 803 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 832

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +   +                                 +     RRL   D+
Sbjct: 833 YPGVLEYMERTRKQAKEQGY--------------------------VETLDGRRLYLPDI 866

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
               +       +               +Q  + DI+   M          +    +++ 
Sbjct: 867 NASNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQ 917

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM  +      +PL  E      +
Sbjct: 918 VHDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 962


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +D  + AF +  D++  T A+ F  P++ VS +QR   K +                
Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   +    +PL  E      +
Sbjct: 863 LQVHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/708 (15%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA +   ++A                           
Sbjct: 333 FSFDTETNSLDYI----------QAQVVGLSFAVAPGDAAYLPLAHDYLGAPEQLDREQT 382

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D T + V  +  F+R + +   GI +    +  T + +          ++ 
Sbjct: 383 LAKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GIHLQGIAF-DTMLESYVLNSTASRHNMD 440

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN++    +   GK +                    +    +    Y   D + 
Sbjct: 441 DLAKKYLNYTTQTFEDVAGKGVKQL---------------TFNQVELEKAAFYAAEDADI 485

Query: 170 TRELFKRLIPL-----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             + E  L  +   +   G  ID  L+    + I     
Sbjct: 486 TLRLHQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQQIEVRLA 545

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    ++  G   +      L   LF    +         +  T + +L         
Sbjct: 546 ELESQAHEIAGGPF-NLGSPKQLGEVLFEKLQLPVIKKTPKGAPSTAEEVLQELAYDYPL 604

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L   + S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 605 PKLLLEHRSLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 661

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K+V AD + IE R++A ++
Sbjct: 662 ----------------------VRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLS 699

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  ++AFA+G+DI+  T A+  N   + V+ EQR   K +                  
Sbjct: 700 EDDGLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINF--------------GL 745

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 746 IYGMS------------------------------AFGLAKQLGIPRGEAQRYMDRYFER 775

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL   +   E                                 +     RRL   D+
Sbjct: 776 YPGVLTYMERTREQAEQAGY--------------------------VETLFGRRLYLPDI 809

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVL 626
           K     L        R            +Q  + DI+   M                +V+
Sbjct: 810 KAKNMGLR---KAAERAAINAP------MQGTAADIIKRAMIKLADWIKTCDNGTIRMVM 860

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +    + V  +   M    S    +PL         +
Sbjct: 861 QVHDELVFEVREDKLDAYVPVIRQYMMDAAS--LKVPLDVGIGVGDNW 906


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 200/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +D  + AF +G D++  T A+ F  P++ VS +QR   K +                
Sbjct: 702 LAKDDGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   +    +PL  E      +
Sbjct: 863 LQVHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 29  FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 79  LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 203/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 467 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 511

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 571

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 572 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 771

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 801

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+ E                                 +     RRL   D
Sbjct: 802 RYPSVQQFMTDIREKAKTQGY--------------------------VETLFGRRLYLPD 835

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIHHDPNIEMIMQ 886

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 931


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 205/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   L           A +   ++A +                        +
Sbjct: 351 VAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLSRDRV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE+++ V  N  F+R + +   GI++    +  T + +           + 
Sbjct: 401 LELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVSGRHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +    +   GK                      +    +  G Y   D + 
Sbjct: 459 SLSSRWLKHTTITFEQIAGKGKNQL---------------TFNQIDLEQAGRYAAEDADV 503

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    + IA +  
Sbjct: 504 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLT 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 564 ELEQKAHEIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 680 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ VS EQR   K +                  
Sbjct: 718 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +   +                                 +     RRL   D+
Sbjct: 794 YPGVLEYMERTRKQAKEQGY--------------------------VETLDGRRLYLPDI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
               +       +               +Q  + DI+   M          +    +++ 
Sbjct: 828 NASNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQ 878

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM  +      +PL  E      +
Sbjct: 879 VHDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 923


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 207/700 (29%), Positives = 308/700 (44%), Gaps = 73/700 (10%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           M K L IDIET S   L   GV+ YA      I L +Y + DEPV   D  +   +PS +
Sbjct: 1   MKKPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKV 60

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L+ LRD   + VAHN+ FER+     L G  +    W CT V     GLP SL     AL
Sbjct: 61  LRALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKAL 120

Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
                  K +EGK LI  F   CK +  +         H  + W+ +G+Y + DVE    
Sbjct: 121 GLDVQ--KDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETG 178

Query: 173 LFKRL---IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           +  +L     L   E   +  DQ IND G  +D+  V +  +L  + +K+    + +LT 
Sbjct: 179 ISDKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG 238

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ---LAKDLILNRLASSG 286
               S  +   L+ +     G  +  + +   +  L+   + Q       +I     + G
Sbjct: 239 VE--SVTKVQQLKAWA-AAQGYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGG 295

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
           +A+ K + +   +  DG ++G L+F GA  T RW+G   Q QNLPR     + L    Q 
Sbjct: 296 AAVAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQI 355

Query: 347 LNRGET-----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           + +G+T       +P+ + +  VR+ +      +  V+D + IEARV+AW AGE W +KA
Sbjct: 356 VAKGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKA 415

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F +GEDIYV T +K ++   +  ++  R  GK   LALGYQGGA     M          
Sbjct: 416 FEDGEDIYVATASKMYHVTGE-EAEAMRQKGKQATLALGYQGGANALIVMG--------- 465

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A++  +       + + WR  +  ++ LW
Sbjct: 466 -------------------------------ALRAGIPEEELPELVQLWRKANPNIVNLW 494

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCS 578
             + +     +  GG+           +  +  +  + + LPS R+L Y D K      S
Sbjct: 495 HTVDKAARMAINNGGAKRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKIS 554

Query: 579 YLNTATSQLMR--ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
           YL        R    TYGGKLTEN+VQA SRD+L   +      G   V  VHDE ++  
Sbjct: 555 YLKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIV 614

Query: 637 PDTPYFSVGTLCSLMTK-NPSWAKGLPLKAEGYEAKRYRK 675
           P+     +  + +LMT   P WA GLPL +EG   K YRK
Sbjct: 615 PEGT--KIEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S            A++A +   ++A +                       A+
Sbjct: 354 FAFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            S L   L D     +  +  ++  +     GI++    +  T + +           + 
Sbjct: 404 LSALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMAF-DTMLESYVLDATATRHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                         A +  G Y   D + 
Sbjct: 462 SLALKYLGRGTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L+   +            E  L  +   I   G  +D  L+ +    +  +  
Sbjct: 507 TLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLV 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQL 273
           +L+ +   +      +      L   L+   G  ++  +      T +S+L+        
Sbjct: 567 QLEREAFDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYP 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +I+   + S       + L + ++   GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A+ G KL+ AD + IE R++A +
Sbjct: 684 -----------------------IRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A +   + AF N  D++  T A+ F  P+++VS +QR   K +                 
Sbjct: 721 AQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + A
Sbjct: 767 LIYGMS------------------------------AFGLAKQIDVGRKEAQEYIDRYFA 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +      A                              +     RRL   +
Sbjct: 797 RYPGVLAYMERTRTQAAEQGY--------------------------VETLFGRRLYLPE 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +      +        R            +Q  + DI+   M               ++L
Sbjct: 831 INSKNGAMR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVIL 881

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +C LM+        +PL  E      +
Sbjct: 882 QVHDELVLEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNNW 927


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 200/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A                       + A+
Sbjct: 331 IAFDSETTSLD----------AQQAELVGLSFAVAPLEAAYIPLAHSYMGVPDQLDRDAV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     V  ++ ++  +     GI++    +  T + +           + 
Sbjct: 381 LAALRPILEDPARAKVGQHAKYDMNVLA-HYGIEVRGVAY-DTMLESYVLDSTATRHDMD 438

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                         A +  G Y   D + 
Sbjct: 439 SLALKYLGQGTIRFEDIAGKGAKQL---------------TFDQIALEQAGPYAAEDADV 483

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    +            E  L  +   I   G  +D  L+ +    + ++ +
Sbjct: 484 TLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLELGEKLQ 543

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-QL 273
           +L+ +  +L      +      L   L+   G+ ++  +      T +S+L+        
Sbjct: 544 QLEREAHELAGEPF-NLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLAEQGYP 602

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +I+   + +       + L + ++   GR+  +      + TGR S      QN+P 
Sbjct: 603 LPQVIMRHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 660

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G +LV AD + IE R++A +
Sbjct: 661 -----------------------IRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHL 697

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A +   + AF N  D++  T A+ F    + VS +QR   K +                 
Sbjct: 698 AQDTSLLHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINF--------------G 743

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + A
Sbjct: 744 LIYGMS------------------------------AFGLARQIGVERKEAQAYIDRYFA 773

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +      A                              +     RRL   +
Sbjct: 774 RYPGVLAYMERTRAQAAEQGY--------------------------VETLFGRRLYLPE 807

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +      L        R            +Q  + DI+   M               ++L
Sbjct: 808 IHSKNGALR---KAAERTAINAP------MQGSAADIIKRAMVTVDAWLLESGLDARMIL 858

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +    ++   L   M+     A  +PL  E      +
Sbjct: 859 QVHDELVLEVREDQVEALKAGLLPRMSGAA--ALDVPLLVEAGVGGNW 904


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 29  FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 79  LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 557 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A  +                    + A+
Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D   + V  ++ ++  +       I +    +  T + +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   GK                         A +  G Y   D +
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D +L+      + ++ 
Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
             L+     L      +      L   L+   G+ ++  +      T +++L+       
Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +I+   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A +D  + AF +  D++  T A+ F  P++ V+ +QR   K +                
Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINF-------------- 747

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           ++      +        R            +Q  + DI+   M               ++
Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +  LM+   +    +PL  E      +
Sbjct: 863 LQVHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/708 (14%), Positives = 198/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     +           A +   ++A ++                       +
Sbjct: 346 FAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWV 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D     +  N  F+  +  +  GI++       T + +           + 
Sbjct: 396 LEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHDMD 453

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +  G Y   D + 
Sbjct: 454 SLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLEQAGPYAAEDADI 498

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L P  +            E  L  +   +   G  +D  L+      IA    
Sbjct: 499 TLRLHNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAVRLD 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           ++++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 559 EIEKKAFEIAEQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L     +       + L + V+   GR+  +      + TGR S      QN+P  
Sbjct: 618 PKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 675 ----------------------VRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLS 712

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+  +  I+ VS EQR   K +                  
Sbjct: 713 GDKALLDAFRHGKDIHAATAAEILSLDIENVSSEQRRRAKAINF--------------GL 758

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 759 IYGMS------------------------------AFGLAKQLDMGRNEAQNYMNVYFER 788

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +      +                              +     RRL   D+
Sbjct: 789 YPGVLEYMESTRNAASEQGY--------------------------VETLFGRRLYLPDI 822

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+   M           +    +++
Sbjct: 823 KSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDDWVQQQPEGDVRLLM 873

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++   +V  ++ +LM +       +PL A+      +
Sbjct: 874 QVHDELVFEVKESALEAVTASVKALMEQAA--MLDVPLIADTGYGDNW 919


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
          Length = 605

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 29  FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 78

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 79  LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +        +                            +     RRL   D+
Sbjct: 472 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 505

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 198/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S            A++A +   ++A +                       A+
Sbjct: 337 FAFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAV 386

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D     +  +  ++  +     GI++    +  T + +           + 
Sbjct: 387 LGALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMAF-DTMLESYVLDATATRHDMD 444

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                         A +  G Y   D + 
Sbjct: 445 SLALKYLGRGTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDADV 489

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L+   +            E  L  +   I   G  +D  L+ +    +  +  
Sbjct: 490 TLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLV 549

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQL 273
           +L+ +   +      +      L   L+   G  ++  +      T +S+L+        
Sbjct: 550 QLEREAFDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYP 608

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +I+   + S       + L + ++   GR+  +      + TGR S      QN+P 
Sbjct: 609 LPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 666

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A+ G KL+ AD + IE R++A +
Sbjct: 667 -----------------------IRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHL 703

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A +   + AF N  D++  T A+ F  P+++VS +QR   K +                 
Sbjct: 704 AQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF--------------G 749

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + A
Sbjct: 750 LIYGMS------------------------------AFGLAKQIDVGRKEAQEYIDRYFA 779

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +      A                              +     RRL   +
Sbjct: 780 RYPGVLAYMERTRTQAAEQGY--------------------------VETLFGRRLYLPE 813

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +      +        R            +Q  + DI+   M               ++L
Sbjct: 814 INSKNGAMR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVIL 864

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +C LM+        +PL  E      +
Sbjct: 865 QVHDELVLEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNSW 910


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 191/700 (27%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           +  D ET S  PL           A +   +++           T               
Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            + +   L +  +  V  N  +++ +     GI +       T + +          + +
Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRTHGMDD 450

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                    +    A +   EY   D + T
Sbjct: 451 LAMRHLGVQTITYEQVAGKGAKQ---------------VSFSQVALEQASEYAAEDADVT 495

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P               E  +  +  TI   G  ID D++ +    I Q+   
Sbjct: 496 LQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMA 555

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L++   +L      +      L+  LF   GI         +  T + +L    +     
Sbjct: 556 LEQQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLP 614

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            ++L     +       + L   ++   GR+  +     A  TGR S      QN+P   
Sbjct: 615 KVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIP--- 670

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G  +V AD + IE R++A ++ 
Sbjct: 671 ---------------------VRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQ 709

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +D  + AFA GEDI+  T A+ F    D VS EQR   KV+   L Y             
Sbjct: 710 DDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMS-----AFGLA 764

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L +++ +        F  +     +    +++       +   G    +         
Sbjct: 765 QNLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWV--------- 815

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +         G                                               
Sbjct: 816 PEINSPNGMRRAGAERAAINAPMQGT---------------------------------- 841

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                KL    VQ             + K    +++ VHDE+V 
Sbjct: 842 ----------------AADLIKLAMIAVQG---------WLESEKLATKLIMQVHDELVL 876

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E PD     V   L  LM         +PL AE      +
Sbjct: 877 EVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 193/704 (27%), Gaps = 163/704 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------- 50
            ID ET S  P+           A +   + + +           +              
Sbjct: 362 AIDTETTSLDPML----------AQLVGISLSVEPGEACYIPVGHRGPDVAGMENNGQLS 411

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--S 107
              + + +  +L D++   +  N  ++  +F    G+ +       T + +         
Sbjct: 412 RDTVLARMRAWLEDDSKPKLGQNIKYDIHVFANH-GVTLCGVA-QDTMLESYVLASHRNH 469

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            + +    L N      +   GK                               EY   D
Sbjct: 470 GMDSLAERLLNLKTITYEEVCGKGASQIG---------------FDQIDLARATEYAAED 514

Query: 167 VEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            + T  L +++ P             + E  + ++ Q I   G  ID + +      + Q
Sbjct: 515 ADVTLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQ 574

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT 271
               L++           +      +   LF    + +V  +      T + +L      
Sbjct: 575 RMLSLEQAAYDAAGQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAED 633

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                L+L+    +       + L + V+ + GR+  +     A  TGR +      QN+
Sbjct: 634 YPLPKLLLDYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATA-VTGRLASTEPNLQNI 692

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IAS G  +V AD + IE R++A
Sbjct: 693 P------------------------VRTEEGRRIREAFIASPGSVIVSADYSQIELRIMA 728

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+G++  ++AFANGEDI+  T ++ F    + VS EQR   KV+   L Y         
Sbjct: 729 HISGDENLLRAFANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMS-----A 783

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L +++ +        F  +     +    +    E    + + G    L     
Sbjct: 784 FGLASNLGIEREAAKHYIDRYFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWL----- 838

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +        +                                            
Sbjct: 839 ----PDINGGSGPRRQAAERAAINAPMQGT------------------------------ 864

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                    KL+   VQ               K     ++ VHD
Sbjct: 865 --------------------AADLIKLSMIAVQG---------WLERDKLQTRQIMQVHD 895

Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E P      V   L  LM         +PL AE      +
Sbjct: 896 ELVLEVPQDELDVVKTRLPELMCSVAQ--LRVPLVAEVGSGANW 937


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 191/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          +A +   ++A +                        +
Sbjct: 346 FAFDTETTSLNYM----------EAELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETL 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              +   L       V  +  ++  +  +  GI++    +  T + +           + 
Sbjct: 396 LEKMKPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIEF-DTMLESYVLNSTATRHDMD 453

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 454 SLADRYLGLKTIKFEDIAGKGKKQL---------------TFNQIELEQAAPYAAEDADI 498

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + +               D ER L  +   I   G  +D  ++ +    +A+   
Sbjct: 499 TLRLHQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSIELAERMV 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+     +      +      L+  LF    I         +  T + +L    +    
Sbjct: 559 ELERQAYDIAGKEF-NLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQELALDYPL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL   + S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 618 PKLILEHRSLSKLKSTYTDKLPLMINPGTGRIHTSYHQAV-TATGRLSSTDPNLQNIP-- 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G K+V AD + IE R++A ++
Sbjct: 675 ----------------------VRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLS 712

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ G DI+  T A+ F   +D+VS +QR   K +                  
Sbjct: 713 QDQGLLDAFSKGADIHRATAAEVFKVELDQVSDDQRRSAKAINF--------------GL 758

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +         + +   
Sbjct: 759 IYGMS------------------------------AFGLAKQLGIARKDAAQYIEHYFET 788

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV     D+                                   +     RRL   ++
Sbjct: 789 YPGVQHYMDDIRAKAQEQGY--------------------------VETLFGRRLYLPEI 822

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
           K   +    A     R            +Q  + DI+   M    K          +++ 
Sbjct: 823 KARNAMRRQAA---ERTAINAP------MQGTAADIIKRAMVTVDKWLAESDFDVRMIMQ 873

Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  DT   S V  +   M         +PL  E    + +
Sbjct: 874 VHDELVFEVRDTQVDSFVEAVKDKMATAAD--LDVPLLVEAGVGENW 918


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 191/700 (27%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           +  D ET S  PL           A +   +++           T               
Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            + +   L +  +  V  N  +++ +     GI +       T + +          + +
Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIVLNGIA-HDTLLQSYVLESHRTHGMDD 450

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                    +    A +   EY   D + T
Sbjct: 451 LAMRHLGVQTITYEQVAGKGAKQ---------------VSFSQVALEQASEYAAEDADVT 495

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P               E  +  +  TI   G  ID D++ +    I Q+   
Sbjct: 496 LQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMA 555

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L++   +L      +      L+  LF   GI         +  T + +L    +     
Sbjct: 556 LEQQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLP 614

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            ++L     +       + L   ++   GR+  +     A  TGR S      QN+P   
Sbjct: 615 KVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIP--- 670

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G  +V AD + IE R++A ++ 
Sbjct: 671 ---------------------VRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQ 709

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +D  + AFA GEDI+  T A+ F    D VS EQR   KV+   L Y             
Sbjct: 710 DDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMS-----AFGLA 764

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L +++ +        F  +     +    +++       +   G    +         
Sbjct: 765 QNLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWV--------- 815

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +         G                                               
Sbjct: 816 PEINSPNGMRRAGAERAAINAPMQGT---------------------------------- 841

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                KL    VQ             + K    +++ VHDE+V 
Sbjct: 842 ----------------AADLIKLAMIAVQG---------WLESEKLATKLIMQVHDELVL 876

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E PD     V   L  LM         +PL AE      +
Sbjct: 877 EVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/707 (14%), Positives = 191/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D ET S   +           A +   ++A +                        +
Sbjct: 330 FAFDTETSSLDYMR----------AEVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMV 379

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D     +  +  ++  +     GI +   R   T + +           + 
Sbjct: 380 LERLRPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIR-HDTMLESYVLNSTATRHDMD 437

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                         + +    Y   D + 
Sbjct: 438 SLAERYLDRKTLHYEDVAGKGAKQ---------------IPFARVSVEDACRYAAEDADV 482

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   I   G  +D+  + +    + +   
Sbjct: 483 TLCLHRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMA 542

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +++ +   +  G   +      ++  L+   G+            T +S+L     T   
Sbjct: 543 EVEAEARAVA-GETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLAETFEL 601

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL   + S       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 602 PRLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 658

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G KL+ AD + IE R++A ++
Sbjct: 659 ----------------------VRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLS 696

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA   D++  T A+ F   +++V+  QR   K +                  
Sbjct: 697 GDANLLAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAIN--------------FGL 742

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     + A+
Sbjct: 743 IYGMS------------------------------AFGLAKQLGIQQKLAQGYIDLYFAR 772

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV        E    +                            +     RRL   D+
Sbjct: 773 YPGVRAYMDRTRESARELGY--------------------------VETLFGRRLHVPDI 806

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           +              R            +Q  + DI+   M               +++ 
Sbjct: 807 QSRNGQRRQYA---ERTAINAP------MQGTAADIIKRAMIALDAWIESSGAPLRMIMQ 857

Query: 628 VHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  +     +  T+   M++    A  +PL  +      +
Sbjct: 858 VHDELVFEVAEDFVSEATATVREHMSRAAELA--VPLMVDIGTGDNW 902


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 29  FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 79  LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNPL---------------TFNQIALEEAGRYAAEDADV 181

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 200/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                        +
Sbjct: 354 FAFDTETDSLDNIT----------ANMVGLSFATEPGIAAYVPVAHDYLDAPEQLSRERV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+  + V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 404 LELLKPILEDDNALKVGQNLKYDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++      +AQ   
Sbjct: 507 TLQLHLKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLT 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +     A  TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVA-ATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +   +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 797 YPGVLEYMERTRAQAKEKGY--------------------------VETLDGRRLYLPDI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
           K   +       +               +Q  + DI+   M          K    +++ 
Sbjct: 831 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQ 881

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       SV   +  LM  +      +PL  E    + +
Sbjct: 882 VHDELVFEVHKDDLDSVSKTIHELMENSMK--LDVPLLVEVGSGENW 926


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTRLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELERKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL  SD+
Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLSDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K        A  +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 206/698 (29%), Gaps = 153/698 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D+ET S   +          +A I   ++A                       +  +
Sbjct: 325 FAFDLETNSLDYM----------EAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQV 374

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     V  N  F+R +     GI++       + + +          ++ 
Sbjct: 375 LARLKPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIH-HDSMLESYVLDSTATRHNMD 432

Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +     L  +    +M  GK              + PY    A+       +     +  
Sbjct: 433 SLALKYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQE 492

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E+ R L++ L      E  L  +   +   G ++D   +    + +A   KKL+++   L
Sbjct: 493 ESLRRLYQEL------EIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEAFDL 546

Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             G   +      ++  L+    +            T +++L    +       +L    
Sbjct: 547 A-GESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQRLLQYRT 605

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S       + L   V+   GR+  +      + TGR S      QN+P           
Sbjct: 606 LSKLKSTYTDRLPLQVNPHTGRVHTSYHQAV-TATGRLSSSDPNLQNIP----------- 653

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G +LV AD + IE R++A ++ ++  + AF
Sbjct: 654 -------------IRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAF 700

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              EDI+  T  + F TP+++V+ EQR   K +                    G+     
Sbjct: 701 EAEEDIHQRTATEVFRTPLEEVTPEQRRSAKAINF--------------GLIYGMS---- 742

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                           +  +  TA +   + +  ++ GV     
Sbjct: 743 --------------------------AHGLGRQLGINRTAAQHYIERYFQRYPGVKAYMD 776

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           ++ +                                 +     RRL   D+    +    
Sbjct: 777 NICQQARQKGY--------------------------VETLFGRRLYLPDIHSRQT---Q 807

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKN--GYDIVLTVHDEIVSET 636
             +Q  R            +Q  + DI+   M +      KN     +++ VHDE+V E 
Sbjct: 808 RRNQAERTAINAP------MQGSAADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFEV 861

Query: 637 PDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +     ++  +   MT        +PL  E      +
Sbjct: 862 AEDKLEITMRAIRENMTAAAQ--LKIPLIVEIGSGANW 897


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 198/706 (28%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM----- 53
           + +D ET S   +          +A +   +++  +                  +     
Sbjct: 312 VSLDTETTSLDQM----------EARLVGISFSVTEGEAAYLPLAHHYAGVPEQLDLAAT 361

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
            + L  +L +     +  N  ++R +     GI +       T + +      L  ++ +
Sbjct: 362 LARLKPWLENPARKKLGQNLKYDRHVLANH-GIALAGVA-DDTLLASYVIESHLTHNMDD 419

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                            +   Y   D + T
Sbjct: 420 LARRHLGESTVSYEEICGKGAKQIG---------------FAEVDIAVASNYAAEDADIT 464

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L + L    +G         E  +  +   +   G  ID   + +    +  +  +L+
Sbjct: 465 LRLNRALAGKLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLE 524

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAK 275
           ++  +       +      L+  LF   GI              T +S+L    +     
Sbjct: 525 QEAYQQAGQPF-NLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLP 583

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            LIL     +       + L   +  D GR+        A  TGR S      QN+P   
Sbjct: 584 KLILQYRGLAKLKSTYTDKLPSLIRPDTGRVHTNYAQAVA-ITGRLSSSDPNLQNIP--- 639

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   IA  G ++V AD + IE R++A ++ 
Sbjct: 640 ---------------------VRTAEGRRVREAFIAPPGHRIVSADYSQIELRIMAHLSD 678

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA+GEDI+ TT A+ F    ++V+ EQR   K +   L               
Sbjct: 679 DANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLI-------------- 724

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+     +  +                                   A +     +  + 
Sbjct: 725 YGMSAFGLAAQLDIE------------------------------RNAAQQYIDRYFMRF 754

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV    +   E                                       RRL   +++
Sbjct: 755 PGVADYMQRTREMAREQGYVETVF--------------------------GRRLYLPEIR 788

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628
                  +      R            +Q  + D++   M    +       G  +++ V
Sbjct: 789 ASNPGRRSGA---ERAAINAP------MQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQV 839

Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E P+     V   L  +M         +PL AE    + +
Sbjct: 840 HDELVLEVPEAELARVKERLPQIMAGVAE--LKVPLLAEVGAGESW 883


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 110/711 (15%), Positives = 194/711 (27%), Gaps = 175/711 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+          QA +   + +             +             
Sbjct: 359 VAIDTETTSLDPM----------QAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQL 408

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
               +   +  +L D +   +  N  ++  +F    GI +       T + +        
Sbjct: 409 SREFVLERMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLRGVA-HDTMLQSYVLASHRN 466

Query: 107 SSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             + +    L +      +   GK                               EY   
Sbjct: 467 HGMDSLAERLLSLKTITYEEVCGKGASQIG---------------FDQIDLARATEYAAE 511

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L +R+ P  +            E  + ++ Q +   G  ID + +      + 
Sbjct: 512 DADVTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELG 571

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q    L++   +       +      +   LF    + +V  +      T + +L     
Sbjct: 572 QRMLALEQSAYEAAGQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAE 630

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    S       + L + V+   GR+  +     A  TGR +      QN
Sbjct: 631 DYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATA-VTGRLASTEPNLQN 689

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   IA  G  +V AD + IE R++
Sbjct: 690 IP------------------------VRTDEGRRIREAFIAEPGSVIVSADYSQIELRIM 725

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A I+G++  ++AFANGEDI+  T A+ F    D VS EQ                     
Sbjct: 726 AHISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQ--------------------- 764

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                                    + +  +  L         A    +   A       
Sbjct: 765 -----------------------RRYAKVINFGLIYGMSAFGLASNLGIERDAARHYIDR 801

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +  ++ GV    ++  +                                       RRL 
Sbjct: 802 YFMRYPGVAHYMEETRQTAREQGYVETVF--------------------------GRRLW 835

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYD 623
             D+ G       A     R            +Q  + D++   M               
Sbjct: 836 LPDINGGSGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQDWLERDGLQTR 886

Query: 624 IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++ VHDE+V E P+     V   L  LM         +PL AE      +
Sbjct: 887 QIMQVHDELVLEVPEHELELVKARLPELMCTVAE--LRVPLVAEVGSGANW 935


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 208/707 (29%), Gaps = 170/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                        +
Sbjct: 355 FAFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+T++ +  N  F+R + +   GI++    +  T + +           + 
Sbjct: 405 LTALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSSRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +    +    Y   D + 
Sbjct: 463 TLAEKHLNHKTTTFEEIAGKGKGQL---------------TFNQIEVEQATLYAAEDADI 507

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   +  +G  ID  ++    + I Q   
Sbjct: 508 TLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLA 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +++++   L      +      L+  LF    + +       +  T + +L     +   
Sbjct: 568 EIEKETFALAGQEF-NLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHEL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   V+S  +   T      + TGR S      QN+P   
Sbjct: 627 PRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP--- 683

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G K+V AD + IE R++A ++ 
Sbjct: 684 ---------------------VRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQ 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA G+DI+  T ++ F  P+D+V+ EQR   K +                   
Sbjct: 723 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFG--------------LI 768

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+     SQ +                               +     +     +  ++
Sbjct: 769 YGMSAFGLSQQI------------------------------GVERKEAQRYMDLYFERY 798

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL   +   +  +                              +     RRL   ++ 
Sbjct: 799 PGVLDYMERTRKQASQQGY--------------------------VETLDGRRLYLPEIN 832

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627
              +    A+    RE           +Q  + DI+ + M            +   +++ 
Sbjct: 833 SKNAIRRKAS---EREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 883

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  ++        +  LM  +   A  +PLK E      +
Sbjct: 884 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 928


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 193/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +          +A I   ++A +                        +
Sbjct: 341 FAFDTETTSLDYM----------EARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVV 390

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D T + V  N  ++R +      ID+    +  T + +           + 
Sbjct: 391 LGKLKPLLEDPTRLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMD 448

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                    +    +    Y   D + 
Sbjct: 449 SLAKRYLGVETTSFEDIAGKGVKQL---------------TFNQIELEQAAPYAAEDADI 493

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    +            E  L  +   +   G  ID  L+ +  + I     
Sbjct: 494 TLRLHQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLA 553

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    +L      +      L   LF   G+ +       +  T + +L+    T   
Sbjct: 554 ELERQAHELAGQEF-NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYEL 612

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     +       + L   +    GR+  +     A  TGR S      QN+P  
Sbjct: 613 PRLLMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 669

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I S G KLV AD + IE R++A ++
Sbjct: 670 ----------------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLS 707

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA G+DI+  T A+ F   +D V+ + R   K +                  
Sbjct: 708 GDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAIN--------------FGL 753

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 754 IYGMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFER 783

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +   +                                 +     RRL   D+
Sbjct: 784 YPGVLEYMERTRQQAEAQGY--------------------------VETLFGRRLYLPDI 817

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626
           K   + L        R            +Q  + DI+   M N              +++
Sbjct: 818 KSRNAGLR---KGAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDESIRMLM 868

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +         +   M+        +PL  E      +
Sbjct: 869 QVHDELVFEIREEKLEEYTAIIKEKMSAAAE--LHVPLLVEAGTGDNW 914


>gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 206/705 (29%), Gaps = 169/705 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             ID ET S   +          QA +   ++A ++                       +
Sbjct: 351 FAIDTETNSLNYM----------QAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSWKTV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            + L   L D  +  V  N  ++  +  +  G+++       T + + T       ++ +
Sbjct: 401 LAALKTVLEDPNIKKVGQNLKYDLTILARH-GVELQGV-VYDTMLESYTLDSTGRHNMDD 458

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L+      +   GK                               EY   D + T
Sbjct: 459 LAKRFLHHDTIHFEDLAGKGKGQL---------------TFDQIEIDKAAEYAAEDADVT 503

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P             + E  L  +   +   G  ID DL+ +  + I     +
Sbjct: 504 FKLHQVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQ 563

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L++   +L      +   T  L+  LF   G+         +  T + +L          
Sbjct: 564 LEQQAHQLAGQAF-NLASTKQLQEILFGKLGLPVLKKTPKGAPSTNEEVLEELAYEHELP 622

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L++     S       + L + +  + GR+  +      + TGR S      QN+P   
Sbjct: 623 KLLVEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAV-TITGRLSSSDPNLQNIP--- 678

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G K+V AD + IE R++A ++ 
Sbjct: 679 ---------------------TRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSA 717

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     AF++G D++ +T A+ F+ P+++V+ +QR   K +                   
Sbjct: 718 DAGLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAIN--------------FGLI 763

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A + ++     +     +  ++
Sbjct: 764 YGMS------------------------------AFGLARQLQIPRNEAQTYIDRYFHRY 793

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV Q   D+ E           +                           RRL   ++K
Sbjct: 794 PGVKQFMNDIQEKAKQQGYVETLL--------------------------GRRLYLPELK 827

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVH 629
                         R            +Q  + DI+ + M +       KN   +++ VH
Sbjct: 828 SSNGMRR---KAAERVAINAP------MQGTAADIIKKAMIDIDRFIADKNDIRMIMQVH 878

Query: 630 DEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E  +        +   +M         +PL  E      +
Sbjct: 879 DELVFEVKEDKVEYYEKIIKDMMENAVK--LSVPLIVEVNFGDNW 921


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESIAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L     +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+ E                                 +     RRL   D
Sbjct: 797 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D+ET S   L           A I   ++A +                      +++
Sbjct: 351 FAFDLETDSLDTL----------SANIVGISFAIEPGKAAYLPVAHDYLDAPAQLDRNSV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLK 110
              L   L D  ++ V  N  ++R + K    I++   ++  T + +      G    + 
Sbjct: 401 LERLKPLLEDPALLKVGQNLKYDRGVLKNY-DIELQGIKF-DTMLESYALSSVGSRHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +    +    Y   D + 
Sbjct: 459 TLSSRWLNHKTVSFEEIAGKGKKQL---------------TFNQIDLEQAAHYAAEDADV 503

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++    + +     
Sbjct: 504 TLQLHLKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLA 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF   GI     +      T + +L+   +    
Sbjct: 564 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILENRGLAKLKSTYTDKLPLMINPITGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IAS G K+V AD + IE R++A ++
Sbjct: 680 ----------------------VRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G DI+  T A+ F   +DKV+ EQR   K +                  
Sbjct: 718 QDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +   +  A                              +     RRL   D+
Sbjct: 794 YPGVLEYMESTRQQAAEKGY--------------------------VSTLDGRRLYLPDI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
               +          R            +Q  + DI+ + M                +++
Sbjct: 828 NASNAMRR---KAAERAAINAP------MQGTAADIIKKAMIAVDGWLTPQSAPDVKMIM 878

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E   +   +    +  LM  +      +PL+ +      +
Sbjct: 879 QVHDELVFEVKTSEVEAATAKIRDLMENSMK--LDVPLQVDVGVGDNW 924


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 197/698 (28%), Gaps = 154/698 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET S  PL           A +    +A +                     +  +
Sbjct: 318 ISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDEV 367

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLK 110
            + +   L D T+  V  N  ++ ++ ++  GI +       T + +           L 
Sbjct: 368 VAQVQPLLEDATLAKVGQNLKYDALVLRRA-GIALRGV-VADTMLQSYLLYPAARSHGLD 425

Query: 111 NACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L +         G  K  I         +  Y    A+          Y + D 
Sbjct: 426 ALAADHLGYKMISYSEVAGTGKKQIGFDEVALDVATRYAAEDAD-----ITLQLYQRFDA 480

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E    L +    +   E  L  +   +   G R+D + +  L    +   K+L++ I +L
Sbjct: 481 ELDGTLRELFETV---EMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQQIYEL 537

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    +     ++    T   +L +         LIL   + 
Sbjct: 538 AGEEF-NINSPKQLGVILFEKLDLPHGKKTKTGWSTAVDVLKNLADKHDVVALILQYRSL 596

Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +       + L   +  D GR+  +      + TGR S      QN+P            
Sbjct: 597 AKLKGTYTDALPLLIHPDSGRIHTSFNQAV-TATGRLSSSDPNLQNIP------------ 643

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +   G+ L+ AD + IE RV+A +A E    ++F 
Sbjct: 644 ------------IRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADEPILQESFR 691

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            GEDI+  T ++ F+   D V  E R   K +                    G+      
Sbjct: 692 QGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINF--------------GVLYGMG----- 732

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A    +     +     +  ++  VL+  + 
Sbjct: 733 -------------------------AFSLAKDLGISNKEAKQYIDHYFERYPAVLEFIEQ 767

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
             +                               +++     RR   SD+      + + 
Sbjct: 768 QKQFGRE--------------------------HLYVETLLGRRCAVSDINSKNGQVRSY 801

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
             +               VQ  + DI+   M    +          +VL VHDE+V + P
Sbjct: 802 AERN---------AVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVFDVP 852

Query: 638 DTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                  V  +   M +       +PL+        +R
Sbjct: 853 KDEVDDVVALVVQEMEQAVE--LRVPLEVSLGRGANWR 888


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 198/698 (28%), Gaps = 158/698 (22%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56
           D ET S   +          +A +   ++A +                        + + 
Sbjct: 356 DTETTSLNYM----------EAKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAK 405

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
           L   L D +++ V  N  ++  +    +GI +    +  T + +          ++ +  
Sbjct: 406 LKPLLEDPSLLKVGQNLKYDMSILAN-VGIALKGVAF-DTMLESYVFNSVASKHNMDDLA 463

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L       +   GK +                    +    +    Y   D + T  
Sbjct: 464 LKYLGHKNISFEEIAGKGVKQL---------------TFNQIPLETAAPYAAEDADITLR 508

Query: 173 LFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L + L P               E  L  +   I  +G  ID  L+ +  + +A++  +L+
Sbjct: 509 LHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELE 568

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           +   ++      +   T  L+   F   G          +  T + +L    +      +
Sbjct: 569 QKAYEIAGEPF-NLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELALDYPLPKI 627

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S       + L   V    GR+  +     A  TGR S      QN+P     
Sbjct: 628 ILEHRSLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIA-ATGRLSSSEPNLQNIP----- 681

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A  G+K++ AD + IE R++A ++ + 
Sbjct: 682 -------------------IRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDK 722

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AFA G+DI+  T A+ F+    +V+ EQR   K +   L Y               
Sbjct: 723 GLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMS-----AFGLARQ 777

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           LD+ +          F+ +     +    +    E      L G    L           
Sbjct: 778 LDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYL---------PA 828

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +        +                                 I  P             
Sbjct: 829 IKDRNAMRRQAAERAA---------------------------INAPM------------ 849

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                TA   + +      +  E   Q                    +++ VHDE+V E 
Sbjct: 850 ---QGTAADIIKKAMINIAQWIETETQG----------------EITMIMQVHDELVFEV 890

Query: 637 PDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 S+   +C LM +  S    + L AE      +
Sbjct: 891 DADKADSLKLKVCELMAQAAS--LDVELLAEAGIGDNW 926


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/708 (14%), Positives = 206/708 (29%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
               D ET S   +          +A +   ++A +                        
Sbjct: 343 YFAFDTETTSLNYM----------EARVVGVSFAVEAGSAAYVPFGHDYVGVEQQLSEDW 392

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
           + + L   L D +   V  N  ++R +     GI++   ++  T + +           +
Sbjct: 393 VLAQLKPLLEDSSRAKVGQNLKYDRNVLANH-GIELNGIQF-DTMLESYVLNSTATRHDM 450

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                      +    Q  G Y   D +
Sbjct: 451 DSLARKYLDVGTIKFEDIAGKGAKQL---------------TFNQIQLQQAGPYAAEDAD 495

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L P               E  L  +   I   G  +  DL+ K    +    
Sbjct: 496 ITLQLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRL 555

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
           ++L+++  +L  G   +      L   LF    +         +  T + +L+   +   
Sbjct: 556 QQLEKEAHELA-GEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAEEVLAELALDYP 614

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + +S   GR+  +      + TGR S      QN+P 
Sbjct: 615 LPRILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 672

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          VR   +A +G K+V AD + IE R++A +
Sbjct: 673 -----------------------IRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHL 709

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  +KAFA G+DI+  T A+ F   +++VS EQR   K +                 
Sbjct: 710 SQDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINF--------------G 755

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 756 LIYGMS------------------------------AFGLAKQIDVGRHEAQEYIDTYFS 785

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV     +     A                              +     RRL   +
Sbjct: 786 RYPGVRDYMDNTRADAAERGY--------------------------VETLYGRRLYLPE 819

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +         A     R            +Q  + DI+ + M +  +          +++
Sbjct: 820 INASNGMRRQAA---ERTAINAP------MQGTAADIIKKAMVDVDRWLLESDVDGQMIM 870

Query: 627 TVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +      V ++  LM+        +PL  +      +
Sbjct: 871 QVHDELVFEVAEPSLDYLVSSVNDLMSGAV--VLDVPLIVDVGIGSNW 916


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 206/707 (29%), Gaps = 170/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +           +          + +
Sbjct: 372 FAFDTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDV 421

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLK 110
            + L   L D+ ++ +  N  F+R + +   GI++    +  T + +           + 
Sbjct: 422 LAALKPILEDKNILKIGQNLKFDRGIMEN-EGIELNGIHF-DTMLESYVLNSVSNRHDMD 479

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +    +    Y   D + 
Sbjct: 480 TLAEKHLNHKTTTFEEIAGKGKGQL---------------TFNQIEVEQATLYAAEDADI 524

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   +  +G  ID  ++    + I Q   
Sbjct: 525 TLLLHQALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLA 584

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +++++   L      +      L+  LF    +         +  T + +L     +   
Sbjct: 585 EIEKETFALAGQEF-NLSSPKQLQEILFDKLQLPVIKKTPKGAPSTNEEVLEELAHSHEL 643

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   V+S  +   T      + TGR S      QN+P   
Sbjct: 644 PRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP--- 700

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G K+V AD + IE R++A ++ 
Sbjct: 701 ---------------------VRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQ 739

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA G+DI+  T ++ F  P+++V+ EQR   K +                   
Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFG--------------LI 785

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+     SQ +                               +     +     +  ++
Sbjct: 786 YGMSAFGLSQQI------------------------------GVERREAQRYMDLYFERY 815

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL   +   +  +                                    RRL   ++ 
Sbjct: 816 PGVLDYMERTRKQASEQGYVETLE--------------------------GRRLYLPEIN 849

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627
              +    A+    RE           +Q  + DI+ + M                +++ 
Sbjct: 850 SKNAIRRKAS---EREAINAP------MQGTAADIIKKAMIAVDNWICNECPADVHMIMQ 900

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  ++   +    +  LM  +   A  +PLK E      +
Sbjct: 901 VHDELVFEVRESYLENANIMIHKLMESSMELA--IPLKVEVGVGNNW 945


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 203/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+ E                                 +     RRL   D
Sbjct: 797 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 926


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 193/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A +   ++A +                         
Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+ V  V  N  ++  +     GI +       T + +           + 
Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSVASRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +    ++   Y   D + 
Sbjct: 453 GLALKYLGHKNIGFEDIAGKGAKQL---------------TFNQIPLEVAAPYAAEDADI 497

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I  +G  ID  L+ +  + +A++  
Sbjct: 498 TLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKID 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
            L+E   ++      +      L++  F   G  +       +  T + +L    +    
Sbjct: 558 TLEEKAYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPL 616

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 617 PKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A ++
Sbjct: 674 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y            
Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMS-----AFGL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F  +     +    +    E      L G    L        
Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYL-------- 818

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                     ++                       
Sbjct: 819 -PEIRDRNAMRRQGAERAAINAPMQGTAADIIKKAMI----------------------- 854

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +Q ++  T G                   M           + VHDE+V
Sbjct: 855 ---------NIAQWIKTETQGE----------------IAMI----------MQVHDELV 879

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++   +C LM K       + L AE      +
Sbjct: 880 FEVDADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 193/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A +   ++A +                         
Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+ V  V  N  ++  +     GI +       T + +           + 
Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSVASRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +    ++   Y   D + 
Sbjct: 453 GLALKYLGHKNIGFEDIAGKGAKQL---------------TFNQIPLEVAAPYAAEDADI 497

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I  +G  ID  L+ +  + +A++  
Sbjct: 498 TLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKID 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
            L+E   ++      +      L++  F   G  +       +  T + +L    +    
Sbjct: 558 TLEEKAYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPL 616

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 617 PKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A ++
Sbjct: 674 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y            
Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMS-----AFGL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F  +     +    +    E      L G    L        
Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYL-------- 818

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                     ++                       
Sbjct: 819 -PEIRDRNAMRRQGAERAAINAPMQGTAADIIKKAMI----------------------- 854

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +Q ++  T G                   M           + VHDE+V
Sbjct: 855 ---------NIAQWIKTETQGE----------------IAMI----------MQVHDELV 879

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++   +C LM K       + L AE      +
Sbjct: 880 FEVDADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 928

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/706 (13%), Positives = 195/706 (27%), Gaps = 169/706 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
            +   D ET S         +  A    I   + A+D +                     
Sbjct: 346 KRFAFDTETTSLD-------YRIA---QIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNRE 395

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            + + +   L DE+V  + H+  ++  + +   GI +    +  T + +           
Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLAGW-YFDTMLASYVLNSVATRHG 453

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L+      +   GK                   +  +    +    Y   D 
Sbjct: 454 MDDVARLYLSHLTTTYEQVAGKGAKQ---------------KTFNQIPLETAAHYAAEDA 498

Query: 168 EATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQE 216
             T  L++ L        +L             +   + + G  +DL  + +L    +  
Sbjct: 499 HVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNT 558

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
            + L+  I+++  G   +      +   LF   G+     +      T +S+L       
Sbjct: 559 MQNLENQIMEIA-GESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKIEHP- 616

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               LIL     S       + L +  + D     T      + TGR S      QN+P 
Sbjct: 617 -IAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIP- 674

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+ L+ AD + IE R++A +
Sbjct: 675 -----------------------IRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHL 711

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  + AF +G+D++  T A+     ++ V+ +QR   K +                 
Sbjct: 712 SQDEALLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FG 757

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +        +   K +  
Sbjct: 758 LLYGMSEF------------------------------GLIRQLGFTRQESQDYIKQYFH 787

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ G+    +   +                                 +     RRL   D
Sbjct: 788 RYPGIYDYMQRTRQVALEQG--------------------------FVETLLGRRLYTPD 821

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628
           +      +        R             Q  + DI+   M    K        ++L V
Sbjct: 822 IDARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQV 872

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +     +   L  +M         +PL  E  + K +
Sbjct: 873 HDELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/710 (14%), Positives = 204/710 (28%), Gaps = 174/710 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +          +A +   +++  +                       +
Sbjct: 345 IAFDTETTSLNYM----------EAQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWL 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLK 110
              L   L D ++  V  N  ++  + ++  GI +   +   T + +      G    + 
Sbjct: 395 LKVLKPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIK-NDTMLASYVFNSVGSRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +         Y   D + 
Sbjct: 453 TLSLQYLNHKPIKFEEIAGKGAKQL---------------TFNQIELAQAAPYAAEDADI 497

Query: 170 TRELFKRLIPL------------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           T  L   L               +D E  L  +   + + G ++D +++ K  E IA + 
Sbjct: 498 TLRLHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKL 557

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
            +L++   ++      +      L+  LF    +         +  T + +L        
Sbjct: 558 DELEQKAFEIAGEEF-NLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEEVLQELAHDYP 616

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             D+IL   + +       + L   ++ D GR+  + Q   A  TGR S      QN+P 
Sbjct: 617 LPDVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVA-ATGRLSSTEPNLQNIP- 674

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          VR   +A  G  +V  D + IE R++A +
Sbjct: 675 -----------------------IRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHL 711

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++AFA G+DI+  T ++ F   +++V+ EQR   K +                 
Sbjct: 712 SQDASLLRAFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNF--------------G 757

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 758 LIYGMS------------------------------AFGLSRQLDIPRHEAQAYMDKYFE 787

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GVL+  ++  E                                 +     RRL   +
Sbjct: 788 RFPGVLEYMENTRETAKKQGY--------------------------VSTLFGRRLPLPE 821

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY----DI 624
           +K        A  +               +Q  + DI+   M        + G      +
Sbjct: 822 IKASNGARRKAAERAA---------INAPMQGTAADIIKRAMIKVGDWIDEKGCQSDVRM 872

Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE+V E       S    L  +M +       +PL AE      +
Sbjct: 873 LMQVHDELVFEIRTEHAESYAKALADVMGEAAD--LDVPLLAEYGFGANW 920


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A +   ++A +                         
Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+ V  V  N  ++  +     GI +       T + +           + 
Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSVASRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +    ++   Y   D + 
Sbjct: 453 GLAIKYLGHKNIGFEDIAGKGAKQL---------------TFNQIPLEVAAPYAAEDADI 497

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I  +G  ID  L+ +  + +A++  
Sbjct: 498 TLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKID 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
            L+E   ++      +      L++  F   G  +       +  T + +L    +    
Sbjct: 558 TLEEKAYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPL 616

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 617 PKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A ++
Sbjct: 674 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y            
Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMS-----AFGL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F  +     +    +    E      L G    L +   R  
Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNA 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      +           +G +    + A +                           
Sbjct: 827 MRR-----QGAERAAINAPMQGTAADIIKKAMIN-------------------------- 855

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +Q ++  T G                   M           + VHDE+V
Sbjct: 856 ----------IAQWIKTETQGE----------------IAMI----------MQVHDELV 879

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++   +C LM K       + L AE      +
Sbjct: 880 FEVDADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/708 (13%), Positives = 184/708 (25%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           +   D ET S   +           A +   A A  D                       
Sbjct: 379 EFAFDTETTSLNYM----------NAELVGFAVAVSD-KAAYIPFGHNYPGAPDQIDKQL 427

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           +       L D+++  +  N  ++  +  +  GI +    +  T + +           +
Sbjct: 428 VIDKFKPLLEDDSLKKIGQNLKYDMSVLAEDAGITLRGVAF-DTMLESYVLDSVATRHDM 486

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L           GK                      +         Y   D +
Sbjct: 487 DSLALKYLGRKTISFTDIAGKGAKQL---------------TFNQIGLHEASPYAAEDAD 531

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P  + E             L  +   I   G  +D  L+    + +A+  
Sbjct: 532 VTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRM 591

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
            +L E    +      +      L   L+    I         +  T +++L        
Sbjct: 592 AELQEKAFDIAGQEF-NLASPKQLGEILYEKLEIPVIKKTPKGAPSTAEAVLQELAHDYP 650

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +I++    +       + L E ++   GR+  +      + TGR S      QN+P 
Sbjct: 651 LPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 708

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  GKK+V  D + IE R++A +
Sbjct: 709 -----------------------VRSEEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHL 745

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+     AF  G DI+  T A+ +   +D+VS   R   K +                 
Sbjct: 746 SGDKGLTDAFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------G 791

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  L     +     +  
Sbjct: 792 LIYGMS------------------------------AFGLAKQLGLPRKEAQEYIDLYFE 821

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV +  +D                                          RRL   +
Sbjct: 822 RYPGVKKYMEDTRALAIDKGYVETVY--------------------------GRRLYLPE 855

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           +               R            +Q  + DI+ + M               +++
Sbjct: 856 IHSKN---GQRRQGAERAAINAP------MQGTAADIIKKAMIKVHDWLETTHFDAKMIM 906

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  D      V  + + M         +PL  +    + +
Sbjct: 907 QVHDELVFEVADDQVDDLVKEVKARMESAAE--LKVPLIVDAGAGENW 952


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 200/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A                          +
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFATAPGVAAYVPVAHDYLDAPDQIPRDRV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              +   L D+  + V  N  F+R + +   GI++    +  T + +           + 
Sbjct: 404 LELMKPVLEDDKALKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++      +AQ   
Sbjct: 507 TLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLT 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +     A  TGR S      QN+P  
Sbjct: 626 PKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVA-ATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +   +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 721 RDKGLLTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 797 YPGVLEYMERTRAQAKEKGY--------------------------VETLDGRRLYLPDI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
           K   +       +               +Q  + DI+   M          K    +++ 
Sbjct: 831 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM  + +    +PL  E    + +
Sbjct: 882 VHDELVFEVHKDDLEAVSRKIHELMENSMT--LDVPLLVEVGSGENW 926


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/706 (13%), Positives = 199/706 (28%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D ET S   +           A +   + + +                        +
Sbjct: 350 FAFDTETTSLNYMA----------AELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWV 399

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              +   L D + + V  +  ++  +      I++    +  T + +           + 
Sbjct: 400 LEQIKPVLEDASQLKVGQHLKYDANVLANY-DIELKGIEF-DTMLESYIFNSTANRHDMD 457

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                   +  +    +    Y   D + 
Sbjct: 458 SLAKKFLSHKSVSFEEIAGKGAKQ---------------KTFNQIELEQAAFYAAEDADI 502

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + +    +            E  L  +   +   G  ID DL+ +    IA   +
Sbjct: 503 TFRLHQAIWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQSSEIATRLE 562

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    ++      +      L+  LF+   + +          T + IL    +    
Sbjct: 563 ELEIKAHEMAGQAF-NLSSPKQLQEILFVKLELPILKKTPKGQPSTAEPILQELALDYEL 621

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +I+   + S       + L E +   GR+  +      + TGR S      QN+P   
Sbjct: 622 PRIIMEHRSLSKLKSTYTDKLPEMIQKTGRIHTSYHQAV-TATGRLSSTDPNLQNIP--- 677

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G KL+ AD + IE R+++ ++ 
Sbjct: 678 ---------------------IRTAEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQ 716

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++AFAN +D++  T A+ F   +D+V+ EQR   K +                   
Sbjct: 717 DPGLLEAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAINF--------------GLI 762

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +   + +  ++
Sbjct: 763 YGMS------------------------------AFGLAKQLGIGRPEAQKYIQRYFERY 792

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV    ++  E                                 +     RRL   D+K
Sbjct: 793 PGVRTYMENTREMAREKGY--------------------------VETLFGRRLYLPDIK 826

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628
              + +  A     R            +Q  + DI+   M               ++L V
Sbjct: 827 ASNAMMRQAA---ERTAINAP------MQGTAADIIKRAMIEMHAWLKDTDLDIKMILQV 877

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE++ E  ++   +    +  +M      A  +PL  E      +
Sbjct: 878 HDELIFEVKESDLSAAQEKILDIMENTS--AIDVPLLVEAGIGDTW 921


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 199/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLL 58
           + ID ET S   +          +A +   ++A +         +         +   L+
Sbjct: 339 IAIDTETTSLNYM----------EAELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKALV 388

Query: 59  -----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
                  L +E +  V  N  ++  +F    GI +   ++  T + +          ++ 
Sbjct: 389 FEKLTPLLENEAIKKVGQNLKYDISIFANA-GIKLKGVQF-DTMLESYVFNSVASKHNMD 446

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 447 DLALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADI 491

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +  TI  +G  ID  L+ +  E +A++  
Sbjct: 492 TLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKID 551

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
            L     ++      +      L+   F   G  +       +  T + +L    +    
Sbjct: 552 DLQTKAHEIAGQPF-NLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 610

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 611 PKIILEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 667

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A ++
Sbjct: 668 ----------------------IRTEEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLS 705

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F+    +V+ +QR   K +   L Y            
Sbjct: 706 QDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMS-----AFGL 760

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +    ++    +    +      L G    L        
Sbjct: 761 AKQLDIPRAEAQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYL-------- 812

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 813 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINV--------------------- 850

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      ++ +   T G                             +++ VHDE+V
Sbjct: 851 -----------AKWIETETNGE--------------------------ITMIMQVHDELV 873

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       S+   +C LM    +    + L AE      +
Sbjct: 874 FEVDADKADSLQVKICELMAAAAT--LDVELLAEAGIGDNW 912


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 203/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 467 DDLAKRYLGHETIAFESIAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 511

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID + +      IA   
Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRL 571

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L+E    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 572 TALEEQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+++ EQR   K +                 
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINF--------------G 771

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRADAQKYMDLYFQ 801

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+ E                                 +     RRL   D
Sbjct: 802 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 835

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPDIEMIMQ 886

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/702 (14%), Positives = 198/702 (28%), Gaps = 159/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S             ++A +   ++A +                        +
Sbjct: 352 FAFDTETDSLD----------TQEARLVGMSFAIEPGHAAYLPLGHDYLDAPVQLPLEEV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108
              +   L  E ++ +  N  ++  + +    I++    +  T + +             
Sbjct: 402 LELMKPILESENILKIGQNLKYDAEVLENY-DIELKGIGY-DTMLESYVLNSVAGMGRHD 459

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN      +   GK                      +  A +    Y   D 
Sbjct: 460 MDSLADRHLNHKTVSFEEIAGKGKKQL---------------TFNQIALEEAANYAAEDA 504

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + L P  + E             L  +   +  +G  ID +++    ++I   
Sbjct: 505 DVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLIDANVLAAQSKVITAR 564

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272
             +L+++  +L      +      L+  LF    +         +  T + +L    +  
Sbjct: 565 LAELEKEAFELAGEEF-NLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNH 623

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               L+L   + +       + L   ++   +   T      + TGR S      QN+P 
Sbjct: 624 ALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIP- 682

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G K++ AD + IE R++A +
Sbjct: 683 -----------------------VRTEEGRRIRQAFIAREGYKVMAADYSQIELRIMAHL 719

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   + AFA G+DI+  T A+ F  P+++V+ +QR   K +   L Y           
Sbjct: 720 SQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIYGMS-----AFG 774

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          FE +     +    + Q  E    + L G    L       
Sbjct: 775 LARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLA------ 828

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +        +                 A++ +  M      +    P         
Sbjct: 829 ---DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDNWLQTEKPH-------- 875

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                              D+L               + VHDE+
Sbjct: 876 ----------------------------------ADML---------------MQVHDEL 886

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E  ++    V   + SLM ++      +PLK +      +
Sbjct: 887 VFEVKESELERVQAQVQSLMEQSMK--LDVPLKVDVGIGDNW 926


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 198/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51
             + +D ET     +           A +   ++A ++                   E++
Sbjct: 357 KLIAVDTETDGLDYM----------SANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKN 406

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              S L   L +  +  +  N  F+  +F +  GID+    +  T +L+ T       ++
Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNM 464

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +  GEY   D +
Sbjct: 465 DDLAKRYLGHQTISFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 509

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   +   G  ID D +      I +  
Sbjct: 510 VTMKLQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERL 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L+     L      +   T  L+  LF   G+            T + +L     +  
Sbjct: 570 TALEMQAHTLAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGVPSTNEEVLEELAYSHE 628

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 629 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                      A   +R   IA +G K++ AD + IE R++A +
Sbjct: 687 -----------------------IRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AFA G+DI+ +T A+ F  P+++V+ EQR   K +   L Y        +  
Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYG-----MSSFG 778

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                     +  +     +     +  
Sbjct: 779 LS---------------------------------------RQLGISRADAQRYMDLYFQ 799

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V     D+ E                                 +     RRL   +
Sbjct: 800 RYPNVQTFIHDIREKAKAQGY--------------------------VETLFGRRLYLPE 833

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLT 627
           +    +          R            +Q  + D +   M              +++ 
Sbjct: 834 INSSNAMRR---KGAERVAINAP------MQGTAADTIKRAMIKLDGITRDDPDIHMIMQ 884

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  +    + +
Sbjct: 885 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 207/707 (29%), Gaps = 170/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                        +
Sbjct: 372 FAFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEV 421

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+T++ +  N  F+R + +   GI++    +  T + +           + 
Sbjct: 422 LTALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSSRHDMD 479

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +    +    Y   D + 
Sbjct: 480 TLAEKHLNHKTTTFEEIAGKGKGQL---------------TFNQIEVEQATLYAAEDADI 524

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   +  +G  ID  ++    + I Q   
Sbjct: 525 TLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLA 584

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +++++   L      +      L+  LF    + +       +  T + +L     +   
Sbjct: 585 EIEKETFALAGQEF-NLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHEL 643

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   V+S  +   T      + TGR S      QN+P   
Sbjct: 644 PRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP--- 700

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   I  +G K+V AD + IE R++A ++ 
Sbjct: 701 ---------------------VRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQ 739

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA G+DI+  T ++ F  P+D+V+ EQR   K +                   
Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFG--------------LI 785

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+     SQ +                               +     +     +  ++
Sbjct: 786 YGMSAFGLSQQI------------------------------GVERKEAQRYMDLYFERY 815

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL   +   +  +                              +     RRL   ++ 
Sbjct: 816 PGVLDYMERTRKQASQQGY--------------------------VETLDGRRLYLPEIN 849

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627
              +    A+    RE           +Q  + DI+ + M            +   +++ 
Sbjct: 850 SKNAIRRKAS---EREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 900

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  ++        +  LM  +   A  +PLK E      +
Sbjct: 901 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 945


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 167 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 216

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 217 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 274

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 275 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 319

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 320 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 379

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 380 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 438

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 439 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 496

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 497 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 533

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 534 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 579

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 580 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 609

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 610 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 643

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 644 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 694

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    K +
Sbjct: 695 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 739


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/709 (15%), Positives = 196/709 (27%), Gaps = 170/709 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------Q 50
           M  +  D ET S                 I   +++ +D                    +
Sbjct: 362 MDWVAFDTETDSLDLFA----------GRIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDR 411

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107
             + +DL  +L D +   V  N+ F+  +     GI +       T + +          
Sbjct: 412 DTVLADLKPWLEDASRTKVMQNAKFDSHMLANH-GITLRGV-LFDTMLESYVLDSTATRH 469

Query: 108 SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            + +     L  S    +   GK                    +      +  G Y   D
Sbjct: 470 DMDSLAAKYLGRSTITFEDIAGKGAK---------------ALSFPEIHLEQAGPYAAED 514

Query: 167 VEATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            + T +L + L P               E+ L  +   +   G R+D   +    + I +
Sbjct: 515 ADVTGQLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIGE 574

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNIT 271
               +++   K       +   T  L+  LF       G         T +  L     +
Sbjct: 575 RIAAVEQAAFKEAGREF-NLGSTKQLKELLFDELKLPVGKKTPKGEPSTDEEALGELVGS 633

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                LIL+    S      ++ L E +    GR+         + TGR S      QN+
Sbjct: 634 HPLPALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAV-TATGRLSSSNPNLQNI 692

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  G KL+ AD + IE R++A
Sbjct: 693 P------------------------IRSEEGRRIRQAFVADPGCKLISADYSQIELRIMA 728

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ ++    AFA GEDI+  T A+ F     +VS  QR   K +               
Sbjct: 729 HLSEDERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINF------------- 775

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  +     +     +
Sbjct: 776 -GLIYGMS------------------------------AFGLAKQLDVPRGEAQAYIDLY 804

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++ GV +  + + +    +                                  RRL  
Sbjct: 805 FARYPGVAKYMERMRQQARQMGYVETVF--------------------------GRRLYL 838

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIV 625
            ++               R            +Q  + DI+   M    K         ++
Sbjct: 839 PEIHSRNGQRRQYA---ERTAINAP------MQGTAADIIKIAMIALHKLLVVPGRARMI 889

Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE++ E P++    +  +    MT        +PL+      + +
Sbjct: 890 LQVHDELIFEVPESDVAEIEPIIRAQMTGAAK--LNVPLEVGIGIGRSW 936


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 194/703 (27%), Gaps = 171/703 (24%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSDL 57
            ET S   +           A +   ++A +                            L
Sbjct: 33  TETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL 114
              L DE  + V  N  ++R +     GI++    +  T + +           + +   
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAE 140

Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       +   GK                      +  A +  G Y   D + T +L
Sbjct: 141 RWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQL 185

Query: 174 FKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             ++ P               E  L  +   I   G +ID  ++    E +     +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278
              ++      +   T  L+  LF   GI  +  +      T + +L    +      +I
Sbjct: 246 KAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     +       + L   ++   GR+  +      + TGR S      QN+P      
Sbjct: 305 LEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP------ 357

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA     +V AD + IE R++A ++ +  
Sbjct: 358 ------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKG 399

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AFA G+DI+  T A+ F  P++ V+ EQR   K +                    G+
Sbjct: 400 LLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGM 445

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A +  +     +     +  ++ GV
Sbjct: 446 S------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGV 475

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           L+  +                                     +     RRL   D+K   
Sbjct: 476 LEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIKSSN 509

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631
                A  +               +Q  + DI+   M               +++ VHDE
Sbjct: 510 GARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDE 560

Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E       +V   +  LM         +PL  E    + +
Sbjct: 561 LVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 195/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +          +A +   ++A +                        +
Sbjct: 340 FAFDTETTSLDYM----------EARVVGVSFAIEPGKAAYVPFGHDYLGAPVQLTEAVV 389

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D   + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 390 LGKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIELQGIAY-DTMLESYVLNSTASRHDMD 447

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK +                    +    +    Y   D + 
Sbjct: 448 SLARRYLNAETISFEEIAGKGVKQL---------------TFNQIELEQAAPYAAEDADI 492

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L               + E  L  +   +   G  I+  L+ +  + I     
Sbjct: 493 TLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTIEPKLLHQQSQEIEVRLA 552

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L   LF   G+ +       +  T + +L+    T   
Sbjct: 553 ELEKQAHELAGQEF-NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYEL 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     +       + L   +    GR+  +     A  TGR S      QN+P  
Sbjct: 612 PQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA-ATGRLSSTDPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I   G KLV AD + IE R++A ++
Sbjct: 669 ----------------------VRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHLS 706

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA G+DI+  T A+ F   ++ V+ + R   K +                  
Sbjct: 707 GDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAIN--------------FGL 752

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 753 IYGMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFER 782

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +   +                                 +     RRL   D+
Sbjct: 783 YPGVLEYMERTRQQADAQGY--------------------------VETLFGRRLYLPDI 816

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626
           K   + L        R            +Q  + DI+   M N              +++
Sbjct: 817 KSRNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDQSIRMLM 867

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +      +  +   M+        +PL  E      +
Sbjct: 868 QVHDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 913


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 198/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGVSFATEEGVAAYVPVAHDYLDAPEQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELEQASPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   +            E  L  +   I   G  ID   +    + IA    
Sbjct: 507 TLRLHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLD 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQQAFEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+     I++VS EQR   K +                  
Sbjct: 721 GDKALLDAFQQGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVN--------------FGL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQQYMDTYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 797 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           K              R            +Q  + DI+ + M    +           +++
Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIESQGQGRVKLLM 881

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 882 QVHDELVFEVQESALAEIESKVQELMESAAQ--LDVPLIAEAGHGDNW 927


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRLDAQKYMDLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/702 (14%), Positives = 205/702 (29%), Gaps = 154/702 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA I   ++A +                        +
Sbjct: 199 FAFDTETTSLDYM----------QAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECV 248

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +     V  N  +++ +      ID+    +  T + +           + 
Sbjct: 249 LAALKPLLENPNKHKVGQNLKYDKHVLLNH-DIDLQGIAY-DTMLESYVCNSVATRHDMD 306

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+ S    +   GK    +                 +    ++   Y   D + 
Sbjct: 307 SLARFYLDRSTIHFEDVAGKKGAKQL--------------TFNQIDIEIAAPYAAEDADV 352

Query: 170 TRELFKRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + + P    E             L  +   I   G  +D  L+ +    + Q  K
Sbjct: 353 TLQLHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLK 412

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+++   +      +      L + LF    + +       +  T + +L    +    
Sbjct: 413 ELEKEAFDIAGEEF-NLSSPKQLGVILFEKLELPIIKKTPKGAPSTAEEVLQELALDYPL 471

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     S       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 472 PKVLIEHRGLSKLKSTYTDKLPQMINPATGRIHTSYHQAV-TATGRLSSSDPNLQNIP-- 528

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++ AD + IE R++A ++
Sbjct: 529 ----------------------IRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLS 566

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++  ++AF  G+D++  T A+ F   +D+V++EQR   K +   L Y            
Sbjct: 567 GDEGLLEAFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMS-----AFGL 621

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +   +S+   ++ Q       + L G    L        
Sbjct: 622 AKQLGVGRNDAQQYIDVYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYL-------- 673

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              +        +      +      +A  +     + + +              L  ++
Sbjct: 674 -PEINARNGMRRQAAERTAINAPMQGTAADIIKRAMIAVDQW-------------LCPTN 719

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
            K +                                     M           + VHDE+
Sbjct: 720 PKDE-------------------SAVNAK------------MI----------MQVHDEL 738

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E  ++   +V   L  +MT        +PL  +      +
Sbjct: 739 VLEVKESDLDAVREKLKRVMTTTVE--LSVPLIVDVGVGDNW 778


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 201/701 (28%), Gaps = 158/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           ++ ID ET S  P            A +   + A                          
Sbjct: 401 RVAIDTETTSKDP----------HAARLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLDE 450

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLK 110
           + + L  +L  +    V  N  ++  +     GI +       T + +          + 
Sbjct: 451 VLAVLKPWLESDAQQKVGQNIKYDMHVLANH-GITLRGV-VDDTMLESYVLEAHRTHGMD 508

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN +    +   GK                         A  +   Y   D + 
Sbjct: 509 ALAGRHLNRTTITYEEVAGKGAK---------------AIGFDQVALDVATPYAAEDADV 553

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P  +            E     +   +   G  +D D +    + +A++ +
Sbjct: 554 TLQLHRTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQ 613

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +   T  L   LF   G+ +V  +      T +S+L    +    
Sbjct: 614 ELERQAHELAGQPF-NLGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLALDYPL 672

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L E V    GR+  T     A  TGR +      QN+P  
Sbjct: 673 PKVLLQWRGLAKLKSTYTDKLPEMVDPKTGRVHTTYSQAVA-ITGRLASSDPNLQNIP-- 729

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A I+
Sbjct: 730 ----------------------VRTPEGRRIREAFIAPPGHQMMSADYSQIELRIMAHIS 767

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAFA+GED++  T ++ F  PI +V+ EQR   KV+   L Y            
Sbjct: 768 QDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMS-----AFGL 822

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +++ +        F  +    ++    + Q  E    + + G    L        
Sbjct: 823 AANLGIERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETVFGRRLWL-------- 874

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                        +L   DV
Sbjct: 875 -PEIGSSNMGRRQMAERAAINAPMQGTAADLI---------------------KLAMIDV 912

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                         +R    G +L    +Q                        VHDE+V
Sbjct: 913 HA-----------WLRRENLGARLV---MQ------------------------VHDELV 934

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E PD     +   L + M         +PL AE    + +
Sbjct: 935 LEVPDAEVERLKTDLPARMAGVAQ--LSVPLLAEVGVGENW 973


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V++EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +                Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/707 (14%), Positives = 190/707 (26%), Gaps = 169/707 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------A 52
               D+ET S   +          +A I     + D           +           +
Sbjct: 351 IFCFDLETTSLNYM----------EADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRAS 400

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
           + + L     D     +  N  ++  +  +   I++   R   T + +           +
Sbjct: 401 VLAALKPLWEDPAKAKIGQNLKYDISVLARY-DIEVAG-RLEDTMLASYVLNATATRHDM 458

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                         A +    Y   DV+
Sbjct: 459 DSLALKYLGEKTISFEEIAGKGAKQL---------------TFDQIALEQAAPYACEDVD 503

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P  DGE             L  +   +   G  +D + +      + +  
Sbjct: 504 ITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRL 563

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
           ++L+    +L      +      L   LF    I         +  T +++L    +   
Sbjct: 564 RELETRAYELAGREF-NLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYP 622

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              +I+     +       + L + V++  R   T      + TGR S      QN+P  
Sbjct: 623 LPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G ++V AD + IE R++A ++
Sbjct: 681 ----------------------IRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA G DI+  T A+ F   +D VS EQR   K +                  
Sbjct: 719 GDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AWGLGRQLHIERNQAQTYIDRYFDR 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +  + +    A                                    RRL   ++
Sbjct: 795 YPGVARFMERIRAQAADDGYVETVF--------------------------GRRLYLPEI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                    A     R            +Q  + DI+   M +  +          +V+ 
Sbjct: 829 NAQNRTRRQAA---ERTAINAP------MQGTAADIIKLAMIDVDRWLREGDFDAWMVMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  +    +    +   M         +PL  E      +
Sbjct: 880 VHDELVFEVKEAQVDAFTDAVRQRMEGAAK--LDVPLTVEANAGDNW 924


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/708 (14%), Positives = 202/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S           Y   A +   ++A +                        +
Sbjct: 334 FAFDTETTSL---------RY-MDADVVGVSFAIEPGEAAYVPFGHDYMGAPEQLDRDTV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            S L   L D     +  N  +++ +     GI++       T + +           + 
Sbjct: 384 LSQLKPLLEDPKKAKLGQNLKYDKNVLANH-GINLNGIA-EDTMLESYVLNSVGSRHDMD 441

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +  G Y   D + 
Sbjct: 442 SLAMQYLGEQTITFESIAGKGAKQL---------------TFNQIELEQAGPYAAEDADI 486

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            +  L  +   +  RG  I    + K  + +A+   
Sbjct: 487 TLRLHQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMA 546

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +   G   +      L+   +   G+         +  T + +L         
Sbjct: 547 ELEKEAHEEA-GESFNLGSPKQLQAIFYDKMGLPVVKKTPKGAPSTAEPVLQELAHEHTL 605

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL   + S       +TL E +    GR+  +      + TGR S      QN+P  
Sbjct: 606 PRLILEHRSLSKLKSTYTDTLPELIHHRTGRIHTSYHQAV-TATGRLSSSEPNLQNIP-- 662

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G KLV AD + IE R++A ++
Sbjct: 663 ----------------------IRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLS 700

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  GEDI+  T A+ F   +D VS +QR   K +                  
Sbjct: 701 GDKGLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINF--------------GL 746

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 747 IYGMS------------------------------AFGLSRQLDVGRHQAQEYIDRYFER 776

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  VL+   ++ +                              D ++     RRL   ++
Sbjct: 777 YPAVLKYMDNIRKQA--------------------------HDDGYVETFYGRRLYLPEI 810

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVL 626
                 +  A     R            +Q  + DI+   M +         ++   ++L
Sbjct: 811 NARNKQMQQAA---ERTAINAP------MQGTAADIIKRAMVSVEDWLQEHHQDDARMIL 861

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  ++   ++   L   M+   S    +PL  E      +
Sbjct: 862 QVHDELILEVRESAVDTIREGLEKRMSAAAS--LDVPLLVEAGVGNNW 907


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 196/703 (27%), Gaps = 161/703 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S             ++A +   ++A +                        +
Sbjct: 356 FAFDTETDSLD----------TQEARLVGMSFAIEAGHAAYLPIGHDYLDAPVQLSLDDV 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108
            + +   L +E +  +  N  ++  + +   GI++    +  T + +             
Sbjct: 406 IAVMKPILENEKIGKIGQNLKYDAEVLENY-GIELKGIAF-DTMLESYVLNSVAGMGRHD 463

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN      +   GK                      +    +    Y   D 
Sbjct: 464 MDSLADRHLNHKTVSFEEIAGKGKKQL---------------TFNQIPLEQAANYAAEDA 508

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + L P  + E             L  +   +  +G  ID   +    ++I   
Sbjct: 509 DVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAPTLAAQSKIITAR 568

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272
             +L++   +L      +      L+  LF    +         +  T + +L    +  
Sbjct: 569 LAELEKQAFELAGEEF-NLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNH 627

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L   + +       + L   ++   GR+  +      + TGR S      QN+P
Sbjct: 628 ELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSRDPNLQNIP 686

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G K++ AD + IE R++A 
Sbjct: 687 ------------------------VRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAH 722

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   + AFA G+DI+  T A+ F  P+D+V+ +QR   K +   L Y          
Sbjct: 723 LSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIYGMS-----AF 777

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L + +          FE +     +    + Q  E    + L G    L      
Sbjct: 778 GLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLA----- 832

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +        +                 A++ +  M      +    P        
Sbjct: 833 ----DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDHWLQTEKPE------- 879

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                               D+L                 VHDE
Sbjct: 880 -----------------------------------ADMLM---------------QVHDE 889

Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E  ++    V   +  LM ++      +PLK E      +
Sbjct: 890 LVFEVKESELEKVQAKVQELMEQSMK--LDVPLKVEVGVGMNW 930


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/717 (14%), Positives = 197/717 (27%), Gaps = 178/717 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51
             +  D ET              A+QA +   +++           T           + 
Sbjct: 342 KLIAFDTETT----------GIDAQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRD 391

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104
           ++   L   L D  ++ V  ++ F+  +            GI +    +  T + +    
Sbjct: 392 SVLLALKPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAF-DTMLESYVLN 450

Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  + +     L+ S    +   GK                           +  G
Sbjct: 451 STATRHDMDSLAQKYLDHSTVSFQDIAGKGAKQL---------------TFDQIPLEQAG 495

Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L               D E  L  +   I  +G  +D  L+   
Sbjct: 496 PYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQ 555

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-VDMSE---GTLKSIL 265
              +  +   L+ +  ++      +      L   L+   G+ +    ++    T + +L
Sbjct: 556 SIELGDKMVALEREAFEIAGEEF-NLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEEVL 614

Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +           +++   + S       + L E ++   GR+  +     AS TGR S  
Sbjct: 615 AKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAS-TGRLSSS 673

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   IA  G KL+ AD + 
Sbjct: 674 DPNLQNIP------------------------VRTAEGRRIRQAFIAPPGYKLLAADYSQ 709

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ ++  + AF N  D++  T A+ F   +  V+ +QR   K +        
Sbjct: 710 IELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINF------ 763

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 +      +     
Sbjct: 764 --------GLIYGMG------------------------------AQKLGKDIGVDTKQA 785

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + A++ GV +         A                                  
Sbjct: 786 KAYIDTYFARYPGVREYMDRTRAQAADQGYVETIF------------------------- 820

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RRL   ++    S      +   R            +Q  + DI+ + M         
Sbjct: 821 -GRRLYLPEI---NSNKPQERAGAERTAINAP------MQGTAADIIKKAMVAVDNWLAS 870

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E  +     V   +   M+   +    +PL  E      +
Sbjct: 871 SGLDARVILQVHDELVLEVREDLVDQVREEIRGHMSGAAT--LDVPLLVEVGVGNNW 925


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 193/703 (27%), Gaps = 158/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
             + ID ET S   +           A +   ++A +                       
Sbjct: 342 KLIAIDTETTSLNYM----------DAKLVGISFAIEAGEAAYLPLAHDYLDAPSQIDMA 391

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
                L   L  +    V  N  ++  +F   +GI +    +  T + +           
Sbjct: 392 TALEKLRPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVHF-DTMLESYVFNSVASRHD 449

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +       L       +   GK                      +         Y   D 
Sbjct: 450 MDGLALKYLGHKNISFEDVAGKGAKQL---------------TFNQIDLDTAAPYAAEDA 494

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + L P  + E             L  +   I  +G  ID  L+ +  + +AQ+
Sbjct: 495 DITLRLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQK 554

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQ 272
             KL+ +  ++      +      L++  F      +       +  T + +L    +  
Sbjct: 555 IDKLELEAYEIAGEKF-NLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEEVLVELALDY 613

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +IL   + +       + L   V+ + GR+  +     A  TGR S      QN+P
Sbjct: 614 PLPKIILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANA-ATGRLSSSDPNLQNIP 672

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G+K++ AD + IE R++A 
Sbjct: 673 ------------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAH 708

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   + AFA G+DI+  T A+ F    ++V+ EQR   K +   L Y          
Sbjct: 709 LSQDKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMS-----AF 763

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                LD+ +        + F  +     +    +    E      L G    L      
Sbjct: 764 GLAKQLDIPRNEAQTYIDTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYL------ 817

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +        +                                 I  P        
Sbjct: 818 ---PEIRDRNAMRRQAAERAA---------------------------INAPM------- 840

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                     TA   + +         +   Q                    +++ VHDE
Sbjct: 841 --------QGTAADIIKKAMINIANWIKTETQG----------------EITMIMQVHDE 876

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E  +    ++   +C LM +       + L AE      +
Sbjct: 877 LVFEVDEAQAETLKAKICLLMAQAAD--LDVTLLAEAGIGNNW 917


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 409 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 467 DDLAKRYLGHETIAFESIAGKGKGQL---------------TFNQIPLEQATEYAAEDAD 511

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 571

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 572 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 771

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 801

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 802 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 835

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 886

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLNAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 197/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 308 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 357

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 358 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 415

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 416 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 460

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 461 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 520

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 521 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 579

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 580 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 636

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 637 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 674

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 675 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 720

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 721 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 750

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 751 YPGVLEYMERTRAQAKEQGY--------------------------VETLEGRRLYLPDI 784

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 785 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 835

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 836 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 880


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L           A +   ++A +                        +
Sbjct: 357 FAFDTETDGLDTLT----------ANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  F+R +  +   I++    +  T + +           + 
Sbjct: 407 LKQLKPILEDEKQLKVGQNLKFDRGVLLRY-DIELKGIAF-DTMLESYVLDSVSGRHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +    Y   D + 
Sbjct: 465 SLADRYLGHKTVSFEEIAGKGKNQL---------------TFNQIALEQAAPYAAEDADV 509

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P             D E  L  +   I   G  ID +++    + +A    
Sbjct: 510 TLQLHQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQNILAAHSKELAIRLN 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L +    +   T  L+  L+    + ++  +      T + +L+   +    
Sbjct: 570 ELENKAHELAEEPF-NLSSTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVILEYRGLAKLKSTYTDKLPLMINPQSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     ++ AD + IE R++A ++
Sbjct: 686 ----------------------VRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  +KAFA G+DI+  T A+ F TP++KVS EQR   K +   L Y            
Sbjct: 724 KDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMS-----AFGL 778

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 779 SRQLNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYL-------- 830

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                     +          +  P + R      
Sbjct: 831 -PDIKSSNAMRRKGAERAAINAPMQGTAADI----IKRAMISVADWLKQPDAPR------ 879

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                           +R I+                 VHDE+V
Sbjct: 880 --------------------------------ARIIM----------------QVHDELV 891

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E            + +LM  + + A  +PLK +    + +
Sbjct: 892 FEVHKDDVEVASEKIRNLMEASMTLA--VPLKVDVGTGENW 930


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 196 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 245

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 246 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 303

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 304 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 348

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 349 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 408

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 409 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 467

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 468 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 524

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 525 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 562

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 563 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 608

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 609 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 638

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 639 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 672

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 673 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 723

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 724 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 768


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/707 (14%), Positives = 197/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L           A +   + A                          +
Sbjct: 353 FSFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPTQLDRDTV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +E +  +  N  F++ +  +  GID+       T + +           + 
Sbjct: 403 LAQLKPLLENEAIGKIGQNLKFDKGVMARY-GIDLRGI-VFDTMLESYVLDSVAGRHDMD 460

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 461 SLSERYLQHKTITFEEIAGKGKNQL---------------TFNQIPLEQAAVYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    + +             L  +   +   G  ID  ++ +  + + Q   
Sbjct: 506 TLRLHETLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDTTILAEHSQELTQRLA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    +L  G   +      L   L+    +         +  T + +L+   +    
Sbjct: 566 ELEVRAHELA-GEAFNLASPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++    R+  +      + TGR S      QN+P  
Sbjct: 625 PKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 682 ----------------------VRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAF++G DI+  T A+ F  P+DKV+ EQR   K +                  
Sbjct: 720 RDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLSRQLGIARNEAQKYMNLYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +  +   +  A                              +     RRL   D+
Sbjct: 796 YPGVQEYMERTRQQAADQGY--------------------------VSTLDGRRLYLPDI 829

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
               +    +     R            +Q  + DI+ + M          K    +++ 
Sbjct: 830 HSRNAM---SRKAAERAAINAP------MQGTAADIIKKAMIAIDDWLQQEKPLATMLMQ 880

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E   +    V   + +LM         +PL+ +      +
Sbjct: 881 VHDELVFEVHHSVLDEVSAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 925


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 187/700 (26%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A +   ++A +                          
Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +       T + +           +  
Sbjct: 396 EKLRPLLEDAKIKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSIASRHDMDG 453

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 454 LALKYLGHKNIAFEDIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 498

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++  +
Sbjct: 499 LRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDE 558

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L+     +      +      L++  F   G          +  T + +L    +     
Sbjct: 559 LETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLP 617

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 618 KVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 673

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G+K++ AD + IE R++A ++ 
Sbjct: 674 ---------------------IRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQ 712

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y             
Sbjct: 713 DAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGLA 767

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    E      L G    L         
Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYL--------- 818

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                      ++                        
Sbjct: 819 PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS----------------------- 855

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +  ++  T G                   M           + VHDE+V 
Sbjct: 856 ---------IADWIKTDTQGE----------------IAMI----------MQVHDELVF 880

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C LM K  +    + L AE      +
Sbjct: 881 EVDADKAETLKLKVCELMAKAAN--LDVELLAEAGIGDNW 918


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 196/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMP 54
            +D ET S               A I   + +                       +  + 
Sbjct: 332 ALDTETTSLDSFA----------ARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVL 381

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112
           + L  +L       V  N+ +++ +F    GI +       T + +          L   
Sbjct: 382 ARLKSWLESAAHKKVLQNAKYDQHVFANH-GIALSGIA-HDTMLQSYVIESDKGHDLGQL 439

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C   L  +    +   GK                           +    Y   D + T 
Sbjct: 440 CTRHLGLATIAYEDLCGKGAKQ---------------ITFDQVDIERAATYAAEDSDVTL 484

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +   L P             + E     +   I   G  ID D++ +    + Q+   L
Sbjct: 485 RVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMAL 544

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKD 276
           +    +L      +      L   LF   G+ +   +      T + +LS   +      
Sbjct: 545 EAQAYELAGQPF-NLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPK 603

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L   + S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 604 LLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQA-AVVTGRLASSDPNLQNIP---- 658

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R+  IA  G  +V AD + IE R++A ++G+
Sbjct: 659 --------------------VRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGD 698

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  + AFA+GED++  T  + F     +V  +QR + K +                    
Sbjct: 699 ERLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFG--------------LIY 744

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A +  L  +A +     + A++ 
Sbjct: 745 GMS------------------------------AFGLARQLGLERSAAQTYIDRYFARYP 774

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +  ++  E          +                            RRL + D++ 
Sbjct: 775 GVARYMEEARESARQHGYVETAF--------------------------GRRLWFPDIRS 808

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629
                        R            +Q  + D++   M               ++L VH
Sbjct: 809 SNGNRRQGA---ERAAINAP------MQGTAADLIKLAMIAVQNWLEKSALKSRLILQVH 859

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE++ E PD     V   L  LM +       +PL  E      +
Sbjct: 860 DELLLEVPDGELMDVRTHLPRLMGQVAE--LKVPLVVEVGVGPNW 902


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/719 (14%), Positives = 199/719 (27%), Gaps = 184/719 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET S   +           A +   +   +           +            
Sbjct: 345 HVAVDTETTSLNEMR----------AELVGISLCVEAGIACYIPLIHKAAASDDLFGSAD 394

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                   + +   L   L D  V+ +  N  ++  +F +     +    +  T +++  
Sbjct: 395 LAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY---GVKVAPFDDTMLMSYA 451

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                   S+ +     L  S    K  +  GK+ I        D+              
Sbjct: 452 QNAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAITFDKVPVADAV------------- 498

Query: 157 QLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLV 206
               +Y   D + T  L++ L PL             ER L  +   +   G ++D D +
Sbjct: 499 ----KYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTL 554

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262
            ++    AQ+   L+ +I +   G   +      L   LF    +      +     T  
Sbjct: 555 SRMSNAFAQKMAGLEAEIHEKA-GQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGA 613

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
            IL           L+L+    S       + L + ++   GR+  +    GA+ TGR +
Sbjct: 614 DILEDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLA 672

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   +A  G  L+  D 
Sbjct: 673 STDPNLQNIP------------------------IRSEEGRRIREAFVAEEGNVLLALDY 708

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +A  D   +AF NG DI+  T ++ FN P++ +    R   K +      
Sbjct: 709 SQIELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAIN----- 763

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A   ++   
Sbjct: 764 ---------FGVIYGISGF------------------------------GLARNLRIPRA 784

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +  +  G+     +  E                                 + 
Sbjct: 785 EAQAFINTYFERFPGIRTYMDETVEFAKE--------------------------HNFVQ 818

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617
               R++   D+    +          R            +Q  + D++   M       
Sbjct: 819 TLFGRKIHTPDI----NAKGPGAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAI 868

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
                 ++L VHDE+V E  +     V   +  +M      A    +PL  +  +   +
Sbjct: 869 KDLPAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAAEPAIKLTVPLTVDAGQGANW 927


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 198/709 (27%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET              A+QA +   ++A +                       A+
Sbjct: 336 FAFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAV 385

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D     V  N+ ++  +    +  I++    +  T + +           +
Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPPIEMRGVAY-DTMLESYVLNSTATRHDM 444

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+ +    +   GK                      +       G Y   D +
Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQITLDKAGPYAAEDAD 489

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L               D E  L  +   I  +G  +D +L+      +  + 
Sbjct: 490 ITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKM 549

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272
            +L+    +L  G   +      L   L+   G+ ++  +      T +++L        
Sbjct: 550 AELELRAYELA-GETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGY 608

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G KL+ AD + IE R++A 
Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF N  D++  T A+ F   ++ V+ +QR   K +                
Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINF-------------- 749

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D+      L        R            +Q  + DI+   M               ++
Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVI 864

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +   M++       +PL  E      +
Sbjct: 865 LQVHDELVLEVREDLVEQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 190/701 (27%), Gaps = 160/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           +  D ET S   +           A +   +++ +                        +
Sbjct: 341 VAFDTETTSLNYMA----------AELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWV 390

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L  +L D++   V  +  ++  +      I +    +  T + +           + 
Sbjct: 391 LEQLKPWLEDDSKAKVGQHLKYDANVLNNYQ-ITLRGIAY-DTMLESYVYNSVSSRHDMN 448

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L  +    +   GK                   +  +    ++   Y   D + 
Sbjct: 449 TLASKFLGHTCVSFEDIAGKGAKQ---------------KTFNQIDLEVAAFYAAEDADI 493

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + + P  +            E  L  +   +   G  ID +L+      IA + +
Sbjct: 494 TLRLHQAIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQ 553

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    +   G   +      L++ LF   G+            T + IL         
Sbjct: 554 ELEIKAHEEA-GESFNLSSPKQLQVILFEKQGLPVIKKTPKGQPSTAEPILQELAQDYEL 612

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LI+   + S       + L E +   GR+  +      + TGR S      QN+P   
Sbjct: 613 PRLIMEHRSLSKLKSTYTDKLPEMIQKTGRIHTSYHQA-ITATGRLSSTDPNLQNIP--- 668

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G KLV AD + +E R++A ++ 
Sbjct: 669 ---------------------IRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQ 707

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AF    D++  T A+ F   +D+V+ EQR   K +   L Y             
Sbjct: 708 DSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMS-----AFGLA 762

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L + +          FE +   + +    ++   E    + + G    L         
Sbjct: 763 KQLGIGRPEAGKYIKRYFERYPGVQQYMENTREGAKEKGYVETIYGRRLYL--------- 813

Query: 515 QGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             +      + +      +      SA  +     + M                      
Sbjct: 814 PDIKAKNAMMRQAAERTAINAPMQGSAADIIKRAMIKMHDWL------------------ 855

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                        Q                    +++ VHDE++
Sbjct: 856 -----------------------------QGT-------------DLDVKMIMQVHDELI 873

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +    +    +  +M  +      +PL  E      +
Sbjct: 874 FEVAEKDLEAAQKKIVDIMQNSSK--IDVPLLVEAGVGDNW 912


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/710 (15%), Positives = 211/710 (29%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET S   +          QA       A             +            
Sbjct: 346 YVAVDTETTSLNEM----------QAEFAGICLAVVPGEACYIPVGHKVGDGEGLFADDK 395

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                     + + L   L D  ++ +  N+ ++  +F +     +       T +++  
Sbjct: 396 LAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRH---GLNVAPIDDTMLMSYA 452

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ I        D+  Y    A+  ++ 
Sbjct: 453 MFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAITFDKVKIEDAVKYAAEDADVTLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R+   T  +++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQLFKPRLHREKVTT--VYETL------ERPLVPVLAQMEMHGVQVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF   G++     +     T   +L      
Sbjct: 565 KMAGLEAEIHELA-GQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLEDLAAQ 623

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L   +  D GR+  +    GAS TGR +      QN+
Sbjct: 624 HDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSYLQTGAS-TGRLASTDPNLQNI 682

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 683 P------------------------IRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILA 718

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +AG +   +AF +GEDI+  T ++ F+ P+D+++ + R   K +               
Sbjct: 719 HVAGIESMKQAFRDGEDIHAATASEMFDVPLDEMTPDVRRQAKAINF------------- 765

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 766 -GVIYGISGF------------------------------GLARNLRIARGEAQGFIDRY 794

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             K+ G+ +   D                                   H+     R++  
Sbjct: 795 FEKYPGIKEYMDDTVAFAKEHG--------------------------HVATLFGRKIHT 828

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY----DIVL 626
                + +          R            +Q  + DI+   M             ++L
Sbjct: 829 P----EINAKGPHAGFARRAAINAP------IQGSAADIIRRAMIRMPDAISGLPVKMLL 878

Query: 627 TVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +     +V  +  +M     P+    +PL  +  +   +
Sbjct: 879 QVHDELIFEVEEGGVDKAVSVIRDVMEGAADPAVKLDIPLVVDAGQGANW 928


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 221/588 (37%), Positives = 318/588 (54%), Gaps = 22/588 (3%)

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEY 162
           G   +L   C  L   +   K +EGKALI  FCK    +S     T   H + W+ F  Y
Sbjct: 16  GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75

Query: 163 CKRDVEATRELFKRLIPLSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              D+EA RE++KRL   +    E  LW  DQ INDRG  +D++L     + + QE+K+L
Sbjct: 76  AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            +   ++TDG ++++ Q  AL  ++    G++L DM   TL+  ++  ++    K+L+  
Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAI 195

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           RL +S ++  K   L + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E +
Sbjct: 196 RLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQI 255

Query: 341 TQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
            + I+AL  G       + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+W
Sbjct: 256 DEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEW 315

Query: 398 KIKAFANG-----EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           K+ AF         D+Y   YAKAF+   D V K  R IGKVMEL LGY GG   F T A
Sbjct: 316 KLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFA 375

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GLDL   +         +   +A+S +     +   + + +++   AC+ +K+ WR 
Sbjct: 376 LVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRR 434

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            H      W +L       +        ++      L +RR    + I LPS R + Y  
Sbjct: 435 AHPATCDFWYELECTVRTAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPS 489

Query: 573 VKGD---CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
              +    +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   M      GY IVLT
Sbjct: 490 PVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLT 549

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE+++E+PDT  F+   L +L++ NP WA  +PL A G+EA  YRK
Sbjct: 550 VHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 201/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +     +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    K +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 926


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/708 (15%), Positives = 199/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 352 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLDRDWV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 402 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 459

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 460 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDEASPYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   D            E  L  +   I   G  ID   +    + IAQ   
Sbjct: 505 TLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLD 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 565 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K++  D + IE R++A ++
Sbjct: 681 ----------------------IRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+   T ID+VS EQR   K +                  
Sbjct: 719 GDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 795 YPGVMQYMEDTRSAAADQGYVETIF--------------------------GRRLHLPEI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           K              R            +Q  + DI+ + M    +           +++
Sbjct: 829 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGQGRVKLLM 879

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 880 QVHDELVFEVEESSLAEIESKVQQLMESAAD--LDVPLVAEAGHGDNW 925


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/702 (14%), Positives = 198/702 (28%), Gaps = 161/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D+ET S   +          +A I     A +                       A+
Sbjct: 346 FCFDLETTSLSYM----------EADIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAV 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L     D     +  N  ++  +  +  G ++       T + +           + 
Sbjct: 396 LEALAPLWADAGKAKIGQNLKYDISVLARH-GHEVAG-PLHDTMLESYVLDSTATRHDMD 453

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +    Y   DV+ 
Sbjct: 454 SLALKYLGEKTVSFEDIAGKGAKQL---------------TFNQIALEQAAPYACEDVDI 498

Query: 170 TRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            ER L  +   +   G  +D + + +    + +  +
Sbjct: 499 TLRLHRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIR 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L   LF    I         +  T +++L    +    
Sbjct: 559 ELEQRAHELAGREF-NLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAEAVLEELALDYPL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     S       + L + V    GRL  +      + TGR S      QN+P  
Sbjct: 618 PKVIMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAV-TATGRLSSSDPNLQNIP-- 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G +LV AD + IE R++A ++
Sbjct: 675 ----------------------IRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLS 712

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA G DI+  T A+ F   +DKVS EQR   K +   L Y            
Sbjct: 713 GDKGLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMS-----AWGL 767

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +++    +     F+ +     +   ++ Q  E    + + G    L        
Sbjct: 768 GRQLHIERNQAQIYIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHL-------- 819

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              +    ++  +G     +      +A  +     + +     D               
Sbjct: 820 -PEIHSQNRNRRQGAERTAINAPMQGTAADIIKRAMIDVDGWLADG-------------- 864

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                              DI  + M         +V+ VHDE+
Sbjct: 865 -----------------------------------DI--DAM---------MVMQVHDEL 878

Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E  ++   + +  + + M         + L  E      +
Sbjct: 879 VFEVAESEVDAFMDQVKTRMENAAE--LDVALTVEAESGANW 918


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 195/700 (27%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
             +D+ET S  PL          +A I   + ++ D                       +
Sbjct: 314 FSVDLETTSLNPL----------EADIVGISLSFRDHEACYIPVGHAYDGAPAQLDRTLV 363

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D  V  V  N  ++  + ++  GI +    W  T V +           L 
Sbjct: 364 LEGLRPLLTDPAVRKVGQNLKYDYQVLRRH-GIVMAGV-WCDTMVASYLINPVRSGHGLD 421

Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +     L+      +   GK              +  Y C  A+   AW L   +  R  
Sbjct: 422 SLAVEHLDHRMISYEEVAGKGKDQLNFARVPVEKASTYSCEDADA--AWLLHRLFLPRVA 479

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           EA  E         D E  L  +   +   G ++DL L+ +L   +  +   L+E ++ L
Sbjct: 480 EAGME-----RLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMAL 534

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDLILNR 281
                 +      L   LF    +     ++        ++ +   +         IL  
Sbjct: 535 APEPF-NLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAAILRY 593

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +       + L   V    GR+  +      + TGR S      QN+P         
Sbjct: 594 RGLAKLKSTYTDALPRLVHPASGRVHTSYNQTV-TNTGRLSSSEPNLQNIP--------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  G  ++ AD + IE RVLA ++ +     
Sbjct: 644 ---------------VRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCD 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AFA  EDI+  T A+ F    + V+ E R                               
Sbjct: 689 AFARDEDIHTRTAAEVFGLFPEMVTPEMRRQA---------------------------- 720

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                           +A +  +         A +  +     +     + A+H G    
Sbjct: 721 ----------------KAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHPGARAF 764

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                            +                           RRL   D+      +
Sbjct: 765 LDGCVAEAEARGYVTTLM--------------------------GRRLPIPDIASSNGNI 798

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                +               +Q  + DI+   M   T+          +++ VHDE+V 
Sbjct: 799 RAFAQRN---------AVNYPIQGSAADIIKAAMVRVTERMRREGLTSRLIMQVHDELVF 849

Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+    ++  L    M         +PL+A+    + +
Sbjct: 850 EVPEGERTAMERLVQHEMEHAAP--LRVPLRADVNVGRNW 887


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54
           +  ID ET +              QA +   + A ++E                 +  + 
Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVL 371

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
           + L   L +  +  +  N  ++  + K   GI +   R+  T + +           + +
Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +   GK                           +  G Y   D + T
Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L  +L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+
Sbjct: 475 LRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           ++ ++L  G   +      L+  LF    +            T +S+L           +
Sbjct: 535 QEAIQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S      ++ L + ++    R+  +     A  TGR S      QN+P     
Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G  ++ AD + IE R++A ++ +D
Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AFANG DI+  T ++ F T +D VSKEQR   K +                    G
Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYG 734

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A +  +     +     +  ++  
Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           VL+  +   +    +                            +     RRL   ++   
Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629
            + +        R    G       +Q  + DI+ + M                +++ VH
Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVH 849

Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E           +   LM +       +PL         +
Sbjct: 850 DELVFEVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 193/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S               A +   ++A +                         
Sbjct: 352 FAFDTETDSLDN----------HAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE    V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKARKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +  AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKERGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M    K          +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDKWLQDEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E        V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 98/706 (13%), Positives = 197/706 (27%), Gaps = 169/706 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
            +   D ET S         +  A    I   + A+D +                     
Sbjct: 346 KRFAFDTETTSLD-------YRIA---QIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNRE 395

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            + + +   L DE+V  + H+  ++  + +   GI +    +  T + +           
Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLAGW-YFDTMLASYVLYSVATRHG 453

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L+      +   G+                   +  +    +    Y   D 
Sbjct: 454 MDDVARLYLSHLTTTYEQVAGRGAKQ---------------KTFNQIPLETAAHYAAEDA 498

Query: 168 EATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQE 216
             T  L++ L        +L             +   + + G  +DL  + +L    +  
Sbjct: 499 HVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNT 558

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
            + L+  I+++  G   +      +   LF   G+     +      T +S+L       
Sbjct: 559 MQNLENQIMEIA-GESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKIEHP- 616

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               LIL     S       + L +  + D     T      + TGR S      QN+P 
Sbjct: 617 -IAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIP- 674

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+ L+ AD + IE R++A +
Sbjct: 675 -----------------------IRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHL 711

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  + AF +G+D++  T A+    P+++V+ +QR   K +                 
Sbjct: 712 SQDEALLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNF--------------G 757

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +        +   K +  
Sbjct: 758 LLYGMSEF------------------------------GLIRQLGFTRQESQDYIKQYFH 787

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ G+    +   +                                 +     RRL   D
Sbjct: 788 RYPGIYDYMQRTRQVALEQG--------------------------FVETLLGRRLYTPD 821

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628
           +      +        R             Q  + DI+   M    K        ++L V
Sbjct: 822 IDARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQV 872

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +     +   L  +M         +PL  E  + K +
Sbjct: 873 HDELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/704 (14%), Positives = 202/704 (28%), Gaps = 168/704 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPS 55
             ID ET S   +           A I   + A ++        T            + +
Sbjct: 321 FCIDTETTSLDVMM----------AEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLT 370

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L + T+  +  N  ++  + +   GI +    +  T + +           + + 
Sbjct: 371 ALNPILENPTIKKIGQNLKYDYSVLRNH-GITLKGI-YYDTMLESYVLNSGSGRHDMDSL 428

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                           +  G Y   D + T 
Sbjct: 429 ALKYLGHKTISYEEIAGKGAKQL---------------RFDQIPVEKAGAYAAEDADITL 473

Query: 172 ELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           +L  +L PL            E  L  +   +   G  ID   + +  E + +  + L+E
Sbjct: 474 QLHHKLYPLIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEE 533

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLI 278
           + + L      +      L+  LF    + +          T +++L           +I
Sbjct: 534 EALHLAGKPF-NLNSPKQLQEILFDSHKLPIIAKTPTGQPSTAEAVLQELAYDYRLAAVI 592

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L   + +      ++ L + ++    R+  +      + TGR S      QN+P      
Sbjct: 593 LEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAV-TATGRLSSSEPNLQNIP------ 645

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  IA     ++ AD + IE R++A ++ ++ 
Sbjct: 646 ------------------IRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDEN 687

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            +KAFANG D++  T ++ F  P+++++ EQR   K +                    G+
Sbjct: 688 LLKAFANGWDVHAATASEIFQIPLEEINNEQRRRAKAINF--------------GLIYGM 733

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                ++ +                               +     +     +  ++  V
Sbjct: 734 SSFGLAKQI------------------------------GVERQDAQYYIDTYFQRYPKV 763

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           L+      +                                 +     RRL   ++    
Sbjct: 764 LEYMNRTRQQAHHQGY--------------------------VETLFGRRLYLPEIN--- 794

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHD 630
                    LMR++          +Q  + DI+   M           K    +++ VHD
Sbjct: 795 ------ARNLMRQKAAERTAINAPMQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHD 848

Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E       S    +  LM    +    +PL         +
Sbjct: 849 ELVFEVNKNAIESSKEMIRELMEHTVT--LSVPLVVSIGTGANW 890


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 97/702 (13%), Positives = 196/702 (27%), Gaps = 159/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S             ++A +   ++A +                        +
Sbjct: 356 FAFDTETDSLD----------TQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQLSLDEV 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108
            + +   L +E +  +  N  ++  +      I++    +  T + +             
Sbjct: 406 IAVMKPILENEKIGKIGQNLKYDAEVLLNY-DIELKGIAF-DTMLESYVLNSVAGMGRHD 463

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN      +   GK                      +    +    Y   D 
Sbjct: 464 MDSLADRHLNHKTVSFEEIAGKGKKQL---------------TFNQIPLEQAANYAAEDA 508

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + L P  + E             L  +   +  +G  ID  ++    ++I   
Sbjct: 509 DVTLLLHQALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITAR 568

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272
             +L++    L      +      L+  LF    +         +  T + +L    +  
Sbjct: 569 LAELEKQAFDLAGEEF-NLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNH 627

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               L+L   + +       + L   ++   +   T      + TGR S      QN+P 
Sbjct: 628 ALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A +G K++ AD + IE R++A +
Sbjct: 687 -----------------------VRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHL 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   + AFA G+DI+  T A+ F  P+++V+ +QR   K +   L Y           
Sbjct: 724 SQDKGLLTAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMS-----AFG 778

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          FE +     +    + Q  E    + L G    L       
Sbjct: 779 LARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLA------ 832

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +        +                 A++ +  M      +    PS        
Sbjct: 833 ---DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDNWLETEKPS-------- 879

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                              D               +++ VHDE+
Sbjct: 880 ----------------------------------AD---------------MLMQVHDEL 890

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E  ++    V   +  LM ++ +    +PLK E      +
Sbjct: 891 VFEVKESELEKVQAKVQELMEQSMT--LDVPLKVEVGVGSNW 930


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/708 (15%), Positives = 198/708 (27%), Gaps = 171/708 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
             D ET S              QA +   ++A   E                      + 
Sbjct: 323 SFDTETTSLN----------VMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVL 372

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             L     D   + + H+  ++  +     GI +    +  T + +          SL +
Sbjct: 373 QQLKPLFEDPKQIKIGHHLKYDMNILA-HYGIQLRGIDF-DTMLESYLLDSASNQHSLDS 430

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           A    L+      +   GK                   +  +    Q  G Y   D    
Sbjct: 431 AALKHLDHKTIRFEEIAGKGAKQ---------------KTFNQINLQDAGPYAAEDAAIA 475

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  D            E  L  +   +   G  ID  L+ K    IA+    
Sbjct: 476 LRLHETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLT 535

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L++   +L      +      L+  LF   G+ +          T +++L    +T    
Sbjct: 536 LEQQAFQLAGKPF-NLGSPKQLQTILFDDHGLPILEKTPKGQASTSENVLQALALTFPLP 594

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL     S       + L E ++   GR+  +     A  TGR S      QN+P   
Sbjct: 595 KIILKHRRLSKLKSTYTDKLPEQINPKTGRVHTSYHQA-AVVTGRLSSSDPNLQNIP--- 650

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  ++ AD + IE R++A  + 
Sbjct: 651 ---------------------ARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQ 689

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G DI+  T A+  N P+++V+ EQR                         
Sbjct: 690 DKGLLKAFAQGLDIHQATAAEVLNIPLERVTHEQRRSA--------------KAINFGLM 735

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +   + +  ++
Sbjct: 736 YGMS------------------------------AFGLARQLGISREDAKNYIERYFDRY 765

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV +  + + +                                       RRL  + + 
Sbjct: 766 PGVKRYMERIRQRAHEQRYVTTLF--------------------------GRRLNLAFIN 799

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628
            + S    A+    R             Q  + DI+ + M          K    +++ V
Sbjct: 800 SNDSLQRRAS---ERAAINAPL------QGSAADIIKKAMIRIDAELIKKKLDAHMIMQV 850

Query: 629 HDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE+V E  +        L   LM    +    +PL  +      + K
Sbjct: 851 HDELVFEIAEHDLQRAKRLIENLMVHTTT--LSVPLVVDIQIGSNWNK 896


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/711 (16%), Positives = 206/711 (28%), Gaps = 165/711 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            +  D ET S            A QA +   + +           T +            
Sbjct: 412 YVAFDTETTSLD----------AMQAELVGISLSCKPGKACYIPLTHKDGEGDLLGGGGL 461

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D  ++ +A N  ++ ++  +  G+D+    +  T +L+ T 
Sbjct: 462 LPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMTRH-GVDVDP--YDDTMLLSYTV 518

Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L       K   G  K++I         +  Y    A+  ++ W
Sbjct: 519 DAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVAIDKATAYAAEDADVTLRLW 578

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                    D  AT  +++ L      ER +  +   +  RG  +D  ++ +L    AQ 
Sbjct: 579 LTLKPRLASDHMAT--VYETL------ERPMVPVLARMEKRGISVDRQMLSRLSGDFAQG 630

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271
              L+ +I +L  G   +      L   LF   G+     ++     T   +L       
Sbjct: 631 AAALESEIYELA-GETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDLAAEG 689

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 I+     S       + L   ++ + +   T     A+ TGR S      QN+P
Sbjct: 690 HPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLSSSEPNLQNIP 749

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                       A   +R   IA  G+KL+ AD + IE RVLA 
Sbjct: 750 ------------------------VRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAH 785

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A      KAF +G DI+  T ++ F TPI+ +    R   K +                
Sbjct: 786 MADIPQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAIN--------------F 831

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +         K + 
Sbjct: 832 GIIYGIS------------------------------AFGLANQLGISRGEAGDYIKTYF 861

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+    + + +                                       R+  Y 
Sbjct: 862 QRFPGIKDYMEAVKKQVHADGYVTTIF--------------------------GRKAHYP 895

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625
           +V      +            Y        +Q  + DIL   M          K    ++
Sbjct: 896 EVNTKNPNMR---------AFYERAAINAPIQGSAADILRRAMVRMEDRLTASKLDAQML 946

Query: 626 LTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           L VHDE++ E P+     ++  +  +M     P+    +PL+ +   A  +
Sbjct: 947 LQVHDELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDARAADNW 997


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+ V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +                  
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                           RRL   D+
Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           K   +       +               +Q  + DI+   M               +++ 
Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 880 VHDELVFEVHKGDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/708 (15%), Positives = 201/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+T   V  N  ++  +  +   I++   +   T + +           + 
Sbjct: 404 LAQLKPILEDDTQAKVGQNLKYDASVLARY-NIEMKGIK-HDTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDQASPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   +            E  L  +   I   G  ID   +    + IAQ   
Sbjct: 507 TLRLHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLD 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+   T ID+VS EQR   K +                  
Sbjct: 721 GDKALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNTYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 797 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           K              R            +Q  + DI+ + M    +           +++
Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 881

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 882 QVHDELVFEVQESALTEIESKVQQLMESAA--ALDVPLVAEAGHGDNW 927


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 201/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP---- 54
           + ID ET S   +          +A +   ++A +                   +     
Sbjct: 341 IAIDTETTSLNYM----------EAKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALV 390

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE +  V  N  ++  +F   +GI +   ++  T + +          ++ 
Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFAN-IGITLRGVQF-DTMLESYVFNSVASKHNMD 448

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                    +    +    Y   D + 
Sbjct: 449 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQIPLETAAPYAAEDADI 493

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    +            E  L      I  +G  ID  L+ +  E +A++  
Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKID 553

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    ++      +      L+   F   G          +  T + +L    +    
Sbjct: 554 ELEHKAHEIAGEPF-NLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 613 PKIILEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 669

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  GKK++ AD + IE R++A ++
Sbjct: 670 ----------------------IRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLS 707

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F+    +V+ +QR   K +   L Y            
Sbjct: 708 QDTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMS-----AFGL 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +     +    +    +      L G    L        
Sbjct: 763 AKQLDIPRAEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYL-------- 814

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                 I  P          
Sbjct: 815 -PAIKDRNAMRRQAAERAA---------------------------INAPM--------- 837

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                   TA   + +      +  E   Q    +I+             +++ VHDE+V
Sbjct: 838 ------QGTAADIIKKAMINIAQWIETETQG---EII-------------MIMQVHDELV 875

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +    S+   +C LM         + L AE      +
Sbjct: 876 FEVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 201/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 34  KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 83

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +     +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 84  TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 141

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 142 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 186

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 187 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 246

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 247 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 305

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 306 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 363

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 364 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 400

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 401 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 446

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 447 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 476

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 477 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 510

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 511 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 561

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    K +
Sbjct: 562 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 606


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 99/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L           A +   + A                          +
Sbjct: 352 FSFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPMQLDRDKV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+V  +  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 402 LAVLKPLLEDESVAKIGQNLKFDKGVMARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 459

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 460 SLSDRYLQHKTITFEEIAGKGKNQL---------------TFNQIPLEQAAVYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    + +             L  +   +   G  ID  ++ +  + + Q   
Sbjct: 505 TLRLHETLWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDTTILGEHSQELTQRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    +L  G   +      L   L+    +         +  T + +L+   +    
Sbjct: 565 ELEVQAHELA-GEAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++    R+  +      + TGR S      QN+P  
Sbjct: 624 PKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 681 ----------------------VRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AF+NG DI+  T A+ F  P+D+V+ EQR   K +                  
Sbjct: 719 RDAGLLRAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLAIPRNEAQKYMNLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +  +   +  A                              +     RRL   D+
Sbjct: 795 YPGVQEYMERTRQQAADQGY--------------------------VSTLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
               +          R            +Q  + DI+ + M          K    +++ 
Sbjct: 829 HSRNAMSR---KAAERAAINAP------MQGTAADIIKKAMIAIDGWLQQEKPLVTMLMQ 879

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E   +        + +LM         +PL+ +      +
Sbjct: 880 VHDELVFEVHHSVLDEASAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 924


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/717 (14%), Positives = 200/717 (27%), Gaps = 178/717 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51
                D ET              A+QA +   ++A           T           + 
Sbjct: 352 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 401

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104
            +   L   L D   + V  ++ F+  +            GI +    +  T + +    
Sbjct: 402 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAF-DTMLESYVLN 460

Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  + +     LN +    +   GK                         A +  G
Sbjct: 461 STATRHDMDSLAQKYLNHTTVSFQDIAGKGAKQL---------------TFDQIALEQAG 505

Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L               D E  L  +   I  +G  +D DL+   
Sbjct: 506 PYAAEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQ 565

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSIL 265
              +  +   L+ +  ++      +      L + L+   G+ ++  +      T + +L
Sbjct: 566 SIELGNKMVALEREAFEIAGEEF-NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVL 624

Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +           +++   + S       + L E ++   GR+  +     AS TGR S  
Sbjct: 625 AKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAS-TGRLSSS 683

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A  G KL+ AD + 
Sbjct: 684 DPNLQNIP------------------------VRTAEGRRIRQAFVAPKGYKLLAADYSQ 719

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ ++  + AF N  D++  T A+ F   +++V+ +QR   K +        
Sbjct: 720 IELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF------ 773

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 +      +     
Sbjct: 774 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 795

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + A++ GV +         A                              +   
Sbjct: 796 KAYIDTYFARYPGVREYMDRTRAQAADQG--------------------------FVETI 829

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RRL   D+    S      +   R            +Q  + DI+ + M         
Sbjct: 830 FGRRLYLPDI---NSNKPQERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCA 880

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E  +     V   +   M++       +PL  E      +
Sbjct: 881 SGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 935


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/711 (15%), Positives = 210/711 (29%), Gaps = 178/711 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   L           A +   + A                          +
Sbjct: 353 FAFDTETDSLDVL----------SANLVGISCADKPGQACYIPLAHDYLDAPHQLDRQYV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE +  +  N  ++  +  +  GI +    +  T + +           + 
Sbjct: 403 LARLQPLLEDEGIAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMD 460

Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +    +   EY   D + 
Sbjct: 461 SLSARHLDHKTITFEEIAGKGKGQL---------------TFNQIPLEQASEYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P+ +GE             L  +   +   G  ID  ++ +  + +A   +
Sbjct: 506 TLQLHQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLE 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSIL-SHSNITQL 273
            L++           +   T  L+  LF    + ++  +      T + +L   +     
Sbjct: 566 ALEQQAHSEAGEPF-NLSSTKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYA 624

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L   V+   GR+  +      + TGR S      QN+P 
Sbjct: 625 LPQVILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 682

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + IE R++A +
Sbjct: 683 -----------------------VRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHL 719

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   ++AFA G+DI+  T A+ F  P++ VS +QR   K +                 
Sbjct: 720 SGDKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAIN--------------FG 765

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 766 LIYGMS------------------------------AFGLARQLNIGRGEAQRYMDLYFE 795

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +   +  +                              +     RRL    
Sbjct: 796 RYPGVLAYMERTRQLASDQGY--------------------------VETLDGRRLYLP- 828

Query: 573 VKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625
              + +  N    +   R            +Q  + DI+   M          +    ++
Sbjct: 829 ---EINARNGMRRKAAERAAINAP------MQGTAADIIKRAMIAVDGWLQETQLEVRMI 879

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSL---MTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E P++   +V  +C +   M  + S A  +PLK +    + +
Sbjct: 880 MQVHDELVFEVPESQVEAV--VCQVRVLMENSLSLA--VPLKVDIGCGENW 926


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 196/701 (27%), Gaps = 156/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP--- 54
              +D+ET S  PL          +A I   + ++ D                  +P   
Sbjct: 314 TFAVDLETTSLNPL----------EAEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363

Query: 55  --SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
               L   L D  +  V  N  ++  +F++  GI++    W  T V +           L
Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH-GIEL-GGVWCDTMVASYLLNPVRSGHGL 421

Query: 110 KNAC-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +     L+      +   GK    +         +  Y C  ++   AW L   +  R 
Sbjct: 422 DSLAVEHLDHKMISYEEVAGKGKEQVNFAQVPVEKASTYSCEDSDA--AWLLHRLFLPRV 479

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                 ++       D E  L  +   +   G ++DL L+ +L     ++  +L+  I  
Sbjct: 480 -----AVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELEGRITG 534

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMS------EGTLKSILSHSNITQLAKDLILN 280
           L      +      L   LF    +     +         ++ +   +        LIL 
Sbjct: 535 LAPEPF-NLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIAALILQ 593

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       + L + V    GR+  +      + TGR S      QN+P        
Sbjct: 594 YRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTV-TNTGRLSSSEPNLQNIP-------- 644

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  L+ AD + IE RVLA  + +    
Sbjct: 645 ----------------VRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFC 688

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AFA  EDI+  T A+ F    + V+ E R                              
Sbjct: 689 DAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQA--------------------------- 721

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            +A +  +         A +  +           + A+H G   
Sbjct: 722 -----------------KAINFGVIYGQGAFSLAKQLGIATKVAREFIDNYFARHPGARA 764

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                             +                           RRL   D+K     
Sbjct: 765 FLDGCVREAEEKGHVTTLL--------------------------GRRLPIPDIKSANGN 798

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
           +     +               +Q  + DI+ E M   T        G  +++ VHDE+V
Sbjct: 799 IRAFAQRN---------AVNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQVHDELV 849

Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            E P     ++  L    M    S    +PLK +      +
Sbjct: 850 FEVPKGEVVAMEQLVRREMEHAVS--LRVPLKVDINHGGNW 888


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 195/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +             +   ++A +                        +
Sbjct: 354 FAFDTETDSLDTISTT----------LVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D +V+ +  N  F++ +  +  GI +    +  T + +           + 
Sbjct: 404 LALLKPVLEDASVLKIGQNLKFDKGVMARY-GITLRGIAF-DTMLESYVLDSVAGRHDMD 461

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +    +    Y   D + 
Sbjct: 462 SLSERYLNHKTITFEEIAGKGKNQL---------------TFNQIPLEQAAVYAAEDADV 506

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    + E             L  +   +  +G  ID  ++ +  + + Q   
Sbjct: 507 TLRLHQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLA 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    +L  G + +   T  L+  L+    +         +  T + +L+   +    
Sbjct: 567 ELEVRAHELA-GEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPSTNEEVLAELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++    R+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAF++G DI+  T A+ F  PIDKV+ EQR   K +   L Y            
Sbjct: 721 CDAGLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +   + +    + Q  E      L G    L        
Sbjct: 776 SRQLGIGRNEAQKYMNLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                   + + +       +    P          
Sbjct: 828 -PDIHSRNAISRKAAERAAINAPMQGTAADI-IKKAMASIDAWLLSQEEP---------- 875

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                        VHDE+V
Sbjct: 876 -----------------------LINMIMQ------------------------VHDELV 888

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  ++        + +LM         +PL+ +    K +
Sbjct: 889 FEVHESVLEGAKAKIKALMESCMQ--LNVPLQVDVGSGKNW 927


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/720 (14%), Positives = 200/720 (27%), Gaps = 181/720 (25%)

Query: 1   MSKL------FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---- 50
           M ++       ID ET S  P+          QA +   + + +           +    
Sbjct: 349 MRRIEAAPLVAIDTETTSLDPM----------QAQLVGISLSVEPGVACYIPVAHRGPDV 398

Query: 51  -----------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                        +   +  +L D +   +  N  ++  +F    G+ +       T + 
Sbjct: 399 AGLPDHGQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANH-GVKLRGVA-HDTMLQ 456

Query: 100 ARTNGLP--SSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +          + +    L +      +   GK                           
Sbjct: 457 SYVLASHRNHGMDSLAERLLSLKTITYEEVCGKGASQIG---------------FDQIDL 501

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDL 205
               EY   D + T  L +++ P  +            E  + ++ Q +   G  ID + 
Sbjct: 502 ARATEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAER 561

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTL 261
           +      + Q    L++   +       +      +   LF    + +V  +      T 
Sbjct: 562 LAAQSAELGQRMLALEQAAYEAAGQPF-NLGSPKQIGEILFSQMKLPVVKKTASGAPSTD 620

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
           + +L           L+L+    +       + L + V+   GR+  +     A  TGR 
Sbjct: 621 EEVLQKLAEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATA-VTGRL 679

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P                                +R   IA  G  +V AD
Sbjct: 680 ASTEPNLQNIP------------------------VRTEEGRRIREAFIAEPGSVIVSAD 715

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A I+G++  ++AFANGEDI+  T  + F    + VS EQ            
Sbjct: 716 YSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQ------------ 763

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                                             + +  +  L         A    +  
Sbjct: 764 --------------------------------RRYAKVINFGLIYGMSAFGLAGNLGIER 791

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
            A +     +  ++ GV    ++  +                                  
Sbjct: 792 EAAKHYIDRYFMRYPGVAHYMEETRQTAREQGYVETVF---------------------- 829

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617
                RRL   D+ G       A     R            +Q  + D++   M      
Sbjct: 830 ----GRRLWLPDINGGSGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQGW 876

Query: 618 -TKNGY--DIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++G     ++ VHDE+V E P+     V   L  LM         +PL AE      +
Sbjct: 877 LERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPELMCSVAQ--LRVPLVAEVGSGANW 934


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +           A +   ++A ++                       +
Sbjct: 360 VAFDTETDSLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWV 409

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  F+  +  +   I++   ++  T + +           + 
Sbjct: 410 LAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHDMD 467

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +     + G Y   D + 
Sbjct: 468 SLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLDVAGPYAAEDADI 512

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L    +            E  L  +   I   G  ID  L+      IA    
Sbjct: 513 TLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLD 572

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    ++ +    +      L+  LF   G+ +       +  T + +L    +    
Sbjct: 573 ELETKAYEIAEQEF-NLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPL 631

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L + V+   GR+  +      + TGR S      QN+P  
Sbjct: 632 PKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 688

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G K++  D + IE R++A ++
Sbjct: 689 ----------------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLS 726

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+    PI+ V+ EQR   K +                  
Sbjct: 727 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 772

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 773 IYGMS------------------------------AFGLAKQLDMGRNEAQDYMNVYFER 802

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +      +                              +     RRL   D+
Sbjct: 803 YPGVLEYMESTRIHASEQGY--------------------------VETLFGRRLYLPDI 836

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           K              R            +Q  + DI+   M    +           +++
Sbjct: 837 KSRN---GIRRKAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 887

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++   +V   +  LM         +PL A+      +
Sbjct: 888 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADTGSGDNW 933


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 200/717 (27%), Gaps = 178/717 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51
                D ET              A+QA +   ++A           T           + 
Sbjct: 348 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 397

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104
            +   L   L D   + V  ++ F+  +            GI +    +  T + +    
Sbjct: 398 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAF-DTMLESYVLN 456

Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  + +     L+ +    +   GK                         A +  G
Sbjct: 457 STATRHDMDSLAQKYLDHTTVSFQDIAGKGAKQL---------------TFDQIALEQAG 501

Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L               D E  L  +   I  +G  +D +L+   
Sbjct: 502 PYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQ 561

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSIL 265
              +  +   L+ +  ++      +      L + L+   G+ ++  +      T + +L
Sbjct: 562 SIELGNKMIALEREAFEIAGEEF-NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVL 620

Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +           +++   + S       + L E ++   GR+  +     AS TGR S  
Sbjct: 621 AKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAS-TGRLSSS 679

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A  G KL+ AD + 
Sbjct: 680 DPNLQNIP------------------------VRTAEGRRIRQAFVAPKGYKLLAADYSQ 715

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ ++  + AF N  D++  T A+ F   +++V+ +QR   K +        
Sbjct: 716 IELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF------ 769

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 +      +     
Sbjct: 770 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 791

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + A++ GV +         A                              +   
Sbjct: 792 KAYIDTYFARYPGVREYMDRTRAQAADQG--------------------------FVETI 825

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RRL   D+    S      +   R            +Q  + DI+ + M         
Sbjct: 826 FGRRLYLPDI---NSNKPQERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCA 876

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E  +     V   +   M++       +PL  E      +
Sbjct: 877 SGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 931


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 101/692 (14%), Positives = 195/692 (28%), Gaps = 141/692 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D+ET S   +          +A I   ++A   +                      +
Sbjct: 325 FAFDLETNSLDYI----------EAEIVGLSFAIKPKEAAYVPLAHDYDAAPLQLAREGV 374

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L+D     V  N  F+R +     GI++   R   + + +          ++ 
Sbjct: 375 LARLQPLLQDSNRGKVGQNLKFDRNVLANY-GIELEGIR-HDSMLESYVLHSTASRHNMD 432

Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +     L  S    +   GK              +  Y    A+       +     +  
Sbjct: 433 SLALKYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQLHHYFWPRLQQE 492

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           EA   L++ L      E  L  +   +   G +ID   +      +    +K++++  +L
Sbjct: 493 EALCRLYQEL------EIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQEAFEL 546

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                 +      ++  L+    + +          T +++L    +      L+L   A
Sbjct: 547 AGEPF-NLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLLLEYRA 605

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            S       + L   V+   GR+  +      + TGR S      QN+P           
Sbjct: 606 LSKLKSTYTDRLPLQVNPRTGRVHTSYHQAV-TATGRLSSSDPNLQNIP----------- 653

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   IA  G  L+ AD + IE R++A ++ ++  + AF
Sbjct: 654 -------------IRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAF 700

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GEDI+  T A+ F TP++ V+ EQR   K +   L Y   A           L + + 
Sbjct: 701 EAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAH-----GLAQQLGISRS 755

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           +        F  +   +++   +  Q  +    + L G    L           +     
Sbjct: 756 AAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYL---------PEIHSRQA 806

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                   +                                                   
Sbjct: 807 QRRNQAERMAINAPMQGTAADII------------------------------------- 829

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
               ++R   +  K      Q                    +++ VHDE+V E  +    
Sbjct: 830 -KRAMLRADQWLQK------QGS---------------NARMIMQVHDELVFEVAEAELD 867

Query: 643 -SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +   +   M         +PL  E      +
Sbjct: 868 TTTAAIRENMAGAAQ--IKVPLIVEMGSGANW 897


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 99/707 (14%), Positives = 189/707 (26%), Gaps = 170/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
             +D ET S   +          QA +   + A +                        +
Sbjct: 344 FALDTETTSLNYM----------QAELVGVSVAVEAGKAAYIPFGHNYPGAPDQLDKQFV 393

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+ +  V  N  ++  +  + +GI +    +  T + +           + 
Sbjct: 394 LDALKPILEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAY-DTMLESYVLDSVATRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +         Y   D + 
Sbjct: 453 SLALKYLGRKTISFEEIAGKGAKQL---------------TFNQVGLHEASRYAAEDADV 497

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I   G  +D  L+    + +A+   
Sbjct: 498 TLRLHQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMA 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L E   ++      +      L   L+    I         +  T +++L    +    
Sbjct: 558 ELQEKACEIAGQEF-NLSSPKQLGEILYQKLEIPVIKKTPKGAPSTAEAVLQELALEYPL 616

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I++    +       + L E ++   GR+  +     A  TGR S      QN+P  
Sbjct: 617 PQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 673

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G+K+V  D + IE R++A ++
Sbjct: 674 ----------------------VRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLS 711

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +     AF  G DI+  T A+ +   +D+VS   R   K +                  
Sbjct: 712 DDKGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------GL 757

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  L     +     +  +
Sbjct: 758 IYGMS------------------------------AFGLAKQLGLPRKEAQEYIDLYFER 787

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +   D     A                                    RRL   ++
Sbjct: 788 YPGVKKYMADTRALAADNGYVETVY--------------------------GRRLYLPEI 821

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                    A     R            +Q  + DI+ + M               +++ 
Sbjct: 822 HSKNGQRRQAA---ERAAINAP------MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQ 872

Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  +      V  + + M         +PL  +    + +
Sbjct: 873 VHDELVFEVAEDQVDDLVREVKARMESAAE--LKVPLIVDAGIGENW 917


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 200/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLERDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDEASPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   D            E  L  +   I   G  ID   +    + IAQ   
Sbjct: 507 TLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLD 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQQAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+   T ID+VS EQR   K +                  
Sbjct: 721 GDKALLEAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                                    RRL   ++
Sbjct: 797 YPGVMQYMEDTRSTASEQGYVETIY--------------------------GRRLHLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M    +           +++
Sbjct: 831 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQTEGDGRVKLLM 881

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 882 QVHDELVFEVQESALTEIESKVQELMESAAE--LDVPLVAEAGHGDNW 927


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 200/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +          +A +   ++A ++                       +
Sbjct: 350 IAFDTETDSLDYM----------EANLVGVSFAIEEGVAAYVPVAHDYMDAPKQLERDWV 399

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D +   V  N  ++  +  +  GID+   ++  T + +           + 
Sbjct: 400 LEQLKPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIKF-DTMLASYVYNSVAGKHDMD 457

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 458 SLALRFLQHSCISFEQVAGKGKKQL---------------TFNQIDLEQAAPYAAEDADV 502

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +RL    D            E  L  +   I   G  ID   +    + IA    
Sbjct: 503 TFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRLD 562

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
            L++    +      +      L+  LF   G+         +  T + +L    +    
Sbjct: 563 ALEQQAFDIAGQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 621

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            + IL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 622 PEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 678

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 679 ----------------------IRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHLS 716

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+     I +V+ EQR   K +                  
Sbjct: 717 GDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNF--------------GL 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 763 IYGMS------------------------------AFGLAKQLGIPRGEAQQYMDTYFER 792

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 793 YPGVMQYMEDTRSIAAEQGYVETIF--------------------------GRRLHLPEI 826

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M                +++
Sbjct: 827 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDDWIQTEGQGRVKLLM 877

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +T    +   + +LM +       +PL AE    + +
Sbjct: 878 QVHDELVFEVEETSLPEIESKIRNLMEQAAQ--LKVPLVAEAGHGENW 923


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF    +         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMDLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+ E                                 +     RRL   D
Sbjct: 797 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPDIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   M         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 356 FAFDTETDSLDYMV----------ANLVGLSFATDEGVAAYVPVAHDYLDAPQQLDRDWV 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 406 LEQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 463

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 464 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 508

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 509 TLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLD 568

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 569 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 627

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LI+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 628 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 684

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 685 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 722

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+     I+ V+ EQR   K +                  
Sbjct: 723 GDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GL 768

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 769 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 798

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 799 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 832

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M    +           +++
Sbjct: 833 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 883

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 884 QVHDELVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/704 (15%), Positives = 202/704 (28%), Gaps = 159/704 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET S   L             +   ++A                         
Sbjct: 353 KIFAFDTETDSLDVLTTN----------LVGLSFATAPSVAAYIPVGHDYLDAPDQLDRD 402

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            + + L   L D  ++ V  N  +++ +  +  GI++    +  T + +           
Sbjct: 403 DVLAKLKPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIAF-DTMLESYDLDSVAGRHD 460

Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN      +   GK                      +  A +    Y   D 
Sbjct: 461 MDSLAERHLNHKTITFEEIAGKGKSQL---------------TFNQIALEQATPYAAEDA 505

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L P  + E             L  +   +   G  ID +++ K  + +A  
Sbjct: 506 DVTLQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIR 565

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271
             +L++   +       +      L+  LF    + +V  +      T + +L+  +   
Sbjct: 566 LDELEKKAHEAAGEPF-NLSSPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQG 624

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                +IL     +       + L + ++   GR+  +      + TGR S      QN+
Sbjct: 625 FELPTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAV-TATGRLSSSDPNLQNI 683

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G K+V AD + IE R++A
Sbjct: 684 P------------------------VRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMA 719

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+   + AFA G+DI+  T A+ F   ++ V+ EQR   K +   L Y         
Sbjct: 720 HLSGDKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMS-----A 774

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L++ +          FE +     +    + Q  E    + L G    L     
Sbjct: 775 FGLARQLNIARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYL----- 829

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +        +G                  + R ++      +    P  R    
Sbjct: 830 ----PEIHSRNGMRRKGAERAAINAPMQGTAADI-IKRAMISVDAWLLQQKEPLVR---- 880

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                                      M           + VHD
Sbjct: 881 -------------------------------------------MI----------MQVHD 887

Query: 631 EIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E  ++     V  +  LM ++   A  +PLK +    + +
Sbjct: 888 ELVFEVHESVIEQTVEKVRELMEQSLELA--VPLKVDVGTGENW 929


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54
           +  ID ET +              QA +   + A ++E                 +  + 
Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVL 371

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
           + L   L +  +  +  N  ++  + K   GI +   R+  T + +           + +
Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +   GK                           +  G Y   D + T
Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L  +L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+
Sbjct: 475 LRLHHKLYPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLE 534

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           ++ V+L  G   +      L+  LF    +            T +S+L           +
Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S      ++ L + ++    R+  +     A  TGR S      QN+P     
Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G  ++ AD + IE R++A ++ +D
Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AFANG DI+  T ++ F T ++ VSKEQR   K +                    G
Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYG 734

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A +  +     +     +  ++  
Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           VL+  +   +    +                            +     RRL   ++   
Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629
            + +        R    G       +Q  + DI+ + M                +++ VH
Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVH 849

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E            +  LM +       +PL         +
Sbjct: 850 DELVFEVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGIGSNW 892


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 187/700 (26%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A +   ++A +                          
Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +       T + +           +  
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLQGV-VFDTMLESYVFNSVASRHDMDG 453

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 454 LALKYLGHKNIAFEDIAGKGAKQL---------------TFNQIQLETAAPYAAEDADIT 498

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++  +
Sbjct: 499 LRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDE 558

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L+     +      +      L++  F   G          +  T + +L    +     
Sbjct: 559 LETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLP 617

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 618 KVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 673

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G+K++ AD + IE R++A ++ 
Sbjct: 674 ---------------------IRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQ 712

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y             
Sbjct: 713 DAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGLA 767

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    E      L G    L         
Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYL--------- 818

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                      ++                        
Sbjct: 819 PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS----------------------- 855

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +  ++  T G                   M           + VHDE+V 
Sbjct: 856 ---------IADWIKTDTQGE----------------IAMI----------MQVHDELVF 880

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C LM K  +    + L AE      +
Sbjct: 881 EVDADKAETLKLKVCELMAKAAN--LDVELLAEAGIGDNW 918


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET              A+QA +   ++A +                       A+
Sbjct: 336 FAFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAV 385

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D     V  N+ ++  +    +  I++    +  T + +           +
Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTATRHDM 444

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+ +    +   GK                      +       G Y   D +
Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQINLDKAGPYAAEDAD 489

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L               D E  L  +   I  +G  +D +L+      +  + 
Sbjct: 490 ITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKM 549

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272
            +L+    +L  G   +      L   L+   G+ ++  +      T +++L    +   
Sbjct: 550 AELELRAYELA-GETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGY 608

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G KL+ AD + IE R++A 
Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF N  D++  T A+ F   ++ V+ +QR   K +                
Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINF-------------- 749

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D+      L        R            +Q  + DI+   M               ++
Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVI 864

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +   M++       +PL  E      +
Sbjct: 865 LQVHDELVLEVREDLVQQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 195/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + ID ET S   +           A +   ++A +                         
Sbjct: 368 IAIDTETTSLDYMT----------AKLVGISFAVEVGKAAYLPLAHDYLDAPEQLDFDEA 417

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D  +  V  N  ++  +F   +GI +    +  T + +          ++ 
Sbjct: 418 IAKLKPLLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVAF-DTMLESYVFNSVASKHNMD 475

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 476 DLALKYLGHKNISFEEIAGKGAKQL---------------TFNQIDLETAAPYAAEDADI 520

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    + E             L  +   I  +G  ID  ++ +  + IA    
Sbjct: 521 TLRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISID 580

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           KL++D  ++  G   +      L+   F   G          +  T + +L    +    
Sbjct: 581 KLEQDAFEIA-GETFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 639

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V++  GR+  +     A  TGR S      QN+P  
Sbjct: 640 PKIILQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 696

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  GKK++ AD + IE R++A ++
Sbjct: 697 ----------------------IRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLS 734

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F     +V+ EQR   K +   L Y            
Sbjct: 735 QDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMS-----AFGL 789

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +     +    + +  +      L G    L        
Sbjct: 790 ARQLDIPRGEAQKYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYL-------- 841

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 842 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +  +   T+G                   M           + VHDE+V
Sbjct: 878 ---------NIASWIESETHGE----------------ITMI----------MQVHDELV 902

Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++   +C +M    S    + L AEG     +
Sbjct: 903 FEVDSDKAEALKEQICKMMADAVS--LDVELLAEGGIGDNW 941


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 356 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 406 LEQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 463

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 464 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 508

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 509 TLRLHNRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLD 568

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 569 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 627

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LI+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 628 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 684

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 685 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 722

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+     I+ V+ EQR   K +                  
Sbjct: 723 GDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GL 768

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 769 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 798

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 799 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 832

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M    +           +++
Sbjct: 833 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 883

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 884 QVHDELVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 193/701 (27%), Gaps = 171/701 (24%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSDLLQ 59
           T S   +           A +   ++A +                            L  
Sbjct: 35  TDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA- 115
            L DE  + V  N  ++R +     GI++    +  T + +           + +     
Sbjct: 85  LLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERW 142

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L       +   GK                      +  A +  G Y   D + T +L  
Sbjct: 143 LKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQLHL 187

Query: 176 RLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++ P               E  L  +   I   G +ID  ++    E +     +L++  
Sbjct: 188 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 247

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILN 280
            ++      +   T  L+  LF   GI  +  +      T + +L    +      +IL 
Sbjct: 248 HEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE 306

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       + L   ++   GR+  +      + TGR S      QN+P        
Sbjct: 307 YRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-------- 357

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA     +V AD + IE R++A ++ +   +
Sbjct: 358 ----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 401

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AFA G+DI+  T A+ F  P++ V+ EQR   K +                    G+  
Sbjct: 402 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS- 446

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A +  +     +     +  ++ GVL+
Sbjct: 447 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 477

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +                                     +     RRL   D+K     
Sbjct: 478 YMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIKSSNGA 511

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633
              A  +               +Q  + DI+   M               +++ VHDE+V
Sbjct: 512 RRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 562

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       +V   +  LM         +PL  E    + +
Sbjct: 563 FEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 189/701 (26%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             +D ET S   +           A +   ++A +                         
Sbjct: 345 FAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D  +  V  N  ++  +     GI +    +  T + +           + 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANA-GITLQGVAF-DTMLESYVFNSVASRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +  + +    Y   D + 
Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQL---------------TFNQISLETAAPYAAEDADI 497

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I  +G  ID  L+ +  E +A++  
Sbjct: 498 TLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKID 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+     +      +      L++  F   G          +  T + +L    +    
Sbjct: 558 ELETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPL 616

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 617 PKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                    +    +R   IA  G+K++ AD + IE R++A ++
Sbjct: 674 ----------------------IRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLS 711

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F T  D V+ EQR   K +   L Y            
Sbjct: 712 QDAGLLNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F  +     +    +    +      L G    L        
Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYL-------- 818

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 819 -PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS---------------------- 855

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +  ++  T G                   M           + VHDE+V
Sbjct: 856 ----------IADWIKTDTQGE----------------IAMI----------MQVHDELV 879

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++   +C LM K  +    + L AE      +
Sbjct: 880 FEVDADKAETLKQKVCELMAKAAN--LDVELLAEAGIGDNW 918


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 205/705 (29%), Gaps = 168/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54
           +  ID ET +              QA +   + A ++E                 +  + 
Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVL 371

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
           + L   L +  +  +  N  ++  + K   GI +    +  T + +           + +
Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIGY-DTMLESYVLNSGAGRHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +   GK                              G Y   D + T
Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVVKAGIYAAEDADIT 474

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L  +L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+
Sbjct: 475 LRLHHKLYPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           ++ V+L  G   +      L+  LF    +            T +S+L           +
Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S      ++ L + ++    R+  +     A  TGR S      QN+P     
Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G  ++ AD + IE R++A ++ +D
Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AFANG DI+  T ++ F T +D VSKEQR   K +                    G
Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYG 734

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A +  +     +     +  ++  
Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           VL+  +   +    +                            +     RRL   ++   
Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629
            + +        R    G       +Q  + DI+ + M                +++ VH
Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVH 849

Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E           +   LM +       +PL         +
Sbjct: 850 DELVFEVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/708 (14%), Positives = 196/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA +   ++A  +                       +
Sbjct: 354 FAFDTETTSLNYI----------QAELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  +++ +     GI++    +  T + +           + 
Sbjct: 404 LASLKTLLEDSNAKKVGQNLKYDKSVLANY-GINLAGIAY-DTMIESYVYNSIATRHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 462 SLADKYLGHKTISFEEIAGKGKKQL---------------TFNQIELEQASAYAAEDADV 506

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L P  + E             L  +  ++  +G  ID   +      +     
Sbjct: 507 TLRLHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARML 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    ++ +    +      L+  LF+   +         +  T + +L    +    
Sbjct: 567 ELEAKAHEIAEQPF-NLSSPKQLQEILFVKMELPVIKKTPKGAASTAEDVLQELALNYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + S       + L   +    GR+  +      + TGR S      QN+P  
Sbjct: 626 PKIILEYRSLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I   G K V  D + IE R++A ++
Sbjct: 683 ----------------------VRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ G+DI+  T A+ F+  +D V+ +QR   K +                  
Sbjct: 721 QDKGLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLGRQLNIPQKEAKKYMTRYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL    +  +                                 +   S RRL   ++
Sbjct: 797 YPGVLTYMDETRKVAKDKGY--------------------------VETLSGRRLYLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626
               + ++   +   R            +Q  + DI+ + M N          N   +++
Sbjct: 831 -NARNKMSQMAA--ERAAINAP------MQGTASDIIKKAMINVAGWMETVETNSIRMLM 881

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +    + V  +  LM    S    +PL AE      +
Sbjct: 882 QVHDELVFEIKEEHVEAYVVKIKELMAAAMS--LDVPLLAEAGVGDNW 927


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 199/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                        +
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFATEPGMAAYVPVAHDYLDAPNQISRERV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE    V  N  F+R + +   GI++    +  T + +           + 
Sbjct: 404 LELLKPLLEDEKAKKVGQNLKFDRGILQNY-GIELRGIAY-DTMLESYILNSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTVTFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++ K  E +A    
Sbjct: 507 TLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLS 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQKAHEIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++    R+  +     A  TGR S      QN+P  
Sbjct: 626 PKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVA-ATGRLSSTEPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ +QR   K +                  
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +                                     +     RRL   D+
Sbjct: 797 YPGVLEYMERTRAQAKEKGY--------------------------VETLDGRRLYLPDI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
               +       +               +Q  + DI+   M          K    +++ 
Sbjct: 831 TSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V   +  LM  + +    +PL  E    + +
Sbjct: 882 VHDELVFEVHHEDLEAVSKKIHELMEGSMT--LDVPLLVEVGSGENW 926


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54
           +  ID ET +              QA +   + A +++                 +  + 
Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVL 371

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
           + L   L +  +  +  N  ++  + K   GI +   R+  T + +           + +
Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLQGIRY-DTMLESYVLNSGAGRHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +   GK                           +  G Y   D + T
Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L  +L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+
Sbjct: 475 LRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           ++ V+L  G   +      L+  LF    +            T +S+L           +
Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S      ++ L + ++    R+  +     A  TGR S      QN+P     
Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G  ++ AD + IE R++A ++ +D
Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AFANG DI+  T ++ F T ++ VSKEQR   K +                    G
Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYG 734

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A +  +     +     +  ++  
Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           VL+  +   +    +                            +     RRL   ++   
Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629
            + +        R    G       +Q  + DI+ + M                +++ VH
Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVH 849

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E            +  LM +       +PL         +
Sbjct: 850 DELVFEVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/705 (14%), Positives = 192/705 (27%), Gaps = 163/705 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 357 VCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAAQL 406

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
               + + +  +L DE+   V  +  ++  +F     I +       T + +        
Sbjct: 407 SRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIE-HDTMLESYVLESHRN 464

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                               EY   
Sbjct: 465 HGMDALAERVLHLKTITYEAVCGKGASQIG---------------FDEVPLDRATEYAAE 509

Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  ID D + K    + 
Sbjct: 510 DADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELG 569

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
                L+ +  KL      +      +    F    + ++  +      T + +L     
Sbjct: 570 LRLIDLEAEAHKLAGQPF-NLSSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAE 628

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 629 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA-VTGRLASTDPNLQN 687

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   IA  G  +V AD + IE R++
Sbjct: 688 IP------------------------VRTEEGRRIREAFIAPEGSVIVSADYSQIELRIM 723

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ ++  ++AF  G+D++  T A+ FN    +V+ +QR + KV+   L Y        
Sbjct: 724 AHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMS----- 778

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +  A S+    + +  E    + + G    L    
Sbjct: 779 AFGLASNLGIGRDAAKLYIDRYFARYPGAASYMDETRQRAREQGYVETVFGRRLWL---- 834

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                                           
Sbjct: 835 -----PDINGGNGPRRQAAERAAINAPMQGT----------------------------- 860

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                     KL+   VQ            +A      +V+ VH
Sbjct: 861 ---------------------AADLIKLSMLAVQG---------WLDAEAMRSRLVMQVH 890

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P      V   L  LM    +    +PL AE      +
Sbjct: 891 DELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    Q   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLQQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 796

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 881

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   +         +PL  E    + +
Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 926


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET              A+QA +   ++A +                       A+
Sbjct: 336 FAFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAV 385

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D     V  N+ ++  +    +  I++    +  T + +           +
Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTATRHDM 444

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+ +    +   GK                      +       G Y   D +
Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQINLDKAGPYAAEDAD 489

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L               D E  L  +   I  +G  +D +L+      +  + 
Sbjct: 490 ITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKM 549

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272
            +L+    +L  G   +      L   L+   G+ ++  +      T +++L    +   
Sbjct: 550 AELELRAYELA-GETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGY 608

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G KL+ AD + IE R++A 
Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF N  D++  T A+ F   ++ V+ +QR   K +                
Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINF-------------- 749

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D+      L        R            +Q  + DI+   M               ++
Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVI 864

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +   M++       +PL  E      +
Sbjct: 865 LQVHDELVLEVREDLVQQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/708 (14%), Positives = 193/708 (27%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +   D ET S              +A I   + A +                        
Sbjct: 360 EFSFDTETTSLD----------VMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQLSLEW 409

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + L   L DE  + +  N  ++R +     GI +   ++  T + +          ++
Sbjct: 410 VLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKY-DTMLESYVWNSVASRHNM 467

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L++     +   GK +                    +    +  G Y   D +
Sbjct: 468 DDLAQTYLDYKTVTFEELAGKGVKQL---------------TFNQLKIEDAGHYAAEDAD 512

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L +   P             + E  L  +   I   G  +D  L+ +    + +  
Sbjct: 513 ITLRLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERM 572

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
            +L+    +L      +      L + LF    +         +  T + +L    +   
Sbjct: 573 VQLERKAYELAGQEF-NLSSPKQLGVILFEQLQLPVIKKTPTGTPSTAEEVLQELALDYP 631

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +I+   A +       + L   ++   GR+        A  TGR S      QN+P 
Sbjct: 632 LPKVIMEYRAMAKLKSTYTDKLPLMINPATGRIHTNYHQAVA-ATGRLSSQDPNLQNIP- 689

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G KLV AD + IE R++A +
Sbjct: 690 -----------------------IKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHL 726

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   + AF  G D++  T A+ F   +D V+ E R   K +                 
Sbjct: 727 SSDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINF--------------G 772

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 773 LIYGMS------------------------------AFGLAKQLHVGRNEAQQYIDRYFE 802

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV +   ++                                   +     RRL   D
Sbjct: 803 RYPGVQRYMNNIRAQAHEQGY--------------------------VETLFGRRLYLPD 836

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +               R            +Q  + DI+   M               +++
Sbjct: 837 INAKNKNF---QLAAERTAINAP------MQGTAADIIKTAMIAVDNWLVEAGLDAKLIM 887

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    V T + + M+        +PL  +      +
Sbjct: 888 QVHDELVLEVAESCLDEVCTGVVARMSAAAR--LNVPLIVDAGVGNNW 933


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 190/705 (26%), Gaps = 163/705 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 357 VCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQL 406

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
               + + +  +L DE+   V  +  ++  +F     I +       T + +        
Sbjct: 407 SRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIE-HDTMLESYVLESHRN 464

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                                Y   
Sbjct: 465 HGMDALAERVLHLKTITYEAVCGKGASQIG---------------FDEVPLDRATAYAAE 509

Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  ID D + K    + 
Sbjct: 510 DADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELG 569

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
               +L+ +  KL      +      +    F    + ++  +      T + +L     
Sbjct: 570 LRLIELEAEAHKLAGQPF-NLGSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAE 628

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 629 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA-VTGRLASTDPNLQN 687

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   IA  G  +V AD + IE R++
Sbjct: 688 IP------------------------VRTEEGRRIREAFIAPEGSVIVSADYSQIELRIM 723

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ ++  ++AF  G+D++  T A+ FN    +V+ +QR + KV+   L Y        
Sbjct: 724 AHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMS----- 778

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +  A ++    +    E    + + G    L    
Sbjct: 779 AFGLASNLGIGRDAAKLYIDRYFARYPGAANYMEETRQSAREHGYVETVFGRRLWL---- 834

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                                           
Sbjct: 835 -----PDINGGNGPRRQAAERAAINAPMQGT----------------------------- 860

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                     KL+   VQ             A      +V+ VH
Sbjct: 861 ---------------------AADLIKLSMLAVQG---------WLEAEAMRSRLVMQVH 890

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P      V   L  LM    +    +PL AE      +
Sbjct: 891 DELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 355 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 405 LEQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 462

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 463 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 507

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   +            E  L  +   I   G  +D  L+    + IA    
Sbjct: 508 TLRLHNRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDDMLLGAQSQEIAVRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         S  T + +L    +    
Sbjct: 568 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGSPSTNEEVLQELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LI+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 684 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+     I+ V+ EQR   K +                  
Sbjct: 722 GDKALLEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNF--------------GL 767

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 768 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 797

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 798 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 831

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M    +           +++
Sbjct: 832 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 882

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 883 QVHDELVFEVEESSLAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 928


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 196/709 (27%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDREWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+T   V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 404 LAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQLAGKGKNQL---------------TFNQIDLNEAAVYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   +   G  ID   +    + IA    
Sbjct: 507 TLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLG 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQKAYEIAGQPF-NMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+     I++VS EQR   K +                  
Sbjct: 721 GDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL     
Sbjct: 797 YPGVMQYMEDTRSNAAQHGYVETIF--------------------------GRRLHLP-- 828

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIV 625
             + +  N    +   R            +Q  + DI+ + M                ++
Sbjct: 829 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLL 880

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 881 MQVHDELVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/710 (14%), Positives = 199/710 (28%), Gaps = 171/710 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET S   L           A +   ++A +                       
Sbjct: 356 KCFAFDTETDSLDTL----------SAHLIGLSFAIEKGKGAYLPLGHNYLDAPQQLPLD 405

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----P 106
            + + +   L D+ +  +  N  F+  +      I++ +  +  T + +           
Sbjct: 406 EVLAAIKPILVDKNIQKIGQNLKFDYGVMANY-DIELKNMAF-DTMLESYVLNSVAGLGR 463

Query: 107 SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             + +     LN      +   GK                      +    +    Y   
Sbjct: 464 HDMDSLAQRHLNHKTITFEEIAGKGKNQL---------------TFNQIPLEQASTYAAE 508

Query: 166 DVEATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P  + E             L  +   +   G  ID + + K    IA
Sbjct: 509 DADVTLLLHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIA 568

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270
               +++++   + +    +      L+  LF    +         +  T + +L     
Sbjct: 569 SRLMEIEKEAYAIAEQEF-NLASPKQLQAILFEKLQLPVVKKTPSGAPSTNEEVLEELAF 627

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
           +     +IL   + S       + L   +    +   T      + TGR S      QN+
Sbjct: 628 SHELPKIILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTATGRLSSRDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G K+V AD + IE R++A
Sbjct: 688 P------------------------VRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ +   + AFA G+DI+  T A+ F   +  V+ EQR   K +               
Sbjct: 724 HLSQDKGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINF------------- 770

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   + +  +     +     +
Sbjct: 771 -GLIYGMS------------------------------AFGLSRQLGITRGQAQHYMDRY 799

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             ++ GVL   +   +  A                              +   + RRL  
Sbjct: 800 FERYPGVLSYMERTRKQAAEQGY--------------------------VETLAGRRLYL 833

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624
            D+          +   MR +    +     +Q  + DI+ + M          K    +
Sbjct: 834 PDIN---------SRNAMRRKASEREAINAPMQGTAADIIKKAMIALDKWIESVKPDLYM 884

Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE+V E  ++        +  LM ++      +PLK +      +
Sbjct: 885 LMQVHDELVFEVKESAVDRSQQKIRQLMEQSMQ--LTVPLKVDVGIGDNW 932


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/709 (14%), Positives = 196/709 (27%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 380 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWV 429

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+T   V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 430 LAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 487

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 488 SLALRFLQHSCISFEQLAGKGKNQL---------------TFNQIDLNEAAVYAAEDADV 532

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   +   G  ID   +    + IA    
Sbjct: 533 TLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLG 592

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +      L+  LF   G+         +  T + +L    +    
Sbjct: 593 ELEQKAYEIAGQPF-NMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPL 651

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 652 PSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 708

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 709 ----------------------IRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLS 746

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+     I++VS EQR   K +                  
Sbjct: 747 GDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNF--------------GL 792

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 793 IYGMS------------------------------AFGLAKQLGIPRGEAQTYMDKYFER 822

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                                    RRL     
Sbjct: 823 YPGVMQYMEDTRSNASQHGYVETIF--------------------------GRRLHLP-- 854

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIV 625
             + +  N    +   R            +Q  + DI+ + M                ++
Sbjct: 855 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLL 906

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 907 MQVHDELVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 953


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 201/705 (28%), Gaps = 161/705 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
           S    D ET S             ++A +   ++A +                      +
Sbjct: 350 SIFAFDTETDSLD----------TQEARLVGMSFAIEPGYAAYLPLGHDYLDAPVQLPLN 399

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----P 106
            + + +   L ++ ++ +  N  ++  +      I++    +  T + +           
Sbjct: 400 DVLAAMKPILENDKILKIGQNLKYDAEVLLNY-DIELKGIAF-DTMLESYVLNSVAGMGR 457

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             + +     LN      +   GK                      +  A +    Y   
Sbjct: 458 HDMDSLAERHLNHKTVSFEEIAGKGKKQL---------------TFNQIALEQAANYAAE 502

Query: 166 DVEATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P  + E             L  +   +  +G  ID  ++    + I 
Sbjct: 503 DADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLIDAAVLAAQSKEIT 562

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270
               +L+++  +L      +   T  L+  LF    +         +  T + +L    +
Sbjct: 563 ARLAELEKEAFELAGEEF-NLASTKQLQTILFEKLQLPVVKKTPSGAPSTNEEVLEELAL 621

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L   + +       + L   +S    R+  +      + TGR S      QN
Sbjct: 622 NHALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRVHTSYHQAV-TATGRLSSRDPNLQN 680

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   IA  G K+V AD + IE R++
Sbjct: 681 IP------------------------VRTEEGRRIRQAFIARKGYKVVAADYSQIELRIM 716

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ +   + AFA G+DI+  T A+ F  P+D+V+ +QR   K +   L Y        
Sbjct: 717 AHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMS----- 771

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + +          FE +     +    + Q  E    + L G    L    
Sbjct: 772 AFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLA--- 828

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +  M      +    P      
Sbjct: 829 ------DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDAWLQTEKPH----- 875

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                                 D+L               + VH
Sbjct: 876 -------------------------------------ADML---------------MQVH 883

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E  ++   SV   +  LM ++      +PLK +      +
Sbjct: 884 DELVFEVKESELDSVTTKIRELMEQSMQ--LDVPLKVDVGIGDNW 926


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 98/703 (13%), Positives = 194/703 (27%), Gaps = 161/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
             + +D ET +   +           A +   ++A ++                      
Sbjct: 354 KLIAVDTETDNLDYM----------SANLVGISFALENGEAAYLPLRHNYIGAPQQIDFD 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              S L   L +  +  V  N  ++  +F +  GI++    +  T +L+         ++
Sbjct: 404 TALSRLKPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTY-DTMLLSYVLDSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                           +    Y   D +
Sbjct: 462 DDLAKRYLGHQTISFEEIAGKGKGQL---------------TFDQIPLEHATTYAAEDAD 506

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   +   G  ID + +L     IA+  
Sbjct: 507 ITMKLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++   +L      +   T  L+  LF   G+         +  T + +L        
Sbjct: 567 TALEQQAYELAGQTF-NLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLEELAYDHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              L++     S       + L + ++   GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   I   G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AF+ G+DI+ +T A+ F  P+++V+ EQR   K +   L Y        +  
Sbjct: 721 SKDQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMS-----SFG 775

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          F+ +   ++    +++          L      L       
Sbjct: 776 LSRQLGIPRNDAQKYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYL------- 828

Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +        +      +      +A  +     + + +                  
Sbjct: 829 --PDINSSNAIRRKAAERVAINAPMQGTAADIIKRAMIDLDKQ----------------- 869

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                    +  N       DI    M           + VHDE
Sbjct: 870 -------------------------IVGNP------DI---QMI----------MQVHDE 885

Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E            +   M K       +PL  +    + +
Sbjct: 886 LVFEVRSEKVEEFSQLIKQTMEKAAQLV--VPLIVDVGVGQNW 926


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 202/703 (28%), Gaps = 161/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESIAGKGKNQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   +   G  ID + +      IA   
Sbjct: 507 VTMKLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQL 273
             L+E   +L      +   T  L+  LF   G+ +       +  T + +L     +  
Sbjct: 567 TALEEQAYELAGQPF-NLASTKQLQEILFDKLGLPILQKTPKGAPSTNEEVLEELAYSHE 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +   L Y           
Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMS-----AFG 775

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               LD+ +          F+ +   +     ++++       + L G    L       
Sbjct: 776 LSRQLDISRPDAKKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYL------- 828

Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +        +G     +      +A  +     + +                  Y 
Sbjct: 829 --PDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVI--------------YH 872

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           D   +                                     M           + VHDE
Sbjct: 873 DPDIE-------------------------------------MI----------MQVHDE 885

Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E            +   M         +PL  E    + +
Sbjct: 886 LVFEVRSEKVEFFREQIKQQMEDASELV--VPLIVEVGVGQNW 926


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/708 (14%), Positives = 190/708 (26%), Gaps = 170/708 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
             +  D ET S  P+          QA I   +++ +                       
Sbjct: 351 KVVSFDTETTSLDPM----------QARIVGVSFSVEAGHAAYLPLEHHYAGAPQQLPLE 400

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
           A  + L  +L D +      N  ++  +     GI +       + + +         ++
Sbjct: 401 AALAKLKPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIA-DDSMLASYVLESHQRHNM 458

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  +    +   GK                            +   Y   D +
Sbjct: 459 DDLARRHLGENTVSYEEICGKGAKQIG---------------FSEVDVDIAANYAAEDAD 503

Query: 169 ATRELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            T  L +               D E  +  +   +   G  ID D +      +  +  +
Sbjct: 504 ITLRLNQFFAGQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLE 563

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL------VDMSEGTLKSILSHSNITQL 273
           L++   +L      +      L+  LF    I              T +S+L    +   
Sbjct: 564 LEQRAYELAGQPF-NLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHP 622

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               IL     +       + L   +    GR+  T     A  TGR +      QN+P 
Sbjct: 623 LPKCILEYRGLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVA-ITGRLASNDPNLQNIP- 680

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          VR   IA  G ++V AD + IE R++A +
Sbjct: 681 -----------------------VRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHL 717

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  +KAFA+GEDI+  T A+ F   +  V+ +QR   K +   L             
Sbjct: 718 SDDEGMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLI------------ 765

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+     +  +                                  +A +     +  
Sbjct: 766 --YGMSAFGLAAQLDIE------------------------------RSAAQQYIDRYFM 793

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV +  +   E                                       RRL   D
Sbjct: 794 RYPGVAEYMQATREKAREQGYVETVF--------------------------GRRLYLPD 827

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +K              R            +Q  + D++   M               +++
Sbjct: 828 IKLSNPGRRAGA---ERAAINAP------MQGTAADLIKLAMIAVQDWLERDGLQSKLIM 878

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E P      V   L  +M         +PL AE      +
Sbjct: 879 QVHDELVLEVPQAELEQVKRRLPEIMAGAAE--LKVPLLAEVGAGDSW 924


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 196/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET     +           A +   ++A ++                       +
Sbjct: 345 VAFDTETDGLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWV 394

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  F+  +  +   I++   ++  T + +           + 
Sbjct: 395 LAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +     + G Y   D + 
Sbjct: 453 SLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLDVAGPYAAEDADI 497

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L    +            E  L  +   I   G  ID  L+      IA    
Sbjct: 498 TLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLD 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    ++ +    +      L+  LF   G+ +       +  T + +L    +    
Sbjct: 558 ELETKAYEIAEQEF-NLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPL 616

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L + V+   GR+  +      + TGR S      QN+P  
Sbjct: 617 PKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 673

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G K++  D + IE R++A ++
Sbjct: 674 ----------------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLS 711

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+    PI+ V+ EQR   K +                  
Sbjct: 712 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 757

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 758 IYGMS------------------------------AFGLAKQLGMGRNEAQDYMNVYFER 787

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +      +                              +     RRL   D+
Sbjct: 788 YPGVLEYMESTRVHASEQGY--------------------------VETLFGRRLYLPDI 821

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           K              R            +Q  + DI+   M    +           +++
Sbjct: 822 KSRN---GIRRKAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 872

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++   +V   +  LM         +PL A+      +
Sbjct: 873 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADAGAGNNW 918


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 197/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           + ID ET S   +           A +   ++A +                         
Sbjct: 340 IAIDTETTSLNYM----------DAKLVGISFAIEAGKAAYLPLGHDYLDAPEQLDQAEA 389

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +  +  V  N  ++  +F   +GI +    +  T + +          ++ 
Sbjct: 390 LAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMD 447

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                    +    +    Y   D + 
Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQIDLETAAPYAAEDADI 492

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I   G  ID  ++ +    +A+   
Sbjct: 493 TLRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTID 552

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +      L++  F   G  +       +  T + +L    +    
Sbjct: 553 ELEQKAFEIAGEKF-NLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 612 PKIILQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  GKK++ AD + IE R++A ++
Sbjct: 669 ----------------------IRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLS 706

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F+    +V+ EQR   K +   L Y            
Sbjct: 707 QDEGLLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMS-----AFGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +     +    + +  +      L G    L        
Sbjct: 762 AKQLDIPRPEAQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYL-------- 813

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 814 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 849

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +  +   T+G             D++               + VHDE+V
Sbjct: 850 ---------NIAHWIATETHGEI-----------DMI---------------MQVHDELV 874

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E        +   +C LM    S    + L AE      +
Sbjct: 875 FEVDSDRAEEMQAKVCQLMADAVS--LDVELLAEAGIGDNW 913


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 200/709 (28%), Gaps = 165/709 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + ID ET     +             +   +   +         T +            
Sbjct: 350 YVAIDTETTGLDAMV----------VDLVGVSLCVEPGTACYIPLTHKQGGDDLFGGEGL 399

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D  V+ +  N  ++  +  +  GID+       T +++   
Sbjct: 400 AEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY-GIDVAP--IDDTMLMSYAL 456

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+      K  +  GK+ I        D+ PY    A+  ++ W
Sbjct: 457 HAGEHNHGMDILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADAVPYAAEDADITLRLW 516

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q F     +       +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 517 QHFKPELHQRQVTV--VYETL------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQK 568

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
              L+++I  L      +      L   LF    +      +     T   IL       
Sbjct: 569 MAALEDEIHALAGQPF-NVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDLATEH 627

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L+    S       + L + ++ D GR+  +    GA+ TGR +      QN+P
Sbjct: 628 ALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGAN-TGRMASSDPNLQNIP 686

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +   G  L+  D + IE R+LA 
Sbjct: 687 ------------------------VRSEEGRRIREAFVPEQGNVLLSLDYSQIELRILAH 722

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG D    AFA G+DI+  T ++ F+ P+++++ + R   K +                
Sbjct: 723 VAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAIN--------------F 768

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 769 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 798

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+        E                                 +     R++   
Sbjct: 799 ERFPGIRAYMDRTVEFAKEHGY--------------------------VQTLFGRKIHTP 832

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + +          R            +Q  + D++   M             ++L 
Sbjct: 833 ----EIAAKGPRAGFAKRAAINAP------IQGTAADVIRRAMVKMPPAIAHLPARMLLQ 882

Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+      + T   +M     P+    + L  +      +
Sbjct: 883 VHDELLFEVPEAAVEETIETARRVMENAADPALHLDVKLSVDAGRGNNW 931


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/720 (14%), Positives = 199/720 (27%), Gaps = 186/720 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----------QSA 52
           + +D ET     +           A +   +   D                        A
Sbjct: 345 VAVDTETTGLNEMR----------ADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEA 394

Query: 53  MPSD-----------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
             ++           L   L D  V+ +  N  ++  +  +  GI +       T +L+ 
Sbjct: 395 KLAEGQLDFETALGMLKPVLEDPAVLKIGQNMKYDAKILARN-GITVAP--IDDTMLLSY 451

Query: 102 TNGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                     +       L+ +    K  +  GK+ I                       
Sbjct: 452 ALHAGLHGHGMDALSERYLDHTPIPIKTLLGTGKSAITFDFVPI---------------- 495

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDL 205
            +   +Y   D E T  L++RL P              ER +  +   +  RG ++D D 
Sbjct: 496 -EEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDT 554

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261
           + ++    AQ+   L+ +I +L  G   +      L   LF   G +     +     T 
Sbjct: 555 LSRMSNAFAQKMAGLEAEIHELA-GESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTP 613

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L            +L+    S       + L + ++   GR+  +    GA+ TGR 
Sbjct: 614 ADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGAN-TGRL 672

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P                                +R   +A  G  LV  D
Sbjct: 673 ASTDPNLQNIP------------------------VRSEEGRRIREAFVAEPGHVLVSLD 708

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA IAG D    AF +G DI+  T ++ F+ P+D+++ E R   K +     
Sbjct: 709 YSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINF--- 765

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+                                   A   ++  
Sbjct: 766 -----------GVIYGISGF------------------------------GLARNLRIPR 784

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +     +  +  G+     D                                    +
Sbjct: 785 AEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKY--------------------------V 818

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616
                R++       +            R            +Q  + DI+   M      
Sbjct: 819 QTLFGRKIHTP----EIGAKGPQAGFAKRAAINAP------IQGTAADIIRRAMVRMPAA 868

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT--KNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E  +     V   +  +M     P     +PL  +  + + +
Sbjct: 869 IADLPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSW 928


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 409 TALAAIKLILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    Q   EY   D +
Sbjct: 467 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLQQATEYAAEDAD 511

Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L      E             L  +   +   G  ID D +      IA   
Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 571

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++    L      +   T  L+  LF   G+         +  T + +L   + +  
Sbjct: 572 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+S  GR+  +      + TGR S      QN+P 
Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +                 
Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 771

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   + +  +     +     +  
Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 801

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V Q   D+                                   +     RRL   D
Sbjct: 802 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 835

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627
           +    +          R            +Q  + DI+   M    +        ++++ 
Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 886

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +   +         +PL  E    + +
Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 931


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   +           A +   ++A +         T                
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQINKTVAL 394

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +    +  T + +           +  
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++   
Sbjct: 498 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L+E    +      +      L++  F   G  +       +  T + +L    +     
Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 672

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G+K++ AD + IE R++A ++ 
Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y             
Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    +      L G    L +   R   
Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +      +           +G +    + A +                            
Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +Q ++  T G                   M           + VHDE+V 
Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C+LM +       + L AE      +
Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 196/709 (27%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET              A++A +   ++A                         A+
Sbjct: 336 FAFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAV 385

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D     V  N+ ++  +    +  I +    +  T + +           +
Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIAMRGVAY-DTMLESYVLNSTATRHDM 444

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+ +    +   GK                      +       G Y   D +
Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQIDLDKAGPYAAEDAD 489

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L               D E  L  +   I  +G  +D  L+      + ++ 
Sbjct: 490 ITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGEKM 549

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
            +L+    +L      +      L   L+   G+ ++  +      T +++L        
Sbjct: 550 AELERRAYELAGEEF-NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELAELGY 608

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G KL+ AD + IE R++A 
Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF N  D++  T A+ F   ++ V+ +QR   K +                
Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALENVTVDQRRKAKAINF-------------- 749

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 780 ARYPGVLAYMERTRTQAAEQG--------------------------FVETLFGRRLYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D+      L        R            +Q  + DI+   M N             ++
Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVI 864

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +   M+K       +PL  E      +
Sbjct: 865 LQVHDELVLEVREDLVEQVKDEIRQHMSKAAQ--LDVPLLVEAGIGANW 911


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 196/709 (27%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+T   V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 404 LAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQLAGKGKNQL---------------TFNQIDLNEAAVYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   +   G  ID   +    + IA    
Sbjct: 507 TLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLG 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQKAYEIAGQPF-NMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+     I++VS EQR   K +                  
Sbjct: 721 GDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL     
Sbjct: 797 YPGVMQYMEDTRSNAAQHGYVETIF--------------------------GRRLHLP-- 828

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIV 625
             + +  N    +   R            +Q  + DI+ + M                ++
Sbjct: 829 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLL 880

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 881 MQVHDELVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   +           A +   ++A +         T                
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +    +  T + +           +  
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++   
Sbjct: 498 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L+E    +      +      L++  F   G  +       +  T + +L    +     
Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 672

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G+K++ AD + IE R++A ++ 
Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y             
Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    +      L G    L +   R   
Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +      +           +G +    + A +                            
Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +Q ++  T G                   M           + VHDE+V 
Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C+LM +       + L AE      +
Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D+ET     L           A I   ++A                         A+
Sbjct: 351 FAFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  ++R + K    I++   ++  T + +           + 
Sbjct: 401 LAQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMD 458

Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +    Y   D + 
Sbjct: 459 SLSARWLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 503

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   +   G  ID  ++ +  + +     
Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLA 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +   T  L++ LF   GI     +      T + +L+   +    
Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G ++V AD + IE R++A ++
Sbjct: 680 ----------------------VRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ GEDI+  T ++ F  P+ KV+ EQR   K +                  
Sbjct: 718 QDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  ++  +  A                              +     RRL   D+
Sbjct: 794 YPGVLRYMENTRQLAASNGY--------------------------VETLDGRRLWLPDI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K   +          R            +Q  + DI+   M            +   +++
Sbjct: 828 KSSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDDWLQKQTDDAVRMIM 878

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E            + +LM  +   A  +PL  E      +
Sbjct: 879 QVHDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924


>gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/700 (15%), Positives = 202/700 (28%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + ID ET S +P+           A I   ++A +                       A+
Sbjct: 340 VAIDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAV 389

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L D +   +  N  ++R +F    GI +   R   T + +       P SL++
Sbjct: 390 LARLKPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVR-HDTMLESYVLEAHKPHSLES 447

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK +                             EY   D E  
Sbjct: 448 LAERHLGRKGLSYEDLCGKGVNQ---------------IPFAQVDVARATEYSAEDSEMA 492

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             + + L P  +            E  +  +   I   G  +D   + +    +A+    
Sbjct: 493 LHVHQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVA 552

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----MSEGTLKSILSHSNITQLAK 275
           L++++  + +    +      +   LF   G+ +       +  T + +L+         
Sbjct: 553 LEQEVYAIAEQPF-NLGSPKQIGEILFGKLGLPVKKRTASGAPSTDEDVLTELAADYPLP 611

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             IL   + +       + L   V+   GR+        A  TGR +      QN+P   
Sbjct: 612 ARILEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIP--- 667

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   +A  G  ++ AD + IE R++A I+ 
Sbjct: 668 ---------------------IRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISE 706

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  ++AF+ G D++  T A+ F  P+ +V+ EQR   KV+   L Y  G          
Sbjct: 707 DEGLLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMG-----AYGLA 761

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L ++Q +        F  +   + +    + +  E    + + G    L         
Sbjct: 762 ANLGIEQKAAKDYIDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWL--------- 812

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +         G                                       +L    V+
Sbjct: 813 PEINSGNGPRRSGAERQAINAPMQGTAADLI---------------------KLAMIAVQ 851

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
            +      AT                                       +V+ VHDE+V 
Sbjct: 852 KELDASGRATR--------------------------------------MVMQVHDELVL 873

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+         +  LM      A  +PL AE      +
Sbjct: 874 EVPEAELDWAKDAIPRLMAGVA--ALKVPLLAEVGVGANW 911


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET S   L           A I   ++A                          +
Sbjct: 352 FAFDLETDSLDTL----------SANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  F+R + K+   I++   R+  T + +           + 
Sbjct: 402 LARLKPLLEDPQSQKVGQNLKFDRGVLKRY-DIELLGIRF-DTMLESYALNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +  A +    Y   D + 
Sbjct: 460 TLASRWLQHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++    + +     
Sbjct: 505 TLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +      L+  LF   GI     +      T + +L+   +    
Sbjct: 565 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA+ +DI+  T A+ F   +DKVS EQR   K +                  
Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GL 764

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 765 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 794

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVLQ  +   E  A                              +     RRL   D+
Sbjct: 795 YPGVLQYMESTRELAAQKGY--------------------------VSTLDGRRLYLPDI 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
               +          R            +Q  + DI+   M                +++
Sbjct: 829 NASNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIM 879

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       +    + +LM  +      +PL+ +      +
Sbjct: 880 QVHDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 191/708 (26%), Gaps = 170/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET              A+QA I   ++A +                       A+
Sbjct: 343 FAFDTETTGLD----------AQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAV 392

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D     +  N+ ++  +        +       T + +           + 
Sbjct: 393 LLALKPLLEDPAKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTATRHDMD 452

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+ +    +   GK                      +    +  G Y   D + 
Sbjct: 453 SLAQKYLDHTTIGFEDIAGKGAKQL---------------TFNQIPLEKAGPYAAEDADV 497

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L               D E  L  +   I  +G  +D  L+      +  +  
Sbjct: 498 TLRLHHALQARLANTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLGVQSGELGAKLV 557

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-QL 273
           +L+ +   L      +      L   L+   G+ ++  +      T +++L         
Sbjct: 558 ELEREAYALAGEEF-NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDDLAEQGYP 616

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P 
Sbjct: 617 LPKVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP- 674

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +AS G KL+ AD + IE R++A +
Sbjct: 675 -----------------------VRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHL 711

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A ++  + AF N  D++  T A+ F   +  V+ +QR   K +                 
Sbjct: 712 AKDEGLLHAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAINF--------------G 757

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + A
Sbjct: 758 LIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYFA 787

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +      A                              +     RRL   D
Sbjct: 788 RYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLPD 821

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVL 626
           +      L        R            +Q  + DI+   M          K    ++L
Sbjct: 822 INAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVAVDNWLTDSKLDARVIL 872

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +   M+        +PL  E      +
Sbjct: 873 QVHDELVLEVREDLVEQVKDEIRGYMSGAAE--LDVPLLVEVGVGSNW 918


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54
           +  ID ET +              QA +   + A +++                 +  + 
Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVL 371

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
           + L   L +  +  +  N  ++  + K   GI +   R+  T + +           + +
Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +   GK                           +  G Y   D + T
Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             L  +L P+ D          E  L  +   +   G  ID  ++ K    + ++ K L+
Sbjct: 475 LRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           ++ V+L  G   +      L+  LF    +            T +S+L           +
Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + S      ++ L + ++    R+  +     A  TGR S      QN+P     
Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  IA  G  ++ AD + IE R++A ++ +D
Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AFANG DI+  T ++ F T ++ VSKEQR   K +                    G
Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYG 734

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A +  +     +     +  ++  
Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           VL+  +   +    +                            +     RRL   ++   
Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629
            + +        R    G       +Q  + DI+ + M                +++ VH
Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVH 849

Query: 630 DEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E           +   LM +       +PL         +
Sbjct: 850 DELVFEVRKEAVEECHAIIHNLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   +           A +   ++A +         T                
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +    +  T + +           +  
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++   
Sbjct: 498 LRLHQHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L+E    +      +      L++  F   G  +       +  T + +L    +     
Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 672

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G+K++ AD + IE R++A ++ 
Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y             
Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    +      L G    L +   R   
Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +      +           +G +    + A +                            
Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +Q ++  T G                   M           + VHDE+V 
Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C+LM +       + L AE      +
Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/717 (13%), Positives = 194/717 (27%), Gaps = 178/717 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51
                D ET              A QA +   ++A           T           + 
Sbjct: 344 KLFAFDTETT----------GIDAHQAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRD 393

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104
            +   L   L D T + +  ++ F+  +            GI +    +  T + +    
Sbjct: 394 TVLRALKPLLEDPTKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIAF-DTMLESYVLN 452

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  + +     L++     +   GK                         A +  G
Sbjct: 453 ATATRHDMDSLAKKYLDYDTVSFQDIAGKGAKQL---------------TFDQIALEQAG 497

Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L               D E  L  +   I  +G  +D  L+   
Sbjct: 498 PYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPVLARIERQGALVDAQLLGVQ 557

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL 265
              +  +  +L+    ++  G   +      L   L+   G+            T + +L
Sbjct: 558 SIELGNKMVELERQAFEIA-GEAFNLGSPKQLGAILYEKLGMPVLKKTGKGQASTAEDVL 616

Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +           +++   + S       + L E ++   GR+  +     A  TGR S  
Sbjct: 617 AKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSS 675

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A  G KL+ AD + 
Sbjct: 676 DPNLQNIP------------------------VRTAEGRRIRQAFVAPKGYKLLAADYSQ 711

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ ++  + AF +  D++  T A+ F   + +V+ +QR   K +        
Sbjct: 712 IELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINF------ 765

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 +      +     
Sbjct: 766 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 787

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + A++ GV +  +      +                              +   
Sbjct: 788 KAYIDVYFARYPGVREYMERTRAQASDQGY--------------------------VETF 821

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RRL   D+  +      A     R            +Q  + DI+ + M         
Sbjct: 822 FGRRLYLPDIHSNKPQERAAA---ERTAINAP------MQGTAADIIKKAMVRVDNWLTA 872

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E  +     V   +   M+        +PL  E      +
Sbjct: 873 SGLDAKVILQVHDELVLEVREDLVAEVSEKVREHMSAAAQ--LDVPLLVEVGVGDNW 927


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 187/700 (26%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A +   ++A +                          
Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +       T + +           +  
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLKGV-VFDTMLESYVFNSVASRHDMDG 453

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 454 LALKYLGHKNIAFEDIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 498

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++  +
Sbjct: 499 LRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDE 558

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L+     +      +      L++  F   G          +  T + +L    +     
Sbjct: 559 LETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLP 617

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 618 KVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 673

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G+K++ AD + IE R++A ++ 
Sbjct: 674 ---------------------IRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQ 712

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D V+ EQR   K +   L Y             
Sbjct: 713 DAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGLA 767

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    E      L G    L         
Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYL--------- 818

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                      ++                        
Sbjct: 819 PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS----------------------- 855

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +  ++  T G                   M           + VHDE+V 
Sbjct: 856 ---------IADWIKTDTQGE----------------ITMI----------MQVHDELVF 880

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C LM K  +    + L AE      +
Sbjct: 881 EVDADKAETLKLKVCELMAKAAN--LDVELLAEAGIGDNW 918


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/705 (16%), Positives = 193/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMP 54
             D ET S  P+           A I   + A +                     +  + 
Sbjct: 341 SFDTETTSLDPMV----------AQIVGISIAVEAGKAAYIPVAHHGPDAPVQLPRDEVL 390

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L       V  +  ++  +     GI +       T + +       P  + N 
Sbjct: 391 AKLKPWLESRDKKKVGQHLKYDEQVLANY-GITMDGIE-HDTLLQSYVLESHRPHDMDNL 448

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 449 ALRHLGLKTIKYEDVAGKGASQIG---------------FDEVALDKASEYAAEDADITL 493

Query: 172 ELFKRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P    E  L  +            + +   G  ID++ +      IA    +L
Sbjct: 494 RLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEIATRLVEL 553

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +     L  G   +      +    F    +         +  T + +L           
Sbjct: 554 ERQAYDLAGGEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 612

Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL     S       + L   V+ S GR+        A  TGR +      QN+P    
Sbjct: 613 TILEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 667

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G KLV AD + IE R++A I+G+
Sbjct: 668 --------------------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGD 707

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AF  GEDI+  T ++ F+    +VS +QR I KV+                    
Sbjct: 708 EALLRAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINF--------------GLIY 753

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+     + N+                               +   A +L    + A++ 
Sbjct: 754 GMSSFGLASNL------------------------------GITRDAAKLYIDRYFARYP 783

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    ++                                          RRL   ++ G
Sbjct: 784 GVAAYMENTRTSAKMKGYVETVF--------------------------GRRLWLPEING 817

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629
                  A     R            +Q  + D++   M    K          +++ VH
Sbjct: 818 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQKWIEESGIRTRMIMQVH 868

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  LM         +PL AE      +
Sbjct: 869 DELVLEVPDDELSDVRKRLPELMCGVAQ--LKVPLVAEVGAGANW 911


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 99/697 (14%), Positives = 193/697 (27%), Gaps = 149/697 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
               D ET S   +          +A +   ++  +                        
Sbjct: 331 TFAFDTETNSLDYM----------EAELVGLSFCAEPGVACYVPVAHDYPGAPDQLSRDY 380

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + L   L D     V  +  ++  +     GI +       T + +           +
Sbjct: 381 VLNQLKDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFA-GDTMLESYVLDSVGGRHDM 438

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                     +    WQL+ EY    + 
Sbjct: 439 DSLAERYLGRRTISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADITWQLY-EYLTNQLT 497

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           AT  L       +D E  L  + Q+I   G  +  +++ +   +I     +L+ +   L 
Sbjct: 498 ATESLHTV---YTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIELEAEAHDLA 554

Query: 229 DGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                +   T  L   LF    + +       +  T + +L    +      ++L     
Sbjct: 555 GRPF-NLGSTKQLGEILFDELKLPIIKKTPKGAPSTGEEVLVELALDYPLPKVLLEYRGL 613

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +       + L   ++   GR+  +      + TGR S      QN+P            
Sbjct: 614 AKLKSTYTDKLPTLINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP------------ 660

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                          +    +R   IA     +V AD + IE R++A ++G+   + AF 
Sbjct: 661 ------------IRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLTAFN 708

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D++  T A+ F   +D+V+ +QR   K +                    G+      
Sbjct: 709 EGLDVHAATAAEVFGVALDEVTSDQRRSAKAINF--------------GLIYGMS----- 749

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A +  +     +     +  ++ GVL     
Sbjct: 750 -------------------------AFGLAKQLHIGRAESQAYIDTYFQRYPGVLDYMDR 784

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
             +G                                      RRL   ++          
Sbjct: 785 TRQGAHERGYVETIF--------------------------GRRLYLPEIN--------- 809

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637
               MR +          +Q  + DI+ + M    +          +++ VHDE+V E P
Sbjct: 810 ARNKMRVQAAERTAINAPMQGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVP 869

Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++   + + M      A  +PL  E      +
Sbjct: 870 KHELDALRAGVITAMESAAQLA--VPLLVEVGLGDNW 904


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 202/706 (28%), Gaps = 166/706 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A                       + A+
Sbjct: 352 IAFDSETTSID----------AQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D     V  ++ ++  +       I +    +  T + +           +
Sbjct: 402 LKALKPILEDPAKAKVGQHAKYDINVLANASTPIAVQGVAF-DTMLESYVLDSTATRHDM 460

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L  S    +   G+                         A +  G Y   D +
Sbjct: 461 DSLALKYLGHSTIRFEDIAGRGAKQL---------------TFDQIALEQAGPYAAEDAD 505

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D  L+ +    + ++ 
Sbjct: 506 VTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKL 565

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
            +L+    ++      +      L + L+   G  ++  +      T +++L+       
Sbjct: 566 VELERKAFEIAGEEF-NLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDF 624

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +++   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 625 ELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 683

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G K++ AD + IE R++A 
Sbjct: 684 ------------------------IRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAH 719

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF +  D++  T A+ F   +++V+ +QR   K +   L Y          
Sbjct: 720 LAKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMS-----AF 774

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                +D+++          F  +    S+    + Q  E    + + G    L      
Sbjct: 775 GLAKQIDVERKEAQAYIDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYL------ 828

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +    + + +G                                I  P        
Sbjct: 829 ---PEIHAQNQAMRKGAERAA---------------------------INAPM------- 851

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI---SRDILCEGMKNATKNGYDIVLTV 628
                     TA   + R         ++ +Q     +R I                L V
Sbjct: 852 --------QGTAADIIKRAMI----AVDDWLQGSGIDARII----------------LQV 883

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +     V   L +LM         +PL  E      +
Sbjct: 884 HDELVLEVREDLLEEVGAQLKALMGGAAQ--LDVPLLVEVGVGANW 927


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 198/700 (28%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   +           A +   ++A +         T                
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +    +  T + +           +  
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++   
Sbjct: 498 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L+E    +      +      L++  F   G  +       +  T + +L    +     
Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + S       + L   V+   GR+        A  TGR S      QN+P   
Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANA-ATGRLSSSEPNLQNIP--- 672

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G+K++ AD + IE R++A ++ 
Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y             
Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    +      L G    L +   R   
Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +      +           +G +    + A +                            
Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +Q ++  T G                   M           + VHDE+V 
Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C+LM +       + L AE      +
Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D+ET     L           A I   ++A                         A+
Sbjct: 351 FAFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  ++R + K    I++   ++  T + +           + 
Sbjct: 401 LAQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMD 458

Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +    Y   D + 
Sbjct: 459 SLSARWLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 503

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   +   G  ID  ++ +  + +     
Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLA 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +   T  L++ LF   GI     +      T + +L+   +    
Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G ++V AD + IE R++A ++
Sbjct: 680 ----------------------VRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ GEDI+  T ++ F  P+ KV+ EQR   K +                  
Sbjct: 718 QDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  ++  +  A                              +     RRL   D+
Sbjct: 794 YPGVLRYMENTRQLAASNGY--------------------------VETLDGRRLWLPDI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K   +          R            +Q  + DI+   M            +   +++
Sbjct: 828 KSSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIALDDWLQKQTDDAVRMIM 878

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E            + +LM  +   A  +PL  E      +
Sbjct: 879 QVHDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/708 (15%), Positives = 198/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFATQEGVAAYVPVAHDYLDAPQQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+T   V  N  ++  +  +   I++   +   T + +           + 
Sbjct: 404 LEQLKPILEDDTQAKVGQNLKYDASVLARY-DIELKGIK-HDTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDEASPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   D            E  L  +   I   G  ID   +    + IAQ   
Sbjct: 507 TLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLD 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINSETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+   T ID+VS EQR   K +                  
Sbjct: 721 GDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 797 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQAEGDGRVKLLM 881

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 882 QVHDELVFEVQESALTEIESKVQELMESAAELA--VPLVAEAGHGDNW 927


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 191/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D ET +            A QA +   ++A +                     +  +
Sbjct: 335 FAFDTETTALD----------AMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRV 384

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            + L   L D     V  N  ++  +  +   I +       T + +          L +
Sbjct: 385 LARLKPLLEDPGRPKVGQNLKYDMSVLARY-DIALRGIA-HDTLLESYVLDSTARHDLDS 442

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L+      +   GK                           +  G Y   D E T
Sbjct: 443 LAKRFLDHDTIRFEDVAGKGAKQIG---------------FDQVPLEQAGPYAAEDAEVT 487

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L +   P             + E  L  +   +   G  ID   +      +A++  +
Sbjct: 488 LRLHRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAELARKILE 547

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QLA 274
           L+E   ++  G   +      +    F   G+         +  T + +L          
Sbjct: 548 LEESAYRVA-GRRFNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLAAEGHEL 606

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL+    S       + L   V  D GR+  +      + TGR S      QN+P  
Sbjct: 607 PRIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 663

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA++G +L+ AD + IE R++A ++
Sbjct: 664 ----------------------IRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLS 701

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++  + AFA G+DI+  T A+      + V+ EQR   K +                  
Sbjct: 702 GDERLLAAFAGGQDIHRATAAEILGLAPEDVTGEQRRSAKAINF--------------GL 747

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +   A +     +  +
Sbjct: 748 IYGMS------------------------------AFGLARQLGIERGAAQEYVDRYFER 777

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV                                          +     RRL   ++
Sbjct: 778 YPGVRDFMDRTRRQVREDGY--------------------------VETLFGRRLHLPEI 811

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                    A  +               +Q  + DI+   M               ++L 
Sbjct: 812 GHGNQARRAAAERTA---------INAPMQGTAADIIKRAMIAVDAWIEAEQPAARLILQ 862

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  ++        +C+ M      A  +PL  +  E   +
Sbjct: 863 VHDELVLEVAESAVEETRARVCAAMETAAELA--VPLVVDIGEGANW 907


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 210/709 (29%), Gaps = 166/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           + +D ET S   +          QA +   + A +                         
Sbjct: 353 VAVDTETTSLNEM----------QAALVGISLAVEPGRACYIPLRHTEGASGDLFSSDAL 402

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                   A+   L   L D+ ++ +  N  ++  +F +     I    +  T +++   
Sbjct: 403 AEGQLDLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARH---GIRVAPFDDTMLMSYAL 459

Query: 104 GLP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+      K     GK+ +        D+  Y    A+  ++ W
Sbjct: 460 NAGIHGHGMDTLSERYLSHQPIPIKELLGTGKSAVTFDRVPVADAVKYAAEDADITLRLW 519

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +F     R+   T  +++ L      ER L  +   +   G ++D + + ++    AQ+
Sbjct: 520 HVFKPQLHREKVTT--VYETL------ERPLSPVLAQMERNGIKVDRETLSRMSGKFAQK 571

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
             +L+E+I +L      +      L   LF   G+D     +     T   +L       
Sbjct: 572 MAQLEEEIHELAGRKF-NVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLEDLATEH 630

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +L+  A S       + L + +  D GR+  +    GA+ TGR +      QN+P
Sbjct: 631 DLPARVLDWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGAT-TGRLASTDPNLQNIP 689

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G  LV  D + IE R+LA 
Sbjct: 690 ------------------------VRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAH 725

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA  D   +AF +G+DI+  T ++ F+ P+D+++ E R   K +                
Sbjct: 726 IADIDALRQAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN--------------F 771

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 772 GVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRYF 801

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+        +                                 +    +R++   
Sbjct: 802 ERFPGIKTYMDKTVDFAKEHG--------------------------FVQTLFNRKIHTP 835

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + S          R            +Q  + DI+   M             ++L 
Sbjct: 836 ----EISAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPAAIEGMPAKMLLQ 885

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           VHDE++ E       ++  T   +M     P+    +PL  +  +   +
Sbjct: 886 VHDELIFEVEAGAADALIATARDVMEAAADPAVKIDVPLVVDAGQGANW 934


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 193/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D ET S   +          +A I   ++A +                     + A+
Sbjct: 331 FAFDTETTSLNYM----------EAEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRDAV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     +  N  ++  +  +   I +    +  T + +           + 
Sbjct: 381 LAALKPLLEDPDKAKLGQNLKYDASVLARY-DIAMQGIAF-DTMLESYVLDSTGTRHDMD 438

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                           +    Y   D E 
Sbjct: 439 SLALKYLGRSTTHFEDVAGKGAKQ---------------ITFDKVGIEEAAAYAAEDAEV 483

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P               E  L  +   +   G  +D + + +    + Q  +
Sbjct: 484 TLALHETLWPKLQETPSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQ 543

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
            L+E+   +  G + +      L   LF    +         +  T + +L    +    
Sbjct: 544 ALEEEAHNVA-GQVFNLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEEVLQELALDYPL 602

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 603 PKLLIEHRGLSKLKSTYTDKLPGMINSHTGRIHTSYHQAV-TATGRLSSSDPNLQNIP-- 659

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G ++V AD + IE R++A ++
Sbjct: 660 ----------------------IRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLS 697

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF    D++  T A+ F  P+D VS EQR   K +                  
Sbjct: 698 EDPGLLAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINF--------------GL 743

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  L     +     +  +
Sbjct: 744 IYGMS------------------------------AFGLARQLHLDRGEAQRYIDVYFER 773

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV Q                                        +     RRL   ++
Sbjct: 774 YPGVRQYMVRTRALAHEQGY--------------------------VETLFGRRLYLPEI 807

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                         MR++          +Q  + DI+   M               +++ 
Sbjct: 808 N---------VRNKMRQQAAERTAINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQ 858

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  ++    V   LC LM+     A  +PL  E      +
Sbjct: 859 VHDELVLEVAESQLDPVCDELCRLMSAAADLA--VPLLVEAGRGANW 903


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   +           A +   ++A +         T                
Sbjct: 359 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 408

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L D  +  V  N  ++  +     GI +    +  T + +           +  
Sbjct: 409 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 466

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                      +    +    Y   D + T
Sbjct: 467 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 511

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  + E             L  +   I  +G  ID  L+ +  + +A++   
Sbjct: 512 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 571

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L+E    +      +      L++  F   G  +       +  T + +L    +     
Sbjct: 572 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 630

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P   
Sbjct: 631 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 686

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G+K++ AD + IE R++A ++ 
Sbjct: 687 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 725

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G+DI+  T A+ F T  D+V+ EQR   K +   L Y             
Sbjct: 726 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 780

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             LD+ +        + F  +     +    +    +      L G    L +   R   
Sbjct: 781 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 840

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +      +           +G +    + A +                            
Sbjct: 841 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 868

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                     +Q ++  T G                   M           + VHDE+V 
Sbjct: 869 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 893

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E       ++   +C+LM +       + L AE      +
Sbjct: 894 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 931


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 192/708 (27%), Gaps = 170/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D ET     +           A +   ++A               +          +
Sbjct: 344 FAFDTETDGLDII----------NANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLV 393

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L +     V  N  F++ +  +  GI +    +  T + +           + 
Sbjct: 394 LDKLKPLLENPQKQKVGQNLKFDKSILARC-GIVLQGIAF-DTMLESYILNTVAGRHDMD 451

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +    Y   D + 
Sbjct: 452 SLSQRYLQHKTITFEEIAGKGKSQL---------------TFNQIALEQAAPYAAEDADI 496

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L P               E  L  +   I   G  ID  ++ +  + +     
Sbjct: 497 TLRLHHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVLIDRAVLAQHSQELTTRLT 556

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+E    L +    +      L+  L+    +         +  T + +L+   +    
Sbjct: 557 ELEEQAHLLAEEPF-NLASPKQLQTILYEKQQLPVLKKTPKGAPSTDEEVLAELALDYPL 615

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 616 AKVLLEYRGLAKLKTTYTDKLPSMINPTSGRVHTSYHQAV-TVTGRLSSREPNLQNIP-- 672

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 673 ----------------------IRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLS 710

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   IKAF   +DI+  T A+ FN  ++  + EQR   K +                  
Sbjct: 711 QDSGLIKAFTADKDIHRATAAEVFNVSVETATDEQRRSAKAINF--------------GL 756

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     + A+
Sbjct: 757 IYGMS------------------------------AFGLARQLGIARVEAQHYIDLYFAR 786

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    + + +  A                                  S RRL   D+
Sbjct: 787 YPGVANYMEAIRKQAATQGYVTTL--------------------------SGRRLYLPDI 820

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTV 628
               +          RE           +Q  + DI+   M         +    +++ V
Sbjct: 821 NASSAMRR---KAAEREAINAP------MQGTAADIIKSAMIEIDAWLQHQPLVRMIMQV 871

Query: 629 HDEIVSETPDTPYF-SVGTLCSLMTKNPS--WAKGLPLKAEGYEAKRY 673
           HDE+V E  ++    +V  +  LM +         +PL         +
Sbjct: 872 HDELVFEVHESVVQGAVEKIRHLMEQTTEKSMPLTVPLCVNIGVGANW 919


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/712 (15%), Positives = 198/712 (27%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L +D ET S  P+          QA +   + +                          
Sbjct: 391 FLAVDTETDSLFPM----------QARLVGVSLSLLPGEACYIPLQHGAGGGLDFADAGG 440

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L D +++ +  N  F+  + ++     I  K    T +++    
Sbjct: 441 QPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH---GIQLKGLDDTMLMSYALD 497

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L           GK                               
Sbjct: 498 AGVHGHGMDELSELHLGHKPISFAEVAGKG---------------KAQITFDQVPVDRAT 542

Query: 161 EYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L+  L P    ER           L  +   +   G ++D  ++ +L 
Sbjct: 543 AYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLS 602

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
              +Q+  + +++I +L  G   +      L   LF    ++    ++     T    L 
Sbjct: 603 GDFSQKMAQYEDEIYELA-GERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTLE 661

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                       +L+    S       + L E ++   GR+        ++ TGR +   
Sbjct: 662 ALAAKGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLA-STSTGRLASTE 720

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R+  +A  G  L+ AD + I
Sbjct: 721 PNLQNIP------------------------VRTEDGRKIRTAFVAEKGNLLISADYSQI 756

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA IA  +   KAFA G DI+  T ++ F  PI+ +    R   K +   + Y   
Sbjct: 757 ELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYG-- 814

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + +          F+ +    ++    +D   +    + + G    
Sbjct: 815 ---ISAFGLANQLGIPRQEAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIH 871

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
           L       K+                   +G +    R A               I +P 
Sbjct: 872 LPAINS--KNPAEKSFM---ERAAINAPIQGSAADIIRRAM--------------IRMP- 911

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
                                                 QA++ D               +
Sbjct: 912 --------------------------------------QALA-D-AKLA--------ARM 923

Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTK--NPSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ E P+        +   +M+    P+ A  +PL  +   AK +
Sbjct: 924 LLQVHDELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDARAAKNW 975


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET S   L           A I   ++A                          +
Sbjct: 314 FAFDLETDSLDTL----------SANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDV 363

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  F+R + K+   I++   R+  T + +           + 
Sbjct: 364 LARLKPLLEDPQSQKVGQNLKFDRGVLKRY-DIELLGIRF-DTMLESYALNSVAGRHDMD 421

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +  A +    Y   D + 
Sbjct: 422 TLASRWLQHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 466

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++    + +     
Sbjct: 467 TLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLA 526

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +      L+  LF   GI     +      T + +L+   +    
Sbjct: 527 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 585

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 586 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 642

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 643 ----------------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLS 680

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA+ +DI+  T A+ F   +DKVS EQR   K +                  
Sbjct: 681 QDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GL 726

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 727 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 756

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVLQ  +   E  A                              +     RRL   D+
Sbjct: 757 YPGVLQYMESTRELAAQKGY--------------------------VSTLDGRRLYLPDI 790

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
               +          R            +Q  + DI+   M                +++
Sbjct: 791 NASNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIM 841

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       +    + +LM  +      +PL+ +      +
Sbjct: 842 QVHDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 887


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/716 (15%), Positives = 201/716 (28%), Gaps = 178/716 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L  D ET S  P+          QA +   + A             +             
Sbjct: 398 LAFDTETTSVDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGTVE 447

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                    + L   L D +V+ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 448 GQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDA 504

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G    +                   +        
Sbjct: 505 GTGSHGMDPLSERWLGHTPIAYKDVAGSGKSS---------------VTFDMVDIDRATA 549

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 550 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 609

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +AQ     +++I +L  G   +      L   LF   G+     ++     T   +L  
Sbjct: 610 DLAQAAAAYEDEIYELA-GERFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 668

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      I++    +       + L   ++   R   T     ++ TGR S     
Sbjct: 669 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTSTGRLSSSDPN 728

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G KL+ AD + IE 
Sbjct: 729 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 764

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +           
Sbjct: 765 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 815

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 816 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 840

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +  +  G+    +                                           R
Sbjct: 841 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 874

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KN 620
           R  Y D++     +        R            +Q  + DI+   M          K 
Sbjct: 875 RAHYPDIRASNPQIRAF---NERAAINAP------IQGSAADIIRRAMIRMEDALAKEKL 925

Query: 621 GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E P+     +V  +  +M     P+ +  +PL  +   A  +
Sbjct: 926 AARMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDARAAHNW 981


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/709 (13%), Positives = 201/709 (28%), Gaps = 165/709 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +             +   +   +         T +            
Sbjct: 351 YVAVDTETTGLDEMV----------VDLVGISLCVEPGEACYIPLTHKVGGDDLFGGEGL 400

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D  ++ +  N  ++  +  +             T +++   
Sbjct: 401 AEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY---GADVAPIDDTMLMSYAL 457

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+      K  +  GK+ I        ++ PY    A+  ++ W
Sbjct: 458 HAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANAVPYAAEDADITLRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     ++   T  +++ L      ER L  +   +   G ++D +++ ++    AQ+
Sbjct: 518 QLFKPQLHQEQVTT--VYETL------ERPLVPVLAQMERHGIKVDREVLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
              L+ +I ++      +      L   LF    +      +     T   IL       
Sbjct: 570 MAGLESEIHEMAGADF-NVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDLATEH 628

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L+    S       + L + ++    R+  +    GAS TGR +      QN+P
Sbjct: 629 ALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGAS-TGRMASTDPNLQNIP 687

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G  L+  D + IE R+LA 
Sbjct: 688 ------------------------VRTEEGRRIREAFVAGEGNVLLSLDYSQIELRILAH 723

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG D   +AFA G+DI+  T ++ F+ P+ +++ + R   K +                
Sbjct: 724 MAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAIN--------------F 769

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 770 GVIYGISGF------------------------------GLARNLRIPRKEAQDFIDRYF 799

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +      E                                 +     R++   
Sbjct: 800 QRFPGIRRYMDSTVEFAKEHG--------------------------FVQTLFGRKIHT- 832

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + +          R            +Q  + D++   M             ++L 
Sbjct: 833 ---AEINAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPGAIAHLPARMLLQ 883

Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+      +     +M     P+    + L  E  + + +
Sbjct: 884 VHDELLFEVPEAAVEETIAVAKEVMEGAANPAVHLDVKLLVEAGQGQNW 932


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/714 (15%), Positives = 188/714 (26%), Gaps = 184/714 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
            + +D ET S   +             +   + A                          
Sbjct: 339 HVAVDTETDSLDSV----------SGGLVGVSLALAPGEACYIPLAHVDPEAKGDGDMFG 388

Query: 53  -----------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
                          L   L D  V+ +  N  ++  +F +     I       T +++ 
Sbjct: 389 ADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFAQH---KIHVHPIDDTMLISF 445

Query: 102 TNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                     + +     L       K   G                    ++    A  
Sbjct: 446 ALNAGIHGHGMDDLSERYLGHKPITFKDVAGTG---------------KAQKSFAQVALD 490

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207
              EY   D + T  L++ L P    E          R L  +   +   G ++D D++ 
Sbjct: 491 KATEYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLS 550

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263
           +L     Q    L+ +  +   G   +      L   LF    +     ++     T   
Sbjct: 551 RLSADFNQRMAALEAEAHEQA-GRSFNIGSPKQLGEILFDEMNLPGGKKTKTGAWVTDGD 609

Query: 264 ILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           +L   +         I++    S         L  A++   GR+  +    GA +TGR S
Sbjct: 610 VLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGA-QTGRLS 668

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA  G  LV AD 
Sbjct: 669 STDPNLQNIP------------------------VRTEEGRKIRQAFIAEEGNVLVSADY 704

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +A      +AF +G DI+  T ++ F  PI+ +    R   K +      
Sbjct: 705 SQIELRILAHMADIPALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAIN----- 759

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                     +  +   
Sbjct: 760 ---------FGIIYGISGF------------------------------GLGRQLGIPSG 780

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+ Q   +  E                                 + 
Sbjct: 781 EANQYIKTYFERFPGIRQYMDETKEFARATG--------------------------FVK 814

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               R++   D+K        A S   R+           +Q  + DI+   M    +  
Sbjct: 815 TAFGRKIHLPDIKSK----GPARSFAERQAINAP------IQGSAADIIKRAMIRMPEAL 864

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAE 666
                   ++L VHDE+V E P+     +  L    M     PS    +PL  E
Sbjct: 865 AEAGLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMAAADGPSLRLSVPLVVE 918


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/710 (15%), Positives = 199/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + ID ET S   +           A +   +   +           +            
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDL 400

Query: 51  --SAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               +P DL        L D+ ++ +  N  ++  +F +     I       T +++   
Sbjct: 401 VADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +   C   L       K   G  K+ I         +  Y    A+  ++ W
Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQAVCYAAEDADVTLRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF     R    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 518 RLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNIT- 271
              L+ +I  L  G   +      L   LF       G+   + + GT   +L       
Sbjct: 570 MAALEAEIHGLAGGPF-NVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDLAAEG 628

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 688 P------------------------VRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF  G DI+  T A+ FN P++ +    R   K +               
Sbjct: 724 HIADIPALKQAFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAIN-------------- 769

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     +                                    +     RR+  
Sbjct: 800 FERFPGIRAYMDETVAFAKAHG--------------------------FVQTLFGRRINT 833

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626
                + +          R            +Q  + D++   M    K        ++L
Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKALDGLPAKMLL 883

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +     V   +  +M     P+    +PL  +      +
Sbjct: 884 QVHDELLFEVDEAAADPVIARVREVMESASEPAVKLSVPLTVDAGRGANW 933


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            ID ET S               A +   + + +                       ++ 
Sbjct: 340 AIDTETTSLD----------VMNAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVL 389

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             L  +L +     V  N  ++  +     GI +       T + +          + + 
Sbjct: 390 DKLKPWLENPKKHKVGQNLKYDSHVLANY-GIRLQGI-VHDTLLESYVLESHRRHDMDSL 447

Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L++         GK                         A  +   Y   D + T 
Sbjct: 448 SERFLDYKPVSYTDICGKGASQIG---------------FDEIAIDVATHYAAEDADVTL 492

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + + P               E    ++ Q +   G  ID+D +      +  +   L
Sbjct: 493 QLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDSL 552

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKD 276
            E+          +      L   LF    + +       +  T + +L           
Sbjct: 553 QENAYVTAGQPF-NLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKLAEDFPLPK 611

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +IL+    S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 612 IILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 666

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G K++ AD + IE R++A ++ +
Sbjct: 667 --------------------IRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSDD 706

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +KAF +G+D++  T ++ F+    +V+ +Q                           
Sbjct: 707 ASLLKAFHDGQDVHRATASEIFDITPLEVTSDQ--------------------------- 739

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +  T  +     +  ++ 
Sbjct: 740 -----------------RRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFERYP 782

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +   +  +                                       RRL   ++  
Sbjct: 783 GVARYMDETRQLAREQGYVETVF--------------------------GRRLWLPEINS 816

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                  A     R            +Q  + DI+   M          K    +++ VH
Sbjct: 817 PNGPRRQAA---ERAAINAP------MQGTAADIIKLSMIAVQDWLEKEKLDSKLIMQVH 867

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V + P+     V   L  LM +       +PL AE      +
Sbjct: 868 DELVLDVPEKELVLVREKLPELMAQVAR--LKVPLIAEVGVGDNW 910


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/695 (15%), Positives = 186/695 (26%), Gaps = 148/695 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           +  D ET S  PL           A I   +++           T              +
Sbjct: 367 ICFDTETTSLDPLT----------AQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEV 416

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            +     L + T+  V  N  +++ +     GI +       T + +          +  
Sbjct: 417 LAKFKPLLENPTIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRGHGMDE 474

Query: 112 A-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK        G                A      +     +  
Sbjct: 475 LSARHLGIEPISFEQVAGKGAKQ---VGFNQVTIEVAAEYAAEDADITLQLHEALSPQV- 530

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +  K     S  E        TI   G  ID +++ +    I  +  +L+    +L   
Sbjct: 531 LQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELEAKAFELAGQ 590

Query: 231 IIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      L+  LF   GI         +  T + +L    +      ++L     + 
Sbjct: 591 PF-NLGSPKQLQEILFGKLGIKPIKKTPSGAPSTDEDVLQELALDYPLPKVLLEYRGLAK 649

Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L + ++   GR+        A  TGR +      QN+P              
Sbjct: 650 LKSTYTDKLPKMINAHTGRVHTNYNQAVA-ITGRLASSDPNLQNIP-------------- 694

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA  G  +V AD + IE R++A ++ +   ++AFAN 
Sbjct: 695 ----------VRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFANN 744

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F      V  EQ                                     
Sbjct: 745 EDIHRATAAEIFGVERSAVDNEQ------------------------------------- 767

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                    + +  +  L         A    +  +A +   + + A++ GV Q  +D  
Sbjct: 768 -------RRYAKVINFGLIYGMSAFGLAQNLNIERSAAQNYIERYFARYPGVRQYMQDTR 820

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E                                       RRL   ++            
Sbjct: 821 ELAKEKGYVETYF--------------------------GRRLWVPEINSANGMRRAGA- 853

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M    K          +++ VHDE+V E  D+
Sbjct: 854 --ERAAINAP------MQGTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADS 905

Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  LM         +PL AE      +
Sbjct: 906 ELELVKQKLPELMQSVAK--LDVPLLAEVGVGSNW 938


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 97/707 (13%), Positives = 192/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET +   +           A +   + A +                        +
Sbjct: 348 ISFDTETDALDAMR----------ARLVGISLAVEPGKAAYIPVGHDYPGAPPQLPMQQV 397

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L+D     +  +  ++  + ++  G+++       T + +           + 
Sbjct: 398 LDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVEVQGYH-DDTMLESFVLNSTATRHDMD 455

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L ++    +   GK                                Y   D + 
Sbjct: 456 SLALRYLGYNTIKFEDVAGKGAKQ---------------IPFSQVGIDEASRYAAEDADI 500

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             D E  L  +  +I   G RID   + +  + ++    
Sbjct: 501 TLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQSQDLSSRML 560

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
              +   +L  G   +      L+  LF    +            T +  L         
Sbjct: 561 AAQQKATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHEL 619

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L E V+ D GR+  +    GA  TGR S      QN+P  
Sbjct: 620 PRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA-ATGRLSSSDPNLQNIP-- 676

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +L+ AD + IE R++A ++
Sbjct: 677 ----------------------IRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLS 714

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF  G D++  T A+ F   +++V+  +R   K +                  
Sbjct: 715 EDPGLVGAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GL 760

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +     +     + ++
Sbjct: 761 MYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSR 790

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    + + +                                 +     RRL  +D+
Sbjct: 791 YPGVRDFMERMRQQARDQGY--------------------------VETLFGRRLYLNDI 824

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                 L        R            +Q  + DI+   M +  +          ++L 
Sbjct: 825 HARNQGLRAGA---ERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQ 875

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V ET  +    +   +   M++       +PL  +      +
Sbjct: 876 VHDELVFETESSFVEELRLQVVERMSQAAK--LRVPLVVDTGIGNNW 920


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/711 (15%), Positives = 198/711 (27%), Gaps = 174/711 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
               D ET S   +          +A +   + A                          
Sbjct: 341 YFAFDTETTSLNYM----------EAELVGVSLAMAPGEAVYIPVGHDYMEAPDQVGRDW 390

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSL 109
           +   L   L  E    V  N  ++  + ++   I +       T + +      G    +
Sbjct: 391 LLEQLKPLLEAEKPQKVGQNLKYDSHILRRYK-IRLAGI-LNDTMLASYVFNSVGSRHDM 448

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  LN      +   GK                      +  A +  G Y   D +
Sbjct: 449 DTLSLHYLNHKTISFEDIAGKGAKQL---------------TFNQIALEQAGPYAAEDAD 493

Query: 169 ATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            T  L   L                  E  L  +   +   G RID +L+ K  + IA++
Sbjct: 494 ITYRLHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEK 553

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQ 272
              L++   ++      +      L+   F    + +       +  T + +L       
Sbjct: 554 LDALEKKAFEIAGEEF-NLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEEVLHELAHDY 612

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              D+IL     S       + L + ++ D GR+  + Q    + TGR S      QN+P
Sbjct: 613 PLPDVILQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAV-TATGRLSSTDPNLQNIP 671

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           VR   I   G K+V  D + IE R++A 
Sbjct: 672 ------------------------IRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAH 707

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ ++  +KAFA G DI+  T A+ F    D+VS +QR   K +                
Sbjct: 708 LSQDESLLKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVN--------------F 753

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 754 GLIYGMS------------------------------AFGLARQLGIARHEAQHYMDKYF 783

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  GVL+  +D  +                                       RRL   
Sbjct: 784 ERFPGVLRYMEDTRKQAKEQGYVKTLF--------------------------GRRLPLP 817

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--------NGYD 623
           D+K              R            +Q  + DI+ + M             +   
Sbjct: 818 DIKASNGARR---KGAERAAINAP------MQGTAADIIKKAMLKVADWIDSNNCQDDVR 868

Query: 624 IVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +++ VHDE+V E  ++     +  L  +M K  S    +PL AE  +   +
Sbjct: 869 MLMQVHDELVFEIKESKLTDYIEQLTEVMEKAAS--LDVPLIAEAGKGNNW 917


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 202/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +                 T +            
Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGICLCVVPGQACYVPLTHKAGNSDDLFGSDD 398

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L D+ ++ +  N  ++  +F +  GIDI       T +L+  
Sbjct: 399 LAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDITP--IDDTMLLSYA 455

Query: 103 NG---LPSSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L+      K   G  K+ I        D+ PY    A+  ++ 
Sbjct: 456 LHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDATPYAAEDADITLRL 515

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ F     +    T  +++ L      ER L  +   +   G ++D D + ++    +Q
Sbjct: 516 WQQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQNGIKVDRDTLSRMSNAFSQ 567

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF    +      +     T   IL      
Sbjct: 568 KMAALEAEIHELA-GESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYATGADILEDLATE 626

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 627 HELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  G  L+  D + IE R+LA
Sbjct: 686 P------------------------VRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILA 721

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +AG D   +AFA+G DI+  T ++ F+ P+++++ E R   K +               
Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAIN-------------- 767

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 768 FGVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRY 797

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+ Q   D                                    +     R++  
Sbjct: 798 FERFPGIRQYMDDTVNFAKDHGY--------------------------VQTLFGRKIHT 831

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + +      S   R            +Q  + D++   M             ++L
Sbjct: 832 P----EIAAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPDAIAHLPARMLL 881

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
            VHDE++ E P+      +     +M      A    + L  +    + +
Sbjct: 882 QVHDELLFEVPEDHVDETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 203/709 (28%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWV 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 411 IAQLKPLLEDENKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    Q   +Y   D + 
Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 514 TLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+    PI++VS EQR   K +                  
Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL     
Sbjct: 804 YPGVMQYMEDTRSRAAEQGYVETIF--------------------------GRRLHLP-- 835

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 836 --EITSRNGMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL A+      +
Sbjct: 888 MQVHDELVFEVEESSLSEIEIKVQELMESAAELA--VPLVADAGHGDNW 934


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/709 (14%), Positives = 198/709 (27%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET              A++A +   ++A                         A+
Sbjct: 336 FAFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAV 385

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L D     V  N+ ++  +    +  I++    +  T + +           +
Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTATRHDM 444

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+ +    +   GK                      +       G Y   D +
Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQINLDKAGPYAAEDAD 489

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L               D E  L  +   I  +G  +D  L+      +  + 
Sbjct: 490 ITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGVKM 549

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
            +L++   +L      +      L   L+   G+ ++  +      T +++L    +   
Sbjct: 550 GELEQRAYELAGEEF-NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELALLGY 608

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G KL+ AD + IE R++A 
Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF N  D++  T A+ F   +  V+ +QR   K +                
Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAIN--------------F 749

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D+      L        R            +Q  + DI+   M N             ++
Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVI 864

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +   M++       +PL  E      +
Sbjct: 865 LQVHDELVLEVREDLVQQVKDEIRQHMSQAAQ--LDVPLLVEAGIGANW 911


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 198/709 (27%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S            A++A +   ++A +                       A+
Sbjct: 336 FAFDTETTSLD----------AQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAV 385

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109
              L   L+D     V  N+ ++  +    +  I +    +  T + +           +
Sbjct: 386 LLALKPLLQDPAKEKVGQNAKYDINILANGSPAIQMQGVAY-DTMLESYVLNSTATRHDM 444

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+ +    +   GK                      +       G Y   D +
Sbjct: 445 DSLAQKYLDHATIAFEDIAGKGAKQL---------------TFNQIHLDKAGPYAAEDAD 489

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L               D E  L  +   I  +G  +D  L+      +  + 
Sbjct: 490 ITLRLHQALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKM 549

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272
             L+    +L      +      L   L+   G+ ++  +      T +++L        
Sbjct: 550 ADLERRAYELAGEEF-NLGSPKQLGSILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGY 608

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++++   + S       + L   ++   GR+  + Q   A  TGR S      QN+P
Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G KL+ AD + IE R++A 
Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF N  D++  T A+ F   ++ V+ +QR   K +                
Sbjct: 704 LAKDEGLLHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINF-------------- 749

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A +  +     +     + 
Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GVL   +      A                              +     RRL   
Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D+      L        R            +Q  + DI+   M N             ++
Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVI 864

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  +     V   +   M+K       +PL  E      +
Sbjct: 865 LQVHDELVLEVREDLVDQVKDEIRGQMSKAAQ--LDVPLLVEVGVGSNW 911


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 191/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A +   + +                          + 
Sbjct: 339 SLDTETTSLDSMT----------ARLVGISLSVKPGFAAYIPLAHHPIEVAKQLPLDHVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             L  +L +     V  N  ++  +F     I +       T + +          + + 
Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHIFANYH-IHLQGIA-HDTLLESYVLESHRRHDMDSL 446

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
              L ++     +   GK                                Y   D + T 
Sbjct: 447 SERLLDYKPISYEEICGKGASQIG---------------FDQIELDCATRYAAEDADITF 491

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + + P  +            E  + L+ Q +   G  ID DL+L     +A +  +L
Sbjct: 492 QLHENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDEL 551

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           ++           +      L   LF   G+         +  T + +L    +      
Sbjct: 552 EKKAY-SVAEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEKLALDYPLPK 610

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +IL+    +       + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 611 IILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 665

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  +V AD + IE R++A ++ +
Sbjct: 666 --------------------VKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDD 705

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +KAF  G+D++  T ++ F+    +V+ EQ                           
Sbjct: 706 PGLLKAFREGQDVHKATASEIFDIAPLEVTPEQ--------------------------- 738

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +  T  +     +  ++ 
Sbjct: 739 -----------------RRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFRRYP 781

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +    + +                                       RRL   ++  
Sbjct: 782 GVAEYMDAIRQTAREQGYVETVF--------------------------GRRLWLPEINS 815

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                  A     R            +Q  + DI+   M          +    +++ VH
Sbjct: 816 PNGPRRQAA---ERAAINAP------MQGTAADIIKLSMIAVNDWIENEQLESKLIMQVH 866

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  LM +  S    +PL A+    K +
Sbjct: 867 DELVLEVPDKELERVRKRLPELMGQVAS--LKVPLIADVGFGKNW 909


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 201/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 360 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 409

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+T   V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 410 LEQLKPILEDDTQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 467

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 468 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 512

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL+   +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 513 TLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLD 572

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 573 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 631

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LI+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 632 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 688

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 689 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 726

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   ++AF  G+DI+  T A+     ID+V+ EQR   K +                  
Sbjct: 727 GDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNF--------------GL 772

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 773 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 802

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 803 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 836

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M    +           +++
Sbjct: 837 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 887

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL AE      +
Sbjct: 888 QVHDELVFEVQESALAEIESKVQQLMESAAD--LEVPLVAEAGHGDNW 933


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 117/712 (16%), Positives = 210/712 (29%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET    P+          QA I   + A           + +            
Sbjct: 393 FVAVDTETTGLDPM----------QADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLL 442

Query: 51  -SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
              +P     + +   +    V+ +  N  ++ ++ K+ LGI++    +  T +++    
Sbjct: 443 PDQIPIPDAVAAIKPLMEHPGVLKIGQNLKYDWLILKR-LGIEL--GPYDDTMLVSYVLD 499

Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               P  +    +  L  +    +   GK                         A     
Sbjct: 500 AGASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQ---------------ICFDRAAIDKAT 544

Query: 161 EYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +Y   D + T  L++ L P    E          R L  +   + +RG  ID  ++ +L 
Sbjct: 545 DYAAEDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLS 604

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILS 266
              AQ   +L+ +I ++  G   +      L   LF       G      +  T   +L 
Sbjct: 605 GEFAQGMGRLEAEISEMA-GETFNPGSPKQLGDILFGKMQIPGGRKTPTGAWSTGADVLE 663

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                       IL+            + L   V+   GR+  +     A+ TGR S   
Sbjct: 664 ELAEQGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALA-ATTTGRLSSSE 722

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   IA+ G KLV AD + I
Sbjct: 723 PNLQNIP------------------------VRTEEGRKIRKAFIAAPGHKLVSADYSQI 758

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA IA      +AF +G DI+  T ++ F  P++ +  E R   K +   + Y   
Sbjct: 759 ELRLLAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG-- 816

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + +          FE +    ++    ++   E    + L G  C 
Sbjct: 817 ---ISAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCH 873

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
               +  AK+  +                                               
Sbjct: 874 YPDIS--AKNPSIRAFN---ERAAINA--------------------------------- 895

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
             RL  S        +    + L +               +S                 +
Sbjct: 896 --RLQGSAADIIRRAMARMDAALEKA-------------GLSA---------------RM 925

Query: 625 VLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ E PD     ++  +   M     P+ A  +PLK +   A+ +
Sbjct: 926 LLQVHDELIFEVPDDEIAATIPVVRETMELAPFPAVALKVPLKVDARAAENW 977


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET +   +           A +   + A +                        +
Sbjct: 348 ISFDTETDALDAMR----------ARLVGVSLAVEPGRAAYIPVGHDYPGAPAQLPMQQV 397

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L+D     +  +  ++  + ++  G+D+       T + +           + 
Sbjct: 398 LDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVDVQGYH-DDTMLESFVLNSTATRHDMD 455

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L +S    +   GK                + +R            Y   D + 
Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ---IPFSQVGIDEASR------------YAAEDADI 500

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             D E  L  +  TI   G RID D + +  + ++    
Sbjct: 501 TLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQSQDLSSRML 560

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
              +   +L  G   +      L+  LF    +            T +  L         
Sbjct: 561 AAQQKATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIAEQHEL 619

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L E V+   GR+  +    GA  TGR S      QN+P  
Sbjct: 620 PRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGA-ATGRLSSSDPNLQNIP-- 676

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G +L+ AD + IE R++A ++
Sbjct: 677 ----------------------IRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHLS 714

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AF  G D++  T A+ F   +++V+  +R   K +                  
Sbjct: 715 EDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GL 760

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +     +     + ++
Sbjct: 761 MYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSR 790

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    + + +                                 +     RRL  +D+
Sbjct: 791 YPGVRDFMERMRQQARDQGY--------------------------VETLFGRRLYLNDI 824

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                 L        R            +Q  + DI+   M +  +          ++L 
Sbjct: 825 HARNQGLRAGA---ERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQ 875

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V ET  +    +   +   M++       +PL  +      +
Sbjct: 876 VHDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGIGSNW 920


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 186/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   ++A +           +            + 
Sbjct: 353 SFDTETTSLDPMR----------ARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVL 402

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L       V  +  ++  +     GI +       T + +       P  + N 
Sbjct: 403 ARLKPWLESPAHKKVGQHLKYDAQVLASH-GITLAGIE-HDTLLESYVLESHRPHDMDNL 460

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         +  +  EY   D + T 
Sbjct: 461 ATRHLGVKTIKYEDVAGKG---------------AAQIGFDEVSVDVATEYSAEDADITL 505

Query: 172 ELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P               E     + Q I   G  ID D ++     +     +L
Sbjct: 506 RLHQVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLEL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
             +   L  G   +      +    F    +         +  T + +L           
Sbjct: 566 QAEAYALAGGEF-NLNSPKQIGEIFFQQLQLPVVKKTPSGAPSTDEDVLQKLAEDYPLPK 624

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L+  A +       + L + ++ D GR+        A  TGR +      QN+P    
Sbjct: 625 VLLDYRALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 679

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  +V AD + IE R++A I+G+
Sbjct: 680 --------------------VRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGD 719

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AF +GED++  T ++ F     +V+ EQR I KV+   L Y              
Sbjct: 720 ASLMAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMS-----AFGLAS 774

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +         + G    L          
Sbjct: 775 NLGIARDAAKLYIDRYFARYPGVARYMDETRMEAKSCGFVQTVFGRRLWL---------P 825

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 826 EINGGNGPRRQAAERAAINAPMQGT----------------------------------- 850

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                               KL+   VQ    D +        +    +++ VHDE+V E
Sbjct: 851 ---------------AADLIKLSMITVQ----DWIERA-----RVKSRLIMQVHDELVLE 886

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD     +   +  LM         +PL AE      +
Sbjct: 887 VPDDELEIIRAKVPELMCSVAQ--LNVPLVAELGTGANW 923


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/715 (15%), Positives = 213/715 (29%), Gaps = 179/715 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-------VKLWDRTEQ------ 50
             ID ET S            A +A I   ++A+ ++              T        
Sbjct: 355 FAIDTETTSLN----------AMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPE 404

Query: 51  ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL- 105
                 + + L   L +  +  V  N  ++  +FK   GI++    +  T + +      
Sbjct: 405 QLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAY-DTMLESYCFNSV 462

Query: 106 --PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               ++ +     LN S    K   G                    +  +    +    Y
Sbjct: 463 ATRHNMDDLALTYLNHSTIHFKDIAGTGKKQ---------------KTFNQIELETASPY 507

Query: 163 CKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              D + T +L + L+P             + E  L  +   +   G  ID  ++     
Sbjct: 508 AAEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSY 567

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSH 267
            + Q+  +L++    +      +   +  L+  LF    + +          T + +L  
Sbjct: 568 ELGQKLTELEQKAHLIAGTPF-NLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPVLVQ 626

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
                    +LIL   + +       ++L + ++   GR+  + Q   AS TGR S    
Sbjct: 627 LAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVAS-TGRLSSTEP 685

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   IA  G +L+ +D + IE
Sbjct: 686 NLQNIP------------------------IRSAEGRRIRQAFIAQPGYRLMASDYSQIE 721

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R++A ++G+   +KAFA G+DI+  T A+ FN P+++V+ EQR   K +          
Sbjct: 722 LRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNF-------- 773

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +     + 
Sbjct: 774 ------GLIYGMS------------------------------AFGLAKQLNISRGLAQE 797

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               + A++ GV    +   E           +                           
Sbjct: 798 YINLYFARYPGVANYMESTKENAKQTGYVETLM--------------------------G 831

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RRL   D+      L        R            +Q  + DI+   M    +      
Sbjct: 832 RRLYLPDINAKNGQLRQYA---ERTAINAP------MQGTAADIIKTAMVKMQQWLDQTP 882

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               +++ VHDE+V E  +         + ++M         +PL  E  +   +
Sbjct: 883 CDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAALK--LDVPLIVEIGDGLNW 935


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 345/713 (48%), Gaps = 61/713 (8%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L+ D+ET SP P+   GV AYAEQA + L AYA  D PV++WD T  + MP +L   L
Sbjct: 9   SILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAAL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+   HNS F+R +  +  GI+IP +RW  +   A  + LP +L   C  L     
Sbjct: 68  HNPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVE 126

Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--I 178
             K ++GK L+A FCK           TR  H   W  F +Y +RDV A R++ KRL   
Sbjct: 127 QAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSH 186

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             +  E  LW LDQTINDRG  +D DL       + + ++ L E    LT G+++++ Q 
Sbjct: 187 NYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQR 246

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            AL  +L    G+ L DM + T++  L    + +  ++L+  R  +S ++  K   L   
Sbjct: 247 DALLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIAD 355
            S DGRLRGTLQF GASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDD 366

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI------- 408
            + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K++AF + +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVM 435
                                            Y   YA +F      V+KEQR IGKV 
Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
           ELALGY GG   F   A+   +DL+  ++                   W +  +      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQQA--VEALQWTKANHRPTFGL 544

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
                 AC++ K+AWR  H  +   W+ L       +    +           + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSR 599

Query: 556 RDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDI 609
             + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+
Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662
           L   M      GY IVLTVHDEI++E  D   F+   L +LM   P   +G P
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 203/659 (30%), Positives = 300/659 (45%), Gaps = 74/659 (11%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFKKTLGI-DIPS 90
            AYA  DE   LW       +P  +     + +     A NS FE  ++       + P 
Sbjct: 1   MAYAIGDEDPILW--LPGDDLPEFV----TNPSEFTIYAWNSFFEWCIWHHVQEWSNAPI 54

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             W  T+ LA    +P +L     AL   +   K + GK LI R  K +      D    
Sbjct: 55  FLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGKRIQDA--- 111

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                 + F EYC++DV   R +  RL PLS  ER +W LDQTIN RG  ID   V    
Sbjct: 112 ---DLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENAL 168

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
            +I Q  +KL++++ +LT   + +  Q   +  Y+    G  L+   +  L+++L    +
Sbjct: 169 LIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLEDETL 228

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +A+ LI  R     ++  K   L + V+ D R  G L ++GA+ TGRWSG  FQPQNL
Sbjct: 229 PPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQNL 287

Query: 331 PRQERSEEILTQTIQALNRGE----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PR    +      +      E       DP+   S  +R  I A  GK+L+V D + IEA
Sbjct: 288 PRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIEA 347

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVL W+AG++  +     G +IY  T ++ +  P +KV++EQR IGKV  LALGYQGGAK
Sbjct: 348 RVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGGAK 407

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            F+ MA   G+++                                            + +
Sbjct: 408 AFQGMAEVYGVEIDT---------------------------------------DLADEI 428

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           K  WR  ++ +++ W  + +     V   G         +  +  R     +   LPS R
Sbjct: 429 KVDWRVANRKIVKFWWGVEKAALNAVTHPGKT-----FEIRAIKFRFTDNYLFCRLPSGR 483

Query: 567 RLVYSDVKGDCSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
            L Y   K                N+ T +  R+ TYGGKL ENI QA++RD++ E M  
Sbjct: 484 LLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAMLR 543

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               GY++VL+VHDE+++E  +  + SV     LM + P WAKGLP+ +EG+E  RYRK
Sbjct: 544 VENAGYEVVLSVHDELIAEA-NDDFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYRK 601


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 195/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
             ID+ET S   +           A I   + A +                     +  +
Sbjct: 327 FSIDLETNSLNYM----------DAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRV 376

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L  E    +  N  ++  +  +  GI++    +  + + +           + 
Sbjct: 377 LDALRPLLEAEQPEKMGQNLKYDMSVLARY-GIELRGVAY-DSMLESYVLDSTATRHDMD 434

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                         +  G Y   D + 
Sbjct: 435 SLASKYLGVEVTSYEQLCGKGVRQ---------------VPFAEIDVERAGHYAAEDADI 479

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              L + L P    E             L  +   +   G R+D DL+ +  E +A    
Sbjct: 480 ALRLHQLLYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMA 539

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QL 273
           ++++   +   G   +      ++   F   G+            T +S+L   +     
Sbjct: 540 EVEQRAHEEA-GEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHE 598

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL     S       + L + +  D GR+  +     A  TGR S      QN+P 
Sbjct: 599 LPRLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP- 656

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +AS G +L+ AD + +E R++A +
Sbjct: 657 -----------------------VRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHL 693

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G++   +AF  GEDI+  T A+ F    D+V+ EQR   K +                 
Sbjct: 694 SGDEGLRRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINF--------------G 737

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +  +     +     +  
Sbjct: 738 LIYGMS------------------------------AWGLGRQLGIPRDEAQTYIDRYFE 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV        E                                       RRL   +
Sbjct: 768 RYPGVRAFMDRAREQAREQGYVETVF--------------------------GRRLHVPE 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           +               R            +Q  + D++   M +             +V+
Sbjct: 802 IHSRNRQRREYA---ERTAINAP------MQGTAADVIKRAMIDVDALLNERFPESRLVM 852

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E P+    +V   +  LM  +      +PL+ E      +
Sbjct: 853 QVHDELVLEVPEAQATAVGDEVRRLMEGSDRGMVSVPLEVELGVGDDW 900


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/711 (16%), Positives = 202/711 (28%), Gaps = 165/711 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
            +  D ET S            A QA +   + +                          
Sbjct: 204 YVAFDTETTSLN----------AMQAELVGISLSTSTGKACYIPLAHIDGEGDLLGGGAL 253

Query: 50  -QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            +  +P     + L   L D  V+ +A N  ++ ++        +    +  T +L+ T 
Sbjct: 254 IEGQIPLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHY---GVNVTSYDDTMLLSYTV 310

Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L       K   G  K++I         +  Y    A+  ++ W
Sbjct: 311 DAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVPLDKATAYAAEDADVTLRLW 370

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q+       D  AT  +++ L      ER +  +   +  RG  +D  ++ +L    AQ 
Sbjct: 371 QVLKPRLASDRMAT--VYETL------ERPMVPVLARMEQRGIAVDRQMLSRLSGDFAQG 422

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271
              L+ +I +L  G   +      L   LF   G+     ++     T  S+L       
Sbjct: 423 MAGLEAEIHELA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLEDLAAEG 481

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 I+     S       + L   +  D +   T     A+ TGR S      QN+P
Sbjct: 482 HTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEPNLQNIP 541

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                       A   +R   +A  G KL+ AD + IE RVLA 
Sbjct: 542 ------------------------VRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAH 577

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A      KAF  G DI+  T ++ F TPI+ +    R   K +                
Sbjct: 578 MADIPQLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINF-------------- 623

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+     +                                  +         K + 
Sbjct: 624 GIIYGISAFGLAAQ------------------------------LGISRGEASDYIKTYF 653

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +  +   +                                       R+  Y 
Sbjct: 654 ERFPGIKEYMEATKKQVHATGYVTTIF--------------------------GRKAHYP 687

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625
           DV      +            Y        +Q  + DIL   M          K    ++
Sbjct: 688 DVNTKNPNMRNF---------YERAAINAPIQGSAADILRRAMVRMEDRLLSSKLDAQML 738

Query: 626 LTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           L VHDE++ E P+     ++  +  +M     P     +PL+ +   A  +
Sbjct: 739 LQVHDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDARAADNW 789


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/612 (29%), Positives = 271/612 (44%), Gaps = 78/612 (12%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSID 141
           G+ +    W CT + + T GLP SL++    L       K+ EGK LI  FC     +  
Sbjct: 5   GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGL--DKQKLTEGKNLIKYFCLPCNPTKV 62

Query: 142 SPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRG 198
           +      +  H  + W+LF  Y KRDVE    + ++L   P+ D     + LDQTINDRG
Sbjct: 63  NGGRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRG 122

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ID   V    +L  + +  L  ++  +T     +      +R +L    G+++  + +
Sbjct: 123 IEIDSLFVESAIKLDQEVKTHLMSELKHVTGLE--NPNSVLQMRSWLKEH-GLEMESLGK 179

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
             +   L      +   +++  R   + S++ K   +  A   D R RG  +FYGA+RTG
Sbjct: 180 KEVAKELKTVG--KELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTG 237

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGK 374
           R++G + Q QNLP+    +    +++      E       D     S  +R+  I   G 
Sbjct: 238 RFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGF 297

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIG 432
           K +VAD + IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K   +   R  G
Sbjct: 298 KFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKG 357

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K+ ELALGY G     K M                                         
Sbjct: 358 KIAELALGYGGSVGALKAMG---------------------------------------- 377

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A+   L     + +  AWR  +  V  LW D+       V E  S+          +V  
Sbjct: 378 ALDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRT------HNIVFT 431

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQ 603
                + I LPS R L Y   + + +              T +  R  +YG K  ENI Q
Sbjct: 432 YKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQ 491

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663
           AI+RDIL   M+   +  Y IV  VHDE + ET      SV ++C LM + P WA+GL L
Sbjct: 492 AIARDILLYAMQTLKE--YRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPWAEGLVL 547

Query: 664 KAEGYEAKRYRK 675
           +A+GYE + Y+K
Sbjct: 548 RADGYECEFYKK 559


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/709 (14%), Positives = 205/709 (28%), Gaps = 165/709 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
           ++ +D ET     +             +   +   +           +            
Sbjct: 351 RVAVDTETTGLDEMV----------VDLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGL 400

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                      + L   L D  V+ +  N  ++  +  +     +       T +++   
Sbjct: 401 SEGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRY---GVDVAPIDDTMLMSYAL 457

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+ +    K  +  GK+ +        D+ PY    A+  ++ W
Sbjct: 458 HAGLHGHGMDTLSERYLDHTPIPIKPLLGSGKSAVTFDRVPIEDAVPYAAEDADITLRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q F     ++   T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 518 QTFKPQLHQERVTT--VYETL------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L+ +I +L  G   +      L   LF   G++     +     T   IL       
Sbjct: 570 MAGLEAEIHELA-GETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYSTGADILEDLATEH 628

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +L+    S       + L + ++ D GR+  +    GAS TGR +      QN+P
Sbjct: 629 DLPRRVLDWRQLSKLKSTYTDALQDHINKDTGRVHTSYAQTGAS-TGRMASTDPNLQNIP 687

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G  L+  D + IE R+LA 
Sbjct: 688 ------------------------VRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAH 723

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG +   +AFA G+DI+  T ++ F  P+++++ E R   K +                
Sbjct: 724 MAGIETLQQAFAEGQDIHALTASEMFGVPLEEMTPEIRRQAKAIN--------------F 769

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 770 GVIYGISGF------------------------------GLARNLRIPRKDAQGFIDRYF 799

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +      E                                 +     R++   
Sbjct: 800 ERFPGIRKYMDSTVEFAKEHGY--------------------------VQTLFGRKIHT- 832

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + +          R            +Q  + D++   M             ++L 
Sbjct: 833 ---AEINAKGPKAGFAKRAAINAP------IQGTAADVIRRAMIRMPEAIAHLPARMLLQ 883

Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
           VHDE++ E P+     ++     +M      A    + L  +    K +
Sbjct: 884 VHDELLFEVPEAAVEDTIAAAREVMENAADPAVHLDVKLVVDAGRGKNW 932


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/706 (14%), Positives = 200/706 (28%), Gaps = 169/706 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
            +   D ET S         +  A    I   + A+D +                     
Sbjct: 347 KRFAFDTETTSLD-------YRVA---QIVGFSVAFDAQDAYYVPLAHDYENAPAQLDRE 396

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            + + +   L DE+V  + H+  ++  + +   GI++    +  T + +           
Sbjct: 397 QILAQIKPILEDESVQKIGHHLKYDAHVLENH-GIELKGW-YFDTMLASYVLNAVATRHG 454

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L+      +   GK                   +  +    +    Y   D 
Sbjct: 455 MDDVSRLYLSHLTTTFEQVAGKGAKQ---------------KTFNQIEIETAAHYAAEDA 499

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
             T  LF+ L                 E  +  +   + + G  +DL  + +L    A  
Sbjct: 500 HVTYRLFEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANT 559

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L+  I +L  G   +      +   LF   G+     +      T +S+L   +   
Sbjct: 560 MANLESQITELA-GQSFNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEKIDHP- 617

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +LIL+    S       + L +  +SD     T      + TGR S      QN+P 
Sbjct: 618 -ITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQNIP- 675

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G+ L+ AD + IE R++A  
Sbjct: 676 -----------------------VREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHF 712

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  + AF +G+D++  T A+     ++ V+ +QR   K +                 
Sbjct: 713 SQDEALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVNF--------------G 758

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+     +                               +              +  
Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFSREESRGYIAKYFQ 788

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +   +                                 +     RRL   D
Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628
           +      +  A     R             Q  + DI+   M        K+   ++L V
Sbjct: 823 IMASNKMIKQAA---ERAAINAPL------QGSAADIIKMAMIAVDQMLPKDQTKMLLQV 873

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  ++    +   L  +M         +PL  E  + + +
Sbjct: 874 HDELVFEVDESIADELASKLADVMQSVLQ--ISVPLLVEVGKGRNW 917


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/725 (14%), Positives = 203/725 (28%), Gaps = 183/725 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49
             + +D ET S   +           A +   + A                         
Sbjct: 352 KCIALDTETDSLDSMR----------ANLVGISLALASGEACYIPLAHKTLVTTSAGQGD 401

Query: 50  ---------QSAM----------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
                       +           + L   L +  +  +  N  ++  +F    GI++  
Sbjct: 402 LFSSEMETVGYELAKNQLNLTACLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460

Query: 91  KRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +  T + + T       ++ +     L       +   GK                  
Sbjct: 461 VAF-DTMLESYTLNSTGRHNMDDLSDRYLGHKTIEFEAIAGKGKNQL------------- 506

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIND 196
                        EY   D + T +L + L               + E  L  +   I  
Sbjct: 507 --TFDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEIELPLVSVLSRIER 564

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253
            G  ID   + +    I +   +L++++     G + +   T  L+  LF   G+ +   
Sbjct: 565 NGVLIDPAKLKQQSSEIERRLAELEQEVH-SEAGSVFNLASTKQLQEILFEKLGLPILKK 623

Query: 254 -VDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQ 310
               +  T + +L    +       L++     S       + L   ++   GR+  +  
Sbjct: 624 TPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYH 683

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   IA
Sbjct: 684 QAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFIA 718

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G K+V AD + IE R++A +A ++  +KAFA G+DI+ +T ++ F  P+D+V+ EQR 
Sbjct: 719 RKGYKIVAADYSQIELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRR 778

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   L Y               L + +        + F  +         ++ +  
Sbjct: 779 NAKAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAA 833

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRL 549
           E    + L+G    L           +        +      +      +A  +  +  +
Sbjct: 834 EKGYVETLLGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMI 884

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
            + R                                               I+Q      
Sbjct: 885 GIDR-----------------------------------------------IIQ------ 891

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGY 668
                     +   +++ VHDE+V E  +         + + M K       +PL AE  
Sbjct: 892 --------HSDEIKMIMQVHDELVFEVREDKVEHYSALIKAEMEKAIQ--LSVPLIAEVG 941

Query: 669 EAKRY 673
               +
Sbjct: 942 IGDNW 946


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 188/701 (26%), Gaps = 155/701 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
           S   ID+ET S  P           +A I   ++++ D                      
Sbjct: 313 SIFAIDLETTSLNPF----------EAEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLA 362

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            +   L   L D  +  +  N  ++  + ++  GI++    W  T + +           
Sbjct: 363 HVLQALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEMEGI-WCDTMLASYLLNPNRSSHG 420

Query: 109 LKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           L       L+          G  K            +  Y C  A+              
Sbjct: 421 LNALAVELLDHKMISYADVAGSGKDQKNFAQVEVEKASIYSCEDADATWLLHKLFLPQIE 480

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +    R LF       + E  L  +   +   G ++DL L+ KL      +  +L+ +I 
Sbjct: 481 ESGMERLLF-------ELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELEREIF 533

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILN 280
           +   G   +      L   LF    +     ++      T    L           LIL 
Sbjct: 534 QCA-GTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAEHEIGRLILQ 592

Query: 281 RLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             + S       + L + V S  GR+  +      + TGR S      QN+P        
Sbjct: 593 YRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAV-TNTGRLSSSEPNLQNIP-------- 643

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA  G  ++ AD + IE RVLA ++ +    
Sbjct: 644 ----------------IRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFC 687

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AFA  EDI+  T A+ F      V+ E R   K +                    G   
Sbjct: 688 DAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTIN--------------FGVIYGQGP 733

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A +  +     +     +  +H G   
Sbjct: 734 F------------------------------SLAKELGVSTKVAKEFIDNYFDRHAGARV 763

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                             +                           RRL   D+      
Sbjct: 764 FLDGCVREAEAKGHVTTIL--------------------------GRRLPIPDINSTNGN 797

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633
           + +   +               +Q  + DI+ + M               +++ VHDE+V
Sbjct: 798 IRSFAQRN---------AINYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELV 848

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P     ++  L    M    +    +PLK +      +
Sbjct: 849 FEVPLEEKLTMEKLVCHEMENALT--LRVPLKVDVNFGSNW 887


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/714 (14%), Positives = 211/714 (29%), Gaps = 168/714 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET     +           A +   + A +                      S  
Sbjct: 356 VAVDTETTGLDEMK----------ADLVGISLAVEPGAACYIPLAHKAEAGSDDLFGSDT 405

Query: 54  PSD-----------LLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSV 98
            ++           L   L D  ++ +  N  ++  +F++  G      I    +  T +
Sbjct: 406 LAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTML 465

Query: 99  LARTNGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN- 151
           L+           +       L+ S    K  +  GK+ I        D+  Y    A+ 
Sbjct: 466 LSYALFAGQHGHGMDTLSERYLSHSPIPIKSLLGTGKSAITFDRVPIADAVAYAAEDADI 525

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            ++ W+LF     +    T  +++ L      ER L  +   +   G ++D D + ++  
Sbjct: 526 TLRLWKLFKPQLHQQRVTT--VYETL------ERPLSPVLAKMEMEGVKVDRDTLSRMSN 577

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267
             AQ+   L+ +I +L  G   +      L   LF   G++     +     T   IL  
Sbjct: 578 AFAQKMAALESEIHELA-GETFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADILED 636

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                     +L+    S       + L + +    GR+  +    GA+ TGR +     
Sbjct: 637 LATEHDLPARVLDWRQLSKLKSTYTDALQDHIHPETGRVHTSYVQTGAN-TGRLASTDPN 695

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +A  G  L+  D + IE 
Sbjct: 696 LQNIP------------------------IRSEEGRRIREAFVAEEGNVLLALDYSQIEL 731

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA +AG D   +AFA G+DI+  T ++ FN P+ +++ + R   K +           
Sbjct: 732 RILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINF--------- 782

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A   ++     +  
Sbjct: 783 -----GVIYGISGF------------------------------GLARNLRIPRAEAQGF 807

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +  G+ +   D                                    +     R
Sbjct: 808 IDRYFERFPGIRRYMDDTVAFAKEHGY--------------------------VQTLFGR 841

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++       + +          R            +Q  + D++   M            
Sbjct: 842 KIHTP----EIAAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPEAIAHLPA 891

Query: 623 DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
            ++L VHDE++ E P++    ++     +M      A    + L A+  + K +
Sbjct: 892 RMLLQVHDELLFEVPESAAEDTIEAARKVMESAADPAVHLDVKLVADAGQGKNW 945


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/708 (14%), Positives = 202/708 (28%), Gaps = 174/708 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S   +           A +   +++ ++                       + 
Sbjct: 358 AFDTETDSLDYMV----------ANLIGLSFSVEEGEAAYVPVAHDYLDAPEQLDRDWVL 407

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
           + L  YL DET   V  N  ++  +  +   I++   ++  T + +          ++ +
Sbjct: 408 AQLKPYLEDETKAKVGQNLKYDASVLARY-DIEMKGIKF-DTMLESYVYNSVAGKHNMDS 465

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  +    +   GK                      +  A +    Y   D + T
Sbjct: 466 LALRYLQHNTISFEEIAGKGKKQL---------------TFNQIALEEAAPYAAEDADIT 510

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L   L               D E  L  +   +  +G  ID  L+      I Q   +
Sbjct: 511 LRLHNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYIDDMLLSAQSLEIGQRLDE 570

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L+    ++      +      L+  LF    +         +  T + +L    +     
Sbjct: 571 LETASFEVAGQEF-NMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALEYELP 629

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            LIL     +       + L + ++   GR+  +      + TGR S      QN+P   
Sbjct: 630 KLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP--- 685

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A +G K++  D + IE R++A ++ 
Sbjct: 686 ---------------------IRNKEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQ 724

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++AF+ G+DI+  T A+     I++V+ E R   K +                   
Sbjct: 725 DRALLEAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLI 770

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +     +  ++
Sbjct: 771 YGMS------------------------------AFGLAKQIGISRGEAQDYMNVYFERY 800

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV+Q  ++                                    +     RRL      
Sbjct: 801 PGVMQYMEETRLLATEQGY--------------------------VETLYGRRLYLP--- 831

Query: 575 GDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
            + +  N    +   R            +Q  + DI+ + M               ++++
Sbjct: 832 -EINARNAIRRKAAERAAINAP------MQGTAADIIKKAMILVDNWIEAEGTGRVNLLM 884

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +    ++   + +LM    S    +PL AE      +
Sbjct: 885 QVHDELVFEVKEDELEAITKQVTALMEAAVS--LDVPLIAESGFGDNW 930


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 218/582 (37%), Positives = 313/582 (53%), Gaps = 19/582 (3%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++  PVK+WD T+   MP+DL  Y  D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K+ L ID+P  R   T V A  +GLP +L   C   N +   
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
            K +EGKALI+  CK    +S     T   H + WQ F +Y   D+ A RE+++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           ++  E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           AL  ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++V
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356
           S+DGRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D 
Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVT 411
           + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+  ++      Y  
Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
            YA+AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++       
Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +A S +    ++   + + +K+  T C+ +K+ WR  H   +  W D+ +     
Sbjct: 484 PGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +Q  G           +L +RR K  + I LPS R L Y   
Sbjct: 543 IQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCYPSA 579


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 195/707 (27%), Gaps = 170/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S + +           A +   ++A                          +
Sbjct: 334 FAFDTETTSLEYMK----------AQLVGMSFAVKAGEAAYLPIAHDYPGAPEQLSLEFV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE    V  N  +++ +     G ++   ++  T + +           + 
Sbjct: 384 MQKLGPILADENKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMD 441

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 442 SLALKYLGHKNISFEDIAGKGKKQL---------------TFNQIELEKAAPYAAEDADI 486

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   I   G  ID +++    + + +   
Sbjct: 487 TLRLHQVLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATHSQRLGERLL 546

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  ++      +      L++ LF    +         +  T + +L         
Sbjct: 547 ELEKEAFEIAGEPF-NLSSPKQLQVLLFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPL 605

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +I+     S       + L   V+   +   T      + TGR S      QN+P   
Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIP--- 662

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA++G K+V AD + IE R++A ++ 
Sbjct: 663 ---------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQ 701

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFANG D++  T A+ F   +++V+ + R   K +                   
Sbjct: 702 DKGLLSAFANGLDVHSATAAEVFGVELEEVTSDMRRKAKAVNF--------------GLI 747

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +     +  + 
Sbjct: 748 YGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFERF 777

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL+  +   E  A                                    RRL   ++ 
Sbjct: 778 PGVLEYMETTREKAAENGYVETIF--------------------------GRRLHLPEIN 811

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627
                         R            +Q  + DI+ + M +          N   +++ 
Sbjct: 812 ARNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVHAWVNQQAPNTVKLLMQ 862

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E            +C LM++       +PL  E  E   +
Sbjct: 863 VHDELVFEIKTECTEQYTKQICELMSQAAQ--LDVPLIVEADEGDNW 907


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/725 (14%), Positives = 203/725 (28%), Gaps = 183/725 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49
             + +D ET S   +           A +   + A  +                      
Sbjct: 352 KCIALDTETDSLDSM----------SANLVGVSLALANGEACYIPLVHKTLVTTSAEQGD 401

Query: 50  ---------QSAM----------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
                       +           + L   L +  +  +  N  ++  +F    GI++  
Sbjct: 402 LFANEMETVGYELAKNQLNLTVCLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460

Query: 91  KRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +  T + + T       ++ +     L       +   GK                  
Sbjct: 461 VAF-DTMLESYTLNSTGRHNMDDLAERYLGHKTIEFEAIAGKGKNQL------------- 506

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIND 196
                        EY   D + T +L + L               + E  L  +   I  
Sbjct: 507 --TFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEIELPLVSVLSRIER 564

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253
            G  ID   + +    I +   +L++++     G + +   T  L+  LF   G+ +   
Sbjct: 565 NGVLIDPAKLKQQSSEIERRLAELEQEVH-SEAGSVFNLASTKQLQEILFEKLGLPILKK 623

Query: 254 -VDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQ 310
               +  T + +L    +       L++     S       + L   ++   GR+  +  
Sbjct: 624 TPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYH 683

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   IA
Sbjct: 684 QAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFIA 718

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G K+V AD + IE R++A +A +   +KAFA G+DI+ +T ++ F  P+D+V+ EQR 
Sbjct: 719 RKGYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRR 778

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   L Y               L + +        + F  +         ++ +  
Sbjct: 779 NAKAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAA 833

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRL 549
           E    + L+G    L           +        +      +      +A  +  +  +
Sbjct: 834 EKGYVETLLGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMI 884

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
            + R                                               ++Q      
Sbjct: 885 GIDR-----------------------------------------------VIQ------ 891

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY 668
                     +   +++ VHDE+V E  +         + + M K       +PL AE  
Sbjct: 892 --------HSDEIKMIMQVHDELVFEVKEDKVEHYSAVIKAEMEKAIQ--LNVPLIAEVG 941

Query: 669 EAKRY 673
               +
Sbjct: 942 VGDNW 946


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 205/709 (28%), Gaps = 172/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA +   ++A +                        +
Sbjct: 339 FAFDTETTSLDYM----------QADLVGMSFAVEAGKAAYLPIGHDYLGAPEQLSKEMV 388

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  +++ +  +  G+++   ++  T + +           + 
Sbjct: 389 FAKLGPLLADEQRPKVGQNLKYDKSVLARA-GLELNGIKF-DTMLESYVLNSVGTRHDMD 446

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +         Y   D + 
Sbjct: 447 SLALKYLGHKNISFEEIAGKGKNQL---------------TFNQIELDKAAPYAAEDADI 491

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   I   G  ID D++ K    I +   
Sbjct: 492 TLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLD 551

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L  G   +      L++ LF    +         +  T + +L         
Sbjct: 552 ELEKEAHELA-GEAFNLSSPKQLQVILFEKHELPVIKKTPKGAPSTAEEVLQELAHDYPL 610

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LI+     S       + L   V++D +   T      + TGR S      QN+P   
Sbjct: 611 PKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDPNLQNIP--- 667

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A+ G K+  AD + IE R++A ++ 
Sbjct: 668 ---------------------IRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQ 706

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA G D++  T A+ F   + +V+ + R   K +                   
Sbjct: 707 DKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNF--------------GLI 752

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +     +  + 
Sbjct: 753 YGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFERF 782

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL+  +   E  A +                            +     RRL      
Sbjct: 783 PGVLEYMESTREKAAELGY--------------------------VETLFGRRLYLP--- 813

Query: 575 GDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
            + +  N A+ +   R            +Q  + DI+ + M            N   +++
Sbjct: 814 -EINARNGASRKAAERAAINAP------MQGTAADIIKKAMITVNAWVKAQPANTVRLLM 866

Query: 627 TVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            VHDE+V E  +      +  +C LM++    A  +PL  E      ++
Sbjct: 867 QVHDELVFEIKEECVGDYMQHICLLMSQAA--ALDVPLIVESDSGDNWQ 913


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 96/707 (13%), Positives = 191/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET +   +           A +   + A +                        +
Sbjct: 348 ISFDTETDALDAMR----------ARLVGISLAVEPGRAAYIPVGHDYPGAPAQLPMQQV 397

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L+D     +  +  ++  + ++  G+ +       T + +           + 
Sbjct: 398 LDALRSVLQDPAKKKLGQHGKYDLHVLRRH-GVQVQGYH-DDTMLESFVLNSTATRHDMD 455

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L +S    +   GK                                Y   D + 
Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ---------------IPFSQVGIDEASRYAAEDADI 500

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L P               E  L  +  +I   G R+D D + +  + ++    
Sbjct: 501 TLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQSQDLSSRML 560

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
              +   +L  G   +      L+  LF    +            T +  L         
Sbjct: 561 AAQQKATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHEL 619

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L E V+ D GR+  +    GA  TGR S      QN+P  
Sbjct: 620 PRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA-ATGRLSSSDPNLQNIP-- 676

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G +L+ AD + IE R++A ++
Sbjct: 677 ----------------------IRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHLS 714

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AF  G D++  T A+ F   +++V+  +R   K +                  
Sbjct: 715 EDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GL 760

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +     +     + ++
Sbjct: 761 MYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSR 790

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    + + +                                 +     RRL  +D+
Sbjct: 791 YPGVRDFMERMRQQARDQGY--------------------------VETLFGRRLYLNDI 824

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
                 L        R            +Q  + DI+   M +  +          ++L 
Sbjct: 825 HARNQGLRAGA---ERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQ 875

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V ET  +    +   +   M++       +PL  +      +
Sbjct: 876 VHDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGVGNNW 920


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/702 (15%), Positives = 200/702 (28%), Gaps = 153/702 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQ-------SAMPSDL 57
           D ET S  PL          +A +      W + P                    + S L
Sbjct: 335 DTETNSIDPL----------EADLVGIGCCWGEGPTALAYIPVGHTAGEQLSMETVLSAL 384

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L D+    V  N+ ++R++ ++  G+ +         + +         +L +    
Sbjct: 385 KPILEDQQYPKVFQNAKYDRLVLRRA-GVSLTGV-VFDPMLASYVLNPENSHNLSDLALR 442

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L  +         K                   +     A     +YC  DV  T  L 
Sbjct: 443 YLELTTVSYTDLVPKG------------------KTIGEVAIAEVAQYCGSDVHTTYRLV 484

Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L               + E  +  +   +   G RID   + +  + +  +   +++ 
Sbjct: 485 PLLKADLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKA 544

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLI 278
                     +      L    F   G+D            T  + L          D +
Sbjct: 545 AYDAAGEEF-NLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSV 603

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     S      ++ L   +  + GR+         + TGR S      QN+P      
Sbjct: 604 VEYRTLSKLKSTYVDALPALIRPNTGRVHTDFNQA-ITTTGRLSSSNPNLQNIP------ 656

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                  S  +R   +   G +LV AD + IE R+LA ++ E  
Sbjct: 657 ------------------TRTAFSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEEPI 698

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IK +   ED++  T    F+   D+++ E+R + KV+   + Y  GA  F        +
Sbjct: 699 LIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARF-----AREM 753

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           D+ +           + +     +   MQ +   +     + G                 
Sbjct: 754 DIHRLDAKTFIDRFNQRYPNVFEYLQQMQREAIAYGYVKTIAGRRRY------------- 800

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                         ++                          I L S R           
Sbjct: 801 --FNFTTRS--LQALKGTDPTK--------------------IDLSSLR----------- 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIV 633
              N   + L+R            +Q  S DI+   M    +   GY   ++L VHDE++
Sbjct: 826 --TNGYDAGLLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDELI 877

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            E P   +  +   +   M    S A  +PLK E    K + 
Sbjct: 878 FEVPPDEWEELQPKIEQTMEDAVSLA--VPLKVEAQAGKNWM 917


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/710 (15%), Positives = 198/710 (27%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + ID ET S   +           A +   +   +           +            
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               MP     S L   L DE+++ +  N  ++  +  +     I       T +++   
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +   C   L       K   G  K+ I         +  Y    A+   + W
Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAVCYAAEDADVTFRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF     R    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 518 KLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271
              L+ +I  L  G   +      L   LF   G+      +     T   +L       
Sbjct: 570 MAGLEAEIHALAGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEG 628

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 688 P------------------------VRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF  G DI+  T ++ FN P++ +    R   K +               
Sbjct: 724 HIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN-------------- 769

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     +                                   H+     RR+  
Sbjct: 800 FERFPGIRGYMDETISFAKANG--------------------------HVETLFGRRINT 833

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626
                + +          R            +Q  + D++   M    K        ++L
Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMPATMLL 883

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +    ++   +  +M     P+    +PL  E      +
Sbjct: 884 QVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 201/706 (28%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           +  D ET S +P+           A I   +++           T Q            +
Sbjct: 352 VAFDTETDSLEPM----------NARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +  D     +A N+ ++  +      + +    +  T + +       P  +  
Sbjct: 402 LAFLKPWFEDSDSPKIAQNAKYDLHVMANH-DVWVKGL-FEDTMLASYILEAHKPHGMDA 459

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                LN++    +   GK                               +Y   D E T
Sbjct: 460 LALRWLNYNTIKYEEVAGKGASQ---------------ITFDQVPIDTATKYAAEDAEVT 504

Query: 171 RELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L   L    D   +L             +   +   G  ID D +      IA + K 
Sbjct: 505 LRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQSAEIADKLKL 564

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275
           ++E   +L  G   +      +   LF   G+ +V  +      T + +LS         
Sbjct: 565 IEEQAFELAGGSF-NLNSPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLSKLAEDYPLP 623

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +L   + +       + L   V+   GR+        A  TGR +      QN+P   
Sbjct: 624 AKLLEHRSLAKLKSTYTDKLPRMVNARTGRVHTNYAQAVA-VTGRLASNDPNLQNIP--- 679

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   IA+ G  LV AD + IE R++A I+G
Sbjct: 680 ---------------------VRTAEGRRVREAFIAAPGCVLVSADYSQIELRIMAHISG 718

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  I AF  G DI+  T ++ F   +++V+ + R   KV+                   
Sbjct: 719 DEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINF--------------GLI 764

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A    +   A +L    + A++
Sbjct: 765 YGMS------------------------------AFGLAGNLGITREAAKLYIDRYFARY 794

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV +   ++                                D  +     RRL   ++K
Sbjct: 795 PGVAKFMDNVRAQAKE--------------------------DGFVQTVFGRRLWLPEIK 828

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTV 628
                         R            +Q  S D++   M          K    +++ V
Sbjct: 829 SPNGPRRAGA---ERAAINAP------MQGTSADLIKMAMVELSAWLKAEKLNSKMIMQV 879

Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE++ E P      +   +  +MT+       +PL+        +
Sbjct: 880 HDEVIFEVPKGELELIQKRVPEIMTQVAK--LRVPLEVGCGVGNNW 923


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 184/700 (26%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S   +           A +   ++A ++                       + 
Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L  YL D+    V  N  ++  +  +   I++   ++  T + +          ++ +
Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIKF-DTMLESYVYNSVAGKHNMDS 463

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  +    +   GK                      +  A +    Y   D + T
Sbjct: 464 LALRYLQHNTISFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADIT 508

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L   L    +            E  L  +   +  +G  ID  L+      I Q   +
Sbjct: 509 LRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSLEIGQRLDE 568

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L++   ++      +      L+  LF    +         +  T + +L    +     
Sbjct: 569 LEKAAFEVAGEEF-NMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLP 627

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            LIL     +       + L + ++   GR+  +      + TGR S      QN+P   
Sbjct: 628 KLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP--- 683

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A +G K++  D + IE R++A ++ 
Sbjct: 684 ---------------------IRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQ 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AF+ G+DI+  T A+     I++V+ E R   K +   L Y             
Sbjct: 723 DKALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMS-----AFGLA 777

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             + + +          FE +     +    +    E    + L G    L         
Sbjct: 778 KQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHL--------- 828

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                                                
Sbjct: 829 PEINARNGMRRKAAERAAINAPMQGTAADII----------------------------- 859

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                            T G      ++Q                        VHDE+V 
Sbjct: 860 -----KKAMILVDEWVETEGKDRVNLLMQ------------------------VHDELVF 890

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  +     V   +  LM +       +PL AE      +
Sbjct: 891 EVKEDALDEVTTKVRELMEQAVQ--LDVPLVAEAGFGNNW 928


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 188/707 (26%), Gaps = 173/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A I   +++           T              +
Sbjct: 367 VAVDTETTSLDEMR----------AQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEV 416

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L +     +  N  ++R +F    GI++       T + +    +  P  L +
Sbjct: 417 LARLKPWLENPARPKLGQNIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLAS 474

Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   S    +   GK    I         +                  EY   D +
Sbjct: 475 LAERHVGRSGINYEDLCGKGVHQIKFNQVDIARAA-----------------EYSCEDSD 517

Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T ++ + L P              E         I   G  ID  ++ +    + Q   
Sbjct: 518 QTLDVHRVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLL 577

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQLA 274
           +L+ +  ++      +      L    F   G          +  T + +L         
Sbjct: 578 QLETEAYEMAGQPF-NLGSPKQLAEIFFDKLGMKVVKKTPSGARSTDEDVLEKLAEDHPL 636

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              +L   + S       + L++  +   GR+        A  TGR S      QN+P  
Sbjct: 637 PAKLLEHRSLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP-- 693

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   +A  G  +  AD + IE R++A I+
Sbjct: 694 ----------------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHIS 731

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++  + AF  G D++  T A+ F   +++VS EQ                         
Sbjct: 732 GDESLLHAFTAGLDVHRATAAEVFGVALEQVSSEQ------------------------- 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                + +  +  L         A    +   A       +  +
Sbjct: 767 -------------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDRYFQR 807

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV        +                                       RRL+  ++
Sbjct: 808 YPGVKHYMDSTRQLAKEQGYVETVF--------------------------GRRLLLPEI 841

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                          R            +Q  + D++   M          K G  +++ 
Sbjct: 842 NSPNGPRRAGA---ERAAINAP------MQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQ 892

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+     V   +  LM         +PL AE      +
Sbjct: 893 VHDELVFEVPEAEVEWVRTEIPRLMAGVAE--LKVPLLAEIGFGPNW 937


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/721 (16%), Positives = 201/721 (27%), Gaps = 185/721 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            +  D ET S            A QA +   + + +                        
Sbjct: 407 YVSFDTETTSLD----------AMQAELVGVSLSTEPGKACYVPLGHVDGEGDLLGGGGL 456

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D +V+ +A N  ++ ++  +  GIDI    +  T +L+ T 
Sbjct: 457 VEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITP--FDDTMLLSYTV 513

Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                   +       L+      K   G  K++I         +               
Sbjct: 514 DAGKGGNGMDELSERWLDHKPIPFKEICGSGKSMITFDKVAIDKATA------------- 560

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVL 207
               Y   D + T  L+  L P    ER           +  +   +  RG  +D  ++ 
Sbjct: 561 ----YAAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLS 616

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKS 263
           +L    AQ     + +I +L  G   +      L   LF   G+     ++     T   
Sbjct: 617 RLSGEFAQGMAGKESEIYELA-GENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQ 675

Query: 264 ILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           +L             I++    S       + L   ++   GR+  +     A+ TGR S
Sbjct: 676 VLEDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALA-ATTTGRLS 734

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA  G KL+ AD 
Sbjct: 735 SSEPNLQNIP------------------------VRTEEGRKIRKAFIAEKGHKLISADY 770

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA +A      KAF +G DI+  T ++ F TPI+ +    R   K +      
Sbjct: 771 SQIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINF---- 826

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A +  +   
Sbjct: 827 ----------GIIYGIS------------------------------AFGLANQLGISRG 846

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+    + + +                                   
Sbjct: 847 EAGDYIKTYFERFPGIKDYMEAIKKQVHANGYVTTIF----------------------- 883

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
               R+  Y +V      +            Y        +Q  + DIL   M       
Sbjct: 884 ---GRKAHYPEVNTKNPNMR---------AFYERAAINAPIQGSAADILRRAMVRMENRL 931

Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672
              K    ++L VHDE++ E PD     ++  +  +M     P+    +PL+ +   A  
Sbjct: 932 EGSKLDAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDARAANN 991

Query: 673 Y 673
           +
Sbjct: 992 W 992


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 199/706 (28%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D ET S   +          +A +   ++A D+                    +  +
Sbjct: 340 FAFDTETTSLNYI----------EAELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEV 389

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L  E    V  N  ++  +      I++    +  T + +           + 
Sbjct: 390 LKQLKPLLESEKHKKVGQNLKYDMSVLANY-DIELAGIEF-DTMLESYCLNSVASRHDMD 447

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                           +    Y   D + 
Sbjct: 448 TLALHHLNHVNIKFEEIAGKGKNQL---------------TFDQIEVEQAAPYASEDADI 492

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L ++L P               E  L  +   +   G  +D  L+L+   L  +  K
Sbjct: 493 TMRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLK 552

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+++  ++      +      L++  +   G+ +          T + +L    +    
Sbjct: 553 ELEKEAYEIAGKEF-NLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEEVLQELALDYPL 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     S       + L   +    GR+  +     A  TGR S      QN+P  
Sbjct: 612 PKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIA-ATGRLSSTEPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R+  IA  G K++ AD + IE R++A ++
Sbjct: 669 ----------------------IKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLS 706

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  +KAF  G D++  T A+ F+ P+D+V+  QR   K +   L              
Sbjct: 707 QDEGLLKAFEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLI------------- 753

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+     ++ + +                                   +     + A+
Sbjct: 754 -YGMSAFGLAKQIDTD------------------------------RNTAQDYINTYFAR 782

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    +   E  A +                            +     RRL   ++
Sbjct: 783 YPGVETYMESTKEKAADLGY--------------------------VETLYGRRLYLPEI 816

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-----NGYDIVLTV 628
                          R            +Q  + DI+   M    K      G  +++ V
Sbjct: 817 HSKNGMRR---KAAERTAINAP------MQGSAADIIKLAMLEVDKWLKDVKGIKMIMQV 867

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +         +  LM         +PL A+      +
Sbjct: 868 HDELVFEVEEDKLELAQKEIPKLMQSVAE--LSVPLIADVGVGDNW 911


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/710 (14%), Positives = 197/710 (27%), Gaps = 172/710 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET S   L          +A I   ++A                         
Sbjct: 315 KLFAFDTETTSLDYL----------EARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFD 364

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
           A+ +DL   L D T + V  N  ++R +      I++       T + +           
Sbjct: 365 AVMADLKPLLEDPTKLKVGQNLKYDRHVLLNH-DINLQGIA-HDTMLESYVLDSTATRHD 422

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L+      +   GK                      +    +    Y   D 
Sbjct: 423 MDSLAKKYLDRDTIHFEDIAGKGKKQL---------------TFNQIGLEEAAPYAAEDA 467

Query: 168 EATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L + L P             + E  L  +  T+   G  ID+ ++    + +A +
Sbjct: 468 DITLQLHETLWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQ 527

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271
             +L++   +       +      L+  L+    + +   +      T + +L       
Sbjct: 528 IAELEKQAHESAGQTF-NLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDG 586

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                +I+     S       + L   V+   GR+  +      + TGR S      QN+
Sbjct: 587 YELPQIIMQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAV-TATGRLSSSDPNLQNI 645

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +ASNG  L+ AD + IE R++A
Sbjct: 646 P------------------------IRSENGRRIREAFVASNGYTLLAADYSQIELRIMA 681

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G++  +KAFA GEDI+  T ++ F+  ++ VS +QR   K +               
Sbjct: 682 HLSGDESLLKAFAAGEDIHRHTASEIFDIALEDVSSDQRRSAKAIN-------------- 727

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   + +  +         + +
Sbjct: 728 FGLIYGMS------------------------------AHGLSKQLGIERHQAADYMQTY 757

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             ++ GV Q   +  E                                       RRL  
Sbjct: 758 FDRYPGVRQYMDNTREQAKEQGYVETIF--------------------------GRRLYL 791

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624
            ++               R            +Q  + DI+   M            G  +
Sbjct: 792 PEINSSNGMRRQYA---ERTAINAP------MQGSAADIIKRAMIAIHSWLSEADTGIRM 842

Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE+V E P          +   M         +PL+        +
Sbjct: 843 IMQVHDELVFEVPLEQLDMAKDTIEKFMMGAAE--LKVPLEVGIGVGDNW 890


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 192/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
            L +D ET    P+           A +   ++A+ +            TE   +     
Sbjct: 352 ILSLDTETTGTDPIR----------AELVGMSFAYAENQAFYVPVPADRTEAQRIVDKFK 401

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +   + V  N  ++ ++     G++I       T +        L   +       
Sbjct: 402 PVFENPQTLKVGQNIKYDMLVLANY-GVEIQG-PMFDTMIAHYVLQPELHHGMDYLAEIY 459

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L++     +   G K    +  +    +  Y                Y   D + T +L 
Sbjct: 460 LHYETIKIEELIGPKGKNQKNMRDLDPANIYR---------------YACEDADVTLKLK 504

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L              D E  L  +   +   G RID + + +          +++E++
Sbjct: 505 NVLEKELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEV 564

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +L      +      +   LF    I D    ++     T + +L          + IL
Sbjct: 565 HRLAGVEF-NIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKIL 623

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 624 EHRGLKKLLGTYIDALPQLINPETGHIHTSFNQTV-TATGRLSSSNPNLQNIP------- 675

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   I   G +   AD + IE R++A ++G+   
Sbjct: 676 -----------------VRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHM 718

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF   +DI+  T AK +   ++ V++EQR+  K                      G+ 
Sbjct: 719 IEAFRANQDIHAATAAKIYKEKLEDVTREQRSKAKTANF--------------GIIYGIS 764

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +   ++                                 +     + +   +   +  V 
Sbjct: 765 VFGLAER------------------------------LGIDRKEAKELIDGYFENYPHVK 794

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +      +                                 I     RR    D+    +
Sbjct: 795 EYMDSSIQAARQKGY--------------------------IETVFRRRRYLPDINSRNA 828

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +        R            +Q  + DI+   M    +          ++L VHDE+
Sbjct: 829 VVRGYA---ERNAINAP------IQGSAADIIKVAMIRIYRRFREEGIRSKMILQVHDEL 879

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +  + M     +   +PL A+    K +
Sbjct: 880 NFSVVPEEKEKVQQIVIAEMESA--YKMKVPLLADCGWGKNW 919


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/717 (14%), Positives = 194/717 (27%), Gaps = 178/717 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51
                D ET              A+QA +   ++A           T           + 
Sbjct: 342 KLFAFDTETT----------GIDAQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRD 391

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNG 104
            +   L   L D T + V  ++ F+  +            GI +    +  T + +    
Sbjct: 392 TVLLALKPLLEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAF-DTMLESYVLN 450

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  + +     L++     +   GK                         A +  G
Sbjct: 451 ATATRHDMDSLAKKYLDYDTVAFQDIAGKGAKQL---------------TFDQIALEQAG 495

Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L               D E  L  +   I  +G  +D DL+   
Sbjct: 496 PYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQ 555

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL 265
              +  +  +L+    ++      +      L   L+   G+            T + +L
Sbjct: 556 SIELGNKMVELERQAFEIAGEEF-NLGSPKQLGAILYEKLGLPVLKKTGKGQASTAEEVL 614

Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           +           +++   + S       + L E ++   GR+  +     A  TGR S  
Sbjct: 615 AKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSS 673

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   IA  G K++ AD + 
Sbjct: 674 DPNLQNIP------------------------VRTAEGRRIRQAFIAPKGYKMLAADYSQ 709

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++ ++  + AF +  D++  T A+ F   +  V+ +QR   K +        
Sbjct: 710 IELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINF------ 763

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 +      +     
Sbjct: 764 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 785

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + A++ GV +  +      +                              +   
Sbjct: 786 KAYIDVYFARYPGVREYMERTRAQASDQGY--------------------------VETF 819

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RRL   D+  +      A     R            +Q  + DI+ + M         
Sbjct: 820 FGRRLYLPDIHSNKPQERAAA---ERTAINAP------MQGTAADIIKKAMVLVDNWLTD 870

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E  +     V   +   M+        +PL  E      +
Sbjct: 871 SGLDAKVILQVHDELVLEVREDLVAEVSEKIREYMSAAAQ--LDVPLLVEVGVGDNW 925


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/710 (15%), Positives = 198/710 (27%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + ID ET S   +           A +   +   +           +            
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               MP     S L   L DE+++ +  N  ++  +  +     I       T +++   
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +   C   L       K   G  K+ I         +  Y    A+   + W
Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAVCYAAEDADVTFRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF     R    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 518 KLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271
              L+ +I  L  G   +      L   LF   G+      +     T   +L       
Sbjct: 570 MAGLEAEIHALAGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEG 628

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 688 P------------------------VRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF  G DI+  T ++ FN P++ +    R   K +               
Sbjct: 724 HIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN-------------- 769

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     +                                   H+     RR+  
Sbjct: 800 FERFPGIRGYMDETIAFAKANG--------------------------HVETLFGRRINT 833

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626
                + +          R            +Q  + D++   M    K        ++L
Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMPATMLL 883

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +    ++   +  +M     P+    +PL  E      +
Sbjct: 884 QVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA +   ++  ++                      ++
Sbjct: 351 FAFDTETTSLNYM----------QAELVGMSFCIEEGEAAYLPLAHDYADAPEQLDRDSV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L D+    V  +  +++ +      I++    +  T + +           + 
Sbjct: 401 LALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYVLDSVATRHDMD 458

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 459 SLAQHYLGLSTVHFEDIAGKGAKQL---------------TFNQIPLEQAAHYAAEDADI 503

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   +               + E  L  +   +   G  ID   + +  + +A    
Sbjct: 504 TLRLHNHIWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVLIDSQKLGQQSQDLASRIL 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+ ++  L      +   T  L+  LF    +         +  T + +L    +T   
Sbjct: 564 QLENEVHILAGEEF-NLGSTKQLQEILFKKLDLPVLKKTPKGAPSTSEEVLQELALTYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     S       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKLLMEFRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQA-ITATGRLSSTEPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   I   G K+V AD + IE R++A ++
Sbjct: 680 ----------------------IRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   +KAF+ G+DI+  T A+ FN  +++V+ EQR   K +                  
Sbjct: 718 QDKGLLKAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLSKQLNVSRQDAQHYMDLYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  +D                                          RRL   D+
Sbjct: 794 YPGVLKYMEDARVVAKEKGYVSTVF--------------------------GRRLYLPDI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
                          R            +Q  + DI+ + M            +   +++
Sbjct: 828 NASNGLRR---KGAERAAINAP------MQGTAADIIKKAMLKVDAWIDTLPNDQTRMIM 878

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +    S   T+  LM K  S    +PL  E    + +
Sbjct: 879 QVHDELIFEIKEQNVESDKNTIVDLMEKAVS--LDVPLIVEAGVGENW 924


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/710 (14%), Positives = 202/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
            +  D ET S   +          QA +   + A             +            
Sbjct: 348 YVAFDTETTSLNEM----------QADLVGISLATAPGRACYIPVAHKDGAADDLFGSDA 397

Query: 52  ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                     + + L   L D+ ++ +  N  ++  +     GI +       T +++  
Sbjct: 398 RAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAH-GITVAP--IDDTMLMSYA 454

Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       LN S    +   G  KA +        ++  Y    A+  ++ 
Sbjct: 455 LHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVPVAEAVKYAAEDADITLRL 514

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W        R    T  +++ L      ER L  +   +   G  +D D +  +    AQ
Sbjct: 515 WLTLKPQLHRAQVTT--VYETL------ERPLVPVLARMERDGVLVDRDTLRAMSGKFAQ 566

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I  L      +      L   LF   G+   +  +     T   +L      
Sbjct: 567 KMAGLESEIHALARRSF-NVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLEDLATE 625

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L + +  D GR+  +    GAS TGR+S      QN+
Sbjct: 626 HDLPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGAS-TGRFSSSDPNLQNI 684

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A+ G +LV  D + IE R+LA
Sbjct: 685 P------------------------VRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILA 720

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +AG +   +AF +G DI+  T ++ FN P+ +++ E R   K +               
Sbjct: 721 HVAGIETLKQAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAIN-------------- 766

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 767 FGVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRY 796

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+       T                                  +     R++  
Sbjct: 797 FERFPGIKDYMDATTAFAKEHGY--------------------------VQTLFGRKIHT 830

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + +          R            +Q  + DI+   M             ++L
Sbjct: 831 P----EIAAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPEAIEGLPCKMLL 880

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +     +  +   +M     P+    +PL  +  + + +
Sbjct: 881 QVHDELIFEVAEDSVDRLIDVARAVMQGAADPAVRLDVPLVVDAGQGRNW 930


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET S   L           A I   A+A                         A+
Sbjct: 351 FAFDLETDSLDTL----------SANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRAAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  ++R + K    I++   ++  T + +           + 
Sbjct: 401 LAQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKY-DTMLESYCLNSVGGKHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 459 SLAARWLNHKTVTFEEIAGKGKNQL---------------TFNQIAIEQAGHYAAEDADV 503

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   +   G  ID +++ K  + +     
Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLA 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    L      +   T  L+  LF   GI     +      T + +L+   +    
Sbjct: 564 ELEQQAHDLAGEPF-NLSSTKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPVTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA   K++V AD + IE R++A ++
Sbjct: 680 ----------------------VRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA GEDI+  T ++ F   + KVS EQR   K +                  
Sbjct: 718 QDKGLLAAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  ++  E  A                              +     RRL   D+
Sbjct: 794 YPGVLRYMEETREQAAAKGY--------------------------VETLDGRRLWLPDI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
               +          R            +Q  + DI+   M            +   +++
Sbjct: 828 TSSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLLEQKDDKVKMIM 878

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       S    +  LM  +      +PL  E    + +
Sbjct: 879 QVHDELVFEIHQDAVASASDKIRQLMEGSMK--LDVPLLVEVGTGENW 924


>gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 196/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A                          +
Sbjct: 334 FAFDTETTSLDYMK----------AQLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE    V  N  +++ +     G  +   ++  T + +           + 
Sbjct: 384 MQKLGPILADENKAKVGQNLKYDKSVLANA-GFALNGIKF-DTMLESYVFNSVGTRHDMD 441

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 442 SLALKYLGHKNISFEDIAGKGKKQL---------------TFNQIELEKAAPYAAEDADI 486

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             D E  L  +   I   G  ID +++      + +   
Sbjct: 487 TLRLHEVLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLI 546

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+++  ++      +      L++ LF   G+ +       +  T + +L         
Sbjct: 547 ELEKEAFEIAGEPF-NLSSPKQLQVLLFEKLGLPIIKKTPKGAPSTAEEVLQELAHDYPL 605

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     S       + L   V+    R+  +      + TGR S      QN+P  
Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQA-ITATGRLSSTDPNLQNIP-- 662

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA++G K+V AD + IE R++A ++
Sbjct: 663 ----------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS 700

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFANG D++  T A+ F   +D V+ + R   K +                  
Sbjct: 701 QDKGLLNAFANGLDVHSATAAEVFGVELDDVTTDMRRKAKAVNF--------------GL 746

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 747 IYGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFER 776

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             GVL+  +   E  A                                    RRL   ++
Sbjct: 777 FPGVLEYMETTREKAAENGYVETIF--------------------------GRRLHLPEI 810

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
                          R            +Q  + DI+ + M +  +       N   +++
Sbjct: 811 NARNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVNRWVHEQAPNTIKLLM 861

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E            +C LM++    A  +PL  E  E   +
Sbjct: 862 QVHDELVFEIKTDCAPEYTKHICELMSQAA--ALDVPLIVEADEGDNW 907


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/710 (15%), Positives = 198/710 (27%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + ID ET S   +           A +   +   +           +            
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               MP     S L   L DE+++ +  N  ++  +  +     I       T +++   
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +   C   L       K   G  K+ I         +  Y    A+   + W
Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAVCYAAEDADVTFRLW 517

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF     R    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 518 KLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271
              L+ +I  L  G   +      L   LF   G+      +     T   +L       
Sbjct: 570 MAGLEAEIHALAGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEG 628

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 688 P------------------------VRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILA 723

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF  G DI+  T ++ FN P++ +    R   K +               
Sbjct: 724 HIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN-------------- 769

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     +                                   H+     RR+  
Sbjct: 800 FERFPGIRGYMDETIAFAKANG--------------------------HVETLFGRRINT 833

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626
                + +          R            +Q  + D++   M    K        ++L
Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMPATMLL 883

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +    ++   +  +M     P+    +PL  E      +
Sbjct: 884 QVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 207/708 (29%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
             +D ET S   +          +A +   ++A +                         
Sbjct: 356 FAVDTETTSLNYM----------EAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEA 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +  +  V  N  ++  +    +GI +    +  T + +          ++ 
Sbjct: 406 LAKLKPLLENPEIKKVGQNLKYDMSILAN-VGIKLQGIAF-DTMLESYVFNSVASKHNMD 463

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  + ++   Y   D + 
Sbjct: 464 DLALKYLGHKNISFEEIAGKGAKQL---------------TFNQISLEVAAPYAAEDADI 508

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             + E  L  +   +  +G  ID  L+ +  E +A+   
Sbjct: 509 TLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTID 568

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L++   ++  G   +      L++  F   G  +       +  T + +L    +    
Sbjct: 569 ELEQKAYEIA-GESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 627

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 628 PKIILQHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 684

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A ++
Sbjct: 685 ----------------------IRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLS 722

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F+    +V+ EQR   K +                  
Sbjct: 723 QDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVN--------------FGL 768

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 769 IYGMS------------------------------AFGLARQLDIPRGEAQKYIDTYFKR 798

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL   ++     A +                            +     RRL    +
Sbjct: 799 YPGVLNYMEETRAIAADLGY--------------------------VSTLYGRRLYLPAI 832

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K   +    A     R            +Q  + DI+ + M N              +++
Sbjct: 833 KDRNAMRRQAA---ERAAINAP------MQGTAADIIKKAMINVADWIANETDGEITLIM 883

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       ++   +C LM +       + L AE      +
Sbjct: 884 QVHDELVFEVDSDKAEALQEKVCQLMAEAAD--LDVELLAEAGLGDNW 929


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/709 (14%), Positives = 186/709 (26%), Gaps = 174/709 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------- 50
             D ET S  P+           A +   ++A +           +              
Sbjct: 361 AFDTETTSLDPMA----------ARLVGMSFAVEPGEAAYLPLAHRGAAQLPEAPEQLPL 410

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSS 108
             +   L  +   +    +  N  ++  +     GI +       T + +          
Sbjct: 411 DEVLDRLRPWFESDRHAKLGQNLKYDAHVLANH-GIALRGIA-HDTLLESYVLESDKAHD 468

Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L  +        GK                               EY   D 
Sbjct: 469 MDSLAKRHLGLATIPYTEVCGKGAKQIG---------------FDEVDVARATEYAAEDA 513

Query: 168 EATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + L P             + E  +  + Q +   G  ID  L+ +  E + + 
Sbjct: 514 DVTLRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRR 573

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
              L+ +   L      +      L   LF   G+ +V  +      T + +L       
Sbjct: 574 LYTLEGEAHALAGQPF-NLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDY 632

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L     S       + L   V+   GR+  +     A  TGR S      QN+P
Sbjct: 633 PLPKLLLEHRGLSKLKSTYADKLPRMVNPRTGRVHTSFSQATA-VTGRLSSSEPNLQNIP 691

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R+  IA     +V AD + IE R++A 
Sbjct: 692 ------------------------IRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAH 727

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   ++AFA GED++  T  + F     +V+ EQ                       
Sbjct: 728 LSDDARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQ----------------------- 764

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                  + +  +  L         A    +   A +     + 
Sbjct: 765 ---------------------RRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWIDRYF 803

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ GV +                                              RRL   
Sbjct: 804 ARYPGVAEYMDRTRAEAREQGYVETVF--------------------------GRRLYLP 837

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
           D++   +          R            +Q  + D++ + M               +V
Sbjct: 838 DIRASQAGRRAGA---ERAAINAP------MQGTAADLIKKAMIATDAWLASCGLKSKLV 888

Query: 626 LTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E P     +V   L  LM    +    +PL  E      +
Sbjct: 889 LQVHDELVLEVPGAELETVREELPRLMGGVAT--LKVPLLVEVGAGDNW 935


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 97/703 (13%), Positives = 186/703 (26%), Gaps = 165/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQS---AMPSDL 57
             L +D ET S   +           A +   ++A  +           +     + +  
Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +  ++ V  N  ++  + +   GI++  K W  T +        L  ++      
Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLRNY-GIELKGKMW-DTMIAHYLIQPELHHNMDYMAEI 456

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            LN+     +   G K    +  +                       EY   D + T  L
Sbjct: 457 YLNYQTIHIEELIGPKGKNQKSMRS---------------LPPSQVYEYAAEDADITLRL 501

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             +L P              E  L  +   +   G  +D   + +  +       +++  
Sbjct: 502 KNKLEPELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEAR 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L            I
Sbjct: 562 IYELA-GEQFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADI 620

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   G +  +      + TGR S      QN+P      
Sbjct: 621 LEHRGLKKLIGTYIDALPKLINPKTGHIHTSFNQT-ITATGRLSSSDPNLQNIP------ 673

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                               G     +R   I   G     AD + IE RV+A ++ +  
Sbjct: 674 ------------------IRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAE 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IK F+ G+D++  T A  +  PI++V++++R   K     + Y               L
Sbjct: 716 MIKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIY-----GITVFGLAERL 770

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           D                                       +     +++   +      V
Sbjct: 771 D---------------------------------------IPRDEAKMLIDGYFDTFPQV 791

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   E                                       RR    D+    
Sbjct: 792 HDYMEKSKEVAREKGYVTTLF--------------------------GRRRYLPDINSHN 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           +   T      R            +Q  + DI+   M               ++L VHDE
Sbjct: 826 A---TVRGFAERNAINAP------IQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDE 876

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M         +PL A+    K +
Sbjct: 877 LNFSVYPDEKEKVEGIVLQEMQNA--LNLSVPLVADSGFGKNW 917


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 196/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET +   L           A I   ++A                         A+
Sbjct: 351 FAFDLETDALDTL----------SANIVGISFAIAPGEAAYLPVAHDYLDAPEQLDRAAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D++   V  N  ++R + K    I++   ++  T + +           + 
Sbjct: 401 LAQLKPLLEDDSAWKVGQNLKYDRGVLKNY-DIELAGIKF-DTMLESYILNSVVGKHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +    Y   D + 
Sbjct: 459 SLAARWLNHKTVTFQEIAGKGKNQL---------------TFNQIALEQASHYAAEDADV 503

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++ +  + +     
Sbjct: 504 TLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLA 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +   T  L++ LF   GI     +      T + +L+   +    
Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTSYHQAV-TATGRLSSADPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A+ G ++V AD + IE R++A ++
Sbjct: 680 ----------------------VRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA GEDI+  T ++ F  P+DKVS EQR   K +   L Y            
Sbjct: 718 QDKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMS-----AFGL 772

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++            FE +     +    +         + + G    L        
Sbjct: 773 SRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASKGYVETIEGRRLWL-------- 824

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                       R ++  D 
Sbjct: 825 -PDIKSSNAIRRKAAERAAINAPMQGTAADII-------------------KRAMIAVDA 864

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             +    N+                               M           + VHDE+V
Sbjct: 865 WLEQQNDNSVR-----------------------------MI----------MQVHDELV 885

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       +    + +LM  +      +PL  E      +
Sbjct: 886 FEVKAEAVEAASQKIRALMEGSVQ--LDVPLLVEVGVGDNW 924


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 199/716 (27%), Gaps = 178/716 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L  D ET S  P+          QA +   + A             +             
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                 A  + L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                        +        
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 542

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +AQ     +++I  L             L   LF   G+     ++     T   +L  
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 661

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      I++    +       + L   ++   +   T     ++ TGR S     
Sbjct: 662 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 721

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G KL+ AD + IE 
Sbjct: 722 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 757

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +           
Sbjct: 758 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 808

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 809 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 833

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +  +  G+    +                                           R
Sbjct: 834 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 867

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R  Y D++          +   R            +Q  + DI+   M            
Sbjct: 868 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 918

Query: 621 GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 919 AARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/691 (16%), Positives = 200/691 (28%), Gaps = 129/691 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAM-----PSDL 57
           D ET +  P            A +      W   P  +            +        L
Sbjct: 395 DTETTALSP----------RDAQLVGIGCCWGPAPDQIAYLPLGHSQGGNLDLTLALEQL 444

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L D        N+ ++R++ K   G+ +       T + +         +L +    
Sbjct: 445 RPLLEDARYPKAFQNTKYDRLVLK-FQGVHLQGV-VFDTMLASYVLNPEGSHNLTDLSRK 502

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L+ +         K           D           +  +  F    K   +      
Sbjct: 503 YLDITAQSYTDLVEKGQN------LADLSVEAIANYCGLDVYATFQLVPKLRADLLDANP 556

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K L  L   E+ L  +   +   G RID D + +L + + Q+   L+E       G   +
Sbjct: 557 KLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAY-GLAGETFN 615

Query: 235 SRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 L   LF    +D+    +      T  + L          DLIL     +    
Sbjct: 616 LGSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHRTLAKLKS 675

Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V SD GR+         + TGR S      QN+P                 
Sbjct: 676 TYVDALPNLVRSDTGRVHTDFNQA-ITATGRLSSSNPNLQNIP----------------- 717

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                       S  +R   I   G  LV AD + IE R+LA ++ E   ++A+   +D+
Sbjct: 718 -------IRTEFSRQIRKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLVEAYQQHQDV 770

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T         + ++ E+R + K++   + Y  GA   +  A   G+           
Sbjct: 771 HKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGA---QRFARESGVSF--KQAKGFI 823

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              +E +     +   M+ Q       + L+G                            
Sbjct: 824 DRFYERYPLVFRYLKQMEGQAIALGYVETLLGRRRYFSFD-------------------- 863

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                   R  + +    P       +++      ++      +
Sbjct: 864 -----------------------SRELQQLRGKDPD----SLAELDLSQLKVSQYDRGQL 896

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
           R            +Q  S DI+   M    +        ++L VHDE+V E P + +  +
Sbjct: 897 RAAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQVHDELVFEMPPSEWEPL 950

Query: 645 GTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
            +L    M +       +PL AE +    + 
Sbjct: 951 RSLIQATMAEAVP--LSIPLLAEIHAGPNWM 979


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 310 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVGHDYLDAPQQLDRDWV 359

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
            + L   L +  +  V  N  ++  +  +  GI +       T + +           + 
Sbjct: 360 LAQLKPLLENPQLAKVGQNLKYDASVVARY-GITMRGIA-HDTMLASYVYNSVGGKQDMD 417

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 418 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIDLEQAAPYAAEDADV 462

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL  L +            E  L  +   +   G  ID  L+    + IAQ   
Sbjct: 463 TLRLHHRLQALLEADAPLFGVYRDIEVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLV 522

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    +L D    +      L+  LF    +         +  T + +L    +    
Sbjct: 523 ELERKAYELADQEF-NLSSPKQLQTILFEQMKLPVVKKTPSGTPSTNEEVLQELALDYPL 581

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 582 PAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 638

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K++  D + IE R++A ++
Sbjct: 639 ----------------------IRNQEGRRIRQAFIAPSGWKIMAVDYSQIELRIMAHLS 676

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+     ID+V+ EQR   K +                  
Sbjct: 677 GDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNF--------------GL 722

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +  +  +     +  +
Sbjct: 723 IYGMS------------------------------AFGLAKQLGIPRSEAQHYMDKYFER 752

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GVL+  ++     A                              +     RRL   ++
Sbjct: 753 YPGVLRYMEETRSMAAEQGY--------------------------VETLFGRRLHLPEI 786

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626
           +              R            +Q  + DI+ + M                +++
Sbjct: 787 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDNWIETEGQGRVKLLM 837

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  ++    +   +  LM         +PL A+      +
Sbjct: 838 QVHDELVFEVQESALSEIESKVQELMESAAQ--LNVPLVADAGHGNNW 883


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/702 (16%), Positives = 194/702 (27%), Gaps = 152/702 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  D R+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F T  + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              +     +   G     +      +A  +     + + R   +    L          
Sbjct: 827 -PDIHNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASLW--------- 876

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                              D L             +++ VHDE+
Sbjct: 877 -----------------------------------DCLK----------SKLIMQVHDEL 891

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E P+     V   L  +M K       +PL AE      +
Sbjct: 892 VLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGAGMNW 933


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 184/700 (26%), Gaps = 158/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S   +           A +   ++A ++                       + 
Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L  YL D+    V  N  ++  +  +   I++   ++  T + +          ++ +
Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIKF-DTMLESYVYNSVAGKHNMDS 463

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  +    +   GK                      +  A +    Y   D + T
Sbjct: 464 LALRYLQHNTISFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADIT 508

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L   L    +            E  L  +   +  +G  ID  L+      I Q   +
Sbjct: 509 LRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSVEIGQRLDE 568

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L++   ++      +      L+  LF    +         +  T + +L    +     
Sbjct: 569 LEKAAFEVAGEEF-NMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLP 627

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            LIL     +       + L + ++   GR+  +      + TGR S      QN+P   
Sbjct: 628 KLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP--- 683

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A +G K++  D + IE R++A ++ 
Sbjct: 684 ---------------------IRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQ 722

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AF+ G+DI+  T A+     I++V+ E R   K +   L Y             
Sbjct: 723 DKALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMS-----AFGLA 777

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             + + +          FE +     +    +    E    + L G    L         
Sbjct: 778 KQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHL--------- 828

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                                                
Sbjct: 829 PEINARNGMRRKAAERAAINAPMQGTAADII----------------------------- 859

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                            T G      ++Q                        VHDE+V 
Sbjct: 860 -----KKAMILVDEWVETEGKDRVNLLMQ------------------------VHDELVF 890

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  +     V   +  LM +       +PL AE      +
Sbjct: 891 EVKEDALDEVTTKVRELMEQAAQ--LDVPLVAEAGFGNNW 928


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/708 (15%), Positives = 201/708 (28%), Gaps = 170/708 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------A 52
               ID ET S   +           A +   +   +           ++         A
Sbjct: 327 KFFSIDTETNSLNTMK----------AELVGISLCINPGRACYIPLCHKNSSVDQLSLAA 376

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLK 110
           +  DL   L D ++  +  N  ++  +F    GI+I       T +++          + 
Sbjct: 377 VLEDLKPILEDSSIKKLGQNLKYDAHIFLNY-GIEINGIS-DDTMLMSYVIESNQNHGMD 434

Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L  +    +   GK +                       + +    Y   D + 
Sbjct: 435 KLSAKYLGHNCKSYESLVGKGVNQL---------------TFDQVSVEDAVPYAAEDADV 479

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L+  +    D            E         I   G  ID  ++    ++I ++  
Sbjct: 480 TLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKLL 539

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
            L+E    L      +      L+  LF    I         +  T + +LS   +    
Sbjct: 540 LLEEKAFDLAGQPF-NLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSELALNYPL 598

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL   + +       + L + ++   GR+  +     A  TGR +      QN+P  
Sbjct: 599 PKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYNQAIA-ITGRLASSDPNLQNIP-- 655

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                    +    VR   IA +G K++ AD + IE R++A ++
Sbjct: 656 ----------------------IRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLS 693

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF N EDI+  T  + FN     VS EQR   KV                   
Sbjct: 694 KDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKV--------------INFGL 739

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+ +                                 A    +   A +   + + +K
Sbjct: 740 IYGMGVY------------------------------GLAKNLNIERAAAQNYIERYFSK 769

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  V +  +D  +                                 +     RRL   ++
Sbjct: 770 YPSVREYMEDTKQDARKNGY--------------------------VETHFGRRLWVPEI 803

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVL 626
            G             R    G       +Q  + D++   M                +++
Sbjct: 804 NGSNGMQRAGA---ERAAINGP------MQGTAADLIKMAMVGVKTWLDGQRHLKGKMIM 854

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E PDT        +  +M         +PL  +  E K +
Sbjct: 855 QVHDELVFEVPDTEVTEFKENIKRIMENVAQ--MDVPLIVDLGEGKNW 900


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 193/701 (27%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D+ET +   +          +A I   ++A                       +  +
Sbjct: 327 FAFDLETNNLDYI----------EAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQV 376

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + L   L D     V  N  F+  +     GI++   R   + + +          ++ 
Sbjct: 377 LARLKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIR-HDSMLESYVLDSTATRHNMD 434

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +    +M  GK                      +    +    Y   D + 
Sbjct: 435 SLALKYLQRTTITYEMVAGKGAKQL---------------PFNQVTIEKAAPYAAEDADI 479

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           + +L     P             + E  L  +   +   G +++ + +    + +A   K
Sbjct: 480 SLQLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLK 539

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L  G   +      ++  L+    +            T +++L    +    
Sbjct: 540 RLEQEAFELA-GESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPL 598

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L     S       + L   V+   GR+  +      + TGR S      QN+P  
Sbjct: 599 PQLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 655

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +LV AD + IE R++A ++
Sbjct: 656 ----------------------IRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLS 693

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AF   EDI+  T  + F TP++ V+ EQR   K +   L Y   A        
Sbjct: 694 EDEGLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAH-----GL 748

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + + +        F+ +   +++   +  Q  +    + L G    L        
Sbjct: 749 GRQLGINRTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYL-------- 800

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +                      +                                 
Sbjct: 801 -PEIHSRQTQRRNQAERTAINAPMQGSA-------------------------------A 828

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                 +  A   L  ++                      M           + VHDE+V
Sbjct: 829 DIIKRAMIHADRWLQEQKANAR------------------MI----------MQVHDELV 860

Query: 634 SETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +     ++  +   M         +PL  E      +
Sbjct: 861 FEVAEDKLEATIRAIRENMAAAAQ--LKVPLIVEIGSGTNW 899


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/728 (14%), Positives = 204/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET S   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDSLDSM----------SANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEPTEAETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELAERYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  D            E  L  +   
Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  I+ + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIEPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I + G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FITNKGYKIVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              E    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEERVEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA +   ++A                          +
Sbjct: 334 FAFDTETTSLDYM----------QAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D     V  N  +++ +     G  +   ++  T + +           + 
Sbjct: 384 MQKLGPILADAKKAKVGQNLKYDKSVLANA-GYQLNGIKF-DTMLESYVLNSVGTRHDMD 441

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +       G Y   D + 
Sbjct: 442 SLALKFLGHKNISFEDIAGKGKKQL---------------TFNQVELDKAGPYAAEDADI 486

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P             D E  L  +   I   G  ID  ++    + + +   
Sbjct: 487 TLRLHQVLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLL 546

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+++  ++      +      L++ LF    + +       +  T + +L         
Sbjct: 547 ELEKEAYEIAGEPF-NLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPL 605

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     S       + L   V+    R+  +      + TGR S      QN+P  
Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 662

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA++G K+V AD + IE R++A ++
Sbjct: 663 ----------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS 700

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFANG D++  T A+ F   +++V+ + R   K +                  
Sbjct: 701 QDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNF--------------GL 746

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 747 IYGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFER 776

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             GVL+  +   E  A                                    RRL   ++
Sbjct: 777 FPGVLEYMETTREKAAESGYVETIF--------------------------GRRLYLPEI 810

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-------DIVL 626
           K              R            +Q  + DI+ + M +     Y        +++
Sbjct: 811 KAQNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVHSWVYEQAPNTVKLLM 861

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       +    +C LM++  +    +PL  E  E   +
Sbjct: 862 QVHDELVFEIKTDCVDAYTKHICELMSQAAT--LDVPLIVEADEGDNW 907


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 196/700 (28%), Gaps = 163/700 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           L +D ET S  P+           A +   ++++ +            +E   +      
Sbjct: 362 LSLDTETTSTDPIR----------AELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFRP 411

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
              +  +M V  N  ++ ++     G+ +       T V        L  ++       L
Sbjct: 412 VFENREIMKVGQNIKYDMLVLANY-GVQLQG-PLFDTMVAHYVLQPELRHNMDYLAEIYL 469

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+     +   G     +                          EY   D + T +L  +
Sbjct: 470 NYQTIHIEELIGPKGKNQG--------------NMRDLPPASVYEYACEDADVTLKLKNK 515

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L    D           E  L  +   +   G RID + + +         K+++E++ +
Sbjct: 516 LEKELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQ 575

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
           L      +      +   LF    I +    ++     T + +L            IL  
Sbjct: 576 LAGTEF-NIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEH 634

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     ++ L + ++   GR+  +      + TGR S      QN+P         
Sbjct: 635 RGLKKLLGTYIDALPQLINPETGRIHTSFNQTV-TATGRLSSSNPNLQNIP--------- 684

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   I  +G     AD + IE R++A ++G+   I+
Sbjct: 685 ---------------IRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIE 729

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF  G+DI+  T +K +  P+++V++EQR+  K     + Y              G+ + 
Sbjct: 730 AFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIY--------------GISVF 775

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             ++ +                                     + +   +   +  V + 
Sbjct: 776 GLAERLNVD------------------------------RKEAKELIDGYFENYPHVKEY 805

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +                                    I     R+    D+    + +
Sbjct: 806 MDESIRIARERGY--------------------------IETIFKRKRYLPDINSRNAVV 839

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                   R            +Q  + DI+   M    +          ++L VHDE+  
Sbjct: 840 RGYA---ERNAINAP------IQGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNF 890

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                    V  +    M     +    PL A+    + +
Sbjct: 891 SVLPEEQEKVKQIVIEEMESA--YKMKAPLLADSGWGQNW 928


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 199/716 (27%), Gaps = 178/716 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L  D ET S  P+          QA +   + A             +             
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                 A  + L + L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                        +        
Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 542

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +AQ     +++I  L             L   LF   G+     ++     T   +L  
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFT-ISSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 661

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      I++    +       + L   ++   +   T     ++ TGR S     
Sbjct: 662 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 721

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G KL+ AD + IE 
Sbjct: 722 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 757

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +           
Sbjct: 758 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 808

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 809 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 833

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +  +  G+    +                                           R
Sbjct: 834 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 867

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R  Y D++          +   R            +Q  + DI+   M            
Sbjct: 868 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 918

Query: 621 GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 919 AARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/716 (16%), Positives = 196/716 (27%), Gaps = 178/716 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           L  D ET S  P+          QA +   + A                           
Sbjct: 413 LAFDTETNSLDPM----------QADLVGVSLALSPNEACYIPLAHTGAGDGLFSEGQLP 462

Query: 51  SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
             +P     + L   L D+  + V HN  +++++  +  GID+    + CT  ++     
Sbjct: 463 GQIPVRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAP--FDCTMCMSYALDA 519

Query: 105 --LPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +     L L           GK                         A +    
Sbjct: 520 GKNGHGMDELSVLHLGHQPIAFSEVTGKG---------------KGKVTFDKVALEPATH 564

Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P    E          R L  +   +  RG  ID  ++ +L  
Sbjct: 565 YAAEDADVTLRLWQVLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSS 624

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILS 266
             AQ   +++++I +L  G   +      +   LF   G+     +          ++  
Sbjct: 625 EFAQGAARIEDEIAELA-GERLNVGSPKQMGDILFGKMGLPGGTKTATGMWSTKATALEE 683

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            +         IL     S       + L   V+   R   T     A+ TGR S     
Sbjct: 684 LAEAGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAATTTGRLSSSDPN 743

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +A  G  LV AD + IE 
Sbjct: 744 LQNIP------------------------IRTEEGRRIRRAFVAEEGNLLVSADYSQIEL 779

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA IA       AF  G DI+  T ++ FN P+  +  E R   K +           
Sbjct: 780 RLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINF--------- 830

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 831 -----GIIYGIS------------------------------AFGLANQLGIPREEAGQY 855

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            K +  +  G+    ++                                    +     R
Sbjct: 856 IKRYFERFPGIRDYMEETKTFCREHGY--------------------------VETLFGR 889

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KN 620
           R  Y ++      +        R             Q  + DI+   M          K 
Sbjct: 890 RCHYPEIAAKNPSIRAF---NERAAINARL------QGTAADIIRRAMIRMEPALEKAKL 940

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK--NPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E P+    +   +    M     P+ A  +PLK +   AK +
Sbjct: 941 SARMLLQVHDELVFEVPEGEADATIPVVRQCMETASAPAVALAVPLKVDARAAKNW 996


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/722 (14%), Positives = 204/722 (28%), Gaps = 182/722 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET +  P+           A +   ++A  +          +             
Sbjct: 356 IAVDTETDALDPMR----------ANLVGISFALTNGEACYIPLAHKQAVKEMTQTDLFT 405

Query: 51  ------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
                                 + L   L + ++  +  N  ++  +F     I +    
Sbjct: 406 ESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHH-IQLNGVC 464

Query: 93  WICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           +  T + +         ++       L       +   GK                    
Sbjct: 465 F-DTMLQSYVLDSTGRHNMGALSERYLGHQVIEFESIAGKGKKQ---------------V 508

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRG 198
                A     EY   D + T +L + L               D E  L  +  T+   G
Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTMERNG 568

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----V 254
             ID   +LK  E IA+    L++ + +       +   T  L+  LF    + +     
Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAGAEF-NLASTKQLQEILFTKLALPIIAKTP 627

Query: 255 DMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
             +  T + +L        +   L++     +       + L   V+   GR+  +    
Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                               C+R   IA  
Sbjct: 688 V-TATGRLSSSDPNLQNIP------------------------IKNEEGRCIRQAFIARK 722

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G K++ AD + IE R++A ++ ++  I AF  G+DI+ +T A+ F  P+++V+ EQR   
Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   L Y        +      L + + +        F+ +   ++  + ++++  E 
Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
              + L G    L           +        +G   V                     
Sbjct: 838 GYVETLFGRRLYL---------PEINSSNAIRRKGAERVAINAPMQGTAADII------- 881

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                         +L    +  +                       N +Q         
Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAK 671
                      +++ VHDE+V E  +         + SLM         +PL  +     
Sbjct: 899 -----------MIMQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945

Query: 672 RY 673
            +
Sbjct: 946 NW 947


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 195/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           + ID ET S   +          +A +   ++A +                         
Sbjct: 340 IAIDTETTSLNYM----------EAKLVGISFAIEAGKAAYLPLGHDYLDAPKQLDQAEA 389

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +  +  V  N  ++  +F   +GI +    +  T + +          ++ 
Sbjct: 390 LAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMD 447

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                    +    ++   Y   D + 
Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQIDLEIAAPYAAEDADI 492

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   I   G  ID  ++ +  E +A+   
Sbjct: 493 TLRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTID 552

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +      L+   F   G  +       +  T + +L    +    
Sbjct: 553 ELEQKAFEIAGEKF-NLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEDVLVELALDYPL 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V++  GR+  +     A  TGR S      QN+P  
Sbjct: 612 PKIILQHRSLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANA-ATGRLSSSEPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  GKK++ AD + IE R++A ++
Sbjct: 669 ----------------------IRTEEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLS 706

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F+   D+V+ EQR   K +   L Y            
Sbjct: 707 QDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +     +    + +  +      L G    L        
Sbjct: 762 AKQLDISRPEAQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYL-------- 813

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                               
Sbjct: 814 -PAIKDRNAMRRQAAERAAINAPMQGTAADII---------------------------- 844

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +      T      E I+Q                        VHDE+V
Sbjct: 845 ------KKAMINIAHWIATETRGEIEMIMQ------------------------VHDELV 874

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E        +   +C LM    S    + L AE      +
Sbjct: 875 FEVDSDKAEEMREKVCQLMADAVS--LDVELLAEAGIGDNW 913


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 773 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 95/708 (13%), Positives = 199/708 (28%), Gaps = 165/708 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           + +D ET S   +           A +   +               +             
Sbjct: 351 VAVDTETTSLDEMR----------AELVGISLCVQAGTACYIPLGHRQGGGDLFGSSALT 400

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L D+ ++ +  N  ++  +  +   + I       T +++    
Sbjct: 401 EGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKILAR---LGISVAPIDDTMLMSYAMH 457

Query: 105 ---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157
                  +       L       K  +  GK+ +         +  Y    A+  ++ W+
Sbjct: 458 AGLNSHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDRVPIDQAVAYAAEDADITLRLWE 517

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           LF     R    T  +++ L      ER L  +   +   G ++D D + ++    AQ+ 
Sbjct: 518 LFKPQLHRAHVTT--VYETL------ERPLVPVLAQMEMAGIQVDRDTLSRMSNAFAQKM 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQL 273
             L+ +I  +      +      L   LF    +   +  +     T   +L        
Sbjct: 570 AGLEAEIHDMAGEKF-NVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLEDLATEHE 628

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +L+    S       + L + ++   GR+  +    GA  TGR +      QN+P 
Sbjct: 629 LPGRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSLTGA-VTGRLASTDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G++LV  D + IE R+LA +
Sbjct: 687 -----------------------VRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHV 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A      +AF  G+DI+  T ++ FN P+D+++ + R   K +                 
Sbjct: 724 ADIPALKQAFREGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINF--------------G 769

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A   ++  +A +     +  
Sbjct: 770 VIYGISGF------------------------------GLARNLRIPRSAAQGFIDRYFE 799

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  G+     D                                    +     R++    
Sbjct: 800 RFPGIKGYMDDTVAFAKANG--------------------------FVQTLFGRKIHTP- 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628
              + +          R            +Q  + D++   M             ++L V
Sbjct: 833 ---EINARGPGAGFAKRAAINAP------IQGTAADVIRRAMVRMPAAIAGIDAKMLLQV 883

Query: 629 HDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
           HDE++ E  +    ++  +   +M     P+    + L  E      +
Sbjct: 884 HDELLFEVAEDAVDTLIPIAREVMETACDPAVHLSVRLTVEAGHGANW 931


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/713 (14%), Positives = 193/713 (27%), Gaps = 174/713 (24%)

Query: 1   MSKL------FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---- 50
           M K+       +D ET S   L           A +   + +             +    
Sbjct: 361 MKKIEAAELTAVDTETTSLDALA----------AELVGISLSVKPGEACYIPVAHRNGEA 410

Query: 51  ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-- 104
                 +   +  +L   + + V  N  ++  +F     I +    +  T + +      
Sbjct: 411 QLSRELVLKRMKSWLESSSHLKVGQNLKYDIHIFANY-DIHLEGIAF-DTLLESYVLESH 468

Query: 105 LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           LP ++ +     L       +   GK +                         Q+   Y 
Sbjct: 469 LPHNMDSLAERHLGLKTIRYEEVCGKGVHQIG---------------FDQVDLQIATNYA 513

Query: 164 KRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             D + T  L   L P               E    L+   +   G RID  L+ K  + 
Sbjct: 514 AEDADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQ 573

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHS 268
           + +   +L+ +I +L      + +    +   LF    + +       +  T + +L   
Sbjct: 574 VGKRLLELEGEIHRLAGQPF-NIQSPKQIAEILFGQLELPIVKKTPSGAPSTDEEVLQKL 632

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
                    IL+  + +      +  L        GR+        A  TGR +      
Sbjct: 633 AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRIHTNFSQATA-VTGRLASSDPNL 691

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R   I ++G KL+ AD + IE R
Sbjct: 692 QNIP------------------------VRTEEGRRIREAFIPADGCKLLSADYSQIELR 727

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           ++A IA ++  + AF  G+D++  T A+ F  P+D V+ EQ                   
Sbjct: 728 IMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDDVNSEQ------------------- 768

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                                      + +  +  L         A    +   A +   
Sbjct: 769 -------------------------RRYAKVINFGLIYGMSAFGLAGNLGIERAAAQNYI 803

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             +  ++ GV Q  +                                           RR
Sbjct: 804 AKYFDRYPGVAQYMERTRLEARENGYVETVF--------------------------GRR 837

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621
           L   ++KG             R            +Q  + D++   M             
Sbjct: 838 LWLPEIKGSNGPRRQGA---ERAAINAP------MQGTAADLIKLAMIAVEDWLEKEQLK 888

Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++L VHDE+V + P      +   L  LM         +PL         +
Sbjct: 889 TKMLLQVHDELVFDVPLDEIDLLQAKLPDLMCHVAQ--LKVPLVVSIGIGDNW 939


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 99/706 (14%), Positives = 204/706 (28%), Gaps = 171/706 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +  ID ET S         +  A    +   + A+D +                      
Sbjct: 346 RFAIDTETTSLD-------YRVA---EMVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQ 395

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L ++ V  + H+  ++  +F    GI++    +  T + +           +
Sbjct: 396 VLAQIKPILENDQVEKIGHHLKYDAHIFANH-GIELKGW-FFDTMLASYVLNSVATRHGM 453

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   ++ +    ++   Y   D  
Sbjct: 454 DDVARLYLSHLTTTFEQVAGKGAKQ---------------KSFNQIELEVASPYAAEDAH 498

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L                 E  +  +   + + G R+D   + +L    A+  
Sbjct: 499 VTYRLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTM 558

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           ++L++  +++  G   +      +   LF   GI     +      T +SIL        
Sbjct: 559 QELEQQAMEMA-GETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEKIEHP-- 615

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL   + +       + L +  + S  R+  +      + TGR S      QN+P 
Sbjct: 616 IAAVILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQA-LTATGRLSSSDPNLQNIP- 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                    G     +R   IA  G+ L+ AD + IE R++A  
Sbjct: 674 -----------------------IRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHF 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +D  + AF +G+D++  T A+     ++ V+ +QR   K +                 
Sbjct: 711 SQDDALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FG 756

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +        +   K +  
Sbjct: 757 LLYGMSEF------------------------------GLIRQLGFTRQESQDYIKQYFH 786

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ G+ +  +   +                                 +     RRL   D
Sbjct: 787 RYPGIYEYMQRTRQLALEQG--------------------------FVDTLFGRRLYTPD 820

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTV 628
           +      +        R             Q  + DI+   M    K    +   ++L V
Sbjct: 821 IDARNMMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQARLLLQV 871

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +     +   L  +M         +PL  E  +   +
Sbjct: 872 HDELVFEVDENIADELAPQLAEVMESVVE--ISVPLLVEVGKGCNW 915


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/723 (15%), Positives = 203/723 (28%), Gaps = 187/723 (25%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS----- 51
             D ET S  P+           A +   + A  D                   ++     
Sbjct: 446  FDTETTSLDPMR----------ADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDL 495

Query: 52   -------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
                            S L   L D +V+ VA N  ++ ++ K+     I  + +  T +
Sbjct: 496  LGGGLVENQVPMREALSRLKNLLEDPSVLKVAQNLKYDYLVMKRH---GIAMQSFDDTML 552

Query: 99   LARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            ++           + +     L  +    K   G                   + +    
Sbjct: 553  MSYVVDAGNGMHGMDSLSERWLGHTPIPYKDIAGTG---------------KASVSFDFV 597

Query: 155  AWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLD 204
                   Y   D + T  L+  L P              ER L  +   + +RG  +D  
Sbjct: 598  DIDKATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQ 657

Query: 205  LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GT 260
            ++ +L   +AQ    L+++I +L             L   LF   G+     ++     T
Sbjct: 658  ILSRLSGELAQGAAALEDEIYRLAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWST 716

Query: 261  LKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              S+L             I++    +       + L   V  + +   T     A+ TGR
Sbjct: 717  SASVLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAATTTGR 776

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
             S      QN+P                                +R+  IA+ G KLV A
Sbjct: 777  LSSSEPNLQNIP------------------------VRTAEGRRIRTAFIATPGHKLVSA 812

Query: 380  DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            D + IE RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +    
Sbjct: 813  DYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINF-- 870

Query: 440  GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                            G+     +  +                                 
Sbjct: 871  ------------GIIYGISAFGLANQLSIE------------------------------ 888

Query: 500  GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             +      K +  +  G+    ++                                    
Sbjct: 889  RSEAGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIF--------------------- 927

Query: 560  IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618
                  RR  Y D++     +        R            +Q  + DI+   M     
Sbjct: 928  -----GRRAHYPDIRSSNPSMRAF---NERASINAP------IQGSAADIIRRAMVKMEP 973

Query: 619  -----KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEA 670
                 K    ++L VHDE++ E  +     ++  + S+M      A    +PLK +   A
Sbjct: 974  ALDEAKLAARMLLQVHDELIFEVEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAA 1033

Query: 671  KRY 673
            + +
Sbjct: 1034 QNW 1036


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 92/693 (13%), Positives = 194/693 (27%), Gaps = 144/693 (20%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +             E   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E V+ V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     +                G+ +   ++   
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISVFGLAER-- 819

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                         +     + +   +   +  + +      + 
Sbjct: 820 ----------------------------MNVDRKEAKELIDGYFETYPQIKEYMDKSIDL 851

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                          +I     R+    D+    S +       
Sbjct: 852 AR--------------------------GQGYIETIFGRKRYLPDINSRNSVVRGYA--- 882

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641
            R            +Q  + DI+   M    +          ++L VHDE+         
Sbjct: 883 ERNAINAP------IQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEK 936

Query: 642 FSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             V  +    M     +   +PL+A+      +
Sbjct: 937 EKVQKIVIEEMENA--YRMQVPLRADCGCGSNW 967


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          QA +   +++                          +
Sbjct: 334 FAFDTETTSLDYM----------QAQLVGMSFSVKAGEAAYLPVAHDYPDAPEQLSLEFV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D     V  N  +++ +     G ++   ++  T + +           + 
Sbjct: 384 MQKLGPILADANKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMD 441

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +         Y   D + 
Sbjct: 442 SLALKYLGHKNISFEDIAGKGKKQL---------------TFNQIELDKAAPYAAEDADI 486

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   I   G  ID  ++    + + +   
Sbjct: 487 TLRLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAHSQRLGERLI 546

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+++  ++      +      L++ LF    + +       +  T + +L         
Sbjct: 547 ELEKEAFEIAGEPF-NLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPL 605

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     S       + L   V+    R+  +      + TGR S      QN+P  
Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 662

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA++G K+V AD + IE R++A ++
Sbjct: 663 ----------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS 700

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFANG D++  T A+ F   +D V+ + R   K +                  
Sbjct: 701 QDKGLLNAFANGLDVHSATAAEVFGVDLDDVTTDMRRKAKAVNF--------------GL 746

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 747 IYGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFER 776

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             GVL+  +   E  A                                    RRL   ++
Sbjct: 777 FPGVLEYMETTREKAAENGYVETIF--------------------------GRRLHLPEI 810

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-------DIVL 626
                          R            +Q  + DI+ + M +  +  Y        +++
Sbjct: 811 NARNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVNQWVYEQAPNTVKLLM 861

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       +    +C LM++  S    +PL  E  E + +
Sbjct: 862 QVHDELVFEIKTDCAEAYTKQICELMSQAAS--LDVPLIVEADEGENW 907


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 407 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 456

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 457 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 513

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 514 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 558

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 559 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 618

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 619 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 677

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 678 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 737

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 738 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 773

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 774 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 825

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 826 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 849

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 850 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 883

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 884 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 934

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 935 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 991


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              IDIET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDIETTSLD-------YRIA---EMVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  T + +           +
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDTMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L+     +L P  + E         +  +   + + G R+D   +  L    A+ R
Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTR 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++ D    +      +   LF   GI     +      T +S+L        
Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKVLPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  +   +
Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGLNW 919


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 201/706 (28%), Gaps = 169/706 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +    +A                          +
Sbjct: 351 FAFDTETDGLDTLT----------ANLIGLCFAVKPGEAAYLPVGHDYLDAPDQLDRATV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   + D T+  +  N  F+R + K+   I++    +  T + +           + 
Sbjct: 401 LAALKPVMEDPTIGKIGQNLKFDRGVLKRY-DIELAGIAF-DTMLESYVLDSVAGRHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +    +   GK                      +  A +    Y   D + 
Sbjct: 459 SLAERFLQHTTVSFEEIAGKGRNQL---------------TFNQIAMEQAASYAAEDADV 503

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L ++L P  +            E  L  +   I   G  ID  ++      +A+  +
Sbjct: 504 TLRLHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHSVELAKRLE 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+ +  +L +    +   T  L+  L+    + ++  +      T + +L+   +    
Sbjct: 564 ELEGEAHQLAEEPF-NLSSTKQLQEILYDKQKLPVLKKTPGGAPSTNEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L + ++   +   T      + TGR S      QN+P   
Sbjct: 623 PKLILEYRGLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 679

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA     +V AD + IE R++A +A 
Sbjct: 680 ---------------------VRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLAR 718

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFA G+DI+  T A+ F   ++KV+++QR   K +                   
Sbjct: 719 DPGLLNAFAAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINF--------------GLI 764

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +  +  +     +  ++
Sbjct: 765 YGMS------------------------------AFGLARQLSVPRSEAQKYMNLYFERY 794

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL+  +                                    ++     RRL   D+ 
Sbjct: 795 PGVLEYMERTRRQA--------------------------SDRGYVETLDGRRLYLLDIH 828

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628
                       + R            +Q  S DI+   M               +++ V
Sbjct: 829 SRN---GMRKKGVERAAINAP------MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQV 879

Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E       S    + +LM         +PL+ +    + +
Sbjct: 880 HDELVFEVQRDAVESAKARIKALMEGCFK--LDVPLQVDVGVGENW 923


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/702 (16%), Positives = 195/702 (27%), Gaps = 152/702 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  D R+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F T  + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              +     +   G     +      +A  +     + + R   +    L          
Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASLW--------- 876

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                              D L             +++ VHDE+
Sbjct: 877 -----------------------------------DCLK----------SKLIMQVHDEL 891

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E P+     V   L  +M K       +PL AE    + +
Sbjct: 892 VLEVPEAELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 97/722 (13%), Positives = 193/722 (26%), Gaps = 185/722 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
              D ET     L           A +   + A                           
Sbjct: 352 FSFDTETDGLDTLT----------ANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSST 401

Query: 50  ------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
                       +  + + L   L D+ +  +  N  F++ +  +  GID+    +  T 
Sbjct: 402 VSPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIAF-DTM 459

Query: 98  VLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           + +           + +     L       +   GK                        
Sbjct: 460 LESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQL---------------TFDQ 504

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRID 202
                   Y   D + T  L + L    + +             L  +   I   G  ID
Sbjct: 505 IPLAQASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLID 564

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSE 258
             ++ +    + Q   +L+    +L  G   +      L   L+    +         + 
Sbjct: 565 TTILAEHSRELTQRLAELEVQAHELA-GEAFNLSSPKQLGAILYEKLQLPVIKKTPKGAP 623

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T + +L+   +      LIL     +       + L + ++   R   T      + TG
Sbjct: 624 STNEEVLAELALDYPLPKLILEHRGLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVTATG 683

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   IA  G +++ 
Sbjct: 684 RLSSSDPNLQNIP------------------------VRNEEGRRIRQAFIAPEGYRILA 719

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ +   ++AF++G DI+  T A+ F  P+D+V+ EQR   K +   
Sbjct: 720 ADYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINF- 778

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                   + +  +
Sbjct: 779 -------------GLIYGMS------------------------------AFGLSRQLAI 795

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
             +  +     +  ++ GV +  +   +                                
Sbjct: 796 PRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGY------------------------- 830

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            +     RRL   D+         +     R            +Q  + DI+ + M    
Sbjct: 831 -VSTLDGRRLYLPDIHSRNV---NSRKAAERAAINAP------MQGTAADIIKKAMIAID 880

Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAK 671
                 K    +++ VHDE+V E   +        + +LM         +PL+ +     
Sbjct: 881 AWLRQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIRNLMEGCMQ--LDVPLQVDIGTGS 938

Query: 672 RY 673
            +
Sbjct: 939 NW 940


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   L           A +   + A                          +
Sbjct: 353 FAFDTETDSLDVL----------SANLVGISCADAPGQAYYIPLAHDYLDAPAQLDREWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE V  V  N  ++  +  +  GI +    +  T + +           + 
Sbjct: 403 LARLQPLLEDEKVAKVGQNLKYDIGVMARH-GIILRGVAF-DTMLESYVLNSVAGRHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +    +   EY   D + 
Sbjct: 461 SLAARHLDHKTITFEEVAGKGKGQL---------------TFNQIPLEQAAEYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +RL P+ + E             L  +   +   G  ID  ++ +  + +A    
Sbjct: 506 TLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDSTILGQHSQELAVRLN 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSIL-SHSNITQL 273
            L++    L D    +   T  L+  LF    + ++  +      T + +L   +     
Sbjct: 566 ALEQQAHTLADEPF-NLSSTKQLQSILFDKQQLPILKKTPGGAPSTNEEVLVELAEQGYE 624

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL+    +       + L + VS   GR+  +      + TGR S      QN+P 
Sbjct: 625 LPQVILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 682

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G K+V AD + IE R++A +
Sbjct: 683 -----------------------VRSDEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHL 719

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   ++AFA G+DI+  T A+ F  P++ V+ +QR   K +                 
Sbjct: 720 SGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF--------------G 765

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 766 LIYGMS------------------------------AFGLARQLNIGRNEAQRYMDLYFE 795

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +   +  +                              +     RRL    
Sbjct: 796 RYPGVLAYMERTRQQASEQGY--------------------------VETLDGRRLYLP- 828

Query: 573 VKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
              + +  N    +   R            +Q  + DI+   M               ++
Sbjct: 829 ---EINARNAMRRKAAERAAINAP------MQGTAADIIKRAMIAVDAWLQQSQPQVRMI 879

Query: 626 LTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E P+      V  + +LM    S A  +PLK +    + +
Sbjct: 880 MQVHDELVFEVPEALVDEVVSHVRTLMEG--SLALAVPLKVDIGCGENW 926


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 169/707 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   L           A I   +++ +                       A+
Sbjct: 353 VALDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
              L  +L D +   +  +  ++R +F     I +       T + +    +  P +L +
Sbjct: 403 LERLKPWLEDGSRAKLGQHVKYDRHVFANH-DIGVRGY-VHDTMLQSYVLEVHKPHNLAS 460

Query: 112 ACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                   +    +   GK                           +    Y   D + T
Sbjct: 461 LAERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVEQAAAYSCEDSDQT 505

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            ++ + L PL +           E +   +   I   G  ID   + +    + Q   KL
Sbjct: 506 LDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276
           +++   +      +      L    F   G+ +V  +      T + +L           
Sbjct: 566 EQEAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPA 624

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL   + S       + LS+      GR+        A  TGR S      QN+P    
Sbjct: 625 KILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP---- 679

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G+ +  AD + IE R++A ++G+
Sbjct: 680 --------------------IRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           D  ++AF  G D++  T A+ F   +D+VS EQ                           
Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQ--------------------------- 752

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +   A       +  ++ 
Sbjct: 753 -----------------RRYAKVINFGLIYGMSSFGLARNLGIDNKAAAAYIDRYFQRYP 795

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q   +                                          RRL   ++  
Sbjct: 796 GVKQYMDETKASAKARGYVETVF--------------------------GRRLYLPEINS 829

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                  A     R            +Q  + D++ + M          K    +++ VH
Sbjct: 830 PNGPRRGAA---ERAAINAP------MQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVH 880

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V E P+     +   +  LM         +PL AE      + K
Sbjct: 881 DELVFELPEEEAGWLRTEIPRLMAGVAE--LKVPLLAEVGTGPNWEK 925


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/710 (14%), Positives = 200/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +             T +            
Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDD 398

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L D+ ++ +  N  ++  +F +     I       T +L+  
Sbjct: 399 LAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN---GIDVTPIDDTMLLSYA 455

Query: 103 NG---LPSSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L+      K   G  K+ I        D+ PY    A+  ++ 
Sbjct: 456 LHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDATPYAAEDADITLRL 515

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ F     +    T  +++ L      ER L  +   +   G ++D D + ++    +Q
Sbjct: 516 WQQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQHGIKVDRDTLSRMSNAFSQ 567

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF    +      +     T   IL      
Sbjct: 568 KMAALEAEIHELA-GETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILEDLATE 626

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L E +    GR+  +    GA+ TGR +      QN+
Sbjct: 627 HTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  G  L+  D + IE R+LA
Sbjct: 686 P------------------------VRSEEGRRIREAFVADEGNVLLSLDYSQIELRILA 721

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +AG D   +AFA+G DI+  T ++ F+ P+++++ + R   K +               
Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAIN-------------- 767

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 768 FGVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRY 797

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+ Q   D                                    +     R++  
Sbjct: 798 FERFPGIRQYMDDTVNFAKEHGY--------------------------VQTLFGRKIHT 831

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + +      S   R            +Q  + D++   M             ++L
Sbjct: 832 P----EIAAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPEAIAHLPARMLL 881

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
            VHDE++ E P+      +     +M      A    + L  +    + +
Sbjct: 882 QVHDELLFEVPEDHVEETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/703 (15%), Positives = 195/703 (27%), Gaps = 162/703 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMP 54
            ID ET S  P+          QA +   +   +                     +  + 
Sbjct: 338 SIDTETTSLIPM----------QAQLVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVL 387

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             +  +L D +   V  N  ++  +F    G+++       T + +          + + 
Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHIFANH-GVNLRGI-VHDTLLESYVFESHRSHDMDSL 445

Query: 113 C-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               LN      +   GK    I         +                  EY   D + 
Sbjct: 446 ALRHLNRKTITFQEVCGKGASQIGFEQVEIGRAT-----------------EYAAEDADI 488

Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L +R+ P               E    ++ Q I   G  ID DL+ K    + +   
Sbjct: 489 TLQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRML 548

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +++++  +L +    +      +    F    +         S  T + +L         
Sbjct: 549 EIEQNAYELAEQPF-NLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKLAEDYPL 607

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     S       + L + +    GR+        A  TGR +      QN+P  
Sbjct: 608 PKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-- 664

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G  +V AD + IE R++A I+
Sbjct: 665 ----------------------IRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHIS 702

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++  ++AFA+GEDI+  T A+ F      V  EQR   KV+   L Y            
Sbjct: 703 GDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMS-----AFGL 757

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +++ +        F  +   + +    + +         + G    L        
Sbjct: 758 AGNLGIERSAAQSYIERYFHRFAGVKRYMDETRLEAKARGYVQTVFGRRLWL-------- 809

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                                              
Sbjct: 810 -PEINSPNGPRRQGAERAAINAPMQGT--------------------------------- 835

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                 KL    VQ               K    +++ VHDE+V
Sbjct: 836 -----------------AADLIKLAMIAVQG---------WLETEKLQSKMIMQVHDELV 869

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E P+T    V   L  LM         +PL AE      + K
Sbjct: 870 LEVPETELPLVREKLPELMRHVAQ--LKVPLIAEVGVGNNWDK 910


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/728 (14%), Positives = 203/728 (27%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                       +L   L    V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSVEIEQRLSELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              E    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDDN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 221/683 (32%), Positives = 337/683 (49%), Gaps = 49/683 (7%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLG---IDIPS 90
           +A DD PV  WD T  + MP +L + + D        N  +F+R++ K         +P 
Sbjct: 5   WAIDDGPVGTWDVTTGAPMPVELDEAI-DAADEYWWQNGGMFDRVVLKHAAPEIYARMPE 63

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDCTR 149
            +W  T V A  +GLP  L   C   N      K +EG  LI  FCK    +S     TR
Sbjct: 64  HKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRRATR 123

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRL----IPLSDGERDLWLLDQTINDRGYRIDLDL 205
             H + W  F  Y   D+ A R + K +     P +  E  LW  DQ IN RG ++D++L
Sbjct: 124 ETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMDVEL 183

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                  I + +K+L    V+LTDG +  + Q   L  +L     +DL DM + TL+  +
Sbjct: 184 AEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLERRI 243

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +  ++    ++L+  RL ++ ++  K  TL   VS+DGRLRG +QF GA RTGR +  +F
Sbjct: 244 NDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAHRLF 303

Query: 326 QPQNLPRQERSEEILTQTIQALNRGET-------------------IADPLGLASDCVRS 366
           QP N+PR +    +    +   + G+                      + +GL ++ VR 
Sbjct: 304 QPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANVVRG 363

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-----DIYVTTYAKAFNTPI 421
            I+A +GK+L V+DL+ IE R  AW+AGE WK++AF + +     D+Y   YA+AF   +
Sbjct: 364 TIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVAV 423

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS---TSTFEDWEQA 478
           + V K  R +GKVMELAL Y+GG   F T      +DL      V +   T   E   +A
Sbjct: 424 EAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIVREA 483

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                W   +     +   +   AC+++K+ WR  H      W +L +     +   G  
Sbjct: 484 RGMWEWAVKKRRTLGLPQDVFI-ACDILKRLWRRAHPQTSSYWPELRDAAILAISSPGKT 542

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--NTATSQLMRERT 592
                 +  R+++RR    + + LPS R+L Y   +    G+ SY+  N  T +  R +T
Sbjct: 543 -----VHARRVILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKWQRTKT 597

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMT 652
           YGGK+ EN+ QA++RD+L          GYDIVL++HDE+++E PD   +S   L SL+ 
Sbjct: 598 YGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADELSSLIA 657

Query: 653 KNPSWAKGLPLKAEGYEAKRYRK 675
             P+WA+G+PL A G+ A RY+K
Sbjct: 658 TAPAWAEGMPLAAAGFSAYRYKK 680


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 200/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAQDAYYVPLAHTYENAPQQLNREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  T + +           +
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDTMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVATHYAAEDAH 502

Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L+     +L P  + E         +  +   + + G R+D   +  L    A+  
Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++ D    +      +   LF   GI     +      T +S+L        
Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   + ++M         +PL  E  +   +
Sbjct: 877 DELVFEVDQNIADELSKQIANVMESVLE--ISVPLVVEVGQGLNW 919


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 197/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          Q  +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QGELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 191/707 (27%), Gaps = 173/707 (24%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPS 55
           ID ET S   +           A I   +++ +         T              + +
Sbjct: 365 IDTETTSLDEMV----------AQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLA 414

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC 113
            L  +L +     +  +  ++R +F    GI++       T + +    +  P  L +  
Sbjct: 415 KLKPWLENPEKKKLGQHIKYDRHVFANH-GIEVEGYA-HDTMLQSYVLEVHKPHGLASLA 472

Query: 114 LA-LNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L  S    +   GK    I+        +                  EY   D + T
Sbjct: 473 ERHLGRSGISYEDLCGKGAHQISFSQVDIAKAA-----------------EYSCEDSDQT 515

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            ++ + L P  +           E D       +   G  ID   +      +      L
Sbjct: 516 LDVHRTLWPQLEANEKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMAL 575

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++  ++      +      +    F   G+         +  T + +L           
Sbjct: 576 EQEAYEIAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPA 634

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL     S       + L +  +   GR+        A  TGR S      QN+P    
Sbjct: 635 KILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP---- 689

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G  +  AD + IE R++A I+G+
Sbjct: 690 --------------------IRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGD 729

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AF  G D++  T A+ F +  D+VS EQ                           
Sbjct: 730 ESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQ--------------------------- 762

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +   A     + + A++ 
Sbjct: 763 -----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAASYIERYFARYP 805

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV     +                                          RRL   ++  
Sbjct: 806 GVKAYMDETKALAKEQGYVETVF--------------------------GRRLYLPEINS 839

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                        R            +Q  + D++   M          K    +++ VH
Sbjct: 840 PNGPRRGGA---ERAAINAP------MQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVH 890

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V E P+     V   +  LM      A  +PL AE      + K
Sbjct: 891 DELVFEVPEAEVEWVRAEIPRLMAGVA--ALKVPLLAEIGIGPNWDK 935


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 391 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 440

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 441 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 497

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 498 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 542

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 543 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 602

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 603 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 661

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 662 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 721

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 722 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 757

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 758 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 809

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 810 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 833

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 834 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 867

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 868 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 918

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 919 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 975


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/724 (13%), Positives = 197/724 (27%), Gaps = 184/724 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
            +  D ET S   +           A +   + A                          
Sbjct: 347 TVAFDTETTSLDCMR----------ADLVGVSLAVAPGKACYIPLRHVGRQAQGDLLGAG 396

Query: 50  -----QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                   +P     + L   L +  V+ +AHN+ ++ ++  +     I       T  L
Sbjct: 397 PAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCL 456

Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           +           L       L  +    +   GK                          
Sbjct: 457 SYVLEGGLHGHGLDELATLHLGHTNIKFEEVCGKGKTQIG---------------FAEAP 501

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDL 205
                 Y   D + T  L   L P    ER           L  +   +   G ++D  +
Sbjct: 502 IDKACAYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTI 561

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261
           +  +    A+    L+ +I +       +      L   LF   G+      +     T 
Sbjct: 562 LRDMSADFAKRLVTLEGEIHEQAGEPF-NVGSPKQLGEILFDKMGLAGGKKGKTGAYGTG 620

Query: 262 KSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTG 318
             +L          A+ ++  R  +   +    + L E ++   GR+  +    GA  TG
Sbjct: 621 ADVLETLAAEGSDFARKVLDWRQIAKLKST-YTDALVETINAETGRVHTSYSMVGA-ATG 678

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R+  +A  G  L+ 
Sbjct: 679 RLSSNDPNLQNIP------------------------IRTEEGRKIRTAFVAEPGNVLLS 714

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R++A IAG +   KAF +G DI+  T ++ F  P+ +++ + R   K +   
Sbjct: 715 VDYSQIELRLVADIAGIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINF- 773

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     ++ + ++                             
Sbjct: 774 -------------GIIYGISGFGLARQLSTSQA--------------------------- 793

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +    A+  +  G+     ++                                  
Sbjct: 794 ---EAQAYINAYFERFPGIRDYMTEMKTFAREHG-------------------------- 824

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
            +     R++    ++     +        R            +Q  + D++   M    
Sbjct: 825 FVETKFGRKVHIQAIRDKNPAMRNFG---ERAAINAP------IQGTAADVIKRAMVRLP 875

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT--KNPSWAKGLPLKAEGYE 669
                 ++   ++L VHDE++ E P+    +   L   +M     P     +PL AE   
Sbjct: 876 VALDKAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGAAAPQLNLSVPLIAEAGW 935

Query: 670 AKRY 673
            K +
Sbjct: 936 GKSW 939


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/728 (15%), Positives = 210/728 (28%), Gaps = 185/728 (25%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM------ 53
           M++L  +D ET +            A QA +   ++  ++          +  +      
Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKIAQPTQV 402

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      + L   L +  +  +  N  ++  +F +  GI+
Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARY-GIE 461

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++ N     L       +   GK               
Sbjct: 462 LQGVAF-DTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEELAGKGKHQL---------- 510

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                           EY   D E T +L + L                 E  L  +   
Sbjct: 511 -----TFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSR 565

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  ID   +L     I Q  K+L+  + +   G + +   T  L+  LF   G+ +
Sbjct: 566 VERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEA-GEVFNLASTKQLQEILFNKLGLPI 624

Query: 254 ----VDMSEGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L     +      L++     S       + L + ++   GR+  
Sbjct: 625 LKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHT 684

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 685 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEQGRRIRQA 719

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G  ++ AD + IE R++A +A +   IKAFA G+DI+ +T A+ F  P++ V+ E
Sbjct: 720 FIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSE 779

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +   L +++
Sbjct: 780 QRRSAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIRE 834

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
           +  E    + L G    L           +    +   +      +      +A  +  V
Sbjct: 835 KAAEKGYVETLFGRRLYL---------PEINSSNQMRRKAAERVAINAPMQGTAADIIKV 885

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +  R+                                                 
Sbjct: 886 AMIGIDQAVRNCE----------------------------------------------- 898

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
            DI    M           + VHDE+V E            + + M K       +PL A
Sbjct: 899 -DI---AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIA 942

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 943 EVGVGSNW 950


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTDSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 LP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGRHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGISFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              +    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 210/709 (29%), Gaps = 166/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET     +             +   +   +         T +             
Sbjct: 352 VAVDTETTGFDEMV----------VDLVGISLCVEPGRACYIPLTHKSGSSDDLFGSDDL 401

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D +++ +  N  ++  +F +  GID+       T +++   
Sbjct: 402 ADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAP--IDDTMLMSYAM 458

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       LN +    K  +  GK+ I        D+  Y    A+  ++ W
Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     +    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
              L+ +I +L  G   +      L   LF   G++     +     T   IL       
Sbjct: 571 MAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDLATEH 629

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L+    S       + L + ++   GR+  +    GA+ TGR +      QN+P
Sbjct: 630 ALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNIP 688

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +   G  L+  D + IE R+LA 
Sbjct: 689 ------------------------IRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAH 724

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG D   +AFA G+DI+  T ++ FN P+++++ + R   K +                
Sbjct: 725 VAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------------F 770

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 771 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 800

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +   +                                   H+     R++   
Sbjct: 801 ERFPGIRRYMDETVAFAKEHG--------------------------HVQTLFGRKIHTP 834

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + S          R            +Q  + D++   M             ++L 
Sbjct: 835 ----EISAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLPARMLLQ 884

Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
           VHDE++ E P+     ++ T   +M      A    + L  +    + +
Sbjct: 885 VHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKLVVDAGRGQNW 933


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLSELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              +    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 197/706 (27%), Gaps = 169/706 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRATV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE ++ +  N  F++ + ++   ID+    +  T + +           + 
Sbjct: 403 LALLKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 461 SLAERYLKHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L                    L  +   I   G  ID  ++ +  + +     
Sbjct: 506 TLHLHQTLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    +L      +   T  L+  L+    + +       +  T + +L+   +    
Sbjct: 566 ELEIQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   ++   +   T      + TGR S      QN+P   
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSG 720

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  + AFANG DI+  T ++ F   +DKV+ EQR   K +                   
Sbjct: 721 DEGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINF--------------GLI 766

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   + +  +  +  +     +  ++
Sbjct: 767 YGMS------------------------------AFGLSRQLNIPRSESQKYMNLYFERY 796

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV    +   +  A                              +     RRL   D+ 
Sbjct: 797 PGVQDYMERTRQQAAEHGY--------------------------VSTLDGRRLYLPDIH 830

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628
              +    A     R            +Q  + DI+ + M               +++ V
Sbjct: 831 SRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKDAPKVKMIMQV 881

Query: 629 HDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  D+     +  +  LM         +PL+ +      +
Sbjct: 882 HDELVFEIDDSIVEESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 190/702 (27%), Gaps = 160/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +           A +   ++  ++                       +
Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L    ++ V  +  +++ +      I +    +  T + +           + 
Sbjct: 403 LDALKPILESSNIIKVGQHIKYDKNVLANY-DITLNGIGF-DTMLESYVLNSTAQRHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 461 SLALAYLGHKTIHFEDIAGKGAKQL---------------TFNQIALEEAGPYAAEDADI 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   +                 E  L  +   +   G  ID   + +  + +A    
Sbjct: 506 TLRLHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLSQQSQDLAARIA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L++++ +       +   T  L+  LF    + +       +  T + +L    +    
Sbjct: 566 ELEKEVHEEAGEPF-NLGSTKQLQHILFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              I+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQA-ITATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   +   G K V AD + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA+G+DI+  T ++ F  P+D+V+ EQR   K +   L Y            
Sbjct: 720 GDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMS-----AFGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    ++   E    + + G    L        
Sbjct: 775 AKQLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                                       ++    V
Sbjct: 827 -PDIKASNGARRKGAERAAINAPMQGTAADII---------------------KMAMIKV 864

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISR-DILCEGMKNATKNGYDIVLTVHDEI 632
               S                           +  D+    M                E+
Sbjct: 865 DDWISKN-------------------------AADDVTM--MMQVHD-----------EL 886

Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E  +    S V T+ +LM    +    +PL  E    + +
Sbjct: 887 VFEIKEDKVDSYVKTINTLMESAAT--LNVPLVVEAGVGENW 926


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/728 (14%), Positives = 206/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L+P  D            E  L  +   
Sbjct: 514 -----TFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              E    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIDIDKA------------------IRGDDN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/695 (16%), Positives = 200/695 (28%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +       P  + N 
Sbjct: 389 AKLKPWLESAQQKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRDVEAT 170
               L       +   GK                +    +     +L    Y +   E T
Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIGFDEVALEKAAEYAAEDADITLRLHQTMYPQLAAEKT 506

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R     D E     + + +   G  ID + + +    IA    +L+    +L  G
Sbjct: 507 LENVYR-----DIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAYELAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           ++L     S 
Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620

Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+ S GR+        A  TGR +      QN+P              
Sbjct: 621 LKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA  G KLV AD + IE R++A I+G++  ++AF+ G
Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQG 715

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F+    +VS +QR + KV+                    G+     + N
Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLASN 761

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +                               +   A +L    + A++ GV +   +  
Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 792 LSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M    K       G  +++ VHDE++ E PD 
Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDE 876

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  LM      A  +PL AE      +
Sbjct: 877 ELPEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  D            E  L  +   
Sbjct: 514 -----TFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              E    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/716 (15%), Positives = 197/716 (27%), Gaps = 180/716 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51
              D ET S   +          QA I   ++A                           
Sbjct: 353 FSFDTETTSLDYM----------QARIVGLSFAVQSNVGSDEQPIIEAAYLPLAHDYIDA 402

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                       L   L  E    V  N  ++R +     GI++   ++  T + +    
Sbjct: 403 PKQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIELKGIKF-DTMLESYVLD 460

Query: 105 LP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L       +   GK                      +  +      
Sbjct: 461 STGRHDMDTLALKYLGHQCISFEEIAGKGKKQL---------------PFNQISIIEAAP 505

Query: 162 YCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           Y   D + T  L  +L               + E  L  +   I   G  ID DL+ K  
Sbjct: 506 YAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEIDSDLLTKQS 565

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILS 266
             I +   +L+    +       +      L+  L+    +         +  T + +L 
Sbjct: 566 AEIGKRLLELEALAYEEAGKPF-NLSSPKQLQTILYDELELPVLKKTPKGAPSTAEEVLQ 624

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVF 325
              +T     LI+     S       + L + V+   GRL  + Q    + TGR S    
Sbjct: 625 ELALTYPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLHTSYQQAV-TVTGRLSSTDP 683

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   IA  G K+V AD + IE
Sbjct: 684 NLQNIP------------------------IRSAEGRRIRQAFIAQPGYKIVAADYSQIE 719

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R++A ++ +   + AF+ G+DI+  T ++ F+ P+D+V+ EQR   K +          
Sbjct: 720 LRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINF-------- 771

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +     +L
Sbjct: 772 ------GLIYGMS------------------------------AFGLAKQLNIGRHEAQL 795

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               +  ++ GVL   +D              +                           
Sbjct: 796 YMDKYFNRYPGVLIYMEDTRSLANEKAYVETIL--------------------------G 829

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--- 622
           RRL   ++K     L        R            +Q  + DI+ + M +         
Sbjct: 830 RRLQLPNIKSRNGMLK---KAAERAAINAP------MQGTAADIIKKAMIDMADWIAQKS 880

Query: 623 ----DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +++ VHDE+V    +    S    + ++M K       +PL A+      +
Sbjct: 881 PGSVQMLMQVHDELVFSIKEELVESYTKEIQAIMAKAAD--LDVPLIADAGVGDNW 934


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D+ET S   +           A I   ++A +                        +
Sbjct: 322 FAFDLETTSLNYM----------DAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D     +  N  ++  +      I +   R+  T + +           + 
Sbjct: 372 LEQLRPLLEDPRRAKLGQNLKYDMSVLA-HYDIALRGVRF-DTMLESYILDSTATRHDMD 429

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                         A +   EY   D + 
Sbjct: 430 SLALKYLGHRTIKFEDVAGKGAKQL---------------TFDQVAIERATEYAAEDADI 474

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              L + L P               E  L  +   +   G  +  +L+      +AQ   
Sbjct: 475 ALRLHRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLA 534

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +++  + +       +      ++  L+   G+         +  T +S+L     T   
Sbjct: 535 EIEASVYRAAGCEF-NLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAESVLQELAATYPL 593

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   A +       + L   +    GR+  + +   A  TGR S      QN+P  
Sbjct: 594 PRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVA-ATGRLSSSDPNLQNIP-- 650

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +L+  D + +E R++A  +
Sbjct: 651 ----------------------VRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFS 688

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++   +AFA GEDI+  T A+ F T +++V+ EQR   K +                  
Sbjct: 689 GDERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAINF--------------GL 734

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +   A +   + +  +
Sbjct: 735 IYGMS------------------------------AYGLARQLGIERDAAQHYVERYFER 764

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV                                + R  +   ++     RRL   ++
Sbjct: 765 YPGVKAFM--------------------------ERIRREARERQYVETVFGRRLYLPEI 798

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627
               +    A     R            +Q  + DI+   M          +    +VL 
Sbjct: 799 NASNAQRRQAA---ERTAINAP------MQGSAADIIKRAMVRVDQWLQSEREDVFMVLQ 849

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P     +V   + + M         +PL  E      +
Sbjct: 850 VHDELVFEVPTPDVQAVAERIRAFMVGAAE--LSVPLTVEAGWGDNW 894


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 196/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLL 58
            L +D ET    P+           A +   +++  +         +       + ++  
Sbjct: 352 FLSLDTETTGTDPI----------SAKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFK 401

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               DE ++ +  N  ++ ++ +   GI +  +    T +        L   +       
Sbjct: 402 SVYEDERILKIGQNIKYDLMVLQNY-GITLKGE-IFDTMIAHYLLQPELRHGMDYLAEVY 459

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           LN+     +   G K                   +           EY   D + T +L 
Sbjct: 460 LNYQTIHIEELIGPKGKNQ---------------KNMADLPPSQVYEYACEDADITLKLK 504

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P            + E  L  +   +   G  ID + + +   L  +E   L+E+I
Sbjct: 505 NVFEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEI 564

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
             L      +      +   LF    I +    ++     T + +L          + IL
Sbjct: 565 HALAGEPF-NIASPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKIL 623

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 624 EHRGLKKLLGTYIDALPKLINPETGHIHTSFNQT-ITTTGRLSSSNPNLQNIP------- 675

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   I   G +   AD + IE R++A ++G+   
Sbjct: 676 -----------------VRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHM 718

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF  G DI+  T AK +  P+++V++E+R+  K                      G+ 
Sbjct: 719 IEAFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANF--------------GIIYGIT 764

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +   ++                                 +     + +   +   +  V 
Sbjct: 765 VFGLAER------------------------------MNVSRAEAKELIDGYFTTYPKVK 794

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +  +   E                                       R+    D+    +
Sbjct: 795 EYMQKSIETAREKGYTETIYH--------------------------RKCYLRDINSHNA 828

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +        R            +Q  + DI+   M    +          ++L VHDE+
Sbjct: 829 VVRGYA---ERNAINAP------IQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDEL 879

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M +   +   +PL+A+    K +
Sbjct: 880 NFSVYPEEKERVQQIVIEEMERA--YTMQVPLEADYGWGKNW 919


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/703 (15%), Positives = 202/703 (28%), Gaps = 151/703 (21%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
            L +D ET +            A +A +   + A           + +             
Sbjct: 438  LAVDTETNALD----------AHRADLVGVSLATAPGRAAYIPLSHRGSEDLFGEGLLPN 487

Query: 51   ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL- 105
                 A+ + L   L D  V+ V  N  ++ ++  +  GI++    +  T +++      
Sbjct: 488  QLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH-GIEVRP--YDDTMLISYVLDAG 544

Query: 106  --PSSLKNACLA-LNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRAN-HVQAWQLF 159
                 +       L           G     +         +  Y    A+  ++ W+L 
Sbjct: 545  KGSHGMDELARRHLGHQPITFADVTGTGRTKVTFDRVPLDKATAYAAEDADVTLRLWRLM 604

Query: 160  GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                  +  AT  +++ L      ER L  +   +   G R+D  ++ +L    +Q   +
Sbjct: 605  KPRLAAERRAT--VYETL------ERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLAR 656

Query: 220  LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLA 274
            L+ +I ++  G   S      +   LF   G+     +      T  ++L          
Sbjct: 657  LEAEIQEMA-GESFSVSSPKQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHAL 715

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               IL     S       +TL E    +     T     A+ TGR S      QN+P   
Sbjct: 716  PKKILEWRQLSKLKSTYTDTLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQNIP--- 772

Query: 335  RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                         +R   +A  G KL+ AD + IE R+LA IA 
Sbjct: 773  ---------------------IRTEEGRRIRQAFVADEGHKLISADYSQIELRLLAHIAD 811

Query: 395  EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
                 +AFA G DI+  T +  F  P+D+++ + R   K +   + Y             
Sbjct: 812  IPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINFGIIYG-----ISAFGLA 866

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
              L + Q          FE +    ++   ++    +      L G  C          +
Sbjct: 867  DRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRVCH---------Y 917

Query: 515  QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
              +                      +                          R     ++
Sbjct: 918  PQIRSNNPQERASVERQAINAPIQGSAADII---------------------RRAMVRME 956

Query: 575  GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
            G  +     T                             M           L VHDE+V 
Sbjct: 957  GALAAAGLTTR----------------------------ML----------LQVHDELVF 978

Query: 635  ETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRYR 674
            E PD     ++  +  +M + P  A    +PL  E   A  ++
Sbjct: 979  EAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQ 1021


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 197/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             + Q     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLVQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/709 (15%), Positives = 211/709 (29%), Gaps = 166/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
           + +D ET     +             +   +   +         T               
Sbjct: 352 VAVDTETTGFDEMV----------VDLVGISLCVEPGSACYIPLTHKSGSSDDLFGSDDL 401

Query: 50  -QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               MP       L   L D +++ +  N  ++  +F +  GID+       T +++   
Sbjct: 402 ADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAP--IDDTMLMSYAM 458

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       LN +    K  +  GK+ I        D+  Y    A+  ++ W
Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     +    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
              L+ +I +L  G   +      L   LF   G++     +     T   IL       
Sbjct: 571 MAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDLATEH 629

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L+    S       + L + ++   GR+  +    GA+ TGR +      QN+P
Sbjct: 630 ALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNIP 688

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +   G  L+  D + IE R+LA 
Sbjct: 689 ------------------------IRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAH 724

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG D   +AFA G+DI+  T ++ FN P+++++ + R   K +                
Sbjct: 725 VAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------------F 770

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 771 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 800

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +   +                                   H+     R++   
Sbjct: 801 ERFPGIRRYMDETVAFAKEHG--------------------------HVQTLFGRKIHTP 834

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + S          R            +Q  + D++   M             ++L 
Sbjct: 835 ----EISAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLPARMLLQ 884

Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
           VHDE++ E P+     ++ T   +M      A    + L  +    + +
Sbjct: 885 VHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKLVVDAGRGQNW 933


>gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/690 (16%), Positives = 205/690 (29%), Gaps = 143/690 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           +  D ET    PL           A +   A++W+              E  A+  +L  
Sbjct: 379 VCFDTETTGLDPLV----------AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRP 428

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +  +  +  +  N  ++  +  K   + +  K    T +           ++       L
Sbjct: 429 FFENTAIEKIGQNLKYDIKVLAKY-NVKVKGK-LFDTMLAHYLINPDMRHNMDVLAETYL 486

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++        GK    +  K   D    D T      A          + E      ++
Sbjct: 487 NYTPVSITELIGKK--GKNQKSMRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRK 544

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    D E  L  +   +   G  +D+  +  L   +  + ++L  +I         +  
Sbjct: 545 LFD--DIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEAGEEF-NIG 601

Query: 237 QTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L   LF    + D    ++     T + +LS+          +L+    S      
Sbjct: 602 SPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSKLKSTY 661

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L E V+ DGR+        A  TGR S      QN+P                    
Sbjct: 662 VDALPEQVAQDGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------------- 700

Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       VR   +       L+ AD + IE R++A ++ E+  I+AF +GEDI+ 
Sbjct: 701 ----IRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDGEDIHA 756

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           +T AK FN P+++V++EQR+  K +   + Y                D            
Sbjct: 757 STAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD------------ 799

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                      L     + +   +   +  +     +L E    
Sbjct: 800 ---------------------------LSRGEAKELIDNYYKSYPKLRNYMSELVEFARE 832

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                  +                           RR   + +      +  A  +    
Sbjct: 833 NGYVKTVLD--------------------------RRRYLNGINSSNGVVRGAAERN--- 863

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+   M N  +          ++L VHDE+V + P+    ++
Sbjct: 864 ------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAI 917

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             L    M      A  +PL  E    + +
Sbjct: 918 KELIKTEMESAFKMA--VPLDVEVGLGQNW 945


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/702 (14%), Positives = 182/702 (25%), Gaps = 161/702 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   L           A I   +++ +                        + 
Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +L D     +  +  ++R +F    GI +       T + +    +  P  L + 
Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLASL 456

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                  +    +   GK                                Y   D + T 
Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVDKAAAYSCEDSDQTL 501

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++ + L P            + E         I   G  ID   +      + Q   +L+
Sbjct: 502 DVHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLE 561

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           ++   +      +      L    F   G+ +V  +      T + +L            
Sbjct: 562 QEAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 620

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   +         + LS       GR+        A  TGR S      QN+P     
Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP----- 674

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +  AD + IE R++A I+G++
Sbjct: 675 -------------------IRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF  G D++  T A+ F   +D+VS EQR   KV+   L Y        +      
Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKN 770

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L ++  +        F+ +   + +    + +       + + G    L           
Sbjct: 771 LGIETKAAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYL---------PE 821

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +                                                           
Sbjct: 822 INSPNGPRRGAAERAAINAPMQGT------------------------------------ 845

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                              K     VQ                   +++  + VHDE+V 
Sbjct: 846 --------------AADLIKKAMVAVQG-----------ELDARKPEVLMIMQVHDELVF 880

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P+     +   +  LM      A  +PL AE      + K
Sbjct: 881 ELPEGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 108 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 157

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 158 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 214

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 215 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 259

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 260 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 319

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 320 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 378

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 379 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 438

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 439 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 474

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 475 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 526

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 527 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 550

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 551 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 584

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 585 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 635

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 636 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 692


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 209/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 378

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA   +
Sbjct: 482 TLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLE 541

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 542 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSVEIEQRLSELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMELYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              +    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 182/705 (25%), Gaps = 169/705 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPS 55
           ID ET S   +           A I   +++ +                        + +
Sbjct: 368 IDTETTSLDEMV----------ARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLA 417

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC 113
            L  +L +     +  +  ++R +F    GI++       T + +       P  L +  
Sbjct: 418 RLKPWLENPAKKKLGQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEAHRPHGLASLA 475

Query: 114 LA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L  S    +   GK                               EY   D + T +
Sbjct: 476 ERHLGRSGISYEDLCGKGAHQ---------------IPFSQVDIAKAAEYSCEDSDQTLD 520

Query: 173 LFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           +   L P  +           E D       +   G  ID   +      +      L++
Sbjct: 521 VHLALWPQIERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQ 580

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLI 278
           +  ++      +      +    F   G+         +  T + +L            I
Sbjct: 581 EAYEIAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKI 639

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     S       + L +  +   GR+        A  TGR S      QN+P      
Sbjct: 640 LEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP------ 692

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR   IA  G  +  AD + IE R++A I+G++ 
Sbjct: 693 ------------------IRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDES 734

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++AF  G D++  T A+ F    D+VS EQ                             
Sbjct: 735 LLRAFREGIDVHRATAAEVFGATPDQVSSEQ----------------------------- 765

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                            + +  +  L         A    +   A       + A++ GV
Sbjct: 766 ---------------RRYAKVINFGLIYGMSSFGLARNLGIETKAAASYIDRYFARYPGV 810

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                +                                          RRL   ++    
Sbjct: 811 KAYMDETKALAKEKGYVETVF--------------------------GRRLYLPEINSPN 844

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
                      R            +Q  + D++   M          K    +++ VHDE
Sbjct: 845 GPRRGGA---ERAAINAP------MQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDE 895

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V E P+     V   +  LM         +PL AE      + K
Sbjct: 896 LVFEVPEAEIEWVRTEIPRLMAGVAE--LKVPLLAEIGIGPNWDK 938


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 182/702 (25%), Gaps = 161/702 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S   L           A I   +++ +                        + 
Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +L D     +  +  ++R +F    GI +       T + +    +  P  L + 
Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLTSL 456

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                  +    +   GK                                Y   D + T 
Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVDKAAAYSCEDSDQTL 501

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++ + L P            + E         I   G  ID   +      + Q   +L+
Sbjct: 502 DVHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLE 561

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           ++   +      +      L    F   G+ +V  +      T + +L            
Sbjct: 562 QEAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 620

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   +         + LS       GR+        A  TGR S      QN+P     
Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP----- 674

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +  AD + IE R++A I+G++
Sbjct: 675 -------------------IRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF  G D++  T A+ F   +D+VS EQR   KV+   L Y        +      
Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKN 770

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L ++  +        F+ +   + +    + Q       + + G    L           
Sbjct: 771 LGIETKAAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYL---------PE 821

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +                                                           
Sbjct: 822 INSPNGPRRGAAERAAINAPMQGT------------------------------------ 845

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                              K     VQ                   +++  + VHDE+V 
Sbjct: 846 --------------AADLIKKAMVAVQG-----------ELDARKPEVLMIMQVHDELVF 880

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E P+     +   +  LM      A  +PL AE      + K
Sbjct: 881 ELPEGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +           A +   ++A ++                       +
Sbjct: 355 IAFDTETDSLDYMV----------ANLVGLSFAIEEGVAAYVPVAHDYIGAPEQLDRQWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+ +  V  N  ++  +  +   I++   ++  T + +           + 
Sbjct: 405 LEQLKPLLEDDAIAKVGQNLKYDASVLARY-DIELKGIKF-DTMLASYVYNSVGGKHDMD 462

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 463 SLALRFLQHSCISFEQIAGKGKAQL---------------TFNQIDLEQASPYAAEDADV 507

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +RL    +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 508 TFRLHQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++      +      L+   F   G+         +  T + +L    +    
Sbjct: 568 ELEQKAFEIAGQEF-NLSSPKQLQTIFFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA +G K++  D + IE R++A ++
Sbjct: 684 ----------------------IRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF NG+DI+  T A+     ID+V+ EQR   K +                  
Sbjct: 722 GDKALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINF--------------GL 767

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   + +  +     +     +  +
Sbjct: 768 IYGMS------------------------------AFGLSKQLGIPRGEAQQYMDTYFER 797

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 798 YPGVMQYMEDTRSLAAEKGYVETIF--------------------------GRRLHLPEI 831

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M           +    +++
Sbjct: 832 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWVQAEGEGKVKLLM 882

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 883 QVHDELVFEVESSSLSEIESKIQKLMESAAE--LDVPLVAEAGHGDNW 928


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 196/716 (27%), Gaps = 178/716 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L  D ET S  P+          QA +   + A             +             
Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                 A  + L   L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 457 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                        +        
Sbjct: 514 GTGSHGMNPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 558

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +AQ     +++I  L             L   LF   G+     ++     T   +L  
Sbjct: 619 DLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 677

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      I++    +       + L   ++   +   T     ++ TGR S     
Sbjct: 678 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 737

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G KL+ AD + IE 
Sbjct: 738 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 773

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +           
Sbjct: 774 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 824

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 825 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 849

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +  +  G+    +                                           R
Sbjct: 850 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 883

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R  Y D++          +   R            +Q  + DI+   M            
Sbjct: 884 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 934

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E P+        +   +M     P+ +  +PL+ +   A  +
Sbjct: 935 AARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 274 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 323

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 324 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 381

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 382 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 426

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 427 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 486

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 487 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 545

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 546 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 602

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 603 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 640

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 641 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 686

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 687 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 716

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 717 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 748

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 749 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 800

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 801 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 847


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D +   +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLDKASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA    +L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVEL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYVLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ + GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                        VHDE+V E
Sbjct: 854 ---SMIAVDDWLER----GGFAARMIMQ------------------------VHDELVLE 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/692 (16%), Positives = 201/692 (29%), Gaps = 132/692 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQS-------AMPSDL 57
           D ET   +P            A +      W  E                     +   L
Sbjct: 398 DTETSDLKP----------RNAELVGIGCCWGLEATDTAYIPIAHNQGQNLDQQTVLEAL 447

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L  +    V  N  F+R++  +T GI +     + T + +         +L +    
Sbjct: 448 RPILERDRYPKVLQNVKFDRLVL-RTQGIKLAGV-VMDTMLASYVLNPDNSHNLNSLTER 505

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--EL 173
             F +   K    K L     K   +           +Q +  F    K   +      +
Sbjct: 506 Y-FPQIQLKSY--KDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREKLEAIPAI 562

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            K L    + E+ L  +   +  +G RID   + +L E + ++   ++++  K       
Sbjct: 563 EKLL---LEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYKQAGEEF- 618

Query: 234 SSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      L   LF    +D            T  + L          D IL     S   
Sbjct: 619 NLGSPKQLSELLFEKLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEHRTLSKLK 678

Query: 289 ILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L + V  D  R+         + TGR S      QN+P                
Sbjct: 679 STYVDALPKLVHKDTQRIHTDFNQT-ITSTGRLSSSNPNLQNIP---------------- 721

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +  +G  LV AD + IE R+LA ++ E   ++ + N +D
Sbjct: 722 --------IRTAFSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLVETYRNNQD 773

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T    F    + V+ E+R +GK +   + Y  G + F   A      +        
Sbjct: 774 IHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGPQRFAREA-----GVSAAEGKEF 826

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                + + +   +   M+         + ++G        + R                
Sbjct: 827 IDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGRRRYFEFNSNR---------------- 870

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                L   + K    I L             +   +    S L
Sbjct: 871 ---------------------LRDAKGKNPQEIDL------------DEFKGIGQYDSGL 897

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643
           +R            +Q  S DI+   M    +        ++L VHDE+V E P   +  
Sbjct: 898 LRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQVHDELVFEVPPDEWEE 951

Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +   +   M         +PL  +  E + + 
Sbjct: 952 LQPKIRETMESAVE--LTVPLVVDVSEGENWM 981


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D +   +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLDKASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA    +L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVEL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYVLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ + GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                        VHDE+V E
Sbjct: 854 ---SMIAVDDWLER----GGFAARMIMQ------------------------VHDELVLE 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/728 (14%), Positives = 203/728 (27%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                       +L   L    V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDIASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              +    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 199/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            +  D ET S   +          QA +   + A             +            
Sbjct: 21  YVAFDTETTSLDEM----------QAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNR 70

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                     + + L   L D  V+ +  N  ++  +  +     +       T +L+  
Sbjct: 71  LTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARY---GVHLAPVDDTMLLSYA 127

Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       LN      K   G  K+ +         +  Y    A+  ++ 
Sbjct: 128 LHAGLHNHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAYAAEDADITLRL 187

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ F     +    T  +++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 188 WQHFKPQLPQSRVTT--VYETL------ERPLIPVLTRMEMAGVQVDRDTLSRMSNAFAQ 239

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNIT 271
           +  +L+E+I     G   +      L   LF   G    +   + + GT   +L      
Sbjct: 240 KMVQLEEEIHAAA-GRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDLATE 298

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                LIL+    +       + L + ++ D GR+  +    GA+ TGR +      QN+
Sbjct: 299 HALPGLILDWRQVAKLKSTYTDALQDHINPDSGRVHTSYSIAGAN-TGRLASTDPNLQNI 357

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 358 P------------------------VRTEEGRRIRGAFVAPAGKVLVSLDYSQIELRILA 393

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA  D   +AF  G DI+  T ++ FN P+D+++ E R   K +               
Sbjct: 394 QIAQIDALKEAFQQGLDIHAATASEMFNVPLDQMTPEIRRQAKAIN-------------- 439

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 440 FGVIYGIS------------------------------AFGLARNLRIPRDRAQGFIDRY 469

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+                                                RR+  
Sbjct: 470 FERFPGIRAYMDQTIAFAKENGHVRTLF--------------------------GRRINT 503

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
                + +          R            +Q  + DI+   M             ++L
Sbjct: 504 P----EINAKGPHAGFARRAAINAP------IQGTAADIIRRAMIQMDPAIAHLPARMLL 553

Query: 627 TVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWA--KGLPLKAEGYEAKRY 673
            VHDE++ E  +     +  +   +M      A    + L  +    + +
Sbjct: 554 QVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDAGRGQNW 603


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 207/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 378

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 482 TLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 542 QLEQKAYELAGKPF-NVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 353 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 403 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 461 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 506 TLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 566 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 625 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 682 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 796 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 827

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 828 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 879

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 880 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 926


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAQDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L+     +L P  + E         +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++ D    +      +   LF   GI     +      T +S+L        
Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKIAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGKNW 919


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 191/706 (27%), Gaps = 169/706 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            ID ET S   L           A I   +++ +                        + 
Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L D     +  +  ++R +F    GI++       T + +    +  P  L + 
Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                  +    +   GK                                Y   D + T 
Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ---------------IPFSQVPVDKAAAYSCEDSDQTL 500

Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++ + L P  +           E         I   G  ID D +      + Q   +L+
Sbjct: 501 DVHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLE 560

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           ++   +      +      L    F   G+ +V  +      T + +L            
Sbjct: 561 QEAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 619

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   + S       + L++      GR+        A  TGR S      QN+P     
Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 673

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +   D + IE R++A I+G++
Sbjct: 674 -------------------IRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AF  G D++  T A+ F   + +V+ EQ                            
Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQ---------------------------- 746

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +  L         A    +  TA +     +  ++ G
Sbjct: 747 ----------------RRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQRYPG 790

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V Q  +D                                          RRL   ++   
Sbjct: 791 VWQYMQDTKAQAKARGYVETVF--------------------------GRRLYLPEINSP 824

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                +A     R            +Q  + D++ + M               +++ VHD
Sbjct: 825 NGPRRSAA---ERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHD 875

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V E P+     +   +  +M         +PL AE      + K
Sbjct: 876 ELVFELPEGDVDWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/707 (14%), Positives = 191/707 (27%), Gaps = 169/707 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S   +           A I   +++                          +
Sbjct: 383 VALDTETTSLDEMR----------AQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLADV 432

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L+D +   +  +  ++R +F    GI++       T + +    +  P  L +
Sbjct: 433 LAKLKPWLQDASHKKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLAS 490

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                               +Y   D + T
Sbjct: 491 LAERHLGRSGISFEDLCGKGANQ---------------ICFDQVDIAQAAQYSCEDSDMT 535

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            ++ + L PL           + E         I   G  ID   +      + Q   +L
Sbjct: 536 LDVHRALWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQL 595

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276
           +++  +L      +      +    F   G+ +V  +      T   +L           
Sbjct: 596 EKEAHELAGQPF-NLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPA 654

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL     +       + L++      GR+        A  TGR S      QN+P    
Sbjct: 655 KILEHRGLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA-VTGRLSSLEPNLQNIP---- 709

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G  +  AD + IE R++A I+G+
Sbjct: 710 --------------------VRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGD 749

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AF +G D++  T ++ F     +V+ EQ                           
Sbjct: 750 AALLLAFHDGIDVHRATASEIFGVDRAQVTSEQ--------------------------- 782

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +  TA +   + +  ++ 
Sbjct: 783 -----------------RRYAKVINFGLIYGMSAYGLAKALSIDNTAAKNYIERYFDRYP 825

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    +                                           RRL   ++  
Sbjct: 826 GVKNYMEHTRALAKRQGYVETVF--------------------------GRRLYLPEINS 859

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                 +      R            +Q  + D++   M          K    +++ VH
Sbjct: 860 PNGPRRSGA---ERAAINAP------MQGTAADLIKLSMVKVQQVIDEEKRATKMIMQVH 910

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V E P++    V   +  LM         +PL AE      + K
Sbjct: 911 DELVFEVPESEIDWVRHEVPRLMAGVAH--LKVPLLAEVGVGANWDK 955


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/718 (14%), Positives = 198/718 (27%), Gaps = 184/718 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET     +             +   +   +           +             
Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCTEPGEACYIPLAHRADSDGGLFGDGDL 399

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                   A    L   L D  VM +  N  ++  +F +     +       T +++   
Sbjct: 400 AEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY---GVRIAPIDDTMLMSYAM 456

Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                   +       L+ +    K   G  K +         D+               
Sbjct: 457 NAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQVPIEDAV-------------- 502

Query: 158 LFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVL 207
              +Y   D + T  L+  L P              ER L  +   +   G ++D D + 
Sbjct: 503 ---KYAAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLS 559

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263
           ++    +Q+   L+ +I +L  G   +      L   LF   G++     +     T   
Sbjct: 560 RMSNAFSQKMAALEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGAD 618

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSG 322
           +L            +L+    S       + L E ++ D GR+  +    GA+ TGR S 
Sbjct: 619 VLEDLATEHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGAN-TGRLSS 677

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   +A  GK +V  D +
Sbjct: 678 TDPNLQNIP------------------------VRSEEGRRIREAFVAPEGKTIVALDYS 713

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A  D   +AF +G+DI+  T ++ FN P+D+++ E R   K +       
Sbjct: 714 QIELRILAHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINF----- 768

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+                                   A   ++  + 
Sbjct: 769 ---------GVIYGISGF------------------------------GLARNLRIPRSE 789

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  +  G+     D                                    +  
Sbjct: 790 AQGFIDRYFERFPGIRTYMDDTVAFAKE--------------------------HKRVET 823

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----AT 618
              R +       + +          R            +Q  + DI+   M        
Sbjct: 824 LFGRVIHTP----EIAAKGPRAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAIE 873

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           K    ++L VHDE++ E       ++     ++M     P     +PL  +  + K +
Sbjct: 874 KLPATMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLDVPLVVDAGQGKSW 931


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/722 (14%), Positives = 203/722 (28%), Gaps = 182/722 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET +  P+           A +   ++A  +          +             
Sbjct: 356 IAVDTETDALDPMR----------ANLVGISFALTNSEACYIPLAHKQAVKEMTQTDLFT 405

Query: 51  ------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
                                 + L   L + ++  V  N  ++  +F     I +    
Sbjct: 406 ESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHH-IQLNGVC 464

Query: 93  WICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           +  T + +         ++       L       +   GK                    
Sbjct: 465 F-DTMLQSYVLDSTGRHNMGALSERYLGHQVIEFESIAGKGKKQ---------------V 508

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRG 198
                A     EY   D + T +L + L               D E  L  +   +   G
Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSKMERNG 568

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----V 254
             ID   +LK  E IA+    L++ + +       +   T  L+  LF    + +     
Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAGAEF-NLASTKQLQEILFTKLALPIIAKTP 627

Query: 255 DMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
             +  T + +L        +   L++     +       + L   V+   GR+  +    
Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                               C+R   IA  
Sbjct: 688 V-TATGRLSSSDPNLQNIP------------------------IKNEEGHCIRQAFIARK 722

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G K++ AD + IE R++A ++ ++  I AF  G+DI+ +T A+ F  P+++V+ EQR   
Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   L Y        +      L + + +        F+ +   ++  + ++++  E 
Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
              + L G    L           +        +G   V                     
Sbjct: 838 GYVETLFGRRLYL---------PEINSSNAIRRKGAERVAINAPMQGTAADII------- 881

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                         +L    +  +                       N +Q         
Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAK 671
                      +++ VHDE+V E  +         + SLM         +PL  +     
Sbjct: 899 -----------MIMQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945

Query: 672 RY 673
            +
Sbjct: 946 NW 947


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 96/725 (13%), Positives = 185/725 (25%), Gaps = 184/725 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
           + +D ET S   +           A +   ++  ++                        
Sbjct: 357 IAVDTETDSLDAMT----------AELVGISFGLENGEACYIPLAHVHEVAEAEEQAQAD 406

Query: 50  ---------------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
                                +    + L   L +  +  +  N  ++  +F    GI +
Sbjct: 407 LFAEPKATGKTSWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQV 465

Query: 89  PSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
               +  T + +         ++ +     L       +   GK                
Sbjct: 466 QGVAF-DTMLESYVLNSTGRHNMDDLAERYLGHQTISFETLAGKGKNQL----------- 513

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTI 194
                          EY   D + T +L + L    +            E  L  +   I
Sbjct: 514 ----TFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTLTTLFKDIELPLVSVLSRI 569

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G  ID   + K  +   +    L+    ++  G   +      L+  LF    +   
Sbjct: 570 ERNGVLIDAQALRKQSQEFGERLTALEAKAHEIA-GEAFNLASPKQLQEILFNKLHLPVL 628

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                    T + +L           L++     +       + L + ++   GR+  + 
Sbjct: 629 QKTPKGDPSTKEEVLEELAFDHELPKLLVEHRGLAKLKSTYTDKLPQMINPHTGRVHTSY 688

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 689 HQAV-TATGRLSSTDPNLQNIP------------------------IRNEEGRRIRQAFV 723

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A +G +++ AD + IE R++A ++G+     AF  G DI+ +T ++ F  P++ VS EQR
Sbjct: 724 ARDGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQR 783

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   L Y               L + +          F+ +   ++    +Q++ 
Sbjct: 784 RSAKAINFGLIYGMS-----AFGLSRQLAISRMEAKKYMDLYFQRYPNVQTFMHDIQEKA 838

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                 + L G    L           +        +G   V                  
Sbjct: 839 KAQGFVETLFGRRLYL---------PDIKSGNASRRKGAERVAINAPMQGTAADII---- 885

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            +    D+    +                             DI
Sbjct: 886 -----------------KRAMIDIDHVIAGDE--------------------------DI 902

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
           L   M           + VHDE+V E           L    M         +PL  E  
Sbjct: 903 L---MI----------MQVHDELVFEVRSEKVEFYSELIKQKMETAAQ--LDVPLIVEAG 947

Query: 669 EAKRY 673
               +
Sbjct: 948 VGANW 952


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 570 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/710 (15%), Positives = 204/710 (28%), Gaps = 165/710 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           +  D ET S            A QA +   + A                           
Sbjct: 406 VAFDTETTSLD----------AMQAELVGVSLATAPGKACYVPLAHVDGEGDLLGGGGLV 455

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                       L   L D  V+ +A N  ++ ++  +  G++I    +  T +L+    
Sbjct: 456 EGQIPLAEALDVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAP--YDDTMLLSYVLD 512

Query: 105 LPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157
                  +       L+ +    K   G  KA++         +  Y    A+  ++ W+
Sbjct: 513 AGKGGNGMDELAERWLDHTPIPFKEVAGSGKAMVTFDKVPIDKATAYAAEDADVTLRLWR 572

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +       +  AT  +++ L      ER +  +   +  RG  +D  ++ +L    AQ  
Sbjct: 573 VLKPRLVAERMAT--VYETL------ERPMVPVLARMERRGISVDRQMLSRLSGDFAQGM 624

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-Q 272
             L+ +I  L  G   +      L   LF   G+     ++     T  S+L        
Sbjct: 625 AALEAEIHALA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSVSVLDDLAAEGH 683

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
                I+     S       + L   +  + +   T     ++ TGR S      QN+P 
Sbjct: 684 ELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRLSSSEPNLQNIP- 742

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+ AD + IE RVLA +
Sbjct: 743 -----------------------VRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHM 779

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A      +AFA+G DI+  T ++ F  PI+ +    R   K +                 
Sbjct: 780 ADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINF--------------G 825

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+     +  +                               L         K +  
Sbjct: 826 IIYGISAFGLAAQL------------------------------GLSRGEAGDYIKTYFE 855

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  G+    + + +                                       R+  Y D
Sbjct: 856 RFPGIRDYMEAIKKEVHTKGYVTTVF--------------------------GRKAHYPD 889

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVL 626
           V      L            Y        +Q  + DI+   M              +++L
Sbjct: 890 VNTSNPSLR---------AFYERAAINAPIQGSAADIIRRAMVRMDAALAAAKLDAEMLL 940

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P+    +   +   +M     P+    +PL+ +   A  +
Sbjct: 941 QVHDELIFEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDARAADNW 990


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 196/716 (27%), Gaps = 178/716 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L  D ET S  P+          QA +   + A             +             
Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                 A  + L   L D +++ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 441 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                        +        
Sbjct: 498 GTGSHGMNPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 542

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +AQ     +++I  L             L   LF   G+     ++     T   +L  
Sbjct: 603 DLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 661

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      I++    +       + L   ++   +   T     ++ TGR S     
Sbjct: 662 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 721

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G KL+ AD + IE 
Sbjct: 722 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 757

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +           
Sbjct: 758 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 808

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 809 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 833

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +  +  G+    +                                           R
Sbjct: 834 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 867

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R  Y D++          +   R            +Q  + DI+   M            
Sbjct: 868 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 918

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E P+        +   +M     P+ +  +PL+ +   A  +
Sbjct: 919 AARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/710 (14%), Positives = 201/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
            + +D ET S   +          QA +   + A           T +            
Sbjct: 350 YVAVDTETTSLNEM----------QADLVGISLAIAPGRACYIPLTHKDGAADDLFGSDK 399

Query: 52  ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                       + L   L D  ++ +  N  ++  +F    GI +       T +++  
Sbjct: 400 MAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFA-ARGITVEP--IDDTMLMSYA 456

Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K   G  K  +        ++  Y    A+  ++ 
Sbjct: 457 LHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPVDEAVKYAAEDADITLRL 516

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W  F     R    T  +++ L      ER L  +   +   G ++D   +  +    AQ
Sbjct: 517 WLTFKPQLHRARVTT--VYETL------ERPLVPVLAQMERYGVKVDRATLRAMSGKFAQ 568

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF   G+         +  T   +L      
Sbjct: 569 KMAALESEIHELA-GRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGADVLEDLATE 627

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L + +  D GR+  +    GA+ TGR +      QN+
Sbjct: 628 HELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGAN-TGRLASTDPNLQNI 686

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A++G +LV  D + IE R+LA
Sbjct: 687 P------------------------VRSEEGRRIREAFVAASGHRLVSLDYSQIELRILA 722

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +A  +   +AF  G DI+  T ++ FN P+D+++ E R   K +               
Sbjct: 723 HVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINF------------- 769

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++  +  +     +
Sbjct: 770 -GVIYGISGF------------------------------GLARNLRIPRSEAQGFIDRY 798

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+                                          +     R++  
Sbjct: 799 FERFPGIKDYMDATVAFAKEHGY--------------------------VQTLFGRKIHT 832

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + S          R            +Q  + DI+   M             ++L
Sbjct: 833 P----EISAKGPRAGFARRAAINAP------IQGSAADIIRRAMIRMPDAIEGLPCKMLL 882

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +     +  +   +M     P+    +PL  +  +   +
Sbjct: 883 QVHDELIFEVAEEATDRLIEIARDVMQGAASPAVHLDVPLVVDAGQGVNW 932


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/704 (15%), Positives = 190/704 (26%), Gaps = 170/704 (24%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPS 55
            D ET S  P+          QA I   ++A                       +  + +
Sbjct: 359 FDTETDSLDPM----------QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLA 408

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113
            L  +L +     V  N+ ++R +     GI +       T ++          ++    
Sbjct: 409 QLKPWLENPAAAKVLQNANYDRHVLANH-GIRLAGVA-DDTMLMDYVLASHERHNMDAMA 466

Query: 114 LA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L  +    +   GK                                Y   D + T  
Sbjct: 467 ERELGLATIKYEDICGKG---------------ARQIGFAEVDLDTATRYAAEDADVTLR 511

Query: 173 LFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L   L    DG         E     +   +   G  ID   + +  +++ +E   ++ +
Sbjct: 512 LRDVLAGKLDGARDTLYSSIELPTAAVLFAMERTGVLIDRAELARQSQVLGEEMLAIETE 571

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDL 277
           + +L      +      L   LF    ID             T +S+L            
Sbjct: 572 VYELAGQPF-NLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKA 630

Query: 278 ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L     +       + L   ++ D GR+           TGR +      QN+P     
Sbjct: 631 LLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASV-VTGRLASSDPNLQNIP----- 684

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G  +V AD + IE R++A ++G+ 
Sbjct: 685 -------------------IRTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDA 725

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I AF  G DI+  T ++ F  P++ VS EQR                          G
Sbjct: 726 GLIAAFREGRDIHRATASEVFGVPLEAVSAEQRRYA--------------KTINFGLIYG 771

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A   ++   A +   + + A++ G
Sbjct: 772 MS------------------------------AFGLAKSLEIDNKAAQTFIERYFARYPG 801

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V    +   E                                 +     RRL   +++  
Sbjct: 802 VQDYMQRTREAAREQG--------------------------WVETVFGRRLYLPEIRSS 835

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHD 630
            +       +               +Q  + D++   M          +    +++ VHD
Sbjct: 836 NAARRAGAERA---------AINAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHD 886

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E P+     V   L   M      A  +PL AE      +
Sbjct: 887 ELVLEVPEAERERVCAALPQEMAAVAGLA--VPLVAEVGSGANW 928


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/700 (16%), Positives = 205/700 (29%), Gaps = 154/700 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 380 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 429

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 430 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 487

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +      + D 
Sbjct: 488 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 546

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +   E+++++      E  +  +   +   G +ID   + +    +  E  KL++     
Sbjct: 547 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAA 599

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 600 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 658

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 659 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 708

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 709 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 753

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +                    G+   
Sbjct: 754 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLIYGMGQY 799

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    +   + +     + A++ GV + 
Sbjct: 800 ------------------------------GLAKSLGIDNLSAKTFIDRYFARYPGVAEY 829

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E  A                              +     RRL   D++   +  
Sbjct: 830 MQRTKEQAAAQGY--------------------------VETLFGRRLYLPDIRNKNA-- 861

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVS 634
             A +   R            +Q  + D++   M + ++          +++ VHDE+V 
Sbjct: 862 -NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVL 914

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+     V   L  +M K       +PL AE      +
Sbjct: 915 EVPEAELDLVKEKLPQIMEKVDEGMLNVPLVAEVGVGMNW 954


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 100 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 149

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 150 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 206

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 207 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 251

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 252 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 311

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 312 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 370

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I++    +       + L   ++   +   T     ++ TGR S    
Sbjct: 371 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 430

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R+  IA  G KL+ AD + IE
Sbjct: 431 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 466

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 467 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 518

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A +  +       
Sbjct: 519 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 542

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +  +  G+    +                                           
Sbjct: 543 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 576

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR  Y D++          +   R            +Q  + DI+   M           
Sbjct: 577 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 627

Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 628 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 684


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/728 (14%), Positives = 204/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +          +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLMHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA+ G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              +    + L G    L           +        +      +      +A  +  V
Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 946 EVGVGDNW 953


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 197/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             +D+ET S  PL          +A I   ++++ +          +            +
Sbjct: 316 FAVDLETTSLNPL----------EAEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRDDV 365

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLK 110
              L   L D     +  N  ++  + ++  GID+    W  T + +           L 
Sbjct: 366 LGALKPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGI-WCDTMLASYLLNPTRTSQGLD 423

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+          GK                   +       +    Y   D +A
Sbjct: 424 SLAVEFLDHRMISYAEVAGKGKEQ---------------KNFAQVEVEKASVYSCEDADA 468

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L K  +P            + E  L  +   +   G ++DL L+ +L +    +   
Sbjct: 469 TYLLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLAD 528

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274
           L+ +I  L  G   +      L   LF    + +   ++      T    L         
Sbjct: 529 LEREIFALAGGEF-NVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEI 587

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL   + S       + L + V +  GR+  +      + TGR S      QN+P  
Sbjct: 588 ARLILQYRSLSKLKSTYTDALPKLVDAASGRVHTSYNQAV-TNTGRLSSSEPNLQNIP-- 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA+ G  L+ AD + IE RVLA ++
Sbjct: 645 ----------------------IRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +     AFA  EDI+  T A+ F      V++E R   K +                  
Sbjct: 683 ADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTIN----------------- 725

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                        +         A +  +     +     + A+
Sbjct: 726 ---------------------------FGVIYGQGAFSLARELGVSTKVAKEFIDNYFAR 758

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H G                     +                           RRL   D+
Sbjct: 759 HAGARTFLDGCVREAEDNGYVTTIL--------------------------GRRLPIPDI 792

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
           K     +     +               +Q  + DI+ + M               +++ 
Sbjct: 793 KSSNGNIRAFAQRN---------AVNYPIQGSAADIIKQAMVRVVDRMEREGMKSRLIMQ 843

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+    ++  L    M    +    +PL+ +    + +
Sbjct: 844 VHDELVFEVPEEEKLAMEMLVKHEMEHAVT--LRVPLRVDMNFGRNW 888


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 378

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 482 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 542 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/728 (15%), Positives = 209/728 (28%), Gaps = 185/728 (25%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS---- 55
           M++L  +D ET +            A QA +   ++  ++          +  +      
Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKITQPTQV 402

Query: 56  ----------------------------DLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                        L   L +  +  +  N  ++  +F +  GI+
Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLVQLKPILENPNIRKIGQNIKYDLTIFARN-GIE 461

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++ N     L       +   GK               
Sbjct: 462 LQGVAF-DTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEELAGKGKHQL---------- 510

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                           EY   D E T +L + L                 E  L  +   
Sbjct: 511 -----TFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSR 565

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  ID   +L     I Q  K+L+  + +   G + +   T  L+  LF   G+ +
Sbjct: 566 VERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEA-GEVFNLASTKQLQEILFNKLGLPI 624

Query: 254 ----VDMSEGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L     +      L++     S       + L + ++   GR+  
Sbjct: 625 LKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHT 684

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 685 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEQGRRIRQA 719

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G  ++ AD + IE R++A +A +   IKAFA G+DI+ +T A+ F  P++ V+ E
Sbjct: 720 FIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSE 779

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +   L +++
Sbjct: 780 QRRSAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIRE 834

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
           +  E    + L G    L           +    +   +      +      +A  +  V
Sbjct: 835 KAAEKGYVETLFGRRLYL---------PEINSSNQMRRKAAERVAINAPMQGTAADIIKV 885

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +  R+                                                 
Sbjct: 886 AMIGIDQAVRNCE----------------------------------------------- 898

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
            DI    M           + VHDE+V E            + + M K       +PL A
Sbjct: 899 -DI---AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIA 942

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 943 EVGVGSNW 950


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 378

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 482 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 542 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 191/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            ID ET S +P+          QA +   +   +           +            + 
Sbjct: 337 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 386

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             L  +L D++   V  N  ++  +F    G+ +       T + +          + + 
Sbjct: 387 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 444

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN      +   GK                               EY   D + T 
Sbjct: 445 ALRHLNRKTMTFQDVCGKGASQLC---------------FDQVDIARATEYAAEDADITL 489

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L +R+ P               E    ++ Q +   G  ID  L+      + +   ++
Sbjct: 490 QLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEI 549

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           ++   +L      +      +    F    +         S  T + +L           
Sbjct: 550 EQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPK 608

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L + +    GR+        A  TGR S      QN+P    
Sbjct: 609 LLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIP---- 663

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  +V AD + IE R++A I+ +
Sbjct: 664 --------------------IRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISED 703

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA GEDI+  T A+ F      VS EQR   KV+   L Y              
Sbjct: 704 ENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMS-----AFGLAG 758

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L +++ +        F  +   + +    + +         + G    L          
Sbjct: 759 NLGIERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWL---------P 809

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                                
Sbjct: 810 EINSPNGPRRQGAERAAINAPMQGT----------------------------------- 834

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                               KL    VQ    D L      A K    +++ VHDE+V E
Sbjct: 835 ---------------AADLIKLAMIAVQ----DWL-----EAEKLQTKMIMQVHDELVLE 870

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+T    V   L  LM         +PL AE    K +
Sbjct: 871 VPETELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 907


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 193/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 403 LAQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLDEASPYAAEDADV 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA    
Sbjct: 506 TLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLD 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVINKTPSGTPSTNEEVLQELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     I+ VS EQR   K +                  
Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 796 YPGVMQYMEDTRSAASEQG--------------------------FVETIFGRRLHLPEI 829

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           +              R            +Q  + DI+ + M                +++
Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       + +LM         +PL AE      +
Sbjct: 881 QVHDELVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 193/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +             +   ++A D+                       +
Sbjct: 353 FAFDTETDSLDYMVTN----------LVGVSFATDEGVAAYVPLAHDYLDAPQQLDRDWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 403 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLNEAAPYAAEDADV 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA   +
Sbjct: 506 TLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     I+ VS EQR   K +                  
Sbjct: 720 GDQALLDAFRDGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 796 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 829

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG---YDIVL 626
           +              R            +Q  + DI+ + M        ++G     +++
Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVGRWIEEHGDGRVKLLM 880

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL A+      +
Sbjct: 881 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVADAGHGDNW 926


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 191/706 (27%), Gaps = 169/706 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            ID ET S   L           A I   +++ +                        + 
Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L D     +  +  ++R +F    GI++       T + +    +  P  L + 
Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                  +    +   GK                                Y   D + T 
Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ---------------IPFSQVPVDKAAAYSCEDSDQTL 500

Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++ + L P  +           E         I   G  ID D +      + Q   +L+
Sbjct: 501 DVHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLE 560

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           ++   +      +      L    F   G+ +V  +      T + +L            
Sbjct: 561 QEAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 619

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   + S       + L++      GR+        A  TGR S      QN+P     
Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 673

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  G+ +   D + IE R++A I+G++
Sbjct: 674 -------------------IRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AF  G D++  T A+ F   + +V+ EQ                            
Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQ---------------------------- 746

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +  L         A    +  TA +     +  ++ G
Sbjct: 747 ----------------RRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQRYPG 790

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V Q  +D                                          RRL   ++   
Sbjct: 791 VWQYMQDTKAQAKARGYVETVF--------------------------GRRLYLPEINSP 824

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                +A     R            +Q  + D++ + M               +++ VHD
Sbjct: 825 NGPRRSAA---ERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHD 875

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V E P+     +   +  +M         +PL AE      + K
Sbjct: 876 ELVFELPEGDVNWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 318 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 367

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                      ++L   L +  V  +  N  ++  +F    G+ 
Sbjct: 368 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 426

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 427 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 475

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 476 -----TLDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 530

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G + +   T  L+  LF   G+  
Sbjct: 531 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 589

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                  +  T + +L        L   L++     S       + L   ++   GR+  
Sbjct: 590 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 649

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 650 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 684

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A+ F   +D+V+ E
Sbjct: 685 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 744

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y               L + +          F+ +   +     +++
Sbjct: 745 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 799

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546
              E    + L G    L           +        +      +      +A  +  V
Sbjct: 800 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 850

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             + + +                   ++GD +                            
Sbjct: 851 AMIGIDKA------------------IRGDDN---------------------------- 864

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
              +   M             VHDE+V E  +         + + M K       +PL A
Sbjct: 865 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 907

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 908 EVGVGDNW 915


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 832 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   ++  T + +           + 
Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA   +
Sbjct: 507 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     ID+VS EQR   K +                  
Sbjct: 721 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 797 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 881

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 882 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/731 (13%), Positives = 193/731 (26%), Gaps = 192/731 (26%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
            + +D ET S            A +A +   + A                           
Sbjct: 459  IAVDTETDSLD----------AHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADATDLF 508

Query: 51   ----------SAMP---------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
                        +P         + L   L +  V+ V  N  ++ ++  +  GI++   
Sbjct: 509  GEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAP- 566

Query: 92   RWICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +  T +++           +       L           G                   
Sbjct: 567  -FDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVAGTG---------------RN 610

Query: 148  TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDR 197
                   A      Y   D + T  L++ + P    E            L  +   +  R
Sbjct: 611  KVTFDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQR 670

Query: 198  GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
            G R+D +++ +L    +Q   +L+E+I +       S      +   LF   G+     +
Sbjct: 671  GIRVDREMLSRLSGDFSQILVRLEEEIQEDAGEKF-SVGSPKQIGDILFGKMGLPGAKKT 729

Query: 258  EG----TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                  T  ++L             IL     S       + L      +     T    
Sbjct: 730  PSGQWATPATLLEELAQAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSL 789

Query: 313  GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             A+ TGR S      QN+P                                +R   +A+ 
Sbjct: 790  AATTTGRLSSSEPNLQNIP------------------------IRTEEGRRIRRAFVAAP 825

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
            G +L+ AD + IE R+LA +A      KAF +G DI+  T +  F  P+ +++ + R   
Sbjct: 826  GNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKEMTPDLRRRA 885

Query: 433  KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            K +                    G+                                   
Sbjct: 886  KTINF--------------GIIYGIS------------------------------AFGL 901

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
            A +  +         K +  +  G+    +   +                          
Sbjct: 902  ADRLGIGREEASAFIKQYFEQFPGIRDYIETTKKSCRDKGYVTTLF-------------- 947

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                         R   Y  ++ +      +   + R+           +Q  + DI+  
Sbjct: 948  ------------GRVCHYPQIRSNNPSERAS---VERQAINAP------IQGSAADIIRR 986

Query: 613  GMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPL 663
             M               ++L VHDE+V E  +        +   +M + P+ A    +PL
Sbjct: 987  AMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPL 1046

Query: 664  KAEGYEAKRYR 674
              E   A  ++
Sbjct: 1047 VVEANAAGNWQ 1057


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 191/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            ID ET S +P+          QA +   +   +           +            + 
Sbjct: 343 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             L  +L D++   V  N  ++  +F    G+ +       T + +          + + 
Sbjct: 393 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN      +   GK                               EY   D + T 
Sbjct: 451 ALRHLNRKTMTFQDVCGKGASQLC---------------FDQVDIARATEYAAEDADITL 495

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L +R+ P               E    ++ Q +   G  ID  L+      + +   ++
Sbjct: 496 QLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEI 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           ++   +L      +      +    F    +         S  T + +L           
Sbjct: 556 EQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L + +    GR+        A  TGR S      QN+P    
Sbjct: 615 LLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  +V AD + IE R++A I+ +
Sbjct: 670 --------------------IRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISED 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA GEDI+  T A+ F      VS EQR   KV+   L Y              
Sbjct: 710 ENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMS-----AFGLAG 764

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L +++ +        F  +   + +    + +         + G    L          
Sbjct: 765 NLGIERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWL---------P 815

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                                
Sbjct: 816 EINSPNGPRRQGAERAAINAPMQGT----------------------------------- 840

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                               KL    VQ    D L      A K    +++ VHDE+V E
Sbjct: 841 ---------------AADLIKLAMIAVQ----DWL-----EAEKLQTKMIMQVHDELVLE 876

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+T    V   L  LM         +PL AE    K +
Sbjct: 877 VPETELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 913


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 193/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 403 LAQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLDEASPYAAEDADV 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA    
Sbjct: 506 TLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLD 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     I+ VS EQR   K +                  
Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 796 YPGVMQYMEDTRSAASEQG--------------------------FVETIFGRRLHLPEI 829

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           +              R            +Q  + DI+ + M                +++
Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       + +LM         +PL AE      +
Sbjct: 881 QVHDELVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 309 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 358

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 359 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 416

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 417 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 461

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 462 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 521

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 522 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 580

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 581 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 637

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 638 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 675

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 676 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 721

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 722 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 751

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 752 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 783

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 784 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 835

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL A+      +
Sbjct: 836 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVADAGHGDNW 882


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 196/703 (27%), Gaps = 162/703 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S + +           A I   ++A +                       ++
Sbjct: 331 FAFDTETTSLRYM----------DAEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGL---PSSL 109
              L   L D     V  N  +++ +       DI  +     T V +           +
Sbjct: 381 LEQLKPLLEDPKHKKVGQNLKYDKNVLANH---DIQLEGIAEDTMVESYVLNSVGTRHDM 437

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                      +    +  G Y   D +
Sbjct: 438 DSLARTYLDEETITYESIAGKGAKQL---------------TFNQIDLESAGPYAAEDAD 482

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             + +  L  +   +  RG  I    + +  + +A+  
Sbjct: 483 ITLRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERM 542

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILSHSNITQL 273
            +L+++  ++  G   +   T  L+  L+   G+         +  T + +L        
Sbjct: 543 AELEKEAHEVA-GEAFNLGSTKQLQAILYDKLGLRVIKKTPKGAPSTAEPVLQELAHEHE 601

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LI+   + S       +TL E +    GR+  +      + TGR S      QN+P 
Sbjct: 602 LPRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAV-TATGRLSSSEPNLQNIP- 659

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G KL+ AD + IE R++A +
Sbjct: 660 -----------------------IRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHL 696

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +GEDI+  T A+ F   +D+V+ +QR   K +   L Y           
Sbjct: 697 SGDRGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMS-----AFG 751

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L++ + +        FE +     +   ++ Q  +    + L G    L       
Sbjct: 752 LSRQLEVDRKTAQEYIDRYFERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYL------- 804

Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +    K L +      +      +A  +     + +                    
Sbjct: 805 --PEINARNKQLQQAAERTAINAPMQGTAADIIKRAMIEVDN------------------ 844

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                           +R              A    +                      
Sbjct: 845 ---------------WLRSEH-----------ASDACMTM----QVHDE----------- 863

Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E  +     V   L   M+   S    +PL  E      +
Sbjct: 864 LIIEVREEAVDKVKDGLVKRMSAAAS--LDVPLLVEAGVGDNW 904


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 169/707 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   L           A I   +++ +                        +
Sbjct: 353 VALDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
              L  +L D +   +  +  ++R +F    GID+       T + +       P +L +
Sbjct: 403 LERLKPWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYA-HDTMLQSYVLEVHRPHNLAS 460

Query: 112 ACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                   +    +   GK                           +    Y   D + T
Sbjct: 461 LAERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVEQAAAYSCEDSDQT 505

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            ++ + L PL +           E +   +   I   G  ID   + +    + Q   +L
Sbjct: 506 LDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276
           +++   +      +      L    F   G+ +V  +      T + +L           
Sbjct: 566 EQEAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPA 624

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL   + S       + L +      GR+        A  TGR S      QN+P    
Sbjct: 625 KILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP---- 679

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G+ +  AD + IE R++A ++G+
Sbjct: 680 --------------------IRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           D  ++AF  G D++  T A+ F   +D+VS EQ                           
Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQ--------------------------- 752

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +   A       +  ++ 
Sbjct: 753 -----------------RRYAKVINFGLIYGMSSFGLARNLGIDNKAAAAYIDRYFQRYP 795

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q   +                                          RRL   ++  
Sbjct: 796 GVKQYMDETKASAKARGYVETVF--------------------------GRRLYLPEINS 829

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                  A     R            +Q  + D++ + M          K    +++ VH
Sbjct: 830 PNGPRRGAA---ERAAINAP------MQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVH 880

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V E P+     +   +  LM         +PL AE      + K
Sbjct: 881 DELVFELPEEESGWLRTEVPRLMAGVAE--LKVPLLAEVGMGPNWEK 925


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 187/703 (26%), Gaps = 161/703 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A I   +++           T              +
Sbjct: 370 VAVDTETTSLDEML----------AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEV 419

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L +  +  +  +  ++R +F    GI++       T + +    +  P  L +
Sbjct: 420 LARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVHKPHGLAS 477

Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   S    +   GK    I         +                  EY   D +
Sbjct: 478 LAERHVGRSGINYEDLCGKGVHQIKFNQVDIAKAA-----------------EYSCEDSD 520

Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T ++ + L P  +           E         I   G  ID   + K    +     
Sbjct: 521 QTLDVHRVLWPQIEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIV 580

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+ +  +L      +      +    F   G+         +  T + +L         
Sbjct: 581 QLEAEAHELAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPL 639

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              IL     S       + L++      GR+        A  TGR S      QN+P  
Sbjct: 640 PAKILEHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP-- 696

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   +A  G  +  AD + IE R++A ++
Sbjct: 697 ----------------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLS 734

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  ++AF  G D++  T A+ F   +D+VS EQR   KV+   L Y        +   
Sbjct: 735 EDEALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMS-----SFGL 789

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L ++  +        F+ +   + +    +         + + G    L        
Sbjct: 790 ARNLGIETKAAAAYIDRYFQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYL-------- 841

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                                       +L    V
Sbjct: 842 -PEINSPNGPRRGGAERAAINAPMQGTAADLI---------------------KLSMVKV 879

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           +        AT                             M           + VHDE+V
Sbjct: 880 QEVLDAEKRATK----------------------------MI----------MQVHDELV 901

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E P+     V   +  +M         +PL AE      + K
Sbjct: 902 FEVPEAEVEWVRVEIPRIMAGVAD--LRVPLLAEIGVGPNWDK 942


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/707 (16%), Positives = 205/707 (28%), Gaps = 168/707 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 355 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 404

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 405 VLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 462

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                         A +   EY  +D + 
Sbjct: 463 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 507

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 508 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 567

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++      G + +      L+  LF   GI        ++    T +++L         
Sbjct: 568 EQEAYAAA-GQLFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 627 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 684 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +                  
Sbjct: 722 GDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGL 767

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +   + +     + A+
Sbjct: 768 IYGMGQY------------------------------GLAKSLGIDNLSAKTFIDRYFAR 797

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +  +   E  A                              +     RRL   D+
Sbjct: 798 YPGVAEYMQRTKEQAAAQG--------------------------FVETLFGRRLYLPDI 831

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           +   +    A +   R            +Q  + D++   M + ++          +++ 
Sbjct: 832 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 882

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P++    V T L  LM         +PL AE    + +
Sbjct: 883 VHDELVLEVPESELDLVKTNLPELMADVGKGLLNVPLVAEVGVGENW 929


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
               D ET S   +          QA +   + A                          
Sbjct: 334 FFAFDTETTSLNYM----------QARLVGFSMAIRPGTAAYVPLGHDYPGAPDQLDFEQ 383

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + L   L +  ++ +  N  ++  +     GI +       T + +           +
Sbjct: 384 VLAKLKPILENADILKLGQNLKYDSNILCNH-GITLRGIT-EDTMLESYVLDSVGTRHDM 441

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +  A +    Y   D +
Sbjct: 442 DSLALKYLGRGTTKFQDIAGKGAKQL---------------TFNQIALEQAAPYAAEDAD 486

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             + E  L  +   I   G  I    +      +A   
Sbjct: 487 VTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELAGRL 546

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
           + L+    +L      +      L   LF   G+         +  T + +L        
Sbjct: 547 ESLEARAQELAGQAF-NLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLELAEDYP 605

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++   + S       + L E +  D GR+  +      + TGR S      QN+P 
Sbjct: 606 LPSVLMEYRSLSKLKSTYTDRLPEVIDPDTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 663

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G++++ AD + IE R++A +
Sbjct: 664 -----------------------IRTEEGRRIRQAFVAPEGRRILAADYSQIELRIMAHL 700

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++AF+ G D++  T A+ F   ++ V+ +QR   K +                 
Sbjct: 701 SRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINF--------------G 746

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +   + + +
Sbjct: 747 LIYGMS------------------------------AFGLARQLHIGRGEAQEYIERYFS 776

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV                                          +     RRL   +
Sbjct: 777 RYPGVADYMARTRAEAHERGY--------------------------VETHFGRRLQLPE 810

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +               R            +Q  + DI+ + M               +++
Sbjct: 811 INAKN---KQRQLAAERTAINAP------MQGTAADIIKKAMIAVDAWLQDSSLDALLIM 861

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +T    +   L SLM      A  +PL  E      +
Sbjct: 862 QVHDELVFEVAETAVAQLSEALPSLMADVA--ALEVPLLVEAGVGANW 907


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 313 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 362

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 363 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 420

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A +   +Y   D + 
Sbjct: 421 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 465

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 466 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 525

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+++  +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 526 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 584

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 585 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 641

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 642 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 679

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 680 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 725

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 726 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 755

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 756 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 787

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 788 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 839

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 840 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   ++  T + +           + 
Sbjct: 403 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA   +
Sbjct: 506 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGAPSTNEEVLQELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     ID+VS EQR   K +                  
Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 796 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 829

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 830 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 881 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 926


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 197/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP---- 54
           + ID ET S   +          +A +   ++A +                   +     
Sbjct: 341 IAIDTETTSLNYM----------EAKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVV 390

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE +  V  N  ++  +F    GI +   ++  T + +          ++ 
Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANA-GICLLGVQF-DTMLESYVFNSVASKHNMD 448

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK +                    +  + +    Y   D + 
Sbjct: 449 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQISLETAAPYAAEDADI 493

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L    +            E  L     TI  +G  ID  L+ +  E +A++  
Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKID 553

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+    ++      +      L+   F   G          +  T + +L    +    
Sbjct: 554 ELEHKAHEIAGQAF-NLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 613 PKIILEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 669

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  GKK++ AD + IE R++A ++
Sbjct: 670 ----------------------IRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLS 707

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F+    +V+ +QR   K +   L Y            
Sbjct: 708 QDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMS-----AFGL 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F+ +     +    +    +      L G    L        
Sbjct: 763 AKQLDIPRSEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYL-------- 814

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 815 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 850

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +  +   T G              I+   M           + VHDE+V
Sbjct: 851 ---------NIANWIETETDGE-------------II---MI----------MQVHDELV 875

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +    S+   +C LM         + L AE      +
Sbjct: 876 FEVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/711 (14%), Positives = 197/711 (27%), Gaps = 167/711 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +             +   + A                          
Sbjct: 347 TVAVDTETTGLNEMLC----------DLVGISLAVAPGEACYIPLAHLAEDGGEGLFASD 396

Query: 51  ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
                          L   L D +VM +  N  ++  +F +  GI+I       T +++ 
Sbjct: 397 AKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY-GIEIAP--IDDTMLMSY 453

Query: 102 TNGLP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQ 154
                     +       L  +    K     GK+ I         +  Y    A+  ++
Sbjct: 454 ALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDKATGYAAEDADITLR 513

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
               F     R       +++ L      ER L  + + +  RG ++D   + ++    A
Sbjct: 514 LALTFKPQLHRAHVT--RVYETL------ERPLVPVLKAMEMRGIKVDRATLSRMSGKFA 565

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI 270
           Q+  +L+E+I  L      +      L   LF    +      +     T   +L     
Sbjct: 566 QKMAELEEEIHALAGEKF-NVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVLEDLAT 624

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  +L+    S       + L E ++ D GR+  +    GA+ TGR +      QN
Sbjct: 625 EHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAGAN-TGRLASNDPNLQN 683

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  LV  D + IE R+L
Sbjct: 684 IP------------------------VRSEEGRRIREAFVAPEGHTLVSLDYSQIELRIL 719

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A +A  D   +AF +G DI+  T ++ FN P+D+++ + R   K +              
Sbjct: 720 AHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAIN------------- 766

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G+                                   A   ++     +     
Sbjct: 767 -FGVIYGISGF------------------------------GLARNLRIPRAEAQGFIDR 795

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +  +  G+ Q   D  +                                 +     R + 
Sbjct: 796 YFERFPGIKQYMDDTVKFA--------------------------NEHKRVETMFGRVIH 829

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIV 625
                 +            R            +Q  + DI+   M        K    ++
Sbjct: 830 TP----EIGAKGPRAGFAKRAAINAP------IQGTAADIIRRAMVRMPDAIAKLPAKML 879

Query: 626 LTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
           L VHDE++ E  D     +  +   +M     P     +PL  +  +   +
Sbjct: 880 LQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVKLDVPLVVDAGQGANW 930


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   ++  T + +           + 
Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA   +
Sbjct: 507 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLHELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     ID+VS EQR   K +                  
Sbjct: 721 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 766

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 797 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 830

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 881

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 882 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 197/707 (27%), Gaps = 169/707 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           +   D ET S            A +A +   ++A             +            
Sbjct: 316 RFAFDTETTSLV----------ATRADLVGISFAIKPGEGWYLPVGHRYLGVPEQLDRAL 365

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           +   L   + D  +  +A N+ ++ ++ ++  G+++       T + +           L
Sbjct: 366 VIDKLRPLMADTQLAKIAQNAKYDLLVLRRA-GLEVAGLSC-DTMLASYLANPAAKSHGL 423

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L +         GK       +                   +    Y   D +
Sbjct: 424 DTLASELLGYRTIGYTEVTGKGKKQIGFEEV---------------EIEKATVYATEDAD 468

Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T  L  +L P              E  L  +   +  +G RID D +  L   +     
Sbjct: 469 ITLRLADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLA 528

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275
            L+ +I +L+ G   +      L   LF    +     ++    T   +L++        
Sbjct: 529 TLEGEIHELS-GRSFNVASPKQLGEVLFEHLKLPRGKKTKTGWSTDVEVLTNLAEEHPIA 587

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +L+  + +       + L + +  D GR+  +      + TGR S      QN+P   
Sbjct: 588 ARVLDYRSVAKLKSTYCDALPKLIHPDTGRIHTSFNQAV-TATGRLSSSDPNLQNIP--- 643

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   + + G  L+ AD + +E R+LA +A 
Sbjct: 644 ---------------------IRTEEGRRIREAFVPAEGNLLLAADYSQVELRILAHMAD 682

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           E    ++FA+GEDI+  T ++ F   ++ V+ E R   K +                   
Sbjct: 683 EPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTIN--------------FGVL 728

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A    +     +     + A++
Sbjct: 729 YGMS------------------------------AFGLAKSLGIARKEAQTYIDNYFARY 758

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             VL+  +               +                           RR    ++ 
Sbjct: 759 PKVLEFMEAKKAEAREKQYVTTLL--------------------------GRRCAVPEIA 792

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTV 628
                +     +               +Q  + DI+   M    +          +VL V
Sbjct: 793 SKNGAVRGYAERN---------AINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQV 843

Query: 629 HDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
           HDE+V + P     +V  L    M         +PL  +    + +R
Sbjct: 844 HDELVFDMPAAEQAAVENLVREQMEHAFE--LDVPLLVDMGVGRNWR 888


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/709 (15%), Positives = 207/709 (29%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 378

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +  A Q   +Y   D + 
Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALQEAAQYAAEDADV 481

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 482 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 542 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    PID+VS EQR   K +                  
Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGGNW 902


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/696 (14%), Positives = 190/696 (27%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQS--AMPSDL 57
             L +D ET S  P+          +A +   ++A + +           +    +    
Sbjct: 348 KILSLDTETTSTNPM----------EAELVGLSFAVEPKKAFYVPVPAKHEDAVNLVKIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E ++ V  N  ++  + +   GI++       T +        L  ++      
Sbjct: 398 KPLYENEEIVKVGQNIKYDMEVLRNY-GIELKG-PMFDTMIAHYVLQPELRHNMDYMAEV 455

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN+     +      LI    K   +      T             Y   D + T +L 
Sbjct: 456 YLNYQTIHIE-----KLIGERGKNQKNMRDLSPTD---------VYLYACEDADITLQLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G RID + + +  E   +    L+  I
Sbjct: 502 NALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +L  G   +      +   LF    I +    ++     T +  L           LIL
Sbjct: 562 HELA-GESFNVSSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAGNEIVTLIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 DYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQTV-TATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G     +R C I  +G     AD + IE RV+A ++G+   
Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G DI+  T AK +   +  V++++R   K     + Y               L 
Sbjct: 716 IEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLG 770

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           + +          F  + Q   +    +    E    +              R     + 
Sbjct: 771 IDRNEAKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETFFHR---------RRYLPDIN 821

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +                                                +     
Sbjct: 822 SRNATVRGFAERNA----------------------------------------INAPIQ 841

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                  ++   R Y     EN +Q                    ++L VHDE+      
Sbjct: 842 GSAADIIKVAMIRIYKRFKREN-IQ------------------SKMILQVHDELNFSVLP 882

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                V  +    M         +PL A+G   K +
Sbjct: 883 EEKEQVERIVMEEMQNAYP--LRVPLIADGGWGKNW 916


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|294840299|ref|ZP_06784982.1| DNA polymerase I [Acinetobacter sp. 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
          Length = 923

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 VLAQIKPILENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/707 (15%), Positives = 194/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLL 58
             ID+ET S  P           +A +   A +      +      +       +P  L+
Sbjct: 316 FAIDLETTSLNP----------REARVVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALV 365

Query: 59  -----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
                  L+D     +  N  ++  +  +  G ++    W  T + A           L 
Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVL-RMAGFEMEGI-WCDTMLAAYLVNPARNSQGLD 423

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L+          G                  C            G Y   D +A
Sbjct: 424 ALALEYLDHRMISYAEVAGSG---------------KCELNFSEVDLDRAGPYSCEDADA 468

Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L+P            D E  L  +   +   G ++D+DL+ +L     ++  +
Sbjct: 469 TYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIE 528

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274
           L+  I +   G   +      L   LF   G+ +   ++      T    L         
Sbjct: 529 LEAQIHEHCGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEV 587

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L   + S       + L + V    GR+  +      + TGR S      QN+P  
Sbjct: 588 ARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIP-- 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                   G     +R   IA  G  ++ AD + IE RVLA ++
Sbjct: 645 ----------------------IRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+    +AFA GEDI+  T ++ F    + V+ E R                        
Sbjct: 683 GDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQA--------------------- 721

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  +  +         A +  +     +    ++  +
Sbjct: 722 -----------------------KVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H G                                           +     RRL   ++
Sbjct: 759 HSGARSFLDSCIREAEVCG--------------------------FVTTIMGRRLCIPEI 792

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                 +     +               +Q  + DI+   M          +    +++ 
Sbjct: 793 ASKNGNVRAFAQRN---------AVNYPIQGSAADIIKAAMLRVIRRMQQERVASRLIMQ 843

Query: 628 VHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+     +  L    M         +PLK +      +
Sbjct: 844 VHDELVFEVPEAERDLMEELVRTEMEGALP--LSVPLKVDLNFGLNW 888


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  ++  +  +  GI++   +   T + +           + 
Sbjct: 403 LAQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +         Y   D + 
Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELDEASPYAAEDADV 505

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA    
Sbjct: 506 TLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLD 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +AS G K++  D + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRIRQAFVASTGYKILAVDYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     I+ VS EQR   K +                  
Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     +                              +     RRL   ++
Sbjct: 796 YPGVMQYMEDTRSAASEQG--------------------------FVETIFGRRLHLPEI 829

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           +              R            +Q  + DI+ + M                +++
Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       + +LM         +PL AE      +
Sbjct: 881 QVHDELVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|294839290|ref|ZP_06783973.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013113]
 gi|294858990|ref|ZP_06796759.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013150]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
          Length = 923

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 192/701 (27%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          +A +   ++A +                       A+
Sbjct: 320 FAFDTETTSLNYM----------EAKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAV 369

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
            + +   L D     V  N  ++  +     GI +    +  T + +           + 
Sbjct: 370 LAQMKPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDY-DTMLESYVLDSTATRHDMD 427

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +    +   GK                      +    +  G Y   D + 
Sbjct: 428 SLALKYLGQNTIHFEDIAGKGAKQL---------------TFNQVKVEEAGPYAAEDADI 472

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   I  +G  +  +++ +    +    +
Sbjct: 473 TLRLHQALWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLE 532

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L     +L      +      L   LF    + +       +  T + +L    +    
Sbjct: 533 ELKSAAYELAGQEF-NLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEEVLVELALDYPL 591

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L   + S       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 592 PKLLLEYRSLSKLKSTYTDKLPGMVNPQTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 648

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 649 ----------------------IRTEEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLS 686

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF  G+D++  T A+ F   +D+VS +QR   K +   L Y            
Sbjct: 687 DDPSLLTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMS-----AFGL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L L +          FE +     +    +    E    + L G    L +   R K
Sbjct: 742 AKQLHLGRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNK 801

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                     +       +      SA  +                      R ++  D 
Sbjct: 802 --------MRVQAAERTAINAPMQGSAADIIK--------------------RAMLSVDQ 833

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             +    N                        +R I+                     +V
Sbjct: 834 WLEQGDAN------------------------ARMIM-----QVHDE-----------LV 853

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +    +V   +C LM+     A  +PL  E      +
Sbjct: 854 LEVANDEVDAVSNQVCRLMSGAAELA--VPLLVEAGVGDNW 892


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/707 (15%), Positives = 202/707 (28%), Gaps = 161/707 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 353 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F     I +       + + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIA-GDSMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I+      + +  Y    A+     +        D 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQISFADVAIVQATEYAAQDADFALRLEAHLRAQMDDK 520

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 521 QLEM--------YEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 572

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 573 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 631

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 632 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 681

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 682 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 726

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F T  + VS EQR   K +                    G+   
Sbjct: 727 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFG--------------LIYGMGQY 772

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             ++++   +                                 +     + A++ GV + 
Sbjct: 773 GLAKSLSIDNIS------------------------------AKNFIDRYFARYPGVAEY 802

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E  A                              +     RRL   D+    +  
Sbjct: 803 MQRTKEQAAAQG--------------------------FVETLFGRRLYLPDIHNKNA-- 834

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------------TKNGYDIVLT 627
             A +   R            +Q  + D++   M +                    +++ 
Sbjct: 835 -NARAGAERAAINAP------MQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIMQ 887

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+     V   L  +M K       +PL AE      +
Sbjct: 888 VHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 934


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 192/703 (27%), Gaps = 168/703 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSD 56
            +D ET S            A  A +   + +             +          + + 
Sbjct: 370 AVDTETTSLD----------AFAAELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLAR 419

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114
           +  +L   T + V  N  ++  +F    GI +       T + +      LP ++ +   
Sbjct: 420 MKSWLESATHLKVGQNLKYDSHIFANY-GITLKGV-VFDTLLESYVLESHLPHNMDSLAE 477

Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       +   GK +                         ++  +Y   D + T  L
Sbjct: 478 RHLGMKTIRYEEVCGKGVHQIG---------------FDQVDLKIATDYAAEDADITLRL 522

Query: 174 FKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              L P               E     +   +   G RID  L+ K  + + +   +L+ 
Sbjct: 523 HLELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEG 582

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLI 278
           +I KL      + +    +   LF    +         +  T + +L            I
Sbjct: 583 EIHKLAGQPF-NIQSPKQIAEILFGQLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPARI 641

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+  + +      +  L        GR+        A  TGR +      QN+P      
Sbjct: 642 LDYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATA-VTGRLASSDPNLQNIP------ 694

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I + G KL+ AD + IE R++A IA ++ 
Sbjct: 695 ------------------VRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDEN 736

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AF +G+D++  T A+ F  P+D VS EQ                             
Sbjct: 737 LLTAFRDGKDVHQATAAEIFGVPLDDVSSEQ----------------------------- 767

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                            + +  +  L         A    +  +A +     +  ++ GV
Sbjct: 768 ---------------RRYAKVINFGLIYGMSAFGLAGNLGIECSAAQNYIAKYFDRYPGV 812

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            Q  +                                           RRL   ++KG  
Sbjct: 813 AQYMERTRLEARENGYVETVF--------------------------GRRLWSPEIKGSN 846

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631
                      R            +Q  + D++   M               ++L VHDE
Sbjct: 847 GPRRQGA---ERAAINAP------MQGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDE 897

Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V + P      +   L +LM         +PL         +
Sbjct: 898 LVFDVPLDEIELLQAKLPNLMCHVAQ--LKVPLAVSIGIGDNW 938


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/707 (16%), Positives = 202/707 (28%), Gaps = 168/707 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 350 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 400 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 457

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                         A +   EY  +D + 
Sbjct: 458 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 502

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 503 ALRLDAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 562

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 563 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 621

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 622 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 678

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 679 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 716

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +                  
Sbjct: 717 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGL 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +   + +     + A+
Sbjct: 763 IYGMGQY------------------------------GLAKSLGIDNLSAKTFIDRYFAR 792

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV +  +   E  A                              +     RRL   D+
Sbjct: 793 YPGVAEYMQRTKEQAAAQGY--------------------------VETLFGRRLYLPDI 826

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
           +   +    A +   R            +Q  + D++   M + ++          +++ 
Sbjct: 827 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 877

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+     V   L  +M K       +PL AE      +
Sbjct: 878 VHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 924


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 200/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  +   +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGNNW 919


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 202/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++ D    +      +   LF   GI     +      T +S+L        
Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   + S+M         +PL  E  + + +
Sbjct: 877 DELVFEADQNIAEELSKQIASVMESVVE--ISVPLVVEVGQGQNW 919


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 96/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +          QA +   ++A                         
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLWHDYTGAPAQLDKE 373

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
            +  +L   L D     +  N  ++  +  K  G+ I +K +  T + +           
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L       +   GK +                  + +         Y   D 
Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL + E             L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L++   KL      +      L+  L+    + +   +      T +++L    +  
Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +IL   + +       + L   V    R   T      + TGR S      QN+P 
Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + +E R++A +
Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHV 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   IKAF    DI+  T A+ F   +++V+ EQR   K +                 
Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +  +     +     +  
Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +  + +                                   +     RR+   D
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +         A  +               +Q  + DI+   M   +           +++
Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +   M +    A  +PL  +      +
Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/700 (16%), Positives = 196/700 (28%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A I   +++                          +
Sbjct: 362 VALDTETDSLDGMR----------ARIVGLSFSVQPYEACYIPLAHTYPGAPDQLPLDEV 411

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L D +   +  N  ++  +F    GI +       T + +       P SL++
Sbjct: 412 LAALKSWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGY-VHDTLLQSYVLEAHKPHSLES 469

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L+      +   GK                               EY   D + T
Sbjct: 470 LASRHLDRKGLSYEDVAGKGAQQ---------------IPFAQVELTRATEYSGEDSDMT 514

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++ + L P  +            E    ++   I   G  ID  L+ +    +AQ    
Sbjct: 515 LDVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVA 574

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275
           L+++   L      +      +   LF   GI     +      T + +L+         
Sbjct: 575 LEQEAHALAGQPF-NLGSPKQIGEILFNKLGIPAKKKTASGAPSTDEEVLAELAADYPLP 633

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +L   + +       + L   V++  GR+        A  TGR +      QN+P   
Sbjct: 634 AKLLEHRSLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVA-VTGRLASNDPNLQNIP--- 689

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   IA  G  ++ AD + IE R++A I+ 
Sbjct: 690 ---------------------IRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHISE 728

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA G D++  T ++ FN P+ +VS EQR   KV+   L Y  G          
Sbjct: 729 DPGLLKAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMG-----AFGLA 783

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L ++Q +        F  +   + +    + +  E    + L G    L         
Sbjct: 784 SNLGIEQKAAKDYIDRYFARFAGVKRYMDETRARAKELGYVETLFGRRIYL--------- 834

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +         G                                               
Sbjct: 835 PEINGGNGPRRTGAERQAINAPMQGT---------------------------------- 860

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                KL    VQ            +A +    +V+ VHDE+V 
Sbjct: 861 ----------------AADLIKLAMIAVQ---------AALDAQQRATCMVMQVHDELVF 895

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+         +  LM         +PL AE      +
Sbjct: 896 EVPEAELDWARTAVPELMAGVAE--LKVPLLAEVGVGANW 933


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +          QA +   ++A                         
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
            +  +L   L D     +  N  ++  +  K  G+ I +K +  T + +           
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L       +   GK +                  + +         Y   D 
Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL + E             L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L++   KL      +      L+  L+    + +   +      T +++L    +  
Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +IL   + +       + L   V    R   T      + TGR S      QN+P 
Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + +E R++A I
Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   IKAF    DI+  T A+ F   +++V+ EQR   K +                 
Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +  +     +     +  
Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAKEYIDIYFK 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +  + +                                   +     RR+   D
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +         A  +               +Q  + DI+   M   +           +++
Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +   M +    A  +PL  +      +
Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/709 (14%), Positives = 200/709 (28%), Gaps = 166/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           + +D ET S   +           A +   + A +           +             
Sbjct: 348 VAVDTETTSLNEMT----------ADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKL 397

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D  ++ +  N  ++  +F +     +       T +L+   
Sbjct: 398 AEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARY---GVAVAPIDDTMLLSYAM 454

Query: 104 G---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+ +    K  +  GK+ I        ++  Y    A+  ++ W
Sbjct: 455 HGGLHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVAIDEATAYAAEDADITLRLW 514

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           QLF     R    T  +++ L      ER L  +   +   G ++D +++ ++    AQ+
Sbjct: 515 QLFKPQLHRAQVTT--VYETL------ERPLVPVLAEMEMHGVKVDREVLSRMSNAFAQK 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
              L+ +I +L      +      +   LF    ++           T   +L       
Sbjct: 567 MAGLEAEIHELAGEPF-NVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLEDLATEH 625

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                IL+    S       + L   ++ D GR+  +    GA+ TGR +      QN+P
Sbjct: 626 ELPARILDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQNIP 684

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G  L+  D + IE R+LA 
Sbjct: 685 ------------------------VRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAH 720

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA      +AFA+G DI+  T ++ F+ P+D+++ E R   K +                
Sbjct: 721 IADIPALKQAFADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINF-------------- 766

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 767 GVIYGISGF------------------------------GLARNLRIPRAEAQEFIDRYF 796

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+     D                                    +     RR+   
Sbjct: 797 ERFPGIRTYMDDTIAFAKEHG--------------------------FVQTLFGRRIHTP 830

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + +          R            +Q  + D++   M             ++L 
Sbjct: 831 ----EINAKGPHAGFARRAAINAP------IQGTAADVIRRAMVRMPDAIRDLPAKMLLQ 880

Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           VHDE++ E  +     ++     +M     P+    + L  +      +
Sbjct: 881 VHDELLFEVAEEAVEDTIAAARDIMEGAADPAVRLDVRLVVDAGRGANW 929


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +          QA +   ++A                         
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
            +  +L   L D     +  N  ++  +  K  G+ I +K +  T + +           
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L       +   GK +                  + +         Y   D 
Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL + E             L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSLELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L++   KL      +      L+  L+    + +   +      T +++L    +  
Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +IL   + +       + L   V    R   T      + TGR S      QN+P 
Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + +E R++A I
Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   IKAF    DI+  T A+ F   +++V+ EQR   K +                 
Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +  +     +     +  
Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +  + +                                   +     RR+   D
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +         A  +               +Q  + DI+   M   +           +++
Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +   M +    A  +PL  +      +
Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/715 (14%), Positives = 211/715 (29%), Gaps = 171/715 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +   +         T +            
Sbjct: 347 YVAVDTETTGLNEMI----------AELVGISLCVEAGQACYIPLTHKSAASDDLFGSDE 396

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                       + L   L+D  V+ +  N  ++  +F +   +DI       T +++  
Sbjct: 397 MAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFAR---LDIDVAPIDDTMLMSYA 453

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ I        D+  Y    A+  ++ 
Sbjct: 454 MNAGKHNHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADITLRL 513

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ F      +   T  +++ +      ER L  +   +   G ++D D + ++    AQ
Sbjct: 514 WQQFKPQLHMNRVTT--VYETM------ERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQ 565

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---------GTLKSILS 266
           +   L+++I ++      +      L   LF   G+++ D  +          T   +L 
Sbjct: 566 KMAGLEDEIQEMAGRPF-NVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGADVLE 624

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVF 325
                      IL+    S       + L E ++   GR+  +    GA+ TGR +    
Sbjct: 625 DLATLHDMPRRILDWRQLSKLKSTYTDALQEHINAETGRVHTSYSIAGAN-TGRLASTDP 683

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   +A +GK +V  D + IE
Sbjct: 684 NLQNIP------------------------VRSEEGRRIREAFVAEDGKVIVSLDYSQIE 719

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA IAG D   +AF +G DI+  T ++ F+ P+D+++ + R   K +          
Sbjct: 720 LRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINF-------- 771

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A   ++     + 
Sbjct: 772 ------GVIYGISGF------------------------------GLARNLRIPRGEAQG 795

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               +  +  G+ +   D                                 + ++     
Sbjct: 796 FIDRYFERFPGIRKYMDDTVAFAKE--------------------------NSYVQTLFG 829

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----G 621
           R++       + +          R            +Q  + D++   M           
Sbjct: 830 RKINTP----EINAKGPHAGFAKRAAINAP------IQGTAADVIRRAMIRMPDAIAGLP 879

Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             ++L VHDE++ E  +     +      +M     P+    + L  +  +   +
Sbjct: 880 AKMLLQVHDELIFEVEEGAVDDLITAARDVMENASDPAVKLDVKLAVDAGQGANW 934


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 202/709 (28%), Gaps = 166/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           L +D ET     +           A +   +   +         T +             
Sbjct: 348 LAVDTETTGLNEMV----------ADLVGISLCIEPGEACYIPLTHRDGASDDLFGSDAL 397

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D +++ +  N  ++  +F +     +       T +++   
Sbjct: 398 AEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY---GVDVAPIDDTMLMSYAM 454

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L  +    K  +  GK+ I        ++  Y    A+  ++ W
Sbjct: 455 HAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKVPIDEATAYAAEDADITLRLW 514

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF     R    T  +++ L      ER L  +   +   G ++D D++ ++    AQ+
Sbjct: 515 KLFKPQLHRVQVTT--VYETL------ERPLVPVLAQMEMHGIKVDRDVLSRMSNAFAQK 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
              L+ +I +L  G   +      L   LF   G++           T   +L       
Sbjct: 567 MAALEAEIHELA-GETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLEDLATEH 625

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +L+    S       + L   ++ D GR+  +    GA+ TGR +      QN+P
Sbjct: 626 ELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGAN-TGRLASTDPNLQNIP 684

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G  LV  D + IE R+LA 
Sbjct: 685 ------------------------VRTEEGRRIREAFVAEPGNVLVSLDYSQIELRILAH 720

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA      +AFA+G DI+  T ++ F+ P+D+++ E R   K +                
Sbjct: 721 IADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAIN--------------F 766

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 767 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 796

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +   D                                    +     R++   
Sbjct: 797 ERFPGIRRYMDDTIAFAKEHGY--------------------------VQTLFGRKIHTP 830

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + +          R            +Q  + D++   M             ++L 
Sbjct: 831 ----EINAKGPHAGFARRAAINAP------IQGTAADVIRRAMVRMPEAIDGLPAKMLLQ 880

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAKRY 673
           VHDE++ E  +        +   +M   P  A    + L  +  +   +
Sbjct: 881 VHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLDVKLTVDAGKGANW 929


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/730 (15%), Positives = 207/730 (28%), Gaps = 194/730 (26%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEP--------VKLWDRTEQ---- 50
           +  D ET S  P+          QA +   + A  D+                T +    
Sbjct: 396 VAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGSG 445

Query: 51  -----------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
                            +   + L   L DE V+ +A N  ++ +L K+     +  + +
Sbjct: 446 GDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRH---GVVMQSF 502

Query: 94  ICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDC 147
             T +++           +       L  +    K   G  K+ I         +     
Sbjct: 503 DDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVAGSGKSSITFDFVDIDKATA--- 559

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDR 197
                         Y   D + T  L+  L P              ER L  +   + +R
Sbjct: 560 --------------YAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVPVLAHMEER 605

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D  ++ +L   +AQ+    +E++ +L  G   +      L   LF   G+     +
Sbjct: 606 GITVDRQILSRLSGELAQKAAAFEEEVYQLA-GERFNIGSPKQLGDILFGRMGLPGGSKT 664

Query: 258 E----GTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           +     T   +L             I++    +       + L   V    +   T    
Sbjct: 665 KTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYAL 724

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                                +R+  I++ 
Sbjct: 725 ASTTTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTP 760

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KL+ AD + IE RVLA +A       AF NG DI+  T ++ F  P++ +  E R   
Sbjct: 761 GHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRA 820

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +                    G+                                   
Sbjct: 821 KAINF--------------GIIYGIS------------------------------AFGL 836

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A +  +  +      K +  +  G+    +                              
Sbjct: 837 ANQLSIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIF-------------- 882

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR  Y +++     +        R            +Q  + DI+  
Sbjct: 883 ------------GRRAHYPEIRSSNPSMKAF---NERAAINAP------IQGSAADIIRR 921

Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPL 663
            M          K    ++L VHDE++ E  +     ++  + S+M     P+ +  +PL
Sbjct: 922 AMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAMPAISMRVPL 981

Query: 664 KAEGYEAKRY 673
           K +   A  +
Sbjct: 982 KVDARAADNW 991


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 191/703 (27%), Gaps = 158/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
           +    D ET     L           A +   ++A                         
Sbjct: 354 NVFAFDTETDGLDTL----------SANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRA 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
           ++   L   L DE V+ V  N  F+  +  +  GI++    +  T + +           
Sbjct: 404 SVLERLKLLLEDEKVLKVGQNLKFDMGVLARY-GINLRGIAY-DTMLESYVLDSVGGRHD 461

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + N     L       +   GK                      +  A      Y   D 
Sbjct: 462 MDNLADRYLGHKTITFEEIAGKGKNQL---------------TFNQIALAQAALYAAEDA 506

Query: 168 EATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L   + P             + +  L  +   I   G  ID  ++    + + + 
Sbjct: 507 DVTLRLHLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDPAILSVHSQELTKR 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
             +L+    +L      +      L+  L+    + ++  +      T + +L+   +  
Sbjct: 567 LGELEIQAHELAGEPF-NLVSLKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDY 625

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +IL     +       + L   ++   GR+  +      + TGR S      QN+P
Sbjct: 626 PLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIP 684

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G ++V AD + IE R++A 
Sbjct: 685 ------------------------VRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAH 720

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   +KAFA G+DI+  T A+ F  P+DKV+ EQR   K +   L Y          
Sbjct: 721 LSQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMS-----AF 775

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L + +          FE +     +    + Q  E      L G    L      
Sbjct: 776 GLARQLGVPRGEAQRYMDRYFERYPGVLDYMERTRQQAAEQGYVTTLDGRRLYL------ 829

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                         +                                        +    
Sbjct: 830 ---PDARSSNGMRRKAAERAAINAPMQGTAADII---------------------KRAMI 865

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           +V                       L   I+Q                        VHDE
Sbjct: 866 EVDAWIQEQGQP-------------LVRMIMQ------------------------VHDE 888

Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E  ++   +    +  LM  + + A  +PLK +      +
Sbjct: 889 LVFEVHESVIDASSQRIRELMEGSMALA--VPLKVDVGVGANW 929


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/707 (14%), Positives = 186/707 (26%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D ET S   +          QA I   A A   +                      +
Sbjct: 333 FAFDTETTSLDYM----------QAEIVGVALAVATDRAAYIPLAHDYPGAPEQLDRDLV 382

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
            + L   L D     V  N  ++  +     GI +       + + +       S   + 
Sbjct: 383 LTRLRPLLEDSQRAKVGQNLKYDANVLANY-GIALRGIA-HDSMLESYVLDATGSRHDMD 440

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +  A +    Y   D   
Sbjct: 441 TLALKYLGEKTTHFEEVAGKGAKQ---------------ITFNAVAIEQAAPYAAEDAAV 485

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P  + E             L  +   I   G R+D  L+      + +   
Sbjct: 486 TLKLHQTLWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLA 545

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
            L++    L      +      L   LF    +         +  T + +L+   +    
Sbjct: 546 ILEQSAHDLAGQAF-NLGSPKQLGEILFQKLELPVLKKTPKGAPSTAEDVLAELALDYPL 604

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++   + S       + L + +    GR+  +      + TGR S      QN+P  
Sbjct: 605 PAVLMEYRSLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 661

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R    A  G+ +V AD + IE R++A ++
Sbjct: 662 ----------------------IRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLS 699

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF    D++  T A+ F  P++ VS +QR   K +                  
Sbjct: 700 QDKGLLGAFGANLDVHSATAAEVFGVPLEDVSSDQRREAKAINF--------------GL 745

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A + +L     +     +  +
Sbjct: 746 IYGMS------------------------------AFGLAKQLRLGRHEAQAYIDRYFER 775

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV        E                                 +     RRL   ++
Sbjct: 776 YPGVADYMTQTRELAHSQGY--------------------------VETLFGRRLYLPEI 809

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLT 627
                          R+           +Q  + DI+   M    +          +++ 
Sbjct: 810 N---------ARNKQRQMAAERTAINAPMQGTAADIIKLAMIAVDEWLSKTDIDALMIMQ 860

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  DT   ++   +  LM    S    +PL  E      +
Sbjct: 861 VHDELVFEVADTEVATLTSAIPDLMADVAS--LDVPLLVEAGVGTNW 905


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 193/708 (27%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           ++  D ET S   +           A I   ++A++                        
Sbjct: 334 RVAFDTETTSLDAMR----------AEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAE 383

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
               L  +L  E    + H+  ++R +     GI +       T + +           L
Sbjct: 384 TLERLKPWLESERHGKLGHHLKYDRNVLGNH-GITLRGI-VDDTLLESFCLDAGANRHDL 441

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L++     +   GK +                          +  +Y   D +
Sbjct: 442 DSLAERHLDYKTTHYEDVAGKGVKQ---------------IPFAEVDIGIATDYAGEDAD 486

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
              +L     P             + E  L  +   I   G ++D D + +  + +  E 
Sbjct: 487 ICLQLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEM 546

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
           ++++ +  +   G   +      ++  LF   G+            T + +L        
Sbjct: 547 ERIEREAFEEAGGEF-NLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMADDYA 605

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL     S        TL   +    GR+  +    GA  TGR S      QN+P 
Sbjct: 606 LPRLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGA-ATGRLSSSEPNLQNIP- 663

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                      A   +R   IA  G +L+ AD + IE R++A +
Sbjct: 664 -----------------------VRTEAGRRIRRAFIAEEGHQLLAADYSQIELRIMAHL 700

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   +KAFA G+DI+  T A+ F    ++VS +QR   K +                 
Sbjct: 701 SQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINF--------------G 746

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A    +           + +
Sbjct: 747 LIYGMS------------------------------AWGLARNLGIEQGEAREYIDRYFS 776

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +                                     +     RRL   +
Sbjct: 777 RYPGVHDYMERARASGRENGY--------------------------VETLFGRRLYLPE 810

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           +            Q  R            +Q  + DI+   M     +         +++
Sbjct: 811 INSRNGARRQ---QSERVAINAP------MQGTAADIIKRAMVRVAHDLEDTGIDARMIM 861

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  D     + TL    M+        + L  +      +
Sbjct: 862 QVHDELVFEVADAAVEDLTTLVRKAMSGAAD--LDVELVVDVGVGANW 907


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/705 (16%), Positives = 197/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   + + +           +            + 
Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 447 ALRHLGEKTIKYEDVAGKGAQQIG---------------FDEVALDKAAEYAAEDADITL 491

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P             + E     + + +   G  ID + + +    IA    +L
Sbjct: 492 RLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEIATRLIQL 551

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           + +  +L  G   +      +    F   G+         +  T + +L           
Sbjct: 552 EGEAYELAGGEF-NLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVLQKLAEDYPLPK 610

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 611 VLLEHRGLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 665

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G KLV AD + IE R++A I+G+
Sbjct: 666 --------------------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGD 705

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AF+ GEDI+  T ++ FN    +VS +QR + KV+                    
Sbjct: 706 ESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVIN--------------FGLIY 751

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A ++    + A++ 
Sbjct: 752 GMS------------------------------AFGLASNLGITRDAAKMYIDRYFARYP 781

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +   +                                          RRL   ++ G
Sbjct: 782 GVARYMDETRLSAKAKGYVETVF--------------------------GRRLWLPEING 815

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                  A     R            +Q  + D++   M          K G  +++ VH
Sbjct: 816 GNGPRRQAA---ERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVH 866

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE++ E PD     V   L  LM      A  +PL AE      +
Sbjct: 867 DELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGTGLNW 909


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/695 (16%), Positives = 198/695 (28%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   ++A +           +            + 
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +       P  + N 
Sbjct: 389 AKLKPWLESAKHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170
               L       +   GK                +    +     +L    Y +   E T
Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQTLYPQLAAEKT 506

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E         D E     + + +   G  ID + +      IA    +L+ +   L  G
Sbjct: 507 LE-----HVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAYVLAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           ++L     S 
Sbjct: 562 EF-NLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620

Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+ S GR+        A  TGR +      QN+P              
Sbjct: 621 LKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA  G KLV AD + IE R++A I+G++  ++AF+ G
Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQG 715

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F+    +VS +QR + KV+                    G+     + N
Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLASN 761

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +                               +   A +L    + A++ GV +   +  
Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 792 LSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M    K       G  +++ VHDE++ E PD 
Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDE 876

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  LM      A  +PL AE      +
Sbjct: 877 ELPEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 202/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L+     +L P  + E         +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++ D    +      +   LF   GI     +      T +S+L        
Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   + ++M         +PL  E  + + +
Sbjct: 877 DELVFEADQNIADELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 205/702 (29%), Gaps = 160/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   L           A +   + A                          +
Sbjct: 353 FAFDTETDSLDVL----------SANLVGISCADAPGQACYIPLAHDYLDAPRQLDRQYV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE V  +  N  ++  +  +  GI +    +  T + +           + 
Sbjct: 403 LARLQPLLEDEGVAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +    +   EY   D + 
Sbjct: 461 SLAARHLDHKTITFEEIAGKGKGQL---------------TFNQIPLEQAAEYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L +RL P  +GE             L  +   +   G  ID  ++ +  + +A   +
Sbjct: 506 TLQLHQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLE 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
            L++           +   T  L+  LF    + ++  +      T + +L+       A
Sbjct: 566 ALEQQAHSEAGEPF-NLSSTKQLQAILFEKQQLPVLKKTPGGAPSTNEEVLAELADQGYA 624

Query: 275 -KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 625 LPQVILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 682

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + IE R++A +
Sbjct: 683 -----------------------VRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHL 719

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AFA G+DI+  T A+ F  P++ VS +QR   K +   L Y           
Sbjct: 720 SGDKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMS-----AFG 774

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L++ +          FE +    ++    +    +    + L G    L       
Sbjct: 775 LARQLNIGRGEAQRYMDLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYL------- 827

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +        +                 A++ +  M      +    P  R      
Sbjct: 828 --PEINARNGMRRKAAERAAINAPMQGTA--ADIIKRAMIAVDGWLQEAQPEVR------ 877

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                                    M           + VHDE+
Sbjct: 878 -----------------------------------------MI----------MQVHDEL 886

Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E P++   + V  + +LM  + S A  +PLK +    + +
Sbjct: 887 VFEVPESQVEAVVCQVRALMENSLSLA--VPLKVDIGCGENW 926


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +          QA +   ++A                         
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
            +   L   L D     +  N  ++  +  K  G+ I +K +  T + +           
Sbjct: 374 EVLRKLKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L       +   GK +                  + +         Y   D 
Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL + E             L  +   +  RG  +D  ++      ++  
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELSGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L++   KL      +      L+  L+    + +   +      T +++L    +  
Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +IL   + +       + L   V    R   T      + TGR S      QN+P 
Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + +E R++A I
Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   IKAF    DI+  T A+ F   +++V+ EQR   K +                 
Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +  +     +     +  
Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +  + +                                   +     RR+   D
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +         A  +               +Q  + DI+   M   +           +++
Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +   M +    A  +PL  +      +
Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/719 (15%), Positives = 205/719 (28%), Gaps = 184/719 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL----- 57
            + +D ET     +           A +   +   +         T + A   DL     
Sbjct: 359 YVAVDTETTGLNDMI----------ADLVGISMCSEAGKACYIPLTHKDASTDDLFGSDE 408

Query: 58  ---------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                             L D +VM +  N  ++  +F +  GI+I       T +++  
Sbjct: 409 LADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY-GIEIAP--IDDTMLISYA 465

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                    +       L  +    K  +  GK+ I                        
Sbjct: 466 QHAGLHNHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPID---------------- 509

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLV 206
                Y   D + T  L++ L P              ER L  +   +   G ++D D++
Sbjct: 510 -HATPYAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVL 568

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLK 262
            ++    AQ+   L+ +I ++  G   +      +   LF   G++           T  
Sbjct: 569 SRMSNAFAQKMAGLEAEIHEMA-GHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGA 627

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321
            IL            IL+    S       + L + ++ D GR+  +    GAS TGR +
Sbjct: 628 DILEDLATEHEMPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLA 686

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA  GK LV  D 
Sbjct: 687 STDPNLQNIP------------------------IRSEEGRRIREAFIAEEGKVLVALDY 722

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +AG D   +AF +G DI+  T ++ F+ P+D+++ + R   K +      
Sbjct: 723 SQIELRILAHVAGIDSLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINF---- 778

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A   ++  +
Sbjct: 779 ----------GVIYGISGF------------------------------GLARNLRIPRS 798

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +  +  G+ +   D T                               +  + 
Sbjct: 799 EAQGFIDRYFDRFPGIKEYMNDTTAFAK--------------------------ANDRVE 832

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617
               R +   ++    +          R            +Q  + DI+   M       
Sbjct: 833 TLFGRVIHTPNI----NAKGPQAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAI 882

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++ E        +  T   +M     P     +PL  +  +   +
Sbjct: 883 KDQPAKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVVKLDVPLIVDAGQGANW 941


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 200/699 (28%), Gaps = 158/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55
             +D ET S   +           A I   + A +++                 +  + +
Sbjct: 286 FCLDTETTSLDIMA----------AEIVGISLAIEEKKAAYIPFIHTDGSVQLLRDEVFA 335

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
            +   L +  +  +  N  ++  + K   GI +    +  T + +           +   
Sbjct: 336 AIKPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAY-DTMLESYILNSNAGRHDMDTL 393

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                                Y   D + T 
Sbjct: 394 SLKYLGHKTITFEDIAGKGAKQL---------------RFDQIPVDKASVYAAEDADITL 438

Query: 172 ELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           +L  +L P+         +D E  L  +   +  RG  ID + + +  + + +  K L+E
Sbjct: 439 QLHHKLYPMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEE 498

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLI 278
           + ++L      +      L+  LF    I            T +S+L           +I
Sbjct: 499 EAIQLAGKPF-NLSSPKQLQEILFNEQKIPVIAKTPTGQPSTAESVLQELAFDYRLAAVI 557

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     +      ++ L + ++   GR+  +     A  TGR S      QN+P      
Sbjct: 558 LEHRGLTKLVSTYIDALPKKINAETGRVHTSYNQAVA-ATGRLSSSEPNLQNIP------ 610

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R+  IA   + ++ AD + IE R++A ++ ++ 
Sbjct: 611 ------------------IRNEEGRLIRTAFIAPPEQVILAADYSQIELRIMAHLSQDEN 652

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AFANG DI+  T A+ F+   ++V+ EQR   K +   L Y               +
Sbjct: 653 LLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMS-----AFGLAKQI 707

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +++        + F+ + +   +    + Q  E    + L G    L           +
Sbjct: 708 GVERQDAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYL---------PEI 758

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                   +                                 I  P              
Sbjct: 759 NTRNLMRQKAAERTA---------------------------INAPM------------- 778

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAI--SRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               TA   + +      K      QA   +R      M           + VHDE+V E
Sbjct: 779 --QGTAADIIKKAMINIAKWQNA--QATPPAR------MI----------MQVHDELVFE 818

Query: 636 TPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  +    +  LM +       +PL         +
Sbjct: 819 VASQEIEASTVKIRQLMEQAMQ--LSVPLLVSIGTGPNW 855


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 189/702 (26%), Gaps = 161/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD-- 56
             +D ET S   +           A +   +++                     +P D  
Sbjct: 344 FSVDTETTSLNYM----------DAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYV 393

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L  ET   +  N  ++  +  +  GI +   R+  T + +           + 
Sbjct: 394 LNALKPILEAETPAKIGQNLKYDMNVLARY-GITLSGVRF-DTMLESYVLDAAATRHDMD 451

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                                Y   D + 
Sbjct: 452 SLALKYLGQKTIAFEDVAGKGAKQ---------------ITFDQVPLLQAATYAAEDADV 496

Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L + L P             + E  L  +   +   G RID+  + +    + +   
Sbjct: 497 TLKLHQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMA 556

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+ +   L      +      L   L+    + +       +  T +S+L         
Sbjct: 557 ELEAEAHTLAGQPF-NLASPKQLGEILYDQLQLPILKKTPKGAPSTDESVLQDLAHDYEL 615

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L E V+   GR+  +     AS TGR S      QN+P  
Sbjct: 616 PKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVAS-TGRLSSSDPNLQNIP-- 672

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                     +   +R   IA  G  +V AD + IE R++A ++
Sbjct: 673 ----------------------IRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLS 710

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  I AFA G DI+  T A+    P++ V+ + R   K +   L Y            
Sbjct: 711 DDESLIDAFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMS-----AFGL 765

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          F  +     +   ++ Q  +    + L G    L        
Sbjct: 766 ARQLGISREQAQAYMDRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYL-------- 817

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              V    K   +      +      SA  +     + +                     
Sbjct: 818 -PEVRAASKMRRQAAERVAINAPMQGSAADIIKRAMIDIDT------------------- 857

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                          +R +         I+Q                            +
Sbjct: 858 --------------WLRTQ---PAKIRMIMQ-------------VHDE-----------L 876

Query: 633 VSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E P+     ++  +   M+   S    +PL  E      +
Sbjct: 877 VFEVPNDVVPDAIEQIQKRMSGAAS--LKVPLIVEAGTGTNW 916


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/710 (13%), Positives = 191/710 (26%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +             +     + +                        
Sbjct: 346 YVAVDTETTGLNDMI----------VDLVGICLSVEIGEACYIPVGHTNGENDLFGGASL 395

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L+D +++ +  N  ++  +F +    D+       T +L+   
Sbjct: 396 CNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARY---DVNLAPVDDTMLLSYAI 452

Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       LN      K   G  K+ I        D+  Y    A+  ++ W
Sbjct: 453 NGGKHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFDKVSINDAVNYAAEDADITLRLW 512

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF            ++++ L      ER L  +   +   G ++D + + ++    AQ 
Sbjct: 513 KLFKPMLHESSVT--KIYETL------ERPLIPVLAKMEMNGIKVDRNTLSRMSNNFAQS 564

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSN-IT 271
              L+ +I  L      +      L   LF    +      +     T   +L       
Sbjct: 565 MSGLEAEIYNLAGQTF-NVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLEDLASEG 623

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L   ++ + GR+  +    GAS TGR S      QN+
Sbjct: 624 HELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGAS-TGRLSSTDPNLQNI 682

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                            A   +R   IA  G  L+  D + IE R+LA
Sbjct: 683 P------------------------IRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILA 718

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA  D   +AF  G+DI+  T ++ FN P++ +    R   K +               
Sbjct: 719 HIAKIDTLKQAFHEGQDIHALTASQMFNVPLENMDPMVRRQAKAIN-------------- 764

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 765 FGVIYGISGF------------------------------GLARNLRIPRKEAQSFIDTY 794

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     +                                    +     R++  
Sbjct: 795 FERFPGIRTYMDETVSFAKENGY--------------------------VETLFGRKIHT 828

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + +          R            +Q  + D++   M       +     ++L
Sbjct: 829 ----SEINAKGPQAGFAKRAAINAP------IQGTAADVIRRAMVQMPNAISHLPAKMLL 878

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E           +   +M K   P     +PL  +      +
Sbjct: 879 QVHDELIFEVNKDALNETTEVVRNIMEKASEPVVKLDVPLVVDAGFGNNW 928


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 306 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 355

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 356 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 413

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 414 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 458

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 459 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 518

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 519 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 575

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 576 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 633

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 634 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 671

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 672 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 717

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 718 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 747

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 748 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 781

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 782 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 832

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 833 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 875


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 191/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET +   L           A I   ++A                         A+
Sbjct: 351 FAFDLETDALDTL----------SANIVGISFAVAPGEAAYLPVAHDYLDAPDQLDRAAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  ++R + K    I++   ++    + +           + 
Sbjct: 401 LAQLKPLLEDENAWKVGQNLKYDRGVLKNY-DIELAGIKF-DAMLESYILNSVVGKHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +    Y   D + 
Sbjct: 459 SLAARWLNHKTVTFQEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 503

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++ +  + +     
Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSILAQHSKELTARLA 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +   T  L++ LF   GI     +      T + +L+   +    
Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSADPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A+ G ++V AD + IE R++A ++
Sbjct: 680 ----------------------VRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA GEDI+  T ++ F   +DKVS EQR   K +   L Y            
Sbjct: 718 QDKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMS-----AFGL 772

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++            FE +     +    +         + L G    L        
Sbjct: 773 SRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASNGYVETLEGRRLWL-------- 824

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                       R ++  D 
Sbjct: 825 -PDIKSSNAIRRKAAERAAINAPMQGTAADII-------------------KRAMIAVDE 864

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             +    N                                M           + VHDE+V
Sbjct: 865 WLEQQNDNAVR-----------------------------MI----------MQVHDELV 885

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E            + +LM  +      +PL  E      +
Sbjct: 886 FEVKAEAVEEASQKIRALMEGSVQ--LDVPLLVEVGVGNNW 924


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 193/701 (27%), Gaps = 165/701 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
           + +D ET S   +           A +   ++A +++        EQ      +      
Sbjct: 357 ISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKFKA 406

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
              +   + V  N  ++  + +   GI +       T +        L  ++       L
Sbjct: 407 IYENPNTLKVGQNIKYDLEVLRNY-GIMLQG-PLFDTMIAHYLLQPELRHNMDFMAEVYL 464

Query: 117 NFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           N+         G K    +  +    S  Y                Y   D + T +L  
Sbjct: 465 NYETVHIDALIGAKGKTQKNMRELAPSEVYA---------------YACEDADITLQLKN 509

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P            + E  L  +   +   G RID   + +  ++  +   +L+++I 
Sbjct: 510 VLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIY 569

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      +   LF    I D    ++     T + +L            IL+
Sbjct: 570 QAA-GKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILD 628

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             A        ++ L + ++   G +  +      + TGR S      QN+P        
Sbjct: 629 YRALKKLLGTYVDALPKLINPRTGHIHTSFNQAV-TATGRLSSSDPNLQNIP-------- 679

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             G     +R C I   G +   AD + IE RV+A ++ +   +
Sbjct: 680 ----------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANML 723

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF  G DI+  T AK ++ P+ +V++++R   K     +                G+ +
Sbjct: 724 DAFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGII--------------YGITV 769

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              +  +                                     + +   +      V  
Sbjct: 770 FGLADRLNIERA------------------------------EAKQLIDGYFKMFPQVRD 799

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   E                                       RR    D+    + 
Sbjct: 800 YMEQAKETAKANGYVETFFH--------------------------RRRYLPDINSSNA- 832

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633
             T      R            +Q  + DI+   M               ++L VHDE+ 
Sbjct: 833 --TVRGIAERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELN 884

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                T    V  +    M         +PL A+G     +
Sbjct: 885 FSVLPTEKELVERIVMEEMQAAYP--LDVPLVADGGWGNNW 923


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 100 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 149

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   ++  T + +           + 
Sbjct: 150 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 207

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 208 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 252

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      IA   +
Sbjct: 253 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 312

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 313 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 371

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 372 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 428

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 429 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 466

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     ID+VS EQR   K +                  
Sbjct: 467 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 512

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 513 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 542

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 543 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 576

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 577 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 627

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 628 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 673


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/709 (15%), Positives = 212/709 (29%), Gaps = 158/709 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
            + +D ET S   +             +   + A                          
Sbjct: 386 HVAVDTETTSLDAMAC----------DLVGVSLATGPGRACYIPLAHLKDGSSDDGDMFS 435

Query: 52  -----------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
                         + L   L   +V+ +A N  ++ ++  +     I    +  T +L+
Sbjct: 436 EGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY---GIEVGPFDDTMLLS 492

Query: 101 RTNGLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HV 153
                      +       L+ +    K   G  K+++         +  Y    A+  +
Sbjct: 493 YVLDAGRGKHGMDALSLAHLDHTPIPFKEVAGSGKSMVTFDKVSIEKASAYAAEDADVTL 552

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           + W L       +   T  +++RL      ER L  +   +  RG  ID  ++ +L   +
Sbjct: 553 RLWTLLKARLVAEKMVT--VYERL------ERPLVPVLCRMEARGVEIDRQILSRLSGEL 604

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSN 269
           AQ+   ++ DI ++    I +      L   LF    +     ++     T    L    
Sbjct: 605 AQKAAGIEADIHEMAGEPI-NIASPKQLGELLFGKMELPGGKKTKTGQWATGAQALEDLA 663

Query: 270 IT-QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                    I++    +       + L   ++   GR+  +     ++ TGR+S      
Sbjct: 664 AEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAMA-STTTGRFSSSEPNL 722

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                            A   +R+  IA++G KLV AD + IE R
Sbjct: 723 QNIP------------------------VRTEAGRKIRTAFIAADGHKLVSADYSQIELR 758

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA +A      +AFA+G DI+  T ++ FN P++ +    R   K +   + Y      
Sbjct: 759 VLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYG----- 813

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                    L + +   +      FE +     +    +    E    + + G       
Sbjct: 814 ISAFGLANNLGIDRGEASDYIKMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAH--- 870

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                 +  +      +               +                          R
Sbjct: 871 ------YPEIKSSNPQMRAFNERAAINAPIQGSAADII---------------------R 903

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
              + ++G                            A++ + L   M          +L 
Sbjct: 904 RAMARMEG----------------------------ALAAEKLSAQM----------LLQ 925

Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKRY 673
           VHDE++ E PD     ++ T+  +M   P  A  L  PL+ +   A+ +
Sbjct: 926 VHDELIFEVPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDARAAENW 974


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/707 (14%), Positives = 200/707 (28%), Gaps = 171/707 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
            +  ID ET S         +  A    +   + A+D +       T             
Sbjct: 346 KRFAIDTETTSLD-------YRVA---EMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNRE 395

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            + + L   L DETV  + H+  ++  +F     +++    +  T + +           
Sbjct: 396 QILAQLKPILEDETVHKIGHHLKYDAHIFANHS-VELKGW-YFDTMLASYVINSVATRHG 453

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L+      +   GK                   +  +    ++   Y   D 
Sbjct: 454 MDDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDA 498

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
             T  L++ L                 E  +  +   + + G ++D   + +L     + 
Sbjct: 499 HVTYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTET 558

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L+   ++L  G   +      +   LF   G+     +      T +SIL       
Sbjct: 559 ILGLENQAIELA-GESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESILEKVEHP- 616

Query: 273 LAKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              ++IL     S       + L E   +   R+  +      + TGR S      QN+P
Sbjct: 617 -IAEVILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQA-LTATGRLSSSDPNLQNIP 674

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                     G     +R   IA  G+ L+ AD + IE R++A 
Sbjct: 675 ------------------------IRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAH 710

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            + ++  + AF +G+D++  T A+  N P+++V+ +QR   K +                
Sbjct: 711 FSQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNF-------------- 756

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                     +        +   K + 
Sbjct: 757 GLLYGMSEF------------------------------GLIRQLGFTREESQNYIKQYF 786

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            ++ G+ +  +   +                                 +     RRL   
Sbjct: 787 HRYPGIYEYMQRTRQVALEQG--------------------------FVETILGRRLYTP 820

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627
           D+      +        R             Q  + DI+   M    K        ++L 
Sbjct: 821 DIDARNMMVR---KGAERAAINAPL------QGSAADIIKLAMIEVDKMLPKDQAKLLLQ 871

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E        +   L   M    +    +PL  E  +   +
Sbjct: 872 VHDELVFEVDADLADELAPKLAETMQSVVN--ISVPLLVEVGQGLNW 916


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 197/700 (28%), Gaps = 137/700 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDL 57
            ID ET S   +           A +   + A             Q       +   + L
Sbjct: 284 AIDTETDSLDYMR----------ANLVGISVAPAPGEAYYLPLAHQLSANLPYAETLTRL 333

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL 114
              L          +  ++R +F +  GI++   +   T +++ T        +L +   
Sbjct: 334 KPLLEASAPPKSGQHHKYDRHIFARA-GIELRGIK-DDTMLMSYTIDSTATRHNLDDLAD 391

Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             LN      +   GK                           +    Y   D + T  L
Sbjct: 392 YYLNHQTTTFEDIAGKGAKQL---------------TFDQIPLETATAYACEDADITLRL 436

Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              L P             + E  L  L   I   G RID   +      I+ +   L+ 
Sbjct: 437 KNHLAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEH 496

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSN--ITQLAKD 276
               L      +      L+  L+   G+            T + +L+            
Sbjct: 497 AAHTLAGSPF-NLGSPKQLQEILYDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPR 555

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           LIL     +       + L E ++   GR+  +      + TGR S      QN+P    
Sbjct: 556 LILEHRGLAKLKTTYTDRLPELINPHTGRIHTSYHQAV-TSTGRLSSSDPNLQNIP---- 610

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 611 --------------------VRSEAGRRIRRAFIAEDGWQILAADYSQIELRIMAHLSAD 650

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AFA G+DI+  T A+ F    + VS+EQR   K +   L Y              
Sbjct: 651 PGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMS-----AFGLAR 705

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L++ +        + F  + +   +    ++   +    + L+G    L          
Sbjct: 706 QLNIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYL---------P 756

Query: 516 GVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            +        +      +      SA  +     L + R      +             +
Sbjct: 757 DINSKNPQRRQASERLAINAPMQGSAADIIKRAMLAIDRELELSPLPGAGGTHNTNPLPR 816

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
              +  N                         RD               +++ VHDE+V 
Sbjct: 817 EATAAKN-------------------------RD------------DLRLIMQVHDELVF 839

Query: 635 ET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  P         + +LM    +    +PL  E      +
Sbjct: 840 EIRPQAAAELTPRIVALMENAMT--LSVPLIVETGLGANW 877


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           +   +   L +E V  + H+  ++  +F    GI++    +  + + +           +
Sbjct: 400 ILVQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L+     +L P  + E         +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++ D    +      +   LF   GI     +      T +S+L        
Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   + ++M         +PL  E  + + +
Sbjct: 877 DELVFEADQNIAEELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/708 (14%), Positives = 184/708 (25%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           +   D ET S  PL          QA +   + A +                        
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTH 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  V  +  ++  + ++  G+++       T + +           +
Sbjct: 406 ALAQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         +      Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AFA+G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M               ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 884 QVHDELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 201/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S + +           A I   ++A                          +
Sbjct: 292 FAFDTETTSLRYM----------DAEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQV 341

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L +  +  V  N  +++ +     GI +       T + +           + 
Sbjct: 342 LDQLKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIA-EDTMLESYVLNSVATRHDMD 399

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +    Y   D + 
Sbjct: 400 SLAMYYLGEKTTSFESIAGKGAKQL---------------TFNQIDLEKAAPYAAEDADI 444

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P               +  L  +   +  RG  I    + +  + +A+   
Sbjct: 445 TLRLHQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMA 504

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAK 275
           +L+++  ++  G   +   T  L+   +   G+ ++   +   +   S     + T    
Sbjct: 505 ELEKEAHEVA-GETFNLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSPTNTNC 563

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            +IL   + S       +TL E +    GR+  +      + TGR S      QN+P   
Sbjct: 564 RVILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAV-TATGRLSSSEPNLQNIP--- 619

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G KLV AD + IE R++A ++G
Sbjct: 620 ---------------------IRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSG 658

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAF  GEDI+  T ++ F   +D VS +QR   K +                   
Sbjct: 659 DKGLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINF--------------GLI 704

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+     S+ +                                     +     +  ++
Sbjct: 705 YGMSAFGLSRQLDVE------------------------------RKLAQEYIDRYFERY 734

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL+   ++ +                              D  +     RRL   ++ 
Sbjct: 735 PGVLKYMDNIRKQA--------------------------HDDGFVETLFGRRLYLPEIN 768

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLT 627
                L  A     R            +Q  + DI+   M +          +   + + 
Sbjct: 769 ARNKQLQQAA---ERTAINAP------MQGTAADIIKRAMVDVENWLLKEHADEARMTMQ 819

Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E  ++    + + L   M+        +PL  E      +
Sbjct: 820 VHDELILEVKESALDKIRSGLEKRMSAAAE--LDVPLLVEAGVGDNW 864


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 87/703 (12%), Positives = 184/703 (26%), Gaps = 166/703 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
               D ET    PL           A +   ++A  +           S     +     
Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K   + +       T +            +       
Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K       +                   +   EY   D + T +L 
Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADVTLKLK 501

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P    E            L  +   +   G  +D   + +    +     KL++++
Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +   T  +   LF    +             T + +L            +L
Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L E ++   G++  +      + TGR S      QN+P       
Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  N       AD + IE R++A ++G+  
Sbjct: 673 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G DI+  T AK +  P+++V+ + R   K                      G+
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGI 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +  +  + +   + + +  +
Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +  ++  +                                       R+    D+    
Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLPDINSHN 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M         +PL A+  E + +
Sbjct: 877 LNFNVYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/693 (14%), Positives = 189/693 (27%), Gaps = 141/693 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S   +           A I   +++                          +
Sbjct: 352 VALDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L D     +  +  ++R +F     ID+       T + +    +  P  L +
Sbjct: 402 LARLKPWLEDARYPKLGQHVKYDRHVFANH-DIDVRGY-VHDTMLQSYVLEVHKPHGLAS 459

Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   +    +   GK    I         +  Y C  ++      L      +  +
Sbjct: 460 LAERHTGRTGISYEDLCGKGAHQIPFAQVPVDKAAAYSCEDSDQTLDVHLALWPLLQADD 519

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                  +L  + + E         I   G  ID   + +    + Q   +L+ +  ++ 
Sbjct: 520 -------KLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLETEAYEIA 572

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLAS 284
                +      L    F   G+ +V  +      T + +L            +L   + 
Sbjct: 573 GQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL 631

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +       + L++      GR+        A  TGR S      QN+P            
Sbjct: 632 TKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP------------ 678

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               VR   +A  G  +  AD + IE R++A I+G+   + AF 
Sbjct: 679 ------------IRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGDHALLHAFH 726

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D++  T A+ F   +D+V+ EQR   KV+   L Y        +      L ++  +
Sbjct: 727 AGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMS-----SFGLAKNLGIETKA 781

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F+ +   + +    + Q       + + G    L           +      
Sbjct: 782 AAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYL---------PEINSPNGP 832

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
              G                                       +L    V+ +       
Sbjct: 833 RRAGAERAAINAPMQGTAADLI---------------------KLAMVAVQKELDAHKPG 871

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                                         M           + VHDE+V E P+     
Sbjct: 872 IK----------------------------MI----------MQVHDELVFELPEGEVDW 893

Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   +  LM +    A  +PL AE      + K
Sbjct: 894 LRGHIPRLMAEVA--ALKVPLLAEVGVGANWDK 924


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 194/702 (27%), Gaps = 161/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A I   ++A +                        +
Sbjct: 332 FAFDTETTSLNYM----------DAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHV 381

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
            + L   L ++ +  V  N  ++  +      I +    +  T + +  +    S   + 
Sbjct: 382 LARLKPLLENDGLKKVGQNLKYDANVLANY-DIALKGIAY-DTMLESYVHNSTGSRHDMD 439

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +    +  G Y   D + 
Sbjct: 440 TLAELHLGHKTIHFEDIAGKGAKQL---------------TFNQIKLEEAGPYAAEDADI 484

Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P            +D E  L  +   I   G  +D  L+ +L         
Sbjct: 485 TLRLHQALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTKLLGELSLQHGASIV 544

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274
           KL+++  +L      +      L   LF    + +V  +      T + ++    +    
Sbjct: 545 KLEKEAYELAGEEF-NLGSPKQLATILFEKMNLPVVKKTAKGAPSTNEEVMQELALDYPL 603

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + S       + L   V+   GR+  +     A  TGR S      QN+P  
Sbjct: 604 PSVILQHRSLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 660

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G K+V AD + IE R++A ++
Sbjct: 661 ----------------------IKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLS 698

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +    KAFA G D++ +T A+ F T ++ VS EQR   K +   L Y            
Sbjct: 699 NDPGLQKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMS-----AFGL 753

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +        + FE +     +   ++    E    + L+G    L        
Sbjct: 754 ARQLRIGRNDAQTYIDTYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYL-------- 805

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              +        +      +      +A  +     + +    +   I            
Sbjct: 806 -PEINSSNGMRRQAAERVAINAPMQGTAADIIKRAMIDVDAWLQTEQID----------- 853

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                            +R I+                 VHDE+
Sbjct: 854 ---------------------------------ARIIM----------------QVHDEL 864

Query: 633 VSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E            LC +M+        +PL  E      +
Sbjct: 865 VLEVAAADAEAISAKLCDIMSSAV--VLSVPLLVEAGIGDNW 904


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/704 (14%), Positives = 194/704 (27%), Gaps = 168/704 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET     +           A +   +++ +                     +   
Sbjct: 356 VSLDTETTGLDGMT----------AQLVGISFSIEAHQAAYLPLAHHYPGAPDQLGREHA 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
              L  +L       +  N  +++ +F    GI         T + +       P  + N
Sbjct: 406 LQKLKHWLESPAHKKLGQNLKYDQHIFANH-GIAFAGIA-EDTLLQSYVLESHKPHEMGN 463

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S        GK                           +    Y   D + T
Sbjct: 464 LALRHLGLSTVSYADVVGKGAKQIG---------------FDQVDLETATRYAAEDADIT 508

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            +L + L P   G         E  +  +   +   G  ID  ++ +    +  +  +++
Sbjct: 509 LQLHQTLSPQLQGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIE 568

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           +   +       +      L   LF    +         +  T + +L    +      L
Sbjct: 569 KQAFEAAGQPF-NLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQELALDYPLPKL 627

Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L     +       + L + V+   GR+  +     A  TGR +      QN+P     
Sbjct: 628 LLEYRGMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVA-VTGRLASSDPNLQNIP----- 681

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   I   G ++V AD + IE R++A ++G++
Sbjct: 682 -------------------IRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDE 722

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             +KAFA GEDI+  T A+ F+  +D VS EQ                            
Sbjct: 723 GLLKAFAAGEDIHRATAAEVFSVALDAVSSEQ---------------------------- 754

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +  L         A +  +  +A +     + A++ G
Sbjct: 755 ----------------RRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYIDLYFARYPG 798

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +      E                                 +     RRL   ++ G 
Sbjct: 799 VKRYMDSTREQAKAQG--------------------------FVETWFGRRLWLPEINGA 832

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHD 630
                 A     R            +Q  + D++   M          K    +++ VHD
Sbjct: 833 NGMRRQAA---ERAAINAP------MQGTAADLIKLAMIAVQDWLETEKLATKLIMQVHD 883

Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E P      V   +  LM         +PL+    E   +
Sbjct: 884 ELVLEVPQGELARVKDKVRELMCNVAE--LKVPLEVGMGEGGNW 925


>gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 183/705 (25%), Gaps = 161/705 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +           A I   +++                          +
Sbjct: 346 VALDTETTSLDEMV----------AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEV 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L +     +  +  ++R +F    GI++       T + +    +  P  L +
Sbjct: 396 LAKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHGLAS 453

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                         +     EY   D + T
Sbjct: 454 LAERHLGRKGINYEDLCGKGAKQ---------------IPFSQVSIDKAAEYSCEDSDQT 498

Query: 171 RELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            ++ + L P  +               E         I   G  ID   + +    + Q 
Sbjct: 499 LDVHRTLWPRLEKDAQEGGKLRFIYELEIASSETLYRIERNGVLIDAPTLAQQSHELGQR 558

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
             +L+++  +L      +      +    F   G+ +V  +      T + +L       
Sbjct: 559 ILQLEQEAYELAGQPF-NLGSPKQIGEIFFGKLGLPIVKKTATGAPSTDEEVLEKLADDY 617

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                IL     S       + L++      GR+        A  TGR S      QN+P
Sbjct: 618 PLPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP 676

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           VR   IA  G  +  AD + IE R++A 
Sbjct: 677 ------------------------IRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAH 712

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G+   + AF +G D++  T ++ F  P   V+ EQR   K +   L Y        + 
Sbjct: 713 LSGDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMS-----SY 767

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L +   +        F+ +   + +    +         + + G    L      
Sbjct: 768 GLAKSLGIDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYL------ 821

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +         G                     L+         ++    R+    
Sbjct: 822 ---PEINSPNGPRRGGAERAAINAPMQGT-----AADLIKLSMNAVQRVLDAEGRK---- 869

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                                     M             VHDE
Sbjct: 870 --------------------------------------TKMIM------------QVHDE 879

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +V E P+     +   +  LM         +PL AE      + K
Sbjct: 880 LVFEVPENEVDWLKREVPKLMAGVAQ--LRVPLLAEVGVGVNWDK 922


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/693 (15%), Positives = 205/693 (29%), Gaps = 144/693 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDL 57
             +  D ET S  PL          +A +   A++W+          +       +   L
Sbjct: 368 KSVCFDTETTSLNPL----------EAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLIELL 417

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +     +  +  N  ++  +  K  GI +       T +           ++      
Sbjct: 418 RPFFESPEIEKIGQNLKYDIKVLDKY-GIKVEG-PTFDTMIAHYLINPDMRHNMDILAET 475

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN++        GK    +  K   D P  + T      A   F      + E      
Sbjct: 476 YLNYTPQPISELIGKK--GKNQKSMRDVPLAEQTEYAAEDADITFQLKEFFEKELDEAKT 533

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++L    + E  L  +   +   G  +DLD + KL E + ++ K+L+  I +      + 
Sbjct: 534 RKLFN--EIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELEAKIYEAAGEEFK- 590

Query: 235 SRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 L + LF    +      ++     T + +LS+          +L+         
Sbjct: 591 ISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQHVLDYRGLVKLQN 650

Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V    GR+        A  TGR S      QN+P                 
Sbjct: 651 TYVDALPGQVEKSSGRVHTDYVQTIA-ATGRLSSNNPNLQNIP----------------- 692

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          VR   I   +   L+ AD + IE R++A ++ E+  IKAF +GED
Sbjct: 693 -------IRTERGRQVRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETMIKAFKDGED 745

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+ +T ++ FN P+++V++EQR+  K +   + Y                          
Sbjct: 746 IHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTS--------- 791

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                         L  +  + +   +   +  +     D    
Sbjct: 792 ------------------------------LSRSESKELIDTYYKTYPKLSNYIADQVAY 821

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +                           RR    D+    + +  A  + 
Sbjct: 822 AREHGYVSTIL--------------------------GRRRYLKDINSQNAVVRGAAERN 855

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641
                         +Q  + DI+   M N  K          ++L VHDE+V +      
Sbjct: 856 ---------AVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPEL 906

Query: 642 FSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             V   + S M     +   +PL  +    + +
Sbjct: 907 DQVKKLIKSEMENA--YQLNVPLDVDLGVGQDW 937


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/695 (16%), Positives = 200/695 (28%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 339 SFDTETTSLDPMV----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +       P  + N 
Sbjct: 389 AKLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLQSYVLESHRPHDMDNL 446

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170
               L       +   GK                +    +     +L    Y +   E T
Sbjct: 447 ALRHLGIKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQTLYPQLAAEET 506

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E         D E     + + +   G  ID + + +    IA    +L+ +   L  G
Sbjct: 507 LE-----HVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEIATRLIQLESEAYVLAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           ++L     S 
Sbjct: 562 EF-NLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620

Query: 287 SAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+++ GR+        A  TGR +      QN+P              
Sbjct: 621 LKSTYTDKLPRMVNANTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA  G KLV AD + IE R++A I+G++  ++AF+ G
Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEG 715

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F+    +VS +QR + KV+                    G+     + N
Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLASN 761

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +                               +   A +L    + A++ GV +   +  
Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 792 LSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M    K       G  +++ VHDE++ E PD 
Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDE 876

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  LM      A  +PL AE      +
Sbjct: 877 ELSDVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/730 (15%), Positives = 207/730 (28%), Gaps = 194/730 (26%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEP--------VKLWDRTEQ---- 50
           +  D ET S  P+          QA +   + A  D+                T +    
Sbjct: 399 VAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGSG 448

Query: 51  -----------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
                            +     L   L DE V+ VA N  ++ +L K+     +  + +
Sbjct: 449 GDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRH---GVVMRSF 505

Query: 94  ICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDC 147
             T +++           +       L  +    K   G  K+ I         +     
Sbjct: 506 DDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVTGSGKSSITFDFVNIDKATA--- 562

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDR 197
                         Y   D + T  L+  L P              ER L  +   + +R
Sbjct: 563 --------------YAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVPVLAHMEER 608

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D  ++ +L   +AQ+    +E+I +L  G   +      L   LF   G+     +
Sbjct: 609 GITVDRQILSRLSGELAQKAASFEEEIYELA-GERFNIGSPKQLGDILFGRMGLPGGSKT 667

Query: 258 E----GTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           +     T   +L             I++    +       + L   +  + +   T    
Sbjct: 668 KTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPETKRVHTSYAL 727

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                                +R+  I++ 
Sbjct: 728 ASTTTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTP 763

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KL+ AD + IE RVLA +A       AF NG DI+  T ++ F  P++ +  E R   
Sbjct: 764 GHKLLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRA 823

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +                    G+                                   
Sbjct: 824 KAINF--------------GIIYGIS------------------------------AFGL 839

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A +  +  +      K +  +  G+    +                              
Sbjct: 840 ANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIF-------------- 885

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR  Y +++     +        R            +Q  + DI+  
Sbjct: 886 ------------GRRAHYPEIRSSNPSVKAF---NERAAINAP------IQGSAADIIRR 924

Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPL 663
            M          K    ++L VHDE++ E  +     ++  + S+M     P+ +  +PL
Sbjct: 925 AMIRIEPALEAEKLSARMLLQVHDELIFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPL 984

Query: 664 KAEGYEAKRY 673
           K +   A  +
Sbjct: 985 KVDARAADNW 994


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 184/708 (25%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           +   D ET S  PL          QA +   + A +                        
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTH 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  V  +  ++  + ++  G+++       T + +           +
Sbjct: 406 ALAQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         +      Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     S       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AFA+G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M               ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 884 QVHDELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 196/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +           A +   ++  ++                       +
Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L  +TV+ V  +  +++ +      I +    +  T + +           + 
Sbjct: 403 LDALKPILESDTVIKVGQHIKYDKNVLANY-DITLNGIGF-DTMLESYVLNSTAQRHDMD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  + +  G Y   D + 
Sbjct: 461 SLALAYLGHKTIHFEEIAGKGAKQL---------------TFNQISLEEAGPYAAEDADI 505

Query: 170 TREL----FKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L    + +L  + +        E  L  +   +   G  ID   + +  + +A    
Sbjct: 506 TLRLHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLRQQSQDLATRIA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+ ++ +       +   T  L+  LF    + +       +  T + +L    +    
Sbjct: 566 ELESEVHEEAGEPF-NLGSTKQLQHVLFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              I+     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 625 PKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   +   G K V AD + IE R++A ++
Sbjct: 682 ----------------------IRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AFA+G+DI+  T A+ F  P+D+V+ EQR   K +   L Y            
Sbjct: 720 GDKGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMS-----AFGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    ++   E    + + G    L        
Sbjct: 775 SKQLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                                       ++    V
Sbjct: 827 -PDIKASNGARRKGAERAAINAPMQGTAADII---------------------KMAMIKV 864

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                         +R+                 D+    M                E+V
Sbjct: 865 DD-----------WIRKNASD-------------DVTM--MMQVHD-----------ELV 887

Query: 634 SETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +    + V T+ +LM    +    +PL  E    + +
Sbjct: 888 FEIREDKVETYVSTITALMESAAT--LNVPLVVEAGVGENW 926


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 87/703 (12%), Positives = 184/703 (26%), Gaps = 166/703 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
               D ET    PL           A +   ++A  +           S     +     
Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K   + +       T +            +       
Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K       +                   +   EY   D + T +L 
Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADITLKLK 501

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P    E            L  +   +   G  +D   + +    +     KL++++
Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQEV 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +   T  +   LF    +             T + +L            +L
Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L E ++   G++  +      + TGR S      QN+P       
Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  N       AD + IE R++A ++G+  
Sbjct: 673 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G DI+  T AK +  P+++V+ + R   K                      G+
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGI 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +  +  + +   + + +  +
Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +  ++  +                                       R+    D+    
Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLPDINSHN 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M         +PL A+  E + +
Sbjct: 877 LNFNVYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 200/705 (28%), Gaps = 169/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
              ID ET S         +  A    +   + A+D +                   +  
Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +     GI++    +  + + +           +
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHISANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502

Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L       P  +      E  +  +   + + G R+D   + KL    A+  
Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+   +++  G   +      +   LF   GI     +      T +S+L        
Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++IL     +       + L E   +D     T      + TGR S      QN+P  
Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+ L+ AD + IE R++A  +
Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +D  + AF +G+D++  T A+     I+ V+ +QR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                     +        +   K +  +
Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + G+ +  +   +  +                              +     RRL   D+
Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
                 +        R             Q  + DI+   M        K+   ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E        +   +  +M         +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/692 (16%), Positives = 204/692 (29%), Gaps = 139/692 (20%)

Query: 1   MSKL---FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAM 53
           M  L     D ET S  PL          +A +   +++W+          E       +
Sbjct: 366 MKTLDSFAFDTETTSLDPL----------EAKLVGISFSWEKGKGYYLPFPEDFDDAKNI 415

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
             +  +   +  +  + HN  ++  +  K  GI I  + +  T +           +L  
Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY-GIRIDGENF-DTMIAHYLLNPDMRHNLDV 473

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +   GK    +  K   +    + T      +   F      + E  
Sbjct: 474 LSETYLGYKPVSIETLIGKK--GKNQKNFREVDLIEQTEYGTEDSDVTFQLKNIFEPELE 531

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +    +L      E  L  +  T+   G R+D+D + +L +   ++ K+L++ I      
Sbjct: 532 KVSLTKLFRNI--EMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQKIFSEAGE 589

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNRLASS 285
              +      L   LF    ++            T + ILS           IL+     
Sbjct: 590 EF-NLNSPKQLGDILFDKLKLEPKSKKTKTGQYSTGEEILSKLAH-YPIIKNILHYRQLQ 647

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 ++ L E V+    R+  T     A  TGR S      QN+P             
Sbjct: 648 KLKSTYIDALPELVNPVTQRVHTTFAQTVA-ATGRLSSVNPNLQNIP------------- 693

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   IA     K++ AD + IE R++A +A +   +KAF 
Sbjct: 694 -----------IRTEEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQDPVMVKAFQ 742

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +GEDI+ +T AK F   +D+V++EQR+  K +   + Y                 L    
Sbjct: 743 DGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVS-----AFGLAQQTGLSNTE 797

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                 + +E +   + +         E    + L+           R   + +      
Sbjct: 798 AKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRR---------RRYLKDINSRNNT 848

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                                     + +N  
Sbjct: 849 VRSHAER-----------------------------------------------NAVNAP 861

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-DIVLTVHDEIVSETPDTPYF 642
                       KL    +Q           K   K     ++L VHDE+V + P +   
Sbjct: 862 IQG---SAADIVKLAMIQIQ-----------KELDKKFATKMLLQVHDELVFDAPISEVE 907

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   + + M         +PL AE      +
Sbjct: 908 EVSKMIKTTMESVIQ--MEVPLVAEVGVGDNW 937


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     ++ 
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTQ 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L+  L D  V  +  +  ++  + ++  G+++       T + +           +
Sbjct: 406 ALAQLVPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-HDTLLESFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             + E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M +             ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDGWIAGHAQRAKMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 884 QVHDELVFEADTDFVDTLLSEVTTRMASAAE--LRVPLVVDSGIGDNW 929


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/691 (13%), Positives = 195/691 (28%), Gaps = 143/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+           A +   +++  +          E+  +     +  
Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++         G     +  K   D PP D  R     A          + E   +  +
Sbjct: 488 LHYQTIHIDELIGAR--GKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 545

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E  L  +   I   G  +D + + +  +      ++++++I ++  G   + 
Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNI 602

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 603 SSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKKLLST 662

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 663 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 703

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I   G +   AD + IE R++A ++ +   I AF +G DI+
Sbjct: 704 ------IRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 757

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I+ V+ + R   K                      G+ +   ++     
Sbjct: 758 AATAAKIYKIDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 799

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V +      +   
Sbjct: 800 --------------------------MGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAR 833

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+      +     +   
Sbjct: 834 ENGYVETIFH--------------------------RKRFLPDINSRNGVVRGYAERN-- 865

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M +  +          ++L VHDE+    P+     
Sbjct: 866 -------AINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 918

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M +   +   +PLKA+      +
Sbjct: 919 VQKIVIEEMEQA--YHMHVPLKADCGWGNNW 947


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/714 (14%), Positives = 202/714 (28%), Gaps = 171/714 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L +D ET S   +          QA +   + +                           
Sbjct: 360 LAVDTETTSLDEM----------QAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTALA 409

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L DE+++ +  N  ++  +F +     I    +  T +++    
Sbjct: 410 PGQMPMDEALAILKPVLEDESLLKIGQNMKYDWKIFARH---GIRVAPFDDTMLMSYAMF 466

Query: 105 LP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157
                  +       L       K     GKA I         +  Y    A    + W 
Sbjct: 467 SGLHGHGMDALSEEYLRHRPIPIKELIGTGKAQITFDKVPLDKATAYAAEDAEITYRLWA 526

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            F     R    T  +++ L      ER L  +   +   G ++D  ++ ++  + AQ  
Sbjct: 527 AFKPQLHRAQVTT--VYETL------ERPLVPVLAEMEMAGVKVDPTVLARMSNVFAQRM 578

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH---SNI 270
             L+E+I  L  G   +      L   LF   G+   +  +     T   +L        
Sbjct: 579 AGLEEEIQALA-GQSFNVGSPKQLGEILFDKLGVPGGEKGKTGAYATGADVLEDITTMED 637

Query: 271 TQLAKDL---ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQ 326
            + A DL   +L+    +       + L   V+ D GR+  +    GA+ TGR +     
Sbjct: 638 HKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAGAN-TGRLASTDPN 696

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +A+ G ++V  D + IE 
Sbjct: 697 LQNIP------------------------VRSDEGRRIREAFVATPGHRIVSLDYSQIEL 732

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA +A       AFA G DI+  T ++ F  P++ +    R   K +           
Sbjct: 733 RILAHVANLPEMKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINF--------- 783

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A   ++  +  +  
Sbjct: 784 -----GVIYGISGF------------------------------GLARNLRIPRSEAQGF 808

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +  G+     +                                    +     R
Sbjct: 809 IDRYFERFPGIRAYMDETVAFAKANG--------------------------FVQTLFGR 842

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++       + +          R            +Q  + DI+   M            
Sbjct: 843 KIHTP----EINAKGPGAGFAKRAAINAP------IQGAAADIIRRAMIRMPAAIAHLPA 892

Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E  ++    +  T  ++M     P+    +PL  +  +   +
Sbjct: 893 KMLLQVHDELIFEVAESAVDPLIATARAVMEGAADPAVRLSVPLVVDAGQGASW 946


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D ET     +          QA +   ++A                         
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
            +  +L   L D     +  N  ++  +  K  G+ I +K +  T + +           
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L       +   GK +                  + +         Y   D 
Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L  +L+PL + E             L  +   +  RG  +D  ++      +   
Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
              L++   KL      +      L+  L+    + +   +      T +++L    +  
Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +IL   + +       + L   V    R   T      + TGR S      QN+P 
Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G ++V AD + +E R++A I
Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   IKAF    DI+  T A+ F   +++V+ EQR   K +                 
Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                     +  +     +     +  
Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +  + +                                   +     RR+   D
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626
           +         A  +               +Q  + DI+   M   +           +++
Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E  +     V   +   M +    A  +PL  +      +
Sbjct: 853 QVHDELVFEMAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 184/708 (25%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           +   D ET S  PL          QA +   + A +                        
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTH 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  V  +  ++  + ++  G+++       T + +           +
Sbjct: 406 ALAQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         +      Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     S       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AFA+G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M               ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 884 QVHDELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 96/708 (13%), Positives = 176/708 (24%), Gaps = 158/708 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
           ++  D ET    PL           A +   + A                          
Sbjct: 335 QVAFDTETTGLDPLR----------AELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDP 384

Query: 51  ------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
                           + L   L D +V+ + HN  ++  +  +     +    +  T +
Sbjct: 385 SPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTML 441

Query: 99  LARTNG---LPSSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANH 152
           L+           +       L+            GK  I         +  Y    A+ 
Sbjct: 442 LSYVLDGASHGHGMDELAKLHLDHDTIKFADVCGTGKNQITFDRVPLDKALAYAAEDAD- 500

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                    +         E    +      ER L  +   +   G ++D   ++ L   
Sbjct: 501 ----ITLRLHGALKARLLAERMVTVYETL--ERPLVPVIVAMEAAGIKVDRTALMALSAE 554

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS 268
                 +L+  I  L      +      L   LF    +     ++     T    L   
Sbjct: 555 FGGRMAELEVQIQNLAGREF-NVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADALEEL 613

Query: 269 NIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                     +L+    S       + L   ++   GR+  +      + TGR S     
Sbjct: 614 AAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALA-LTTTGRLSSSDPN 672

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   IA  G  L+ AD + IE 
Sbjct: 673 LQNIP------------------------IRSEEGRKIRHAFIAEPGHVLLSADYSQIEL 708

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R++A +A     I+AF +G DI+  T A+ F  P++ +    R   K +   + Y     
Sbjct: 709 RLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYG---- 764

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L +          + F  + +        +++           G      
Sbjct: 765 -ISAFGLAQQLGISNGEAKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGRKVFT- 822

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                    G+      +          G             +          I LP+  
Sbjct: 823 --------PGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAM----------IRLPA-- 862

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                                                A++ + L             ++L
Sbjct: 863 -------------------------------------ALAAEGLK----------ARLLL 875

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E P     +   +   +M         +PL AE      +
Sbjct: 876 QVHDELVLEVPVAEQDATRAVVCRVMESAAQ--LDVPLVAEAGFGTSW 921


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/705 (15%), Positives = 194/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELSGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + ++ + +   G  ID   +      IA    +L
Sbjct: 496 QLHHALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVEL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EAQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+NGEDI+  T A+ F     +V+ +QR I KV+                    
Sbjct: 710 ASLLRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVIN--------------FGLIY 755

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A +L    + A++ 
Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q  +D                                          RRL   ++ G
Sbjct: 786 GVAQYMEDTRAIAKEKGYVETVF--------------------------GRRLWLPEING 819

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629
                  A     R            +Q  + D++   M               +++ VH
Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVH 870

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P+     V   L  +M         +PL AE      +
Sbjct: 871 DELVLEVPEAELPRVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 193/700 (27%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S  P+          QA +   +++ +                         
Sbjct: 335 VALDTETTSLDPM----------QAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAA 384

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L   L D ++  +  N  +++ +     GI +       T + +          + +
Sbjct: 385 LRQLRPMLEDASIPKLGQNLKYDKHVLANH-GIALNGIT-HDTLLQSYVLESHRTHGMDD 442

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                         + +   EY   D + T
Sbjct: 443 LAMRHLGVQTVTYEQIAGKGAKQ---------------VPFSQISIETAAEYAAEDADIT 487

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P  +            E  L  +  TI   G  ID  ++      I Q+   
Sbjct: 488 LQLHQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLID 547

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           L++    +      +      L+  LF   GI         +  T + +L    +     
Sbjct: 548 LEQQAYDIAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGAPSTDEDVLQELALDYPLP 606

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            ++L     +       + L   ++   GR+  +     A  TGR +      QN+P   
Sbjct: 607 KVLLEYRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVA-ITGRLASSDPNLQNIP--- 662

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  ++ AD + IE R++A ++ 
Sbjct: 663 ---------------------VRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQ 701

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  + AFA GEDI+  T A+ F  P D+VS EQR   KV+   L Y             
Sbjct: 702 DEGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMS-----AFGLA 756

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L++++ +        F  +     +    +    E    +   G    +         
Sbjct: 757 QNLNIERGAAQNYIDRYFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWV--------- 807

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +         G                     ++               R L   ++ 
Sbjct: 808 PEINSPNGMRRAGAERAAINAPMQGTAADLIKLAMIAVD------------RWLREHNLN 855

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                     I+Q                        VHDE+V 
Sbjct: 856 SKI-----------------------IMQ------------------------VHDELVL 868

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E PD     V   L  LM         +PL AE    K +
Sbjct: 869 EVPDAELELVQQTLPQLMQGVAK--LDVPLLAEVGVGKNW 906


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/589 (29%), Positives = 261/589 (44%), Gaps = 74/589 (12%)

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYC 163
           SL     AL+      K   GK LI +FC  +    ++        ++   +W  F +Y 
Sbjct: 2   SLDAVGAALDLDVQ--KDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYN 59

Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +RDVE    +  RL   P+ + E D + LDQ IND G  +D  L      L  Q R    
Sbjct: 60  QRDVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATL 119

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
               +LT     +      L+ +L    G ++  +++  +++ L  +      K+++  R
Sbjct: 120 ARARELTGLE--NPNSPIQLKEWLT-THGCEMSSLAKADVEAALESATGK--VKEVLELR 174

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              + S++ K   +     +DGR RG +QFYGA RTGR++G + Q QNLPR    +    
Sbjct: 175 GDLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQA 234

Query: 342 QTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           +T+      +             S  +R+  I S G + +VAD + IEARV+AW+AGE  
Sbjct: 235 RTLTRQRNLDALELLYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETS 294

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            + AF +G+D+Y  T ++ F  P++K   + E R  GK+  LA GY G     K M    
Sbjct: 295 TLAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG--- 351

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                                A++  L     + +  AWRA + 
Sbjct: 352 -------------------------------------ALRMGLAEHELKPIVDAWRAANP 374

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +++LW D+ +           I+ R+   +  L        + I LPS RRL Y   + 
Sbjct: 375 NIVRLWADVEQAALDA------ITTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQL 428

Query: 576 DCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
             +            T   +  R  TYGGKL ENIVQA++RD+L   M    + G+ IV+
Sbjct: 429 GENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVM 488

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            VHDEIV + P+   F++   C LMT  P WA GLPL A+GYE   YRK
Sbjct: 489 HVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/705 (15%), Positives = 193/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +      I +       T + +          + + 
Sbjct: 393 ARLKPWLEAADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A      Y   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALDQAAAYAAEDADITL 495

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID  L+      IA    +L
Sbjct: 496 QLHHVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIEL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AFA+GEDI+  T A+ F     +V+ +QR I KV+                    
Sbjct: 710 ASLLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 755

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A +L    + A++ 
Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q  +D                                          RRL   ++ G
Sbjct: 786 GVAQYMEDTRAAAKDQGYVETVF--------------------------GRRLWLPEING 819

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                  A     R            +Q  + D++   M          +    +++ VH
Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVH 870

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  +M         +PL AE      +
Sbjct: 871 DELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 196/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 355 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  ++  +  +   I++       T + +           + 
Sbjct: 405 LAQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMD 462

Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +     +  S    +   GK              + PY    A+                
Sbjct: 463 SLALRFMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQD 522

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +    +++      D E  L  +   I   G  I+  L+    + IAQ   +L++    +
Sbjct: 523 DKLLSVYR------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDI 576

Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                 +      L+   F    +         +  T + +L    +      +IL    
Sbjct: 577 AGQEF-NLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYRG 635

Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L + ++   GR+  +      + TGR S      QN+P           
Sbjct: 636 LAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP----------- 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A +G K++  D + IE R++A ++G+   ++AF
Sbjct: 684 -------------IRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             G+DI+  T A+     ID+V+ EQR   K +                    G+     
Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS---- 772

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +     +     +  ++ GV+Q  +
Sbjct: 773 --------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYME 806

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D     A                              +     RRL       + +  N 
Sbjct: 807 DTRSTAAEQGY--------------------------VETLFGRRLHLP----EITSRNG 836

Query: 583 ATSQL-MRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY---DIVLTVHDEIVS 634
              +   R            +Q  + DI+ + M          G     +++ VHDE+V 
Sbjct: 837 MRRKAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVF 890

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  ++    +   +  LM      A  +PL AE      +
Sbjct: 891 EVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/707 (14%), Positives = 189/707 (26%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             +D ET S  P+           A +   ++A +                         
Sbjct: 351 FALDTETDSLDPMR----------ARLVGLSFAAEPGRAAYLPLGHDYPGAPAQLGYEQA 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D  V  +  +  ++  + ++  G+ +       T + +           + 
Sbjct: 401 LDLLRPLLADPAVRKIGQHGKYDLHVLRRH-GVAVAGYA-DDTLLESFVLDSGNARHDMD 458

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L ++    +   GK +                       A      Y   D + 
Sbjct: 459 SLALRHLGYTTVKYEDICGKGVRQ---------------IPFSQCALDDATRYAAEDADI 503

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L               D E  L  + + I   G  +D+D + +    +++   
Sbjct: 504 TLRLHRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRML 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +  E    L  G   +      L   LF    +            T +  L         
Sbjct: 564 EAQERATALA-GRSFNLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEALEAIADLHEL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L E V+   GR+  +    GA  TGR S      QN+P  
Sbjct: 623 PRIILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGA-ATGRLSSSDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G+KLV  D + IE R++A ++
Sbjct: 680 ----------------------IRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA+G DI+  T A+ F  P+++V+  +R   K +                  
Sbjct: 718 QDPGLLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     + ++
Sbjct: 764 MYGMG------------------------------AFGLARQLGIDRGQAQDYIALYFSR 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    +   E                                       RRL    +
Sbjct: 794 YPGVRDYMERTREQARERGYVETVF--------------------------GRRLHLEYI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
               +          R            +Q  + DI+   M               ++L 
Sbjct: 828 NARNAAQRAGA---ERAAINAP------MQGTAADIIKRAMIAVDAWIADHAQRARMLLQ 878

Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E  +      V  +  LM+        +PL  +      +
Sbjct: 879 VHDELVFEADEEFVPELVSRVPELMSAAGD--LSVPLVVDTGIGNNW 923


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/704 (16%), Positives = 204/704 (28%), Gaps = 157/704 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 352 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQIDLQD 401

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW----ICTSVLARTNG--LP 106
           +   L  +L +  +  +  N  +++ +F    GI +             + +      L 
Sbjct: 402 VLGRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGIALNGIAGDAMLASYIIESHLG 460

Query: 107 SSLKNACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             L       L       +   GK    I         +  Y    A+     +      
Sbjct: 461 HGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRA 519

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           + D +   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++
Sbjct: 520 QMDAK-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQE 572

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDL 277
                     +      L+  LF   GI        ++    T +++L           +
Sbjct: 573 AYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKI 631

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P     
Sbjct: 632 ILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----- 685

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR    A  G  +V AD + IE R++A ++G+ 
Sbjct: 686 -------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 726

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I AF NGED++  T A+ F    + VS EQR   K +                    G
Sbjct: 727 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIYG 772

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A    +   + +     + A++ G
Sbjct: 773 MGQY------------------------------GLAKSLGIDNISAKNFIDRYFARYPG 802

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +  +   E  A                              +     RRL   D+   
Sbjct: 803 VAEYMQRTKEQAAAQG--------------------------FVETLFGRRLYLPDIHNK 836

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHD 630
            +    A +   R            +Q  + D++   M +             +++ VHD
Sbjct: 837 NA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHD 887

Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E P+     V   L  +M K       +PL AE      +
Sbjct: 888 ELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 931


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/721 (16%), Positives = 205/721 (28%), Gaps = 185/721 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
            + +D ET +            A ++ +   + +                          
Sbjct: 391 YVAVDTETDALN----------AMESGLVGVSLSCTPGKACYIPLAHVDGEGDLLGGGAL 440

Query: 50  -QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            +  +P       L   L D  V+ +A N  ++ ++ K+  G+++    +  T +L+   
Sbjct: 441 LEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAP--FDDTMLLSYAL 497

Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                   +       LN +    K   G  K+ I+        +               
Sbjct: 498 DAGMGGNGMDELSQRWLNHTPIPFKEVCGSGKSQISFDKVPLDKATA------------- 544

Query: 158 LFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVL 207
               Y   D + T  L+K L P              ER +      +  RG  ID  ++ 
Sbjct: 545 ----YAAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQMLS 600

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKS 263
            L    AQ   +L+ +I  +  G I +      L   LF   G+     ++     T  S
Sbjct: 601 LLSGEFAQGAARLESEIHDVA-GEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSAS 659

Query: 264 ILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
           +L             I+     S       + L   ++   GR+  +     ++ TGR S
Sbjct: 660 VLDDLAAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLA-STSTGRLS 718

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA  GKKL+ AD 
Sbjct: 719 SSEPNIQNIP------------------------IRTSEGRKIRQAFIAEKGKKLISADY 754

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ +    R   K +      
Sbjct: 755 SQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINF---- 810

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A +  +   
Sbjct: 811 ----------GIIYGIS------------------------------AFGLANQLGIARG 830

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+    ++  +                                   
Sbjct: 831 EAGDYIKTYFERFPGIKDYMEETKKFVHANGYVETIF----------------------- 867

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619
               RR  Y DV      +            Y        +Q  + DI+   M    +  
Sbjct: 868 ---GRRAHYPDVNTKNPNMRQF---------YERAAINAPIQGSAADIIRRAMVRMDEVL 915

Query: 620 ----NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKR 672
                   ++L VHDE++ E P+        L  + M K   P+    +PLK E   A  
Sbjct: 916 ETANLDAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEPALQLSVPLKVEAEAADN 975

Query: 673 Y 673
           +
Sbjct: 976 W 976


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/691 (13%), Positives = 195/691 (28%), Gaps = 143/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+           A +   +++  +          E+  +     +  
Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++         G     +  K   D  P D  R     A          + E   +  +
Sbjct: 488 LHYQTIHIDKLIGAR--GKNQKNMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 545

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E  L  +   I   G  +D + + +  +      ++++++I ++  G   + 
Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNI 602

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 603 SSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKKLLST 662

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 663 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 703

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I   G +   AD + IE R++A ++ +   I+AF +G DI+
Sbjct: 704 ------IRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDIH 757

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I+ V+ + R   K                      G+ +   ++     
Sbjct: 758 AATAAKIYKIDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 799

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V +      +   
Sbjct: 800 --------------------------MGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAR 833

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+      +        R
Sbjct: 834 EQGYVETIFH--------------------------RKRFLPDINSRNGVVRGYA---ER 864

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M +  +          ++L VHDE+    P+     
Sbjct: 865 NAINAP------IQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 918

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M +   +   +PLKA+      +
Sbjct: 919 VQKIVIEEMEQA--YRMQVPLKADCGWGNNW 947


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 189/700 (27%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET                 A +   ++A             +           A 
Sbjct: 332 VCLDTETTGLD----------VMDARLVGMSFAITPHEAAYLPLAHRYPGVPDQLDLDAT 381

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
            + L  +L  E    +  N  +++ +F    GI +       T + +          + +
Sbjct: 382 LARLRPWLESEQHKKLGQNLKYDKHIFANH-GIALRGIS-DDTLLESYVLESHKSHDMDS 439

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   G+                            +   Y   D + T
Sbjct: 440 LALRHLGVKTISYEEVAGRGAKQ---------------ICFDQVDLDIATRYAAEDADIT 484

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L + L P             D E     +   +   G  +D +L+      +  +   
Sbjct: 485 LQLHQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHELGVKLIA 544

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAK 275
           L+    +  +    +      ++  LF    + +   +      T + +L    +     
Sbjct: 545 LEARAHEAAEQPF-NLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELALDYPLP 603

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            ++L     +       + L + V+   GR+  +     A  TGR +      QN+P   
Sbjct: 604 KILLEYRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVA-VTGRLASSDPNLQNIP--- 659

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G  +V AD + IE R++A ++G
Sbjct: 660 ---------------------IRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSG 698

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++AFA  ED++  T A+ F T    V+ EQR   KV+   L Y             
Sbjct: 699 DAGLLQAFAKNEDVHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIYGMS-----AFGLA 753

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L +++ +        F  +     +    ++Q  +    + + G    L         
Sbjct: 754 KQLGIERGAAQAYIARYFARYPGVRDYMDSTREQAKQQGYVETVFGRRLWL--------- 804

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +G                                               
Sbjct: 805 PEINSSNAMKRQGAERAAINAPMQGT---------------------------------- 830

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                KL    VQ               K    +++ VHDE+V 
Sbjct: 831 ----------------AADLIKLAMIQVQG---------WLETEKLKTRLIMQVHDELVL 865

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E PD     +   L  LM    +    +PL  E    K +
Sbjct: 866 EVPDDELSLIKASLPGLMCHVAN--LNVPLLVEVGSGKNW 903


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 115/694 (16%), Positives = 206/694 (29%), Gaps = 137/694 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAMPSD-----L 57
           D ET S +P          +   +      W ++P  V            +P +     L
Sbjct: 381 DTETTSLEP----------KDTTLVGIGCCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
              L  E    V  N+ F+RI+     GI +       T + +      L   L + C  
Sbjct: 431 SVILESENYPKVFQNTKFDRIVLLN-KGIKLAGV-VFDTMLASYVLRPELSHKLSDLCER 488

Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172
              N      +  E         +               + A+  F    K   E  +  
Sbjct: 489 YLENIKALNYRDLEIPK-----TQTIAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQAP 543

Query: 173 -LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L++ L      E+ L  +   + + G  ID   + +L + + Q+ + L+    +   G 
Sbjct: 544 DLYELL---LKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYEAA-GE 599

Query: 232 IRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF   G++            T  + L          D IL     + 
Sbjct: 600 SFNLGSPKQLSEILFEKLGLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEHRTLAK 659

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   V    GR+         + TGR S      QN+P              
Sbjct: 660 LKSTYVDALPALVHPQTGRVHTDFNQAV-TTTGRLSSSNPNLQNIP-------------- 704

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I  +   LV AD + IE R+LA ++ E   ++A+ N 
Sbjct: 705 ----------IRTEFSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPVLLEAYQNY 754

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D++  T    F+   + ++ E+R+IGK +   + Y  GA   +  A   GL  Q+    
Sbjct: 755 QDVHRVTAQLLFDK--EVITSEERSIGKTINFGVIYGMGA---QRFARSMGLSFQEGKD- 808

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                  + + +   +   ++ +         + G                         
Sbjct: 809 -FIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGRRRY--------------------- 846

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                           +    P        ++  D   LN + +
Sbjct: 847 ----------------------FEFFDDKLNHLRGEKP-------ENLDLDKLNLNYSDA 877

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           QL+R            +Q  S DI+   M    +        ++L VHDE+V E P   +
Sbjct: 878 QLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELVFEIPPDEW 931

Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             +   +   M         +PL  +    K + 
Sbjct: 932 EDLQVKIKDTMENAVK--LTVPLVVDIRSGKNWM 963


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 193/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLL 58
             ID+ET S  P           +A +   A +             +       +P  L+
Sbjct: 316 FAIDLETTSLNP----------REARVVGYAASCRPHEAWYIPVGHRYLGAPEQLPESLV 365

Query: 59  -----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
                  L+D     +  N  ++  +  +  G ++    W  T + A           L 
Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVL-RIAGFELEGI-WCDTMLAAYLVNPARNSQGLD 423

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L+                             C            G Y   D +A
Sbjct: 424 ALALEYLDHRMISYAEVARSG---------------KCELNFSEVDLDRAGPYSCEDADA 468

Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L+P            D E  L  +   +   G ++D+DL+ +L     ++  +
Sbjct: 469 TYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIE 528

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274
           L+  I +   G   +      L   LF   G+ +   ++      T    L         
Sbjct: 529 LEAQIHEHCGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEV 587

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L   + S       + L + V+   GR+  +      + TGR S      QN+P  
Sbjct: 588 ARLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIP-- 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                   G     +R   IA  G  ++ AD + IE RVLA ++
Sbjct: 645 ----------------------IRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+    +AFA GEDI+  T ++ F    + V+ E R                        
Sbjct: 683 GDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQA--------------------- 721

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  +  +         A +  +     +    ++  +
Sbjct: 722 -----------------------KVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H G                                           +     RRL   ++
Sbjct: 759 HSGARSFLDSCIREAEVCG--------------------------FVTTIMGRRLCIPEI 792

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                 +     +               +Q  + DI+   M    +          +++ 
Sbjct: 793 ASKNGNVRAFAQRN---------AVNYPIQGSAADIIKAAMLRVNRRMQEERVASRLIMQ 843

Query: 628 VHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+     +  L    M         +PLK +      +
Sbjct: 844 VHDELIFEVPEGERDLMEELVRTEMEAALP--LSVPLKVDLNFGLNW 888


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/712 (14%), Positives = 204/712 (28%), Gaps = 163/712 (22%)

Query: 7    DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTE--QSAM-----PSDL 57
            D ET + +P            A +      W                   +        L
Sbjct: 414  DTETTALEP----------RDAELVGIGCCWGTGEADLAYIPTGHKTGQNLDKAIVLEAL 463

Query: 58   LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
               L D        N+ F+R++  +  GI +       T + +         +L   C  
Sbjct: 464  RPILEDNNYPKALQNAKFDRLIL-RCQGIKLAGV-VFDTMLASYVIDPEGSHNLTALCKE 521

Query: 116  L----NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                   +    K    K                         A  +   YC  DV  T 
Sbjct: 522  YLEDPKLTAKSYKDLVSKEQ------------------TIADLAIPIVANYCGMDVYTTF 563

Query: 172  ELFKRLIPLSDG------------------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            +L  +L    +                   E+ L  +   +  +G RI+ + + +L + +
Sbjct: 564  QLVSKLREKLEELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQEL 623

Query: 214  AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHS 268
              + + +++   ++      S      L   LF    +D+           T  ++L   
Sbjct: 624  ENKLQLIEQTAYEVAGEEF-SLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKL 682

Query: 269  NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                     IL     S      ++ L + V  D GR+        A+ TGR S      
Sbjct: 683  QDDHEVVKTILEHRTLSKLKSTYVDALPQLVRPDTGRVHTDFNQA-ATGTGRLSSSNPNL 741

Query: 328  QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
            QN+P                             S  +R   +   G  +V AD + IE R
Sbjct: 742  QNIP------------------------IRTEFSRQIRKAFLPKEGWLMVSADYSQIELR 777

Query: 388  VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
            +LA +  E   ++A+   +D++  T    F    + V+ ++R +GK +   + Y  GA+ 
Sbjct: 778  ILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINFGVIYGMGAQR 835

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
            F    +     +      +      + + +   +   ++           ++G       
Sbjct: 836  F----ARSVEGVSPTQAKLFIERFNQRYSRVFEYLNRVKKDAIAQGYVSTILGRRRYFKF 891

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                                      EG S+   + ++V  + +   K            
Sbjct: 892  --------------------------EGESVRKLKDSDVQDINLATLKN----------- 914

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYD 623
                        +    +QL+R            +Q  S DI+   M             
Sbjct: 915  ------------IGQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILKDRQAR 956

Query: 624  IVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            ++L VHDE+V E P   +  +   + + M         +PL  + +  + + 
Sbjct: 957  LLLQVHDELVLEVPPDEWEELQHKIKNTMENAVE--LSVPLVVDIHAGQNWM 1006


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 193/705 (27%), Gaps = 163/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------Q 50
           +  ID+ET S  P            A I   ++++ D                      +
Sbjct: 314 EFAIDLETTSLDP----------RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPR 363

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107
             +   L   L   +   +  N  F+  +   T G+ +   R+  T + +          
Sbjct: 364 DLVLERLRPQLESPSPTKIGQNIKFDMQVLA-TNGVSLSGIRF-DTMLASYVLNPSRQGH 421

Query: 108 SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L       L           G                    +       +    Y   D
Sbjct: 422 GLDALALEHLGHRMISYAEVTGSGKTQ---------------KNFSQVEIETASRYACED 466

Query: 167 VEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +AT  L ++  PL             E  L  +   + + G  +D+ L+  L    +  
Sbjct: 467 ADATWLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSR 526

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-----EGTLKSILSHSNIT 271
              L+  I +L  G   +      L   LF    +     +       T   +LS     
Sbjct: 527 MATLEGRIFQLA-GTTFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEE 585

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                LIL+    S       + L   V    GR+  +      + TGR S      QN+
Sbjct: 586 HEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTV-TSTGRLSSSDPNLQNI 644

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G  ++ AD + IE RVLA
Sbjct: 645 P------------------------IRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLA 680

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+    +AF + EDI+  T ++ F    + V+ E R   K +   + Y  G     +
Sbjct: 681 HLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQG-----S 735

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            +    L + + +     ++  E   +A         Q  E      ++G    +     
Sbjct: 736 FSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIA---- 791

Query: 511 RAKHQGVLQLWKDLTEGF-ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                 +     ++        +      SA  +                          
Sbjct: 792 -----DITSTNGNIRAFAQRNAINYPIQGSAADIIKS----------------------- 823

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                              R R+ G K                           +++ VH
Sbjct: 824 ------------AMIRVDGRIRSEGLK-------------------------SRLIMQVH 846

Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E  +    ++  L    M++       +PLK +      +
Sbjct: 847 DELVFEVREDELLAMELLVEEEMSRAVE--LRIPLKVDISHGVNW 889


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/727 (14%), Positives = 196/727 (26%), Gaps = 184/727 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +  P+           A +   ++A ++             +        
Sbjct: 364 KLVAVDTETNALDPML----------AELVGISFALENGEACYIPLAHVHQVAAQAENAQ 413

Query: 54  ---------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
                                       S L   L +  +  +  N  ++  +F    GI
Sbjct: 414 GDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYDLTIFANN-GI 472

Query: 87  DIPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           ++    +  T + +         ++ +     L       +   GK              
Sbjct: 473 NMQGVTF-DTMLESYVLNSTGRHNMDDLAERYLGHHTIAFEDIAGKGKNQL--------- 522

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQ 192
                        +   EY   D + T +L + L               + E  L  +  
Sbjct: 523 ------TFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPLVSVLS 576

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I   G  ID   +L   +  +Q+   L+    +L  G   +   T  L+  LF   G+ 
Sbjct: 577 RIERNGVLIDSRALLAQSKEFSQKLTALENKAHELA-GQHFNLASTKQLQEILFDKLGLP 635

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
                   +  T + +L           L++     S       + L + V+   GR+  
Sbjct: 636 VLKKTPKGAPSTNEEVLEELAYEHELPKLLVEHRGLSKLKSTYTDKLPQMVNRKTGRVHT 695

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                                +R  
Sbjct: 696 SYHQAV-TATGRLSSSDPNLQNIP------------------------VRNEEGRRIRQA 730

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA  G K++ AD + IE R++A ++ +     AF+ G+DI+ +T A+ F   ++ V+ E
Sbjct: 731 FIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAE 790

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   L Y        +      L + +          F+ +   ++    +++
Sbjct: 791 QRRSAKAINFGLIYGMS-----SFGLSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIRE 845

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G    L           +        +    V                
Sbjct: 846 KAKSQGYVETLFGRRLYL---------PDIQSANAMRRKAAERVAINAPMQGTAADII-- 894

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              +    D+    +                             
Sbjct: 895 -------------------KRAMIDIDKAITDDP-------------------------- 909

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAE 666
           DIL   M           + VHDE+V E  +         + SLM         +PL  +
Sbjct: 910 DIL---MI----------MQVHDELVFEVKEDKIEHYSALIKSLMENAAQ--LHVPLIVD 954

Query: 667 GYEAKRY 673
                 +
Sbjct: 955 VGVGDNW 961


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     ++ 
Sbjct: 357 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQ 406

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  G+++       T + +           +
Sbjct: 407 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 464

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 465 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 509

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 510 ITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 570 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 628

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 629 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 687 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 724 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------G 769

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 770 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 799

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 833

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M N             ++L
Sbjct: 834 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMIL 884

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 885 QVHDELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/691 (13%), Positives = 195/691 (28%), Gaps = 143/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+           A +   +++  +          E+  +     +  
Sbjct: 387 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 436

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 437 PLFENEKSMKVGQNIKYDMIILQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 494

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++         G     +  K   D PP D  R     A          + E   +  +
Sbjct: 495 LHYQTIHIDELIGAR--GKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 552

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E  L  +   I   G  +D + + +  +      ++++++I ++  G   + 
Sbjct: 553 HLF--YEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNI 609

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 610 SSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKKLLST 669

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 670 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 710

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I   G +   AD + IE R++A ++ +   I AF +G DI+
Sbjct: 711 ------IRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 764

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I+ V+ + R   K                      G+ +   ++     
Sbjct: 765 AATAAKIYKIDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 806

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V +      +   
Sbjct: 807 --------------------------MGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAR 840

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+      +        R
Sbjct: 841 ENGYVETIFH--------------------------RKRFLPDINSRNGVVRGYA---ER 871

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M +  +          ++L VHDE+    P+     
Sbjct: 872 NAINAP------IQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 925

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M +   +   +PLKA+      +
Sbjct: 926 VQKIVIEEMEQA--YRMYVPLKADCGWGNNW 954


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 192/702 (27%), Gaps = 161/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +          +A +   ++A                          +
Sbjct: 350 FAFDTETTSLNYM----------EAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQV 399

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L DE V  V  N  ++  +     GI +    +  T + +           + 
Sbjct: 400 LGKLKPLLEDENVKKVGQNLKYDASVLANH-GIALQGIAF-DTMLESYVVNSTANRHDMD 457

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L  +    +   GK                      +         Y   D + 
Sbjct: 458 TLALAHLGHTNISFEEIAGKGAKQL---------------TFNQIQLDQAAPYAAEDADI 502

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  +            E  L  +   +   G  ID  ++ +    +A + +
Sbjct: 503 TLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALIDATILGQQSAELAADLE 562

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           ++  +  +L      +      L + LF   GI ++  ++     T + +L    +    
Sbjct: 563 RIQREAWELAGEEF-NLASPKQLGVILFEKLGIPVIKKTKTGAPSTAEEVLQELALDYPL 621

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L +   +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 622 PALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQAV-TATGRLSSTDPNLQNIP-- 678

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                     A   VR   IA  G ++V AD + IE R++A ++
Sbjct: 679 ----------------------IKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLS 716

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++    AF  G D++  T A+ F T ++ V+ EQR   K +   L Y            
Sbjct: 717 GDEGLTNAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMS-----AFGL 771

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +        + F+ +     +   ++    E    + L+G    L        
Sbjct: 772 ARQLHIGRNDAQRYIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYL-------- 823

Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
              +        +      +      SA  +     + + +    + +            
Sbjct: 824 -PEINASNGMRRQAAERTAINAPMQGSAADIIKKAMIDVDKWLSTLKVDA---------- 872

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                                    M         +VL      
Sbjct: 873 --------------------------------------KMIM-QVHDE---LVL------ 884

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             E  +     V  TLC +M+        +PL  E      +
Sbjct: 885 --EVAEDQIEPVTATLCDIMSAALK--LDVPLLVEAGVGMNW 922


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     ++ 
Sbjct: 357 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQ 406

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  G+++       T + +           +
Sbjct: 407 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-EDTLLESFVLNSGSARHDM 464

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 465 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 509

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 510 ITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 570 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 628

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 629 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 687 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 724 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------G 769

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 770 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 799

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 833

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M N             ++L
Sbjct: 834 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMIL 884

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 885 QVHDELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/691 (15%), Positives = 200/691 (28%), Gaps = 144/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
           +  D ET    PL           A +   A++W+          E       +   L  
Sbjct: 377 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRP 426

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +  ++ +  +  N  ++  +  K   +++  K    T +           ++       L
Sbjct: 427 FFENDNIEKIGQNLKYDIKVLAKY-NVEVKGK-LFDTMLAHYLINPDMRHNMDVLAETYL 484

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++        GK    +      + P    T      A          + E      ++
Sbjct: 485 NYTPISITELIGKKGKNQLSM--REVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQK 542

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    D E  L  +   +   G  +D D +  L E +  +   L++ I +       +  
Sbjct: 543 LFN--DIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAAGEEF-NIA 599

Query: 237 QTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L + LF    + D    ++     T + +LS+          +L+    S      
Sbjct: 600 SPKQLGVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFRGLSKLKSTY 659

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   V    GR+        A  TGR S      QN+P                   
Sbjct: 660 VDALPLQVDESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------- 699

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        VR   +       L+ AD + IE R++A ++ E+  I+AF NGEDI+
Sbjct: 700 -----IRTERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDIH 754

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            +T +K FN PI +V++EQR+  K +   + Y                D           
Sbjct: 755 ASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD----------- 798

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       L  +  + + + + A +  +     +  +   
Sbjct: 799 ----------------------------LSRSEAKELIETYYATYPKLRAYMSEQVDFAR 830

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+    + +  A  +   
Sbjct: 831 DNGYVQTVL--------------------------GRRRYLKDINSRNAVVRGAAERN-- 862

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M N  K          ++L VHDE+V +        
Sbjct: 863 -------AVNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVYKPELEG 915

Query: 644 VGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           +  L    M         +PL  +      +
Sbjct: 916 LKNLIKTEMENAYE--LSVPLDVDLDIGANW 944


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/710 (16%), Positives = 194/710 (27%), Gaps = 155/710 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSA--------- 52
           + +D ET    P            A +      W      +                   
Sbjct: 400 VAVDTETTDLNPFK----------AQLVGIGVCWGAGLSDLAYIPVGHTDPALTQLPLEV 449

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           +   L  +L   +      N+ ++R++  +  G+ +     + T +           SL 
Sbjct: 450 VLEQLAPWLSSPSHPKALQNAKYDRLILLRH-GLVL-GGVVMDTLLADYLRDAAAKHSLD 507

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                    +  L     GKA   +                           YC  DV  
Sbjct: 508 GMAERDYGITPTLFSDLVGKAKDGKAS-------------CFAEVPSDQAALYCAMDVHL 554

Query: 170 TRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           TR L   L                  E  L  +   +   G RIDL  +  L + + +  
Sbjct: 555 TRRLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETL 614

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQ 272
            +L+ D  +       +      L   LF   G+D            T  ++L       
Sbjct: 615 TRLEADAKQAAGVDF-NLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDH 673

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L     S      ++ L + V +  GR+         + TGR S      QN+P
Sbjct: 674 PVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIP 732

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                        S  +R   +      L+ AD + IE R+L  
Sbjct: 733 ------------------------VRTEYSRRIRKAFLPQEHWTLLSADYSQIELRILTH 768

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++GE+   +A+ +G+D++  T         D VS ++R +GK +   + Y  GA+ F   
Sbjct: 769 LSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGMGAQRF--- 823

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                  + Q       +   E + +  +     +         + ++G           
Sbjct: 824 --ARETGVSQTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVETIMGRRRPFHFDR-- 879

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                                                L     K    I L  +RR    
Sbjct: 880 -----------------------------------NGLGRLLGKDPFEIDLDVARR---- 900

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
                        +Q +R            +Q  S DI+   M               ++
Sbjct: 901 ---------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQHSLPARLL 945

Query: 626 LTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           L VHDE+V E   +    V  L  S M K       +PL AE      + 
Sbjct: 946 LQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAETGVGSNWM 993


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/724 (16%), Positives = 208/724 (28%), Gaps = 179/724 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQ--- 50
            +  D ET S  P+          QA +   + A  D                   +   
Sbjct: 391 FVAFDTETTSLDPM----------QADLVGVSLALQDNAASPGAATIRAAYVPLGHKTGR 440

Query: 51  ------------SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
                       + +P D     L   L D +V+ VA N  ++ ++ K+  GI I    +
Sbjct: 441 DDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRH-GIVIRG--F 497

Query: 94  ICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDC 147
             T +L+           + +     L  +    K   G  K+L+         +     
Sbjct: 498 DDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAGSGKSLVTFDLVDIDKATA--- 554

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDR 197
                         Y   D + T  L+  L P              ER L  +   + +R
Sbjct: 555 --------------YAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEER 600

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  ID  ++ +L   +AQ+    +++I +L  G   +      L   LF    +     +
Sbjct: 601 GITIDRQILSRLSGELAQKAAAFEDEIYELA-GERFNVGSPKQLGDILFGRMNLPGGSKT 659

Query: 258 E----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           +     T   +L       +     I++    +       + L   V    +   T    
Sbjct: 660 KTGQWSTSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSM 719

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            A+ TGR S      QN+P                                +R+  I++ 
Sbjct: 720 AATTTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTP 755

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KL+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  P+D +  E R   
Sbjct: 756 GHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRA 815

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               L +++          FE +   + +    +    E 
Sbjct: 816 KAINFGIIYG-----ISAFGLANQLSIERAEAGEYIKKYFERFPGIKDYMESTKAFVREH 870

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
              + + G             +  +      +               +            
Sbjct: 871 GYVETIFGRRAH---------YPEIKSSNPSMRAFNERAAINAPIQGSAADVIR------ 915

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R +V  +     + L   T                            
Sbjct: 916 -------------RAMVQVEPALAKAGLGEKTR--------------------------- 935

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYE 669
            M           L VHDE++ E  D    +    + S M     P+ A  +PLK +   
Sbjct: 936 -ML----------LQVHDELIFEVEDEAIEAALPVIVSTMENAAMPAIAMRVPLKVDARA 984

Query: 670 AKRY 673
           A  +
Sbjct: 985 ADNW 988


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/710 (14%), Positives = 204/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET S   +           A +   +             T +            
Sbjct: 355 YVAVDTETTSLNEMR----------AELVGVSLCVTAGEACYIPLTHKSGAADDLFGDDA 404

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                       + L   L D++++ +  N  ++  +FK+ +GID+       T +++  
Sbjct: 405 LAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGIDVDP--IDDTMLMSYA 461

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+          D+  Y    A+  ++ 
Sbjct: 462 MNAGLHRHGMDVLSEQYLGHTPIPIKPLLGAGKSAKTFNRVPVEDAVRYAAEDADITLRL 521

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W++F     R       +++ +      ER L  +   +   G ++D D + ++    AQ
Sbjct: 522 WEVFKPQLHRKQVT--SVYETM------ERPLVPVLAKMEMHGIKVDRDTLSRMSNAFAQ 573

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT 271
           +   L++++ +L  G   +      +   LF   G++           T   +L      
Sbjct: 574 KMAGLEDELYELAGGKF-NVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLEDLATE 632

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L   ++   GR+  +    GA+ TGR S      QN+
Sbjct: 633 HDLPGRVLDWRQLSKLKSTYTDALQTHINAETGRVHTSYSITGAN-TGRLSSTDPNLQNI 691

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  GK LV  D + IE R+LA
Sbjct: 692 P------------------------IRTDEGRKIREAFIADEGKVLVALDYSQIELRILA 727

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +A  D   +AF +G DI+  T ++ FN P+D+++ + R   K +               
Sbjct: 728 HVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINF------------- 774

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 775 -GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 803

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     D                                    +     R++  
Sbjct: 804 FERFPGIRTYMDDTVAFAKE--------------------------HNRVETLFGRKIHT 837

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626
                + +          R            +Q  + D++   M             ++L
Sbjct: 838 P----EINAKGPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDDAIAHLPAKMLL 887

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE+V E        +      +M     P     +PL  +      +
Sbjct: 888 QVHDELVFEVDKDAAEDLIAAARDVMENAANPVVKFDVPLVVDAGIGATW 937


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 195/700 (27%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                        
Sbjct: 355 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWA 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  ++  +  +   I++       T + +           + 
Sbjct: 405 LAQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMD 462

Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +     +  S    +   GK              + PY    A+                
Sbjct: 463 SLALRFMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQD 522

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +    +++      D E  L  +   I   G  I+  L+    + IAQ   +L++    +
Sbjct: 523 DKLLSVYR------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDI 576

Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                 +      L+   F    +         +  T + +L    +      +IL    
Sbjct: 577 AGQEF-NLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYRG 635

Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L + ++   GR+  +      + TGR S      QN+P           
Sbjct: 636 LAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP----------- 683

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A +G K++  D + IE R++A ++G+   ++AF
Sbjct: 684 -------------IRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             G+DI+  T A+     ID+V+ EQR   K +                    G+     
Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS---- 772

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +     +     +  ++ GV+Q  +
Sbjct: 773 --------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYME 806

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D     A                              +     RRL       + +  N 
Sbjct: 807 DTRSTAAEQGY--------------------------VETLFGRRLHLP----EITSRNG 836

Query: 583 ATSQL-MRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY---DIVLTVHDEIVS 634
              +   R            +Q  + DI+ + M          G     +++ VHDE+V 
Sbjct: 837 MRRKAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVF 890

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  ++    +   +  LM      A  +PL AE      +
Sbjct: 891 EVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 190/716 (26%), Gaps = 182/716 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-------------- 51
            D ET    PL           A +   + A                             
Sbjct: 343 FDTETTGLDPLR----------ARLVGVSLAVAPGRACYIPVLHAPAQAQGDLLGGPSTD 392

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                      + L   L D +V+ V HN  ++  +        +  + +  T +L+   
Sbjct: 393 APQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ---GLAVEPFDDTMLLSYAL 449

Query: 104 G---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   L   CL  L  +        G                               
Sbjct: 450 DGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQ---------------VTFDRVPLDKA 494

Query: 160 GEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            +Y   D + T  L   L P              ER L  +   +   G ++D   ++ L
Sbjct: 495 RDYAAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMAL 554

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
            E   +   +L+ +++ L +G   +      L   LF    +     ++     T   +L
Sbjct: 555 SEDFGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVL 614

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                       +L+    S       + L   ++   GR+  +     A+ TGR S   
Sbjct: 615 EELAPLHALPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYSLA-ATTTGRLSSSD 673

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +A  GKKLV AD + I
Sbjct: 674 PNLQNIP------------------------IRTEEGRKIRHAFVAEPGKKLVSADYSQI 709

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A +A       AFA+G DI+  T ++ F  P+D +    R   K +         
Sbjct: 710 ELRLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDGIDPALRRRAKAIN-------- 761

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+                                   A +  +     +
Sbjct: 762 ------FGIIYGIS------------------------------AFGLAAQLGIPQGEAK 785

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
              +A+ A++  +    +   E                                 +    
Sbjct: 786 AYIEAYFARYPEIRAYMERTKEEARDQG--------------------------FVTTLF 819

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
            R++    +K     +        R    G       +Q  + DI+   M          
Sbjct: 820 GRKVFTPGIKDKNGAMRAFA---ERAAINGP------IQGGAADIIKRAMIRLPAALAAA 870

Query: 625 VL------TVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            L       VHDE+V E P+     +V  +  +M    S    +PL  E   A  +
Sbjct: 871 GLSARLLLQVHDELVLEAPEAEADATVAVVKQVMEAAAS--LSVPLLVEAGIADTW 924


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 211/690 (30%), Gaps = 129/690 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SAMPSDL 57
           D ET    P            A +      W  E   +       Q         +   L
Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQNGDNLNLEIVLEKL 420

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
              L  +    V  N+ F+  +F    GI +       T V +      L  +L++ C  
Sbjct: 421 RPILASDNYPKVFQNAKFDIDVF-YHQGITVKGL-VFDTMVASYVLHPELTHNLEDLCDR 478

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                        K+L     K   D           + A+  +    K   E T ++  
Sbjct: 479 YL---DGITSLSYKSLGIPGGKTIADLDITTTANYCGLDAYATYLLREKLQAELT-KIPS 534

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                S+ E  L ++   + + G +I+++ +  L + + ++   +++   +   G   + 
Sbjct: 535 LYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLADIEKKAYESI-GETFNL 593

Query: 236 RQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                L   LF    ++            T +S+L          D IL     S     
Sbjct: 594 GSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLIDYILEHRTLSKLKST 653

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L +       R+         + TGR S      QN+P                  
Sbjct: 654 YVDALPKLAEPKTARVHTDFNQT-ITSTGRLSSSNPNLQNIP------------------ 694

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                      S  +R   I  +G  LV AD + IE R+LA ++ E   ++A+ + +D++
Sbjct: 695 ------VRSEFSRRIRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVH 748

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T    F+    +++ E+R++GK +   + Y  GA+ F   +      L          
Sbjct: 749 KVTAQLLFDK--GEITPEERSLGKTINFGVIYGMGAQKFARESK-----LTVEQGRKFIE 801

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              + + Q   +    + Q       + ++G             +  + +L         
Sbjct: 802 KYHQRYAQVFQYLENSKKQAIAQGYVETILGRRRYFNFD-----NPLLKRL--------- 847

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R L   D+  D   LN   +QL+R
Sbjct: 848 ------------------------------------RGLSLHDIDLDSLKLNNEEAQLLR 871

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645
                       +Q  S DI+   M    +        ++L VHDE+V E P   + S+ 
Sbjct: 872 SAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVLEVPREEWPSLE 925

Query: 646 -TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             + + M +  S    +PL  E      + 
Sbjct: 926 SKIKTTMEEAVS--LTVPLLVEIKAGDNWM 953


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 88/703 (12%), Positives = 184/703 (26%), Gaps = 166/703 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
               D ET    PL           A +   ++A  +           S     +     
Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K   + +       T +            +       
Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K       +                   +   EY   D + T +L 
Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADVTLKLK 501

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P    E            L  +   +   G  +D   + +    +     KL++++
Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +   T  +   LF    +             T + +L            +L
Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L E ++   G++  +      + TGR S      QN+P       
Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  N       AD + IE R++A ++G+  
Sbjct: 673 -----------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G DI+  T AK +  P++KV+ + R   K                      G+
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANF--------------GIIYGI 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +  +  + +   + + +  +
Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +  ++  +                                       R+    D+    
Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLPDINSHN 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M         +PL A+  E + +
Sbjct: 877 LNFNIYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/727 (15%), Positives = 199/727 (27%), Gaps = 189/727 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51
           +  D ET S            A QA +   + A  D                   ++   
Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPSGTKIRAAYVPLAHKNGVG 448

Query: 52  ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                               L   L DE+V+ VA N  ++ +L K+     I +K +  T
Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505

Query: 97  SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            +++           +       L  +    K   G                        
Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 550

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
           +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 551 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 610

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
             ++ +L   +AQ   +L+++I     G   +      L   LF   G+     ++    
Sbjct: 611 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 669

Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T  S+L             I++    +       + L   V  + +   T     ++ T
Sbjct: 670 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 729

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  I++ G KL+
Sbjct: 730 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 765

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 766 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 825

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +  +                               
Sbjct: 826 --------------GIIYGISAFGLANQLSIE---------------------------- 843

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
              +      K +  +  G+    +                                   
Sbjct: 844 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 882

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 883 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 926

Query: 618 T--------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666
                         ++L VHDE++ E  D         + S+M     P+    +PLK +
Sbjct: 927 EPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVD 986

Query: 667 GYEAKRY 673
              A  +
Sbjct: 987 ARAATNW 993


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/707 (15%), Positives = 199/707 (28%), Gaps = 161/707 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +        D 
Sbjct: 462 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDK 521

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 522 QLEM--------YEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAA 573

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T + +L           +IL  
Sbjct: 574 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKN 632

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  D R+  T     A  TGR +G     QN+P         
Sbjct: 633 RSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVA-ITGRLAGNNPNLQNIP--------- 682

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 683 ---------------IRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +                    G+   
Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLIYGMGQY 773

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    +   + +     + A++ GV + 
Sbjct: 774 ------------------------------GLAKSLGIDNLSAKNFIDRYFARYPGVAEY 803

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E                                ++     RRL   D++   + +
Sbjct: 804 MQRARECA--------------------------AGQGYVETLFGRRLYLPDIRHTNANI 837

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------------NGYDIVLT 627
               ++  R            +Q  + D++   M + ++                 +++ 
Sbjct: 838 R---ARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQ 888

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+     V   L  +M         +PL AE      +
Sbjct: 889 VHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 935


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/691 (16%), Positives = 206/691 (29%), Gaps = 144/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           +  D ET    PL           A +   A++W+             TE   +   L  
Sbjct: 374 VCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRP 423

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +  DE +  +  N  ++  +  K   + +  K +  T +           +++      L
Sbjct: 424 FFEDEAIEKIGQNLKYDIKVLDKY-NVKVKGKCF-DTMLAHYLINPDMRHNMEVLAETYL 481

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++        GK    +      D P  + T      A   +    +   E      + 
Sbjct: 482 NYTPVSITELIGKKGKNQLNM--RDVPLPNQTEYAAEDADITYQLAQQFKPELEEAKTQE 539

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L   +D E  L  +   +   G  +D   +  L E +  + KKL+ DI +       +  
Sbjct: 540 LF--TDIEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEAGEEF-NIA 596

Query: 237 QTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L   LF    +      ++     T + +LS+        + +L+    +      
Sbjct: 597 SPKQLGDILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYRGLAKLKSTY 656

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   V    GR+        A  TGR S      QN+P                   
Sbjct: 657 VDALPAQVEESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------- 696

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        VR   +       LV AD + IE R++A ++ E   I+AF NGEDI+
Sbjct: 697 -----IRTERGRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIEAFKNGEDIH 751

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            +T +K FN P+++V++EQR+  K +   + Y                D           
Sbjct: 752 ASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD----------- 795

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       L     + +   +   +  +      L +   
Sbjct: 796 ----------------------------LSRAEAKELIDTYYKTYPKLKSYMGGLVDFAR 827

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+ G  + +  A  +   
Sbjct: 828 DNGYVQTVL--------------------------GRRRYLKDINGSNAIVRGAAERN-- 859

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M N  K          ++L VHDE+V +        
Sbjct: 860 -------AVNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEE 912

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + T + S M     +   +PL  E    + +
Sbjct: 913 MKTLIKSEMENA--YKLEVPLDVEVGVGENW 941


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/705 (15%), Positives = 195/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   + + +           +            + 
Sbjct: 339 SFDSETTSLDPMV----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVALDKAAEYAAEDADITL 491

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + L P             + E     + + +   G  ID + + +    IA    +L
Sbjct: 492 RLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSGEIATRLIEL 551

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 552 EGSAYELAGGEF-NLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPK 610

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 611 ILLEHRGLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 665

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G KLV AD + IE R++A I+G+
Sbjct: 666 --------------------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGD 705

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AF+ GEDI+  T ++ FN    +VS +QR + KV+                    
Sbjct: 706 ESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVIN--------------FGLIY 751

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A ++    + A++ 
Sbjct: 752 GMS------------------------------AFGLASNLGITRDAAKMYIDRYFARYP 781

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +   +                                          RRL   ++ G
Sbjct: 782 GVARYMDETRLSAKAKGYVETVF--------------------------GRRLWLPEING 815

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                  A     R            +Q  + D++   M          K G  +++ VH
Sbjct: 816 GNGPRRQAA---ERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVH 866

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE++ E PD     V   L  LM      A  +PL AE      +
Sbjct: 867 DELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 188/707 (26%), Gaps = 165/707 (23%)

Query: 7    DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------SAMP 54
            D ET +            A +A +   + A             +              +P
Sbjct: 433  DTETNALD----------AHRADLVGVSLATAPGRAAYIPLAHRGSEDLFGEGLLPDQLP 482

Query: 55   -----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
                 + L   L D  V+ V  N  ++ ++  +  GI+I    +  T +++         
Sbjct: 483  WDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQP--YDDTMLISYVLDAGKGS 539

Query: 107  SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
              +       L           G                                 Y   
Sbjct: 540  HGMDELARRHLGHQPITFADVTGTG---------------RAKVTFDRVPLDKATAYAAE 584

Query: 166  DVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            D + T  L++ + P    E            L  +   +   G R+D D++ +L    +Q
Sbjct: 585  DADVTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQ 644

Query: 216  ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT 271
               +L+ +I ++  G   S      +   LF   G+            T  ++L      
Sbjct: 645  SLARLEAEIQEMA-GETFSVSSPKQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQ 703

Query: 272  -QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                   IL     S       ++L E    +     T     A+ TGR S      QN+
Sbjct: 704  GHPLPRKILEWRQLSKLKSTYTDSLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNI 763

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            P                                +R   +A  G +L+ AD + IE R+LA
Sbjct: 764  P------------------------IRTEEGRRIRQAFVADAGHQLISADYSQIELRLLA 799

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +A      +AFA+G DI+  T +  F  P+ +++ + R   K +   + Y         
Sbjct: 800  HMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINFGIIYG-----ISA 854

Query: 451  MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                  L + Q   +      FE +    ++    +    +      L G  C       
Sbjct: 855  FGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRVCH------ 908

Query: 511  RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
               +  +                                                 R   
Sbjct: 909  ---YPQIRSNNPQERASVERQAINAPIQGTAADII---------------------RRAM 944

Query: 571  SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
              ++G  +     T                             M           L VHD
Sbjct: 945  VRMEGALAGAGLTTR----------------------------ML----------LQVHD 966

Query: 631  EIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRYR 674
            E+V E P      ++  +  +M + P  A    +PL  E   A  ++
Sbjct: 967  ELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQ 1013


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 190/708 (26%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A D+                       +
Sbjct: 351 FAFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D     V  N  ++  +  +   I++   +   T + +           + 
Sbjct: 401 LEQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMD 458

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 459 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 503

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      I     
Sbjct: 504 TLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLD 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 564 ELEKKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                     A   +R   +A +G K++  D + IE R++A ++
Sbjct: 680 ----------------------IRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     I+ VS EQR   K +                  
Sbjct: 718 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDTYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 794 YPGVMQYMEDTRSTAADKGYVETIF--------------------------GRRLHLPEI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 828 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 878

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 879 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/727 (15%), Positives = 200/727 (27%), Gaps = 189/727 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51
           +  D ET S            A QA +   + A  D                 + ++   
Sbjct: 134 VAFDTETTSLD----------AMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKNGVG 183

Query: 52  ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                               L   L DE+V+ VA N  ++ +L K+     I +K +  T
Sbjct: 184 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 240

Query: 97  SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            +++           +       L  +    K   G                        
Sbjct: 241 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 285

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
           +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 286 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 345

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
             ++ +L   +AQ   +L+++I     G   +      L   LF   G+     ++    
Sbjct: 346 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 404

Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T  S+L             I++    +       + L   V  + +   T     ++ T
Sbjct: 405 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 464

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  I++ G KL+
Sbjct: 465 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 500

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 501 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 560

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +  +                               
Sbjct: 561 --------------GIIYGISAFGLANQLSIE---------------------------- 578

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
              +      K +  +  G+    +                                   
Sbjct: 579 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 617

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 618 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 661

Query: 618 T--------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666
                         ++L VHDE++ E  D         + S+M     P+    +PLK +
Sbjct: 662 EPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVD 721

Query: 667 GYEAKRY 673
              A  +
Sbjct: 722 ARAATNW 728


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/693 (16%), Positives = 204/693 (29%), Gaps = 135/693 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-------SAMPSDL 57
           D ET +  P           +A +      W ++P  +       +         +   L
Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVLDRL 434

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L       V  N+ F+R++FK   GI++     + T + +          L   C  
Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLDGV-VLDTMLASYVLHPEKSHKLSELCEQ 492

Query: 116 L--NFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                +    K    GK           D           + A+  F        E  + 
Sbjct: 493 YLEGITSLDYKDLGIGKKQ------TIADLDIETVAEYCGMDAYATFLLVEPLKNEL-KT 545

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L      L + E+ L  +   + D G  ID + + KL + + Q    L+E+  +      
Sbjct: 546 LSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKF 605

Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L   LF    ++            T  + L          D IL     S  
Sbjct: 606 -NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKL 664

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L E V   D R+         + TGR S      QN+P               
Sbjct: 665 KSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIP--------------- 708

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                         S  +R   I      LV AD + IE R+LA ++ E   + A+ N +
Sbjct: 709 ---------IRTEFSRQIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNAD 759

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T    F+   ++++ ++R +GK +   + Y  G++ F   A      +       
Sbjct: 760 DVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRFAREA-----GVSAVEGKE 812

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 + + +   +   M+ +         ++G                          
Sbjct: 813 FINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRY---------------FNFFDDN 857

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
            +     +  +I   ++                                    +N   SQ
Sbjct: 858 LYRFRGHDPQNIDLNKI-----------------------------------NINYNDSQ 882

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642
           L+R            +Q  S DI+   M    +       +++L VHDE+V E P   + 
Sbjct: 883 LLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVFEIPHQEWE 936

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +   M    +    +PL  E    K + 
Sbjct: 937 ELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 89/703 (12%), Positives = 185/703 (26%), Gaps = 166/703 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
               D ET    PL           A +   ++A  +           S     +     
Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K   + +       T +            +       
Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K       +                   +   EY   D + T +L 
Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADITLKLK 501

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P    E            L  +   +   G  +D   + +    +     KL++++
Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +   T  +   LF    +             T + +L            +L
Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L E ++   G++  +      + TGR S      QN+P       
Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  N       AD + IE R++A ++G+  
Sbjct: 673 -----------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G DI+  T AK +  P++KV+ + R   K                      G+
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANF--------------GIIYGI 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +  +  + +   + + +  +
Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +  ++  +                                       R+   SD+    
Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLSDINSHN 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M         +PL A+  E + +
Sbjct: 877 LNFNVYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/706 (14%), Positives = 196/706 (27%), Gaps = 171/706 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
              ID ET +         +  A    +   + A+D                        
Sbjct: 348 HFAIDTETTNLD-------YRIA---ELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           +   +   L +E V  + H+  ++  +F    GI I    +  T + +           +
Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQGW-YFDTMLASYVLNAAATRHGM 455

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   ++ +    ++   Y   D  
Sbjct: 456 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KSFNQIELEVAAHYAAEDAH 500

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L                 E  +  +   + + G ++D   + +L    ++  
Sbjct: 501 VTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETM 560

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+    +L  G   +      +   LF   G+     +      T +SIL        
Sbjct: 561 QTLENQATELA-GEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKIEHP-- 617

Query: 274 AKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             ++IL     +       + L E    S  R+  +      + TGR S      QN+P 
Sbjct: 618 LAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQA-LTATGRLSSTDPNLQNIP- 675

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G+ L+ AD + IE R++A  
Sbjct: 676 -----------------------IRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHF 712

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +D  + AF  G+D++  T A+     I+ V+ +QR   K +                 
Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+     +                               +              +  
Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFTREESRSYIARYFQ 788

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +   +                                 +     RRL   D
Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628
           +  +   +  A     R             Q  + DI+   M        K+   ++L V
Sbjct: 823 ILANNKMIKQAA---ERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +T    +   +  +M         +P   E  + + +
Sbjct: 874 HDELVFEADETIADELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 191/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            +D ET S +          A QA +   +   +                        + 
Sbjct: 346 AVDTETTSLE----------AMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +L D +   +  +  ++  +F    G+ +   +   T + +       P  + + 
Sbjct: 396 EKLKPWLEDASKPKLGQHLKYDSHIFANY-GVRLAGVK-HDTLLESYVFESHRPHDMDSL 453

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L           GK                      +  A +   EY   D E T 
Sbjct: 454 AARHLERKTITYAEVCGKGASQIG---------------FNEVAIERATEYAAEDAEVTL 498

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L + + P  +            E    ++ Q I   G  ID + + +    + +   ++
Sbjct: 499 ALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERLGQQSHDLGKRMLEI 558

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++    L      +      L   LF    + +V  +      T + +L           
Sbjct: 559 EQQAYDLAGQPF-NLNSPKQLGEILFGKLELPVVKKTASGAPSTDEEVLQKLAEDYPLPK 617

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L+    +       + L + V+   GR+        A  TGR S      QN+P    
Sbjct: 618 VLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIP---- 672

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G  +V AD + IE R++A I+ +
Sbjct: 673 --------------------IRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISED 712

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  +KAFAN EDI+  T A+ F    ++V  EQ                           
Sbjct: 713 ENMLKAFANNEDIHRATAAEIFGIAPEQVESEQ--------------------------- 745

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                              + +  +  L         A    +   A ++    +  +  
Sbjct: 746 -----------------RRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKYFMRFS 788

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +   +                                          RRL   ++  
Sbjct: 789 GVKRYMDETRLQAKARGYVETVF--------------------------GRRLWLPEINS 822

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629
                        R            +Q  + D++   M               +++ VH
Sbjct: 823 PNGPRRQGA---ERAAINAP------MQGTAADLIKMAMIAVQDWLETNSLQTRMIMQVH 873

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P      V   L  LM         +PL AE    K +
Sbjct: 874 DELVLEVPQQELEMVREKLPELMKNVAE--LKVPLLAEVGIGKNW 916


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/694 (13%), Positives = 191/694 (27%), Gaps = 149/694 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58
            L +D ET    P+           A +   +++  +                 +  +  
Sbjct: 393 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 442

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
              +++  + V  N  ++ ++ +   GI+I   R   T V        L  ++       
Sbjct: 443 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIRG-RLFDTMVAHYVLQPELRHNMDYLAEIY 500

Query: 116 LNFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           L++     +   G   K           D   Y C  A+     +   E   +  +A   
Sbjct: 501 LHYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE-- 558

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              +L    + E  L  +   I   G R+D + + +  E      + ++++I  L     
Sbjct: 559 ---KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEF 613

Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287
            +      +   LF    I +    ++     T + +L            IL        
Sbjct: 614 -NIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKKL 672

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L + ++   GR+  +      + TGR S      QN+P               
Sbjct: 673 LSTYIDALPQLINPRTGRIHTSFNQTV-TATGRLSSSNPNLQNIP--------------- 716

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   I  +G     AD + IE R++A ++ +   I AF +G 
Sbjct: 717 ---------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGY 767

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T AK +   I +V+ + R   K                      G+ +   ++  
Sbjct: 768 DIHAATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER- 812

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     + +   +   +  V        +
Sbjct: 813 -----------------------------MNVDRKEAKELIDGYFETYPQVKAYMDKSIQ 843

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+    D+    + +      
Sbjct: 844 VAREHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA-- 875

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+   M    +          ++L VHDE+    P   
Sbjct: 876 -ERNAINAP------IQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKE 928

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M K   +   +PLKA+      +
Sbjct: 929 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 960


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/714 (14%), Positives = 209/714 (29%), Gaps = 170/714 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
            + +D ET S   +           A +   +               ++           
Sbjct: 346 HVAVDTETTSLDEMR----------ADLVGISLCVAAGQACYIPLAHKAGADDLFGSDAR 395

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                   A  + L   L D +++ +  N  ++  +F   LGI +       T +++   
Sbjct: 396 AEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKIFA-LLGIAVAP--IDDTMLMSYAM 452

Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L       K  +  GK+ I        D+  Y    A+  ++ W
Sbjct: 453 HAGLHNHGMDTLSERYLGHIPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADVTLRLW 512

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q+F     +    T  +++ L      ER L  +   +   G ++D D + ++    AQ+
Sbjct: 513 QMFKPQLHQSRVTT--VYETL------ERPLVPVLAQMEMHGIKVDRDTLSRMSNAFAQK 564

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKSILSH 267
              L+++I K+      +      L   LF   G+              +  T   +L  
Sbjct: 565 MAGLEDEIQKMAGRPF-NVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGADVLED 623

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQ 326
                     IL+    +       + L + ++ D GR+  +    GA  TGR +     
Sbjct: 624 LATIHDLPRRILDWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIAGA-ITGRLASTDPN 682

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +A+ G  +V  D + IE 
Sbjct: 683 LQNIP------------------------VRSDEGRRIREAFVAAPGNVIVSLDYSQIEL 718

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA IAG D   +AF +G DI+  T ++ F+ P+D+++ + R   K +           
Sbjct: 719 RILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAIN---------- 768

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A   ++  +  +  
Sbjct: 769 ----FGVIYGISGF------------------------------GLARNLRIPRSDAQGF 794

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +  G+ Q   D                                    +     R
Sbjct: 795 IDRYFERFPGIRQYMDDTVAFARDRGY--------------------------VQTLFGR 828

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GY 622
           R+       + +          R            +Q  + D++   M    K       
Sbjct: 829 RINTP----EINTKGPQAGFAKRAAINAP------IQGTAADVIRRAMIRMPKAIAGLPA 878

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E   T    +  +   +M     P+    + L  +  +   +
Sbjct: 879 KMLLQVHDELLFEVDATAADDLIGIARQVMETASDPAVKLDVKLSVDAGQGPNW 932


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 193/695 (27%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTALDPMI----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDEVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170
               L       +   GK                     +     QL    Y +   EA 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R     D E  + L+ + +   G  ID  L+      IA    +L+    +L  G
Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           L+L     S 
Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+   GR+        A  TGR +      QN+P              
Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IAS G ++V AD + IE R++A I+G+   ++AFA G
Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F     +V+ +QR I KV+                    G+        
Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      A    +   A +L    +  ++ GV Q  +D  
Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTR 795

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 796 TAAKDKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M          +    +++ VHDE+V E PD 
Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELVLEVPDD 880

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  +M         +PL AE      +
Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 194/700 (27%), Gaps = 163/700 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           + +D ET S   +          +A +   ++A +++            E   + +    
Sbjct: 357 ISLDTETTSTNAI----------EAQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRFKA 406

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
              +   + V  N  ++  + +   GI +       T V        L  ++       L
Sbjct: 407 IYENPKTLKVGQNIKYDLEVLRNY-GIALQG-PLFDTMVAHYLLQPELRHNMDFMAEVYL 464

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+         G              P     +     A      Y   D + T +L   
Sbjct: 465 NYETVHIDALIG--------------PKGKAQKNMRELAPSEVYNYACEDADITLQLKNV 510

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P            + E  L  +   +   G RID   + +  ++  +   +L+++I +
Sbjct: 511 LQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ 570

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
              G   +      +   LF    I D    ++     T + +L            IL+ 
Sbjct: 571 AA-GKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDY 629

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            A        ++ L + ++   G +  +      + TGR S      QN+P         
Sbjct: 630 RALKKLLGTYVDALPKLINPRTGHIHTSFNQAV-TATGRLSSSDPNLQNIP--------- 679

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                            G     +R C I   G +   AD + IE RV+A ++ +   + 
Sbjct: 680 ---------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF  G DI+  T AK +N P+ +V++++R   K     +                G+ + 
Sbjct: 725 AFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGII--------------YGITVF 770

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             +  +                                     + +   +      V Q 
Sbjct: 771 GLADRLNIERA------------------------------EAKQLIDGYFKMFPQVQQY 800

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E                                       RR    D+    +  
Sbjct: 801 MEQAKETARANGYVETFFH--------------------------RRRYLPDINSGNA-- 832

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVS 634
            T  +   R            +Q  + DI+   M               ++L VHDE+  
Sbjct: 833 -TVRAIAERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNF 885

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               T    V  +    M     +   +PL A+      +
Sbjct: 886 SVLPTEKEQVERIVMEEMQAA--YLLDVPLVADSGWGNNW 923


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/721 (14%), Positives = 187/721 (25%), Gaps = 185/721 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------------- 49
            D ET S            A  A +   + A           T                 
Sbjct: 379 FDTETSSLS----------ATHAGLCGVSLAVGPNEACYIPLTHEHEPQAGEGGLFGVPG 428

Query: 50  --QSAM--------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
             +  +         + L   L + +V+ V  N+ ++  +  +     I    +  T ++
Sbjct: 429 EAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMARR---GIRVAPYDDTMLI 485

Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           +           +       L       K   G                    ++    A
Sbjct: 486 SYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQ---------------KSFRHVA 530

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDL 205
            +   +Y   D + T  L++ L P    E          R L  +   +   G RID D 
Sbjct: 531 LKPATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDR 590

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261
           + +L         +L+    ++      +      +   LF    +     +      T 
Sbjct: 591 LKRLSSEFGLRMAELEAQAHEIAGRPF-NIGSPRQIGEILFGELNLPGGKKTASGQWGTD 649

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            S+L     T     ++L+    S       + L+ A         T     A+ TGR +
Sbjct: 650 ASVLEDLAATHALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQLAAATTGRLA 709

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA+ G  L+ AD 
Sbjct: 710 SSDPNLQNIP------------------------IRTETGREIRQAFIAAPGHLLISADY 745

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA I       +AF  G DI+  T ++ F  P++ +  E R   K +      
Sbjct: 746 SQIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINF---- 801

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     +                                  +   
Sbjct: 802 ----------GIVYGISAFGLAAQ------------------------------LGIDQG 821

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+                                          + 
Sbjct: 822 EAGAYIKTYFDRFPGIRTYMDKTRAEVRQAG--------------------------FVS 855

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617
               RR+    +               R            +Q  + DI+   M       
Sbjct: 856 TVFGRRIHIPAIHSKSGAERQFG---ERAAINAP------IQGAAADIIRRAMIRMPTAL 906

Query: 618 TKNGY--DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672
            + G    ++L VHDE+V ETP+     ++  +  +M     P+ A  +PL  +   A  
Sbjct: 907 AEAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVMETASDPAVALTVPLVVDARAAPN 966

Query: 673 Y 673
           +
Sbjct: 967 W 967


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 210/702 (29%), Gaps = 164/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
           +L  D ET S            A +A +   ++A+               E   +   L 
Sbjct: 369 QLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLK 418

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
              ++E ++ +  N  ++ ++ K    +++  K    T +           S+       
Sbjct: 419 PVFQNEKILKIGQNIKYDLLILKNY-DVEVKGK-LYDTMLAHYLIEPEGKHSMDWLAEQY 476

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN+         GK    +     +D                   EY   D + T +L +
Sbjct: 477 LNYQPVSITELIGKKGKNQGNMRDVDV--------------DQVTEYASEDADITLQLKE 522

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +L P            + E  L  +   +   G RID   + ++   + +E K+++  + 
Sbjct: 523 KLDPFLKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVY 582

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILN 280
           ++  G+  +      L   LF    +D     ++     T + ILS           IL+
Sbjct: 583 EIA-GVRFNLASPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIARAILD 641

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   ++   G++  T   + A  TGR S      QN+P        
Sbjct: 642 FRQMVKLKSTYVDALPTMINSKTGKIHTTYNQFVA-ATGRLSSINPNLQNIP-------- 692

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +       L+ AD + IE R++A  +G++  
Sbjct: 693 ----------------IRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDESM 736

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF NG DI+ TT AK F  P+++V+ + R   K                      G+ 
Sbjct: 737 IEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANF--------------GIIYGIS 782

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               SQ +                               +  T  + +  A+  +   V 
Sbjct: 783 AFGLSQRLS------------------------------ISRTEAKEIIDAYFKEFPAVK 812

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +      E                              D ++     RR    D+    +
Sbjct: 813 EYMDRAIEKAR--------------------------NDEYVETLLGRRRYLRDINSRNA 846

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEI 632
            +     +               +Q  + D++   M +             ++L VHDE+
Sbjct: 847 TMRGFAERN---------AINAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDEL 897

Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V +        +   +  LM+        +P++ E      +
Sbjct: 898 VFDAHKDEVEILKKNIPELMSNAIK--MDVPVEVEVGTGDDW 937


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 191/708 (26%), Gaps = 172/708 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A D+                       +
Sbjct: 351 FAFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D     V  N  ++  +  +   I++   +   T + +           + 
Sbjct: 401 LEQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMD 458

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    +    Y   D + 
Sbjct: 459 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 503

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L  RL    +            E  L  +   I   G  ID   +      I     
Sbjct: 504 TLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLD 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ +    +      L+  LF   G+         +  T + +L    +    
Sbjct: 564 ELEKKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                     A   +R   +A +G K++  D + IE R++A ++
Sbjct: 680 ----------------------IRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+     I++VS EQR   K +                  
Sbjct: 718 GDQALLDAFRDGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNF--------------GL 763

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 764 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 793

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A                                    RRL   ++
Sbjct: 794 YPGVMQYMEDTRSTAADKGYVETIF--------------------------GRRLHLPEI 827

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626
           K              R            +Q  + DI+ + M                +++
Sbjct: 828 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 878

Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V      +       +  LM         +PL AE      +
Sbjct: 879 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/729 (24%), Positives = 292/729 (40%), Gaps = 96/729 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           ++ +D E+RS + LP  G+  Y+  E   I + +++++   V+ W+  +    P+++ + 
Sbjct: 4   EIRLDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEIRDGK-FPAEVREA 62

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D  V+  A N+ FER++ ++ L I+ P K W CT   A       +L+     L   +
Sbjct: 63  LEDPNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQ 122

Query: 121 HLTKMEEGKALIARFCKG---SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
              K+  GK LI  F K    +  +P        +   W  F  Y ++DV A   + + L
Sbjct: 123 DKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEWL 182

Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
              P  D E +L+ LDQ INDRG  +DLD       +  + + +L   +  +T     + 
Sbjct: 183 APYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITGLE--NP 240

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL----AKDLILNRLASSGSAILK 291
                L+ ++    G    D+ + T+K +L+      +      +++  R+ S+ +++ K
Sbjct: 241 NSPQQLKPWVKAR-GYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGK 299

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE------------- 338
                  V    RLR  LQF GA RT RW+G   Q  NL R  ++ E             
Sbjct: 300 YKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVT 359

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
              +       G  + +P+   + CVRS I A  G + V  DL+ IE  V+AW+A     
Sbjct: 360 NAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPL 419

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           +  F  G   Y     + +     +V+ + R + K   L  GY+ G           GL 
Sbjct: 420 LNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL- 478

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                 +   M            +         K +R  +  V 
Sbjct: 479 --------------------WGYAENMG---------IDMSRQEAHDSVKMYREAYPEVP 509

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           QLWKDL       ++       R       +        +  +LPS RR+ Y   + +  
Sbjct: 510 QLWKDLEAAIIRTIKTKAVTRVRY------VSFEIVGEFLVAILPSGRRMYYHRPRIEKK 563

Query: 579 -------------------------------YLNTATSQLMRERTYGGKLTENIVQAISR 607
                                            N    + +R+ ++GGK+TEN+VQAI+R
Sbjct: 564 KFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAR 623

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAE 666
           +IL  G+ NA K G +IVL VHDEIV+          +  L   MT    W + +P+ A 
Sbjct: 624 EILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAA 683

Query: 667 GYEAKRYRK 675
           G+ A  YRK
Sbjct: 684 GWSAAFYRK 692


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 203/706 (28%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + ID ET S  P+          QA +   ++  +           +             
Sbjct: 341 VSIDSETTSLNPM----------QAKLVGISFCVESHHAAYLPLMHRYPGVPQQLSFDRA 390

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
              L  +L   T   +  N  +++ +F     I +       T + +       P ++ +
Sbjct: 391 LKKLKPWLESATKPKLGQNLKYDKHVFANH-DIQLNGIA-HDTLLQSYVLESHRPHNMDS 448

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L+          GK +                       A     +Y   D + T
Sbjct: 449 LALRHLDVKTISYDDVTGKGVKRIG---------------FDEVAIDTATQYAAEDADIT 493

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P             + E  +  +   I   G  +D  L+ K    + ++   
Sbjct: 494 FRLHQALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHA 553

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L++    ++     +      ++  LF    + +V  +      T + +L    +     
Sbjct: 554 LEQQAYDISGQPF-NLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQQLALDYPLP 612

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L+LN  + S       + L   +  + GR+        A  TGR +      QN+P   
Sbjct: 613 KLLLNYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVA-VTGRLASSDPNLQNIP--- 668

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G +++ AD + IE R++A I+ 
Sbjct: 669 ---------------------VRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQ 707

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  +KAFA GEDI+  T A+    P+++V +EQR   KV+                   
Sbjct: 708 DEGLLKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVIN--------------FGLI 753

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +  +A     + + A++
Sbjct: 754 YGMSEF------------------------------GLATQLGIERSAARAYMERYFARY 783

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             V    +   E    +      +                           RRL   ++ 
Sbjct: 784 PKVESYMQQTREKARRLGYVETVL--------------------------GRRLWLPEIN 817

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628
                         R            +Q  + DI+   M          K    +++ V
Sbjct: 818 NANGNRRQGA---ERAAINAP------MQGTAADIIKLAMIAVHSWLHKEKLHSKLIMQV 868

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E P+     +  +L   M         +PL  E      +
Sbjct: 869 HDELVLEVPENEVALIKSSLPKYMGDVLQ--LDVPLVIEIGVGDNW 912


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 204/700 (29%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSNN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GI++    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLNSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYASEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F  P++KV+ EQR   K +   L Y            
Sbjct: 722 QDEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  +      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/713 (15%), Positives = 194/713 (27%), Gaps = 163/713 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---SAMPSDL- 57
           +  D ET    P            A +      W ++   +       +    ++P  L 
Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGEDLDALAYIPLGHKGSEDSIPEQLS 441

Query: 58  --------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--S 107
                     +L          N+ ++R++  +  GI +     I T +           
Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GIALEGV-VIDTLLADYLRDASAKH 499

Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L+        F         GK                           +    YC  D
Sbjct: 500 GLELMAEREFGFQPTSFTDLVGKKQ------------------TFADVPLEPASLYCGMD 541

Query: 167 VEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           V  TR L   L    +             E+ L  +   +   G RID+  +  L E + 
Sbjct: 542 VHVTRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMG 601

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSN 269
              ++L+ D          +      L   LF   G+D            T  ++L    
Sbjct: 602 STLQQLESDAKAAAGVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLG 660

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                  L+L+    S      ++ L + V +  GR+         + TGR S      Q
Sbjct: 661 NDHPVVPLVLDHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 719

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                             S  +R   +   G  L+ AD + IE R+
Sbjct: 720 NIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQIELRI 755

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           L  ++GE    +A+  G+D++  T         D+VS ++R +GK +   + Y  GA+ F
Sbjct: 756 LTHLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGAQRF 813

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                     + Q           + + +  +     +         + ++G        
Sbjct: 814 -----ARETGVSQSEAKEFLVKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFD 868

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                                                   L     K  + I L  +RR 
Sbjct: 869 R-------------------------------------NGLGRLLGKDPLEIDLDVARR- 890

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD----- 623
                           +Q +R            +Q  S DI+   M              
Sbjct: 891 ------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALLRQGLPA 932

Query: 624 -IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            ++L VHDE+V E       +   L    M +       +PL  E      + 
Sbjct: 933 QLLLQVHDELVLEVAPDALETTRDLVVRTMEQAFE--LSVPLVVETGVGANWM 983


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/719 (15%), Positives = 205/719 (28%), Gaps = 183/719 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET S  P+          QA +   A A           + +             
Sbjct: 390 VALDTETTSLDPM----------QAELCGIALATAPNRAAYLPLSHKNGAEDLLGGGMVD 439

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                    + L   L+D +V+ +  N  ++ +L  +  GI+I    +  T +++     
Sbjct: 440 GQIRVEEALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH-GIEIAP--YDDTMLISYVLEA 496

Query: 106 P---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                        +   +    
Sbjct: 497 GTQAHGMDALAERWLGHTPVSYKEVTGSG---------------RSKVTFDMVGLERATV 541

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+K L P              ER +  +   +  RG  +D  ++ ++  
Sbjct: 542 YASEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSG 601

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267
             AQ    ++E+I +L  G          L   LF   G+     ++     T   +L  
Sbjct: 602 DFAQTAAAMEEEIYRLAGGRFT-IGSPKQLGDILFGRMGLPGGAKTKSGQWSTSAQVLEE 660

Query: 268 SN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                 +L + ++  R  +   +    + L   +    GR+  +     ++ TGR S   
Sbjct: 661 LAAAGHELPRKIVDWRQVTKLKST-YTDALPGYIHPETGRVHTSYSLA-STTTGRLSSSE 718

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R+  IA+ G KL+ AD + I
Sbjct: 719 PNLQNIP------------------------VRTPEGRKIRTAFIAAPGYKLISADYSQI 754

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA +A      KAFA G DI+  T ++ F  P++ +  E R   K +         
Sbjct: 755 ELRVLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINF------- 807

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+                                   A +  +      
Sbjct: 808 -------GIIYGIS------------------------------AFGLANQLSIPRDEAG 830

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
              K +  +  G+    +                                          
Sbjct: 831 AYIKRYFERFPGIRDYMERTKAFCREKGYVETIF-------------------------- 864

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RR  Y +++     +        R            +Q  + DI+   M          
Sbjct: 865 GRRAHYPEIRSSNPSVRAF---NERASINAP------IQGSAADIIRRAMMRMEAALADS 915

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E P+        +   +M     P+ +  +PLK +   A  +
Sbjct: 916 GLVDVKMLLQVHDELVFEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDARAADNW 974


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     ++ 
Sbjct: 357 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGVPVQLDRTQ 406

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  G+++       T + +           +
Sbjct: 407 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 464

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 465 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 509

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D E  L  +   I   G  +D   + + +  +++  
Sbjct: 510 ITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRM 569

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 570 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 628

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 629 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 686

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 687 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 723

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 724 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------G 769

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 770 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 799

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 833

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M               ++L
Sbjct: 834 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 884

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 885 QVHDELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/727 (15%), Positives = 199/727 (27%), Gaps = 189/727 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51
           +  D ET S            A QA +   + A  D                   ++   
Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYLPLAHKNGVG 448

Query: 52  ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                               L   L DE+V+ VA N  ++ +L K+     I +K +  T
Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505

Query: 97  SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            +++           +       L  +    K   G                        
Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 550

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
           +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 551 LVDIDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVD 610

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
             ++ +L   +AQ   +L+++I     G   +      L   LF   G+     ++    
Sbjct: 611 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 669

Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T  S+L             I++    +       + L   V  + +   T     ++ T
Sbjct: 670 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 729

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  I++ G KL+
Sbjct: 730 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 765

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 766 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 825

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +  +                               
Sbjct: 826 --------------GIIYGISAFGLANQLSIE---------------------------- 843

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
              +      K +  +  G+    +                                   
Sbjct: 844 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 882

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 883 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 926

Query: 618 T--------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666
                         ++L VHDE++ E  D         + S+M     P+    +PLK +
Sbjct: 927 EPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVD 986

Query: 667 GYEAKRY 673
              A  +
Sbjct: 987 ARAATNW 993


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/707 (14%), Positives = 183/707 (25%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D ET +  P+           A +   + A + +                   + A+
Sbjct: 316 FAFDTETTALDPMK----------ARLVGISLALEPDEAFYIPVGHAYEGAPVQLDRDAV 365

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L     +  +  +  N  ++  +  +  G  I       T + A           L 
Sbjct: 366 LRILAPAFENTKITKIGQNVKYDWTVLSRC-GFKIDG-PVFDTMIAAYLLNPTRRSYGLD 423

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   G                    +       +    Y   D + 
Sbjct: 424 RLAADYLNHRMISYQDVTGTGKN---------------AKCFSAVPLEEAIPYAAEDADI 468

Query: 170 TRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L                E  L  +   +   G  +D + +  L + +  + +K
Sbjct: 469 TFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEK 528

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLA 274
           L+ +I     G   +      L + LF   G+             T   +L+        
Sbjct: 529 LEGEIY-GLAGETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDADVLTTLADHHEL 587

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L     +       + L+E +    GR+  +     A+ TGR S      QN+P  
Sbjct: 588 PALLLRHRTLAKLKSTYADALAELILPETGRIHTSFNQT-ATATGRLSSTDPNLQNIP-- 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +   G   V AD + +E R+LA  +
Sbjct: 645 ----------------------IRTEEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   I+AF N EDI+  T ++ F    + ++++ R   K +                  
Sbjct: 683 QDPILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQAKAINF--------------GI 728

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +     +    ++ ++
Sbjct: 729 VYGISPF------------------------------GLARDLGISQKMAKNYMDSYFSR 758

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  V +             Q                                R     D+
Sbjct: 759 YSRVKEFMDKAIADARETGQTRTMF--------------------------GRIRYLPDI 792

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLT 627
                   T      R            +Q  + DI+   M    K          ++L+
Sbjct: 793 DSPN---RTLQGYAERAAI------NTPIQGTAADIMKLAMIATEKALAKEKLVSVMLLS 843

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDEIV E P     +V  L   +M      A  + LK    +   +
Sbjct: 844 VHDEIVLECPPDEVKTVSALVADIMENVCDLA--VRLKVNVAQGSNW 888


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/712 (14%), Positives = 198/712 (27%), Gaps = 166/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
           ++ +D ET +                 +   + A                          
Sbjct: 338 QIAVDTETDALSSTASG----------LVGISLATAPGRACYIPLAHVDPQGTGDMFDTG 387

Query: 50  --QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                +P       L   L D  V+ +  N  ++  +  +  GID+    +  T +++  
Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY-GIDVAP--YDDTMLISYV 444

Query: 103 NGLP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K     GK  I         +  Y    A+  ++ 
Sbjct: 445 MEAGLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDKVPLDKATLYAAEDADITLRL 504

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W++          AT  +++ L      ER +  +   +   G ++D D + +L     Q
Sbjct: 505 WEILKPALVAKKMAT--VYETL------ERPMADVLSKMERVGIKVDPDQLNRLSSDFGQ 556

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT 271
           +    + +  +       +      +   LF   G+     ++     T  ++L      
Sbjct: 557 KMMAAEAEAHEAAGRDF-NVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQLAAE 615

Query: 272 -QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +       ++L   ++ D +   T     A+ TGR S      QN+
Sbjct: 616 GHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNI 675

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                            A   +R   IA  G  LV AD + +E R+LA
Sbjct: 676 P------------------------IRTEAGRQIREVFIAEPGHVLVAADYSQVELRLLA 711

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA  +   +AF +G DI+  T ++ F  PI+ +    R   K +               
Sbjct: 712 HIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAIN-------------- 757

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  +     +    A+
Sbjct: 758 FGVIYGIS------------------------------AFGLANQIGVKRDEAKAFIDAY 787

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             K  G+     ++    A                                    RR  +
Sbjct: 788 FEKFPGIRAYMDEMKAKAAETGYVETIF--------------------------GRRAHF 821

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624
             ++     +        R+           +Q  + D++   M               +
Sbjct: 822 PGIRDKNPNMRMFA---ERQAINAP------IQGSAADVIRRAMIRMDDALNAANLDAKM 872

Query: 625 VLTVHDEIVSETPDTPYFSVGTL-CSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E P+     +  L   +M +   P+    +PL  +    + +
Sbjct: 873 LLQVHDELVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDAKAGRTW 924


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 94/691 (13%), Positives = 194/691 (28%), Gaps = 143/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDLL 58
            L +D ET    P+           A +   +++  +          E+     +  +  
Sbjct: 364 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 413

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
              ++E  + V  N  ++ ++ +   GI++  K    T V        L  ++       
Sbjct: 414 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGK-LFDTMVAHYVLQPELRHNMDYLAEIY 471

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++     +   G     +  K   D  P +        A          + E  +   +
Sbjct: 472 LHYQTIHIEELIG--PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAE 529

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E      + ++++I  L +G   + 
Sbjct: 530 KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEF-NI 586

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 587 ASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLST 646

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 647 YIDALPQLINPKTGRIHTSFNQTV-TATGRLSSSNPNLQNIP------------------ 687

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G     AD + IE R++A ++ +   I AF +G DI+
Sbjct: 688 ------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDIH 741

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I +V+ + R   K                      G+ +   ++     
Sbjct: 742 AATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 783

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V        +   
Sbjct: 784 --------------------------MNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAR 817

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+    + +     +   
Sbjct: 818 EHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAERN-- 849

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          ++L VHDE+    P      
Sbjct: 850 -------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 902

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M K   +   +PLKA+      +
Sbjct: 903 VEQVVIEEMEKA--YRMHVPLKADCGWGTNW 931


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 186/702 (26%), Gaps = 158/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
             +  D ET S  P+           A I   +++ +                       
Sbjct: 351 KLMCFDTETTSLDPMT----------AKIVGMSFSVEAGSAAYLPLKHDYFDAPEQLDFV 400

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  V  N  +++ +     GI +       T + +          +
Sbjct: 401 ETLAKIKPILENAAIKKVGQNFKYDQHVLANH-GIALNGIA-HDTMLESYVFESHKTHGM 458

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L       +   GK                      +    ++  EY   D +
Sbjct: 459 DALAERHLGIQTISFEEVAGKGAKQ---------------VTFNQVTVEVASEYAAEDAD 503

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + + P               E     +  TI   G  ID D++      I  + 
Sbjct: 504 ITLQLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKL 563

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQL 273
             L+    +L      +      L+  LF   GI         +  T + +L    +   
Sbjct: 564 VALENQAYELAGQPF-NLGSPKQLQEILFDKLGIKPTKKTPSGAPSTDEDVLQELALDHP 622

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              ++L     +       + L + ++   GR+  +     A  TGR +      QN+P 
Sbjct: 623 LPKVLLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVA-ITGRLASSDPNLQNIP- 680

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 681 -----------------------VRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHL 717

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  + AFAN EDI+  T A+ F    + V  EQR   KV+   L Y           
Sbjct: 718 SKDEGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMS-----AFG 772

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L++++ +        F  +     +    ++   +    +   G    +       
Sbjct: 773 LAQNLNIERGAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWV------- 825

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +         G                                       +L    
Sbjct: 826 --PEINSPNGTRRAGAERAAINAPMQGTAADLI---------------------KLAMIA 862

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           V            + +R      KL   I+Q                    +VL      
Sbjct: 863 VD-----------KWLRHEKLQTKL---IMQ-------------VHDE---LVL------ 886

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             E PD     V   L  LM         +PL AE      +
Sbjct: 887 --EVPDNELELVKQKLPELMQNVAK--LDVPLLAEVGVGSNW 924


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 186/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     +  
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPAQLERRQ 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  GI +       T + +           +
Sbjct: 406 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYS-DDTLLQSFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         +      Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             + E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M +             ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDAWIADHAEHALMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +G + + M+        +PL  +      +
Sbjct: 884 QVHDELVFEADADFVDTLLGEVTARMSAAAE--LRVPLVVDSGVGDNW 929


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/710 (14%), Positives = 203/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +   +           +            
Sbjct: 347 YVAVDTETTGLNEMT----------AELVGISLCVEPGTACYIPLIHKAAGSDDLFGSDD 396

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L DE+++ +  N  ++  +F +   + I       T +++  
Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQ---VGITVAPIDDTMLMSYA 453

Query: 103 NG---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ I        ++ PY    A+  ++ 
Sbjct: 454 MHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEAVPYAAEDADVTLRL 513

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ F     R      ++++ L      ER +  +   +   G ++D D + ++    +Q
Sbjct: 514 WQQFKPALHRAQVT--KVYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQ 565

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L++++  L      +      L   LF   G+      +     T   +L      
Sbjct: 566 KMAALEDEVYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDLATE 624

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 IL+    S       + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 684 P------------------------IRSEEGRRIREAFVAEEGKTLVALDYSQIELRILA 719

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA       AF +G+DI+  T ++ F+ P+D+++ E R   K +               
Sbjct: 720 HIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN-------------- 765

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++  +  +     +
Sbjct: 766 FGVIYGISGF------------------------------GLARNLRIPRSEAQGFIDRY 795

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     D                                    +     RR+  
Sbjct: 796 FERFPGIRAYMDDTKAFAKEHGY--------------------------VETLFGRRIHT 829

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
            ++               R            +Q  + D++   M        +    ++L
Sbjct: 830 PNI----GAKGPQAGFAARAAINAP------IQGTAADVIRRAMIRMPAAIAELPAKMLL 879

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E       ++     S+M     P     + L  +  +   +
Sbjct: 880 QVHDELLFEVDQGAQDALIEAARSVMESAADPVVHLDVKLTVDAGQGPNW 929


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/702 (14%), Positives = 197/702 (28%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
           ++  D ET S   L          +A +   ++ W                   +     
Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKAATTKLLETFR 410

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
            +  +E +  V  N  ++  + +    I++       T +           ++       
Sbjct: 411 PFFENEHIGKVGQNLKYDLKVLQNY-NIEVRG-ALFDTMIAHYLLNPDMRHNMDILSETY 468

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN++    +   GK    R  +                       EY   D + T +L  
Sbjct: 469 LNYTPIAIESLIGKGKAQRSMRTV---------------PLDQVKEYAVEDADVTWQLKN 513

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                          +D E  L  +   +   G  +D+  + +  + +  +  +L+  I 
Sbjct: 514 VFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIA 573

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      L   LF    ID     ++     T + +L+           IL 
Sbjct: 574 EQA-GENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILE 632

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   V+   GR+  T     A  TGR S      QN+P        
Sbjct: 633 WRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVA-ATGRLSSNNPNLQNIP-------- 683

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   VR   IA      L+ AD + IE R++A ++ E   
Sbjct: 684 ----------------IRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNM 727

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I +F   EDI+ +T AK F+ P+++V++EQR+  K +   +                G+ 
Sbjct: 728 IDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVS 773

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               S                                  L  +  + +   + A +  + 
Sbjct: 774 AFGLSAQ------------------------------TNLSRSESKELIDTYYATYPNLR 803

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                  +           +                           RR    D+     
Sbjct: 804 NYISKQIQFAQEHGYVETVL--------------------------GRRRYLPDIHSRNQ 837

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +  A  +               +Q  + DI+   M               ++L VHDE+
Sbjct: 838 VVRGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDEL 888

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V + P T   +V   +   M    + A  +PL A+      +
Sbjct: 889 VFDVPKTELNTVKPLIKEAMESAFTLA--VPLVADLGVGDNW 928


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 194/706 (27%), Gaps = 169/706 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             +D ET    P+          QA +   +++++ +       T               
Sbjct: 313 FALDTETTGLDPM----------QASLVGMSFSYEADRAFYAPLTHDYLGAPDQVGVEKA 362

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLK 110
              L   L +  +  +  N  ++ I+  +  G D+    +  T V +           L 
Sbjct: 363 LEILGPVLSNPEIKKIGQNIKYDWIVLARH-GADLQGVAF-DTMVASYLLNPSHRSHGLD 420

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +    +    Y   D + 
Sbjct: 421 QIAMELLEHRMISYEEVCGKGAK---------------AITFNQVPLEKAVPYACEDADV 465

Query: 170 TRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T +++  L P  +           E  L  +   +   G  +D D +  L +      + 
Sbjct: 466 TFQIYGLLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMES 525

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLA 274
            +++I +L      +      L   LF   G+             T   +L+        
Sbjct: 526 AEKEIYQLAGEEF-NIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHEL 584

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL   + +      ++ L   +    GR+  +      + TGR S      QN+P  
Sbjct: 585 PALILRYRSVAKLKSTYVDALQSLIHPETGRVHTSFNQNV-TATGRLSSSNPNLQNIP-- 641

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I   G ++  AD + IE R+LA ++
Sbjct: 642 ----------------------IRTPEGKRIREAFIPRKGWEMFCADYSQIELRILAHLS 679

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +++ I+ F +GEDI+  T ++ F    + V+ E R   K +                  
Sbjct: 680 QDEFLIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINF--------------GI 725

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+   + S  +                               +     +     +   
Sbjct: 726 IYGMGAFRLSNEI------------------------------GVSRKTAQRYIDNYFVT 755

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++GV +  ++              +                           R     D+
Sbjct: 756 YKGVKKFIEETIALAHETGMTKTLL--------------------------GRTRPLPDI 789

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                 L  A     R  T         +Q  + D++   M               ++LT
Sbjct: 790 NAKNRVLMEAA---ERIAT------NTPIQGTAADLIKVAMIKVQNALEEQNMQTKMLLT 840

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E+P    F    L   M +   W   + LK      K +
Sbjct: 841 VHDELVFESPPEEIFQAQVLAEQMMEGV-WDLDVALKVNIESGKNW 885


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/702 (14%), Positives = 201/702 (28%), Gaps = 166/702 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQ 59
           +  D ET   + L          +  +   A++W+           D++E +A+  +   
Sbjct: 372 VCFDTETTGLKAL----------EVELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRP 421

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGL--PSSLKNACL-A 115
           +    T+  V  N  ++  +       D+P   +   T +           ++       
Sbjct: 422 FFESTTIEKVGQNLKYDIKVLSNY---DMPVKGQLFDTMIAHYLINPDMRHNMDVLSETY 478

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN+         GK    +                      +   EY   D + T +L +
Sbjct: 479 LNYQPVSIVELIGKKGKNQLS--------------MRQVPLEQQTEYAVEDADITYQLKE 524

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             I   +           E  L  +   +   G  +D D + +L + +A +  +L++DI 
Sbjct: 525 HFIKELESGHLTKLFSDVEVPLVSVLSAMEIEGINLDPDFLGELSKALAVDIDRLEKDIY 584

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILN 280
           +       +      L   LF    + D    ++     T + +LS+          IL 
Sbjct: 585 EQAGEEF-NIGSPKQLGPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADILE 643

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   ++    R+        A  TGR S      QN+P        
Sbjct: 644 WRQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVA-ATGRLSSNNPNLQNIP-------- 694

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   VR   +       L+ AD + IE R++A ++ ED  
Sbjct: 695 ----------------IRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTM 738

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF +G DI+ +T ++ FN P+++V++EQR+  K +   + Y                D
Sbjct: 739 MQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD 793

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                                  L  +  + +   +   +  + 
Sbjct: 794 ---------------------------------------LTRSESKELIDTYYETYPKLK 814

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +              +                           RR    D+    +
Sbjct: 815 AYMSNQVAFARENGYVETVL--------------------------GRRRYLKDINSRNA 848

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +  A  +               +Q  + DI+   M N             ++L VHDE+
Sbjct: 849 IVRGAAERN---------AVNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDEL 899

Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V +        +   +   M         +PL  E    + +
Sbjct: 900 VFDAHKDELEIIKPIIKEEMENAFK--MEVPLDVEIGVGQNW 939


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/702 (15%), Positives = 189/702 (26%), Gaps = 158/702 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           + +D ET S Q          A  A +   ++A             +S            
Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385

Query: 53  ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLP 106
              + + L   L D       HN  ++  + ++  GI++       + +LA        P
Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIA-ADSMLLAYCLYPAKYP 443

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            SL +     LN+         GK              + PY C  A+            
Sbjct: 444 PSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSIATPYACEDADIALRLTGLLS-- 501

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                A      RL    + E  L  +   I   G  +D +++  L         +L+  
Sbjct: 502 -----AQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIAELESQ 556

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLIL 279
           I         + +    L + LF    I     ++     T + +L           LIL
Sbjct: 557 IHAAAGEKF-NIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEVPRLIL 615

Query: 280 NRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                +       + L + +    GR+  +      + TGR S      QN+P       
Sbjct: 616 QVRQLAKLKSTYTDALPKLIHRTTGRVHTSFNQA-ITTTGRLSSSDPNLQNIP------- 667

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G  L+ AD + IE R++A  +G+   
Sbjct: 668 -----------------IRSAEGREIRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAAL 710

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
             AFANGEDI+  T A      ++ VS E R   K +                    G+ 
Sbjct: 711 CAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAIN--------------FGILYGMS 756

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A +  +     +     +  ++  V 
Sbjct: 757 ------------------------------AFGLAKQLNISRGEAQTFIDTYFERYPSVR 786

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               D              +  R                  I   +  R  Y        
Sbjct: 787 GFMDDTLVLAREQGYVETLLGHRVYVPE-------------ISSSNGMRRAY-------- 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
                     R             Q  + DI+   M +  +          I+L VHDE+
Sbjct: 826 --------AERTAINAPL------QGSAADIIKVAMIHLHRRLRQEAPAAAIILQVHDEL 871

Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           + E P     +V  +    M +  +    +PL  +      +
Sbjct: 872 IVEAPVDQIDAVSAIMRQTMEQAVT--LEVPLTVDIGSGHSW 911


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 204/700 (29%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE  + V  N  F++ +  +  GI++    +  T + +           + 
Sbjct: 405 LATLKPLLEDEKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLNSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEEAGPYASEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F  P++KV+ EQR   K +   L Y            
Sbjct: 722 QDEGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  +      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQES----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/693 (16%), Positives = 204/693 (29%), Gaps = 135/693 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-------SAMPSDL 57
           D ET +  P           +A +      W ++P  +       +         +   L
Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVFDRL 434

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L       V  N+ F+R++FK   GI++     + T + +          L   C  
Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLDGV-VLDTMLASYVLHPEKSHKLSELCEQ 492

Query: 116 L--NFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                +    K    GK           D           + A+  F        E  + 
Sbjct: 493 YLEGITSLDYKDLGIGKKQ------TIADLDIETVAEYCGMDAYATFLLVEPLKNEL-KP 545

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L      L + E+ L  +   + D G  ID + + KL + + Q    L+E+  +      
Sbjct: 546 LSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKF 605

Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L   LF    ++            T  + L          D IL     S  
Sbjct: 606 -NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKL 664

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L E V   D R+         + TGR S      QN+P               
Sbjct: 665 KSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIP--------------- 708

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                         S  +R   I      LV AD + IE R+LA ++ E   + A+ N +
Sbjct: 709 ---------IRTEFSRRIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNAD 759

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T    F+   ++++ ++R +GK +   + Y  G++ F   A      +       
Sbjct: 760 DVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRFAREA-----GVSAVEGKE 812

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 + + +   +   M+ +         ++G                          
Sbjct: 813 FINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRY---------------FNFFDDN 857

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
            +     +  +I   ++                                    +N   SQ
Sbjct: 858 LYRFRGHDPQNIDLNKI-----------------------------------NINYNDSQ 882

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642
           L+R            +Q  S DI+   M    +       +++L VHDE+V E P   + 
Sbjct: 883 LLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVFEIPHQEWE 936

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +   M    +    +PL  E    K + 
Sbjct: 937 ELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/706 (14%), Positives = 201/706 (28%), Gaps = 158/706 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
            + ID ET S   +          QA +   + A +           +            
Sbjct: 347 YVAIDTETTSLNEM----------QAELVGISLAVEPGQACYIPLGHREGASDDLFGSDA 396

Query: 52  ----AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                +P D     L   L D  V+ +  N  ++  +F    G+ +       T +++  
Sbjct: 397 LAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFA---GLGLTIAPIDDTMLMSYA 453

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ +        ++  Y    A+  ++ 
Sbjct: 454 LNSGIHNHGMDALSERYLAHNPIPIKTLLGTGKSAVTFDKVPIDEAVKYAAEDADITLRL 513

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W +F     +    T  +++ L      ER L  +   +   G  +D D++ ++    AQ
Sbjct: 514 WHMFKPQLHQKQVTT--VYETL------ERPLVPVLARMERHGILVDRDVLSRMSNAFAQ 565

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF    ++     +     T   +L      
Sbjct: 566 KMGGLEAEIHELA-GRSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLEDLATE 624

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L + +  + GR+  +    GAS TGR +      QN+
Sbjct: 625 HELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGAS-TGRLASTDPNLQNI 683

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK+LV  D + IE R+LA
Sbjct: 684 P------------------------VRSEEGRRIREAFVADAGKRLVSLDYSQIELRILA 719

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +AG D   +AF +G DI+  T ++ F  P+D+++ + R   K +   + Y         
Sbjct: 720 HVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYG-----ISG 774

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L + +          FE +    ++     +          L G          
Sbjct: 775 FGLARNLRIPRAEAQGFIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHT----- 829

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +              +                                      
Sbjct: 830 ----PEIAAKGPRAGFAKRAAINAPIQ--------------------------------- 852

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                      TA   + R      +           D+ C+ +               D
Sbjct: 853 ----------GTAADIIRRAMIRMPEAI--------ADLPCKMLLQVH-----------D 883

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
           E++ E  +    +V      +M      A    +PL  +      +
Sbjct: 884 ELLFEAEEDAVDAVITAAREVMEGAADPAVHLDVPLTVDAGSGMNW 929


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/711 (14%), Positives = 199/711 (27%), Gaps = 167/711 (23%)

Query: 1   MSKL------FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---- 50
           M +L        D ET S   +          QA +   ++A                  
Sbjct: 318 MKRLETAELFAFDTETTSLDYM----------QAQVVGVSFAVKTGEAAYLPLAHDYADA 367

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                       L   L       + H+  ++R +     GI++       T + +    
Sbjct: 368 PQQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIE-HDTMLESYVLN 425

Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  + +     L++     +   GK                D T            
Sbjct: 426 STASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQ---IPFSQVRIEDAT------------ 470

Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L + L P             + E  L  +   +   G ++D + +   
Sbjct: 471 PYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERLFAQ 530

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL 265
              +A+   +++ +  ++  G   +      ++  L+    +            T + +L
Sbjct: 531 SHELAERMGQIEREAHEVAGGAF-NLGSPKQIQEILYERQKLPVLRKTPKGQPSTAEDVL 589

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324
               +      LIL   + S       + L E +  D GR+  +     AS TGR S   
Sbjct: 590 EQLALDYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVAS-TGRLSSSD 648

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +A +G++LV AD + I
Sbjct: 649 PNLQNIP------------------------IRTEEGRRIRQAFVAPSGRRLVAADYSQI 684

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A ++G+   ++AFA G+DI+  T A+ F   +D+VS EQR   K +   L Y   
Sbjct: 685 ELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMS 744

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L +++          F  +   + +    +++  +    + L G    
Sbjct: 745 -----AFGLARQLGIERGDAQDYVDRYFARYPGVKDYMESTREKARDLGYVETLFGRRLY 799

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           L           +      +        +      +A  +     + + +  R+  I   
Sbjct: 800 L---------PDINARNGQIRAQAERVAINAPMQGTAADIIKRAMIQVDQWIRESRIP-- 848

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                                                        ++             
Sbjct: 849 -------------------------------------------AVMI----LQVHDE--- 858

Query: 624 IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +VL V         +     V   LC  M++       +PL  E      +
Sbjct: 859 LVLEV--------DEDAVDKVREELCVRMSQAAE--LKVPLVVEAGVGDNW 899


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/719 (14%), Positives = 202/719 (28%), Gaps = 184/719 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET S   +           A +   +             T +            
Sbjct: 342 YVAVDTETTSLNEMR----------AELVGVSLCVMAGQACYIPLTHKGGAADDLFGDDA 391

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                       + L   L D++++ +  N  ++  +FK+ +GI +       T +++  
Sbjct: 392 LAEGQMDFEDCLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGITVDP--IDDTMLMSYA 448

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                   S+       L  +    K  +  GK+ I        ++              
Sbjct: 449 MNAGLNRHSMDVLSEQYLGHTPIPIKPLLGAGKSAITFDRVPVEEAV------------- 495

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLV 206
               +Y   D + T  L++ L P              ER L  +   +   G ++D D +
Sbjct: 496 ----KYAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTL 551

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLK 262
            ++    AQ+   L++++ +L  G   +      +   LF   G++           T  
Sbjct: 552 SRMSNAFAQKMAGLEDELYELAGGKF-NVGSPAQVGEILFDQMGLEGGKKGKTGKYATGA 610

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
            IL           L+L+    S       + L   ++   GR+  +    GA+ TGR S
Sbjct: 611 DILEDLATEHGFPGLVLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGAN-TGRLS 669

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA  GK LV  D 
Sbjct: 670 STDPNLQNIP------------------------IRTDEGRKIREAFIADEGKVLVALDY 705

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +A  D   +AF +G DI+  T ++ FN P+D+++ + R   K +      
Sbjct: 706 SQIELRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINF---- 761

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A   ++   
Sbjct: 762 ----------GVIYGISGF------------------------------GLARNLRIPRA 781

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +  +  G+     D                                    + 
Sbjct: 782 EAQGFIDRYFERFPGIRTYMDDTVAFAKE--------------------------HNRVE 815

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               R++       + +          R            +Q  + D++   M       
Sbjct: 816 TLFGRKIHTP----EINAKGPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDAAI 865

Query: 621 ---GYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E         +     +M     P     +PL  +      +
Sbjct: 866 AHLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVMENAANPVVKFDVPLVVDAGIGATW 924


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/706 (14%), Positives = 195/706 (27%), Gaps = 171/706 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
              ID ET +         +  A    +   + A+D                        
Sbjct: 348 HFAIDTETTNLD-------YRIA---ELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           +   +   L +E V  + H+  ++  +F    GI I    +  T + +           +
Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQGW-YFDTMLASYVLNAAATRHGM 455

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 456 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIELEVAAHYAAEDAH 500

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L                 E  +  +   + + G ++D   + +L    ++  
Sbjct: 501 VTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETM 560

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+    +L  G   +      +   LF   G+     +      T +SIL        
Sbjct: 561 QTLENQATELA-GEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKIEHP-- 617

Query: 274 AKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             ++IL     +       + L E    S  R+  +      + TGR S      QN+P 
Sbjct: 618 LAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQA-LTATGRLSSTDPNLQNIP- 675

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G+ L+ AD + IE R++A  
Sbjct: 676 -----------------------IRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHF 712

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +D  + AF  G+D++  T A+     I+ V+ +QR   K +                 
Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+     +                               +              +  
Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFTREESRSYIARYFQ 788

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +   +                                 +     RRL   D
Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628
           +  +   +  A     R             Q  + DI+   M        K+   ++L V
Sbjct: 823 ILANNKMIKQAA---ERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  +T    +   +  +M         +P   E  + + +
Sbjct: 874 HDELVFEADETITDELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 205/705 (29%), Gaps = 166/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMP 54
           ++ +D ET S  P+           A +   + A+                       + 
Sbjct: 354 QIGLDTETTSLDPM----------NARLVGISMAFAAGEAVYIPINHTFAEQQLSWETLL 403

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNA 112
             L  YL  +T++ +  N  +++ +F    GI +         + +      L   L   
Sbjct: 404 GSLKPYLESKTLLKIGQNLKYDQHVFANH-GIQLQGIA-GDAMLASYVLESHLGHGLDEL 461

Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                    +    + +   EY  +D +   
Sbjct: 462 AQRWLGLETITYESLCGKGAKQ---------------ISFADVSVEQATEYACQDADFAL 506

Query: 172 ELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   L             + E  +  +   +   G  ID   + +    +  E  KL++
Sbjct: 507 RIEAHLKAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLKLEQ 566

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKD 276
               L      +      L+  LF   GI    + +       T +++L    +      
Sbjct: 567 QAYDLAGQPF-NLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYPLPK 625

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +IL   + +       + L E ++ +  R+        A  TGR +      QN+P    
Sbjct: 626 IILQNRSLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVA-ITGRLASNNPNLQNIP---- 680

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   IA     +V AD + IE R++A ++G+
Sbjct: 681 --------------------IRTSEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGD 720

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              I+AF NGED++  T A+ F    + ++ EQR   K +                    
Sbjct: 721 ATLIEAFKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTIN--------------FGLIY 766

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+     ++++   +                                 ++  K + A++ 
Sbjct: 767 GMSSYGLAKSLGIDNAS------------------------------ADMFIKRYFARYT 796

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    +   E  A +                            +     RRL   D+  
Sbjct: 797 GVADYMQRTKEQAADLGY--------------------------VETLFGRRLYLPDIHA 830

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629
             +    A +   R            +Q  + D++   M               + + VH
Sbjct: 831 KNA---QARAGAERAAINAP------MQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVH 881

Query: 630 DEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P +     V  + +LM         +PL AE    K +
Sbjct: 882 DELVLEVPKSEQERIVQNIPALMASVGKGVLDVPLVAEVGIGKNW 926


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/729 (15%), Positives = 200/729 (27%), Gaps = 190/729 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---------VKLWDRTE---- 49
            +  D ET S              QA I   + A  D                       
Sbjct: 400 IVAFDTETTSLD----------VMQAEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGV 449

Query: 50  ---------QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
                     + +P       L   L D +V+ +A N  ++ +L K+  GI+     +  
Sbjct: 450 GDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYDYLLMKRY-GIETKG--FDD 506

Query: 96  TSVLARTNG----LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
           T +L+            + +     L       K   G                      
Sbjct: 507 TMLLSYVLDGGANATHGMDSLSERWLGHKPIAYKDVAGSG---------------KSNIT 551

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYR 200
             +        Y   D + T  L+  L P              ER L  +   + +RG  
Sbjct: 552 FDLVDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGIT 611

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           ID  ++ +L   +AQ   +L+++I     G   +      L   LF   G+     ++  
Sbjct: 612 IDRQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTG 670

Query: 259 --GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
              T   +L             I++    +       + L   V  + +   T     ++
Sbjct: 671 QWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLAST 730

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                                +R+  I++ G K
Sbjct: 731 TTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHK 766

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ +  E R   K +
Sbjct: 767 LISADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAI 826

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+     +  +                             
Sbjct: 827 NF--------------GIIYGISAFGLANQLSIE-------------------------- 846

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
                +      K +  +  G+    +                                 
Sbjct: 847 ----RSEAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIF----------------- 885

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR+ + +++     +        R            +Q  + D++   M 
Sbjct: 886 ---------GRRVHFPEIRSSNPSVRAF---NERASINAP------IQGSAADVIRRAMI 927

Query: 616 NATKNGY--------DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLK 664
                           ++L VHDE++ E  D     S   + S+M     P+    +PLK
Sbjct: 928 KMEPALADAGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLK 987

Query: 665 AEGYEAKRY 673
            +   A  +
Sbjct: 988 VDARAANNW 996


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 94/691 (13%), Positives = 194/691 (28%), Gaps = 143/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDLL 58
            L +D ET    P+           A +   +++  +          E+     +  +  
Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 419

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
              ++E  + V  N  ++ ++ +   GI++  K    T V        L  ++       
Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGK-LFDTMVAHYVLQPELRHNMDYLAEIY 477

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++     +   G     +  K   D  P +        A          + E  +   +
Sbjct: 478 LHYQTIHIEELIG--PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAE 535

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E      + ++++I  L +G   + 
Sbjct: 536 KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEF-NI 592

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 593 ASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLST 652

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 653 YIDALPQLINPKTGRIHTSFNQTV-TATGRLSSSNPNLQNIP------------------ 693

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G     AD + IE R++A ++ +   I AF +G DI+
Sbjct: 694 ------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDIH 747

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I +V+ + R   K                      G+ +   ++     
Sbjct: 748 AATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 789

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V        +   
Sbjct: 790 --------------------------MNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAR 823

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+    + +     +   
Sbjct: 824 EHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAERN-- 855

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          ++L VHDE+    P      
Sbjct: 856 -------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 908

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M K   +   +PLKA+      +
Sbjct: 909 VEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 191/695 (27%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI +       T + +          + + 
Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170
               L       +   GK                     +     QL    Y +   EA 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R     D E  + L+ + +   G  ID  L+      IA    +L+    +L  G
Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           L+L     S 
Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+   GR+        A  TGR +      QN+P              
Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IAS G ++V AD + IE R++A I+G+   ++AFA G
Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F     +V+ +QR I KV+                    G+        
Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      A    +   A +L    +  ++ GV Q  +D  
Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTR 795

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 796 TAAKDKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M               +++ VHDE+V E PD 
Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDD 880

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  +M         +PL AE      +
Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            ID ET S  PL          QA +   +   +           +            + 
Sbjct: 340 SIDTETTSLVPL----------QAQLVGISLCCEPGVAAYIPVAHRYADAPVQLSRELVL 389

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
             +  +L D     V  N  ++  +F    GI +       T + +          + + 
Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIA-HDTMLESYVFESHRSHDMDSL 447

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L  +    +   GK                               EY   D + T 
Sbjct: 448 ALRHLGRTTITFQEVCGKGASQ---------------ICFDQVDIARATEYAAEDADITL 492

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + ++P               E    ++ Q I   G  ID  ++      + +   ++
Sbjct: 493 QLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLEI 552

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L      +      +    F    +         +  T + +L+          
Sbjct: 553 ETSAYELAGQPF-NLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDEEVLAKLAEDYPLPK 611

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L   + S       + L + +    GR+        A  TGR +      QN+P    
Sbjct: 612 VLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVA-VTGRLASNEPNLQNIP---- 666

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G  +V AD + IE R++A ++G+
Sbjct: 667 --------------------IRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGD 706

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AFA+G DI+  T A+ F+T    V+ EQR   KV+   L Y              
Sbjct: 707 ANMLRAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMS-----AFGLAG 761

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L +++ +        F  +   +      + +       + + G    L          
Sbjct: 762 NLGIERGAAQSYIDKYFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWL---------P 812

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                                
Sbjct: 813 EINSPNGPRRQGAERAAINAPMQGT----------------------------------- 837

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                               KL+   VQ                    +V+ VHDE+V E
Sbjct: 838 ---------------AADLIKLSMVAVQG---------WLETDGLKSLMVMQVHDELVLE 873

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P      V   L +LM         +PL AE    K +
Sbjct: 874 VPQEELELVRVKLPALMAGVAE--LKVPLTAEVGIGKNW 910


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GI++    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F TP++KV+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  +      L G    L     R  
Sbjct: 777 ARQLSIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + +                  
Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 191/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   + + +           +            + 
Sbjct: 345 SFDTETTSLDPMV----------AQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVL 394

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +      I +       T + +          + + 
Sbjct: 395 AKLKPWLESAERRKVGQHLKYDAQVLANYE-IALNGIE-HDTLLESYVLESHRTHDMDSL 452

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                           +    Y   D + T 
Sbjct: 453 ALRHLGVKTIKYEEVAGKGAQQIG---------------FDEVPLETAAAYAAEDADITL 497

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   + P             + E  + L+ + +   G  ID   + K    IA    +L
Sbjct: 498 QLHLAMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIEL 557

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           + +  +L  G   +      +    F    +         +  T + +L           
Sbjct: 558 EREAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 616

Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 617 LLLEHRGLSKLKSTYTDKLPRMINARTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 671

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+ +
Sbjct: 672 --------------------VRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISED 711

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AF+ GEDI+  T A+ F     +VS +QR I KV+                    
Sbjct: 712 ESLLRAFSQGEDIHRATAAEVFGVTPLEVSNDQRRIAKVIN--------------FGLIY 757

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A +L    + A++ 
Sbjct: 758 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 787

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    +                                           RRL   ++ G
Sbjct: 788 GVANYMETTRAVAKDKGYVETVF--------------------------GRRLWLPEING 821

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                  A     R            +Q  + D++   M          K    +++ VH
Sbjct: 822 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDGWLERDKLRSRMIMQVH 872

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P+     V   L  +M+        +PL AE      +
Sbjct: 873 DELVLEVPEDELALVREKLPEMMSGVAK--LKVPLVAEVGAGDNW 915


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 191/694 (27%), Gaps = 149/694 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58
            L +D ET    P+           A +   +++  +                 +  +  
Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 419

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
              +++  + V  N  ++ ++ +   GI+I   R   T V        L  ++       
Sbjct: 420 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIRG-RLFDTMVAHYVLQPELRHNMDYLAEIY 477

Query: 116 LNFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           L++     +   G   K           D   Y C  A+     +   E   +  +A   
Sbjct: 478 LHYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE-- 535

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              +L    + E  L  +   I   G R+D + + +  E      + ++++I  L     
Sbjct: 536 ---KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEF 590

Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287
            +      +   LF    I +    ++     T + +L            IL        
Sbjct: 591 -NIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKKL 649

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L + ++   GR+  +      + TGR S      QN+P               
Sbjct: 650 LSTYIDALPQLINPRTGRIHTSFNQTV-TATGRLSSSNPNLQNIP--------------- 693

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   I  +G     AD + IE R++A ++ +   I AF +G 
Sbjct: 694 ---------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGY 744

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T AK +   I +V+ + R   K                      G+ +   ++  
Sbjct: 745 DIHAATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER- 789

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     + +   +   +  V        +
Sbjct: 790 -----------------------------MNVDRKEAKELIDGYFETYPQVKAYMDKSIQ 820

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+    D+    + +     +
Sbjct: 821 VAREHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAER 854

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
                          +Q  + DI+   M    +          ++L VHDE+    P   
Sbjct: 855 N---------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKE 905

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M K   +   +PLKA+      +
Sbjct: 906 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/703 (13%), Positives = 190/703 (27%), Gaps = 165/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57
             L +D ET S   +          +A +   ++A ++           +     + +  
Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                D  ++ V  N  ++  +  +  G+++       T +        L  ++      
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVAG-PMFDTMIAHYLLQPELRHNMDYMAEV 455

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L +     +   G +    +  +    +  Y               EY   D + T  L
Sbjct: 456 YLGYRTVHIEELIGPRGRNQKNMRDLSPTDIY---------------EYACEDADITLRL 500

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L P  D           E  L  +   +   G  +D + + +  E+  +    +++ 
Sbjct: 501 KNVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQH 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I D    ++     T + +L          D I
Sbjct: 561 IYELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEI 619

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           LN           ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 620 LNYRGLKKLLSTYVDALPKLINPRTGRIHTSFNQTV-TATGRLSSSDPNLQNIP------ 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C I   G     AD + IE R++A ++ ++ 
Sbjct: 673 ------------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDEN 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF  G DI+  T A+ ++  I +V+  +R   K                      G+
Sbjct: 715 MIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANF--------------GIIYGI 760

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A +  +       +   +      V
Sbjct: 761 ------------------------------TTYGLAQRMDISNGEARDLIDGYFLTFPRV 790

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   E                                       RR    D+    
Sbjct: 791 EAYMEQAKETARKQGYAETLFH--------------------------RRRYLPDINSHN 824

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           +   T      R            +Q    DI+   M    +          ++L VHDE
Sbjct: 825 A---TVRGFAERNAINAP------IQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDE 875

Query: 632 IVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M     +   +PL A+    K +
Sbjct: 876 LNFSVFPEEKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 199/703 (28%), Gaps = 161/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
               +D ET +   +           A +   ++A ++                   E++
Sbjct: 356 KLFALDTETNNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + L   L +  +  V  N  ++  +F +  GID+    +  T + +         ++
Sbjct: 406 TALALLKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 464 DDLAKRYLGHQTITFEEIAGKGKNQL---------------TFNQIPLEKAAEYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L               + E  L  +   +  RG  ID D +      IA   
Sbjct: 509 VTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRL 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
            +L+E    L      +   T  L+  LF   G+         +  T + +L     +  
Sbjct: 569 SELEEQAYVLAGQPF-NLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 628 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 686 -----------------------IRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AF  G+DI+ +T A+ F   +D+V+ EQR   K +   L Y           
Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMS-----AFG 777

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          F+ +   ++    ++++       + L G    L       
Sbjct: 778 LSRQLGIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYL------- 830

Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +        +      +      +A  +     + + +                  
Sbjct: 831 --PDINSSNGMRRKAAERVAINAPMQGTAADIIKRAMIQLDQ------------------ 870

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                   KL  +       DI    M           + VHDE
Sbjct: 871 ------------------------KLQNDP------DI---AMI----------MQVHDE 887

Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           +V E           L    M         +PL  +  +   +
Sbjct: 888 LVFEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 203/709 (28%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRDWV 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 411 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    Q   +Y   D + 
Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 514 TLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+    PI++VS EQR   K +                  
Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 836 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887

Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V      +       +  LM      A  +PL AE      +
Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 203/709 (28%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDREWV 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 411 ITQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    Q   +Y   D + 
Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 514 TLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+    PI++VS EQR   K +                  
Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 836 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887

Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V      +       +  LM      A  +PL AE      +
Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/705 (15%), Positives = 192/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTSLDPML----------ARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +      I +       T + +          + + 
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVVESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALTQAAEYAAEDADITL 495

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID   +      IA    +L
Sbjct: 496 QLHHALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIEL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EAQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+                    
Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 755

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A +L    + A++ 
Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q  +D                                          RRL   ++ G
Sbjct: 786 GVAQYMEDTRSVAKEKGYVETVF--------------------------GRRLWLPEING 819

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                  A     R            +Q  + D++   M          K    +++ VH
Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDKLASRMIMQVH 870

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  +M         +PL AE      +
Sbjct: 871 DELVLEVPDGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 196/691 (28%), Gaps = 142/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+          +A +   +++  +           +        +  
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +         G     +  K   D PP D  R     A          + E  ++  +
Sbjct: 488 LRYRTIHIDELIGSR--GKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAE 545

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E  L  +   I   G RID + + +  E      ++++++I  L +G   + 
Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNI 603

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 604 ASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYRGLKKLLST 663

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 664 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 704

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++ +   I AF +G DI+
Sbjct: 705 ------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDAFLSGYDIH 758

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I +V+ + R   K                      G+ +   ++     
Sbjct: 759 AATAAKIYKVDISEVTTDMRRKAKTANF--------------GIIYGISVFGLAER---- 800

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  + +      +   
Sbjct: 801 --------------------------MNVSRQEAKELIDGYFETYPQIKEYMDKSIQVAR 834

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+    + +        R
Sbjct: 835 ENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---ER 865

Query: 590 ERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M        +      ++L VHDE+    P+     
Sbjct: 866 NAINAP------IQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKEI 919

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +    M +       +PLKA+    K +
Sbjct: 920 IQKIVIEEMERAYRML--VPLKADFGWGKNW 948


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 201/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                        + +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE  + V  N  F++ +  +   I++    +  T + +           + 
Sbjct: 405 LAQLKPLLEDEKALKVGQNLKFDQSMLARY-DIELRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++KV+ +QR   K +   L Y            
Sbjct: 722 QDQGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + +                  
Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 93/702 (13%), Positives = 192/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDLL 58
              +D ET    P+           A +   ++++ +           +     +   L 
Sbjct: 383 FFSLDTETTGTDPIT----------AELVGMSFSFAENQAFYVPVPANREEALAIVKKLK 432

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
             + +E  + +  N  ++ ++     G+++       T +        L   +       
Sbjct: 433 PIIENEKTLKIGQNIKYDMLVLGNY-GVEVRG-PMFDTMIAHYVLQPELHHGMDYLAEVY 490

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K    +  +    +  Y                Y   D + T +L 
Sbjct: 491 LKYETIKIEELIGPKGKNQKNMRDLSPTSVYK---------------YACEDADVTLKLK 535

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           K L                E  L  +   +   G RID + + +  +      K+L+E++
Sbjct: 536 KVLEKELIENNVNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEV 595

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279
            +L      +      +   LF    I      ++     T + +L            IL
Sbjct: 596 HQLAGMEF-NIASPKQVGEVLFDRLKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKIL 654

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L   ++   G +  +      + TGR S      QN+P       
Sbjct: 655 EHRGLKKLLGTYIDALPLLINPKTGHIHTSFNQTV-TATGRLSSSNPNLQNIP------- 706

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   I   G +   AD + IE R++A ++G+   
Sbjct: 707 -----------------IRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHM 749

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF  G+DI+  T AK +   ++ V++EQR+  K                      G+ 
Sbjct: 750 IEAFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANF--------------GIIYGIS 795

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +   ++ +                                     + +   +   +  V 
Sbjct: 796 VFGLAERLNIE------------------------------RKEAKELIDGYFENYPHVK 825

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +                                        I     R+    D+    +
Sbjct: 826 EYMDQSIRLAQEKGY--------------------------IETIFKRKRYLPDINSRNA 859

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +     +               +Q  + DI+   M    K          ++L VHDE+
Sbjct: 860 VVRGYAERN---------AINAPIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDEL 910

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +  S M     +   +PL+A+    K +
Sbjct: 911 NFSVVPEEKEKVQHIVISEMEAA--YKMKVPLQADCDWGKNW 950


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 200/703 (28%), Gaps = 161/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
               +D ET +   +           A +   ++A ++                   E++
Sbjct: 356 KLFALDTETDNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + L   L + T+  V  N  ++  +F +  GID+    +  T + +         ++
Sbjct: 406 TALTLLKPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 464 DDLAKRYLGHQTISFEEIAGKGKNQL---------------TFNQIQLEQAAEYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L               + E  L  +   +  RG  ID D +      IA   
Sbjct: 509 VTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRL 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
            +L+E    L      +   T  L+  LF   G+         +  T + +L     +  
Sbjct: 569 SELEEQAYVLAGQPF-NLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L + V+   GR+  +      + TGR S      QN+P 
Sbjct: 628 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  +V AD + IE R++A +
Sbjct: 686 -----------------------IRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AF  G+DI+ +T A+ F   +D+V+ EQR   K +   L Y           
Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMS-----AFG 777

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          F+ +   ++    ++++       + L G    L       
Sbjct: 778 LSRQLSIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYL------- 830

Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +        +      +      +A  +     + + +                  
Sbjct: 831 --PDINSSNGMRRKAAERVAINAPMQGTAADIIKRAMIQLDQ------------------ 870

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                   KL  +       DI    M           + VHDE
Sbjct: 871 ------------------------KLQNDP------DI---AMI----------MQVHDE 887

Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           +V E           L    M         +PL  +  +   +
Sbjct: 888 LVFEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 196/701 (27%), Gaps = 161/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQS--AMPSDLLQ 59
              D ET    PL           A +   A++                   A+  ++  
Sbjct: 397 FCFDTETDGLDPL----------SARMLGIAFSIAPHEGCYFHIPEERDEHLAVLKEVKT 446

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
           +L       + HN  F+  +F    GI++    +  T ++           +       L
Sbjct: 447 FLSTSKAEKIGHNLKFDLRVFLAH-GIEVAG-PFFDTMLVHALVEPDQRHGMDYLSERYL 504

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +S        G+                   ++      +   EY   D + T +L ++
Sbjct: 505 GYSPVSITTLIGEKK------------GATPQKSMAEVPLEPLAEYAAEDADVTLQLSQK 552

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P  +           E  L  +   +   G ++D+  + +  + +  +   L E I  
Sbjct: 553 LRPELERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVLRERIQG 612

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
             D    +      L   LF    + +    +      T +  L          D IL  
Sbjct: 613 YVDWPF-NLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPIIDDILAY 671

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +      ++ L  AV+    R+  T     A  TGR +      QN+P         
Sbjct: 672 RECTKLKSTYVDALPAAVNPLTHRVHTTFHQLMA-ATGRMASTDPNLQNIP--------- 721

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +    G  L+ AD + IE RV+A ++ +   +
Sbjct: 722 ---------------IRTDQGREIRKAFVPEKEGWVLMSADYSQIELRVMAELSADPAMM 766

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G DI+  T AK +   +D+V  E R   K++   + Y               L  
Sbjct: 767 EAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYG-----ISAFGLSQRLGN 821

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                                    T    + + +  ++ GV +
Sbjct: 822 T--------------------------------------SRTEAAQIIENYFKQYPGVKR 843

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +D+                                         RR    D+      
Sbjct: 844 YMEDIVTQARTQGYVETLT--------------------------GRRRYLRDINSSNMT 877

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
           + +AT    R            +Q  + D++   M N  ++         ++L VHDE++
Sbjct: 878 VRSAT---ERVAMNAP------IQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELL 928

Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            E P      V  +    M +       +P+  E    K +
Sbjct: 929 FEVPLEEVDKVKPVIEQGMREALP--LKVPVLVEAGTGKTW 967


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/707 (15%), Positives = 199/707 (28%), Gaps = 161/707 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 404 VLDRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +        D 
Sbjct: 462 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDK 521

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 522 QLEM--------YEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAA 573

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T + +L           +IL  
Sbjct: 574 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKN 632

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  D R+  T     A  TGR +G     QN+P         
Sbjct: 633 RSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVA-ITGRLAGNNPNLQNIP--------- 682

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 683 ---------------IRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +                    G+   
Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIYGMGQY 773

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    +   + +     + A++ GV + 
Sbjct: 774 ------------------------------GLAKSLGIDNLSAKNFIDRYFARYPGVAEY 803

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E                                ++     RRL   D++   + +
Sbjct: 804 MQRARECA--------------------------AGQGYVETLFGRRLYLPDIRHTNANI 837

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------------NGYDIVLT 627
               ++  R            +Q  + D++   M + ++                 +++ 
Sbjct: 838 R---ARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQ 888

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+     V   L  +M         +PL AE      +
Sbjct: 889 VHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLAAEVGAGMNW 935


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 191/694 (27%), Gaps = 148/694 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+          +A +   +++  +           +        +L 
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENRAYYVPVPANRDEALKIVNELR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LNFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           L +         G   K         + D   Y C  A+              + E   +
Sbjct: 488 LQYQTIHIDELIGARGKNQKNMRDLPAEDVYRYACEDADV-----TLKLKNVLEKELKEQ 542

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             + L    + E  L  +   I   G RID + + +  E      ++++++I  L  G  
Sbjct: 543 SAEHLF--YEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALAGGET 600

Query: 233 RSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      +   LF    I             T + +L            IL        
Sbjct: 601 FNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILEYRGLKKL 660

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L + ++   GR+  +      + TGR S      QN+P               
Sbjct: 661 LSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP--------------- 704

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   I  +G +   AD + IE R++A ++ +   I AF +G 
Sbjct: 705 ---------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAFLSGY 755

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T AK +   I+ V+ + R   K                      G+ +   ++  
Sbjct: 756 DIHAATAAKIYKVDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER- 800

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     + +   +   +  V +      +
Sbjct: 801 -----------------------------MNVPRQEAKELIDGYFETYPQVKEYMDRSIQ 831

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+    D+    + +      
Sbjct: 832 VARENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA-- 863

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+   M        +      ++L VHDE+    P+  
Sbjct: 864 -ERNAINAP------IQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSVPEAE 916

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              +  +    M +       +PLKA+    K +
Sbjct: 917 KEIIQKIVIEEMERAYRML--VPLKADCGWGKNW 948


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 200/702 (28%), Gaps = 165/702 (23%)

Query: 21   VWAYAEQAVITLCAYAWDDE---------PVKLWDRTE------------------QSAM 53
                A +A +   + A  D                                         
Sbjct: 415  TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPGRET 474

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
             S L + L D +V+ V  N  +  ++ K+     I  + +  T +++           + 
Sbjct: 475  LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531

Query: 111  NACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166
            +     L  +    K   G     +         +  Y    A+  ++ W +        
Sbjct: 532  SLAERWLGHTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591

Query: 167  VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                  +++RL      ER L  +   + +RG  +D  ++ +L   +AQ    L+++I +
Sbjct: 592  GLT--RVYERL------ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYR 643

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDLILN 280
            L             L   LF   G+     ++     T   +L         L + ++  
Sbjct: 644  LAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            R   +       + L   V  + +   T     A+ TGR S      QN+P         
Sbjct: 703  RQ-LTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIP--------- 752

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                   +R+  +A+ G KLV AD + IE RVLA +A      +
Sbjct: 753  ---------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            AFA+G DI+  T ++ F  P+D +  E R   K +                    G+   
Sbjct: 798  AFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINF--------------GIIYGISAF 843

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              +  +                                  +      K +  +  G+   
Sbjct: 844  GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++                                          RR  Y D++     +
Sbjct: 874  MENTKAFARENGYVETIF--------------------------GRRAHYPDIRSSNPSM 907

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634
                    R            +Q  + DI+   M          K    ++L VHDE++ 
Sbjct: 908  RAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958

Query: 635  ETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
            E  D     ++  + S+M      A    +PLK +   A  +
Sbjct: 959  EVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/691 (14%), Positives = 194/691 (28%), Gaps = 142/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+          +A +   +++  +           +        +  
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++         G     +  K   D PP D  R     A          + E      +
Sbjct: 488 LHYQTIHIDELIG--AKGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAE 545

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E  L  +   I   G RID + + +  E      ++++++I  L  G   + 
Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNI 603

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 604 GSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYRGLKKLLST 663

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 664 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 704

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++ +   I AF +G DI+
Sbjct: 705 ------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAFLSGYDIH 758

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I+ V+ + R   K                      G+ +   ++     
Sbjct: 759 AATAAKIYKVDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 800

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V +      +   
Sbjct: 801 --------------------------MNVPRQEAKELIDGYFETYPQVKEYMDRSIQVAR 834

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+    + +        R
Sbjct: 835 ENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---ER 865

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          ++L VHDE+    P+     
Sbjct: 866 NAINAP------IQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKEI 919

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +    M +       +PLKA+    K +
Sbjct: 920 IQKIVIEEMERAYRML--VPLKADFGWGKNW 948


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/728 (15%), Positives = 201/728 (27%), Gaps = 181/728 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L +D ET              A    +   + A                          
Sbjct: 369 FLAVDTETTGLN----------ASAVDLVGISMAIAPGQACYIPLRHGATNDSAVGSGVA 418

Query: 51  ---------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
                                    +++     D  V+ + HN  ++  +  +     I 
Sbjct: 419 VQGGLNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGIN 478

Query: 90  SKRWICTSVLARTNG----LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 T  L+           S+       L+++        GK               
Sbjct: 479 LAPVDDTMCLSYVLDGGRVERHSMDYLAGHWLDYTTIKFSDVCGKGAKQ----------- 527

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTI 194
                     A +   +Y   D + T  L+  L P              ER L  +   +
Sbjct: 528 ----IPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQM 583

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G  +D  ++ ++    A   + L +DI+ L      +      L   LF   G+   
Sbjct: 584 ENYGITVDRSILARMSNDFATRMEALAQDILALAGEDF-NIASPKQLGEILFDKMGLQGG 642

Query: 255 DMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
             ++     T   +L             +L+    +       + L E +    GR+  +
Sbjct: 643 KKAKTGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTS 702

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
               GAS TGR S      QN+P                                +R+  
Sbjct: 703 FSMVGAS-TGRLSSSDPNVQNIP------------------------IRTSEGRQIRTAF 737

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA+ G KL+  D + IE R++A +AGE   I+AF +G DI+  T ++ F  P+D++  E 
Sbjct: 738 IAAEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSET 797

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + Q        S FE++    ++   ++ +
Sbjct: 798 RRRAKAINFGIIYG-----ISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTE 852

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             E    + L G                                           +   R
Sbjct: 853 AREDGFVETLFGRRIH--------------------------------ITGMAGGSAAHR 880

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
               R   +  I                     +A   + R             QA   D
Sbjct: 881 GFAERQAINAPIQ-------------------GSAADIIKRAMIRIPPAL----QA--AD 915

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMT--KNPSWAKGLPLKA 665
           I             D++L VHDE++ E P      +V  +  +M     P     +PL A
Sbjct: 916 I-----------RADMLLQVHDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVA 964

Query: 666 EGYEAKRY 673
           E   A  +
Sbjct: 965 EAGIADSW 972


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 200/703 (28%), Gaps = 161/703 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   L           A +   ++A                          +
Sbjct: 351 FAFDTETDSLDTLT----------ANLVGVSFAISAGDAAYLPLGHDYLGAPEQLDREVV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108
            + L   L D  ++ +  N  F+R +  +  GI++    +  T + +             
Sbjct: 401 LAALKPLLEDSNLLKIGQNIKFDRGVLARY-GIELQGIAY-DTMLESYVLNSVAGMGRHD 458

Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN      +   GK                      +  A +    Y   D 
Sbjct: 459 MDSLAERHLNHKTTTFEEIAGKGKNQL---------------TFNQVAVEQAAMYAAEDA 503

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + + P  +            E  L ++   +   G  ID +++ +  + I   
Sbjct: 504 DVTLLLHQAMWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITAR 563

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
             +L+++  +L  G + +      L+  LF    + +V  +      T + +L     T 
Sbjct: 564 LDELEKEAHELA-GEVFNLASPKQLQTILFEKLQLPVVKKTPNGAPSTNEEVLEELADTH 622

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +IL     +       + L + V     R+  +      + TGR S      QN+P
Sbjct: 623 ALPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAV-TATGRLSSRDPNLQNIP 681

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G +++ AD + IE R++A 
Sbjct: 682 ------------------------VRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMAH 717

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   +KAFA G+DI+  T A+ F  P+++V+ EQR   K +   L Y          
Sbjct: 718 LSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMS-----AF 772

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L + +          FE +    ++    + Q  E    + L G    L     R
Sbjct: 773 GLSRQLGIPRGEAQRYMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSR 832

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              +      K           +G +    + A +        +                
Sbjct: 833 NAMRR-----KAAEREAINAPMQGTAADIIKKAMIAVDDWIVSEEPK------------- 874

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                        I+Q                    +V  VH  
Sbjct: 875 --------------------------VRMIMQ-------------VHDE---LVFEVH-- 890

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++        +  LM K+      +PLK +      +
Sbjct: 891 ------ESELEYAEQKIRELMEKSM--VLDVPLKVDVGIGDNW 925


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 191/695 (27%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI +       T + +          + + 
Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170
               L       +   GK                     +     QL    Y +   EA 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R     D E  + L+ + +   G  ID  L+      IA    +L+    +L  G
Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           L+L     S 
Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+   GR+        A  TGR +      QN+P              
Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IAS G ++V AD + IE R++A I+G+   ++AFA G
Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F     +V+ +QR I KV+                    G+        
Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      A    +   A +L    +  ++ GV Q  +D  
Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTR 795

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 796 TTAKEKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M               +++ VHDE+V E PD 
Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDD 880

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  +M         +PL AE      +
Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F   ++KV+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + +                  
Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/708 (14%), Positives = 187/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     ++ 
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQ 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  G+ +       T + +           +
Sbjct: 406 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E V    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M N             ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIANHAQRAKMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 884 QVHDELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 929


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F   ++KV+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + +                  
Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/703 (13%), Positives = 190/703 (27%), Gaps = 165/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57
             L +D ET S   +          +A +   ++A ++           +     + +  
Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                D  ++ V  N  ++  +  +  G+++       T +        L  ++      
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVAG-PMFDTMIAHYLLQPELRHNMDYMAEV 455

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L +     +   G +    +  +    +  Y               EY   D + T  L
Sbjct: 456 YLGYRTVHIEELIGPRGRNQKNMRDLSPTDIY---------------EYACEDADITLRL 500

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L P  D           E  L  +   +   G  +D + + +  E+  +    +++ 
Sbjct: 501 KNVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQH 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I D    ++     T + +L          D I
Sbjct: 561 IYELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEI 619

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           LN           ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 620 LNYRGLKKLLSTYVDALPKLINPRTGRIHTSFNQTV-TATGRLSSSDPNLQNIP------ 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C I   G     AD + IE R++A ++ ++ 
Sbjct: 673 ------------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDEN 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF  G DI+  T A+ ++  I +V+  +R   K                      G+
Sbjct: 715 MIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANF--------------GIIYGI 760

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A +  +       +   +      V
Sbjct: 761 ------------------------------TTYGLAQRMDISNGEARDLIDGYFLTFPRV 790

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   E                                       RR    D+    
Sbjct: 791 EAYMEQAKETARKQGYAETLFH--------------------------RRRYLPDINSHN 824

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           +   T      R            +Q    DI+   M    +          ++L VHDE
Sbjct: 825 A---TVRGFAERNAINAP------IQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDE 875

Query: 632 IVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M     +   +PL A+    K +
Sbjct: 876 LNFSVFPEEKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/710 (14%), Positives = 201/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +   +           +            
Sbjct: 347 YVAVDTETTGLNDMT----------ADLVGVSLCVEPGKACYIPLIHKAASSDDLFGSDD 396

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L DE+++ +  N  ++  +F +   + I       T +++  
Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQ---VGITVAPIDDTMLMSYA 453

Query: 103 NG---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ I        D+ PY    A+  ++ 
Sbjct: 454 MHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDAVPYAAEDADVTLRL 513

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ F     R       +++ L      ER +  +   +   G ++D D + ++    +Q
Sbjct: 514 WQQFKPALHRAQVT--RVYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQ 565

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+++I  L      +      L   LF   G+      +     T   +L      
Sbjct: 566 KMAALEDEIYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDLATE 624

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 IL+    S       + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 684 P------------------------IRSEEGRRIREAFVAEEGKTLVALDYSQIELRILA 719

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA       AF +G+DI+  T ++ F+ P+D+++ E R   K +               
Sbjct: 720 HIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN-------------- 765

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++  +  +     +
Sbjct: 766 FGVIYGISGF------------------------------GLARNLRIPRSEAQGFIDRY 795

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     D                                    +     RR+  
Sbjct: 796 FERFPGIRTYMDDTKAFAKEHGY--------------------------VETLFGRRIHT 829

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
            ++               R            +Q  + D++   M             ++L
Sbjct: 830 PNI----GAKGPQAGFAARAAINAP------IQGTAADVIRRAMIRMPAAIVDLPAKMLL 879

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E       ++     S+M     P     + L  +  E   +
Sbjct: 880 QVHDELLFEVDQGSQGALIDAARSVMESAADPVVHLDVKLTVDAGEGPNW 929


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 196/691 (28%), Gaps = 142/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            L ID ET   +P+          +A +   +++  +           +        +  
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  M V  N  ++ I+ +   G+ +  K    T +        L  ++       
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +         G     +  K   D PP D  R     A          + E  ++  +
Sbjct: 488 LRYRTIHIDELIGSR--GKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAE 545

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E  L  +   I   G RID + + +  E      ++++++I  L +G   + 
Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNI 603

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 604 ASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYRGLKKLLST 663

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 664 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 704

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G +   AD + IE R++A ++ +   I AF +G DI+
Sbjct: 705 ------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDAFLSGYDIH 758

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I +V+ + R   K                      G+ +   ++     
Sbjct: 759 AATAAKIYKVDISEVTTDMRRKAKTANF--------------GIIYGISVFGLAER---- 800

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  + +      +   
Sbjct: 801 --------------------------MNVSRQEAKELIDGYFETYPQIKEYMDKSIQVAR 834

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+    + +        R
Sbjct: 835 ENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---ER 865

Query: 590 ERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M        +      ++L VHDE+    P+     
Sbjct: 866 NAINAP------IQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKEI 919

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +    M +       +PLKA+    K +
Sbjct: 920 IQKIVIEEMERAYRML--VPLKADFGWGKNW 948


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 194/700 (27%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A ++                       +
Sbjct: 346 FAFDTETDSLDYMV----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWV 395

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     +  N  ++  +  +  GI++   ++  T + +           + 
Sbjct: 396 LAQLKPLLEDPNQAKIGQNLKYDASVIARY-GIEMQGIKY-DTMLESYVYNSVVGRHDMD 453

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +    +  G Y   D + 
Sbjct: 454 SLALRYLEHKNISFEEIAGKGKGQL---------------TFNQIDLEQAGPYAAEDADI 498

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L P             D E  L  +   +   G  ID   +    + IAQ   
Sbjct: 499 TLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDSMKLSAQSQEIAQRLD 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   ++ D    +      L+  LF   G+         +  T + +L    +    
Sbjct: 559 ELEKRAFEIADQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL     +       + L + V+   GR+  +      + TGR S      QN+P  
Sbjct: 618 PKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G K++  D + IE R++A ++
Sbjct: 675 ----------------------VRNDEGRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLS 712

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G+DI+  T A+    P+D+VS EQR   K +   L Y            
Sbjct: 713 GDKALLDAFCHGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMS-----AFGL 767

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + FE +     +    +    E    + L G    L     R  
Sbjct: 768 AKQLDMGRGEAQEYMNTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNG 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A V        +        S R  +   V
Sbjct: 828 LRR-----KAAERAAINAPMQGTAADIIKRAMVLVDEWIGQQE-------SGRVRLLMQV 875

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             +  +                                       ++  + V        
Sbjct: 876 HDELVFE------------------------------------VQESEIESVAQ------ 893

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                        + +LM         +PL A+    + +
Sbjct: 894 ------------EIKTLMESAAQ--LDVPLIADIGYGENW 919


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 202/702 (28%), Gaps = 165/702 (23%)

Query: 21   VWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS------------------AM 53
                A +A +   + A  D                   +S                    
Sbjct: 415  TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVREA 474

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
             S L + L D +V+ V  N  +  ++ K+     I  + +  T +++           + 
Sbjct: 475  LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531

Query: 111  NACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166
            +     L  +    K   G     +         +  Y    A+  ++ W +        
Sbjct: 532  SLAERWLGHTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591

Query: 167  VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                  +++RL      ER L  +   + +RG  +D  ++ +L   +AQ    L+++I +
Sbjct: 592  GLT--RVYERL------ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYR 643

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDLILN 280
            L             L   LF   G+     ++     T   +L         L + ++  
Sbjct: 644  LAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            R   +       + L   V  + +   T     A+ TGR S      QN+P         
Sbjct: 703  RQ-LTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIP--------- 752

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                   +R+  +A+ G KLV AD + IE RVLA +A      +
Sbjct: 753  ---------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            AFA+G DI+  T ++ F  P+D +  E R   K +                    G+   
Sbjct: 798  AFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINF--------------GIIYGISAF 843

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              +  +                                  +      K +  +  G+   
Sbjct: 844  GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++                                          RR  Y D++     +
Sbjct: 874  MENTKAFARENGYVETIF--------------------------GRRAHYPDIRSSNPSM 907

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634
                    R            +Q  + DI+   M          K    ++L VHDE++ 
Sbjct: 908  RAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958

Query: 635  ETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
            E  D     ++  + S+M      A    +PLK +   A  +
Sbjct: 959  EVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 93/691 (13%), Positives = 193/691 (27%), Gaps = 143/691 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58
            L +D ET    P+           A +   +++  +          +      +  +  
Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAERKEAIKIVREFE 419

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
              ++E  + V  N  ++ ++ +   GI++  K    T V        L  ++       
Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGK-LFDTMVAHYVLQPELRHNMDYLAEIY 477

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++     +   G     +  K   D  P +        A          + E  +   +
Sbjct: 478 LHYQTIHIEELIG--PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAE 535

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L    + E  L  +   I   G R+D + + +  E      + ++++I  L +G   + 
Sbjct: 536 KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEF-NI 592

Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                +   LF    I +    ++     T + +L            IL           
Sbjct: 593 ASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLST 652

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +      + TGR S      QN+P                  
Sbjct: 653 YIDALPQLINPKTGRIHTSFNQTV-TATGRLSSSNPNLQNIP------------------ 693

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I  +G     AD + IE R++A ++ +   I AF +G DI+
Sbjct: 694 ------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDIH 747

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T AK +   I +V+ + R   K                      G+ +   ++     
Sbjct: 748 AATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 789

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +     + +   +   +  V        +   
Sbjct: 790 --------------------------MNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAR 823

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R+    D+    + +     +   
Sbjct: 824 EHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAERN-- 855

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          ++L VHDE+    P      
Sbjct: 856 -------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 908

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M K   +   +PLKA+      +
Sbjct: 909 VEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 189/696 (27%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57
             L +D ET S            A +A +   +++              +     + +  
Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E ++ V  N  ++  +  +  GI++       T +        L  ++      
Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY-GIELKG-NLFDTMIAHYLLQPELRHNMDYMAEV 455

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +     +   G        KG  +                   EY   D + T +L 
Sbjct: 456 YLRYQTVHIEELIGPR-----GKGQKNMRDLAPND---------IYEYACEDADITLQLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G RID   + ++ E   +    L+  I
Sbjct: 502 NILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +L  G   +      +   LF    I +    ++     T +  L           LIL
Sbjct: 562 HQLA-GESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQFVTSEEELQKYATGNEIVTLIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 DYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTV-TATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G     +R C I  +G     AD + IE RV+A ++G+   
Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF  G DI+  T AK +   +  V++++R   K     + Y               L 
Sbjct: 716 IEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLG 770

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           + +          F  + Q +S+    +D   E    +              R     + 
Sbjct: 771 IDRGEAKQLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFFHR---------RRYLPDIN 821

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +                                                +     
Sbjct: 822 SQNATVRGFAERNA----------------------------------------INAPIQ 841

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                  ++   R Y     EN +Q                    ++L VHDE+      
Sbjct: 842 GSAADIIKVAMIRIYERFKREN-IQ------------------SKMILQVHDELNFSVLP 882

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    V  +    M     +   +PL A+      +
Sbjct: 883 SEKEQVERIVLEEMQNA--YQLKVPLVADAGWGHNW 916


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/694 (15%), Positives = 192/694 (27%), Gaps = 144/694 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S  PL           A I   + A                          + 
Sbjct: 344 ALDTETTSLDPLA----------ARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVL 393

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SS 108
           + L  +L       +  +  +++ +     GI +   R   T + +              
Sbjct: 394 ARLKSWLESPGHAKIGQHLKYDQHVLANH-GIALAGVR-HDTLLQSYVLESGKDGVRGHD 451

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           L       L  +    +   GK      F + +I            +        Y +  
Sbjct: 452 LGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQAAEYAAEDADLCQRLHAVLYPQIV 511

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +A           ++ E  +  +   +  +G  ID +L+ +    I +    L+     
Sbjct: 512 ADAGLA-----RVYAEIEIPVRDILFRMERQGVLIDGELLTRQSHEIGKRLLDLEARAHA 566

Query: 227 LTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRL 282
                  +      L   LF   G+         +  T + +LS   +      ++L   
Sbjct: 567 AAGQPF-NVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEVLSELALDYPLPKILLESR 625

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +       + L + V++  GR+  +     A  TGR +      QN+P          
Sbjct: 626 QLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVA-VTGRLASSDPNLQNIP---------- 674

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R+  IA  G  LV AD + IE R++A ++ +   ++A
Sbjct: 675 --------------VRTAEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEA 720

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           FA GED++  T A+ F      V  +QR + KV+   L Y               LDL++
Sbjct: 721 FAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMS-----AFGLARELDLER 775

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            +        F  +     +    ++        + + G    L           +    
Sbjct: 776 GAAQAYIERYFARYPGVARYMATTREAARTQGYVETVFGRRLWL---------PEIRSSQ 826

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
               +G                                                    +N
Sbjct: 827 AGRRQGAERA-----------------------------------------------AIN 839

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
                         K     VQ            +A +    +++ VHDE+V E PD   
Sbjct: 840 APMQG---SAADLIKSAMIAVQG---------WLDAERLQTRLLMQVHDELVLEVPDDEL 887

Query: 642 FSVG-TLCSLMTKNPSWA-KGLPLKAEGYEAKRY 673
             V   L  LMT    +A   +PL  +      +
Sbjct: 888 ARVRGELPRLMT---DFASLRVPLVVDVGVGANW 918


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/727 (14%), Positives = 199/727 (27%), Gaps = 189/727 (25%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQ---- 50
            +  D ET S            A QA +   + A  D                   +    
Sbjct: 418  VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467

Query: 51   --------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                              + L   L DE+++ VA N  ++ +L K+     I ++ +  T
Sbjct: 468  DLLGGGLAENQIPMGDALARLKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDT 524

Query: 97   SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             +++           +       L  +    K   G                        
Sbjct: 525  MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 569

Query: 153  VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
            +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 570  LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 629

Query: 203  LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
              ++ +L   +AQ   +L+++I  +  G   +      L   LF   G+     ++    
Sbjct: 630  RQILSRLSGELAQSAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLSGGSKTKTGQW 688

Query: 259  GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L             I++    +       + L   V  + +   T     ++ T
Sbjct: 689  STSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 748

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR S      QN+P                                +R+  I++ G KL+
Sbjct: 749  GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 784

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 785  SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 844

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                              G+     +  +                               
Sbjct: 845  --------------GIIYGISAFGLANQLSIE---------------------------- 862

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               +      K +  +  G+    +                                   
Sbjct: 863  --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 901

Query: 558  VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                    RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 902  -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 945

Query: 618  TKN--------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAE 666
                          ++L VHDE++ E  D         + S+M     P+    +PL+ +
Sbjct: 946  EPALVEVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVD 1005

Query: 667  GYEAKRY 673
               A  +
Sbjct: 1006 ARAATNW 1012


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/721 (15%), Positives = 197/721 (27%), Gaps = 171/721 (23%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ----------- 50
            + +D ET S  P            A +     AW + P          +           
Sbjct: 418  VALDTETTSLNPFR----------AELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLL 467

Query: 51   ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
                       + + L  +L          N+ ++R++  +  G+ +     + T +   
Sbjct: 468  SPPPAQLPLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRH-GLPLEGV-VMDTLLADY 525

Query: 102  T--NGLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                     L+        F          K                           + 
Sbjct: 526  LRDANAKHGLELLAQRNFGFLPTSYSELVPKG------------------ADFSAVPIEQ 567

Query: 159  FGEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLV 206
               YC  DV  TR L   L    +             E  L  +   +   G RID   +
Sbjct: 568  AALYCGMDVHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYL 627

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTL 261
             +L   + Q  ++L+ D          +      L   LF   G+D            T 
Sbjct: 628  AELSSELGQTLQRLEADAKAAAGTDF-NLASPKQLGELLFDTLGLDRKKSRKTKTGWSTD 686

Query: 262  KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             ++L           L+L     S      ++ L   +    GR+         + TGR 
Sbjct: 687  AAVLEKLEDAHPVVSLVLEHRTLSKLKSTYVDALPALMEPETGRVHTDFNQAV-TATGRL 745

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
            S      QN+P                             S  +R   +   G +L+ AD
Sbjct: 746  SSSNPNLQNIP------------------------IRTEFSRRIRKAFLPEAGWQLISAD 781

Query: 381  LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
             + IE R+LA ++GE+  ++A+  G+D++  T         D+VS ++R +GK +   + 
Sbjct: 782  YSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVI 839

Query: 441  YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
            Y  GA+ F          + Q       +   + + +  +     +         + ++G
Sbjct: 840  YGMGAQRF-----ARETGVSQTQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILG 894

Query: 501  TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                                                            L     K  + I
Sbjct: 895  RRRPFAFD-------------------------------------PSGLGRHLGKDPLEI 917

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619
             L  +RR                 +Q +R            +Q  S DI+   M      
Sbjct: 918  DLDIARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQ 958

Query: 620  -----NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                     ++L VHDE+V E       +V TL    M +       +PL  E      +
Sbjct: 959  LAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE--LSVPLLVETGVGPNW 1016

Query: 674  R 674
             
Sbjct: 1017 M 1017


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 95/686 (13%), Positives = 195/686 (28%), Gaps = 131/686 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DL 57
             L ID ET S +P+          +A +   +++  +          E+        + 
Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPAEREEALKIVNEF 418

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +ET M V  N  ++ ++ +   G+++  +    T +        L  ++      
Sbjct: 419 RPLYENETSMKVGQNIKYDILVLQNY-GMEVKGE-LFDTMIAHYVLQPELRHNMDYLAEI 476

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L++         G     +  K   D PP +  +     A          + E  ++  
Sbjct: 477 YLHYQTIHIDELIGPR--GKNQKNMRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGV 534

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L    + E  L  +   +   G RID + + +  E      ++++++I +L      +
Sbjct: 535 EHLF--YEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKEIYELA-EETFN 591

Query: 235 SRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 +   LF    I      ++     T + +L            IL          
Sbjct: 592 IASPKQVGEILFDKLKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKILEYRGLKKLLG 651

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   ++   GR+  +      + TGR S      QN+P                 
Sbjct: 652 TYIDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP----------------- 693

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   I  +G +   AD + IE R++A ++ +   I AF +G DI
Sbjct: 694 -------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDI 746

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T AK +   I  V+ + R   K     + Y               +++ +       
Sbjct: 747 HAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYG-----ISIFGLAERMNVDRKEAKELI 801

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              FE + Q   +         E    + +      L           +      +    
Sbjct: 802 DGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFL---------PDINSRNATVRGYA 852

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                       +            ++ 
Sbjct: 853 ERNA----------------------------------------INAPIQGSAADIIKVA 872

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
             R Y    + N+                      ++L VHDE+    P+     V  + 
Sbjct: 873 MARIYKRFQSNNL-------------------KAKMILQVHDELNFSVPEAEKEFVQQIV 913

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
              M +   +   +PL+A+    K +
Sbjct: 914 IEEMERA--YRMHVPLRADCGWGKNW 937


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 137/694 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-------SAMPSDL 57
           D ET    P           QA +      W + P  +       +         +   L
Sbjct: 385 DTETTDLNP----------RQANLVGIGCCWGNNPTDIAYIPIGHKQGKQLKKEQVLDSL 434

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L       V  N+ F+R++FK    I++       T + +          L   C  
Sbjct: 435 RTILESSDYPKVFQNTKFDRLIFK-HQAINLDGV-VFDTMLASYVLHPEKSHKLSELCEQ 492

Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-- 171
                +      E G +          D           + A+  F        E  +  
Sbjct: 493 YLEGITCQNY-DELGISKKQ----TIADLDIEKVAEYCGMDAYGTFLLVEPLKNELQQVP 547

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L + L    + E+ L  +   + D G  ID + + KL + + QE   L++      +  
Sbjct: 548 TLEQLL---LEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYDAAEEK 604

Query: 232 IRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF    ++            T  + L          D IL     S 
Sbjct: 605 F-NLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSK 663

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L E V+    R+         + TGR S      QN+P              
Sbjct: 664 LKSTYIDALPELVNKKTKRIHTNFNQSV-TATGRLSSSNPNLQNIP-------------- 708

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I      LV AD + IE R+LA ++ E   + A+ N 
Sbjct: 709 ----------IRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQESVLLNAYQNA 758

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           ED++  T    F    ++++ ++R +GK +   + Y  G++ F   A      +      
Sbjct: 759 EDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGSQRFAREA-----GVSATEGK 811

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                  + + +   +   M+ +         ++G                         
Sbjct: 812 EFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGRRRY---------------FNFFDD 856

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
             +     +  +I   ++                                    +N   S
Sbjct: 857 NLYRFRGHDPQTIDLNKL-----------------------------------NINYNDS 881

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           QL+R            +Q  S DI+   M    +       +++L VHDE+V E P+  +
Sbjct: 882 QLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQVHDELVFEIPEKEW 935

Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             +   +   M         +PL  E +  K + 
Sbjct: 936 EELNHKIKETMENAVK--LTIPLVVEIHAGKNWM 967


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F +P++KV+ EQR   K +   L Y            
Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S    +  LM ++   A  +PLK +      +
Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/721 (15%), Positives = 201/721 (27%), Gaps = 186/721 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58
               D ET S  P+          QA +   + A                    L     
Sbjct: 380 FFAFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHFEGKEDLLKGGRI 429

Query: 59  --------------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                           L D  V+ +  N  ++ ++ K+    DI  + +  T +L+    
Sbjct: 430 ASQIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALD 486

Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
              L  ++ +     L       K     GK + +                       + 
Sbjct: 487 AGALTHNMDDLSERWLEHKPIAYKDLTHNGKKITSF-----------------AQVDLKQ 529

Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L++ L P              +R L  +   + +RG  +D  ++L+
Sbjct: 530 ATLYAAEDADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLR 589

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264
           L   +AQ    L+E+I K  D    +      L   LF   G+     ++     T    
Sbjct: 590 LSGELAQAALILEEEIYKQADEKF-NLASPKQLGDILFDKMGLPGGAKTKGGQWSTSAQT 648

Query: 265 LSHS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           L         L + +I  R   +       + L   +    GR+         + TGR S
Sbjct: 649 LEELSAEGHTLPRKIIEWRQ-LAKLKSTYADALPSYILPKTGRVHTNYSLA-ITSTGRLS 706

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R+  IA  G  L+ AD 
Sbjct: 707 SSEPNLQNIP------------------------VRTAEGRKIRTAFIAPKGHVLLSADY 742

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA IA      +AFA G DI+  T ++ F   I+ +  + R   K +      
Sbjct: 743 SQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINF---- 798

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A +  +   
Sbjct: 799 ----------GIIYGIS------------------------------AFGLANQLGISRQ 818

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 + +  +  G+    +                                       
Sbjct: 819 EAGRYIQLYFERFPGIKDYMEKTKSFARENGYVETIF----------------------- 855

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               RR+ Y ++K     + +      R            +Q  + DI+   M       
Sbjct: 856 ---GRRIHYPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMEDAL 903

Query: 621 -----GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672
                   ++L VHDE++ E P+     ++  +  +M     P  +  +PL+ +   A+ 
Sbjct: 904 KEENLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVMENATMPVLSLSVPLEVKVMTAQN 963

Query: 673 Y 673
           +
Sbjct: 964 W 964


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/709 (13%), Positives = 197/709 (27%), Gaps = 159/709 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49
               ID ET               + A +   ++A                         
Sbjct: 358 KHFVIDTETTDVN----------WQHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWI-CTSVLARTNGL- 105
           +  + + L   L++  +  +  +  ++  +      I++      W   T + +      
Sbjct: 408 REDVLAQLKPILQNPQIGKIGQHLKYDAHILANYH-INLINEPSNWAMDTMLASYVINAV 466

Query: 106 --PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                + +     L+      +   GK            +   D    +    +QLF  +
Sbjct: 467 ATRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKVPLTVASDYACEDADITYQLFELF 526

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
               ++A     K L    + E  +  +   +   G  ++   + +L     ++ + L+ 
Sbjct: 527 S-EKLKAEPNNAKLLH---ELEIPVAQILCQMEHDGILLNKAFLGELSARFDEKIQALET 582

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278
                  G   +      L   LF   GI     ++     T +++L+  +   +  + +
Sbjct: 583 VAFAQA-GETFNLASPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATIDHPLI--ETV 639

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L   + S       + L+    S+ R+  +      + TGR S      QN+P       
Sbjct: 640 LEHRSLSKLKSTYTDALANVADSNDRVHTSYHQA-LTTTGRLSSTEPNLQNIP------- 691

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R   IA  G+K++ AD + IE R++A  A +   
Sbjct: 692 -----------------IRTDTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVL 734

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF  G DI+  T A+      D V+ E+R   K +                    G+ 
Sbjct: 735 IRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVN--------------FGLLYGMS 780

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A +        +   K + A++  V 
Sbjct: 781 EF------------------------------GLAKQLGFTRQQAQDYIKLYFARYPTVR 810

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +                                     I     R+L   D++    
Sbjct: 811 AYMQATRTAAQNQGY--------------------------ITTILGRKLFTPDMQHPNR 844

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVS 634
            +  A     R             Q  + DI+   M    +        ++L VHDE+V 
Sbjct: 845 GVRQAA---ERAAINAPL------QGSAADIIKLAMIAVNEVLPTEHAKMLLQVHDELVF 895

Query: 635 ETPDTPYFSVGT-LCSLMTKNPS-------WAKG--LPLKAEGYEAKRY 673
           E  +    ++   + + M +  S       W     +PL  E      +
Sbjct: 896 EADEDKAEAIAELIKNAMQEVLSKTAKDKGWDVDFAVPLVVEVGIGDNW 944


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +            TE   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E  + V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   I   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     + Y               +++ +      
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q + +     D        + + G    L           +      +   
Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            + 
Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y    +ENI                      ++L VHDE+           V  +
Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M     +   +PL+A+      +
Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/690 (13%), Positives = 184/690 (26%), Gaps = 143/690 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59
              D ET S   L          +A +   A ++  +       T        +   L  
Sbjct: 376 FCFDTETTSLNAL----------EAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQP 425

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
                ++  V  N  ++ ++ KK     I       T +            +       L
Sbjct: 426 AFEKSSITKVGQNLKYDLLVLKKY-NFAIAG-PLFDTMLAHYLLEPEMRHGMDTLAEVYL 483

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++    +   GK    +      D             A   F  Y         +    
Sbjct: 484 NYTPVSIEQLIGKKGAKQGTM--RDVEIEAIKEYAAEDADITFQLYKFFSPLVKDQNLNP 541

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E  L  +   +   G +ID   + +   L+  E   ++++I +       +  
Sbjct: 542 LFN--EVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHAGVQF-NIS 598

Query: 237 QTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L   LF    +             T + +L+  +        IL+           
Sbjct: 599 SPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANILDYREFQKLKSTY 658

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L   +  DGR+  +     A  TGR S      QN+P                    
Sbjct: 659 VDALPLLLGKDGRVHTSFNQAVA-ATGRLSSTNPNLQNIP-------------------- 697

Query: 352 TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   +A +    ++ AD + IE R++A  + ++  + AF  G DI+ 
Sbjct: 698 ----IRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAFRKGVDIHS 753

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           TT +K F  PI+ V+ + R   K++                    G+     SQ +    
Sbjct: 754 TTASKVFKVPIEDVTADMRRKAKMVNF--------------GIIYGISAFGLSQRLS--- 796

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                      +       +  A+  +   V             
Sbjct: 797 ---------------------------IPRKEAAEIITAYFTEFPAVKAYMDACVNSARE 829

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
           V      +                           RR    D+      +        R 
Sbjct: 830 VEYVETIL--------------------------GRRRFLRDINSRNMTMRGFA---ERN 860

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + D++   M               +VL VHDE++ +        +
Sbjct: 861 AINAP------IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDAHKDEIDLL 914

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            T   + M +    A  +P++      + +
Sbjct: 915 KTQVEIFMKEAI--ALDVPMEVGMGIGENW 942


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/726 (14%), Positives = 198/726 (27%), Gaps = 184/726 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET S            A  A +   ++A ++          +           
Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402

Query: 54  ------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
                                    S L   L +  +  +  N  ++  +F    GI++ 
Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461

Query: 90  SKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
              +  T + + T       ++ +     L       +   GK                 
Sbjct: 462 GVAF-DTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL------------ 508

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIN 195
                         EY   D + T +L + L               + E  L  +   I 
Sbjct: 509 ---TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIE 565

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  ID   +L     I +  ++++  +         +   T  L+  LF   G+    
Sbjct: 566 RNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTF-NLASTKQLQEILFEKLGLPVLK 624

Query: 253 -LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                +  T + +L        L   L++     S       + L + ++   GR+  + 
Sbjct: 625 KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSY 684

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 685 NQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFV 719

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G K+V AD + IE R++A ++ ++  I AFA G+DI+  T A+ F   + +V+ EQR
Sbjct: 720 AREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQR 779

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   L Y        +      L + +          F+ +   +     +++  
Sbjct: 780 RSAKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVA 834

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            E    + L G    L           +      L +      +      +A  +  V  
Sbjct: 835 VEKGYVETLFGRRLYL---------PDIKSGNAILRKAAERVAINAPMQGTAADIIKVAM 885

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +    RD                                                  D
Sbjct: 886 IGIDNAIRDN-------------------------------------------------D 896

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
            +   M             VHDE+V E           L    M K  S    +PL AE 
Sbjct: 897 EIKMIM------------QVHDELVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAEV 942

Query: 668 YEAKRY 673
              + +
Sbjct: 943 GVGENW 948


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/713 (15%), Positives = 197/713 (27%), Gaps = 163/713 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ----------- 50
           + +D ET    P            A +      W +E   +                   
Sbjct: 387 VALDTETTDLNPFK----------AELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLP 436

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPS 107
              + + L  +L  E       N+ F+R++  +  G+ +     I T +           
Sbjct: 437 LETVVTALAPWLGSEDHPKALQNAKFDRLILMRH-GLALDGV-VIDTLLADYLRDAAAKH 494

Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L+        F         GK                           +   +YC  D
Sbjct: 495 GLELMAEREFGFQPTAYSDLVGKKQ------------------TFADVPLEAASQYCAMD 536

Query: 167 VEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           V  TR L   L                  E+ L  +   +   G RID+  + +L   + 
Sbjct: 537 VHVTRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMG 596

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSN 269
              ++L+ +  +       +      L   LF   G+D            T  ++L    
Sbjct: 597 TTLERLETEAKEAAGVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLG 655

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                  L+L     S      ++ L + V +  GR+         + TGR S      Q
Sbjct: 656 DDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 714

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                             S  +R   +   G  L+ AD + IE R+
Sbjct: 715 NIP------------------------VRTEYSRRIRKAFLPQAGWTLLSADYSQIELRI 750

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           L  ++GE+   +A+ +G+D++  T         D+VS ++R +GK +   + Y  GA+ F
Sbjct: 751 LTHLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGKTINFGVIYGMGAQRF 808

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                     + Q       +   + + +  +     +         + ++G        
Sbjct: 809 -----ARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFD 863

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                                                   L     K  + I L  +RR 
Sbjct: 864 R-------------------------------------NGLGRLLGKEPLEIDLDVARR- 885

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                           +Q +R            +Q  S DI+   M              
Sbjct: 886 ------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAALTSQGLPA 927

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            ++L VHDE+V E       +    +   M         +PL AE      + 
Sbjct: 928 RLLLQVHDELVLEVEPDALETTRDMVVRTMENAVK--LTVPLVAETGVGANWM 978


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/726 (14%), Positives = 198/726 (27%), Gaps = 184/726 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET S            A  A +   ++A ++          +           
Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402

Query: 54  ------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
                                    S L   L +  +  +  N  ++  +F    GI++ 
Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461

Query: 90  SKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
              +  T + + T       ++ +     L       +   GK                 
Sbjct: 462 GVAF-DTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL------------ 508

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIN 195
                         EY   D + T +L + L               + E  L  +   I 
Sbjct: 509 ---TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIE 565

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  ID   +L     I +  ++++  +         +   T  L+  LF   G+    
Sbjct: 566 RNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTF-NLASTKQLQEILFEKLGLPVLK 624

Query: 253 -LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                +  T + +L        L   L++     S       + L + ++   GR+  + 
Sbjct: 625 KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSY 684

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 685 NQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFV 719

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G K+V AD + IE R++A ++ ++  I AFA G+DI+  T A+ F   + +V+ EQR
Sbjct: 720 AREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQR 779

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   L Y        +      L + +          F+ +   +     +++  
Sbjct: 780 RSAKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVA 834

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            E    + L G    L           +      L +      +      +A  +  V  
Sbjct: 835 VEKGYVETLFGRRLYL---------PDIKSGNAILRKAAERVAINAPMQGTAADIIKVAM 885

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +    RD                                                  D
Sbjct: 886 IGIDNAIRDN-------------------------------------------------D 896

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
            +   M             VHDE+V E           L    M K  S    +PL AE 
Sbjct: 897 EIKMIM------------QVHDELVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAEV 942

Query: 668 YEAKRY 673
              + +
Sbjct: 943 GVGENW 948


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 202/709 (28%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWV 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 411 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    Q   +Y   D + 
Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 514 TLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+    PI++VS EQR   K +                  
Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 836 --EITSRNGIRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887

Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V      +       +  LM      A  +PL AE      +
Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/700 (15%), Positives = 205/700 (29%), Gaps = 163/700 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           +  D ET    PL           A +   A++W+              E  A+  +L  
Sbjct: 379 VCFDTETTGLDPLV----------AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRP 428

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +     +  +  N  ++  +  K   + +  K    T +           ++       L
Sbjct: 429 FFEHTGIEKIGQNLKYDIKVLAKY-DVKVKGK-LFDTMLAHYLINPDMRHNMDVLAETYL 486

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++        GK    +              ++          EY   D + T +L + 
Sbjct: 487 NYTPVSITELIGKKGKNQ--------------KSMRDVPLDQQTEYAVEDADITLQLKQH 532

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                D           E  L  +   +   G  +D++ +  L   +  + ++L  +I +
Sbjct: 533 FEKELDEAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYE 592

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNR 281
                 +       L   LF    + D    ++     T + +LS+          +L+ 
Sbjct: 593 EAGEEFK-ISSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDY 651

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              S      ++ L E V+ DGR+        A  TGR S      QN+P          
Sbjct: 652 RGLSKLKSTYVDALPEQVAQDGRVHTDYMQTVA-ATGRLSSNNPNLQNIP---------- 700

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 VR   +       L+ AD + IE R++A ++ E+  I+
Sbjct: 701 --------------IRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQ 746

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GEDI+ +T AK FN P+++V++EQR+  K +   + Y                D  
Sbjct: 747 AFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD-- 799

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                                L     + +   +   +  +   
Sbjct: 800 -------------------------------------LSRGEAKELIDNYYKSYPKLRNY 822

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +L +           +                           RR   + +      +
Sbjct: 823 MSELVDFARENGYVKTVLD--------------------------RRRYLNGINSSNGVV 856

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
             A  +               +Q  + DI+   M N  +          ++L VHDE+V 
Sbjct: 857 RGAAERN---------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907

Query: 635 ETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           + P+     +  L    M      A  +PL  E    + +
Sbjct: 908 DVPNIELDDIKNLIKTEMESAFKMA--VPLDVEVGVGQNW 945


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/713 (15%), Positives = 195/713 (27%), Gaps = 163/713 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQ----------- 50
           +  D ET    P            A +      W +  + +       +           
Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGETLDALAYIPLGHKGNEDSSPEQLP 441

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + + L  +L          N+ ++R++  +  G+ +     I T +           
Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GVALEGV-VIDTLLADYLRDAAAKH 499

Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L+        F         GK                           +    YC  D
Sbjct: 500 GLELMAEREFGFQPTAFTDLVGKKQ------------------TFADVPLEPASLYCGMD 541

Query: 167 VEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           V  TR L   L    +             E+ L  +   +   G RID+  +  L E + 
Sbjct: 542 VHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMG 601

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSN 269
              ++L+ D          +      L   LF   G+D            T  ++L    
Sbjct: 602 STLQQLESDAKAAAGVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLG 660

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                  L+L     S      ++ L + V +  GR+         + TGR S      Q
Sbjct: 661 NDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 719

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                             S  +R   +   G  L+ AD + IE R+
Sbjct: 720 NIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQIELRI 755

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           L  ++GE+   +A+ +G+D++  T     +    +VS ++R +GK +   + Y  GA+ F
Sbjct: 756 LTHLSGEEVLQEAYRSGDDVHALTARLLLDKN--EVSPDERRLGKTINFGVIYGMGAQRF 813

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                     + Q           + + +  +     +         + ++G        
Sbjct: 814 -----ARETGVSQSEAKEFLARYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFD 868

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                                                   L     K  + I L  +RR 
Sbjct: 869 R-------------------------------------NGLGRLLGKAPLEIDLNVARR- 890

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                           +Q +R            +Q  S DI+   M              
Sbjct: 891 ------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALQRQGLPA 932

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            ++L VHDE+V E       +   L    M +    A  +PL  E      + 
Sbjct: 933 QLLLQVHDELVLEVAPNALDATRELVVQTMEQAV--ALSVPLVVETGVGANWM 983


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/701 (16%), Positives = 206/701 (29%), Gaps = 154/701 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAMPSD-----L 57
           D ET    P            A +     AW +EP  +            +P       L
Sbjct: 371 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 420

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
              L  +       N+ F+R++  +  GI++       T + +         SL      
Sbjct: 421 RPILESDRHPKALQNAKFDRLIL-RHQGIELAGV-VFDTMLASYLLNPSLGHSLDALADR 478

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L            K                   +     A     +YC  DV   + L 
Sbjct: 479 WLKLQTRSYSDLVPKG------------------KTIAQVAIAAVAQYCGSDVHVVQRLI 520

Query: 175 KRLI------PLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L       P         E  L  +   + DRG RID   + +L E +  E  +L+  
Sbjct: 521 PLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEG- 579

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLI 278
                 G   +      L   LF   G+++           T  ++L          DLI
Sbjct: 580 AAHTLAGDRFNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLI 639

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L     +      ++ L   V++DGR+         + TGR S      QN+P       
Sbjct: 640 LEHRTLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIP------- 691

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                 S  +R   +   G  L  AD + IE R+LA ++ E   
Sbjct: 692 -----------------IRTEFSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 734

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++A+  G+D++  T +  F    ++++ E+R IGK++   + Y  GA+ F          
Sbjct: 735 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 787

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                        ++ + +  ++   ++ Q       + ++G       +          
Sbjct: 788 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFDFED--------- 838

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                                         L   R      I L   R   +        
Sbjct: 839 ----------------------------TGLQKLRGSDPESIDLDKIRPSRF-------- 862

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVS 634
                 +QL+R            +Q  S DI+   M             ++L VHDE+V 
Sbjct: 863 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 911

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E P   + S+   +   M +       +PL  E +    + 
Sbjct: 912 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 950


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F +P++KV+ EQR   K +   L Y            
Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S    +  LM ++   A  +PLK +      +
Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 202/702 (28%), Gaps = 165/702 (23%)

Query: 21   VWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS------------------AM 53
                A +A +   + A  D                   +S                    
Sbjct: 415  TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVRET 474

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
             S L + L D +V+ V  N  +  ++ K+     I  + +  T +++           + 
Sbjct: 475  LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531

Query: 111  NACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166
            +     L  +    K   G     +         +  Y    A+  ++ W +        
Sbjct: 532  SLAERWLGHTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591

Query: 167  VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                  +++RL      ER L  +   + +RG  +D  ++ +L   +AQ    L+++I +
Sbjct: 592  GLT--RVYERL------ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYR 643

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDLILN 280
            L             L   LF   G+     ++     T   +L         L + ++  
Sbjct: 644  LAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            R   +       + L   V  + +   T     A+ TGR S      QN+P         
Sbjct: 703  RQ-LTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIP--------- 752

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                   +R+  +A+ G KLV AD + IE RVLA +A      +
Sbjct: 753  ---------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            AFA+G DI+  T ++ F  P+D +  E R   K +                    G+   
Sbjct: 798  AFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINF--------------GIIYGISAF 843

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              +  +                                  +      K +  +  G+   
Sbjct: 844  GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++                                          RR  Y D++     +
Sbjct: 874  MENTKAFARENGYVETIF--------------------------GRRAHYPDIRSSNPSM 907

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634
                    R            +Q  + DI+   M          K    ++L VHDE++ 
Sbjct: 908  RAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958

Query: 635  ETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
            E  D     ++  + S+M      A    +PLK +   A  +
Sbjct: 959  EVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F +P++KV+ EQR   K +   L Y            
Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S    +  LM ++   A  +PLK +      +
Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/726 (14%), Positives = 198/726 (27%), Gaps = 184/726 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET S            A  A +   ++A ++          +           
Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402

Query: 54  ------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
                                    S L   L +  +  +  N  ++  +F    GI++ 
Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461

Query: 90  SKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
              +  T + + T       ++ +     L       +   GK                 
Sbjct: 462 GVAF-DTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL------------ 508

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIN 195
                         EY   D + T +L + L               + E  L  +   I 
Sbjct: 509 ---TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIE 565

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  ID   +L     I +  ++++  +         +   T  L+  LF   G+    
Sbjct: 566 RNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTF-NLASTKQLQEILFEKLGLPVLK 624

Query: 253 -LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                +  T + +L        L   L++     S       + L + ++   GR+  + 
Sbjct: 625 KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSY 684

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   +
Sbjct: 685 NQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFV 719

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G K+V AD + IE R++A ++ ++  I AFA G+DI+  T A+ F   + +V+ EQR
Sbjct: 720 AREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQR 779

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   L Y        +      L + +          F+ +   +     +++  
Sbjct: 780 RSAKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVA 834

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            E    + L G    L           +      L +      +      +A  +  V  
Sbjct: 835 VEKGYVETLFGRRLYL---------PDIKSGNAILRKAAERVAINAPMQGTAADIIKVAM 885

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +    RD                                                  D
Sbjct: 886 IGIDNAIRDN-------------------------------------------------D 896

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
            +   M             VHDE+V E           L    M K  S    +PL AE 
Sbjct: 897 EIKMIM------------QVHDELVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAEV 942

Query: 668 YEAKRY 673
              + +
Sbjct: 943 GVGENW 948


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/710 (14%), Positives = 179/710 (25%), Gaps = 175/710 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------- 50
            +D ET    PL             +   + A             Q              
Sbjct: 345 AVDTETDGLDPLTAP----------LVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPV 394

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--- 107
                 L     D +V+ V  N+ F+ ++  +     +       T +++          
Sbjct: 395 GTALEILEPLFADPSVLKVFQNAKFDLLVLTQAG--SVQPAPIDDTMLISYAQSAGQHGQ 452

Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +       L+ S        G                                 Y   D
Sbjct: 453 GMDELSRLTLDHSPIPYDEVTGTGRNR---------------VVFSQVDIARATPYAAED 497

Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  L++ L P            + ER L  +   +   G  +D D +  +    AQ 
Sbjct: 498 ADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDADDLRAMSIEFAQR 557

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271
              ++ +I KL      +      L   LF   G+     ++     T  S+L       
Sbjct: 558 MGVIEAEIHKLAGREF-NVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQG 616

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 IL     +       + L   ++   GR+  +      + TGR S      QN+
Sbjct: 617 HDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSF-QMAVTTTGRLSSNDPNLQNI 675

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A+ G  LV AD + IE R+LA
Sbjct: 676 P------------------------IRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLA 711

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +A      +AFA G+DI+  T ++ F  P++ +    R   K +               
Sbjct: 712 DVANIPALREAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAINF------------- 758

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                     +  +          A+
Sbjct: 759 -GIIYGIS------------------------------AFGLGRQLGIPPGEARGYIDAY 787

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++ G+    + +                                      P  RR   
Sbjct: 788 FARYPGIRDYMERVKAEARAKGYVTT--------------------------PFGRRCWV 821

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DI 624
             +    +          R+            Q  + DI+   M               +
Sbjct: 822 PGIADKSAVRRNYA---ERQAINAPL------QGGAADIIKRAMVRIPAALSDAGLDGRM 872

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E        +  L   +M    +    +PL  E      +
Sbjct: 873 LLQVHDELVFEVRKDDADRLAALVRQVMESAAT--LSVPLVVETGTGTNW 920


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/695 (15%), Positives = 190/695 (27%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI +       T + +          + + 
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170
               L       +   GK                     +     QL    Y +   EA 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R     D E  + L+ + +   G  ID  L+      IA    +L+    +L  G
Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           L+L     S 
Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+   GR+        A  TGR +      QN+P              
Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IAS G ++V AD + IE R++A I+G+   ++AFA G
Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F     +V+ +QR I KV+                    G+        
Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      A    +   A +L    +  ++ GV    +D  
Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAHYMEDTR 795

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 796 TTAKDKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M               +++ VHDE+V E PD 
Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDD 880

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  +M         +PL AE      +
Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/702 (14%), Positives = 196/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
           ++  D ET S   L          +A +   ++ W                   +     
Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKVEATKLLETFR 410

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
            +  +E +  V  N  ++  + +    I++       T +           ++       
Sbjct: 411 PFFENERIGKVGQNLKYDLKVLQNY-NIEVRG-ALFDTMIAHYLLNPDMRHNMDILSETY 468

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN++    +   GK    R  +                       EY   D + T +L  
Sbjct: 469 LNYTPIAIESLIGKGKAQRSMRTV---------------PLDQVKEYAVEDADVTWQLKN 513

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                          +D E  L  +   +   G  +D+  + +  + +  +  +L+  I 
Sbjct: 514 VFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIA 573

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      L   LF    ID     ++     T + +L+           IL 
Sbjct: 574 EQA-GESFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILE 632

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   V+   GR+  T     A  TGR S      QN+P        
Sbjct: 633 WRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVA-ATGRLSSNNPNLQNIP-------- 683

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   VR   IA      L+ AD + IE R++A ++ E   
Sbjct: 684 ----------------IRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNM 727

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I +F   EDI+ +T AK F+ P+++V++EQR+  K +   +                G+ 
Sbjct: 728 IDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVS 773

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               S                                  L  +  + +   + A +  + 
Sbjct: 774 AFGLSAQ------------------------------TNLSRSESKELIDTYYATYPNLR 803

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                  +           +                           RR    D+     
Sbjct: 804 NYISKQIQFAQEHGYVETVL--------------------------GRRRYLPDIHSRNQ 837

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +  A  +               +Q  + DI+   M               ++L VHDE+
Sbjct: 838 VVRGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDEL 888

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V + P T    V   +   M    + A  +PL A+      +
Sbjct: 889 VFDVPKTELNIVKPLIKEAMESAFNLA--VPLVADLGVGDNW 928


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +            TE   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E  + V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   I   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     + Y               +++ +      
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q + +     D        + + G    L           +      +   
Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            + 
Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y    +ENI                      ++L VHDE+           V  +
Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M     +   +PL+A+      +
Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F +P++KV+ EQR   K +   L Y            
Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S    +  LM ++   A  +PLK +      +
Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 198/695 (28%), Gaps = 150/695 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   + + +           +            + 
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 389 ARLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446

Query: 113 C-LALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L       +   GK      F + ++D           +        Y +   E T
Sbjct: 447 ALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQALYPQVTAEKT 506

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E   R       E     + + +   G  ID + +      IA    +L+ +   L  G
Sbjct: 507 LEYVYR-----AIELPTSRVLRKMERTGVLIDAEKLRLQSSEIATRLIQLESEAYVLAGG 561

Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +      +    F    +         +  T + +L           ++L     S 
Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620

Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 + L   V+ + GR+        A  TGR +      QN+P              
Sbjct: 621 LKSTYTDKLPRMVNATTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA  G KLV AD + IE R++A I+G++  ++AF+ G
Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQG 715

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A+ F+    +VS +QR + KV+   L                G+     + N
Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLI--------------YGMSSFGLAAN 761

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +                               +   A +L    + A++ GV +   +  
Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RRL   ++ G       A  
Sbjct: 792 VSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDT 639
              R            +Q  + D++   M          K G  +++ VHDE++ E PD 
Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDELILEVPDA 876

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  LM         +PL AE      +
Sbjct: 877 ELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/717 (15%), Positives = 195/717 (27%), Gaps = 167/717 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ----------- 50
           + ID ET    P            A +      W   ++ +       +           
Sbjct: 400 IAIDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELTEATPP 449

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                  +   L  +L          N+ ++R++  +  G+ +     I T +       
Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLNGV-VIDTLLADYLRDA 507

Query: 106 --PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                L         F         GK                           +    Y
Sbjct: 508 AAKHGLDVMSEREFGFRPTTYGDLVGKKQ------------------TFADVEIEPASLY 549

Query: 163 CKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           C  DV  TR L  +L                  E+ L  +   +   G RID+  +  L 
Sbjct: 550 CGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLS 609

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSIL 265
           + +     +L+ +  ++ +    +      L   LF   G+D            T  ++L
Sbjct: 610 DELGSTLNRLETEAKQVAEVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVL 668

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324
                      L+L     S      ++ L + V +  GR+         + TGR S   
Sbjct: 669 EKLEHDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSN 727

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                             S  +R   +   G  L+ AD + I
Sbjct: 728 PNLQNIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQI 763

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+L  ++GE+   +A+  G+D++  T         D+VS +QR +GK +   + Y  G
Sbjct: 764 ELRILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGKTINFGVIYGMG 821

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           A+ F          +         T   + + +  +     +         + ++G    
Sbjct: 822 AQRF-----ARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 876

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                                                       L     K  + I L  
Sbjct: 877 FHFDR-------------------------------------NGLGRLLGKDPLEIDLDV 899

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
           +RR                 +Q +R            +Q  S DI+   M          
Sbjct: 900 ARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAMLLSQ 940

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                ++L VHDE+V E       +   L  + M         +PL  E    + + 
Sbjct: 941 GIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAIK--LSVPLVVETGVGRDWM 995


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 191/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
            + ID ET S           YA  A +   ++A ++             E   + +   
Sbjct: 349 TVSIDTETTSL----------YAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
                E +M V  N  ++  + +   G+ +       T +        L  ++       
Sbjct: 399 PLYESEAIMKVGQNMKYDLEVLRNY-GVCLRG-ALFDTMIAHYLIQPELRHNMDYMAEVY 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           LN+         G K    +  +    +                  EY   D + T +L 
Sbjct: 457 LNYQTIHIDTLIGAKGKHQKSMRELSPA---------------QVYEYAAEDADITLQLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G RID   + +  +++ +    L+  I
Sbjct: 502 NVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEARI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +L  G   +      +   LF    I D    ++     T + +L            IL
Sbjct: 562 YELAGGEF-NIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDIL 620

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L + ++   GR+  +      + TGR S      QN+P       
Sbjct: 621 DYRGLKKLLGTYVDALPKLINTRTGRIHTSFNQTV-TATGRLSSSEPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G     +R   I   G     AD + IE RV+A ++G+   
Sbjct: 673 -----------------VRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF  G DI+  T AK +   ++ V++++R   K     +                G+ 
Sbjct: 716 IEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGII--------------YGIT 761

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +   ++ +                                     + +   +      V 
Sbjct: 762 VFGLAERLDID------------------------------RNEAKQLIDGYFMMFPQVK 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +   E                                       RR    D+    +
Sbjct: 792 DYMEHSKEVARTHGYVETIFH--------------------------RRRYLPDINSHNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
              T      R            +Q  + DI+   M    +          ++L VHDE+
Sbjct: 826 ---TVRGFAERNAINAP------IQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M +       +PL A+      +
Sbjct: 877 NFSVFPEEKERVERIVMEEMQQAYP--LRVPLVADSGWGTNW 916


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRQWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LDTLKPLLEDEKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             D E  L  +   I   G  ID +++    + +A    
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQNILAAHSKELAIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L      +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAGEPF-NLASPKQLQVILYEKQQLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVIIEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  +      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +    + +           
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQESAPLVRV----------- 880

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH E V
Sbjct: 881 ---------------------------IMQ-------------VHDE---LVFEVH-ETV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 189/700 (27%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET    P            A +   + +             +            +
Sbjct: 313 FAFDTETTGLDP----------RTAELVGISISLQAHEAFYIPVGHRYLGMPDQLPRETV 362

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L     +  +  V  N  F+  +     G+++    W  T + +           L 
Sbjct: 363 LERLRPAFGNPAIRKVGQNLKFDLQILA-VAGLEVQG-SWCDTMLCSYLLNPSRGGHGLD 420

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN          G                            +    Y   D +A
Sbjct: 421 ALAQEHLNHKMISYDEVTGSGKNR---------------ICFSEVEVEKATRYAAEDADA 465

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L ++L+P+           + E  L  +   +   G  +DL  + +L     Q  ++
Sbjct: 466 TWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQE 525

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274
           L++ I++L  G   +      L   LF   G+     ++      T   +L+        
Sbjct: 526 LEKRIIELAGGPF-NLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEI 584

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L+    +       + L++     GR+  +      + TGR S      QN+P   
Sbjct: 585 AKLLLDYRGLTKLKSTYTDALAKLTDRQGRVHTSYNQAV-TATGRLSSSDPNLQNIP--- 640

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  ++ AD + IE RVLA ++ 
Sbjct: 641 ---------------------IRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQ 679

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     AF+  EDI+  T ++ F    + V+ E R   K +   + Y  G       +  
Sbjct: 680 DPVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQG-----AFSLA 734

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L + +        +  E    A +          E      ++G    +         
Sbjct: 735 KQLGVARNVAEKFIAAYKERHSGAIAFLDSCIASAKETGYVTTILGRKLPIA-------- 786

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +     +L                                           + Y    
Sbjct: 787 -DITSSNGNLRSFAERNA-----------------------------------INYPIQG 810

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                +  A   + R     G  +  I+Q                        VHDE+V 
Sbjct: 811 SAADIIKQAMLGVDRAIRAEGLQSRLIMQ------------------------VHDELVF 846

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  +T    +  L    M++    A  +PLK +    K +
Sbjct: 847 EVLETELEQMRELVNREMSQAV--ALKVPLKVDIQWGKNW 884


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  +     +   K +
Sbjct: 782 -GLLYGMS------------------------------AFGLAKQIGVDRAVAQDYIKRY 810

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L  + M    +       WA    +PL  E    + +
Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKIAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 201/702 (28%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58
           ++  D ET +   L          +A +   ++ W           ++      +     
Sbjct: 357 EVCFDTETTNVDAL----------EAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFR 406

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
            +  +E +  V  N  ++  + +   G+++       T +           ++       
Sbjct: 407 PFFENEQIAKVGQNLKYDLKVLQNY-GVEVQG-ALFDTMIAHYLLNPDMRHNMDILSETY 464

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN++    +   GK    R  +                       EY   D + T +L  
Sbjct: 465 LNYTPIAIESLIGKGKAQRSMRTV---------------PIDEVKEYAVEDADVTWQLKN 509

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                          +D E  L  +   +   G  +D+D + +  + +  +  +L+  I 
Sbjct: 510 VFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIA 569

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      L   LF    ID     ++     T + +L+           IL 
Sbjct: 570 QQA-GETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADILE 628

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   V+   GR+  T     A  TGR S      QN+P        
Sbjct: 629 WRQVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVA-ATGRLSSNNPNLQNIP-------- 679

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   VR   IA      L+ AD + IE R++A ++ E   
Sbjct: 680 ----------------IRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNM 723

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I++F +GEDI+  T AK FN P+++V++EQR+  K +   + Y                D
Sbjct: 724 IESFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIY-----GVSAFGLSAQTD 778

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                                  L  +  + +   + A +  + 
Sbjct: 779 ---------------------------------------LSRSESKELIDTYYATYPNLR 799

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                  E           +                           RR    D+     
Sbjct: 800 NYINRQIEFAREHGYVETIL--------------------------GRRRYLPDIHSHNQ 833

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632
            +     +               +Q  + DI+   M          K    ++L VHDE+
Sbjct: 834 VVRGGAERN---------AVNAPIQGSAADIIKIAMIRIHNQLQAQKLQTRMLLQVHDEL 884

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V + P T    V   +   M    + A  +PL A+      +
Sbjct: 885 VFDVPKTELELVKPLIKDAMENAFTLA--VPLVADLGVGNNW 924


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 187/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           +   D ET S  PL          QA +   + A +                     ++ 
Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQ 405

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  G+ +       T + +           +
Sbjct: 406 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDM 463

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 508

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 509 ITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 569 LAAQQKATELA-GRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 628 LPRVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M N             ++L
Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIANHAQRAKMIL 883

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M         +PL  +      +
Sbjct: 884 QVHDELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLMVDSGVGDNW 929


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 200/701 (28%), Gaps = 152/701 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
             ID ET               + A +   ++A                          +
Sbjct: 380 FAIDTETDGLD----------TKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKV 429

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L D   + V  N  F++ L     GI +    +  T + +           + 
Sbjct: 430 LALFKPLLEDPQALKVGQNLKFDQSLLANY-GIKLQGIAF-DTMLESYVFNSVAGRHDMD 487

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +    +    Y   D + 
Sbjct: 488 SLSERHLNHKTLSFEDIAGKGKNQL---------------TFNQIPLEQAAIYAAEDADV 532

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L P             + E  L  +   +   G  ID D++L   + +     
Sbjct: 533 TLRLHLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHSKELQLRLT 592

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  L+    +         +  T +++L+   +    
Sbjct: 593 ELEKKAHDIA-GETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEAVLAELALDYPL 651

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   +    GR+  +      + TGR S      QN+P  
Sbjct: 652 PKIILEHRSLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAV-TSTGRLSSRDPNLQNIP-- 708

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 709 ----------------------VRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLS 746

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ G+DI++ T A+ F  P+ +VS +QR   K +   L Y            
Sbjct: 747 QDQGLLNAFSEGQDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMS-----AFGL 801

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +F         F  + +   +    +++  +      L G    L     +  
Sbjct: 802 ARQLNVSRFEAERYMNLYFTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNA 861

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +         SR       
Sbjct: 862 NRR-----KAAEREAINAPMQGTAADIIKRAMIHIDFWLQQEEQKLAPKQKSR------- 909

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                        VHDE+V
Sbjct: 910 ------------------------VNLIMQ------------------------VHDELV 921

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  D+   S    +  LM K+    + L LK +      +
Sbjct: 922 FEVHDSVLKSATDKIRELMEKS---TQNLLLKVDIGFGNNW 959


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/713 (16%), Positives = 194/713 (27%), Gaps = 170/713 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           + +D ET S  P+             +   + A             +             
Sbjct: 407 VAVDTETTSLDPM----------SCELVGVSLAITPGRACYIPLQHREPGDGDLFGGAAL 456

Query: 52  ---AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               +P D     L   L D+ V+ +AHN  ++ ++  +     +       T +++ T 
Sbjct: 457 LQGQIPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVLARY---GVDVAPIEDTMLISYTL 513

Query: 104 G---LPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   L       L           G                          A    
Sbjct: 514 DTGRNNHGLDELTLKHLGHENIPFSAVAGSG---------------RNFIGFARVALDRA 558

Query: 160 GEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKL 209
            EY   D + T  L++ L P    E            +      +  RG  ID  ++ +L
Sbjct: 559 TEYATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRL 618

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSIL 265
               AQ+  +L+ DI  L  G   +      L   LF   G+     +      T  S+L
Sbjct: 619 SGEFAQDMARLEADIFDLA-GETFNLGSPKQLGDILFGKMGLPGAKKTATGAWSTSASVL 677

Query: 266 SHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
                        IL+    S       + L   V+   GR+  +     A+ TGR S  
Sbjct: 678 EDLANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYALA-ATTTGRLSSS 736

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                            A   +R   +AS G  L+ AD + 
Sbjct: 737 DPNLQNIP------------------------VRNEAGRKIRKAFVASPGHVLISADYSQ 772

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA IA      KAFA+G DI+  T ++ F  P+  +  E R   K +   + Y  
Sbjct: 773 IELRLLAHIADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYG- 831

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          FE +     +    +    E      + G  C
Sbjct: 832 ----ISAFGLANQLSIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVC 887

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                        +          +           A        +V             
Sbjct: 888 H---------FPRIGSANASDRAFYERAAINAPIQGAAADIIRRAMVRMDD--------- 929

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                                                   A++ + L   M         
Sbjct: 930 ----------------------------------------ALASEGLKAQM--------- 940

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA--KGLPLKAEGYEAKRY 673
            +L VHDE+V E P     +   +   +M + P+ A    +PLK +   A  +
Sbjct: 941 -LLQVHDELVFEAPKKEAEATIEIARRVMEEAPAPAVQLAVPLKVDARAAANW 992


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +            TE   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E  + V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   I   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     + Y               +++ +      
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q + +     D        + + G    L           +      +   
Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            + 
Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y    +ENI                      ++L VHDE+           V  +
Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M     +   +PL+A+      +
Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 195/700 (27%), Gaps = 157/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L DE ++ +  N  F++ + ++   ID+    +  T + +           + 
Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +  A +  G Y   D + 
Sbjct: 461 SLAERYLSHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L ++L                    L  +   I   G  ID  ++ +  + +     
Sbjct: 506 TLHLHQKLWGKLQPHTDLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKRLTIRLA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    +L      +   T  L+  L+    + +       +  T + +L+   +    
Sbjct: 566 ELETQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALGYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   ++   +   T      + TGR S      QN+P   
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSG 720

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFANG DI+  T ++ F T +DKV+ EQR   K +   L Y             
Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L++ +          FE +   + +    + Q  E      L G    L         
Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +G                     ++                        
Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMI------------------------ 862

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                   A    +R+ T   K+   I+Q                        VHDE+V 
Sbjct: 863 --------AIDDWLRKDTPKVKM---IMQ------------------------VHDELVF 887

Query: 635 ETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  D+     +  +  LM         +PL+ +      +
Sbjct: 888 EIHDSVIEESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/718 (14%), Positives = 187/718 (26%), Gaps = 184/718 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           + ID ET     +          QA +   +                             
Sbjct: 355 VAIDTETTGLDEM----------QAELVGVSLCTGPGRAAYLPLGHVDGAADLFGSGARV 404

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L D +V+ +  N  ++  +  +     I       T +L+    
Sbjct: 405 EGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARH---GIRMVPLDDTMLLSYAQN 461

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  +       L       K   G  K+ I         +                
Sbjct: 462 AGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKAS--------------- 506

Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
             EY   D E T  L++ L P              ER +  +   +   G RID + + +
Sbjct: 507 --EYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKR 564

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264
           +    AQ+   L+ +I +L  G   +      L   LF   G+      +     T   +
Sbjct: 565 MSNAFAQKMAGLEAEIHELAGGPF-NVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEV 623

Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           L             +L+  A S       + L   V+   GR+  +    GA +TGR + 
Sbjct: 624 LEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGA-QTGRLAS 682

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   +A+ G +LV  D +
Sbjct: 683 TDPNLQNIP------------------------VRTDEGRRIREAFVAAPGMRLVSLDYS 718

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A      +AF +G DI+  T ++ F  P++ +    R   K +       
Sbjct: 719 QIELRILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAIN------ 772

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+                                   A   ++    
Sbjct: 773 --------FGVIYGISGF------------------------------GLARNLRIPRAE 794

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  +   +         G                             D  +  
Sbjct: 795 AQAFIDTYFERFPEIRAYMDRTVAGAKQ--------------------------DGFVRT 828

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----AT 618
              RR++   +                            +Q  + DI+   M        
Sbjct: 829 LFGRRIMTPGIN----------QSGPAAGGARRAAINAPIQGAAADIIRRAMIRMPQAIA 878

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAKRY 673
                ++L VHDE+V E  +     +  +   +M      A    +PL  +  +   +
Sbjct: 879 HLPARMLLQVHDELVFEVEEAAVPELVEVARGVMQGAADPAVRLDVPLIVDAGQGANW 936


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/709 (14%), Positives = 202/709 (28%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   + A  +                       +
Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSCAVAEGEAAYIPVAHDYLDAPQQLDREWV 410

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 411 IAQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    Q   +Y   D + 
Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  I+  L+    + IA    
Sbjct: 514 TLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLD 573

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L      +      L+  LF    +         +  T + +L    +    
Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+    PI++VS EQR   K +                  
Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 836 --EITSRNGMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887

Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V      +       +  LM      A  +PL AE      +
Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/727 (14%), Positives = 202/727 (27%), Gaps = 185/727 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +            A  A +   +++  +             +        
Sbjct: 362 KLVAVDTETDNVD----------AMSAHLVGISFSLSNGEACYIPLAHTQQISVQPQQED 411

Query: 54  -------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
                                     + L   L +  +  V  N  ++  +F    GI++
Sbjct: 412 LFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKKVGQNIKYDLTVFANH-GIEL 470

Query: 89  PSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
               +  T + + T       ++       L+      +   GK                
Sbjct: 471 QGVAF-DTMLESYTLNSTGRHNMDELAERYLDHKTIAFEDIAGKGKNQL----------- 518

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTI 194
                    A +   EY   D + T +L ++LI              + E  L  +   +
Sbjct: 519 ----TFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARV 574

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G  ID D +L   + + Q   +++  +         +   T  L+  LF    +   
Sbjct: 575 EQNGVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQAF-NLASTKQLQEILFEKLALPVL 633

Query: 253 --LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGT 308
                 +  T + +L        L   L+    A S       + L + ++   GR+  +
Sbjct: 634 KKTPKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTS 693

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 + TGR S      QN+P                            A   +R   
Sbjct: 694 YHQAV-TTTGRLSSSDPNLQNIP------------------------IRTEAGRRIRQAF 728

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA +G K+V AD + IE R++A +A ++  I AFANG+DI+  T A+ F   + +V+ EQ
Sbjct: 729 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQ 788

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   L Y               L + +          F+ +   +     +++ 
Sbjct: 789 RRSAKAINFGLIYGMS-----DFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRES 843

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVP 547
                  + L G    L           +        +      +      +A  +  + 
Sbjct: 844 ASVKGYVETLFGRRLYL---------PEIKSNNAIRRKAAERLAINAPMQGTAADIIKIA 894

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
            + +                                  + +R                  
Sbjct: 895 MISID---------------------------------KQIRADQN-------------- 907

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666
             +   M             VHDE++ E          G + + M K    A  +PL AE
Sbjct: 908 --IKMIM------------QVHDELIFEVKQECIEYYTGLIKTEMEKAI--AMKVPLIAE 951

Query: 667 GYEAKRY 673
                 +
Sbjct: 952 VGVGANW 958


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 187/699 (26%), Gaps = 157/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           + +D ET S   +           A I   + +                          +
Sbjct: 362 VALDTETDSLDEMR----------AQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPIGQV 411

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L D     +  +  ++R +F    GI++       T + +    +  P +L +
Sbjct: 412 LARLKPWLEDGRRHKLGQHIKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHNLGS 469

Query: 112 ACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +   GK                                Y   D + T
Sbjct: 470 LAERHTGRKGISYEDLCGKGAHQL---------------PFAQVPVDKAAAYSCEDADLT 514

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             + + L P            + E         I   G  ID   + +    + Q  ++L
Sbjct: 515 LNVHQTLWPQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQL 574

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276
             D   L      +      L    F   G+ +V  +      T + +L           
Sbjct: 575 QADAYALAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAENYPLPA 633

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L             + L++      GR+        A  TGR S      QN+P    
Sbjct: 634 KLLEHRGLIKLKGTYTDKLTQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP---- 688

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A  G  +  AD + IE R++A ++ +
Sbjct: 689 --------------------IRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDD 728

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AF  G D++  T A+ F   +D+VS EQR   KV+   L Y  G     +     
Sbjct: 729 QALLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMG-----SFGLAK 783

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L L+  +        F+ +   + +    +         + + G    L          
Sbjct: 784 NLGLENKAAAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYL---------P 834

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +         G                                                
Sbjct: 835 EINSPNGPRRSGA----------------------------------------------- 847

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           + S +N              K+    VQ        E   +A +    +++ VHDE+V E
Sbjct: 848 ERSAINAPMQG---TAADLIKMAMVAVQ-------KE--LDAQQPAIRMIMQVHDELVFE 895

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P      +   +  LM +  +    +PL AE      +
Sbjct: 896 LPGNAVDWLRTHVPRLMAEVAT--LKVPLLAEVGVGPNW 932


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 200/694 (28%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A+ + +   ++A           T           +  +   L   L +   + V  ++ 
Sbjct: 348 AQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKALKPLLENPNKLKVGQHAK 407

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLT 123
           FE  +            GI +    +  T + +           + +     L  S+   
Sbjct: 408 FETNILANCAIGGDQNNGILVQGIAF-DTMLESYVLDSTATRHDMDSLALKYLGQSKTDF 466

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK +                       + +L G Y   D + T  L + L      
Sbjct: 467 QDIAGKGVKQL---------------TFDQISLELAGPYAAEDADVTFRLHQALQEKLAA 511

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      + ++   L+ +   +     
Sbjct: 512 TPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVALEREAFAIAGEEF 571

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 572 -NLGSPKQLGVILYEKLGLPVLSKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKL 630

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++S  GR+    Q   A  TGR S      QN+P               
Sbjct: 631 KSTYTDRLPEQINSRTGRVHTNYQQAVA-ATGRLSSIDPNLQNIP--------------- 674

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF +  
Sbjct: 675 ---------IRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHNL 725

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ +QR   K +                    G+         
Sbjct: 726 DVHRATAAEVFGVELEAVTLDQRRSAKAINF--------------GLIYGMS-------- 763

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 764 ----------------------AFGLAKQIGVDRKQSQAYIDRYFARYPGVLAYMERTRA 801

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 802 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPALR---KG 832

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M    +          ++L VHDE+V E  +  
Sbjct: 833 AERTAINAP------MQGTAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDL 886

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   +   M+   +    +PL  E      +
Sbjct: 887 VDQVRDEIRQHMSAAAT--LDVPLLVEVGVGNNW 918


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 211/690 (30%), Gaps = 129/690 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SAMPSDL 57
           D ET    P            A +      W  E   +       Q         +   L
Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQSGDNLNLEIVLEKL 420

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
              L  +    V  N+ F+  +F    GI +       T V +      L  +L++ C  
Sbjct: 421 RPILASDDYPKVFQNAKFDIDVF-YHQGITVKGL-VFDTMVASYVLHPELTHNLEDLCDR 478

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                        K+L     K   D           + A+  +    K   E T ++  
Sbjct: 479 YL---TGITSLSYKSLGIPAGKTIADLDIPTTANYCGLDAYATYLLREKLQAELT-KIPP 534

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                S+ E  L ++   + + G +I+++ +    + + ++   ++++  +   G   + 
Sbjct: 535 LYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLERDLAYIEKNAYESI-GETFNL 593

Query: 236 RQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                L   LF    ++            T +S+L          D IL     S     
Sbjct: 594 SSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLVDYILEHRTLSKLKST 653

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L +       R+         + TGR S      QN+P                  
Sbjct: 654 YVDALPKLAEPKTARVHTDFNQT-ITSTGRLSSSNPNLQNIP------------------ 694

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                      S  +R   I  NG  LV AD + IE R+LA ++ E   ++A+ + +D++
Sbjct: 695 ------IRSEFSRRIRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVH 748

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T    F+    +++ E+R++GK +   + Y  GA+ F   +      L          
Sbjct: 749 KVTAQLLFDK--REITPEERSLGKTINFGVIYGMGAQKFARESK-----LTVEQGRKFIE 801

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              + + Q   +    + Q       + ++G             +  + +L         
Sbjct: 802 KYHQRYAQVFEYLENSKKQAITQGYVETILGRRRYFNFD-----NPLLKRL--------- 847

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R L   D+  D   LN   +QL+R
Sbjct: 848 ------------------------------------RGLSLHDIDLDSLKLNNEEAQLLR 871

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645
                       +Q  S DI+   M    +        ++L VHDE+V E P   + S+ 
Sbjct: 872 SAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVLEVPREEWPSLE 925

Query: 646 -TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             + + M +  S    +PL  E      + 
Sbjct: 926 SKIKTTMEEAVS--LTIPLLVEIKAGDNWM 953


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F +P++KV+ EQR   K +   L Y            
Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S    +  LM K+   A  +PLK +      +
Sbjct: 894 ----ESVLQSAEQKIRELMEKSMQLA--VPLKVDVGVGANW 928


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 203/700 (29%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                        + +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L +E  + V  N  F++ +  +  GI++    +  T + +           + 
Sbjct: 405 LATLKPLLENEKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRDLMEQSMQLA--VPLKVDVGVGYNW 928


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/712 (15%), Positives = 207/712 (29%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
               D ET S  P+          QA +   + A   E                      
Sbjct: 380 FFAFDTETTSLDPI----------QAKLVGFSLALQPEKAAYVPLEHVEGENDLLKGGRI 429

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L D+ V+ +  N  ++ ++ K+     I    +  T +L+    
Sbjct: 430 VSQIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIHCFDDTMLLSYALE 486

Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157
              L  ++       L       K     GK + +        +  Y    A+  ++ WQ
Sbjct: 487 AGTLTHNMNALSERWLGHKPIAYKDLTHNGKKITSFAEVDLKQATLYAAEDADITLRLWQ 546

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +              +++RL      +R L  +   + +RG  +D  ++L+L   +AQ  
Sbjct: 547 VLKPQLVAQGMT--RIYERL------DRPLIEVLARMEERGILVDRQILLRLSGELAQAA 598

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NIT 271
             L+E+I +L+     +      L   LF   G+     ++     T    L        
Sbjct: 599 FILEEEIYQLSGEKF-NLASPKQLGDILFGKMGLPGGAKTKGGQWSTSAQTLEELAAEGH 657

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            L + +I  R   +       + L   +    GR+         + TGR S      QN+
Sbjct: 658 ILPRKIIDWRQ-LAKLKSTYTDALPSYILPKTGRVHTNYSLA-ITSTGRLSSSEPNLQNI 715

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R+  +A     L+ AD + IE R+LA
Sbjct: 716 P------------------------VRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILA 751

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF+ G+DI+  T ++ F   I+ +  + R   K +               
Sbjct: 752 HIANITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINF------------- 798

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  L         + +
Sbjct: 799 -GIIYGIS------------------------------AFGLANQLGLSRQEAGRYIQLY 827

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+    +                                           RR+ Y
Sbjct: 828 FERFPGIKDYIETTKTFARQNGYVETIF--------------------------GRRIHY 861

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624
            ++K   +      S   R            +Q  + DI+   M          K    +
Sbjct: 862 PEIK---AASPQVRSFNERAAINAP------IQGSAADIIRRAMIQMEDALEKEKLSAKM 912

Query: 625 VLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E P+     ++  +  +M     P  +  +PL+ +   A+ +
Sbjct: 913 LLQVHDELVFEVPEEESKKTMAVVKKVMENATMPVLSLSVPLEVKVMVAQNW 964


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID ++++   + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQNILVAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F   ++KV+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E      L G    L     R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + +                  
Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 199/700 (28%), Gaps = 154/700 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A     + A+                         
Sbjct: 354 KIGIDTETTSLD----------AMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANC-GIALNGI-VGDAMLASYIIESHLGHGLD 461

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +        D 
Sbjct: 462 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDK 521

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 522 QLEM--------YEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAA 573

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T + +L           +IL  
Sbjct: 574 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKN 632

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  D R+  T     A  TGR +G     QN+P         
Sbjct: 633 RSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVA-ITGRLAGNNPNLQNIP--------- 682

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 683 ---------------IRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +                    G+   
Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIYGMGQY 773

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A    +   + +     + A++ GV + 
Sbjct: 774 ------------------------------GLAKSLGIDNLSAKNFIDRYFARYPGVAEY 803

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E                                ++     RRL  SD++   + +
Sbjct: 804 MQRARECA--------------------------AGQGYVETLFGRRLYLSDIRHTNANI 837

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVS 634
               ++  R            +Q  + D++   M + ++          +++ VHDE+V 
Sbjct: 838 R---ARAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVL 888

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+     V   L  +M         +PL AE      +
Sbjct: 889 EVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 928


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/708 (15%), Positives = 210/708 (29%), Gaps = 163/708 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
           ++  D ET S   +           A +   +   +           +            
Sbjct: 344 EVAFDTETTSLNEMT----------AELVGVSLCIEPGAACYIPLLHRGGGDDLFADTSL 393

Query: 52  ---AMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
               +P       L   L D +VM VA N+ ++  +        +       T +L+   
Sbjct: 394 AEGQIPFDDAMEILQPMLEDRSVMKVAQNAKYDVKVLANY---GVEVAPIDDTMLLSYAL 450

Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                   +       L  +    K   G  K+ I        D+ PY    A+    + 
Sbjct: 451 HAGLHNHGMDGLAERYLGHTPLPIKSLIGSGKSQITFDRVPIADAAPYAAEDADITLRFH 510

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
              +     V  T ++++RL      ER L  +   +   G ++D D++ ++    AQ+ 
Sbjct: 511 KLFKPKLHQVGVT-KVYERL------ERPLVPVLARMERSGIKVDKDVLSRMSNAFAQKM 563

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQL 273
             L+ +I +L  G   +      L   LF   G+            T   IL        
Sbjct: 564 AGLEAEIHELA-GESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDLATEHD 622

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +L+    S       + L + +++D GR+  +    GA+ TGR +      QN+P 
Sbjct: 623 LPGRVLDWRQLSKLKSTYTDALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIP- 680

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  GK LV  D + IE R+LA I
Sbjct: 681 -----------------------IRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHI 717

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           AG D    AF +G+DI+  T ++ FN P+++++ + R   K +                 
Sbjct: 718 AGIDALKDAFKDGQDIHAATASEMFNVPLEEMTPDVRRQAKAINF--------------G 763

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A   ++     +     +  
Sbjct: 764 VIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYFE 793

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  G+     D  +                              ++++     R++    
Sbjct: 794 RFPGIRTYMDDTKKFAKE--------------------------NLYVQTLFGRKIHTP- 826

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628
              + +          R            +Q  + DI+   M             ++L V
Sbjct: 827 ---EINAKGPGAGFAGRAAINAP------IQGTAADIIRRAMIRMEDAIEGIPAKMLLQV 877

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
           HDE+V E  +    ++      +M      A    +P+  +  + + +
Sbjct: 878 HDELVFEVDEDATDTLIARAREVMEGAADPAVHLSVPITVDAGQGETW 925


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +            TE   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E  + V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   I   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     + Y               +++ +      
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q + +     D        + + G    L           +      +   
Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            + 
Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y    +ENI                      ++L VHDE+           V  +
Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M     +   +PL+A+      +
Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 201/703 (28%), Gaps = 161/703 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   L           A +   ++A                         A+
Sbjct: 351 FAFDTETDSLDTLT----------ANLVGMSFAITAGDAAYLPLGHDYLGAPEQLDRDAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108
            + L   L D  ++ +  N  F+  +  +  GI++    +  T + +             
Sbjct: 401 LAALKPLLEDSNLLKIGQNIKFDCGVLVRY-GIELQGIAY-DTMLESYVLNSVAGMGRHD 458

Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN+     +   GK                      +    +    Y   D 
Sbjct: 459 MDSLAERHLNYKTTTFEEIAGKGKNQL---------------TFNQVPVEQAAMYAAEDA 503

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T +L + + P  +            E  L ++   +   G  I+ D++ +  + IA  
Sbjct: 504 DVTLQLHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVR 563

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
             +L+++  +L  G + +      L+  LF    + +V  +      T + +L       
Sbjct: 564 LDELEKEAHELA-GEVFNLASPKQLQTILFEKLNLPVVKKTPGGAPSTNEEVLEELVDHH 622

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +IL     +       + L + V     R+  +      + TGR S      QN+P
Sbjct: 623 ELPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAV-TATGRLSSRDPNLQNIP 681

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IAS G +++ AD + IE R++A 
Sbjct: 682 ------------------------VRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAH 717

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   +KAFA G+DI+  T A+ F+ P+++V+ EQR   K +   L Y          
Sbjct: 718 LSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMS-----AF 772

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L + +          FE +    ++    ++Q  E    + L G    L      
Sbjct: 773 GLSRQLGIPRGEAQRYMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYL------ 826

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +        +                                             
Sbjct: 827 ---PDIKSRNGTRRKAAEREAINAPMQGTAADII-------------------------- 857

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                        +      +   K+   I+Q                    +V  VH  
Sbjct: 858 --------KKAMIAVDDWIISEAPKVRM-IMQ-------------VHDE---LVFEVH-- 890

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++   +    +  LM K+      +PL+ +      +
Sbjct: 891 ------ESELENTEQKIRELMEKSV--VLDVPLQVDVGIGDNW 925


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/686 (15%), Positives = 193/686 (28%), Gaps = 137/686 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLL--- 58
           + +D ET    PL             +   ++A D+               +P+D++   
Sbjct: 329 VAVDTETDGLDPLTC----------RLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREV 378

Query: 59  --QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
               L    V+ V  N  F+  + ++  G+  P   +  T V A          +L    
Sbjct: 379 LSPLLVSTEVVKVGQNLKFDYHVLRRW-GVR-PEGPFFDTMVAAWLLESDAGRYNLDRLA 436

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L +     K    K   +       ++  Y    A+                    E
Sbjct: 437 EKYLGWRTIHYKDVVEKGA-SFETVPVAEAGVYAAEDAD-----IALRLSRVLKERLEAE 490

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              R+    + E  L  +   + + G  +D + +      + +    ++++I +L     
Sbjct: 491 GLGRVF--YEMEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIFELVGHEF 548

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   T  L+  LF+  G+  V  ++    T  S+L            +L   + +    
Sbjct: 549 -NVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYRSLTKLKN 607

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V+   GRL       G + TGR S      QN+P                 
Sbjct: 608 TYVDVLPGLVNPGTGRLHTWFSQVG-TATGRLSSKDPNLQNIP----------------- 649

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +   G   + AD + IE  +LA ++ +    +AF  GED+
Sbjct: 650 -------IKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDV 702

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T +  F  P + V+ EQR I K +   + Y               L + +       
Sbjct: 703 HRATGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMS-----AFRLSRELGIPRKEAERFI 757

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            + F  +    +       +  E      L G    L     R K Q             
Sbjct: 758 DAYFTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKT--------GAE 809

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
              V      S   +                       +L   D+      +  A+    
Sbjct: 810 RIAVNTPIQGSGADII----------------------KLAMIDLDAQMRRMGLASR--- 844

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                                    M           L VHDE++ E P      +  L 
Sbjct: 845 -------------------------MI----------LQVHDELIFEVPPEELEVMKRLV 869

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
              M         +PL+ E    + +
Sbjct: 870 RERMEGVVR--LSVPLRVEMGVGRNW 893


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/727 (14%), Positives = 200/727 (27%), Gaps = 189/727 (25%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTE----- 49
            +  D ET S            A QA +   + A  D                        
Sbjct: 418  VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467

Query: 50   --------QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                     + +P       L   L DE+V+ VA N  ++ +L K+     I ++ +  T
Sbjct: 468  DLLGGGLADNQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524

Query: 97   SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             +++           +       L  +    K   G                        
Sbjct: 525  MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 569

Query: 153  VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
            +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 570  LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 629

Query: 203  LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
              ++ +L   +AQ   +L+++I  +  G   +      L   LF   G+     ++    
Sbjct: 630  RQILSRLSGELAQGAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLSGGSKTKTGQW 688

Query: 259  GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L             I++    +       + L   V  + +   T     ++ T
Sbjct: 689  STSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 748

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR S      QN+P                                +R+  I++ G KL+
Sbjct: 749  GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 784

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 785  SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 844

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                              G+     +  +                               
Sbjct: 845  --------------GIIYGISAFGLANQLSIE---------------------------- 862

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               +      K +  +  G+    +                                   
Sbjct: 863  --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 901

Query: 558  VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                    RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 902  -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 945

Query: 618  TKN--------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAE 666
                          ++L VHDE++ E  D         + S+M     P+    +PL+ +
Sbjct: 946  EPALVEVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVD 1005

Query: 667  GYEAKRY 673
               A  +
Sbjct: 1006 ARAATNW 1012


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/709 (14%), Positives = 200/709 (28%), Gaps = 173/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET +   +           A I   +++             +            +
Sbjct: 357 VALDTETSALDAMR----------AQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L D     +  +  ++R +F    GI++       T + +    +  P +L +
Sbjct: 407 LARLKPWLEDARHAKLGQHIKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHNLAS 464

Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   +    +   GK    I         +                   Y   D +
Sbjct: 465 LAERHTGRTGLNYEDLCGKGVHQIPFAQVSVDKAA-----------------TYACEDSD 507

Query: 169 ATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            T E+ + L PL           + E         +   G  ID  L+ +    + Q   
Sbjct: 508 QTLEVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRIL 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274
           +L+ +  ++      +      L    F   G+ +V  +      T + +L         
Sbjct: 568 RLETEAYEIAGQPF-NLNSPKQLGEIFFDKLGMPVVRKTTTGARSTNEEVLEKLAADYPL 626

Query: 275 KDLILNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              +L   + S       + L   A+   GR+        A  TGR S      QN+P  
Sbjct: 627 PARLLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYAQAVA-VTGRLSSSDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G+ +  AD + IE R++A I+
Sbjct: 684 ----------------------VRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAHIS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF +G D++  T A+ F  P+ +VS EQ                         
Sbjct: 722 GDPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQ------------------------- 756

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                + +  +  L         A    L   A +   + +  +
Sbjct: 757 -------------------RRYAKVINFGLIYGMSSFGLAKNLGLDRQAAKNYIQRYFER 797

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV Q  ++       +                                  RRL+  ++
Sbjct: 798 YPGVRQYMEETKARAKSLGYVETVF--------------------------GRRLMLPEI 831

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                    A  +               +Q  + D++ + M               +++ 
Sbjct: 832 NSPNGPRRAAAERAA---------INAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQ 882

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE+V E P+     +   +  LM      A  +PL AE      + K
Sbjct: 883 VHDELVFELPENAVDWLRAEVPRLMAGVA--ALRVPLLAEVGVGGNWDK 929


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 86/692 (12%), Positives = 188/692 (27%), Gaps = 143/692 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57
               +D ET    P+           A +   ++++ +           +     + +  
Sbjct: 359 KFFSLDTETTGIDPIT----------AELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +   + +  N  ++ I+     G+ +  K +  T +        L   +      
Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANY-GVTLKGKMF-DTMIAHYVLQPELRHGMDYLAEI 466

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +     +   G     +      D  P    +     A          + E      
Sbjct: 467 YLKYETIKIEELIG--AKGKKQGNMRDLAPEAVYKYACEDADVTLKLKQVLENELETNGV 524

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K+L    + E  L  +   +   G RID + + +          +++E++ +L      +
Sbjct: 525 KKLFE--EIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQLAGMEF-N 581

Query: 235 SRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 +   LF    I +    ++     T + +L            IL          
Sbjct: 582 IASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLG 641

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L + ++   GR+  +      + TGR S      QN+P                 
Sbjct: 642 TYIDALPQLINPATGRIHTSFNQTV-TATGRLSSSNPNLQNIP----------------- 683

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   I   G +   AD + IE R++A ++ +   I+AF   +DI
Sbjct: 684 -------IRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEAFQKDQDI 736

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T AK +   +++V++EQR+  K     +                G+ +   ++ +  
Sbjct: 737 HAATAAKIYKVKLEEVTREQRSKAKTANFGII--------------YGISVFGLAERLNV 782

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                              + +   +   +  V        +  
Sbjct: 783 D------------------------------RKEAKALIDGYFENYPNVKAYMDQSIQEA 812

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                          I     R+    D+    + +     +  
Sbjct: 813 REKGY--------------------------IETIFKRKRYLPDINSKNAVVRGYAERN- 845

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
                        +Q  + DI+   M    +          ++L VHDE+          
Sbjct: 846 --------AINAPIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKE 897

Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  +  S M     +    PL+A+      +
Sbjct: 898 KVQQIVISEMEAA--YKMKAPLRADHGWGHNW 927


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/710 (14%), Positives = 202/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +   +           +            
Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L D +++ +  N  ++  +F + LGI++       T +L+  
Sbjct: 396 LAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ-LGINVAP--IDDTMLLSYA 452

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L+ +    K  +  GK+ I        D+  Y    A+  ++ 
Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R      ++++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQLFKPQLHRVGVT--KVYETL------ERPLVPVLAAMERSGVKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L++DI +L      +      L   LF   G++     +     T   +L      
Sbjct: 565 KMAGLEDDIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDLATE 623

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 624 HDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 682

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 683 P------------------------IRSEEGRRIREAFVAEPGKALVALDYSQIELRILA 718

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF +G DI+  T ++ F  P+D+++ + R   K +               
Sbjct: 719 HIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINF------------- 765

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 766 -GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 794

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     D                                    +     R++  
Sbjct: 795 FERFPGIRTYMNDTKAFAKEHG--------------------------FVQTLFGRKIHT 828

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + S          R            +Q  + D++   M             ++L
Sbjct: 829 P----EISAKGPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPDAIKDLPATMLL 878

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E        +      +M     P     + L  +      +
Sbjct: 879 QVHDELLFEVEKGAEDDLIAAARHVMENAADPVVKLDVKLDVDAGVGASW 928


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 205/709 (28%), Gaps = 166/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL------ 57
           + +D ET     +           A +   +   +         T + +   DL      
Sbjct: 348 VAVDTETTGLNEMI----------ADLVGISLCIEPGEACYIPLTHRESATDDLFGSDAL 397

Query: 58  --------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                              D +++ +  N  ++  +F +     +       T +++   
Sbjct: 398 AEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY---GVNVVPIDDTMLMSYAM 454

Query: 104 G---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+ +    K  +  GK+ I        ++  Y    A+  ++ W
Sbjct: 455 HGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVPIDEATAYAAEDADITLRLW 514

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           +LF     +    T  +++ L      ER L  +   +   G ++D D++ ++    AQ+
Sbjct: 515 KLFKPQLHQVQVTT--VYETL------ERPLVPVLAEMEMNGIKVDRDVLSRMSNAFAQK 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272
              L+ +I +L  G   +      L   LF   G++           T   IL       
Sbjct: 567 MAGLEAEIHELA-GENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYSTGADILEDLATEH 625

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +L+    S       + L   ++ D GR+  +    GA+ TGR +      QN+P
Sbjct: 626 ELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQNIP 684

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G  LV  D + IE R+LA 
Sbjct: 685 ------------------------VRTEEGRRIRGAFIAEPGNVLVSLDYSQIELRILAH 720

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA      +AFA+G DI+  T ++ F+ P+D+++ E R   K +                
Sbjct: 721 IADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAIN--------------F 766

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A   ++     +     + 
Sbjct: 767 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 796

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  G+ +   D                                    +     R++   
Sbjct: 797 ERFPGIRRYMDDTVAFAKEHGY--------------------------VQTLFGRKIHTP 830

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627
               + +          R            +Q  + D++   M             ++L 
Sbjct: 831 ----EINAKGPHAGFSRRAAINAP------IQGTAADVIRRAMVRMPGAINGLPAKMLLQ 880

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
           VHDE++ E  +        +   +M     P+    + L A+  +   +
Sbjct: 881 VHDELLFEVAEGAVDETIGIARDVMEGAADPAVKLDIKLVADAGQGANW 929


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/703 (15%), Positives = 208/703 (29%), Gaps = 154/703 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQS-------AMPSDL 57
           D ET S  P            A +      W  E   +       +             L
Sbjct: 371 DTETDSLSP----------RDAHLVGIGCCWQGEEQAIAYIPVGHKEGDNLDLETALEGL 420

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              L  +    V  N+ F+R++F +  GI +       T +           +L +    
Sbjct: 421 RPILESDVYPKVLQNAKFDRLVF-QFQGIQLQGV-VFDTMLANYVLNPERSHNLTDLSRN 478

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L  +    K    K                         +     EYC  DV  T +L 
Sbjct: 479 YLQITAKSYKELVKKGQ------------------TIADLSITQVAEYCGLDVFTTYQLR 520

Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           ++L               + E  L  +   +   G RID + +  L   +  + ++L+  
Sbjct: 521 EKLEAELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLEADLQRLEAG 580

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLI 278
             +L  G I +      L   LF    +D+    +      T  + L          D++
Sbjct: 581 AYELA-GEIFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQGDHPIIDVL 639

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     +      ++ L   V  D  R+         + TGR S      QN+P      
Sbjct: 640 LEYRTLAKLKSTYVDALPMLVRDDTHRIHTDFNQAV-TATGRLSSSNPNLQNIP------ 692

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                  S  +R+  I  +   L+ AD + IE R+LA ++ E  
Sbjct: 693 ------------------IRTEFSRQIRAAFIPESSWILMAADYSQIELRILAHLSQEPR 734

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++A+ NG+D++  T         D+++ E+R + K++   + Y  G   F   A     
Sbjct: 735 LLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFAREA----- 787

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            ++           ++ + +  ++   M+ +       + ++G        +     +G+
Sbjct: 788 GVKYSEAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGRRRYFEFDS-----RGL 842

Query: 518 LQLW-KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
            +   K L E                                              V   
Sbjct: 843 KKYRGKALEELAE-------------------------------------------VDLS 859

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEI 632
              +++    L+R            +Q  S D++   M             +++ VHDE+
Sbjct: 860 DIKMSSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRLLMQVHDEL 913

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           V E P      V   + + M         +PL AE +    + 
Sbjct: 914 VLEVPVDEVDDVRSQIKTTMETALP--LSIPLVAEVHTGANWM 954


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/692 (13%), Positives = 197/692 (28%), Gaps = 145/692 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
            L ID ET   +P+          +A +   +++  +             E   + ++L 
Sbjct: 382 ILSIDTETTGTEPM----------EAELVGMSFSDAENKGYYVPVPPNREEALKIINELR 431

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  + V  N  ++ I+ +   G+ +       T +        L  ++       
Sbjct: 432 PLYENEKSLKVGQNIKYDMIVLQNY-GVQVRG-ALFDTMLAHYVLQPELRHNMDYLAEIY 489

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L++         G K    +  +       Y     +              + E   +  
Sbjct: 490 LHYQTIHIDELIGAKGKNQKNMRDLPAEDVYRYACEDADI---TLKLKNVLEKELKEQGA 546

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L    + E  L  +   I   G R+D + + +  E      ++++++I +L  G   +
Sbjct: 547 EHLF--YEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELA-GETFN 603

Query: 235 SRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 +   LF    I +    ++     T + +L            IL          
Sbjct: 604 IGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILEYRGLKKLLS 663

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L + ++S  GR+  +      + TGR S      QN+P                 
Sbjct: 664 TYIDALPQLINSRTGRIHTSFNQAV-TSTGRLSSSNPNLQNIP----------------- 705

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   I  +G +   AD + IE R++A ++ +   I AF +G DI
Sbjct: 706 -------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDI 758

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T AK +   I++V+ + R   K                      G+ +   ++    
Sbjct: 759 HAATAAKIYKIDIEEVTSDMRRKAKTANF--------------GIIYGISVFGLAER--- 801

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                        +     + +   +   +  V +      +  
Sbjct: 802 ---------------------------LNVSRQEAKELIDGYFETYPQVKEYMDKSIQVA 834

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                R+    D+    + +        
Sbjct: 835 RENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---E 865

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642
           R            +Q  + DI+   M +        K    ++L VHDE+    P +   
Sbjct: 866 RNAINAP------IQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNFSVPASEKE 919

Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  +    M     +   +PLKA+      +
Sbjct: 920 LVQQIVIEEMEHA--YRMHVPLKADCGWGNNW 949


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 193/708 (27%), Gaps = 173/708 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A I   + + +                        + 
Sbjct: 374 ALDTETTSLDEMR----------AEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVL 423

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNA 112
             L  +L D     +  +  ++R +F    GI++       T + +       P  L + 
Sbjct: 424 QRLKPWLEDAARPKLGQHVKYDRHVFANA-GIEVHGY-VHDTMLQSYVLEVHRPHGLASL 481

Query: 113 CLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            L   N +    +   GK    I         +                   Y   D + 
Sbjct: 482 ALRHTNRTGISYEDLCGKGAHQIPFAQVPVDKAAA-----------------YACEDADQ 524

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T ++ + L P            + E         I   G  ID   + +    + Q   +
Sbjct: 525 TLDVHRVLWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQ 584

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L+++   +      +      L    F   G+ +V  +      T + +L          
Sbjct: 585 LEQEAYDIAGQPF-NLASPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLP 643

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             +L   + S       + L++      GR+        A  TGR S      QN+P   
Sbjct: 644 AKLLEHRSLSKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP--- 699

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   IA+ G  +  AD + IE R++A ++G
Sbjct: 700 ---------------------IRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSG 738

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  ++AF  G D++  T ++ FN  +++VS EQ                          
Sbjct: 739 DESLLRAFHEGRDVHRATASEVFNVELEQVSSEQ-------------------------- 772

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               + +  +  L         A    +   A       +  ++
Sbjct: 773 ------------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDRYFQRY 814

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV +   +  E                                       RRL   D+ 
Sbjct: 815 PGVKRYMDETVEFARDHGYVETVF--------------------------GRRLYLVDIN 848

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTV 628
           G             R+           +Q  + D++ + M               +++ V
Sbjct: 849 GGS---GPRKKAAERQAINAP------MQGTAADLIKKAMVAVQAELDARQSEVRVIMQV 899

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           HDE+V E P+     V   +  LM         +PL AE      + K
Sbjct: 900 HDELVFELPEGESDWVRTEIPRLMAGVAD--LKVPLLAEVGLGPNWDK 945


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 93/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +             E   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E V+ V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     + Y               +++ +      
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q + +     D        + + G    L           +      +   
Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYL---------PDINSRNSVVRGY 881

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            ++
Sbjct: 882 AERNA----------------------------------------INAPIQGGAADIIKV 901

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y    +E+         +   M           L VHDE+           V  +
Sbjct: 902 AMVRIYQRFQSES---------IKSKMI----------LQVHDELNFSVLPEEKEKVQKI 942

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M     +   +PL+A+      +
Sbjct: 943 VIEEMENA--YRMQVPLRADCGWGSNW 967


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 93/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56
            ++  +D ET    P+           A +   ++++ +             E   + ++
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114
                  E V+ V  N  ++ ++     G ++       T V        L  ++     
Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L++     +   G     +  K   D  P    +     A          + E     
Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G R+D + + +  E       +++E++ +L      
Sbjct: 564 AEKLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620

Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF                  T + +L            IL         
Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   G++  +      + TGR S      QN+P                
Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +G +   AD + IE R++A ++G+   I+AF  G+D
Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDD 775

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   IDKV++EQR+  K     + Y               +++ +      
Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q + +     D        + + G    L           +      +   
Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYL---------PDINSRNSVVRGY 881

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            ++
Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKV 901

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y    +E+         +   M           L VHDE+           V  +
Sbjct: 902 AMVRIYQRFQSES---------IKSKMI----------LQVHDELNFSVLPEEKEKVQKI 942

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M     +   +PL+A+      +
Sbjct: 943 VIEEMENA--YRMQVPLRADCGWGSNW 967


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 155/700 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +  +D ET S               A I   ++A                          
Sbjct: 350 RFAVDTETTSLD----------YRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQF 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
           +   L   L +  +  +  +  ++  +F    GI +    +  T + +           +
Sbjct: 400 VLDILKPILENPAIGKIGQHMKYDAHVFNNH-GISLAGWAF-DTMLASYVLNPTATRHGM 457

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     LN++    +   GK                     +    W+L+  + K   +
Sbjct: 458 DDLAQYYLNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLYEHFSKELAK 517

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               L + L    D E     +   + + G R+D+  + +L +    +   L+   ++L 
Sbjct: 518 IP-RLERLL---LDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELA 573

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L   LF   GI     +      T ++IL   +        IL   + 
Sbjct: 574 GQPF-NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHP--IIATILEYRSL 630

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S       ++L         R+  +     A  TGR S      QN+P            
Sbjct: 631 SKLKSTYTDSLIAQSDPATQRVHTSYHQAIA-ATGRLSSTDPNLQNIP------------ 677

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G     +R   IA  G+ ++ AD + IE R++A  + ++  +KAF 
Sbjct: 678 ------------IRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFR 725

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +G DI+  T A+     ++ V+ +QR   K +                    G+      
Sbjct: 726 DGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLYGMS----- 766

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A +  L     +     + +++  V    ++
Sbjct: 767 -------------------------AFGLAKQLNLSRAEAQEYITLYFSRYPSVHDYMEN 801

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                A        +                           RRL   +++   + +  A
Sbjct: 802 TRALAAEQGYVETVL--------------------------GRRLYMENIRAGNAMVRQA 835

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDT 639
                R             Q  + DI+   M +      K    ++L VHDE+V E  + 
Sbjct: 836 A---ERAAINAPL------QGSAADIIKLAMISVDQSLPKEHAKMLLQVHDELVFEVDED 886

Query: 640 PYFSV-GTLCSLMTKNPSWAKG-----LPLKAEGYEAKRY 673
               V   L  LM   P+  +G     +PL+ E      +
Sbjct: 887 KADEVTALLKKLM---PAVLQGRADIAVPLEIEVGRGVNW 923


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/700 (16%), Positives = 190/700 (27%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + ID ET S  P+           A I   ++A                          +
Sbjct: 359 VAIDTETDSLDPMR----------ARIIGISFAVQPLEAAYVPVGHDYPGAPDQLPLDEV 408

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            + L  +L D     V  N  ++  +F    G+ +       T + +       P  L +
Sbjct: 409 LARLRPWLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYA-HDTMLESYVLEAHKPHGLAS 466

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A      Y   D E T
Sbjct: 467 LADRHLGRSGINYEDLCGKGAGQ---------------IPFSHVAVDQASTYSGEDSEMT 511

Query: 171 RELFKRLIPLSDGERDL-----------WLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++ + L P  + E  L             +   I   G  ID  ++ +    +AQ    
Sbjct: 512 LQVHQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHT 571

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275
           L+++   +      +      +   LF   G+ +   +      T + +L          
Sbjct: 572 LEQEAHAIAGQPF-NMSSPKQIGEILFTKLGLPVKKKTASGAPSTDEEVLQELAADYPLP 630

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             IL   + +       + L   V+   GR+        A  TGR S      QN+P   
Sbjct: 631 ARILEHRSLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVA-ITGRLSSNDPNLQNIP--- 686

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   +A+ G KLV AD + IE R++A I+G
Sbjct: 687 ---------------------IRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISG 725

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +KAFA+G D++  T A+ FN     V+ EQR   K +   L Y  G          
Sbjct: 726 DANLLKAFADGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMG-----AFGLA 780

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L ++Q +        F  +   + +    +    +    + L G    L         
Sbjct: 781 ASLGIEQKAARDYIERYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVL--------- 831

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +                                                 +L    V+
Sbjct: 832 PEIKGGNGPRKAAAERQAINAPMQGTAADLI---------------------KLAMIAVQ 870

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                   A+                             M           + VHDE+V 
Sbjct: 871 KAIDDEGRASK----------------------------MI----------MQVHDELVL 892

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+         L  LM         +PL AE  E   +
Sbjct: 893 EVPEAELGWAREALPRLMAGVAQ--LKVPLVAEVGEGANW 930


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 89/539 (16%), Positives = 161/539 (29%), Gaps = 88/539 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y            
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              L++ +          FE +     +    + Q  E    + L G    L       
Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSN 832


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/717 (14%), Positives = 201/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  +     +   K +
Sbjct: 785 -GLLYGMS------------------------------AFGLAKQIGVDRAVAQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/713 (16%), Positives = 212/713 (29%), Gaps = 169/713 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL----- 57
               + ET S  P+          QA +   + A   E               DL     
Sbjct: 380 FFAFNTETTSLDPM----------QAKLVGFSLALQPEKAAYIPLEHFDEGEEDLLRGGH 429

Query: 58  --------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                            L D +V+ +  N  ++ ++ K+    DI    +  T +L+   
Sbjct: 430 IASQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAF 486

Query: 104 G---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAW 156
               L  ++ +     L       K     GK + +        +  Y   RA+  ++ W
Sbjct: 487 DAGILTHNMDDLSERWLKHKPISYKDLTHNGKKITSFAQVDLKQATLYAAERADITLRLW 546

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q+             ++++RL      +R L  +   + +RG  ID  ++L+L   +AQ 
Sbjct: 547 QVLKPQLVARGMT--KIYERL------DRPLVEVLARMEERGILIDRQILLRLSGELAQA 598

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NI 270
              L+E+I K  D    +      L   LF   G+     ++     T    L       
Sbjct: 599 ALILEEEIYKQADEKF-NLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTLEELAAEG 657

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             L + +I  R   +       + L   + S  GR+         + TGR S      QN
Sbjct: 658 HVLPRKIIEWRQ-LAKLKSTYTDALPSYIFSKTGRVHTNYSLA-ITSTGRLSSSEPNLQN 715

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R+  IA  G  L+ AD + IE R+L
Sbjct: 716 IP------------------------VRTAEGRKIRTAFIAPKGHVLLSADYSQIELRIL 751

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A IA      +AFA G DI+  T ++ F   I+ +  + R   K +              
Sbjct: 752 AHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINF------------ 799

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G+                                   A +  +         + 
Sbjct: 800 --GIIYGIS------------------------------AFGLANQLGISRQEAGRYIQL 827

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +  +  G+    +                                           RR+ 
Sbjct: 828 YFERFPGIKDYMEKTKIFARENGYVETIF--------------------------GRRIH 861

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYD 623
           Y ++K     + +      R            +Q  + DI+   M          K    
Sbjct: 862 YPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMENALKEEKLSAK 912

Query: 624 IVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           ++L VHDE++ E P+     ++  + ++M     P  +  +PL+ +   A+ +
Sbjct: 913 MLLQVHDELIFEVPEEESKKTMAVVKNVMENATMPILSLSVPLEVKVMTAQNW 965


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/596 (29%), Positives = 265/596 (44%), Gaps = 69/596 (11%)

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHV 153
            V     GLP+SL     AL  ++   K  EGKALI  FC   K +  +         H 
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHA 58

Query: 154 -QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            + W  F EYC++DV   R + K++   P  + E+  W LDQ I D+G RID+DLV    
Sbjct: 59  SEKWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAI 118

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
               + +  L +    LT     +      L+ +L    G  +  +++ ++  +L+  ++
Sbjct: 119 ACQERYQASLSKKAKGLTGLE--NPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDL 175

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            +  ++++L R   S ++I K   +  A   DGR+RG LQF GA+RTGRW+G + Q QNL
Sbjct: 176 DEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNL 235

Query: 331 PRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PR    +    +        E       +   + S  +R+  IA +G    + D + IEA
Sbjct: 236 PRNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEA 295

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RV+AW+AGE W++  F +   IY  + ++ F+ PI++V K  R  GKV ELALGY GG  
Sbjct: 296 RVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVN 355

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
               M                                         A++  L     + +
Sbjct: 356 ALIAMG----------------------------------------ALEMGLKENELQGI 375

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWR     +  LW+ + +           IS R+      L        + I LPS R
Sbjct: 376 VDAWRKASPAITSLWRGVEKHAKLA------ISTRKSQKYKGLTFYYEAGILFIKLPSGR 429

Query: 567 RLVYSDVK-------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
            L Y   K           Y         ++ TYGGKL ENIVQAI+RD L   ++    
Sbjct: 430 NLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIED 489

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            G D V+ VHDE ++E  ++   SV  L +++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 490 TGIDTVMHVHDEAITEVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/692 (15%), Positives = 204/692 (29%), Gaps = 133/692 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTE-------QSAMPSDL 57
           D ET S +P            A +      W ++   +              + A+   L
Sbjct: 387 DTETTSLEP----------RNAELVGIGCCWGEKSTDIAYIPTGHNKGNQLKKEAVLQAL 436

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L  +    V  N+ F+R++F    GI++       T + +         +L + C  
Sbjct: 437 KPILESDRYPKVFQNTKFDRLIF-YHQGINLKGV-VFDTLLASYVLHPEMSHNLSDLCYR 494

Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                +    K            K               + A+  F    K       + 
Sbjct: 495 YLSGITSQSYKELAIPK-----GKTIASLDIETVANYCGLDAYATFLLVSKLKQ--ELKS 547

Query: 174 FKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           F  L  L  + E+ L  +   + D G RID D + +L + + Q+   +++   +   G I
Sbjct: 548 FPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQEA-GEI 606

Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L   LF    ++            T  + L          D IL+    S  
Sbjct: 607 FNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLQGDHPIIDHILDYRTLSKL 666

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++ L   V  D +   T      + TGR S      QN+P                
Sbjct: 667 KSTYVDALPALVRPDTQRVHTNFNQTVTATGRLSSSNPNLQNIP---------------- 710

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   I      LV AD + IE R+LA ++ E   ++A+ N +D
Sbjct: 711 --------IRTEFSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQEVVLLEAYRNNQD 762

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T    F+   + ++ ++R +GK +   + Y  GA+ F   A      +        
Sbjct: 763 VHSVTAKLLFDK--ETITPQERNLGKTINFGVIYGMGAQRFAREA-----GVSAAEGKTF 815

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                + + +   +   M+ +         ++G                           
Sbjct: 816 INKYRQRYAKVFDYLERMKKEAIADGFVTTILGRRRY---------------FNFITESL 860

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                 +                                      +  +   +N A +QL
Sbjct: 861 QKLKGSDPE-----------------------------------KINLEVLNINYADAQL 885

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643
           +R            +Q  S DI+   M    +        ++L VHDE+V E P   +  
Sbjct: 886 LRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQVHDELVFEIPLNEWEE 939

Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +   +   M    +    +PL  E +    + 
Sbjct: 940 LQTKIKETMENAVT--LTVPLVVEIHSGNNWM 969


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 204/709 (28%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +           A +   ++A  +                       +
Sbjct: 313 FAFDTETDSLDYMV----------ANLVGMSFAVAEGEAAYIPVAHDYLDAPQQLDRAWV 362

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 363 IAQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 420

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +    Q   +Y   D + 
Sbjct: 421 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 465

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L +R+ PL +            E  L  +   I   G  ID  L+    + IA    
Sbjct: 466 TLRLHQRISPLIEQDSKLAQVYSEIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 525

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L++   +L  G   +      L+  LF    +         +  T + +L    +    
Sbjct: 526 ELEQKAYELA-GQSFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 584

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +++     +       + L + ++ + GR+  +      + TGR S      QN+P  
Sbjct: 585 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 641

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A +G K++  D + IE R++A ++
Sbjct: 642 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 679

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF  G+DI+  T A+    PI++VS EQR   K +                  
Sbjct: 680 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 725

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +     +     +  +
Sbjct: 726 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 755

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV+Q  +D     A +                                  RRL     
Sbjct: 756 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 787

Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
             + +  N    +   R            +Q  + DI+ + M    +           ++
Sbjct: 788 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 839

Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V      +       +  LM      A  +PL AE      +
Sbjct: 840 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 193/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 346 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +      I +       T + +          + + 
Sbjct: 396 ARLKPWLESADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVVESHRTHDMDSL 453

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID   +      IA    +L
Sbjct: 499 QLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIEL 558

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           + +  +L  G   +      +    F    +         +  T + +L           
Sbjct: 559 EGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 618 LLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 672

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+G+
Sbjct: 673 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 712

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+                    
Sbjct: 713 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 758

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A +L    + A++ 
Sbjct: 759 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 788

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q  +D                                          RRL   ++ G
Sbjct: 789 GVAQYMEDTRATAKEKGYVETVF--------------------------GRRLWLPEING 822

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                  A     R            +Q  + D++   M          +    +++ VH
Sbjct: 823 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVH 873

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P+     V   L  +M         +PL AE      +
Sbjct: 874 DELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 198/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 357 FAFDTETDGLDTL----------SANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE  + V  N  F++ L  +  GI++    +  T + +           + 
Sbjct: 407 LTTLKPLLEDEQALKVGQNLKFDKSLLARY-GIELRGIAF-DTMLESYVLNSVAGRHDMD 464

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +    Y   D + 
Sbjct: 465 SLSERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQASPYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   + P               E  L  +   I   G  ID  ++    + +     
Sbjct: 510 TLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQSILATHSQELTIRLT 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 570 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             ++L     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVLLEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 686 ----------------------VRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y            
Sbjct: 724 QDKGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMS-----AFGL 778

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  +      L G    L     R  
Sbjct: 779 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 838

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 839 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ------------------ 875

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 876 --------------------AEPLVRVIMQ-------------VHDE---LVFEVH---- 895

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S   T+C LM ++      +PLK E    K +
Sbjct: 896 ----ESVVESATQTICDLMEQSMQ--LDVPLKVEVGVGKNW 930


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/705 (16%), Positives = 202/705 (28%), Gaps = 170/705 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +          QA +   + A             +            +
Sbjct: 375 VAVDTETTSLDEM----------QAKLVGLSMAVAPGVACYIPVAHRGPDGATQLPKDEV 424

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
            + L  +L D +   + H++ ++  +F    GI +       T + A          L +
Sbjct: 425 LARLRPWLEDASRAKLLHHAKYDTHVFAN-EGIRLAGIA-EDTMLQAYVLESHRGVGLND 482

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A    G Y   D + T
Sbjct: 483 LAQRYLGRSGVSYEDLCGKGAKQIG---------------FDEVAVDKAGHYAAEDADFT 527

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L + L P              E  +  +  TI   G ++D   + +    + QE  +L
Sbjct: 528 LQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQEMLQL 587

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF    + +V  +      T + +LS          
Sbjct: 588 EQKAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 646

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   ++ D GR+        A  TGR +      QN+P    
Sbjct: 647 VLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 701

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   IA  G  L+ AD + IE R++A ++ +
Sbjct: 702 --------------------VRTEAGRRVREAFIAEQG-LLLSADYSQIELRIMAHVSDD 740

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AFA GEDI+  T ++ F   +  VS EQR   K +                    
Sbjct: 741 ANLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINF--------------GLIY 786

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+ +   + N                                +   A +     + A++ 
Sbjct: 787 GMGVFGLASN------------------------------LGITRDAAQAYIDRYFARYP 816

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    ++                                          RRL   +++G
Sbjct: 817 GVAMYMENTRRVAREQGYVETVF--------------------------GRRLQLPEIRG 850

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                        R            +Q  + D++   M          K    +++ VH
Sbjct: 851 ASGPRRQGA---ERAAINAP------MQGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVH 901

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  LM         +PL AE    K +
Sbjct: 902 DELVLEAPDAELELVKQTLPRLMCNVAE--LRVPLVAEVGVGKNW 944


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 782 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 810

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/707 (15%), Positives = 208/707 (29%), Gaps = 169/707 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAMPS 55
           + ID+ET S  P           +A I   + A  D                 ++  +  
Sbjct: 324 ISIDLETSSLDP----------HEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLL 373

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
            L + L D     V  N  F+  + +K  GI+ P      T + A          +L + 
Sbjct: 374 RLKELLEDSGTKIVGQNLKFDYEILEKH-GIE-PVVPHFDTMIAAYLLNPDSRRFNLDDL 431

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L +          K  +                      + +   +Y   D +   
Sbjct: 432 ALKFLGYRTTSFSELMNKNQLK---------------DQFEKVSVEEAAKYSVEDADIAL 476

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L++ L                E +L  +   +   G  ++++ +  L E   +   K+ 
Sbjct: 477 RLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGKIR 536

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           E++ +L      +      +   LF   G++    ++     T  ++L            
Sbjct: 537 EELFELAGEPF-NPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPIIQK 595

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L+           L+TL   V+   GR+  +    G + TGR S      QNLP     
Sbjct: 596 LLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTG-TGTGRLSSSNPNMQNLP----- 649

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395
                                G     +R C++      K++ AD + IE RVLA  + +
Sbjct: 650 -------------------IKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFSED 690

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  I AF NGED++  T ++ +   +  V+ E R +GK++  ++ Y              
Sbjct: 691 ERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISP---------Y 741

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           GL                                   A + K+     E +   +   + 
Sbjct: 742 GL-----------------------------------ARRLKIKTHIAENMISNYFNAYP 766

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV +   ++                +R     R   +                       
Sbjct: 767 GVRKFINEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMK--------------------- 805

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629
                     +  R            +Q  + DI+   M    K           +L VH
Sbjct: 806 --------IQEGERIAI------NTPIQGTAADIMKLAMIKIHKMVKEEGLEAFPILQVH 851

Query: 630 DEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYRK 675
           DE+V E P T    V  + +  M+        +PL+ +      + K
Sbjct: 852 DELVFEAPATEVDRVCDILTRGMSGVVE--LKVPLEVDVAVNSYWGK 896


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 782 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 810

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A  +   Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDVASHYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/701 (16%), Positives = 206/701 (29%), Gaps = 154/701 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAMPSD-----L 57
           D ET    P            A +     AW +EP  +            +P       L
Sbjct: 382 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 431

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115
              L  +       N+ F+R++  +  GI++       T + +         SL      
Sbjct: 432 RPILESDRHPKALQNAKFDRLIL-RHQGIELAGV-VFDTMLASYLLNPSLGHSLDALADR 489

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L            K                   +     A     +YC  DV   + L 
Sbjct: 490 WLKLQTRSYSDLVPKG------------------KTIAQVAIAAVAQYCGSDVHVVQRLI 531

Query: 175 KRLI------PLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L       P         E  L  +   + DRG RID   + +L E +  E  +L+  
Sbjct: 532 PLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEG- 590

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLI 278
                 G   +      L   LF   G+++           T  ++L          DLI
Sbjct: 591 AAHTLAGDRFNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLI 650

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L     +      ++ L   V++DGR+         + TGR S      QN+P       
Sbjct: 651 LEHCTLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIP------- 702

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                 S  +R   +   G  L  AD + IE R+LA ++ E   
Sbjct: 703 -----------------IRTEFSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 745

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++A+  G+D++  T +  F    ++++ E+R IGK++   + Y  GA+ F          
Sbjct: 746 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 798

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                        ++ + +  ++   ++ Q       + ++G       +          
Sbjct: 799 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFDFED--------- 849

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                                         L   R      I L   R   +        
Sbjct: 850 ----------------------------TGLQKLRGSDPESIDLDKIRPSRF-------- 873

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVS 634
                 +QL+R            +Q  S DI+   M             ++L VHDE+V 
Sbjct: 874 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 922

Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E P   + S+   +   M +       +PL  E +    + 
Sbjct: 923 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 961


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
              D ET S   +           A +   ++A +                   +P +  
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V+ V  N  ++R +      I++    +  T + +           + 
Sbjct: 404 LTLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   
Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y            
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V   +  LM  + + A  +PL  E    + +
Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 193/706 (27%), Gaps = 171/706 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
              ID ET +         +  A    +   + A+D                        
Sbjct: 348 HFAIDTETTNLD-------YRVA---ELVGFSIAFDANEAYYVPLAHDYEGAPEQLSREQ 397

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
           + + +   L +E V  + H+  ++  +F    GI I    +  T + +           +
Sbjct: 398 VLAQIKPILENEQVKKIGHHLKYDAHIFANH-GIIIQGW-YFDTMLASYVLNAAATRHGM 455

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      +   GK                   +  +    ++   Y   D  
Sbjct: 456 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIELEVAAHYAAEDAH 500

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L++ L                 E  +  +   + + G ++D   + +L    +   
Sbjct: 501 VTYRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTM 560

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
           + L+    +L  G   +      +   LF   GI     +      T +SIL        
Sbjct: 561 QTLENQATELA-GETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEKIEHP-- 617

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPR 332
             ++IL     +       + L E  S D   R    ++ A + TGR S      QN+P 
Sbjct: 618 LAEVILEHRGLAKLKNTYTDRLVEQ-SHDATHRVHTSYHQALTATGRLSSTDPNLQNIP- 675

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G+ L+ AD + IE R++A  
Sbjct: 676 -----------------------IRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHF 712

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +D  + AF  G+D++  T A+     I+ V+ +QR   K +                 
Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNF--------------G 758

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+     +                               +              +  
Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFTREESRSYIARYFQ 788

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL   +   +                                 +     RRL   D
Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628
           +      +  A     R             Q  + DI+   M        K+   ++L V
Sbjct: 823 ILATNKMIKQAA---ERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E        +   +  +M         +P   E  +   +
Sbjct: 874 HDELVFEADVAIADELSKQIADVMQSVLE--ISVPFVVEVGQGLNW 917


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
              D ET S   +           A +   ++A +                   +P +  
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V+ V  N  ++R +      I++    +  T + +           + 
Sbjct: 404 LTLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   
Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y            
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V   +  LM  + + A  +PL  E    + +
Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/696 (15%), Positives = 197/696 (28%), Gaps = 152/696 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   + + +           +            + 
Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 389 ARLKPWLESVEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446

Query: 113 C-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L       +   GK    I         +  Y    A+          Y +   E 
Sbjct: 447 ALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV-LYPQVAAEK 505

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +         D E     + + +   G  ID + + +    IA    +L+ +   L  
Sbjct: 506 TLQYVYH-----DIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAG 560

Query: 230 GIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           G   +      +    F    +         +  T + +L           ++L     S
Sbjct: 561 GEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEHRGLS 619

Query: 286 GSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  + L   V+ + GR+        A  TGR +      QN+P             
Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYAQAVA-VTGRLASNDPNLQNIP------------- 665

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KLV AD + IE R++A I+G++  +++F+ 
Sbjct: 666 -----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQ 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GEDI+  T A+ F+    +VS +QR + KV+                    G+     + 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLAS 760

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           N+                               +   A +L    + A++ GV +   + 
Sbjct: 761 NL------------------------------GITRDAAKLYIDRYFARYPGVARYMDET 790

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                    RRL   ++ G       A 
Sbjct: 791 RVSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA 824

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
               R            +Q  + D++   M    K       G  +++ VHDE++ E PD
Sbjct: 825 ---ERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPD 875

Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                V   L  LM         +PL AE      +
Sbjct: 876 AELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/727 (14%), Positives = 199/727 (27%), Gaps = 189/727 (25%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQS--- 51
            +  D ET S            A QA +   + A  D                   ++   
Sbjct: 418  VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467

Query: 52   ----------AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                       +P       L   L DE V+ VA N  ++ +L K+     I ++ +  T
Sbjct: 468  DLLGGGLAENQIPMRDALPRLKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524

Query: 97   SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             +++           +       L  +    K   G                        
Sbjct: 525  MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 569

Query: 153  VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
            +        Y   D E T  L+  L P              ER L  +   +  RG  +D
Sbjct: 570  LVDIDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 629

Query: 203  LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
              ++ +L   +AQ   +L+++I  +  G   +      L   LF   G+     ++    
Sbjct: 630  RQILSRLSGELAQSAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLSGGSKTKTGQW 688

Query: 259  GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L             I++    +       + L   V  + +   T     ++ T
Sbjct: 689  STSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 748

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR S      QN+P                                +R+  I++   KL+
Sbjct: 749  GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPRHKLI 784

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 785  SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 844

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                              G+     +  +                               
Sbjct: 845  --------------GIIYGISAFGLANQLSIE---------------------------- 862

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               +      K +  +  G+    +                                   
Sbjct: 863  --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 901

Query: 558  VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                    RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 902  -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 945

Query: 618  TKN--------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAE 666
                          ++L VHDE++ E  D         + S+M     P+    +PL+ +
Sbjct: 946  EPALVEVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVD 1005

Query: 667  GYEAKRY 673
               A  +
Sbjct: 1006 ARAATNW 1012


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/717 (15%), Positives = 189/717 (26%), Gaps = 178/717 (24%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
             +  D ET S  P+          QA +   + A                          
Sbjct: 432  FVAFDTETTSLDPM----------QADLVGVSLALAPNEACYIPLAHVGAGDGLFTEGLL 481

Query: 50   QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
               +P     + L   L D   + + HN  ++  +  +  GI +    + CT  ++    
Sbjct: 482  PGQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVLARH-GITVAP--YDCTMCMSYALD 538

Query: 105  LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                   +       L  +        GK                           +   
Sbjct: 539  AGRGGHGMDELSIKYLGHTPIAFTEVAGKGKSQ---------------ITFDRVPLEAAT 583

Query: 161  EYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQ 210
             Y   D + T  L++ L P    E          R L  +   +  RG  ID   + +L 
Sbjct: 584  AYAAEDADVTLRLWRVLKPRLPSEGMTTVYETLERPLIAVLARMEARGISIDRATLARLS 643

Query: 211  ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILS 266
               AQ   +L+++I     G   +      +   LF    +         +  T  ++L 
Sbjct: 644  SEFAQGAARLEDEI-SGLAGEKINVGSPKQIGDLLFGKMQLPGATKTPTGAWSTKANVLD 702

Query: 267  HSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                        IL     S       + L   V+       T     A+ TGR S    
Sbjct: 703  ELAEAGHELPQKILAWRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATTTGRLSSSEP 762

Query: 326  QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
              QN+P                                +R   +A  G KLV AD + IE
Sbjct: 763  NLQNIP------------------------IRTEEGRRIRRAFVAVPGTKLVSADYSQIE 798

Query: 386  ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
             R+LA IA      +AF +G DI+  T ++ F  P++ +  E R   K +          
Sbjct: 799  LRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 850

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      G+                                   A +  +       
Sbjct: 851  ------GIIYGIS------------------------------AFGLANQLGIPRDEAGQ 874

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              K +  +  G+     +                                    +     
Sbjct: 875  YIKRYFERFPGIRAYMDETRAYCREHGY--------------------------VETLFG 908

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG 621
            RR  Y D+      +        R             Q  + DI+   M          G
Sbjct: 909  RRCHYPDIAASNPSIRAF---NERAAINARL------QGTAADIIRRAMIRMEGALADAG 959

Query: 622  --YDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E PD     ++  +  +M     P+    +PL+ E   A  +
Sbjct: 960  LSARMLLQVHDELVFEVPDAEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNW 1016


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
              D ET S   +           A +   ++A +                   +P +  
Sbjct: 351 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 400

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V+ V  N  ++R +      I++    +  T + +           + 
Sbjct: 401 LALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 458

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 459 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 503

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   
Sbjct: 504 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 564 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 680 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y            
Sbjct: 718 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 772

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 773 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 824

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 825 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 875 --------------------------MIMQ-------------VHDE---LVFEVH---- 888

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V   +  LM  + + A  +PL  E    + +
Sbjct: 889 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 923


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/719 (15%), Positives = 200/719 (27%), Gaps = 164/719 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ----------- 50
           + +D ET    P            A +      W  E   +       +           
Sbjct: 391 VALDTETSDLNPFK----------AQLVGVGVCWGPELDDLAYIPVGHRPSAEPSLEDSS 440

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                    + + L  +L          N+ ++R++  +  G+ +     + T +     
Sbjct: 441 AIQQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRH-GLPL-GGVVMDTLLADYLR 498

Query: 104 GL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  L             L     GKA   +                          
Sbjct: 499 DAAAKHGLDAMAERDYGIQPTLFSDLVGKAKDGKAS-------------CFAEVEINQAA 545

Query: 161 EYCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLK 208
            YC  DV  TR L             RL+PL D  E  L  +   +   G RID   +  
Sbjct: 546 LYCGMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAA 605

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKS 263
           L   +AQ  ++L+ +  +       +      L   LF   G+D            T  +
Sbjct: 606 LSTEMAQTLERLETEAKQAAGMEF-NLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDAT 664

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322
           +L           L+L     S      ++ L + V +  GR+         + TGR S 
Sbjct: 665 VLEKLEQDHPVVPLVLEHRTLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSS 723

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                             S  +R   +   G +L+ AD +
Sbjct: 724 SNPNLQNIP------------------------VRTEFSRRIRKAFLPQAGWQLLSADYS 759

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+L  ++GE+   +A+ +G+D++  T           V+ ++R +GK +   + Y 
Sbjct: 760 QIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIYG 817

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            GA+ F          + Q       +   E + +  +     +         + ++G  
Sbjct: 818 MGAQRF-----ARETGVSQAQAKEFLSKYKERYPKVFAFLELQERLALSRGYVETILGRR 872

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                                                         L     K  + I L
Sbjct: 873 RPFHFDR-------------------------------------NGLGRLLGKDPLEIDL 895

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
             +RR                 +Q +R            +Q  S DI+   M        
Sbjct: 896 EVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALE 936

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                  ++L VHDE+V E   T    V  L  + M +       +PL  E      + 
Sbjct: 937 QQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQAIQ--LSVPLVVETGVGANWM 993


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 137/694 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQS-------AMPSDL 57
           D ET S  P+          +A +      W  +   V                 + + L
Sbjct: 381 DTETTSLDPI----------EATLVGIGCCWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L  +       N+ F+RI+     GI +       T + +          L + C  
Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLL-HQGIQLAGV-VFDTMLASYVLRPEDSHKLSDLCHR 488

Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172
              N      K  E         +   +           + A+  F    K   E  +  
Sbjct: 489 YLENIKSLNYKDLEIPK-----TQTIANLDISRVAHYCGMDAYATFKLVPKLLAELEKAP 543

Query: 173 -LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L+  L      E+ L  +   + + G RID   +    + + Q+    ++   +   G 
Sbjct: 544 DLYNLL---IKVEQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAA-GE 599

Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF    +       +     T  + L          D IL     + 
Sbjct: 600 SFNLGSPKQLSYILFDKLKLSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEHRTLAK 659

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   V    GR+         + TGR S      QN+P              
Sbjct: 660 LKSTYVDALPALVHPKTGRVHTDFNQTV-TTTGRLSSSNPNLQNIP-------------- 704

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I   G  LV AD + IE R+LA +  E   ++A+ N 
Sbjct: 705 ----------IKTEFSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLVEAYQNY 754

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D++  T    F+     ++ E+R+IGK +   + Y  GA   +  A   GL +Q+  + 
Sbjct: 755 QDVHRVTAQLLFDKA--NITSEERSIGKTINFGVIYGMGA---QRFARAFGLSVQEGKE- 808

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                  + + +   +   ++ +         ++G                         
Sbjct: 809 -FIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGRRRY--------------------- 846

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                           +    P        ++      LN + +
Sbjct: 847 ----------------------FEFFDDKLNRLRGEKP-------ENLDLKKLELNFSDA 877

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           QL+R            +Q  S DI+   M    +        ++L VHDE+V E P   +
Sbjct: 878 QLLRAAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVFEVPPHEW 931

Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             +   + + M    +    +PL  E    K + 
Sbjct: 932 EELEVKIKNTMENAVN--LTVPLVVEIRSGKNWM 963


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 193/705 (27%), Gaps = 170/705 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +      I++       T + +          + + 
Sbjct: 393 TRLKPWLESADRKKVGQHLKYDAQVLANY-DIELNGIE-HDTLLESYVVESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID   +      IA    +L
Sbjct: 496 QLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIEL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G ++V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+                    
Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 755

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +   A +L    + A++ 
Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV Q  +D                                          RRL   ++ G
Sbjct: 786 GVAQYMEDTRATAKEKGYVETVF--------------------------GRRLWLPEING 819

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                  A     R            +Q  + D++   M          +    +++ VH
Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVH 870

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P+     V   L  +M         +PL AE      +
Sbjct: 871 DELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/705 (16%), Positives = 204/705 (28%), Gaps = 170/705 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S   +          QA +   + A +           +            +
Sbjct: 332 VALDTETTSLDQM----------QARLVGLSLAVEPGVACYIPVAHRGPDGATQLPKAEV 381

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
            + L  +L D +   + H++ ++  +F    GI +       T + A          L +
Sbjct: 382 LARLKPWLEDASRAKLLHHAKYDAHVFAN-EGIALAGIT-DDTMLQAYVLESHRGVGLND 439

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A    G Y   D + T
Sbjct: 440 LAQRYLGRSGISYEDLCGKGAKQIG---------------FDEVAVDKAGHYAAEDADFT 484

Query: 171 RELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L   L P+             E  +  +  TI   G ++D + + +    + QE  +L
Sbjct: 485 LQLHHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRL 544

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF    + +V  +      T + +L+   +      
Sbjct: 545 EQKAYELAGQPF-NLNSPKQLGEILFDRMQLPVVRKTASGAPSTDEDVLTKLALDYPLPQ 603

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 604 VLLEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQA-AVITGRLASSDPNLQNIP---- 658

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   IA  G  L+ AD + IE R++A ++ +
Sbjct: 659 --------------------VRTEAGRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDD 697

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
                AFA GEDI+  T A+ F   +  VS +QR   K +                    
Sbjct: 698 ANLQSAFAAGEDIHRATAAEVFGVALADVSTDQRRAAKAINF--------------GLIY 743

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+ +   + N+                               +   A +     + A++ 
Sbjct: 744 GMGVFGLASNL------------------------------GITRDAAQAYIDRYFARYP 773

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    ++                                          RRL   +++G
Sbjct: 774 GVAMYMENTRRLAREQGYVETVF--------------------------GRRLQLPEIRG 807

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                        R            +Q  + D++   M          K    +++ VH
Sbjct: 808 ASGPRRQGA---ERAAINAP------MQGTAADLIKLAMVAVQDWLEAEKLQTRMIMQVH 858

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  LM         +PL AE    K +
Sbjct: 859 DELVLEAPDNEIEVVKEALPRLMCSVAE--LRVPLVAEVGMGKNW 901


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/696 (15%), Positives = 195/696 (28%), Gaps = 152/696 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   + + +           +            + 
Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 389 ARLKPWLESAGHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446

Query: 113 C-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L       +   GK    I         +  Y    A+          Y +   E 
Sbjct: 447 ALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV-LYPQVAAEK 505

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +         D E     + + +   G  ID + + +    IA    +L+ +   L  
Sbjct: 506 TLQYVYH-----DIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAG 560

Query: 230 GIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           G   +      +    F    +         +  T + +L           ++L     S
Sbjct: 561 GEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEHRGLS 619

Query: 286 GSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  + L   V+ + GR+        A  TGR +      QN+P             
Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYAQAVA-VTGRLASNDPNLQNIP------------- 665

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G KLV AD + IE R++A I+G++  + +F+ 
Sbjct: 666 -----------VRTGEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQ 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GEDI+  T A+ F+    +VS +QR + KV+                    G+     + 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLAS 760

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           N                                +   A +L    + A++ GV +   + 
Sbjct: 761 N------------------------------LGITRDAAKLYIDRYFARYPGVARYMDET 790

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                    RRL   ++ G       A 
Sbjct: 791 RVSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA 824

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
               R            +Q  + D++   M    K       G  +++ VHDE++ E PD
Sbjct: 825 ---ERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPD 875

Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                V   L  LM         +PL AE      +
Sbjct: 876 AELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/693 (17%), Positives = 207/693 (29%), Gaps = 135/693 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSA----MPSDLL 58
           D ET S  PL           A +     AW  EP  V                +  DLL
Sbjct: 401 DTETDSLDPLV----------ANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLL 450

Query: 59  -QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
            + L +     V  N+ F+R +     GI++     + T + +         +L + C  
Sbjct: 451 GEILGNAIYPKVLQNAKFDRRVLAHH-GIEL-GGVVLDTMLASYVLQPEETHNLTDLCRR 508

Query: 116 --LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       K    K       +   D P     +   +  +  +    K   E  +  
Sbjct: 509 YNLGLVALSYKDLGLKK-----DQTIADLPLETAGQYCGLDCYATYLLASKLQKELDQ-- 561

Query: 174 FKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +  L  +  + E+ L  +   + DRG RID D +  L + +A+    ++    +   G  
Sbjct: 562 YPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYEAA-GES 620

Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L   LF   G+D            T  + L          D IL     +  
Sbjct: 621 FNLSSPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEHRTLAKL 680

Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L E V+    R+         + TGR S      QN+P               
Sbjct: 681 KSTYVDALPELVNGQTQRIHTDFNQAV-TSTGRLSSSNPNLQNIP--------------- 724

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                         S  +R   +      LV AD + IE R+LA ++ E   ++A+ + +
Sbjct: 725 ---------IRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQAYGDRQ 775

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T    F    + ++  +R +GK +   + Y  GA+ F          +       
Sbjct: 776 DVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGAQRF-----ARETGISAVEGRE 828

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                   + Q   +   M+ +         ++G                          
Sbjct: 829 FIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRY---------------FNFVTE- 872

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                ++                                  L   DVK     +N   +Q
Sbjct: 873 -ALRQLRGKTVTE----------------------------LDLVDVK-----MNYNDAQ 898

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642
           L+R            +Q  S DI+   M    K        ++L VHDE++ E P   + 
Sbjct: 899 LLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLLQVHDELIFEMPPEEWE 952

Query: 643 SVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
            +  L    M +  +    +PL  E +    + 
Sbjct: 953 ELAPLIQNTMEQALT--LSVPLVVEMHRGSNWM 983


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 203/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFD 585

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E       ++G L    M    +       WA    +PL  E    + +
Sbjct: 899 QVHDELVFEVDTDKAHNIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 188/701 (26%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET S   L           A I   ++A                          +
Sbjct: 352 FAFDLETDSLDTL----------SANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  F+R + K+   I++   R+  T + +           + 
Sbjct: 402 LARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRF-DTMLESYALNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +  A +    Y   D + 
Sbjct: 460 TLASRWLNHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  ID  ++    + +     
Sbjct: 505 TLQLHVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +      L+  LF   GI     +      T + +L+   +    
Sbjct: 565 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y            
Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++            FE +     +    ++   +      L G    L        
Sbjct: 774 SRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                               
Sbjct: 826 -PDIKASNAMRRKAAERAAINAPMQGTA-------------------------------A 853

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                 +      L ++ +   K+   I+Q                    +V  VH    
Sbjct: 854 DIIKRAMIAVDRWLEQQPSPEVKM---IMQ-------------VHDE---LVFEVH---- 890

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +    + +LM  +      +PL+ +      +
Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 173 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 222

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 223 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 280

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 281 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 325

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 326 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 385

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L+  L+    + ++  +      T + +L+   +    
Sbjct: 386 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 444

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 445 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 501

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G  ++ AD + IE R++A ++
Sbjct: 502 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 539

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AFA G+DI+  T A+ F +P++KV+ EQR   K +   L Y            
Sbjct: 540 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 594

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L     R  
Sbjct: 595 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 654

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++      K           +G +    + A +      + +                  
Sbjct: 655 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 692

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 693 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 711

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++   S    +  LM ++   A  +PLK +      +
Sbjct: 712 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 746


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/695 (14%), Positives = 194/695 (27%), Gaps = 144/695 (20%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMP 54
           M +  +  D ET S + L           A +   A++W+           D+ E   + 
Sbjct: 366 MKQNSVCFDTETTSLKTL----------DAELVGIAFSWESHKGFYVAFPEDQNEAQELV 415

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +     +  V  N  ++  +      + +       T +           ++   
Sbjct: 416 EKLRPFFESTEIEKVGQNLKYDIKVLANYK-LKVKG-PLFDTMLAHYIINPDMRHNMNIL 473

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN+S    +   GK       K        D T+     A   F      + E   
Sbjct: 474 AETYLNYSPQPIEDLIGKKGKR--QKTMRTVSLEDQTQYAVEDADITFQLKTYFEKELKE 531

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              + L    D E  L  +   +   G  +D   +  + E + ++ ++L++ +    +G 
Sbjct: 532 ASNEPLFK--DMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEKSVYVEAEGE 589

Query: 232 IRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF    I             T + +LS+          +L     S 
Sbjct: 590 F-NIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIVREVLEWRQLSK 648

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++ L + +    +   T      + TGR S      QN+P               
Sbjct: 649 LKSTYVDALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIP--------------- 693

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            VR   +       L+ AD + IE R++A ++ E   + AF NG
Sbjct: 694 ---------IRTERGREVRKAFVPRDENYVLLAADYSQIELRIIAALSQEKTMMNAFKNG 744

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+ +T A+ F   I++V++ QR+  K +   + Y                D       
Sbjct: 745 EDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYG-----VSAFGLSNQTD------- 792

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                           L     + + + +   +  +     +  
Sbjct: 793 --------------------------------LTRNESKELIETYYKTYPKLRDYMDEQV 820

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E           +                           RR    D+      + +A  
Sbjct: 821 EFAKEHGYVKTVM--------------------------GRRRYLKDINAKNHIVRSAAE 854

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639
           +               +Q  + DI+   M N             ++L VHDE++ +    
Sbjct: 855 RN---------AVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQVHDELIFDAHKD 905

Query: 640 PYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              ++  L    M         +PL  E    + +
Sbjct: 906 EIDALTALVKDKMENAFK--LDVPLDVEMGTGQNW 938


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/692 (16%), Positives = 202/692 (29%), Gaps = 143/692 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             +  D ET S   L          +A +   ++++          +E            
Sbjct: 372 KVVCFDTETTSLNEL----------EAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIF 421

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +   E ++ VAHN  F+  + K+   I +    +  T +            +      
Sbjct: 422 RPFFEKEDLLKVAHNLKFDYKVLKQY-DITVKGAMF-DTMIAHYLLNPDGRHGMDYLSEV 479

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN+     +   GK    +      D+     T      A   F  Y     +  +E  
Sbjct: 480 YLNYKPVSIETIIGKKGKKQG--NFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENL 537

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L    + E  L  +   +   G  +D   + +    +  + K L+  I +L+     +
Sbjct: 538 EELF--YNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFELSGEEF-N 594

Query: 235 SRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 L   LF    +D     ++     T + +L   +        IL          
Sbjct: 595 MNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQKLKS 654

Query: 290 LKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   +  D  R+        A  TGR +      QN+P                 
Sbjct: 655 TYVDALPSQIDKDDNRVHTNFSQTTA-ATGRLASVNPNLQNIP----------------- 696

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     L    +R   ++  GKK++ AD + IE R++A I+GE+  IKAF +GEDI
Sbjct: 697 -------IRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQDGEDI 749

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + +T AK F  P+ +VSK QR+  K +   +                             
Sbjct: 750 HASTAAKLFKIPLAEVSKTQRSQAKTVNFGII---------------------------- 781

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   A +  L  T  + + +A+   +  + +   +     
Sbjct: 782 ----------------YGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVNKA 825

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
             +      +                           R+    D+  +   +     +  
Sbjct: 826 RQLGYVETIL--------------------------GRKRHLKDINSNNFVVRGHAERN- 858

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
                        VQ  + DI+   M    +          ++L VHDE+V E P     
Sbjct: 859 --------AVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPADEIE 910

Query: 643 SVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           S   L    M         +PL  E      +
Sbjct: 911 SASHLIRTEMENALK--TQVPLLVEIGVGDNW 940


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/711 (15%), Positives = 198/711 (27%), Gaps = 156/711 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTE-QSAMPSDL--- 57
           + +D ET    P            A +      W      +     +     +P  L   
Sbjct: 397 VALDTETTDLNPFR----------AQLVGIGMCWGPGSDDLAYIPVSHQGDPIPDQLPLE 446

Query: 58  ------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSL 109
                   +L          N+ ++R++  +  G+ +     + T +            L
Sbjct: 447 TVLQALAPWLASGEHPKALQNAKYDRLILLRH-GLPLAGV-VMDTLLADYLRDAAAKHGL 504

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                     S  L     GKA   +                      +   +YC  DV 
Sbjct: 505 DAMAQRDYGISPTLFSDLVGKAKEGKAS-------------NFSEVPLESAAQYCGMDVH 551

Query: 169 ATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            TR+L   L    +             E  L  +   +   G RID+  +  L   I   
Sbjct: 552 LTRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTN 611

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT 271
            ++L+    +  +    +      L   LF   G+D            T  ++L      
Sbjct: 612 LERLEASAKEAAEIDF-NLASPKQLGDLLFNTLGLDRKKSRRTKTGYSTDATVLEKLEHD 670

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                L+L     S      ++ L + V +  GR+         + TGR S      QN+
Sbjct: 671 HPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 729

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                             S  +R   +  +G  L+ AD + IE R+L 
Sbjct: 730 P------------------------VRTEYSRRIRKAFLPQDGWTLLSADYSQIELRILT 765

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++GE+   +A+ +G+D++  T         D+VS ++R +GK +   + Y  GA+ F  
Sbjct: 766 HLSGEEVLQQAYRDGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGAQRF-- 821

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                   + Q       +   + + +  +     +         + ++G          
Sbjct: 822 ---ARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSQGYVETILGRRRPFHFDR- 877

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                                                 L        + I L  +RR   
Sbjct: 878 ------------------------------------NGLGRLNGMDPLEINLEVARR--- 898

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624
                         +Q +R            +Q  S DI+   M               +
Sbjct: 899 ----------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQAKLESKNLPARL 942

Query: 625 VLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +L VHDE+V ET       V  L    M         +PL+ E      + 
Sbjct: 943 LLQVHDELVLETEPEALAVVEELVVQTMKNAID--LSVPLEVETGNGANWM 991


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/710 (14%), Positives = 202/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +   +           +            
Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L D +++ +  N  ++  +F + LGI++       T +L+  
Sbjct: 396 LAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ-LGINVAP--IDDTMLLSYA 452

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L+ +    K  +  GK+ I        D+  Y    A+  ++ 
Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R      ++++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQLFKPQLHRVGVT--KVYETL------ERPLVSVLAAMERSGVKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+++I +L      +      L   LF   G++     +     T   +L      
Sbjct: 565 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDLATE 623

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 624 HDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 682

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 683 P------------------------IRSEEGRRIREAFVAEPGKALVALDYSQIELRILA 718

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF +G DI+  T ++ F  P+D+++ + R   K +               
Sbjct: 719 HIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINF------------- 765

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 766 -GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 794

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     D                                    +     R++  
Sbjct: 795 FERFPGIRTYMNDTKAFAKEHG--------------------------FVQTLFGRKIHT 828

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626
                + +          R            +Q  + D++   M             ++L
Sbjct: 829 P----EINAKGPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPHAIKDLPATMLL 878

Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            VHDE++ E        +      +M     P     + L  +      +
Sbjct: 879 QVHDELLFEVEKGAEDDLIAAARQVMENAADPVVKLDVKLDVDAGVGASW 928


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/686 (15%), Positives = 192/686 (27%), Gaps = 137/686 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLL--- 58
           + +D ET    PL             +   + A D+               +P+D++   
Sbjct: 329 VAVDTETDGLDPLTC----------RLVGVSLAVDEGRACYVPLAAPDVRPLPADVVREV 378

Query: 59  --QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
               L  + V  V  N  F+  + ++  G+  P   +  T V A          +L    
Sbjct: 379 LTPLLASQKVSKVGQNLKFDYHVLRRW-GVR-PEGPFFDTMVAAWLLESDAGRYNLDRLA 436

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L +     K    K   +       ++  Y    A+         +      +  R 
Sbjct: 437 EKYLGWRTIHYKDVVEKGA-SFETVPVAEAGVYAAEDADIALRLSRVLKERLEAGDLGRV 495

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            +       + E  L  +   + + G  +D + +      + +    ++ +I  L     
Sbjct: 496 FY-------EMEMPLLSILARMEEWGIGLDGEALSAFGRELDERISNIENEIFDLVGHEF 548

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   T  L+  LF+  G+  V  ++    T  S+L            +L   + +    
Sbjct: 549 -NVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAAQDPVAAKVLEYRSLTKLKN 607

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V+   GRL       G + TGR S      QN+P                 
Sbjct: 608 TYVDVLPGLVNPETGRLHTWFSQVG-TATGRLSSKDPNLQNIP----------------- 649

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +   G   + AD + IE  +LA ++G+    +AF  GED+
Sbjct: 650 -------IKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREGEDV 702

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T +  F  P + V+ EQR I K +   + Y               L + +       
Sbjct: 703 HRATGSLLFGVPPETVTPEQRRIAKTINFGVIYGMS-----AFRLSRELGIPRKEAERFI 757

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            + F  +    +       +  E      L G    L     R K Q             
Sbjct: 758 NAYFTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKT--------GAE 809

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
              V      S   +                       +L   D+      +  A+    
Sbjct: 810 RIAVNTPIQGSGADII----------------------KLAMIDLDAQMRRMGLASR--- 844

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                                    M           L VHDE++ E P      +  L 
Sbjct: 845 -------------------------MI----------LQVHDELIFEVPPEELEVMKRLV 869

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
              M         +PL+ E    + +
Sbjct: 870 RERMEGVVR--LSVPLRVEIGVGRNW 893


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/727 (14%), Positives = 198/727 (27%), Gaps = 189/727 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQS--- 51
           +  D ET S            A QA +   + A  D                   ++   
Sbjct: 401 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYIPLAHKNGVG 450

Query: 52  ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                               L   L D  V+ VA N  ++ +L ++     I ++ +  T
Sbjct: 451 DLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDT 507

Query: 97  SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            +++           +       L  +    K   G                        
Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 552

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
           +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 553 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 612

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
             ++ +L   +AQ   +L+++I  +  G   +      L   LF   G+     ++    
Sbjct: 613 RQILSRLSGELAQGAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 671

Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T   +L             I++    +       + L   V ++ +   T     ++ T
Sbjct: 672 STSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAETKRVHTSYSLASTTT 731

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  I++ G KL+
Sbjct: 732 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 767

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 768 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 827

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +  +                               
Sbjct: 828 --------------GIIYGISAFGLANQLSIE---------------------------- 845

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
              +      K +  +  G+    +                                   
Sbjct: 846 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 884

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR+ Y +++     +        R            +Q  + D++   M   
Sbjct: 885 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIRM 928

Query: 618 TKNGY--------DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666
                         ++L VHDE++ E  D         + S+M     P+    +PL+ +
Sbjct: 929 EPALAEVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRVD 988

Query: 667 GYEAKRY 673
              A  +
Sbjct: 989 ARAASNW 995


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/706 (13%), Positives = 201/706 (28%), Gaps = 168/706 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSD 56
           + +   D ET S   L           A +   ++++           E    +      
Sbjct: 357 LKEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRV 406

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L   L +  +  +  N  ++ ++ K   G+ +   R+  T + +         +L +   
Sbjct: 407 LKPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVRF-DTMLASYVLNPDKTHNLDDLAA 464

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L           GK                   ++ +    +   +Y  +D +   +L
Sbjct: 465 DHLGLETVKYADLVGKG---------------KSEKSIYEVEPKTLSDYACQDADVALQL 509

Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              L               + E  L  +   +   G R+D+ ++  L E +  E  ++ +
Sbjct: 510 KNVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSK 569

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279
            I+    G   +      L   LF    +           T   +L     +      IL
Sbjct: 570 -IIYDAAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTGYSTDVRVLEELAESFPVAKQIL 628

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              +        ++ L   V    GR+  +   + A  TGR S      QN+P       
Sbjct: 629 EYRSLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIA-ATGRLSSSNPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   + S+    L+ AD + IE R+ A ++G+  
Sbjct: 681 -----------------IRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPT 723

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AF N EDI+ TT    F    D+V+K+ R   K +                    G+
Sbjct: 724 MLGAFQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNF--------------GVLYGI 767

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                +Q +                               +     + +   ++ K+  +
Sbjct: 768 MPFGLAQRLD------------------------------ISQAEAKEIISQYKEKYPMI 797

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               + + +           +                           RR    D+    
Sbjct: 798 FSYLEGILDKARASGYVETLL--------------------------GRRRYIRDLNSKN 831

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATK--NGYDIVLTVHDE 631
             + +A     R            +Q  + D++ + M     +  K      ++L VHDE
Sbjct: 832 FSIRSAA---ERAAI------NTPIQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDE 882

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKG---LPLKAEGYEAKRY 673
           ++    ++    +  L    M +    A G   +P++ E      +
Sbjct: 883 LLFNMHESEVDILPELVQREMIEAAK-AIGIRNVPIEVEVGTGANW 927


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/710 (15%), Positives = 197/710 (27%), Gaps = 174/710 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62
            +D ET    PL           A I   + A             +  + +   + L   
Sbjct: 385 AVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVD 434

Query: 63  -----------DETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLPS--- 107
                      D+ V+ + HN+ F+ ++     GI +        T +++ +        
Sbjct: 435 AALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISYSQSAGLHGQ 493

Query: 108 SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +       LN +        G                            +   +Y   D
Sbjct: 494 GMDELSNLHLNHTPITYDSVTGTGRNR---------------VPFAQVPVETATKYAAED 538

Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  L+  L P              ER L ++   +   G  +D   + +L +     
Sbjct: 539 ADVTLRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEAR 598

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271
            + ++ DI +   G   +      L   LF   G+      +     T  S+L       
Sbjct: 599 MQGMENDIYEAA-GRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQG 657

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 IL     +       + L      D R+  +      + TGR S      QN+P
Sbjct: 658 HDLPARILAWRQLAKLKSTYTDALLRQAGRDDRVHTSF-QMAITSTGRLSSTDPNLQNIP 716

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA +GKKL+ AD + IE R+LA 
Sbjct: 717 ------------------------VRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLAD 752

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A      +AF  G+DI+  T ++ FN P++ +    R   K +                
Sbjct: 753 VANIPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------F 798

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                     +  +          A+ 
Sbjct: 799 GIIYGIS------------------------------AFGLGKQLGIPAGEARTYIDAYF 828

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ G+    + + E                                 ++ P  RR    
Sbjct: 829 ARYPGIRDYMERMREEARTHGY--------------------------VLTPFGRRCYVP 862

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGY---DI 624
            +    +          R+            Q  + DI+   M        K G+    +
Sbjct: 863 GIHEKSAARRQYA---ERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGATRM 913

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ ET ++   +V  +   +M      A  +PL  E    + +
Sbjct: 914 LLQVHDELLFETDESDAEAVAEIIKNVMEAAADLA--VPLVVETGIGQNW 961


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 195/710 (27%), Gaps = 166/710 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           L  D ET S  P+          QA +   + A             +             
Sbjct: 389 LAFDTETTSLDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGMVE 438

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                    + L   L D +V+ +A N  ++ ++ ++     I +  +  T +++     
Sbjct: 439 GQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLDA 495

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                     +  +        
Sbjct: 496 GTGSHGMDPLSERWLGHTPIPYKDVAGSG---------------KSAVSFDMVDLDRATA 540

Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L  
Sbjct: 541 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSG 600

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +AQ     +++I +L  G   +      L   LF    +     ++     T   +L  
Sbjct: 601 DLAQAAAAYEDEIYELA-GERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSAQVLED 659

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      I++    +       + L   ++ + +   T     ++ TGR S     
Sbjct: 660 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLSSSDPN 719

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G KLV AD + IE 
Sbjct: 720 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLVSADYSQIEL 755

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y     
Sbjct: 756 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG---- 811

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L + +        + FE +   + +    +    E    + + G      
Sbjct: 812 -ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYP 870

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               RA +  V                +G +    R A +                    
Sbjct: 871 DI--RASNPQVRAFN---ERAAINAPIQGSAADIIRRAMIRMEDALAE------------ 913

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                                               Q ++       +            
Sbjct: 914 ------------------------------------QNLAA----RMLLQVHDE------ 927

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
                ++ E PD        +   +M     P+ +  +PL  +   A  +
Sbjct: 928 -----LIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDARAAHNW 972


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/712 (14%), Positives = 196/712 (27%), Gaps = 184/712 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
               D ET S  P+          QA +   + A                          
Sbjct: 380 YFAFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRI 429

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
                     + L   L ++ ++ +  N  ++ ++ K+    DI  + +  T +L+    
Sbjct: 430 VPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---DIVMRSFDDTMLLSYALE 486

Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  +       L       K     GK +++                       + 
Sbjct: 487 AGISTHGIDVLSERWLGHKPITYKDLTYNGKKIVSF-----------------AQIDLKQ 529

Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L++ L P              +R L  +   + +RG  +D  ++ +
Sbjct: 530 ATLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSR 589

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264
           L   +AQ    L+E+I +L  G   +      L   LF   G+     ++     T    
Sbjct: 590 LSGELAQAALNLEEEIYQLV-GERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQT 648

Query: 265 LSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322
           L        +    I++    +       + L   + +  GR+         + TGR S 
Sbjct: 649 LEELATEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLAT-TSTGRLSS 707

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R+  IAS G  L+ AD +
Sbjct: 708 SEPNLQNIP------------------------ARTAEGRKIRAAFIASEGHILLSADYS 743

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA  A      +AF  G+DI+  T ++ F   ++ +  + R   K +   + Y 
Sbjct: 744 QIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYG 803

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                  +      L                                        +    
Sbjct: 804 -----ISSFGLANQL---------------------------------------GISRKE 819

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                + +  +  G+    +                                        
Sbjct: 820 AGNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIF------------------------ 855

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
              RR+ Y ++K     +        R            +Q  + DI+   M        
Sbjct: 856 --GRRIHYPEIKTANPQIRAF---NERAAINAP------IQGSAADIIRRAMIQVENALE 904

Query: 618 -TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKA 665
             K    ++L VHDE++ E   +    +   +  +M     P+ +  +PL+ 
Sbjct: 905 KEKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEV 956


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/702 (13%), Positives = 193/702 (27%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
           S L +D ET S  P+           A +   ++A +++            E   + +  
Sbjct: 348 SILSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +  ++ V  N  ++  +     G+ +  K +  T +        L  ++      
Sbjct: 398 KPIYENPDILKVGQNLKYDLEVLHNY-GVTLKGKMF-DTMLAHYVIQPELRHNMDYMAET 455

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN+         G              P     ++      +   EY   D + T +L 
Sbjct: 456 LLNYRTIHIDELIG--------------PRGKNQKSMRELDPKEVYEYAAEDADITLQLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L                E  L  +   I   G  ID D + +   ++ +  +  + +I
Sbjct: 502 NVLETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +L      +      +   LF    I +    ++     T + +L            IL
Sbjct: 562 YQLAGEEF-NISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 EYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQA-ITATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                              G     +R C I   G     AD + IE RV+A ++ +   
Sbjct: 673 -----------------VRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G DI+  T AK +  PI++V++++R   K     + Y              G+ 
Sbjct: 716 IEAFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIY--------------GIT 761

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               +Q +   +                                 + + + +      V 
Sbjct: 762 TYGLAQRLDIDN------------------------------REAKELIEGYFETFPQVY 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +  +                                           RR    D+    +
Sbjct: 792 EYMERAKADARAKGYAETLFH--------------------------RRRYLPDINSHNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632
            +     +               +Q  + DI+   M               ++L VHDE+
Sbjct: 826 TVRGYAERN---------AINAPIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M         +PL A+      +
Sbjct: 877 NFSVYPDEKEKVERIVLEEMQNAYP--LRVPLVADAGWGSNW 916


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 182/701 (25%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S   +          +A +   ++A  +                       +
Sbjct: 354 VAFDTETDSLDYM----------EANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRDWV 403

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +++  +L D   + V  N  ++  +  +   I +    +  T + +           + 
Sbjct: 404 LAEMKLWLEDAGALKVGQNLKYDASVLARY-DIAMRGIAY-DTMLESYVFNSVAGKHDMD 461

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +         Y   D + 
Sbjct: 462 SLALRYLQHQCISFEEIAGKGKKQL---------------TFNQIELDQAAPYAAEDADV 506

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   L+                E  L  +   +   G  I  +++ K  + IA    
Sbjct: 507 TLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISAEMLAKQSQEIAVRLD 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
            L++++ +L      +      L+  LF   G+         +  T + +L    +    
Sbjct: 567 TLEKEVFELAGEEF-NLSSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              IL     +       + L + V    GR+  +      + TGR S      QN+P  
Sbjct: 626 PKRILEYRGLAKLKSTYTDKLPKMVKPATGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  GK ++  D + IE R++A ++
Sbjct: 683 ----------------------IRNEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++  I AF +G+DI+  T A+     I  V+ E R   K +   L Y            
Sbjct: 721 GDEALIDAFRHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E    + + G    L        
Sbjct: 776 AKQLGIPRGEAQQYMDRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +G                     +++           P  R       
Sbjct: 828 -PEIKSSNAMRRKGAERAAINAPMQGTAADIIKRAMILV---DAWIQQQPEGR------- 876

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +VL       
Sbjct: 877 ------------------------VALIMQ-------------VHDE---LVL------- 889

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E        V   +C LM         +PL A+      +
Sbjct: 890 -EVDTEHLAEVEQQVCKLMESAA--LLDVPLVADSGSGANW 927


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/707 (15%), Positives = 192/707 (27%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYL- 61
             ID+ET S  PL           A I   A +             +    P  L + L 
Sbjct: 316 FAIDLETTSLNPL----------DASIVGYAVSCLAHEAYYIPIGHRYLGAPEQLPEALV 365

Query: 62  --------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
                    D     +  N  ++  + ++  G+++    W  T + A       +   L 
Sbjct: 366 LELLGPLLTDPDRKKIGQNLKYDYQVLQQ-SGVELAGI-WCDTMLAAYLVNPSRNSQGLD 423

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L+          G                  C            G Y   D +A
Sbjct: 424 ALALEYLDHRMISYAEVAGTG---------------KCELNFSEVDLDRAGPYSCEDADA 468

Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L+P            D E  L  +   +   G ++D++L+ +L     ++  +
Sbjct: 469 TYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIE 528

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274
           L+  I +   G   +      L   LF   G+ +   ++      T    L         
Sbjct: 529 LEAKIHEHCGGSF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEV 587

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L+L   + S       + L   V    GR+  +      + TGR S      QN+P  
Sbjct: 588 ARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYNQA-ITNTGRLSSSDPNLQNIP-- 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                   G     +R   IA  G  ++ AD + IE RVLA ++
Sbjct: 645 ----------------------VRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+    +AFA GEDI+  T A+ F    + V+ E R                        
Sbjct: 683 GDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQA--------------------- 721

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                  +  +  +         A +  +     +   + +  +
Sbjct: 722 -----------------------KVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFER 758

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           H G                                           +     RRL   ++
Sbjct: 759 HSGARSFLDRCIAEAETCG--------------------------FVTTILGRRLQIPEI 792

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                       +           T   +Q  + DI+   M          K    +++ 
Sbjct: 793 ASKNGNARAFAQRN---------ATNYPIQGSAADIIKAAMIRVTRRMLEEKVASRLIMQ 843

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P      +  L    M         +PLK +      +
Sbjct: 844 VHDELVFEVPRNERELMEDLVRAEMEGALP--LSVPLKVDLNFGLNW 888


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/702 (13%), Positives = 186/702 (26%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSDL---L 58
            + ID ET S   +           A +   +++ ++           +      +    
Sbjct: 349 FVSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYIRIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               ++ ++ +  N  ++  +     G+ +  + +  T +        L  ++       
Sbjct: 399 PLYENDKILKIGQNIKYDYKVLNNY-GVTLQGEMF-DTMIAHYLIQPELHHNMDYMAETL 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K    +  +    +                  EY   D + T  L 
Sbjct: 457 LGYRTIHIEELIGPKGKKQKNMRDLSPTDIC---------------EYAAEDADITLRLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G  +D + + +   +     K+ +++I
Sbjct: 502 HLLEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            K   G   +      +   LF    I D    ++     T + +L            IL
Sbjct: 562 YKEA-GETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N           ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQ-TATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I  +G     AD + IE R++A ++G++  
Sbjct: 673 -----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF  G DI+  T AK ++  IDKV+  QR   K                      G+ 
Sbjct: 716 MEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQAN--------------FGIIYGI- 760

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A +  +       + + +      V 
Sbjct: 761 -----------------------------TTYGLAQRMGIPNGEARELIQDYFHTFPKVK 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +   E                                       RR    D+    +
Sbjct: 792 AYMEQAKETARAKGYAETLFH--------------------------RRRYLPDINSRNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
              T      R            +Q    DI+   M    K          ++L VHDE+
Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M         +PL A+      +
Sbjct: 877 NFSVYPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/694 (15%), Positives = 202/694 (29%), Gaps = 151/694 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           +  D ET S   +          +A +   ++++               E  A+      
Sbjct: 365 VCFDTETTSLDEM----------EAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRP 414

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +   E+++ +AHN  ++  +     GI++       T +            +       L
Sbjct: 415 FFEKESILKIAHNLKYDYKVLLNY-GIEVTG-NLFDTMIAHYLLNPDGRHGMDYLSEMYL 472

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+     +   GK    +              +           +Y   D + T +L++ 
Sbjct: 473 NYKPIALETLIGKKGKGQ--------------KTLREIDLPTQTQYAAEDADITFQLYEI 518

Query: 177 LIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P    E            L  +   +   G  +D + +      + Q+ K L+  I +
Sbjct: 519 FSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGVALDEEWLKDESISLEQDLKILEGQIFE 578

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNR 281
                  +      L   LF    +D            T + +L   +       LIL  
Sbjct: 579 QAGEEF-NINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKHEIIKLILEY 637

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     ++ L   +S  DGR+  +     A  TGR +      QN+P         
Sbjct: 638 RQLQKLKSTYVDALPNQISPIDGRVHTSFAQTVA-ATGRLASNNPNLQNIP--------- 687

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR   +A  G K+V AD + IE R++A I+GE+  IK
Sbjct: 688 ---------------IRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIK 732

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF  G+DI+ +T +K F+ P+++VSK QR+  K +   + Y          A      L 
Sbjct: 733 AFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQS-----AFALADQTGLS 787

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +        S +E + + ++          +    + ++G    L         + +   
Sbjct: 788 RTDAKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHL---------KDINSN 838

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +               +                          +L    +  +    
Sbjct: 839 NFVVRGHAERNAVNAPIQGSAADII---------------------KLAMIKIDSEIKA- 876

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                 Q +                  ++L VHDE+V E P+  
Sbjct: 877 ----------------------QGL---------------KTKMLLQVHDELVFEVPNEE 899

Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                T +   M     ++  +PL  E      +
Sbjct: 900 IEVATTLIKQEMETA--YSTKVPLLTEVGVGDNW 931


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/697 (15%), Positives = 192/697 (27%), Gaps = 152/697 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----S 55
           +  ID ET    P            A +   + A                  +P      
Sbjct: 341 RFAIDTETTGLNP----------RHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALE 390

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L D +++ + HN+ F+  + ++  G+   +     T +++ T G       +   
Sbjct: 391 RLAPVLADPSILKIFHNAKFDLHVLERA-GLA-DATPVDDTMLMSYTLGAGRHGHGMDEL 448

Query: 113 CL-ALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L+          G               +  Y    A+      L     +   EA
Sbjct: 449 SALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLR-PRLRTEA 507

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L++ +      ER L  +   +   G  +D   +  +    A+    +  +I +   
Sbjct: 508 ALALYETM------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREI-EKLA 560

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI-TQLAKDLILNRLAS 284
           G   +      L   LF   G+     ++     T  ++L             +L     
Sbjct: 561 GRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQL 620

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   + L   +   D R+  +      + TGR S      QN+P            
Sbjct: 621 QKLKSTYADALVGEIDIADQRVHTSFSQA-ITTTGRLSSNEPNLQNIP------------ 667

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA+ GK L+ AD + IE R+LA +A      ++FA
Sbjct: 668 ------------IRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFA 715

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            GEDI+  T A+ F  P++ +    R   K +                    G+      
Sbjct: 716 KGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYGIS----- 756

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A +  +  +  +    A+ A++  + +   +
Sbjct: 757 -------------------------AFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNE 791

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
             E                                 ++ P  RR     +          
Sbjct: 792 TAEFARTHGY--------------------------VLTPFGRRCYVPGITEKNPARRGY 825

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
                R+            Q  + DI+   M               ++L VHDE+V E P
Sbjct: 826 A---ERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAP 876

Query: 638 DTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   L C++M    S    +PL  E      +
Sbjct: 877 KDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 911


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
              D ET S   +           A +   ++A +                   +P +  
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE ++ V  N  ++R +      I++    +  T + +           + 
Sbjct: 404 LALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   
Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ G+DI+  T A+ F  P+D VS EQR   K +   L Y            
Sbjct: 721 RDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRKEQPRVR------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V   +  LM  + + A  +PL  E    + +
Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/710 (14%), Positives = 195/710 (27%), Gaps = 174/710 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62
            +D ET    PL           A I   + A             +  + +   + L   
Sbjct: 353 AVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVD 402

Query: 63  -----------DETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLPS--- 107
                      D+ V+ + HN+ F+ ++     GI +        T +++ +        
Sbjct: 403 AALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISYSQSAGLHGQ 461

Query: 108 SLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +     + L+ +        G                                +Y   D
Sbjct: 462 GMDELSAMHLSHTPISYDSVTGTGRNRL---------------PFAQVPVATATKYAAED 506

Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  L+  L P              ER L  +   +   G  +D   + +L +     
Sbjct: 507 ADVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEAR 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271
            + ++ DI +   G   +      L   LF   G+      +     T  S+L       
Sbjct: 567 MQGMENDIYEAA-GRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQG 625

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                 IL     +       + L      + R+  +      + TGR S      QN+P
Sbjct: 626 HDLPARILAWRQLAKLKSTYTDALLRQAGRNDRVHTSF-QMAITSTGRLSSTDPNLQNIP 684

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  GKKL+ AD + IE R+LA 
Sbjct: 685 ------------------------VRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLAD 720

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A      +AF  G+DI+  T ++ FN P++ +    R   K +                
Sbjct: 721 VANIPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------F 766

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                     +  +          A+ 
Sbjct: 767 GIIYGIS------------------------------AFGLGKQLGIPAGEARTYIDAYF 796

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A++ G+    + + E                                 ++ P  RR    
Sbjct: 797 ARYPGIRDYMERMREEARTHGY--------------------------VLTPFGRRCYVP 830

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGY---DI 624
            +    +          R+            Q  + DI+   M        K G+    +
Sbjct: 831 GIHEKSAARRQYA---ERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGETRM 881

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ ET ++   +V  +   +M      A  +PL  E    + +
Sbjct: 882 LLQVHDELLFETDESEAEAVAAIIKNVMEAAADLA--VPLVVETGIGQNW 929


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
              D ET S   +           A +   ++A +                   +P +  
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE ++ V  N  ++R +      I++    +  T + +           + 
Sbjct: 404 LALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   
Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y            
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRKEQPRVR------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V   +  LM  + + A  +PL  E    + +
Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56
              D ET S   +           A +   ++A +                   +P +  
Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V+ V  N  ++R +      I++    +  T + +           + 
Sbjct: 404 LALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++    + IAQ   
Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D VS EQR   K +   L Y            
Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V   +  LM  + + A  +PL  E    + +
Sbjct: 892 ----KDELNAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/701 (13%), Positives = 193/701 (27%), Gaps = 164/701 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           +  D ET              A  A +   +++                    +  +   
Sbjct: 368 ISFDTETTGTD----------ANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRP 417

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            L +E ++ +  N  ++ ++ K   GI +   R   T +           ++       L
Sbjct: 418 VLENENIVKIGQNIKYDMLILKWY-GISVKG-RLFDTMLAHYLIDPDTRHNMDVLSENYL 475

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+S        G    ++                      +   +Y   D + T +L   
Sbjct: 476 NYSPISITTLIGPKGKSQG--------------TMRDVPVEKVVDYAAEDADITLQLANV 521

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             PL           + E  L  +   I   G RID+D ++   + +  + +K ++ +  
Sbjct: 522 FEPLLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYD 581

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNR 281
                  +      L   LF    +D     ++     T + +L            IL+ 
Sbjct: 582 KCGIKF-NLASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDILDF 640

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     ++ L   V+   GR+  +     A  TGR S      QN+P         
Sbjct: 641 RQLQKLKSTYVDALPLLVNPKTGRVHTSFNQAVA-ATGRLSSNNPNLQNIP--------- 690

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR   I       L+ AD + IE R++A I+ E+  +
Sbjct: 691 ---------------IRTERGREVRKAFIPRDENHILLSADYSQIELRIIADISKEENML 735

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF NG DI+  T A+ +   I++V+  QR                              
Sbjct: 736 DAFKNGIDIHTATAARVYGIAIEEVTPTQRRNA--------------------------- 768

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            +A +  +         +    +       + + +  ++ G+ +
Sbjct: 769 -----------------KAVNFGIIYGQSAFGLSQNLGIPRKEAAEIIEQYFTQYPGIKR 811

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              D                                    +     RR    D+      
Sbjct: 812 YMSDTMNFARENG--------------------------FVETILGRRRYLRDINSANQ- 844

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633
             T      R            +Q  + D++   M N  K          + + VHDE+V
Sbjct: 845 --TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELV 896

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +   +   ++  +    M         +P++ E  E + +
Sbjct: 897 FDVLKSEVEAMKKIIAHRMKTAIK--TTVPIEVEIGEGENW 935


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/720 (14%), Positives = 189/720 (26%), Gaps = 184/720 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
            + ID ET + + +           A +   +++                          
Sbjct: 352 IIAIDTETDNLEGMK----------ANLCGISFSIVPGKAYYVPVGHGQTDLSLDDPEHS 401

Query: 53  -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                      L   L D +++ V  N  ++ ++ ++    DI    +  T +L+     
Sbjct: 402 QQMSEATALDILKPVLLDPSILKVGQNLKYDLLILRER---DIDVVGYDDTMLLSYAADC 458

Query: 106 P----SSLKNACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  +       L       K     GK           D+                
Sbjct: 459 GFASLHGMDELSKRHLGHEPIPYKEIVGTGKKQKTFGDVPIKDAYI-------------- 504

Query: 159 FGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L   L                +R L  +   +   G ++D D +  
Sbjct: 505 ---YAAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSA 561

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264
           L    AQ     +  +  +  G   +      +   LF   G+     ++     T    
Sbjct: 562 LSGEFAQRMAAHEAAVHDIA-GERFNLASPKQIGDILFGKLGLPGGKKTKTGAWSTAADT 620

Query: 265 LSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           L             IL+    +       + LSE++    GR+  +     ++ TGR S 
Sbjct: 621 LETLAADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSLA-STTTGRLSS 679

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   I  +G  L+ AD +
Sbjct: 680 NDPNLQNIP------------------------IRTEDGRKIREAFIPEDGNVLISADYS 715

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA IA     I+AF  G DI+  T A+ F  P++ +    R   K +       
Sbjct: 716 QIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAIN------ 769

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+                                   A    +    
Sbjct: 770 --------FGIIYGIS------------------------------AFGLARNLGIGRDE 791

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             L  K +  +  G+     +  EG                                +  
Sbjct: 792 ASLFIKRYFERFPGIKAYMDETIEGARVHGY--------------------------VET 825

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
              RR    ++K     +        R+           +Q  + DI+   M        
Sbjct: 826 LFGRRSHTPNIKAKQPNIR---MGAERQAINAP------IQGSAADIVKRAMIRVPAALA 876

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             +    ++L VHDE+V E P          L  +M     P+ +  +PL  E  +   +
Sbjct: 877 AHRLSAKMLLQVHDELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEAGQGASW 936


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/693 (16%), Positives = 200/693 (28%), Gaps = 134/693 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQS-------AMPSDL 57
           D ET    P           +  +      W  D   +        +        +   L
Sbjct: 385 DTETTGLDP----------REVDLVGIGCCWGRDPGNIAYIPIAHHNGNQLEKTQIFQAL 434

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L  E    V  N+ F+R +F    GI +       T + +         +L +  L 
Sbjct: 435 KPILETEKYPKVFQNAKFDRAIFA-HQGISLAGV-VFDTMLASYVLHPEMKHNLTDLSLR 492

Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              N      K            +   D           +  +  +     + ++   + 
Sbjct: 493 YLGNIIAKSYKDLGLTKK-----QTIADLEISVAAEYCGLDVYTTYLV--CQKLKVELKD 545

Query: 174 FKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +  L  L +  E  L  +   + + G RID D + +L E +  +   L+       D   
Sbjct: 546 YPDLEKLLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYNAADERF 605

Query: 233 RSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L   LF   G+             T  ++L          D IL     +  
Sbjct: 606 -NLNSPKQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLAKL 664

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   VS    R+         + TGR S      QN+P               
Sbjct: 665 KSTYIDALPTLVSPKTDRIHTDFNQT-LTSTGRLSSSNPNLQNIP--------------- 708

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                         S  +R   I      LV AD + IE R+L  ++ E   ++A+  GE
Sbjct: 709 ---------VRTEFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILLQAYQAGE 759

Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           D++  T    F+      V+  +R IGK++   + Y  GA   +  A   G+  ++    
Sbjct: 760 DVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGA---QRFAREAGVSKEEGRA- 815

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                  E + +   +   ++ Q         ++         +                
Sbjct: 816 -FIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQRRRNFDFIS---------------- 858

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                  L+  +      I L S   L Y+             +
Sbjct: 859 ---------------------NCLIELKGSDPKAIDLDS---LDYA----------YNDA 884

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
           QL+R            +Q  S DI+   M    +        ++L VHDE+V E P   +
Sbjct: 885 QLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELVFEMPPEEW 938

Query: 642 FSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +   + + M +       +PL  + +  K +
Sbjct: 939 EELGSKIKTTMEQAVP--LSIPLVVDIHCGKNW 969


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 204/700 (29%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWV 404

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +   I++    +  T + +           + 
Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-DINLRGIAF-DTMLESYVLNSVAGRHDMD 462

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID +++    + +     
Sbjct: 508 TLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQNILAAHSKELTIRLD 567

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   +S   GR+  +      + TGR S      QN+P  
Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMISPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++KV+ EQR   K +   L Y            
Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMS-----AFGL 776

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  +      L G    L +   R  
Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNA 836

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + + +  + +           
Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPKVRV----------- 880

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH E V
Sbjct: 881 ---------------------------IMQ-------------VHDE---LVFEVH-ESV 896

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 897 LESTE------QKVRELMEQSMQLA--VPLKVDIGVGDNW 928


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/703 (13%), Positives = 186/703 (26%), Gaps = 161/703 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
             + ID ET S   +           A +   ++A ++                      
Sbjct: 354 KCIAIDTETDSLDYMV----------AHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQ 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              S L   L +  +  V  N  ++  +F +  GI++    +  T +L+         ++
Sbjct: 404 TALSLLKPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L       +   GK                      +    +   EY   D +
Sbjct: 462 DELAKRYLGHQTIHFEDIAGKGKAQL---------------TFNQIPLEQAAEYAAEDAD 506

Query: 169 ATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   I   G  ID D +    + I    
Sbjct: 507 ITMKLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             L++   +L  G   +   T  L+  LF    +         +  T + +L        
Sbjct: 567 TALEQQAYELA-GQQFNLASTKQLQEILFDKLSLPVLKKTPKGAPSTNEEVLEELAYEHA 625

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +++     S       + L   V+ D GR+  +      + TGR S      QN+P 
Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G +++ AD + IE R++A +
Sbjct: 684 -----------------------IRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHL 720

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AF  G+DI+ +T A+ F  P+ +VS EQR   K +   L Y        +  
Sbjct: 721 SQDKGLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMS-----SFG 775

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          F+ +   ++    +++          L      L       
Sbjct: 776 LSRQLGIPRHEAQKYMDLYFQRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYL------- 828

Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               +        +      +      +A  +     + + R                  
Sbjct: 829 --PDIQSSNAIRRKAAERVAINAPMQGTAADIIKRAMITLDREIA--------------- 871

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                                 +   M                 
Sbjct: 872 ---------GQPD-------------------------IKMIM-QVHDE----------- 885

Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E          T+    M +       +PL  +    K +
Sbjct: 886 LVFEVRTDKIEHFRTIIKTTMEQAAQLV--VPLIVDVGVGKNW 926


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 187/706 (26%), Gaps = 163/706 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + ID ET S  P+           A +   + + +           +            
Sbjct: 353 IVAIDTETTSLDPML----------AQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQ 402

Query: 51  ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-- 105
                +   +  +L D     +  +  ++  +F    G+ +       T + +       
Sbjct: 403 LSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANH-GVALRGIA-HDTMLESYVLASYR 460

Query: 106 PSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              + +    L +      +   GK                               EY  
Sbjct: 461 NHGMDSLAERLLSLKTITYEEVCGKGANQIG---------------FDQIDLPRATEYAA 505

Query: 165 RDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            D + T  L +++ P  +            E  + ++ Q I   G  ID D +      +
Sbjct: 506 EDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAEL 565

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSN 269
                 L+            +      +   LF    + +V  +      T + +L    
Sbjct: 566 GLRMMDLERAAHDAAGQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLA 624

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328
                  L+L+    S       + L + V+ + GR+  +     A  TGR +      Q
Sbjct: 625 DDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATA-VTGRLASTDPNLQ 683

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   IA+ G  +V AD + IE R+
Sbjct: 684 NIP------------------------VRTEEGRRIREAFIAAPGNVIVSADYSQIELRI 719

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A I+G++  ++AFANGEDI+  T  + F    + VS EQR   KV+   L Y       
Sbjct: 720 MAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMS---- 775

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                   L +++ +        F  +     +    +    E    + + G    L   
Sbjct: 776 -AFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWL--- 831

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                   +        +                                        +L
Sbjct: 832 ------PDINGGNGPRRQAAERAAINAPMQGTAADLI---------------------KL 864

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
               V+         T Q              I+Q                    +VL  
Sbjct: 865 SMIAVQDWLEGERLGTRQ--------------IMQ-------------VHDE---LVL-- 892

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 E P      V   L  LM    +    +PL AE      +
Sbjct: 893 ------EVPQAELELVRVKLPELMCAVAT--LNVPLVAEVGSGANW 930


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/698 (16%), Positives = 195/698 (27%), Gaps = 153/698 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +L ID ET S  P+           A +   +                            
Sbjct: 315 QLAIDTETTSLDPIR----------ADLVGFSLCVSPGLAYYAPLAHDWPADEPQAPRRQ 364

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109
               L Q L D  ++ +  N  ++  + ++  G+ +       T V             L
Sbjct: 365 ALDLLGQALADPGLLKIGQNLKYDLNVLRRA-GLSVAG-PLFDTMVADYLLNPAKASHGL 422

Query: 110 KN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           +  A   L       +   G             + PY    A+            K D  
Sbjct: 423 EAIAAEHLGRGVIGFEEAVGGKGKGFAQAPPERAVPYAAEDADVALQAAQA-LGPKLDEA 481

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             R LF  L      E  L  L   +   G  ID + + +L   + Q     ++ I  L 
Sbjct: 482 DLRRLFDEL------EMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAGEQKIYALA 535

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLA 283
                +   T  L   LF   G+  V  ++      T  S+L+           +L   A
Sbjct: 536 GHEF-NINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLPAEVLAYRA 594

Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++      ++ L   ++ D GR+  +      + TGR S      QN+P           
Sbjct: 595 NAKLKSTYVDALPALINPDTGRVHTSFNQCV-TATGRLSSSDPNLQNIP----------- 642

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                          G     +R C + + G+ LV AD + IE RVLA ++ +   ++  
Sbjct: 643 -------------VRGELGRRMRGCFVPAPGRLLVSADYSQIELRVLAHLSQDPLMLQDM 689

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           A G D++  T A+ F+     V++E R   K +   + Y                     
Sbjct: 690 AEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMS------------------ 731

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +     E +   +  ++QGV +  +
Sbjct: 732 --------------------------AFRLAREQGVSRAEAEDIIARYLGRYQGVARFQQ 765

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                          +                           RR     +    S    
Sbjct: 766 QNLSQCRQRGYVTTIL--------------------------GRRRFLPAI---NSSDRQ 796

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
           A     R            +Q  + DI+   M    +          ++L VHDE+V ET
Sbjct: 797 AREAAERVA------LNTPIQGSAADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFET 850

Query: 637 PDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           P+         +   M         + LK +    + +
Sbjct: 851 PEGGVEQFAQAVRRCMEDVLK--LDVELKVDVGWGRDW 886


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/702 (13%), Positives = 185/702 (26%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58
            + ID ET S   +           A +   +++ ++           +           
Sbjct: 349 FVSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               ++ ++ +  N  ++  +     G+ +  K +  T +        L  ++       
Sbjct: 399 PLYENDNILKIGQNIKYDYEVLNNY-GVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETL 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K    +  +    +                  EY   D + T  L 
Sbjct: 457 LGYRTIHIEELIGPKGKKQKNMRDLSPTDIC---------------EYAAEDADITLRLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G  +D + + +   +     K+ +++I
Sbjct: 502 HLLEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            K   G   +      +   LF    I D    ++     T + +L            IL
Sbjct: 562 YKEA-GETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N           ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQ-TATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I  +G     AD + IE R++A ++G++  
Sbjct: 673 -----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF  G DI+  T AK ++  IDKV+  QR   K                      G+ 
Sbjct: 716 MEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQAN--------------FGIIYGI- 760

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A +  +       + + +      V 
Sbjct: 761 -----------------------------TTYGLAQRMGIPNGEARELIQDYFHTFPKVK 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +   E                                       RR    D+    +
Sbjct: 792 AYMEQAKETARAKGYAETLFH--------------------------RRRYLPDINSRNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
              T      R            +Q    DI+   M    K          ++L VHDE+
Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M         +PL A+      +
Sbjct: 877 NFSVYPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/709 (14%), Positives = 192/709 (27%), Gaps = 174/709 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S + +           A +   ++A                          +
Sbjct: 349 FAFDTETTSLRYMA----------AEVVGVSFAVQPFEAAYVPFCHDYMGAPEQLDRDTV 398

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGL---PSSL 109
            + L   L       V  N  +++ +       DI  +     T V +          ++
Sbjct: 399 LAQLKPLLESPDHKKVGQNLKYDKNVLANH---DICLEGIAEDTMVQSYVLNSVSSRHNM 455

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L       +   GK                      +       G Y   D +
Sbjct: 456 DALALHYLGEETTTFESLAGKGAKQL---------------TFNQLELDKAGPYAAEDAD 500

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D +  L  +   +  RG  I    + +  + +A+  
Sbjct: 501 ITLRLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERM 560

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
            +L+    +   G   +      L++  +   G+         +  T + +L        
Sbjct: 561 AELETAAYEAA-GETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPSTAEPVLQELAHRHE 619

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              L+L   + S       +TL E +    GR+  +      + TGR S      QN+P 
Sbjct: 620 LPRLLLEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAV-TATGRLSSSEPNLQNIP- 677

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G KL+ AD + IE R++A +
Sbjct: 678 -----------------------IRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHL 714

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   + AFA GEDI+  T A+ F   +++V+ +QR   K +                 
Sbjct: 715 SEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINF--------------G 760

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 761 LIYGMS------------------------------AFGLARQLDVERKVAQQYIDRYFE 790

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GVL    ++ +                                 +     RRL   +
Sbjct: 791 RYPGVLTYMDNIRKQAHEDGY--------------------------VETLFGRRLYLPE 824

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625
           +    +          R            +Q  + DI+   M    +       +   + 
Sbjct: 825 I---NTRNKQLQQAAERTAINAP------MQGTAADIIKLAMIEVERWLLAEYPDSARMT 875

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE++ E  +     V   L   M+     A  +PL  E      +
Sbjct: 876 MQVHDELIIEVKEEAVEVVREGLIKRMSGAAELA--VPLLVEAGVGDNW 922


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 193/701 (27%), Gaps = 138/701 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50
            + +D ET S  P+           A +        +E   +       Q          
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQLS 431

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + S +  ++ D        NS F+R +F    G+D+    +  T +           
Sbjct: 432 IEEVFSKIRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L      L  F     K   GK       K        + +       +  F       
Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIDEASVYCGYDVFLTFKIVKIFK 543

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              + E  + +    + E  L  +   +   G  ID+  + KL + +    + ++  + +
Sbjct: 544 ERFSMEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281
           L +G   +      L   LF    +D            T   +L            ++  
Sbjct: 604 LAEGNF-NLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQYLIKH 662

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++   GR+        A+ TGR S      QN+P         
Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +     KL+ AD + IE R+LA +A E+  I 
Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF   +DI+  T    F    +++S ++R +GK +   + Y  G    K  A   G+   
Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                       E + +        +           + G   E                
Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                       L     K    I L S+RR             
Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
               +Q +R            +Q  S DI+   M    K          ++L VHDE++ 
Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQINKKFIEMNVPAKMLLQVHDELLF 934

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E        +   +   M         +PL  +      + 
Sbjct: 935 EVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/707 (13%), Positives = 188/707 (26%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQY-- 60
              D ET +   +           A +   ++A +                P  L +   
Sbjct: 346 FAFDTETDALDAMR----------ANLVGLSFAIEPGHADYLPLGHDYPGAPVQLDRVQA 395

Query: 61  -------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
                  L D     V  +  ++  + ++  G+ +       T + +           + 
Sbjct: 396 LAALAPLLEDPAKRKVGQHGKYDLHVLRRH-GVQVHGYA-DDTMLESFVLNSTASRHDMD 453

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L +     +   GK                    A    A      Y   D + 
Sbjct: 454 SLAKRYLGYDTVKYEDVAGKGAKQ---------------IAFSQVAIDDATGYAAEDADI 498

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L               + E  L  +   I   G  +D+  + K  ++++Q   
Sbjct: 499 TLRLHRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQSQVLSQRML 558

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
              +  V L  G   +      L+  LF    +            T +  L         
Sbjct: 559 AAQQKAVALA-GRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALEAIADQHEL 617

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L E V+   GR+  +    GA  TGR S      QN+P  
Sbjct: 618 PRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGA-ATGRLSSSDPNLQNIP-- 674

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G+KL+  D + IE R++A ++
Sbjct: 675 ----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLS 712

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AF+ G D++  T A+ F   +++VS  +R   K +                  
Sbjct: 713 EDPGLLRAFSQGVDVHRATAAEVFGRTLEQVSANERRAAKAIN--------------FGL 758

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A    +     +     + ++
Sbjct: 759 MYGMS------------------------------AFGLARNLGIGRGEAQDYVALYFSR 788

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  V    + + E                                 +     RRL  +D+
Sbjct: 789 YPAVRDFMERMREQARTQGY--------------------------VETLFGRRLYLNDI 822

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                 L        R            +Q  + DI+   M +        +    ++L 
Sbjct: 823 NAKQQGLRAGA---ERAAINAP------MQGTAADIIKRAMVSVDTWLQDHRARALMILQ 873

Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E         +  +   M         +PL  +      +
Sbjct: 874 VHDELVFEVDADFVEILLPEVTWRMAAAAE--LKVPLVVDSGVGDNW 918


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/710 (15%), Positives = 202/710 (28%), Gaps = 166/710 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QS------- 51
            + +D ET     +           A +     A +                        
Sbjct: 349 YVAVDTETTGLDEMR----------ADLVGICLATEPGLACYVPLGHKAAEGEGLFATED 398

Query: 52  ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L DE ++ +  N  ++  + K+  GID+       T +++  
Sbjct: 399 LAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRC-GIDVAPC--DDTMLISYA 455

Query: 103 NGLP---SSLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L+ +    K     GKA+I         +  Y    A+  ++ 
Sbjct: 456 LNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMITFDKVPIDKATRYAAEDADVTLRL 515

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ+           T  +++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 516 WQVLKPQLHAKKVTT--VYETL------ERPLAPVLAKMEMHGIKVDRDTLSRMSSAFAQ 567

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF   G++     +     T   +L      
Sbjct: 568 KMGALEAEIHELA-GERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLEDLATL 626

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       ++L   +    GR+  + Q  GA+ TGR +      QN+
Sbjct: 627 HELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGAN-TGRLASTDPNLQNI 685

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  GK L+  D + IE R+LA
Sbjct: 686 P------------------------VRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILA 721

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF  G+DI+  T ++ F  P+++++ E R   K +               
Sbjct: 722 HIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAIN-------------- 767

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A   ++     +     +
Sbjct: 768 FGVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 797

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+     + TE                                 +     RR+  
Sbjct: 798 FERFPGIKDYMAETTEFGKKNGY--------------------------VQTLFGRRIHT 831

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626
                +            R            +Q  + DI+   M             ++L
Sbjct: 832 P----EIDAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPDAILGLPAKMLL 881

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK--GLPLKAEGYEAKRY 673
            VHDE+V E  +     V  +   +M      A    +PL  +  + + +
Sbjct: 882 QVHDELVFEVDEAAADEVAEVARGVMETAADPAVRIDVPLVVDAGQGRNW 931


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/698 (13%), Positives = 191/698 (27%), Gaps = 155/698 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             +  D ET                   +   ++ + +          D+TE   +  + 
Sbjct: 377 KSVCFDTETTGLDMFTS----------DLVGMSFCFAEGEAYYVSLPEDKTESKEVLREF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
             +  ++ +  +  N  F+ ++     GI++  K    T +        L   +      
Sbjct: 427 KAFFENDRIEKIGQNMKFDLLML-WQYGIELKGK-LFDTMIAHYLVQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            LN+     +   G K       +    +   D               Y   D + T  L
Sbjct: 485 YLNYRTIHFEDLVGAKGKNQADIRTVDINKLCD---------------YAAEDADVTFRL 529

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            + L              + E  L  +  T+   G RID + + +   ++  E  KL+++
Sbjct: 530 KQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLKLEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLI 278
           I +L      +      +   LF    +             T + IL            I
Sbjct: 590 IHQLAGYEF-NVSSPMQVGEILFDRLKLDDKAKKTKTGQYSTSEDILEKLQSKHPIIGKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           ++ L + +S   G++  +     A  TGR S      QN+P      
Sbjct: 649 LDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVA-ATGRLSSTNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I         AD + IE R++A ++G+  
Sbjct: 702 ------------------IRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++AF +G DI+  T AK +  P+++V+ + R   K     + Y               L
Sbjct: 744 MLEAFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISV-----FGLSDRL 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + +          F  +   + +      +  E    + L+G    L           +
Sbjct: 799 SIPRAEAKELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                 +        +      +A  +  +  + ++                        
Sbjct: 850 NSQNSIVRGFAERNAINAPIQGTAADIIKIAMVRIQN----------------------- 886

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                              +L    +QA         M             VHDE+    
Sbjct: 887 -------------------RLENESLQA------KMTM------------QVHDELNFTV 909

Query: 637 PDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           P     ++   +   M         +PL A+      +
Sbjct: 910 PKNELEALQKAVIEEMENAIK--LQVPLIADCGVGANW 945


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/697 (15%), Positives = 192/697 (27%), Gaps = 152/697 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----S 55
           +  ID ET    P            A +   + A                  +P      
Sbjct: 318 RFAIDTETTGLNP----------RHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALE 367

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L D +++ + HN+ F+  + ++  G+   +     T +++ T G       +   
Sbjct: 368 RLAPVLADPSILKIFHNAKFDLHVLERA-GLA-DATPVDDTMLMSYTLGAGRHGHGMDEL 425

Query: 113 CL-ALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L+          G               +  Y    A+      L     +   EA
Sbjct: 426 SALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLR-PRLRTEA 484

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L++ +      ER L  +   +   G  +D   +  +    A+    +  +I +   
Sbjct: 485 ALALYETM------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREI-EKLA 537

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI-TQLAKDLILNRLAS 284
           G   +      L   LF   G+     ++     T  ++L             +L     
Sbjct: 538 GRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQL 597

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   + L   +   D R+  +      + TGR S      QN+P            
Sbjct: 598 QKLKSTYADALVGEIDIADQRVHTSFSQA-ITTTGRLSSNEPNLQNIP------------ 644

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA+ GK L+ AD + IE R+LA +A      ++FA
Sbjct: 645 ------------IRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFA 692

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            GEDI+  T A+ F  P++ +    R   K +                    G+      
Sbjct: 693 KGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYGIS----- 733

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A +  +  +  +    A+ A++  + +   +
Sbjct: 734 -------------------------AFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNE 768

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
             E                                 ++ P  RR     +          
Sbjct: 769 TAEFARTHGY--------------------------VLTPFGRRCYVPGITEKNPARRGY 802

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
                R+            Q  + DI+   M               ++L VHDE+V E P
Sbjct: 803 A---ERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAP 853

Query: 638 DTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   L C++M    S    +PL  E      +
Sbjct: 854 KDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 888


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 194/707 (27%), Gaps = 165/707 (23%)

Query: 8   IETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
           IE  S  PL         A+  +A I   +                              
Sbjct: 345 IEKCSSAPLFGLQTFTSSAHYMEAQIVGISLCVAAGDACYIPLLHDYPDAPEQLNSQWAL 404

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L   L++     V HN  F++ +     GI +    +  T + +           ++ 
Sbjct: 405 EQLTPLLKNSKNQKVGHNLKFDKNVLANH-GITLNGVAY-DTMLESYVLNSVVTKHHIEA 462

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                      +         +   + +  
Sbjct: 463 LSLHYLGHSPITLESIAGKGAKQL---------------TFNQIGLAEAAPFAAENADII 507

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P             + E  L  +   +   G  ID   + +  + +A+    
Sbjct: 508 LRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILH 567

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275
           L+E + ++  G   +   T  L+  LF    +         +  T + +L    +     
Sbjct: 568 LEETVHEMA-GEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPSTGEEVLQELALNYPLP 626

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             I+     +       + L + +    GR+  + Q    + TGR S      QN+P   
Sbjct: 627 KAIMEYRGLTKLKNTYTDKLPKLIDHRTGRVHTSYQQA-ITATGRLSSTDPNLQNIP--- 682

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR   IA  G K+V AD + IE R++A ++ 
Sbjct: 683 ---------------------IRTEEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSS 721

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFANG D++  T ++ F   ++ V+ EQR   K +                   
Sbjct: 722 DSGLLHAFANGLDVHKATASEVFGVALEHVTSEQRRSSKAINF--------------GLI 767

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  +     +     +  ++
Sbjct: 768 YGMS------------------------------AFGLAKQLNIPRGDAQHYMDTYFERY 797

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVLQ  +D  E                                       RRL   ++ 
Sbjct: 798 PGVLQYMQDTREEAKAQGYVKTVF--------------------------GRRLYLPEIT 831

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627
                      +               +Q  + DI+   M            +   +++ 
Sbjct: 832 SSNGARRAGAERAA---------INAPMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQ 882

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E  +    +    +  LM    S A  +PL  E    + +
Sbjct: 883 VHDELIFEIKEQKVDAYSTKIIELMENAVSLA--VPLTVEFDVGENW 927


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/712 (15%), Positives = 198/712 (27%), Gaps = 162/712 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ----------- 50
           + +D ET S  P           QA +      W +    +       Q           
Sbjct: 392 VALDTETTSLNPF----------QAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPL 441

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSS 108
             +   L  +L          N+ ++R++  +  G+ +     + T +            
Sbjct: 442 DQVLGALAPWLSSAAHPKTLQNAKYDRLILLRH-GLPLAGV-VMDTLLADYLRDANAKHG 499

Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L+        F          K                                YC  DV
Sbjct: 500 LELLAQRNFGFLPTSYSELVPKGAN------------------FSAVPMAQAALYCGMDV 541

Query: 168 EATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
             T  L   L    +             E  L  +   +   G RID D + +L   +  
Sbjct: 542 HVTYRLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKA 601

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270
             ++L+ D  +       +      L   LF   G+D            T  ++L     
Sbjct: 602 TLERLESDAKEAAGTDF-NLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLED 660

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L     S      ++ L   + +  GR+         + TGR S      QN
Sbjct: 661 AHPVVPLVLEHRTLSKLKSTYVDALPALMEAETGRVHTDFNQAV-TATGRLSSSNPNLQN 719

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                             S  +R   +   G  L+ AD + IE R+L
Sbjct: 720 IP------------------------VRTEFSRRIRKAFLPEAGWTLISADYSQIELRIL 755

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++GE+  +KA+ +G+D++  T    F+   D+V+ ++R +GK +   + Y  G + F 
Sbjct: 756 AHLSGEEVLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLGKTINFGVIYGMGVQRF- 812

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                    + Q       +   + + +  +     +         + ++G         
Sbjct: 813 ----ARETGVSQAEAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFAFD- 867

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                                                  L     K  + I L  +RR  
Sbjct: 868 ------------------------------------PSGLGRHLGKDPLEIELEVARR-- 889

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYD 623
                          +Q +R            +Q  S DI+   M    +          
Sbjct: 890 -----------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQQRLTESALPAR 932

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
           ++L VHDE+V E       +V  L    M +  +    +PL  E      + 
Sbjct: 933 LLLQVHDELVLEAAPEALETVLNLTRETMERAVT--LSVPLVVETGVGPNWM 982


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 199/717 (27%), Gaps = 178/717 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
             + +D+ET +   +             +   + A             +           
Sbjct: 337 RVIAVDVETDALSAVAS----------RLVGVSLATAPNEACYIPLGHEGGDLADGGMKP 386

Query: 52  ------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                      L   L ++ ++ V  N  ++  +F++     +    +  T +++     
Sbjct: 387 DQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRY---GVRVAPYDDTMLISYVQAA 443

Query: 106 P---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                    +       +   E
Sbjct: 444 GLHNHGMDELAERHLGHTCISFKEVCGTGKSQ---------------KRFSEIDLKTATE 488

Query: 162 YCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L                ER L  +   +   G ++D+  + +L  
Sbjct: 489 YAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSS 548

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267
             AQ+  + +E   KL      +      +   LF   G+     ++     T  ++L  
Sbjct: 549 DFAQKMAEAEETAHKLAGTKF-NLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAAVLDE 607

Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVF 325
                      +L     S       + L +A++ + GR+  +     A+ TGR S    
Sbjct: 608 LAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLA-ATTTGRLSSSEP 666

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R    A  G  +V AD + IE
Sbjct: 667 NLQNIP------------------------IRTEEGRKIREAFTAEPGHVIVAADYSQIE 702

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA IA  +   +AF  G+DI+  T ++ F  P++ +    R   K +          
Sbjct: 703 LRLLAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAIN--------- 753

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   A    +     + 
Sbjct: 754 -----FGIIYGIS------------------------------AFGLANNLGIGRDEAKS 778

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              ++  K  G+      + +                                       
Sbjct: 779 YIDSYFKKFPGIKDYMDAMKDEAKAKGCVSTIF--------------------------G 812

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG 621
           RR+    +K     +   T    R+           +Q  + DI+   M       +  G
Sbjct: 813 RRIHLPGIKDKNPSVRQFT---ERQAINAP------IQGAAADIIRRAMVRMPGALSDAG 863

Query: 622 Y--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE+V E P++    V  L   +M+    P+    +PL+ E   A  +
Sbjct: 864 LKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEAKAASTW 920


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/717 (14%), Positives = 201/717 (28%), Gaps = 180/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET               + A +   + +  D                       
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + S     L +  +  +  +  ++  +FKK  GI+I   +   T + +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L       +   GK                    +    A     +Y   
Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  LF R     +            E     +   +   G  ID D + +L +   
Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270
           ++   L  +  ++ D    +      L   LF   GI     ++     T +++LS    
Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             +  D++L   + S       +TL+ A    GR+  +      + TGR S      QN+
Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G+ ++ AD + IE R++A
Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             +G++  I+AF +  DI+  T A+     I +V+  +R   K +               
Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     ++ ++                                    +   K +
Sbjct: 782 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 810

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++  +L+  +        +      +                           R+L  
Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626
            D++     +  A     R             Q  + +I+   M        K+   ++L
Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673
            VHDE+V E        +G L    M    +       WA    +P   E    + +
Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPFVVEIGIGENW 952


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/674 (16%), Positives = 200/674 (29%), Gaps = 125/674 (18%)

Query: 26  EQAVITLCAYAWDDEP--VKLWDRTEQS-------AMPSDLLQYLRDETVMCVAHNSLFE 76
            QA +      W ++P  +       +         +   L   L  +    V  N+ F+
Sbjct: 7   RQADLVGIGCCWGNQPTDIAYIPIGHKQGNQLKKQKVLDSLRTILESKNYPKVFQNTKFD 66

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLAL--NFSEHLTKME-EGKAL 131
           R++FK   GI++       T + +          L   C       +    K    GK  
Sbjct: 67  RLIFK-HQGINLDGV-VFDTMLASYVLHPEKSHKLSELCEQYLEGITSQNYKELGIGKKQ 124

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                    D           + A+  F        E  +++      L + E+ L  + 
Sbjct: 125 ------TIADLEIDKVAEYCGMDAYATFLLVEPLKNEL-KQVSSLEKLLLEVEQPLEAVL 177

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             + D G  ID + + +L + + ++   L+E   ++  G   +      L   LF    +
Sbjct: 178 SIMEDTGILIDTEYLGELSKQLEKDLLILEEKAYEVAGGKF-NLGSPKQLGEILFEKLEL 236

Query: 252 DLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRL 305
           +            T  + L          D IL     S      ++ L E V     R+
Sbjct: 237 NRKKSRKTKTGYSTDHATLDKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDTKTKRI 296

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                    + TGR S      QN+P                             S  +R
Sbjct: 297 HTNFNQSV-TATGRLSSSNPNLQNIP------------------------IRTEFSRQIR 331

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              I      LV AD + IE R+LA ++ E   + A+ N ED++  T    F    +K++
Sbjct: 332 QAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF--EKEKIT 389

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
            ++R +GK +   + Y  G++ F   A      +             + + +   +   M
Sbjct: 390 SQERNLGKTINFGVIYGMGSQRFAREA-----GVTAAEGKEFINKYRQRYAKVFEYLESM 444

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
           + +         ++G                           +     +  +I   ++  
Sbjct: 445 KKEAIANGYVTTILGRRRY---------------FNFFDDNLYRFRGHDPQTIDLNQL-- 487

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                                             +N   SQL+R            +Q  
Sbjct: 488 ---------------------------------NINYNDSQLLRAAANAP------IQGS 508

Query: 606 SRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKG 660
           S DI+   M    +       +++L VHDE+V E P   +  +   +   M         
Sbjct: 509 SADIIKIAMVKIQEILNHCQANLLLQVHDELVFEIPVKEWEKLENKIKETMENAVK--LT 566

Query: 661 LPLKAEGYEAKRYR 674
           +PL  E +  K + 
Sbjct: 567 IPLVVEIHAGKNWM 580


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 352 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 402 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 460 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 504

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 505 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 565 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 679 --------------------VRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 824

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 886 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/700 (16%), Positives = 202/700 (28%), Gaps = 154/700 (22%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMP 54
           M +  +  D ET    PL           A +   A++W+          E       + 
Sbjct: 370 MKQTSVCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPEDQDQAQELI 419

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +  DE +  +  N  ++  + +K   I I    +  T +           ++   
Sbjct: 420 EQLRPFFEDEKIEKIGQNLKYDIKVLRKYNLI-IKG-AYFDTMLAHYLINPDMRHNMDVL 477

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN++        GK    +                      +   EY   D + T 
Sbjct: 478 AETYLNYTPISITELIGKKGKNQLS--------------MRQVPIEKQTEYAVEDADITY 523

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +L     P            D E  L  +   +   G  +D+D +  L E +  + K L+
Sbjct: 524 QLASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLE 583

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKD 276
             I +       +      L   LF    + D    ++     T + +LS+         
Sbjct: 584 TSIYEAAGEEF-NIASPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIK 642

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            IL     +      ++ L + V    GR+        A  TGR S      QN+P    
Sbjct: 643 NILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP---- 697

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       VR   +       L+ AD + IE R++A ++ 
Sbjct: 698 --------------------IRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSD 737

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           E   I+AF NGEDI+ +T +K FN P+D+V++EQR+  K +   + Y             
Sbjct: 738 ETTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVS-----AFGLS 792

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
              DL +        + +E + + + +   + D   +      ++G    L     R   
Sbjct: 793 NQTDLSRGESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAV 852

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                    +               +                          ++   ++ 
Sbjct: 853 ---------VRSAAERNAVNAPIQGSAADII---------------------KIAMINIH 882

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
              +  N  T                                       ++L VHDE+V 
Sbjct: 883 KKLTGGNFKTK--------------------------------------MLLQVHDELVF 904

Query: 635 ETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           +   T    V  L    M    S A  +PL  E      +
Sbjct: 905 DAHKTELEEVRALIKTEMENAYSLA--VPLDVEIGTGDNW 942


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/712 (13%), Positives = 196/712 (27%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676

Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                   L + ++  R   +       + L   ++   +   T     ++ TGR S   
Sbjct: 677 DLAAEGHPLLRKIVDWRQ-LTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSD 735

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R+  IA  G KL+ AD + I
Sbjct: 736 PNLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQI 771

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y   
Sbjct: 772 ELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG-- 829

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + +        + FE +   + +    +    E    + + G    
Sbjct: 830 ---ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGR--- 883

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R  +  +      +               A                        
Sbjct: 884 ------RTHYPDIRASNPQVRAFNERAAINAPIQGAAADII------------------- 918

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
             R     ++   +  N                       ++       +          
Sbjct: 919 --RRAMIRMEDALAKEN-----------------------LAA----RMLLQVHDE---- 945

Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                  ++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 946 -------LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/704 (14%), Positives = 200/704 (28%), Gaps = 162/704 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET S            A+QA +   ++A                       + A+
Sbjct: 381 IAFDSETTSID----------AQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAV 430

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109
            + L   L D     V  ++ ++  +       I +    +  T + +           +
Sbjct: 431 LNALKPILEDPAKAKVGQHAKYDINVLANASTPIMVQGVAF-DTMLESYVLDSTATRHDM 489

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     LN S    +   GK                         A +  G Y   D +
Sbjct: 490 DSLALKYLNHSTIRFEDIAGKGAKQL---------------TFDQIALEQAGPYAAEDAD 534

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L    +            E  L  +   I   G  +D  L+ +    + ++ 
Sbjct: 535 VTLRLHQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKL 594

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272
            +L+    ++      +      L + L+   G  ++  +      T +++L+       
Sbjct: 595 VELERKAFEIAGEEF-NLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDY 653

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +++   + S       + L E ++   GR+  +     A  TGR S      QN+P
Sbjct: 654 ELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 712

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  G KL+ AD + IE R++A 
Sbjct: 713 ------------------------IRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAH 748

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  + AF    D++  T A+ F  P+D+V+ +QR   K +   L Y          
Sbjct: 749 LAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMS-----AF 803

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                +D+++          F  +    ++    + Q  E    + + G    L      
Sbjct: 804 GLAKQIDVERKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYL------ 857

Query: 512 AKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                +    + + +G     +      +A  +     + +    +D  I          
Sbjct: 858 ---PEIHAQNQAMRKGAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGID--------- 905

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                              +R I              +VL    
Sbjct: 906 -----------------------------------ARII-----LQVHDE---LVL---- 918

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               E  +     V   L SLM+        +P+  E      +
Sbjct: 919 ----EVREELINEVSAKLKSLMSGAAD--LDVPMLVEVGVGANW 956


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/691 (14%), Positives = 203/691 (29%), Gaps = 140/691 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             +  D ET S   L          +A +   A++W+           D+TE   +    
Sbjct: 367 KSVCFDTETTSLNAL----------EAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPF 416

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +     +  + HN  ++  + +    I +       T +           ++      
Sbjct: 417 KAFFEHPEIEKIGHNLKYDLKVLRNY-DIHVK-APLFDTMIAHYLINPDMRHNMDILAET 474

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--TRE 172
            LN+S        GK    +     +                    EY   ++    T E
Sbjct: 475 YLNYSAQSITELIGKKGKNQGTMREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLE 534

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L++++      E  L  +   +   G  +D+  +  L   +A++ +KL+  I ++  G  
Sbjct: 535 LYQKV------ELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVA-GEN 587

Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L + LF    + D    ++     T + +LS+          IL+  +    
Sbjct: 588 FNLASPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDILDWRSLQKL 647

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   ++   GR+        A  TGR S      QN+P               
Sbjct: 648 QNTYVDALPNEINPKTGRVHTIYNQAVA-ATGRLSSNNPNLQNIP--------------- 691

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            VR   I       L+ AD + IE R++A ++G++  + AF N 
Sbjct: 692 ---------IRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGMLSAFQNN 742

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T +K FN P+++V++EQR   K +   + Y                +L +    
Sbjct: 743 EDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVS-----AFGLSQQTNLNRSEAK 797

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
               + +  + +  S+     D   +      ++G          R   + +      + 
Sbjct: 798 ELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGR---------RRYLKDINSQNAIVR 848

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                               + +N    
Sbjct: 849 GAAER-----------------------------------------------NAVNAPIQ 861

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPYFS 643
                     KL    +Q                  +   ++L VHDE+V + P     +
Sbjct: 862 G---SAADIIKLAMIAIQ-----------NRLENKNWKSKMLLQVHDELVFDVPKEEINT 907

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +   M         +PL  +      +
Sbjct: 908 LQEMVKKEMENAFE--INVPLIVDIGIGNNW 936


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/701 (13%), Positives = 191/701 (27%), Gaps = 163/701 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
            L ID ET   +P+          +A +   +++  +             E   + ++L 
Sbjct: 381 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPPIREEALKIVNELR 430

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E  + V  N  ++ I+ +    I +       T +        L  ++       
Sbjct: 431 PLYENEKSLKVGQNIKYDMIVLQNYE-IQVKG-PLFDTMLAHYVLQPELRHNMDYLAEIY 488

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++         G              P     +     + +    Y   D + T +L  
Sbjct: 489 LHYQTIHIDELIG--------------PRGKNQKNMRDLSPEEVYRYACEDADVTLKLKN 534

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L  +   I   G R+D + + +  E      ++++++I 
Sbjct: 535 ILEKELKEQGGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIY 594

Query: 226 KLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            L D    +      +   LF                  T + +L            IL 
Sbjct: 595 ALADETF-NIASPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILE 653

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      +++L + ++   G +  +      + TGR S      QN+P        
Sbjct: 654 YRGLKKLLSTYIDSLPQLINPRTGHIHTSFNQAV-TATGRLSSSNPNLQNIP-------- 704

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   I  +G +   AD + IE R++A ++ +   I
Sbjct: 705 ----------------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMI 748

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF +G DI+  T AK + T I  V+ + R   K                      G+ +
Sbjct: 749 DAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANF--------------GIIYGISV 794

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              ++                                 +     + +   +   +  V +
Sbjct: 795 FGLAER------------------------------MNVSRQEAKELIDGYFETYPQVKE 824

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                                                         R+    D+    + 
Sbjct: 825 YMDRSIRIARENGYVETIFH--------------------------RKRFLPDINSRNAV 858

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M +  +          ++L VHDE+ 
Sbjct: 859 VRGYA---ERNAINAP------IQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELN 909

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              P +    V  +    M     ++  +PLKA+    K +
Sbjct: 910 FSVPASEKEIVQKIVIEEMEHA--YSMHVPLKADCGWGKNW 948


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/705 (14%), Positives = 195/705 (27%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L DET   V  +  ++  +F    GI +       T + +        
Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                         A     EY   
Sbjct: 464 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 508

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  +D + + +    + 
Sbjct: 509 DADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELG 568

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q    L+++   L      +      +    F    + +V  +      T + +L     
Sbjct: 569 QRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 627

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 628 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 686

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 687 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 722

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++G+D  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 723 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 777

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 778 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 833

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +           
Sbjct: 834 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 875

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               +G  +     T    R           ++Q                    +VL   
Sbjct: 876 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 902

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                E P      V   L  LM    S    +PL AE      +
Sbjct: 903 -----EVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 940


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/720 (16%), Positives = 202/720 (28%), Gaps = 167/720 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------- 50
           +  + ID ET +  P            A +      W +    +                
Sbjct: 385 LKPVAIDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAALLDA 434

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                    A+   +  +L          N+ ++R++  +  G+ +     + T +    
Sbjct: 435 DAACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALEGV-VMDTLLADYL 492

Query: 103 NGL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   L+         +        GK                         A    
Sbjct: 493 RDAAAKHGLEVMAEREFKITPTGFSELVGKGQ------------------TFADVAIPTA 534

Query: 160 GEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVL 207
             YC  DV  TR L  RL    +             E+ L  +   +   G RIDL  + 
Sbjct: 535 SLYCGMDVHLTRRLAIRLRAQLENMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLK 594

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262
           +L   +    +KL++   +   G+  +      L   LF   G++            T  
Sbjct: 595 ELSIELGNTLEKLEQQAQEAA-GVNFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDA 653

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
           ++L           L+L     S      ++ L + V S  GR+         + TGR S
Sbjct: 654 NVLEKLEADHPVVPLVLEHRVLSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLS 712

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                             S  +R   +     KL+ AD 
Sbjct: 713 SSNPNLQNIP------------------------IRTEFSRRIRKAFLPQENWKLLSADY 748

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+L  ++GE+   +AF NG+D++  T         D+VS+++R +GK +   + Y
Sbjct: 749 SQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFGVIY 806

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             GA+ F          L Q       +   + + +  +     +         + L+G 
Sbjct: 807 GMGAQRF-----SRSTGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLGR 861

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                                                          L     K  + I 
Sbjct: 862 RRPFHFDR-------------------------------------NGLGRLLGKDPMDID 884

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
           L  +RR                 +Q +R            +Q  S DI+   M       
Sbjct: 885 LDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQL 925

Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
                   ++L VHDE+V E   T    V  L    M K       +PL  E      + 
Sbjct: 926 TAADLPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKAVE--LSVPLVVETGTGDNWM 983


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/691 (15%), Positives = 196/691 (28%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + ID ET S  P+          +A +   +   +                     +  +
Sbjct: 331 VSIDTETTSLNPM----------EAELVGLSLCTEPGHAAYIPLAHHYQGVPSQLNREQV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
              L  +L +  +  V  N  ++R +F    G+ +       T + +      L   L +
Sbjct: 381 LQRLKPWLENSDIPKVGQNLKYDRHVFANH-GVMLNGIA-HDTLLQSYVLESHLSHDLDS 438

Query: 112 ACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L+          GK    I         +  Y    A+       F  Y     +
Sbjct: 439 LARRHLDIQTISYDDVTGKGAKRIGFEQVEIQQAGIYAAEDADIPLRLHHF-LYPIISKD 497

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A              E  L  +   I   G  +D DL+ +    +A++   L++      
Sbjct: 498 A-----HLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQAH-SL 551

Query: 229 DGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            G   +   T  ++  LF    +         +  T + +L    +      ++L+  + 
Sbjct: 552 AGRAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQLALDYPLPKILLDYRSL 611

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +      ++ L + V+   GR+        A  TGR +      QN+P            
Sbjct: 612 AKLRSTYIDKLPQMVNRQTGRVHTNYAQAVA-VTGRLASNDPNLQNIP------------ 658

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  ++ AD + IE R++A I+ +   I+AF 
Sbjct: 659 ------------VRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFL 706

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G+DI+  T A+ F   + +V+ EQR   KV+   L Y               L + + +
Sbjct: 707 GGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMS-----EFGLATQLGIDRSA 761

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +     +    ++   +    + ++G   +L           +     +
Sbjct: 762 ARAFIDRYFARYPGVADYMQRTRELARQNGYVETVLGRRLQL---------PDIRSSQHN 812

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
              G                                       +L    V          
Sbjct: 813 RRMGAERAAINAPMQGTAADII---------------------KLAMISVH--------- 842

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
             Q          L +  +Q+         M         +VL        E  +   F 
Sbjct: 843 --QW---------LVKAPLQS------KLIM-QVHDE---LVL--------EVIEDELFV 873

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V   L  LM         +PLK E    K +
Sbjct: 874 VKENLIILMENTFK--LDVPLKVEVGVGKNW 902


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 200/695 (28%), Gaps = 138/695 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ-------SAMPSDL 57
           D ET + +P            A +      W    + V       +         +   L
Sbjct: 392 DTETTALEP----------RDADLVGIGCCWGMQPDEVAYIPLGHKTGENLHKDLVLEGL 441

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L          N+ F+R++ K   GI++         + +         +L +    
Sbjct: 442 RPILESADYPKALQNAKFDRLVLK-CQGINLAGV-VFDPMLASYILNPDSSHNLMDLGQR 499

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L            K       K   D           + A+  FG   K   E   ++ 
Sbjct: 500 YLGLIAKSYLDLVPKG------KTIADIDIPSVADYCGMDAYSTFGLVPKLREEL-DKIP 552

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                L + E+ L  +   +   G RI+   + +L + +  E  +L E+  K+  G   +
Sbjct: 553 TLSKLLVEVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATKIA-GENFN 611

Query: 235 SRQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 L   LF   G+                 TL+ +        +  + I+     S
Sbjct: 612 LGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFV--EAIIEYRTLS 669

Query: 286 GSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 ++ L   V  D  R+        A+ TGR S      QN+P             
Sbjct: 670 KLKSTYVDALPALVRPDTQRVHTDFNQA-ATSTGRLSSSNPNLQNIP------------- 715

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                           S  +R   +   G  +V AD + IE R+LA ++ E   ++A+  
Sbjct: 716 -----------IRTAFSRQIRKAFLPEAGWLMVAADYSQIELRILAHLSQEPILVQAYQQ 764

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            ED++  T    F    +K++ E+R I K +   + Y  G+  F          + +   
Sbjct: 765 NEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRF-----SRSTGIDKNIA 817

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           N       E + +  ++   ++ +       + ++G              + +     + 
Sbjct: 818 NEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGRRR--YFDFTNNSLRRLKGSNPED 875

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            +                                                     L    
Sbjct: 876 ID-----------------------------------------------LSKLKNLGPYD 888

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTP 640
           + L+R            +Q  + DI+   M    +        ++L VHDE+V E P   
Sbjct: 889 AGLLRSAANAP------IQGSNADIIKIAMVRLHEVLKNYQARLLLQVHDELVFEIPPDE 942

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +  +   + S+M         +PL  E    + + 
Sbjct: 943 WEELQPQIKSVMENAVQ--LSVPLLVEARVGENWM 975


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET     L             +   ++A                          +
Sbjct: 35  FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 84

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D+  + V  N  F++ +  +  GID+    +  T + +           + 
Sbjct: 85  LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 142

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 143 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 187

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   L P             + E  L  +   I   G  ID ++++   + +     
Sbjct: 188 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILVAHSKELTIRLD 247

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L +    +      L++ L+    + ++  +      T + +L+   +    
Sbjct: 248 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 306

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 307 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 363

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G +++ AD + IE R++A ++
Sbjct: 364 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 401

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F   ++KV+ EQR   K +   L Y            
Sbjct: 402 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 456

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E      L G    L     R  
Sbjct: 457 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 516

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +      + +                  
Sbjct: 517 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 554

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 555 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 576

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+ +        +  LM ++   A  +PLK +      +
Sbjct: 577 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 608


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 46  AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 95

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 96  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 153

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 154 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 198

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 199 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 258

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 259 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 317

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 318 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 372

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 373 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 412

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 413 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 467

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 468 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 518

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 519 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 550

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 551 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 579

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 580 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 616


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/712 (13%), Positives = 196/712 (27%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                   L + ++  R   +       + L   ++   +   T     ++ TGR S   
Sbjct: 661 DLAAEGHPLLRKIVDWRQ-LTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSD 719

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R+  IA  G KL+ AD + I
Sbjct: 720 PNLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQI 755

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y   
Sbjct: 756 ELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG-- 813

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + +        + FE +   + +    +    E    + + G    
Sbjct: 814 ---ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGR--- 867

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R  +  +      +               A                        
Sbjct: 868 ------RTHYPDIRASNPQVRAFNERAAINAPIQGAAADII------------------- 902

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
             R     ++   +  N                       ++       +          
Sbjct: 903 --RRAMIRMEDALAKEN-----------------------LAA----RMLLQVHDE---- 929

Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                  ++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 930 -------LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/691 (15%), Positives = 187/691 (27%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S            A +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------AYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  +V AD + IE R++A ++ +   +K F 
Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 190/705 (26%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + + +           +             
Sbjct: 358 VCIDTETTSIDPML----------AQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQL 407

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L D     V  +  ++  +F    GI +       T + +        
Sbjct: 408 SREAVLARMKPWLEDAARKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 465

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                               EY   
Sbjct: 466 HGMDALAERVLHLKTITYEEVCGKGASQIG---------------FDEVPLDRATEYAAE 510

Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  ID + + +    + 
Sbjct: 511 DADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLG 570

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q   +L++    L      +      +    F    + ++  +      T + +L     
Sbjct: 571 QRLLELEQQAYALAGQPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAE 629

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 630 DYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 688

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 689 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 724

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ ++  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 725 AHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 779

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 780 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWL---- 835

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +           
Sbjct: 836 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 877

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                G  S          R+          ++Q                          
Sbjct: 878 ----DGSPSAGKPGAPMRTRQ----------VMQ-------------VHDE--------- 901

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +V E P      V   L  LM    S    +PL AE      +
Sbjct: 902 --LVLEVPQEELSLVRERLPELMCGVAS--LRVPLVAEVGVGANW 942


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 192/695 (27%), Gaps = 152/695 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDL 57
           +L ID ET S +          A  A +   A++W+            D T    +   L
Sbjct: 354 RLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERL 403

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              LR      V  N  ++ ++  +  G+++P   +  T V         P +L      
Sbjct: 404 APILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQ 460

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +         G     +  +                      G Y   D +   +L 
Sbjct: 461 YLRYQMVAITELIGSGRDQKSMRDVS---------------IDEVGPYACEDTDIALQLA 505

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L              + E  L  +   +   G  ID  ++ ++ + +  E  +L+  I
Sbjct: 506 DVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKI 565

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280
            ++      +      L   LF   G+            T +S+L           LIL+
Sbjct: 566 YEVAGVEF-NIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILD 624

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      ++ L   +    GR+  T      + TGR S      QN+P        
Sbjct: 625 WRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTV-TATGRLSSSNPNLQNIP-------- 675

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +   G KL+ AD   IE R+LA ++G++   
Sbjct: 676 ----------------VRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G+DI+  T A+ F  P ++V+ EQR   K++   + Y               L  
Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYG-----ISAWGLAQRLRC 774

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                          +     +   + ++  +    + L+G          R     +  
Sbjct: 775 STREAQELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGR---------RRYVPNINS 825

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +        +         +                         +L    +      
Sbjct: 826 RNRAERSMAERIAVNMPIQGTQADMI---------------------KLAMVHIYHRLQR 864

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                             M           L VHDE+V E P  
Sbjct: 865 EGYRAK----------------------------ML----------LQVHDELVFEMPPE 886

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  L    M +     +G+P++ +      +
Sbjct: 887 EVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/691 (15%), Positives = 188/691 (27%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L        +  G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTVIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  +V AD + IE R++A ++ +   +KAF 
Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 188/700 (26%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 356 FAFDTETDGLDTLT----------ANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYV 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  F+  L  +   I +    +  T + +           + 
Sbjct: 406 LETLKPLLEDEKALKVGQNLKFDMGLLARY-DITLRGIAF-DTMLESYVLDSVGGRHDMD 463

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +    Y   D + 
Sbjct: 464 SLSDRYLGHKTVTFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADV 508

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   + P             + E  L  +   I   G  ID  ++      + +   
Sbjct: 509 TLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQSILATHSIELTKRLA 568

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L +    +   T  L+  L+    + ++  +      T + +L+   +    
Sbjct: 569 ELEIQAHELAEEPF-NLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPL 627

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 628 PKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 684

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 685 ----------------------VRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLS 722

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  +KAFA G+DI+  T A+ F   +DKV+ EQR   K +   L Y            
Sbjct: 723 QDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMS-----AFGL 777

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L        
Sbjct: 778 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVSTLDGRRLYL-------- 829

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              V        +                                        +    +V
Sbjct: 830 -PDVSSSNGMRRKAAERAAINAPMQGTAADII---------------------KRAMIEV 867

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                  +               L   I+Q                    +V  +H E V
Sbjct: 868 DAWLQGQDEP-------------LVRMIMQ-------------VHDE---LVFEIH-ESV 897

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E           +  LM  + + A  +PLK +      +
Sbjct: 898 IEASS------QRIRELMENSMTLA--VPLKVDVGVGANW 929


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 192/701 (27%), Gaps = 138/701 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50
            + +D ET S  P+           A +        +E   +       Q          
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQLS 431

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + S L  ++ D        NS F+R +F    G+D+    +  T +           
Sbjct: 432 IEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L      L  F     K   GK       K        + +       +  F       
Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDINEASIYCGYDVFLTFKIVKIFK 543

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++E  + +    + E  L  +   +   G  ID+  + KL + +    + ++  + +
Sbjct: 544 ERFSKEKDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFE 603

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281
           L      +      L   LF    +D            T   +L            ++  
Sbjct: 604 LA-DENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQHLIKH 662

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++   GR+        A+ TGR S      QN+P         
Sbjct: 663 RTISKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +     KL+ AD + IE R+LA +A E+  I 
Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF   +DI+  T    F    +++S ++R +GK +   + Y  G    K  A   G+   
Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                       E + +        +           + G   E                
Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                       L     K    I L S+RR             
Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
               +Q +R            +Q  S DI+   M    K          ++L VHDE++ 
Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNFPAKMLLQVHDELLF 934

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E        +   +   M         +PL  +      + 
Sbjct: 935 EVEPDSLEITTKLVKKTMENCVK--LNVPLLVDIGIGDNWM 973


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +      I +       T + +          + + 
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVVESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID   +      IA    +L
Sbjct: 496 QLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIEL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           + +  +L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y              
Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMS-----AFGLAS 764

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    +    E    + + G    L          
Sbjct: 765 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL---------P 815

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                 A++ +L M      +                 
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 857

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                                          RD L   M           + VHDE+V E
Sbjct: 858 -------------------------------RDQLASRMI----------MQVHDELVLE 876

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE      +
Sbjct: 877 VPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 192/701 (27%), Gaps = 138/701 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50
            + +D ET S  P+           A +        +E   +       Q          
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + S L  ++ D        NS F+R +F    G+D+    +  T +           
Sbjct: 432 IEDVFSKLRNWIEDPRKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L      L  F     K   GK       K        + +       +  F       
Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIGEASIYCGYDVFLTFKIVKIFK 543

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++E  + +    + E  L  +   +   G  ID+  + KL + +    + ++  + +
Sbjct: 544 ERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281
           L      +      L   LF    +D            T   +L            ++  
Sbjct: 604 LA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++   GR+        A+ TGR S      QN+P         
Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +     KL+ AD + IE R+LA +A E+  I 
Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF   +DI+  T    F    +++S E+R +GK +   + Y  G    K  A   G+   
Sbjct: 758 AFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                       E + +        +           + G   E                
Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                       L     K    I L S+RR             
Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
               +Q +R            +Q  S DI+   M    K          ++L VHDE++ 
Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLF 934

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E        +   +   M         +PL  +      + 
Sbjct: 935 EVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGTGDNWM 973


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 187/701 (26%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET S   L           A I   ++A                          +
Sbjct: 352 FAFDLETDSLDTL----------SANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L D     V  N  F+R + K+   I++   R+  T + +           + 
Sbjct: 402 LARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRF-DTMLESYALNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      +   GK                      +  A +    Y   D + 
Sbjct: 460 TLASRWLNHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   I   G  I   ++    + +     
Sbjct: 505 TLQLHVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L      +      L+  LF   GI     +      T + +L+   +    
Sbjct: 565 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA+ +DI+  T A+ F   +DKVS EQR   K +   L Y            
Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++            FE +     +    ++   +      L G    L        
Sbjct: 774 SRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                               
Sbjct: 826 -PDIKASNAMRRKAAERAAINAPMQGTA-------------------------------A 853

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                 +      L ++ +   K+   I+Q                    +V  VH    
Sbjct: 854 DIIKRAMIAVDRWLEQQPSPEVKM---IMQ-------------VHDE---LVFEVH---- 890

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +    + +LM  +      +PL+ +      +
Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/560 (35%), Positives = 293/560 (52%), Gaps = 14/560 (2%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A  DEPV +WD T    +P  L + +
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAI 61

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D   +   HNS F+R + +  +  +     RW  T V A  +GLP +L   C  L   +
Sbjct: 62  ADPDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQ 121

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE+ KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPK 181

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +    +TDG ++++ Q
Sbjct: 182 WNYKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQ 241

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  RL +S ++  K  +L +
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRMADPDLPSAVKELLAIRLQASTTSTSKYKSLMK 301

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR    ++ + + I+AL  G       
Sbjct: 302 GVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFD 361

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CI+A  GKKLVV+DL+ IE R LAW+AGE WK+ AF         D+Y
Sbjct: 362 NIMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLY 421

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
              YA+AFN   D V K QR IGKVMEL LG+ GG   F T A   GLDL + +      
Sbjct: 422 KLAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPN 481

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              +   +A++ +     +   + + +++   AC+ +K+ WR  H      W +L     
Sbjct: 482 IPRDVIREAKNWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540

Query: 530 CVVQEGGSISARRVANVPRL 549
             +      +  R++  P  
Sbjct: 541 AAIATPTKDAVLRLSESPPR 560


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 183/710 (25%), Gaps = 170/710 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QS------------ 51
            D ET    PL           A +   + A                             
Sbjct: 341 FDTETTGLDPLR----------AKLVGVSLALAPGRACYIPVMHSSGEAQGDLLGGPSAD 390

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                    + + L   L D  V+ V HN  ++  +     G+ +  + +  T +L+   
Sbjct: 391 APKLIPAADILARLKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVL 447

Query: 104 G---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   L   CL  L           G                               
Sbjct: 448 DGASHGHGLDELCLLHLGHRNISFAEVCGSGRNQ---------------VTFDRVPLDKA 492

Query: 160 GEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
             Y   D + T  L   L P              ER L  +   +   G ++D   ++ L
Sbjct: 493 CAYAAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMAL 552

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
            E   +   +L+ ++V L +G   +      L   LF    +     ++     T   +L
Sbjct: 553 SEDFGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVL 612

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                       +L+    S       + L   ++   GR+  +     A+ TGR S   
Sbjct: 613 EDLAHLHPLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYALA-ATTTGRLSSSD 671

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +A  GK+L+ AD + I
Sbjct: 672 PNLQNIP------------------------IRTEEGRKIRHAFVAEPGKRLISADYSQI 707

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A +A  +    AFA+G DI+  T ++ F  P+D +    R   K +   + Y   
Sbjct: 708 ELRLVAHVAEIEGLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGIS 767

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + Q        + F  + +  +     +++  E      L G    
Sbjct: 768 P-----FGLAAQLGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVF 822

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                      G+      +          G             +          I LP+
Sbjct: 823 T---------PGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAM----------IRLPA 863

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           +        +                                       +          
Sbjct: 864 ALVAEGLKARL--------------------------------------LLQVHDE---- 881

Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  +V E P+     +V  +  +M    +    +PL  E   A  +
Sbjct: 882 -------LVLEAPEDETEATVRVVKRVMEAAAT--LSVPLLVEAGIADSW 922


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/688 (15%), Positives = 204/688 (29%), Gaps = 155/688 (22%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS------------------AMPSDLLQYLRDETVM 67
            QA +   A A             +S                     + L   L D +V+
Sbjct: 427 MQAELIGMAIATAPGRAGYIPFAHKSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVL 486

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----SSLKNACLA-LNFSEHL 122
            +A N  ++ ++  +  GID+    +  T +++            +       L  +   
Sbjct: 487 KIAQNLKYDLVIMSRY-GIDVAP--FDDTMLISYVLDAGTPHGHGMDQLAEKWLGHTPLQ 543

Query: 123 TKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIP 179
            K   G  K+ +         +  +    A+  ++ W +              +++RL  
Sbjct: 544 LKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLV--SVYERL-- 599

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               ER L  +   +  RG  +D  ++ +L   +AQ   +L+E+I +L  G   +     
Sbjct: 600 ----ERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLI-GERINIGSPK 654

Query: 240 ALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNT 294
            L   LF   G+     ++     T   +L             I++    +       + 
Sbjct: 655 QLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDA 714

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   +  D R   T     A+ TGR S      QN+P                       
Sbjct: 715 LPGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIP----------------------- 751

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R+  IA  G +LV AD + IE RVLA +A      +AFA+G DI+  T +
Sbjct: 752 -VRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITAS 810

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           + FN P++ +  E R   K +                    G+                 
Sbjct: 811 EMFNVPVEGMPSEVRRRAKAINF--------------GIIYGIS---------------- 840

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                             A +  +         K +  +  G+    ++           
Sbjct: 841 --------------AFGLANQLSIPREEASNYIKKYFERFPGIRDYIEETKAYAREHG-- 884

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                    +     RR+ Y D++     +        R     
Sbjct: 885 ------------------------FVETIFGRRIHYPDIRSSNPSIRAF---NERASINA 917

Query: 595 GKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                   Q  + DI+   M    +          ++L VHDE++ ET +    +   + 
Sbjct: 918 RL------QGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVV 971

Query: 649 S-LMTKN--PSWAKGLPLKAEGYEAKRY 673
             +M     P+ +  +PL  +   A  +
Sbjct: 972 RHVMENAAMPAVSMSVPLHVDARAANNW 999


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 302 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 351

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 352 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 409

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 410 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 454

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 455 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 514

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 515 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 573

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 574 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 628

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 629 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 668

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 669 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 723

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 724 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 774

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 775 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 806

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 807 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 835

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 836 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 872


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 198/692 (28%), Gaps = 155/692 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------A 52
            L +D ET S  P+           A +   ++A +                        
Sbjct: 314 ILSVDTETTSKHPML----------AKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLSR 363

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
           + + +   L +  V  V  N  ++ I+  +  GI +    +  T + +          SL
Sbjct: 364 VIALIRPLLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLGF-DTMIASHLLNPSQRGHSL 421

Query: 110 KNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                  L+      K   G  K  I         +  Y    A+           C   
Sbjct: 422 DKIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDAD-------ITLLCHGI 474

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           ++   +    L  ++  E  L  +   +   G ++D   + +L +   QE   L+  I  
Sbjct: 475 LKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTLETQIYA 534

Query: 227 LTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNR 281
           L  G   +   +  L   LF    +             T   +L+         + IL  
Sbjct: 535 LA-GETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELPEKILRY 593

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            +         + L E +    GR+  +      + TGR S      QN+P         
Sbjct: 594 RSLGKLKSTYSDALQELIHPETGRIHTSFNQA-ITATGRLSSSDPNLQNIP--------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +   G  LV AD + IE R+LA  A ++  I+
Sbjct: 644 ---------------IRTNEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQ 688

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           +F N EDI+  T A+ F    + ++++ R                          G+   
Sbjct: 689 SFRNDEDIHTRTAAEVFQAFPEFITEDLRRQA--------------KAINFGIMYGMS-- 732

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                         + A +  +     +    ++ A++ GV + 
Sbjct: 733 ----------------------------AFKLAKEINVTRKTAQTYIDSYFARYAGVKRF 764

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                E      +    +                           R+   +D+      L
Sbjct: 765 IDKTIEQAKTTGEVTTIL--------------------------GRKRRLNDINASNVNL 798

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                   R            VQ  + D++   M N  +          ++L+VHDEI+ 
Sbjct: 799 R---KLAERAAI------NTPVQGSAADLIKLAMINMDRELKKTPLKSRMLLSVHDEIIF 849

Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665
           ETP     ++  L   +M     +A  +PLK 
Sbjct: 850 ETPLAEKEALMDLARQVMEGV--FALKVPLKV 879


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 48  AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 97

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 98  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 156 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 200

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 201 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 260

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 261 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 319

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 320 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 374

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 375 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 414

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 415 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 469

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 470 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 520

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 521 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 552

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 553 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 581

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 582 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/717 (15%), Positives = 196/717 (27%), Gaps = 167/717 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ----------- 50
           + +D ET    P            A +      W   ++ +       +           
Sbjct: 400 IAVDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELSEATPP 449

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                  +   L  +L          N+ ++R++  +  G+ +     I T +       
Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLNGV-VIDTLLADYLRDA 507

Query: 106 --PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                L         F         GK                         A +    Y
Sbjct: 508 AAKHGLDLMSEREFGFRPTTYGDLVGKKQ------------------TFADVAIEPASLY 549

Query: 163 CKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           C  DV  TR L  +L                  E+ L  +   +   G RID+  +  L 
Sbjct: 550 CGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLS 609

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSIL 265
           + +     +L+ D  ++ +    +      L   LF   G+D            T  ++L
Sbjct: 610 DELGSTLNRLETDAKQVAEVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVL 668

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324
                      L+L     S      ++ L + V +  GR+         + TGR S   
Sbjct: 669 EKLENDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSN 727

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                             S  +R   +   G  L+ AD + I
Sbjct: 728 PNLQNIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQI 763

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+L  ++GE+   +A++ G+D++  T         D VS ++R +GK +   + Y  G
Sbjct: 764 ELRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGKTINFGVIYGMG 821

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           A+ F          +         T   + + +  +     +         + ++G    
Sbjct: 822 AQRF-----ARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 876

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                                                       L     K  + I L  
Sbjct: 877 FHFDR-------------------------------------NGLGRLLGKDPLEIDLDV 899

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
           +RR                 +Q +R            +Q  S DI+   M          
Sbjct: 900 ARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAVLLSQ 940

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                ++L VHDE+V E       +   L  + M         +PL  E    + + 
Sbjct: 941 GIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVK--LSVPLVVETGVGRDWM 995


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 194/701 (27%), Gaps = 138/701 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50
            + +D ET S  P+           A +        +E   +       Q          
Sbjct: 382 IVSLDTETNSLNPI----------NAELVGIGLCLGEENDDLFYIPLGHQTKKGTSNQLS 431

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + S L  ++ D        NS F+R +F    G+D+    +  T +           
Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L      L  F   L K   GK       K        + +       +  F       
Sbjct: 490 GLSEISFRLFGFKPPLFKETVGKN------KDFSFVDIDEASIYCGYDVFLTFKIVKIFK 543

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++E  + +    + E  L  +   +   G  ID+  + KL + +    + ++  + +
Sbjct: 544 ESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281
           L  G   +      L   LF    +D            T   +L            ++  
Sbjct: 604 LA-GENFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++   GR+        A+ TGR S      QN+P         
Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +     KL+ AD + IE R+LA +A E+  I 
Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF   +DI+  T    F    +++S E+R +GK +   + Y  G    K  A   G+   
Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                       E + +        +           + G   E                
Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                       L     K    I L S+RR             
Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
               +Q +R            +Q  S DI+   M    K          ++L VHDE++ 
Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNIPAKMLLQVHDELLF 934

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E        +   +   M         +PL  +      + 
Sbjct: 935 EVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/721 (14%), Positives = 188/721 (26%), Gaps = 184/721 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----------QS 51
            + +D ET S  P+             +   + A                          
Sbjct: 403 FVAMDTETTSLDPM----------SCDLVGVSLATAPGRACYIPLRHVASAGPDLLGGGE 452

Query: 52  AMPSD---------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             P+          L   L   +V+ +A N  ++ ++     G+D+       T +++  
Sbjct: 453 PPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLA-CCGVDVAP--IEDTMLISYA 509

Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAW 156
                    L       L           G     I         +              
Sbjct: 510 LDSGRNNHGLDELAKKHLGHECIPFAAVAGSGRSFIGFARVPLDKAT------------- 556

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLV 206
               EY   D +    L++ L P    E            +  +   +  RG  ID +++
Sbjct: 557 ----EYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDRNIL 612

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262
            +L    AQ+  +L+ +I  L  G   +      L   LF   G+     +      T  
Sbjct: 613 SRLSGEFAQDMARLEAEIYDLA-GESFNLGSPKQLGDILFGRMGLPGAKKTATGAWSTSA 671

Query: 263 SILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
           S+L             IL+    S       + L   V+       T     A+ TGR S
Sbjct: 672 SVLEDLAESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVHTSYALAATTTGRLS 731

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                            A   +R   +A  G  L+ AD 
Sbjct: 732 SSEPNLQNIP------------------------VRNEAGRKIRKAFVAEPGHALISADY 767

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA IA      +AFA G DI+  T ++ F  P+  +  + R   K +      
Sbjct: 768 SQIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINF---- 823

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A +  +   
Sbjct: 824 ----------GIIYGIS------------------------------AFGLANQLGIPRE 843

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+                                            
Sbjct: 844 EAAAYIKRYFERFPGIRDYMDKTKRLVREQGVVTTIF----------------------- 880

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               R+  +  +    +          R            +Q  + DI+   M       
Sbjct: 881 ---GRKCHFPRIGSSNASERAF---FERAAINAP------IQGAAADIIRRAMARMDAAL 928

Query: 621 -----GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKR 672
                   +++ VHDE+V E P      ++  +  +M + P  A    +PL+ E   A+ 
Sbjct: 929 ATAGCSARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEARAAQN 988

Query: 673 Y 673
           +
Sbjct: 989 W 989


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/697 (15%), Positives = 201/697 (28%), Gaps = 132/697 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-----------SAM 53
           D ET    P            A +      W      V                   + +
Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGTGENDVAYIPLGHNITSNLEKNLPLNTV 441

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            S L + L          N+ F+R++FK   GI +         + +         +L +
Sbjct: 442 LSTLEKILVSGDYPKTFQNAKFDRLIFK-YQGITLDGV-VFDPMLASYVLNPDRTHNLTD 499

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L            K+      K   D   +        Q +  +    K   E  
Sbjct: 500 LALRYLGLQLTEYDDIVQKSGKKERQKTIADISIHTVANYCGKQVYATWQLVGKLREELN 559

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+      L D E+ L ++   +  RG  I+   + +L + I  +   L+    K+   
Sbjct: 560 -EIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGE 618

Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSN--ITQLAKDLILNRLA 283
              +      L   LF   G+             T  + L            D I+    
Sbjct: 619 KF-NLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDAIIEYRT 677

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +      ++ L E V+    R+        A+ TGR S      QN+P           
Sbjct: 678 LAKLKSTYVDALPELVNHKTQRIHTNFNQT-ATATGRLSSSNPNLQNIP----------- 725

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                             S  +R   +  +G  +V AD + IE R+LA ++ E   I+A+
Sbjct: 726 -------------IRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAY 772

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           +N +DI+  T    F+   + V+ E+R   K +   + Y  G   F          + + 
Sbjct: 773 SNNQDIHTLTAKLLFDK--EDVTSEERRFAKTINFGVIYGMGVLKF-----SRSTGVDKN 825

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
             N       + +    ++   ++ Q       + ++G                     K
Sbjct: 826 IANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDF------------TNK 873

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            L +                          + K    I L                 L  
Sbjct: 874 TLQQ-------------------------LKGKDLQEIEL------------NKLKNLGP 896

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
             + L+R            +Q  S DI+   M    +        ++L VHDE+V E P 
Sbjct: 897 YDAGLLRSAANAP------IQGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDELVFEVPP 950

Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           + +  +   + S+M         +PL  + +  + + 
Sbjct: 951 SEWDELQLQIKSVMENAMK--LSVPLVVDIHVGENWM 985


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/691 (15%), Positives = 186/691 (26%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  +V AD + IE R++A ++ +   +K F 
Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/691 (15%), Positives = 186/691 (26%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  +V AD + IE R++A ++ +   +K F 
Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/699 (14%), Positives = 192/699 (27%), Gaps = 155/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L DE ++ +  N  F++ + ++   ID+    +  T + +           + 
Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +  G Y   D + 
Sbjct: 461 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L ++L                    L  +   I   G  ID  ++ +  + +     
Sbjct: 506 TLHLHQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    +L      +   T  L+  L+    + +       +  T + +L+   +    
Sbjct: 566 ELETQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   ++   +   T      + TGR S      QN+P   
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSG 720

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFANG DI+  T ++ F T +DKV+ EQR   K +   L Y             
Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L++ +          FE +   + +    + Q  E      L G    L         
Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +G                A++ +  M      +    P           
Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTA--ADIIKKAMIAIDDWLQKDAPQ---------- 874

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                              +   M         +V  +HD ++ 
Sbjct: 875 -----------------------------------VKMIM-QVHDE---LVFEIHDSVI- 894

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   S+  + +LM         +PL+ +      +
Sbjct: 895 ------EESISKIKTLMEGCME--LNVPLQVDIGTGMNW 925


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 190/701 (27%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE    V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDENAHKVGQNLKYDRGILANY-GIELRGITF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P                  L  +   +   G +ID  ++ K  E + Q   
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLN 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEQKAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y            
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 826 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDGWLQTEQPRVR------- 875

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 876 --------------------------MIMQ-------------VHDE---LVFEVH---- 889

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    SV   +  LM         +PL  E    + +
Sbjct: 890 ----KDDLESVSKKIHQLMEN--ETQIDVPLLVEVGSGENW 924


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 186/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           + +   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EREAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 44  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 93

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 94  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 151

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 152 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 196

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 197 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 256

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 257 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 315

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 316 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 370

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 371 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 410

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 411 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 465

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 466 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 516

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 517 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 548

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 549 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 577

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 578 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 614


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 45  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 94

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 95  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 152

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 153 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 197

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 198 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 257

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 258 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 317 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 371

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 372 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 411

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 412 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 466

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 467 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 517

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 518 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 549

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 550 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 578

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 579 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 615


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/721 (15%), Positives = 198/721 (27%), Gaps = 171/721 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSAMPSDLL--- 58
           + +D ET +  P           QA +     AW +    +       Q  +  DLL   
Sbjct: 388 VALDTETTALNPF----------QAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSET 437

Query: 59  -----------------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
                             +L          N+ ++R++  +  G+ +     + T +   
Sbjct: 438 PTPPRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRH-GLPL-GGVVMDTLLADY 495

Query: 102 T--NGLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    L+      L F+         K                    +      + 
Sbjct: 496 LRDANAKHGLEVLAQRNLGFTPTSYGELVPKG------------------ASFAAVPVEA 537

Query: 159 FGEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLV 206
              YC  DV  TR L   L    +             E  L  +   +   G RID   +
Sbjct: 538 AALYCGMDVHVTRRLSPLLRRQLEELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYL 597

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTL 261
            +L E +     +L+ +          +      L   LF   G+D            T 
Sbjct: 598 QELSEELGATLARLEAEARAAAGVEF-NLASPKQLGELLFDTLGLDRKKSRRTKTGWSTD 656

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
            ++L           L+L     S      ++ L   +    GR+         + TGR 
Sbjct: 657 ANVLEKLEDDHPVVPLVLEHRTLSKLKSTYVDALPSLMEPETGRVHTDFNQAV-TATGRL 715

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                             S  +R   +   G  L+ AD
Sbjct: 716 SSSNPNLQNIP------------------------IRTEFSRRIRKAFLPQEGWSLISAD 751

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+L  + GE+  ++A+ NG+D++  T         + V+ ++R +GK +   + 
Sbjct: 752 YSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINFGVI 809

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y  GA+ F          + Q       +   + + +  +     +         + ++G
Sbjct: 810 YGMGAQRF-----ARETGVSQSQAKDFLSRYKQRYPKVFAFLELQERLALSRGYVETILG 864

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                                                           L     K  + I
Sbjct: 865 RRRPFAFD-------------------------------------PSGLGRHLGKDPMEI 887

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
            L  +RR                 +Q +R            +Q  S DI+   M +  + 
Sbjct: 888 DLEVARR-------------GGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQA 928

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE+V E        V  L    M +       +PL  E      +
Sbjct: 929 LSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERAVQ--LTVPLVVETGVGPNW 986

Query: 674 R 674
            
Sbjct: 987 M 987


>gi|162149305|ref|YP_001603766.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/717 (13%), Positives = 178/717 (24%), Gaps = 171/717 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA------------ 52
            ID ET    PL           A +   + A              +             
Sbjct: 346 AIDTETDGLDPLR----------AGLVGISLAVAPGRACYIPLAHTAEPPPPQLLPDLLL 395

Query: 53  --------------------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
                                 + L   L D +V+ +  N+ F+ ++  +          
Sbjct: 396 EPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAG--APQPAP 453

Query: 93  WICTSVLARTNGLPS---SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              T +++           +       L  +        G                   T
Sbjct: 454 VDDTMLISYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTGTGRNR---VPFARVDVARAT 510

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                 A      +       T  +   L    + ER L  +   +   G  ID+  + +
Sbjct: 511 AYAAEDADVTLRLWLSLRP--TLRIHHALALYEELERPLVAVLADMERAGIAIDVVELRR 568

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSI 264
           +    A    +++ +I  L  G   +      L   LF   G+     +   + GT  S+
Sbjct: 569 MSADFATRMAQMEAEIQALA-GRSFNVGSPKQLGEILFDEMGLPGGKRMKSGAWGTDSSV 627

Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           L             IL     +       + L +    D     T      + TGR S  
Sbjct: 628 LQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQMAITSTGRLSSN 687

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A+ G  L+ AD + 
Sbjct: 688 EPNLQNIP------------------------IRTEEGGRIRRAFVAAPGHVLLSADYSQ 723

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA +A      +AFA G+DI+  T ++ F  PI+ +    R   K +        
Sbjct: 724 IELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINF------ 777

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                     +  +     
Sbjct: 778 --------GIIYGIS------------------------------AFGLGRQLGIPPGEA 799

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                A+ A++ G+    + + +                                    P
Sbjct: 800 RAYIDAYFARYPGIRAYMETVKQEAKDQGYVTT--------------------------P 833

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY- 622
             RR     +    +          R+            Q  + DI+   M         
Sbjct: 834 FGRRCWVPGIADRSAVRRAYA---ERQAINAPL------QGGAADIIKRAMVRLPHALAS 884

Query: 623 -----DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++ E       ++  L   +M    S    +PL  E      +
Sbjct: 885 AGLDGRLLLQVHDELLFEVRAGQQDALSALVKQVMESAAS--LSVPLVVETGTGANW 939


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 194/705 (27%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L DET   V  +  ++  +F    GI +       T + +        
Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                         A     EY   
Sbjct: 464 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 508

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  +D + + +    + 
Sbjct: 509 DADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELG 568

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q    L+++   L      +      +    F    + +V  +      T + +L     
Sbjct: 569 QRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 627

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 628 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 686

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 687 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 722

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++G+D  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 723 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 777

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 778 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 833

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +           
Sbjct: 834 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 875

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               +G  +     T    R           ++Q                    +VL   
Sbjct: 876 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 902

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                E P      V   L  LM         +PL AE      +
Sbjct: 903 -----EVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 940


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 194/705 (27%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 358 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 407

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L DET   V  +  ++  +F    GI +       T + +        
Sbjct: 408 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 465

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                         A     EY   
Sbjct: 466 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 510

Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  +D + + +    + 
Sbjct: 511 DADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELG 570

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q    L+++   L      +      +    F    + +V  +      T + +L     
Sbjct: 571 QRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 629

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 630 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 688

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 689 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 724

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++G+D  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 725 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 779

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 780 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 835

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +           
Sbjct: 836 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 877

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               +G  +     T    R           ++Q                    +VL   
Sbjct: 878 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 904

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                E P      V   L  LM         +PL AE      +
Sbjct: 905 -----EVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 942


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 204/700 (29%), Gaps = 155/700 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +  +D ET S               A I   ++A                          
Sbjct: 350 RFAVDTETTSVD----------YRLARIVGVSFALQASEAFYIPIGHDYMGAPEQLDAKF 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
           +   L   L +  +  +  +  ++  +F    GI +    +  T + +           +
Sbjct: 400 VLDTLKPILENPAIGKIGQHMKYDAHVFNNH-GISLAGWAF-DTMLASYVLNPTATRHGM 457

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+++    +   GK                     +    W+L+ EY  + + 
Sbjct: 458 DDLAQYYLDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLY-EYFAQALA 516

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +L K L    + E     +   + + G R+D+  + +L +    +   L+   ++L 
Sbjct: 517 KIPKLEKLL---LEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELA 573

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +      L   LF   GI     +      T ++IL   +        IL   + 
Sbjct: 574 GQPF-NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHP--IIATILEYRSL 630

Query: 285 SGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S       ++L         R+  +      + TGR S      QN+P            
Sbjct: 631 SKLKSTYTDSLIAQSDSETQRVHTSYHQA-ITATGRLSSTDPNLQNIP------------ 677

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G     +R   IA  G+ ++ AD + IE R++A  + ++  +KAF 
Sbjct: 678 ------------IRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFR 725

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +G DI+  T A+     ++ V+ +QR   K +                    G+      
Sbjct: 726 DGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLYGMS----- 766

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A + KL     +     + +++  V    ++
Sbjct: 767 -------------------------AFGLAKQLKLSRAEAQEYITLYFSRYPSVHDYMEN 801

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                A        +                           RRL   +++   + +  A
Sbjct: 802 TRALAAEQGYVETVL--------------------------GRRLYMENIRAGNAMVRQA 835

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDT 639
                R             Q  + DI+   M +      K    ++L VHDE+V E  + 
Sbjct: 836 A---ERAAINAPL------QGSAADIIKLAMISVDQALPKEHAKMLLQVHDELVFEVDED 886

Query: 640 PYFSV-GTLCSLMTKNPSWAKG-----LPLKAEGYEAKRY 673
               V   L  LM   P+  +G     +PL+ E      +
Sbjct: 887 KADEVTALLKKLM---PAVLQGRADIAVPLEIEVGRGVNW 923


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 209/694 (30%), Gaps = 144/694 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---PSDLL 58
            ++ +D ET SP+P+           A +   ++  D++         Q A+     ++L
Sbjct: 343 KQISLDTETDSPEPMR----------ANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVL 392

Query: 59  QYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113
           ++L D  +  + + HN  F+ I+  +  G+++       T + A          SL+   
Sbjct: 393 RHLEDALKGKLLLGHNLKFDLIVLARN-GLELD-NPLFDTMLAAYILDPGTLNYSLETCA 450

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              LN+         GK              P      +   AW ++  Y     +    
Sbjct: 451 LNELNYKMIPISDLIGKGKNQ---STFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFS 507

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +   L      E  L  + Q +   G  ID  ++ ++   I  E K L + I        
Sbjct: 508 VMANLFDTI--ELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFAGYEF 565

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   T  L   LF    +     ++    T  S+L    I      +I+     S    
Sbjct: 566 -NINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLSKLQS 624

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L + ++   GR+  +      + TGR S      QN+P                 
Sbjct: 625 TYVSALPKMINPQTGRIHSSFNQTV-TSTGRLSSSNPNLQNIP----------------- 666

Query: 349 RGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R    A +    ++ AD + IE R+LA ++ ++  I+AF    D
Sbjct: 667 -------VRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLD 719

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+    AK FN  I+KV+ +QR   K +                    G+          
Sbjct: 720 IHKRMAAKIFNVDIEKVTPDQRRAAKTINF--------------GILYGMGQ-------- 757

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                  + + +  +     + +   + A+   +          
Sbjct: 758 ----------------------RKLSRELGISLNEAKDIIDGYYAQFPSIRNFINQCVNK 795

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                 RRL   ++      L +   ++
Sbjct: 796 ARQQHYAETLF--------------------------GRRLYLPNIDSKNQGLKSEAERI 829

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK-----NGYDIVLTVHDEIVSETPDTPYF 642
                         +Q  + D++   M N  K         ++L VHDE++ E       
Sbjct: 830 ---------AVNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELLFEVQQEALE 880

Query: 643 SVGTLCS-LMTK--NPSWAKGLPLKAEGYEAKRY 673
               +    M     P +A+ + LK +    K +
Sbjct: 881 ETKNIVKTCMESALPPKYAEKVHLKTDVGVGKNW 914


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 192/706 (27%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D     VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADVKKAKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L           G     +                      ++  +Y   D + T
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKHQQ---------------TLDQIDIEIVAKYAAEDADIT 474

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             LF     L +            E  L ++   +   G +ID   +++    +    K+
Sbjct: 475 FRLFNHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKE 534

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L+     L      +      LR  LF   G+  V  +      T + +L          
Sbjct: 535 LESKCYNLAGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIA 593

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            LI+     S       + L + +  + R+  +    G + TGR S      QN+P    
Sbjct: 594 ALIMKYRHLSKLKNTYTDKLPKMLDVNSRVHTSYNQTG-TVTGRLSSSDPNLQNIP---- 648

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA NG  +V AD + IE R++A ++ +
Sbjct: 649 --------------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKD 688

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +KAF    DI+  T A+     ID+VS EQR   K +                    
Sbjct: 689 KNLLKAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKAKAIN--------------FGLIY 734

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A + ++     +     +  ++ 
Sbjct: 735 GMS------------------------------AFGLAKQLEIPRAEAQEYIDIYFNRYP 764

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V +      E           +                           RRL   ++  
Sbjct: 765 SVKEYMTTAKEFAKQNGYVETIL--------------------------GRRLYLPEINS 798

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTV 628
                  A     R            +Q  + DI+ + M +          +   +V+ V
Sbjct: 799 KNVMQRNAA---ERAAINAP------MQGTAADIIKKAMIDVNTMILQEYNSEVKMVMQV 849

Query: 629 HDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E   T     V  + S+M         +PL+      + +
Sbjct: 850 HDELVFEVKKTKLEEIVAKIKSIMEAAVK--LSVPLEVNVDAGESW 893


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 48  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 97

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 98  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 156 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 200

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 201 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 260

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 261 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 319

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 320 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 374

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 375 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 414

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 415 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 469

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 470 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 520

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 521 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 552

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 553 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 581

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 582 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/539 (17%), Positives = 163/539 (30%), Gaps = 88/539 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G +ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y            
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              L++ +          FE +     +    + Q  E    + L G    L       
Sbjct: 774 SRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSN 832


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 89/702 (12%), Positives = 187/702 (26%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 358 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E+ + V  N  ++ I+ +   G+++       T +        L   +      
Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQNY-GVEVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 465

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 466 YLHYQTIHIDELIGPKGKNQKNMRDLAPKDVYR---------------YACEDADVTLKL 510

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +      ++ ++++++
Sbjct: 511 KNVLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKE 570

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I  L  G   +      +   LF    I +    ++     T + +L          + I
Sbjct: 571 IYDLA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 629

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 630 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 682

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 683 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 724

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   + +V  + R   K                      G+
Sbjct: 725 MIDAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANF--------------GIIYGI 770

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +     + +   +   + GV
Sbjct: 771 SVFGLAER------------------------------MNVERKEAKELIDGYFETYPGV 800

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                                                           R+    D+    
Sbjct: 801 KAYMDQSIRVAQEKGYVETIFH--------------------------RKRFLPDINSRN 834

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 835 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDE 885

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    P      V  +        ++   +PLKA+    K +
Sbjct: 886 LNFSVPIDEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 926


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/708 (13%), Positives = 189/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +   D ET S   L          QA +   + A +                      + 
Sbjct: 350 QFAFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  GI +       T + +           +
Sbjct: 400 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 458 DSLAKRYLGYDTVKYEDICGKGAKQ---------------IKFAQVSLEDATRYAAEDAD 502

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L               D E  L  + + I   G  +D   + +    +++  
Sbjct: 503 ITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 563 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 621

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL+  + +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 622 LPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 679

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 680 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 716

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 717 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 762

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 763 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 792

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 793 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 826

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M +             ++L
Sbjct: 827 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMIL 877

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M+   S    +PL  +      +
Sbjct: 878 QVHDELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/736 (13%), Positives = 196/736 (26%), Gaps = 189/736 (25%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
               +D ET S              +A I   +++                          
Sbjct: 407  YFAVDTETTSIN----------WREAQIVGLSFSVQAHEAYYLPLAHVDYNEPQKKAKNK 456

Query: 50   ------------------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
                                    +  + + L   L +  +  +  +  ++  +  K  G
Sbjct: 457  KEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAHVLSKY-G 515

Query: 86   IDIP--SKRWI-CTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKG 138
            I++    K W   T + +          S+ +     L+      +   GK         
Sbjct: 516  IELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQTISFEDVAGKGAKQVTFDK 575

Query: 139  SIDSPPYDCTRANHVQAWQLFGEY--CKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
               +   D    +    +QLF  +    +D    + L   L      E  +  +   +  
Sbjct: 576  VAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLHEL------EIPVAQILCQMES 629

Query: 197  RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----ID 252
             G  I    + +L E   +E   L++    +  G   +      L   LF   G      
Sbjct: 630  EGIMIKRSFLNELSERFDEEIVALEKQAY-IEAGEAFNLGSPKQLGEMLFDKLGVIGGKK 688

Query: 253  LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQF 311
                   T +++LS         ++ L   + +       + L     +D  R+  +   
Sbjct: 689  TKSGQYSTGEAVLSKIEHP--LAEIALEYRSLAKLKNTYTDALDAVADNDTDRVHTSYHQ 746

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
               + TGR S      QN+P                                +R   IA 
Sbjct: 747  A-LTSTGRLSSTDPNLQNIP------------------------IRTKTGRLIRQAFIAP 781

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
             G+ L+ AD + IE R++A  +G+D   +AF  G DI+  T A+     +D V+  +R  
Sbjct: 782  KGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRN 841

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
             K +                    G+                                  
Sbjct: 842  AKAINF--------------GLLYGMS------------------------------AFG 857

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
             A + ++  +  +     + A++ GV +  ++                            
Sbjct: 858  LAKQIQMGRSEAQDYINQYFARYPGVQRYMQETRNSAVDNGY------------------ 899

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                    I     R+L   D++     +        R             Q  + D++ 
Sbjct: 900  --------IETILGRKLYTPDIQHSNQMVR---RGAERAAINAPL------QGSAADLIK 942

Query: 612  EGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS-------WAK 659
              M        K    ++L VHDE+V E        +   + + M    S       W  
Sbjct: 943  LAMIAVDNVLPKQNAKMLLQVHDELVFEVDADKVDHIAKLIKNAMQNVLSDTAKQMGWDV 1002

Query: 660  G--LPLKAEGYEAKRY 673
               +PL  E      +
Sbjct: 1003 DFAVPLLVETGVGDNW 1018


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 192/701 (27%), Gaps = 138/701 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50
            + +D ET S  P+           A +        +E   +       Q          
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLS 431

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + S L  ++ D        NS F+R +F    G+D+    +  T +           
Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L      L  F     K   GK       K        + +       +  F       
Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIDEASIYCGYDVFLTFKIVKIFK 543

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++E  + +    + E  L  +   +   G  ID+  + KL + +    + ++  + +
Sbjct: 544 ESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281
           L      +      L   LF    +D            T   +L            ++  
Sbjct: 604 LA-DESFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++   GR+        A+ TGR S      QN+P         
Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +     KL+ AD + IE R+LA +A E+  I 
Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF   +DI+  T    F    +++S ++R +GK +   + Y  G    K  A   G+   
Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                       E + +        +           + G   E                
Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                       L     K    I L ++RR             
Sbjct: 860 --------------------------NGLGRLLGKDPYEIDLQAARRA------------ 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
               +Q +R            +Q  S DI+   M    K          ++L VHDE++ 
Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFTEMNVPAKMLLQVHDELLF 934

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E        +   +   M         +PL  +      + 
Sbjct: 935 EVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDVGIGDNWM 973


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 91/702 (12%), Positives = 189/702 (26%), Gaps = 162/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
           ++  D ET    P           +A +   ++                     + ++  
Sbjct: 388 EISFDTETTGLDP----------NEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNFQ 437

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA-CLA 115
               + ++  V  N  ++ ++ K   G ++       T +           S+       
Sbjct: 438 PLFNNASITWVGQNIKYDLLMLKWY-GFELQG-NIFDTMLAHYVIEPDGKSSMDLLSAKF 495

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +         GK    +                      +   EY   D + T +L  
Sbjct: 496 LGYQPVSITELIGKKGKGQG--------------NMRDIEIEKIKEYAAEDADITLQLKN 541

Query: 176 RLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             +PL   E+           L  +   +   G RID   +     ++ ++  + ++ + 
Sbjct: 542 VFLPLIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVY 601

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILN 280
           +       +      L   LF    +D     ++     T + +L+         + IL+
Sbjct: 602 EQAGVKF-NLASPKQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKLANQHKICNDILS 660

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      ++ L + ++   GR+  +     A  TGR S      QN+P        
Sbjct: 661 FRELTKLKNTYVDALPQLINSKTGRVHTSYAQAVA-VTGRLSSTNPNLQNIP-------- 711

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   I       LV AD + IE R++A I+ +   
Sbjct: 712 ----------------VRTERGREIRKAFIPRDENHVLVSADYSQIELRIVAAISADVNM 755

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            +AF  G+DI+  T AK FN    +V+KE R   K +   +                   
Sbjct: 756 CEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGII------------------ 797

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A    +  T  + +   ++ +   + 
Sbjct: 798 --------------------------YGQGAFGLADNLGISRTEAKAIIDNYKKQFPNIQ 831

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           Q   +              +                           R+    D+     
Sbjct: 832 QYMDNTINFAKETGYVETLM--------------------------GRKRWLKDINSANF 865

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +     +             + +Q  + D++   M               ++L VHDE+
Sbjct: 866 TVRGFAERN---------AINSPIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDEL 916

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V +        V   +   M    +    +P  AE  + + +
Sbjct: 917 VFDVLKEELEKVKPVILDCMQHALALPNDVPTNAEIGDGENW 958


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/708 (13%), Positives = 189/708 (26%), Gaps = 171/708 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +   D ET S   L          QA +   + A +                      + 
Sbjct: 350 QFAFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQ 399

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  V  +  +  ++  + ++  GI +       T + +           +
Sbjct: 400 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDM 457

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 458 DSLAKRYLGYDTVKYEDICGKGAKQ---------------IKFAQVSLEDATRYAAEDAD 502

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L               D E  L  + + I   G  +D   + +    +++  
Sbjct: 503 ITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRM 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 563 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 621

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL+  + +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 622 LPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 679

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 680 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 716

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +                 
Sbjct: 717 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 762

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     + +
Sbjct: 763 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 792

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV    +   +                                       RRL    
Sbjct: 793 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 826

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626
           +               R            +Q  + DI+   M +             ++L
Sbjct: 827 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMIL 877

Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E       + +  + + M+   S    +PL  +      +
Sbjct: 878 QVHDELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 195/703 (27%), Gaps = 159/703 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQS---------- 51
              D ET     L    V            A A  +  V+                    
Sbjct: 352 FSFDTETDGLDTLTVNLVG--------MSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLH 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            + + L   L D  +  +  N  F+R +  +   + +       T + +           
Sbjct: 404 EVLAALKPLLEDANLPKIGQNLKFDRGVLARY-DVALNGI-VFDTMLESYVLNSVSGRHD 461

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L +     +   GK                      +    +   +Y   D 
Sbjct: 462 MDSLADRHLGYKTTTFEEIAGKGKKQL---------------TFNQIPLEEAAKYAAEDA 506

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + T  L + + P  D            E  L  +   I   G  ID   + +    I   
Sbjct: 507 DVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDAQTLAEHSTEITAR 566

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272
             +L++   +L      +      L++ LF    +       + +  T + +L       
Sbjct: 567 LGELEKAAYELAGEEF-NLASPKQLQVILFEKLNLPVLKKTPNGAPSTNEEVLEELADNH 625

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +IL     +       + L + V+    R+  +      + TGR S      QN+P
Sbjct: 626 ELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAV-TATGRLSSRDPNLQNIP 684

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G  ++ AD + IE R++A 
Sbjct: 685 ------------------------VRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAH 720

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   ++AFA G+DI+  T A+ F  P+++V+ EQR   K +   L Y          
Sbjct: 721 LSQDKGLLEAFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMS-----AF 775

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L + +          FE +    ++    + Q  E    + L G    L     R
Sbjct: 776 GLSRQLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSR 835

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              +      K           +G +      A++ +L M      +    P+ R     
Sbjct: 836 NAMRR-----KASEREAINAPMQGTA------ADIIKLAMIAVDNWIVSEQPNVR----- 879

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                        I+Q                    +V  VH  
Sbjct: 880 ----------------------------MIMQ-------------VHDE---LVFEVH-- 893

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++   +    +  LM K+      +PLK +      +
Sbjct: 894 ------ESELATAEQKISELMEKSMQ--LDVPLKVDVGIGINW 928


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/688 (14%), Positives = 195/688 (28%), Gaps = 138/688 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59
             ID ET S              +A +   +  W          T++       P  L  
Sbjct: 365 FSIDTETTSLNTF----------EAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQD 414

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            L +  +     N  ++ ++ K    + +    +  T + +         +L +     L
Sbjct: 415 VLENPDIKKTGQNLKYDILVLKNHH-VRLAPVGF-DTMLASYVINPEEKHNLDDLAKKHL 472

Query: 117 NFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEATREL 173
           N          G  K  I            Y C  A+     +         + E  +  
Sbjct: 473 NHRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQL- 531

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                   + E  L  +   +   G  +D   + +  E + ++  +L E I     G I 
Sbjct: 532 ------CVNIEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYDTA-GTIF 584

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF + G+     ++    T   +L   ++       +L   +       
Sbjct: 585 NIDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYRSLQKLKTT 644

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GR+  +   +  + TGR S      QN+P                  
Sbjct: 645 YIDALPKILNPKTGRVHTSFNQH-ITATGRLSSSNPNLQNIP------------------ 685

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   I S + + L+ AD + IE R+ A I+ +   I AF N EDI
Sbjct: 686 ------IRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDAFRNREDI 739

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F+T  D ++K+ R   K +   + Y       +       L++ Q       
Sbjct: 740 HTATAKTIFDT--DDITKDMRRKAKEVNFGVLYG-----IQPYGLAQRLNISQKEAKAII 792

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +    S       +  E      L G          R   + +    +++    
Sbjct: 793 DTYISKYPGLFSALQTTITEAAEKGYVTTLTGR---------RRYIENLRSRNRNIRMAA 843

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                     +D+      L +   +  
Sbjct: 844 ERAAMNTPIQGTA-----------------------------ADIIKCAMGLVSEAIKKK 874

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
           R ++                     M           L VHDE+V ET +    ++  + 
Sbjct: 875 RMQS--------------------AML----------LQVHDELVFETTEEEKAALAEIA 904

Query: 649 S-LMTKNPSWA--KGLPLKAEGYEAKRY 673
              M K       + +P++ E    K +
Sbjct: 905 EGCMQKAAELCGLETVPVEVEIGTGKNW 932


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 51  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 100

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 101 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 158

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 159 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 203

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 204 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTL 263

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 264 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 322

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 323 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 377

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 378 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 417

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 418 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 472

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 473 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 523

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 524 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 555

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 556 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 584

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 585 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 621


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 193/705 (27%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 372 VCIDTETTSIDPML----------AQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQL 421

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L DE    V  +  ++  +F    GI +       T + +        
Sbjct: 422 SREAVLARMRLWLEDEIRSKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 479

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                         A     EY   
Sbjct: 480 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 524

Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  +D + + +    + 
Sbjct: 525 DADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELG 584

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
                L+++   L      +      +    F    + +V  +      T + +L     
Sbjct: 585 HRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 643

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 644 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 702

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 703 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 738

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++G+D  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 739 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 793

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 794 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 849

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +           
Sbjct: 850 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 891

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               +G  +     T    R           ++Q                    +VL   
Sbjct: 892 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 918

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                E P      V   L  LM    S    +PL AE      +
Sbjct: 919 -----EVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 956


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 197/696 (28%), Gaps = 149/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
             ID+ET S  P              I   + ++  +         +         +   
Sbjct: 320 FAIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L + L D     V  N  F+  +     G++ P   +  T + A          +L +  
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPYFDTMIAAYLLEPNEKKFNLDDLA 427

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L +     +     +    F     D P       +   A   +  Y    ++    
Sbjct: 428 LKFLGYKMTSYQELMSFS-FPLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEA 486

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L      +   E  L  +   +   G  +D + + KL E   ++ ++L E+I ++    
Sbjct: 487 DLENVFYKI---EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543

Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      +   LF   GI             T   +L           LIL       
Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + V+   GR+  +    G + TGR S      QNLP              
Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  I+       +V AD + IE R+LA ++G++  ++AF  
Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEE 697

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ FN   ++V++E R               A      +   G+     S 
Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                        V+  +     E +   +   +  V    + +
Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                    R+     +           
Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
           ++  R            +Q  + DI+   M          K    +++ VHDE+V E P+
Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPN 858

Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               + V  +   MT        +PL+ +    K +
Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/682 (14%), Positives = 197/682 (28%), Gaps = 143/682 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTE-------------QSAMP-----SDLLQYLRDETVM 67
            QA +   A A                          ++ +P     + L   L D +V+
Sbjct: 421 MQAELIGMAIATAPGRAAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVL 480

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----SSLKNACLA-LNFSEHL 122
            +A N  ++ ++  +     +    +  T +++            +       L  +   
Sbjct: 481 KIAQNLKYDLVIMSRY---GVDVAPFDDTMLISYVLDAGTPHGHGMDALAEKWLGHTPLQ 537

Query: 123 TKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIP 179
            K   G  K+ +         +  +    A+  ++ W +              +++RL  
Sbjct: 538 LKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLV--SVYERL-- 593

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               ER L  +   +  RG  +D  ++ +L   +AQ   +L+E+I +L  G   +     
Sbjct: 594 ----ERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLI-GERINIGSPK 648

Query: 240 ALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNT 294
            L   LF   G+     ++     T   +L             I++    +       + 
Sbjct: 649 QLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDA 708

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   +  D +   T     A+ TGR S      QN+P                       
Sbjct: 709 LPGFIHPDTKRVHTSYALAATTTGRLSSSDPNLQNIP----------------------- 745

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R+  I     +LV AD + IE RVLA +A      +AFA+G DI+  T +
Sbjct: 746 -VRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITAS 804

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           + FN P++ +  E R   K +   + Y               L + +          FE 
Sbjct: 805 EMFNVPVEGMPSEVRRRAKAINFGIIYG-----ISAFGLANQLSIPREEAGNYIKKYFER 859

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           +     +    +    E    + + G             +  +      L          
Sbjct: 860 FPGIRDYIEETKAYAREHGFVETIFGRRIH---------YPDIRSSNPSLRAFNERASIN 910

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                           RL  +        +      L R     
Sbjct: 911 A-------------------------------RLQGTAADIIRRAMIRMEEALERA---- 935

Query: 595 GKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK 653
                     +S                 ++L VHDE++ ET +    +   +   +M  
Sbjct: 936 ---------GLSA---------------RMLLQVHDELIFETVEAEVEATIPVVRHVMEN 971

Query: 654 N--PSWAKGLPLKAEGYEAKRY 673
              P+ +  +PL  +   A  +
Sbjct: 972 AAMPAVSMSVPLHVDARAANNW 993


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 189/694 (27%), Gaps = 143/694 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 398 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  YL +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +       +  
Sbjct: 506 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQMD 563

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   E+++++      E  +  +   +   G +ID   + +    +  E  KL++     
Sbjct: 564 EKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAA 617

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
            D    +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 618 ADQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 676

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 677 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 726

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 727 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 771

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F T  + VS EQR   K +   L Y  G            L + 
Sbjct: 772 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 826

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 827 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 877

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                     ++  R+     I                    
Sbjct: 878 NTNARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI-------------------- 917

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                            M         +VL        E  +T 
Sbjct: 918 -----------------------GS-----KLVM-QVHDE---LVL--------EVVETE 937

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 938 LDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 971


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 192/695 (27%), Gaps = 152/695 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDL 57
           +L ID ET S +          A  A +   A++W+            D T    +   L
Sbjct: 354 RLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERL 403

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              LR      V  N  ++ ++  +  G+++P   +  T V         P +L      
Sbjct: 404 APILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQ 460

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +         G     +  +                      G Y   D +   +L 
Sbjct: 461 YLRYQMVAITELIGSGRDQKSMRDVS---------------IDEVGPYACEDTDIALQLA 505

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L              + E  L  +   +   G  ID  ++ ++ + +  E  +L+  I
Sbjct: 506 DVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKI 565

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280
            ++      +      L   LF   G+            T +S+L           LIL+
Sbjct: 566 YEVAGVEF-NIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILD 624

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      ++ L   +    GR+  T      + TGR S      QN+P        
Sbjct: 625 WRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTV-TATGRLSSSNPNLQNIP-------- 675

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +   G KL+ AD   IE R+LA ++G++   
Sbjct: 676 ----------------VRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G+DI+  T A+ F  P ++V+ EQR   K++   + Y               L  
Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYG-----ISAWGLAQRLRC 774

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                          +     +   + ++  +    + L+G          R     +  
Sbjct: 775 STREAQELIEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGR---------RRYVPNINS 825

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +        +         +                         +L    +      
Sbjct: 826 RNRAERSMAERIAVNMPIQGTQADMI---------------------KLAMVHIYHRLQR 864

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                             M           L VHDE+V E P  
Sbjct: 865 EGYRAK----------------------------ML----------LQVHDELVFEMPPE 886

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  L    M +     +G+P++ +      +
Sbjct: 887 EVEPVRQLVEQEMKQALP-REGVPIEVDIGVGDNW 920


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/693 (15%), Positives = 196/693 (28%), Gaps = 130/693 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SAMPSDL 57
           D ET + +P            A +      W  E   +       +         +   L
Sbjct: 337 DTETTALEP----------RDAKLVGIGCCWGSEKTEIAYIPLEHKTGNQLKKETVLEAL 386

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115
              L          N+ F+R++FK   GI++       T + +         +L      
Sbjct: 387 RPILESNKYPKALQNAKFDRLIFK-VQGINLAGV-VFDTMLASYVLNPDDSHNLTELSRK 444

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--EL 173
              S  L K    K L     +   D           +  +  +    K   E     EL
Sbjct: 445 YLDSGILAKSY--KQLSLSKKQTIADLDIPTAAEYCGLDVYATYLIVPKLRKELQDFPEL 502

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            K L    D E+ L  +   +  +G RI++D + +L   + ++ +++++   +       
Sbjct: 503 HKLL---LDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQEAGTEF- 558

Query: 234 SSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      L   LF    +             T   +L          D IL     +   
Sbjct: 559 NLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHPIIDSILEHRTLAKLK 618

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L E V     R+         + TGR S      QN+P                
Sbjct: 619 STYVDALPELVHPQTQRIHTDFNQA-ITTTGRLSSSNPNLQNIP---------------- 661

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +   G  LV AD + IE R+LA ++ E   ++A+    D
Sbjct: 662 --------IRTEFSRQIRQAFLPEPGWLLVSADYSQIELRILAHLSDEPILVEAYKTNRD 713

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           I+  T    F       V+ E+R  GK +   + Y  GA  F        + +       
Sbjct: 714 IHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGALRF-----SREMKVNTNKAKE 768

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 + +E+   +    + Q         L+G                          
Sbjct: 769 FIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGRRRYF--------------------- 807

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                               P L   +      I L             +   +    +Q
Sbjct: 808 ----------------HFESPSLKALKESPLEDIPL------------DELKKIGQNDAQ 839

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642
            +R            +Q  S DI+   M             ++L VHDE+V E P   + 
Sbjct: 840 FLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYRAKLLLQVHDELVFEVPPEEWE 893

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +   M     ++  +PL  + +    + 
Sbjct: 894 ELQPQIKQTMEDA--YSLKVPLLVDIHAGDNWM 924


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/703 (13%), Positives = 191/703 (27%), Gaps = 164/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
            ++ +D ET              A  A +   ++A+           +           L
Sbjct: 358 KEVSMDTETTGLD----------ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVL 407

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              L +E +  +  N  ++ I+ K   GI++  + +  T +           ++      
Sbjct: 408 RPLLENENIRKIGQNLKYDYIILKWY-GIELKGE-FFDTMLAHYLLDPDTRHNMDVLSEN 465

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L ++        GK       +    +   D               Y   D + T +L 
Sbjct: 466 YLGYTPISITELIGKGKNQLNMRDIDVAKVTD---------------YAAEDADVTLQLQ 510

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   P+           + E  L  +   +   G +ID++ +++    +  +  KL+  I
Sbjct: 511 QVFEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTI 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279
                G   +      L   LF    +D     ++     T + +L            IL
Sbjct: 571 Y-HKAGHRFNIASPKQLGEILFDKLQLDPKAKKTKTGQYQTGEDVLLALANKSDIVKDIL 629

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L   ++   GR+  +     A  TGR S      QN+P       
Sbjct: 630 DFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP------- 681

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   I       L+ AD + IE R++A I+ ++ 
Sbjct: 682 -----------------IRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDEN 724

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AF+ G DI+  T AK +                                        
Sbjct: 725 MMDAFSKGLDIHTATAAKVYGV-------------------------------------- 746

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                +     TS      +A +  +         +    +       + + +  +++G+
Sbjct: 747 -----ANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEIIENYFEQYKGI 801

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                D              +                           RR    D+    
Sbjct: 802 KNYMSDTMNFARENGYVETIM--------------------------GRRRYLRDINSAN 835

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631
           +   T      R            +Q  + D++   M N        K    + + VHDE
Sbjct: 836 A---TVRGFAERNAINAP------IQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDE 886

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V +   T    V  +    M         +P+  E  E   +
Sbjct: 887 LVFDVLVTEKDIVKEIIMDRMKNAIK--TTVPIVVEIGEGLNW 927


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/703 (13%), Positives = 184/703 (26%), Gaps = 165/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSD---L 57
             L +D ET S   +           A +   +++ +++          +          
Sbjct: 348 KTLSLDTETTSTDAI----------SAELVGLSFSVEEKEAYYVPIPENREEALKRVAIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E+++ V  N  ++  +     G+ +    +  T +        L  ++      
Sbjct: 398 KPVYENESILKVGQNIKYDYEVLSNY-GVKLKGAMF-DTMIAHYLIQPELRHNMDYMAET 455

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L +     +   G K    +  +    +  Y               EY   D + T  L
Sbjct: 456 LLGYQTIHIEELLGSKGKKQKNMRDLSPTDIY---------------EYAAEDADITLRL 500

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L P              E  L  +   +   G RID + + +  ++  +  ++ +  
Sbjct: 501 KNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYEVK 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITG-IDLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I K       +      +   LF     +D    ++     T + +L            I
Sbjct: 561 IFKEAGEEF-NISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIVRNI 619

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           LN           +  L + ++S  G +  +      + TGR S      QN+P      
Sbjct: 620 LNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------ 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C I   G     AD + IE R++A ++ +D 
Sbjct: 673 ------------------VRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDN 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++AF  G DI+  T AK ++  +D V+  QR   K                      G+
Sbjct: 715 MMEAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQ--------------ANFGIIYGI 760

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                +Q                                ++       + + +      V
Sbjct: 761 TTFGLAQR------------------------------MEIPNNEARALIQDYFRTFPKV 790

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   E                                       RR    ++    
Sbjct: 791 QAYMEHAKELARSKGYAETLFH--------------------------RRRYLPNINSRN 824

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
             +     +               +Q    DI+   M               ++L VHDE
Sbjct: 825 GTIRGFDERN---------AINAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDE 875

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +           V  +    M         +PL A+    K +
Sbjct: 876 LNFSVYPDEREKVEKIVLEEMQNAYP--LNVPLIADAGWGKNW 916


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 185/689 (26%), Gaps = 140/689 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPS 55
            D ET S              +A +   ++   +          +            +  
Sbjct: 324 FDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLD 373

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113
            L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +  
Sbjct: 374 KLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSLS 431

Query: 114 -LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169
              L           G  K               Y    A+   + +  F    ++D   
Sbjct: 432 KEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDKVL 491

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                       + E  L  +   +   G +ID   +++    +    K+L+     L  
Sbjct: 492 -------FKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLAG 544

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASS 285
               +      LR  LF   G+  V  +      T + +L           LI+     S
Sbjct: 545 QEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRHLS 603

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L + + ++GR+  +    G + TGR S      QN+P              
Sbjct: 604 KLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP-------------- 648

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   IA +G  +V AD + IE R++A ++ +   +K F   
Sbjct: 649 ----------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQN 698

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI+  T A+     ID+VS EQR   K +   L Y               L++ +    
Sbjct: 699 LDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAEAQ 753

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                 F  +   + +    ++   +    + ++G    L           +        
Sbjct: 754 EYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVMQR 804

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                          +K     +N   S
Sbjct: 805 NAAERAAINAPMQGTAADI----------------------------IKKAMINVNMMIS 836

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-V 644
           Q                       +   M             VHDE+V E   T     V
Sbjct: 837 QEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEEIV 866

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             + S+M         +PL+      K +
Sbjct: 867 AKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/713 (13%), Positives = 185/713 (25%), Gaps = 163/713 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
              ID ET S           Y  QA +   ++A           T              
Sbjct: 393 HFVIDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLD 442

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWI-CTSVLARTN 103
           +  + + L   L +  +  +  +  ++  +           I      W   T + +   
Sbjct: 443 RDTVLARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVI 502

Query: 104 GL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   + +     L       +   GK                D    +    +QLF
Sbjct: 503 NAAITRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLF 562

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             + K+  + T         L + E     +   +   G  I    + +L +   +E   
Sbjct: 563 DLFSKKLADDT----NNAKLLHELEIPTAEILCQMEANGILIRRPFLNELSKRFDEEIIA 618

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L++   ++      +      L   LF   G+     ++     T +++LS  +      
Sbjct: 619 LEKRAYEVAGEEF-NLGSPKQLGEMLFDKLGVVGGKKTKTGQYSTGEAVLSKIDHP--LV 675

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           D+ L     S       + L         R+  +      + TGR S      QN+P   
Sbjct: 676 DITLEYRGLSKLKSTYTDALDNVADAKTDRVHTSYHQA-LTSTGRLSSTDPNLQNIP--- 731

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G+ ++ AD + IE R++A  +G
Sbjct: 732 ---------------------IRTATGRLIRQAFIAPEGRVILAADYSQIELRLMAHFSG 770

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     AF  G DI+  T A+     + +V+  +R   K +                   
Sbjct: 771 DKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINF--------------GLL 816

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A + ++  +  +     +  ++
Sbjct: 817 YGMS------------------------------AFGLAKQLQMSRSEAQDYIDMYFERY 846

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV     +                                    I     R+L   D+ 
Sbjct: 847 PGVKDYMINTRASAYEHGY--------------------------IETILGRKLYTPDIN 880

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHD 630
                +        R             Q  + D++   M    K        ++L VHD
Sbjct: 881 HSNRMVKQGA---ERAAINAPL------QGSAADLIKLAMIAVDKVLPKEQAKMLLQVHD 931

Query: 631 EIVSETPDTPYFSVGTLC-SLM-----TKNPS--WAKG--LPLKAEGYEAKRY 673
           E+V E        +  L  + M            W     +PL  E    + +
Sbjct: 932 ELVFEVDADKVDEISQLITNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNW 984


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 91/705 (12%), Positives = 185/705 (26%), Gaps = 169/705 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S   +           A +   +++             +            +
Sbjct: 353 VALDTETTSLDEMA----------ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
            + L  +L D        +  +++ +     GI +       T + +       P +L++
Sbjct: 403 LARLRPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGY-VHDTMLQSYVLEVHRPHNLES 460

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                           +    Y   D E  
Sbjct: 461 LAERHLGRSAMRYEDLCGKG---------------AAQIPFARVPIERAAPYACEDAEQC 505

Query: 171 RELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             + + L P    +  L            +   +   G  ID   + +  + + +  + L
Sbjct: 506 LAVHQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALGERIRAL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           + +   L      +      +    +    + ++  +      T + +L           
Sbjct: 566 EAEAHALAGMPF-NLGSPKQIAEVFYDRLKLPVLKKTATGAPSTDEEVLEKLAEDYPLPA 624

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L   +         + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 625 RVLEHRSLVKLKSTYTDKLPTMINPATGRVHTHFAQAVA-VTGRLASAEPNLQNIP---- 679

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R+  IA  G  +  AD + IE R++A ++ +
Sbjct: 680 --------------------IRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQD 719

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF  G D++  T A+ F    + V+ EQR   K                      
Sbjct: 720 PALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKT--------------INFGLIY 765

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A    +  +A +   + +  +  
Sbjct: 766 GMSPY------------------------------GLAKALGIDASAAKSYIERYFERFA 795

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    +                                           RRLV  +++ 
Sbjct: 796 GVRAYMEQTRAQARARGYVETVF--------------------------GRRLVLPEIQS 829

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629
                  A  +               +Q  + D++   M    +          +VL VH
Sbjct: 830 PNGPRRAAAERAA---------INAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVH 880

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P+     V   +  LM    +    +PL A       +
Sbjct: 881 DELVFEVPNEEVDWVRTEVPRLMAAVAT--LRVPLVASVGVGANW 923


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/712 (13%), Positives = 196/712 (27%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            L  D ET S  P+          QA +   + A             +            
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L + L D +++ +A N  ++ ++ ++     I +  +  T +++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L  +    K   G                        +       
Sbjct: 497 AGTGSHGMAPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              ER L  +   + +RG  +D  ++ +L 
Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ     +++I  L             L   LF   G+     ++     T   +L 
Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660

Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                   L + ++  R   +       + L   ++   +   T     ++ TGR S   
Sbjct: 661 DLAAEGHPLLRKIVDWRQ-LTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSD 719

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R+  IA  G KL+ AD + I
Sbjct: 720 PNLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQI 755

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA +A      +AFA+G DI+  T ++ F  P++ +  E R   K +   + Y   
Sbjct: 756 ELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG-- 813

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + +        + FE +   + +    +    E    + + G    
Sbjct: 814 ---ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGR--- 867

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R  +  +      +               A                        
Sbjct: 868 ------RTHYPDIRASNPQVRAFNERAAINAPIQGAAADII------------------- 902

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
             R     ++   +  N                       ++       +          
Sbjct: 903 --RRAMIRMEDALAKEN-----------------------LAA----RMLLQVHDE---- 929

Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                  ++ E P+     ++  +  +M     P+ +  +PL+ +   A  +
Sbjct: 930 -------LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 192/705 (27%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET S  P+          QA +   + + +           +             
Sbjct: 371 VCLDTETTSIDPM----------QAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQL 420

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L D +   V  +  ++  +F    GI +       T + +        
Sbjct: 421 AREAVLARMKPWLEDASRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 478

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                               EY   
Sbjct: 479 HGMDALAERVLHLKTITYEEVCGKGASQIG---------------FDEVPLDRATEYAAE 523

Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + + P               E    ++ Q +   G  ID + + +    + 
Sbjct: 524 DADITLRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLG 583

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q   +L++    L      +      +    F    + ++  +      T + +L     
Sbjct: 584 QRLLELEQQAYALAGQPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAE 642

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 643 DYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 701

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 702 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 737

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ ++  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 738 AHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 792

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 793 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWL---- 848

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +     +     
Sbjct: 849 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWLDGSPSTG---- 897

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                +      T  ++Q                    +VL   
Sbjct: 898 ---------------------KPGAPMRTRQVMQ-------------VHDE---LVL--- 917

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                E P      V   L  LM      A  +PL AE      +
Sbjct: 918 -----EVPQEELSLVRERLPELMCGVA--ALRVPLVAEVGVGANW 955


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVL 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D +   +  +  ++  +     GI +       T + +          + + 
Sbjct: 402 AKLTPWLEDASRKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 460 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLDKASEYAAEDADITL 504

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P             D E  + L+ + +   G  ID D + +    IA    +L
Sbjct: 505 QLHRALYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVEL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 565 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ + GR+        A  TGR +      QN+P    
Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G K+V AD + IE R++A I+ +
Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWL---------P 824

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD     V   L  +M         +PL AE    + +
Sbjct: 886 VPDGELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 193/705 (27%), Gaps = 155/705 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + ID ET S  P+           A +   + +             +             
Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQL 405

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A+ + +  +L DET   V  +  ++  +F    GI +       T + +        
Sbjct: 406 SREAVLARMKLWLEDETRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 463

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +       L+      +   GK                         A     EY   
Sbjct: 464 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 508

Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + L P               E    ++ Q +   G  +D + + +    + 
Sbjct: 509 DADITLRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELG 568

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270
           Q   +L++    L      +      +    F    + +V  +      T + +L     
Sbjct: 569 QRLLELEQQAFALAGQPF-NLNSPKQIGELFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 627

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 L+L+    +       + L + V+   GR+  T     A  TGR +      QN
Sbjct: 628 DYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 686

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   +A  G  +V AD + IE R++
Sbjct: 687 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 722

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ ++  ++AF  G+D++  T A+ F     +V+ EQR   KV+   L Y        
Sbjct: 723 AHLSEDEGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 777

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + + +  +     F  +     +    +    E    + + G    L    
Sbjct: 778 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWL---- 833

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +        +                 A++ +L M   +  +           
Sbjct: 834 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 875

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               +G  +          R           ++Q                    +VL   
Sbjct: 876 ----EGSPNAGKPGVPMRTRL----------VMQ-------------VHDE---LVL--- 902

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                E P      V   L  LM    S    +PL AE      +
Sbjct: 903 -----EVPQDELARVRERLPELMCDVAS--LRVPLVAEVGVGSNW 940


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/705 (16%), Positives = 205/705 (29%), Gaps = 143/705 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSA--------- 52
           + ID ET S  P           Q+ +      W + P  +        +          
Sbjct: 387 VAIDTETTSLNPF----------QSELVGIGLCWGERPEQIAYIPLGHITEDLFEDQSSN 436

Query: 53  -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                  +   L  +L       V  N+ ++R++F +  GI +     + T +      +
Sbjct: 437 LQLPLIDVIKGLSPWLGSSEHPKVLQNAKYDRLIFLQY-GIPLEGV-IMDTLLADYLCDV 494

Query: 106 PS--SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               SL+        F+        GK       +   +      +    +  +     Y
Sbjct: 495 THRHSLEAMAKREFGFTPTNFNEIVGKD------ETFKNVSISTASLYCGMDVYLTRKLY 548

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             +         K +  L   E+ L  +   +  RG RID+  + +L   + +  K +++
Sbjct: 549 FLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKELSIELNKALKNIEK 608

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDL 277
              K+      +      L   LF   G+D            T  ++L           L
Sbjct: 609 SAYKIAKTDF-NLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTDANVLERLQGDNPIVPL 667

Query: 278 ILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++     S      +  L + V +  GR+         + TGR S      QN+P     
Sbjct: 668 VIEHRTLSKLLSTYVEALPQLVEAQTGRVHTDFNQAV-TATGRLSSSNPNLQNIP----- 721

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                   S  +R   +   G +L+ AD + IE R+LA ++GE 
Sbjct: 722 -------------------IRTEFSRRIRKAFLPREGWQLLSADYSQIELRILAHLSGEA 762

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              +A+ NG+D++  T         + ++  +R +GK +   + Y  G + F        
Sbjct: 763 SLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVIYGMGVQRF-----ARS 815

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
             + Q           E +    S+    +         + ++G                
Sbjct: 816 TGVSQSEAKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHFHFDK------- 868

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                                           L     K  + I L  +RR         
Sbjct: 869 ------------------------------NGLGRLLGKNPLEIDLKLARRA-------- 890

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                   +Q +R            +Q  S DI+   M    K         +++L VHD
Sbjct: 891 -----GMEAQQLRAAANAP------IQGSSADIIKVAMVKLDKELKNEGLPANLLLQVHD 939

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E+V E   T    V  L    M K       +PL  E    K + 
Sbjct: 940 ELVLEVDPTATEQVKALVIHTMEKAV--LLNVPLVVEASVGKNWM 982


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 197/708 (27%), Gaps = 159/708 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           +L +D ET S  P            A +   + + +           ++           
Sbjct: 383 RLAVDTETDSLTPAT----------ATLVGVSLSTEPGIACYIPLAHKAEGSAAAGQLDF 432

Query: 53  -------------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                          + L   L D +V+ + HN  F+  LF +  GI +       + ++
Sbjct: 433 DAPPPPAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQLFGRN-GITVSP--VDDSMLI 489

Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-H 152
           +           +       L ++    K     GK  I         +  Y    A+  
Sbjct: 490 SYVLEGGSHGHGMDELAELHLAYTPIPFKEVCGTGKNQITFDRVPLDKALAYAAEDADIT 549

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           ++ W L           T  +++ L      +R L  +   +   G RID   + +L + 
Sbjct: 550 LRLWTLLKPRLVDSRMVT--VYETL------DRPLVPVVANMEREGVRIDQQALARLSQD 601

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS 268
           ++    ++++++  L  G   +      L   LF    +      +     T  S+L   
Sbjct: 602 LSVRLAEIEKEVHALA-GQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEEL 660

Query: 269 NIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                     +L+    +       + L E +S   GR+        A+ TGR S     
Sbjct: 661 AEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALA-ATNTGRLSSTDPN 719

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +AS G KL+  D + IE 
Sbjct: 720 LQNIP------------------------VRTEEGRKIRRAFVASPGHKLLSVDYSQIEL 755

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R++A +A       AF +G DI+  T A+ F  P+ +++ + R   K +   + Y     
Sbjct: 756 RLVAEMADIQALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYG---- 811

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L +     N    +  E + + +      +    +      L G  C + 
Sbjct: 812 -ISGFGLGRQLGIAPGEANAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYM- 869

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                    G+                                                 
Sbjct: 870 --------PGIQDKNAARRAFAERQAINAPIQGTAADI---------------------M 900

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
           +   + +    +   +                                         ++L
Sbjct: 901 KRAMNRMPDALAAAGSNAR--------------------------------------MLL 922

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P+        +   +M        G+PL AE      +
Sbjct: 923 QVHDELLFEVPEAEVDDAARIVREVMEGAAH--LGVPLVAEAGIGDNW 968


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 191/701 (27%), Gaps = 138/701 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50
            + +D ET S  P+           A +        +E   +       Q          
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
              + S L  ++ D        NS F+R +F    G+ +    +  T +           
Sbjct: 432 IEYVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLILKGVTF-DTLLADYLLNNQEKH 489

Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L      L  F     K   GK       K        + +       +  F       
Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIDEASIYCGYDVFLTFKIVKIFK 543

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              ++E  + +    + E  L  +   +   G  ID+  + KL + +    + ++  + +
Sbjct: 544 ERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281
           L      +      L   LF    +D            T   +L            ++  
Sbjct: 604 LA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   ++   GR+        A+ TGR S      QN+P         
Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                               S  +R   +     KL+ AD + IE R+LA +A E+  I 
Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNCKLLSADYSQIELRILAHLADEEILIN 757

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF   +DI+  T    F    +++S ++R +GK +   + Y  G    K  A   G+   
Sbjct: 758 AFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                       E + +        +           + G   E                
Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                       L     K    I L S+RR             
Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
               +Q +R            +Q  S DI+   M    K          ++L VHDE++ 
Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLF 934

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E        +   +   M         +PL  +      + 
Sbjct: 935 EVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 201/705 (28%), Gaps = 179/705 (25%)

Query: 25   AEQAVITLCAYAWDDE---------PVKLWDRTE-------------QSAMPSD-----L 57
            A +A +   + A  D                                 + +P+      L
Sbjct: 419  AMRADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRL 478

Query: 58   LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL 114
             + L D +++ VA N  +  ++ K+  G+ +    +  T +++           +++   
Sbjct: 479  KELLEDPSILKVAQNLKYGYLVMKRH-GVTMQG--FDDTMLISYVLDAGNGAHGMESLAE 535

Query: 115  A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              L  +   +K   G                   +             Y   D +    L
Sbjct: 536  RWLGHTPIASKGITGSG---------------RSSLTIDFVDIDKAAAYSAEDADIALRL 580

Query: 174  FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +  L P              ER L  +   + +RG  +D  ++ +L   +AQ    L+++
Sbjct: 581  WHVLKPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDE 640

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDL 277
            I +L             L   LF   G+     ++     T   +L         L + +
Sbjct: 641  IYRLAGETFT-IGSPKQLGDILFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKI 699

Query: 278  ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
            +  R   +       + L   V  + +   T     A+ TGR S      QN+P      
Sbjct: 700  VDWRQ-LTKLKSTYTDALPGFVHPETKRVHTCFALAATTTGRLSSSDPNLQNIP------ 752

Query: 338  EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                      +R+  +A+ G KLV AD + IE RVLA +A    
Sbjct: 753  ------------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQ 794

Query: 398  KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
              +AFA+G DI+  T ++ F  P+D +  E R   K +                    G+
Sbjct: 795  LRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINF--------------GIIYGI 840

Query: 458  DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                 +  +                                  +      K +  +  G+
Sbjct: 841  SAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPGI 870

Query: 518  LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                ++                                          RR  Y D++   
Sbjct: 871  RDYMENTKTFARENGYVETIF--------------------------GRRAHYPDIRSSN 904

Query: 578  SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631
              +        R            +Q  + DI+   M          K    ++L VHDE
Sbjct: 905  PSMRAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDE 955

Query: 632  IVSETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
            ++ E  +     ++  + S+M      A    +PLK +   A  +
Sbjct: 956  LIFEVEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/705 (16%), Positives = 205/705 (29%), Gaps = 170/705 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S   +          QA +   + A             +            +
Sbjct: 332 VAVDTETTSLDEM----------QARMVGMSLAVSPGVACYIPVAHRGPDNAPQLPKAEV 381

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
            + L  +L D T   + H++ ++  +F    GI +       T + A          L +
Sbjct: 382 LARLKPWLEDATRAKLLHHAKYDAHVFAN-EGIKLAGIT-EDTMLQAYVLESHRGVGLND 439

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A    G Y   D + T
Sbjct: 440 LAQRYLGRSGVSYEDLCGKGAKQIG---------------FDEVAVDKAGHYAAEDSDFT 484

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L + L P+             E  +  +  T+   G ++D   + +    + QE  +L
Sbjct: 485 LQLHQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQL 544

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF    + +V  +      T + +LS          
Sbjct: 545 EQKAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKLAQDYPLPQ 603

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   ++ + GR+        A  TGR +      QN+P    
Sbjct: 604 VLLEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 658

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   IA  G  L+ AD + IE R++A ++ +
Sbjct: 659 --------------------VRTEAGRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDD 697

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AF  GEDI+  T ++ F   ++ VS EQR   K +   L                
Sbjct: 698 ANLQRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINFGLI--------------Y 743

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+ +   + N+                               +   A +     + A++ 
Sbjct: 744 GMGVFGLASNL------------------------------GITRDAAQAYIDRYFARYP 773

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV     D                                          RRL   +++G
Sbjct: 774 GVAMYMDDTRRRAREQGYVETVF--------------------------GRRLQLPEIRG 807

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629
                        R            +Q  + D++   M          K    +++ VH
Sbjct: 808 ASGPRRQGA---ERAAINAP------MQGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVH 858

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E PD     V   L  LM    +    +PL AE    K +
Sbjct: 859 DELVLEAPDAELELVKEALPRLMCNVAT--LRVPLVAEVGMGKNW 901


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 198/705 (28%), Gaps = 158/705 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
           + +D ET     +             +   +               +             
Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCITPGKACYIPLAHRAAATDDLFGSDEL 399

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L D  VM +  N  ++  +F +  GI I       T +++   
Sbjct: 400 AEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITP--IDDTMLMSYAM 456

Query: 104 G---LPSSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +       L+ +    K   G  K+ I        D+  Y    A+  ++ W
Sbjct: 457 HGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDAVKYAAEDADITLRLW 516

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +F     +D      +++ L      ER L  +   +   G ++D D + ++    +Q+
Sbjct: 517 TIFKPQLHQDRVT--RVYEGL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFSQK 568

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
             +L+ +I +L  G   +      L   LF   G++     +     T   +L       
Sbjct: 569 MAQLEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDLATEH 627

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +L+    S       + L E ++   GR+  +    GA+ TGR +      QN+P
Sbjct: 628 ELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGAN-TGRLASTDPNLQNIP 686

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  GK +V  D + IE R+LA 
Sbjct: 687 ------------------------VRSEEGRRIREAFVAPEGKTIVSLDYSQIELRILAH 722

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +AG D   +AF  G+DI+  T ++ FN P+++++ E R   K +   + Y          
Sbjct: 723 MAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVIYG-----ISGF 777

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L + +          FE +   +++         E    + L G           
Sbjct: 778 GLARNLRIPRGEAQAFIDRYFERFPGIKTYMDETVAFAKEHKRVETLFGRIIHT------ 831

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +              +      +A  +                       R    
Sbjct: 832 ---PEISASGPRAGFAKRAAINAPIQGTAADII----------------------RRAMV 866

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
            + G                                +I  + +               DE
Sbjct: 867 RMPGAI-----------------------------AEIPAKMLLQVH-----------DE 886

Query: 632 IVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           ++ E        +     S+M     P     +PL  +    K +
Sbjct: 887 LIFEVEQGAEDDLIAAARSVMEGAAEPVVKLDVPLVVDAGRGKSW 931


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 189/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D +   +  +  ++  +     GI +       T + +          + + 
Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                           +   EY   D + T 
Sbjct: 460 ALRHLGVRTIKYEDVAGKGAQQIG---------------FDEVPLEQASEYAAEDADITL 504

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA    +L
Sbjct: 505 QLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIEL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           ++    L  G   +      +    F    +         +  T + +L           
Sbjct: 565 EQQAYGLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ + GR+        A  TGR +      QN+P    
Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G K+V AD + IE R++A I+ +
Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFANGEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 719 ESLLRAFANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWL---------P 824

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 886 VPEGELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/732 (14%), Positives = 192/732 (26%), Gaps = 182/732 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ----------- 50
           + +D ET S  P           QA +      W +            Q           
Sbjct: 384 IALDTETTSLNPF----------QAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLL 433

Query: 51  --------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
                                 + + L  +L          N+ ++R++  +  G+ +  
Sbjct: 434 TPASAEPPADSAVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILLRH-GLSLEG 492

Query: 91  KRWICTSVLART--NGLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
              + T +            L+        F+         K                  
Sbjct: 493 V-VMDTLLADYLRDANAKHGLEVLAERNFGFTPTSFSELVAKG----------------- 534

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTIN 195
                         YC  DV  T  L   L                  E  L  +   + 
Sbjct: 535 -ETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEALPKLLDQVELPLEPVLARME 593

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV- 254
             G RID   +  L E +A     L+    +       +      L   LF   G++   
Sbjct: 594 ATGIRIDKPYLATLSEELAGTLASLEAGAREAAGVEF-NLASPKQLGELLFETLGLERKK 652

Query: 255 ----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                    T  ++L           L+L     S      ++ L   V    GR+    
Sbjct: 653 SRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHRTLSKLKSTYVDALPALVEPETGRVHTDF 712

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                             S  +R   +
Sbjct: 713 NQAV-TATGRLSSSNPNLQNIP------------------------IRTEFSRRIRKAFL 747

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
              G +L+ AD + IE R+L  ++GE+  ++A+ANG+D++  T         D+V+ ++R
Sbjct: 748 PQEGWQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADER 805

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
            +GK +   + Y  GA+ F          + Q       +   + + +  +     +   
Sbjct: 806 RLGKTINFGVIYGMGAQRF-----ARETGVSQSQAKEFLSKYKQRYPKVFAFLELQERLA 860

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                 + ++G                                                L
Sbjct: 861 LSRGYVETILGRRRPFAFD-------------------------------------PGGL 883

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
              R K    I L  +RR                 +Q +R            +Q  S DI
Sbjct: 884 GRLRGKPPEEIELEVARRA-------------GMEAQQLRAAANAP------IQGSSADI 924

Query: 610 LCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE+V E         +  +  +M         +P
Sbjct: 925 IKLAMVQLDQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENAVRLL--VP 982

Query: 663 LKAEGYEAKRYR 674
           L  +      + 
Sbjct: 983 LLVDTGVGPNWM 994


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/691 (15%), Positives = 191/691 (27%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L +   D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +L+       + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-YKLY------CELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA NG  +V AD + IE R++A ++ +   +KAF 
Sbjct: 649 ------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 190/700 (27%), Gaps = 157/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L DE ++ +  N  F++ + ++   ID+    +  T + +           + 
Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +  A +  G Y   D + 
Sbjct: 461 SLAERYLSHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L ++L                    L  +   I   G  ID  ++ +  + +     
Sbjct: 506 TLHLHQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTIRLA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
           +L+    +L      +   T  L+  L+    + +       +  T + +L+   +    
Sbjct: 566 ELETQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   ++   +   T      + TGR S      QN+P   
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  +V AD + IE R++A ++G
Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSG 720

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFANG DI+  T ++ F   +DKV+ EQR   K +   L Y             
Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L++ +          FE +   + +    + Q  E      L G    L         
Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +G                A++ +  M      +    P           
Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTA--ADIIKKAMIAIDDWLQKDTP----------- 873

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATKNGYDIVLTVHDEIV 633
                                                  M          +V  +HD ++
Sbjct: 874 ------------------------------------KVKMIMQVHDE---LVFEIHDSVI 894

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    S+  + +LM         +PL+ +      +
Sbjct: 895 -------EESISKIKALMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 103/721 (14%), Positives = 192/721 (26%), Gaps = 185/721 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------------- 49
             D ET              A +  +   + A                            
Sbjct: 380 AFDTETSELS----------AYKGHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAE 429

Query: 50  --QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                +P D     L   L D++++ +  N  ++ ++  +     I       T +++  
Sbjct: 430 ALGGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH---GIAMTPIDDTMLISYA 486

Query: 103 NGLP-----SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                      +       L       K   G                    +       
Sbjct: 487 LDASSGLAGHGMDELSERFLGHKPISYKELCGSG---------------RSAKPIAAVEI 531

Query: 157 QLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLV 206
               EY   D + T  +++ L P              ER L  +   +  RG  +D  ++
Sbjct: 532 DRVTEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQIL 591

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLK 262
            +L    AQ++  L+++I K+      +      L   LF   G+     ++     T  
Sbjct: 592 SRLSGNFAQKQAALEDEIAKMAGEEF-NPGSPKQLGEILFGKLGLPGGKKTKSGQWSTDA 650

Query: 263 SILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +L             +++    +       +TL   +  +GR+  +     ++ TGR S
Sbjct: 651 RVLEDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRIHTSFSMA-STTTGRLS 709

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R+  +A  GKKL+ AD 
Sbjct: 710 SSEPNLQNIP------------------------VRTEEGRAIRTAFVAPKGKKLLSADY 745

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA IA       AF NG DI+  T ++ FN P++ +    R   K +      
Sbjct: 746 SQIELRILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINF---- 801

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     +  +                               +   
Sbjct: 802 ----------GIIYGISAFGLANQLA------------------------------IPRE 821

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+                                          + 
Sbjct: 822 EAGQYIKRYFERFPGIRDYMDKTKAFAKKHGY--------------------------VE 855

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
               RR  Y D+      + +      R            +Q  + DI+   M       
Sbjct: 856 TLFGRRAHYPDITAKNPQIRSF---NERAAINAP------IQGTAADIIRRAMVRMEGAL 906

Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKR 672
                   ++L VHDE+V E  +        +  ++M     P     +PL+ E   A  
Sbjct: 907 ADANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNIMEAAASPRVILSVPLEVEAKAALN 966

Query: 673 Y 673
           +
Sbjct: 967 W 967


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 182/702 (25%), Gaps = 164/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
               D ET    P+           A +   ++A  +             E   + +   
Sbjct: 368 FFAFDTETDGIDPMK----------AGLVGMSFAVKENEAWYVPVPAAREEADKVLAHFS 417

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++     +  N  F+ ++ +K  GI I       T +            +       
Sbjct: 418 PALQNPKSFKIGQNIKFDILVVRKY-GIRIAG-PLFDTMIAHYLLNPELRHGMDYLAETY 475

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +     +   G     + C                        EY   D + T +L  
Sbjct: 476 LKYKTVRIEELIGPKGRKQLC--------------MRDVPIPQVAEYAAEDADITLKLKN 521

Query: 176 RLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
              P  D E            L  +   +   G  +D   + +  E +    KKL+++I 
Sbjct: 522 YFAPCLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIY 581

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILN 280
           +L      +      +   LF    I+         S  T + IL          + +L 
Sbjct: 582 ELAGIKF-NINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLE 640

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L E ++   G++  +      + TGR S      QN+P        
Sbjct: 641 YRGLKKLLSTYIDALPELINPETGKIHTSYNQAV-TSTGRLSSTNPNLQNIP-------- 691

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R    A         AD + IE R++A ++ +   
Sbjct: 692 ----------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHM 735

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G DI+  T AK +  P+++V+ + R   K                      G+ 
Sbjct: 736 IEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGIS 781

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +   ++                                 +     + + + +   +  + 
Sbjct: 782 VFGLAER------------------------------LNIPRAESKELIEGYFKTYPDIR 811

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +  E                                       R+    D+    +
Sbjct: 812 AYMDESIEVAKEKGYVETIYK--------------------------RKRFLPDINSHNA 845

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +        R            +Q  + DI+   M               ++L VHDE+
Sbjct: 846 IVRGYA---ERNAINAP------IQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDEL 896

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M         +PL A+  E   +
Sbjct: 897 NFNVYKDEMEKVKQIVLDEMENAIQ--LQVPLIADCGEGVNW 936


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 187/701 (26%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIT----------ANLVGLSFAVEPGVAAYVPVAHDYLDAPDQIARDRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVSKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   +   G  ID  ++ K  E I     
Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++    +  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEQKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   I      +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y            
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 826 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDGWLESEQPRVR------- 875

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 876 --------------------------MIMQ-------------VHDE---LVFEVH---- 889

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                     V   +  LM         +PL  E    + +
Sbjct: 890 ----KDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 108/695 (15%), Positives = 198/695 (28%), Gaps = 169/695 (24%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS------------------AMPSDLLQYLRDETVM 67
            QA +   A A             +S                     + L   L D++V+
Sbjct: 421 MQAELIGMAMATAPGRAAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVL 480

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----SSLKNAC-LALNFSEHL 122
            +A N  ++ ++  +  GID+    +  T +++            +       L  +   
Sbjct: 481 KIAQNLKYDLVIMSRY-GIDVAP--FDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQ 537

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181
            K   G    +                            +   D + T  L+  L P   
Sbjct: 538 LKDVIGSGKNSVG---------------FDQVDIDKATAHAAEDADVTLRLWLVLKPRLA 582

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      ER L  +   +  RG  +D  ++ +L   +AQ   +L+E+I +L  G  
Sbjct: 583 ATGLVSVYERLERPLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLV-GER 641

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGS 287
            +      L   LF   G+     ++     T   +L             I++    +  
Sbjct: 642 INIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKL 701

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                + L   +  + +   T     A+ TGR S      QN+P                
Sbjct: 702 KSTYTDALPGFIHPETKRVHTSYALAATTTGRLSSSDPNLQNIP---------------- 745

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R+  IA  G +LV AD + IE RVLA +A      +AFA+G D
Sbjct: 746 --------VRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGAD 797

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T ++ FN P++ +  E R   K +                    G+          
Sbjct: 798 IHAITASEMFNVPVEGMPSEVRRRAKAINF--------------GIIYGIS--------- 834

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    A +  +         K +  +  G+    ++    
Sbjct: 835 ---------------------AFGLANQLSIPREEASNYIKKYFERFPGIRDYIEETKAY 873

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                           +     RR+ Y D++     +       
Sbjct: 874 AREHG--------------------------FVETIFGRRIHYPDIRSSNPSIRAF---N 904

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641
            R             Q  + DI+   M    +          ++L VHDE++ ET D   
Sbjct: 905 ERASINARL------QGTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEV 958

Query: 642 FSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            +   +   +M     P+ +  +PL  +   A  +
Sbjct: 959 EATIPIVRHVMENAAMPAVSMSVPLHVDARAANNW 993


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/691 (15%), Positives = 191/691 (27%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L +   D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +L+       + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-YKLY------CELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA NG  +V AD + IE R++A ++ +   +KAF 
Sbjct: 649 ------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D +   +  +  ++  +     GI +       T + +          + + 
Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                           +   EY   D + T 
Sbjct: 460 ALRHLGVRTIKYEDVAGKGAQQIG---------------FDEVPLEQASEYAAEDADITL 504

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA    +L
Sbjct: 505 QLHHALYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIEL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           ++    L  G   +      +    F    +         +  T + +L           
Sbjct: 565 EQQAYGLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ + GR+        A  TGR +      QN+P    
Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G K+V AD + IE R++A I+ +
Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWL---------P 824

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P++    V   L  +M         +PL AE    + +
Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 100/716 (13%), Positives = 190/716 (26%), Gaps = 172/716 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM--------- 53
            + +D ET    P+           A +   + + +                        
Sbjct: 395 TVAVDTETDGLTPV----------SAGLVGISLSVEPGRACYIPVQHIDPATPKGATGGL 444

Query: 54  -----------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                             + L   L D  V+ V  N  F+  +F +  GI +       T
Sbjct: 445 DLGGTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARH-GIAMAP--IDDT 501

Query: 97  SVLARTNG---LPSSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRA 150
            +++   G       +       L  +        G  K+ I         +  Y    A
Sbjct: 502 MLISYVLGTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRVPLDKARDYAAEDA 561

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +          +     +  R+    L      ER L  +   +  RG  +D  ++ ++ 
Sbjct: 562 D-----ITLRLHRVLKHDLVRQHMVTLYETV--ERPLVPVVARMESRGVLVDRAVLRQMS 614

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266
              AQ   +++ +I KL      +      L   LF    +      +     T   +L 
Sbjct: 615 SDFAQRMLEMEAEIQKLAPRAF-NVGSPKQLGEILFDEMKLPGGSKGKSGAWGTDSGVLE 673

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324
                       +L+    +       + L+E +    GR+  +     A+ TGR S   
Sbjct: 674 GLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALA-ATATGRLSSTD 732

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +A  G  L+  D + I
Sbjct: 733 PNLQNIP------------------------IRTEEGRKIRRAFVARPGHLLLSVDYSQI 768

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A +AG     +AF +G DI+  T ++ F  P+D+++ E R   K +         
Sbjct: 769 ELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAIN-------- 820

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+                                     +  +      
Sbjct: 821 ------FGIIYGISGF------------------------------GLGRQLGITPGEAG 844

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
              + +  +   +    +               +                          
Sbjct: 845 AFIRQYFERFPELQTYMETTKAFAREHGYVTTLL-------------------------- 878

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RR     ++              R+           +Q  + DI+   M          
Sbjct: 879 GRRCWIQGIREKAPARRAYA---ERQAINAP------IQGTAADIIKRAMARIEPALAAA 929

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L VHDE++ E P+        +   +M        G+PL AE   A  +
Sbjct: 930 KLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA--GLGVPLVAEAGWAPNW 983


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/720 (14%), Positives = 194/720 (26%), Gaps = 176/720 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-----DDEP----VKLWDRTEQS--- 51
           +  D ET S            A QA +   + A      D                +   
Sbjct: 383 VAFDTETTSLD----------AMQAELVGFSLAVPEAAPDTGELKVRACYAPLAHSNGVG 432

Query: 52  ----------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
                           A   +L   L +  V+ +  N  ++ ++  +    +I  K +  
Sbjct: 433 DLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFDD 489

Query: 96  TSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           T +L+           +       L       K   G                       
Sbjct: 490 TMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGSG---------------KSAIPF 534

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRI 201
              A      Y   D E T  L+  L                ER L  +   +  RG R+
Sbjct: 535 AQVAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRV 594

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D  ++ +L   +AQ    L+ +I +L  G   +      L   LF    +     ++   
Sbjct: 595 DRQILSRLSGELAQGAAALEAEIQELA-GENFNVGSPKQLGEILFDKMSLPGGSKTKTGQ 653

Query: 259 -GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
             T    L             I++    +       + L   ++ + +   T     A+ 
Sbjct: 654 WSTSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAMAATT 713

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                +R+  +A  G  L
Sbjct: 714 TGRLSSSDPNIQNIP------------------------VRTAEGRKIRTAFVAEPGNVL 749

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE RVLA +A      +AFA+G DI+  T ++ F  PI+ +  E R   K + 
Sbjct: 750 ISADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAIN 809

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L +++          FE +   + +    + +  E     
Sbjct: 810 FGIIYG-----ISAFGLANQLSIERSEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVT 864

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            + G      +   R+ +  V                +G +    R              
Sbjct: 865 TIFGRRAHYPEI--RSSNPQVRAFN---ERAAINAPIQGSAADIIR-------------- 905

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    R +V  +   + + +                      QA         +  
Sbjct: 906 ---------RAMVRMEPALEAAGM----------------------QA-------RMLLQ 927

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
                          ++ ET +      +  +  +M      A    +PL+ +   AK +
Sbjct: 928 VHDE-----------LIFETAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDARAAKNW 976


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 107/691 (15%), Positives = 190/691 (27%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELEFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNYFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +L+       + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-YKLY------CELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                +       LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEFK-LSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA NG  +V AD + IE R++A ++ +   +KAF 
Sbjct: 649 ------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 399 AKLTPWLGDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                               EY   D + T 
Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++A I+ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/696 (15%), Positives = 196/696 (28%), Gaps = 149/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
             ID+ET S  P              I   + ++  +         +         +   
Sbjct: 320 FAIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L + L D     V  N  F+  +     G++ P      T + A          +L +  
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPHFDTMIAAYLLEPNEKKFNLDDLA 427

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L +     +     +    F     D P       +   A   +  Y    ++    
Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFADVPVEKAANYSCEDADITYRLYKILSLKLHEA 486

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L      +   E  L  +   +   G  +D + + KL E   ++ ++L E+I ++    
Sbjct: 487 DLENVFYKI---EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543

Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      +   LF   GI             T   +L           LIL       
Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + V+   GR+  +    G + TGR S      QNLP              
Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  I+       +V AD + IE R+LA ++G++  +KAF  
Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEE 697

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ FN   ++V++E R               A      +   G+     S 
Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                        V+  +     E +   +   +  V    + +
Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                    R+     +           
Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
           ++  R            +Q  + DI+   M          K    +++ VHDE+V E PD
Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPD 858

Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               + V  +   MT        +PL+ +    K +
Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/693 (15%), Positives = 188/693 (27%), Gaps = 146/693 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSDL 57
           +  +D ET     L           A +   + A                  +     +L
Sbjct: 343 RFALDTETTGLDAL----------SADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDEL 392

Query: 58  L----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNA 112
                  L D  +  +AHN+ ++  +     G+ +    +  T + A   G    SLK  
Sbjct: 393 KRYLGPVLADVGIGKIAHNAKYDLHILAGA-GLLVAGLDF-DTMLAAHLLGESSLSLKGL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L           G+    R  K        +        A      Y     E  +
Sbjct: 451 AFNRLGIEMTPITALIGEG---RHQKCISTCGLRETADYACADADMTLRLYQLLLPELEK 507

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E   RL    + E  L  +   +   G  +D+ ++  +   + ++  +++  I +  +  
Sbjct: 508 ENQSRLFD--EVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAIYEQANRP 565

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF    + +   +     T  ++L           LIL     +   
Sbjct: 566 F-NIASPRQLGEVLFEELKLPVGRKTRSGYRTDAAVLEGLKDEHEIVRLILEYRTLAKLK 624

Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   VS  DGRL  +      + TGR S      QN+P                
Sbjct: 625 STYVDILPAMVSARDGRLHTSFNQA-RTATGRLSSSDPNLQNIP---------------- 667

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G     +R   +A  G  L+ AD + I+ R LA ++G+   I AF   ED
Sbjct: 668 --------VRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEED 719

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T    +  P D+++ E R   K +                    G+      Q   
Sbjct: 720 IHTATAMSLYGLPRDEITPEMRRFAKTVNF--------------GVIYGMSGYGLEQA-- 763

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                        ++         + +  ++ GV        E 
Sbjct: 764 ----------------------------TEMSREESTRFIQTYFERYPGVRAYLNLTKEQ 795

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +                           RR    D+              
Sbjct: 796 ARSRGYVETIL--------------------------GRRRYIPDINAAN---RQVREAA 826

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641
            R            VQ  S DI+   M    +          ++L VHDE++ E P    
Sbjct: 827 ERMAI------NMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAEL 880

Query: 642 FSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  L    M+        +PL+ +      +
Sbjct: 881 MFMSELASRRMSAAVE--LKVPLRVDIKYGANW 911


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D +   +  +  ++  +     GI +       T + +          + + 
Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                           +   EY   D + T 
Sbjct: 460 ALRHLGVRTIKYEDVAGKGAQQIG---------------FDEVPLEQASEYAAEDADITL 504

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA    +L
Sbjct: 505 QLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIEL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           ++    L  G   +      +    F    +         +  T + +L           
Sbjct: 565 EQQAYGLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ + GR+        A  TGR +      QN+P    
Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G K+V AD + IE R++A I+ +
Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWL---------P 824

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P++    V   L  +M         +PL AE    + +
Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 190/703 (27%), Gaps = 160/703 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----------QS 51
           +  +D ET    P            A +   + AW                       ++
Sbjct: 333 RFAVDTETTDLHP----------HSAELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRA 382

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            + + L   L    +     N  ++  +FK+   I +       + + +          +
Sbjct: 383 DVLAALKPLLESPEIGKTGQNIKYDYQIFKRYH-ITMQGIE-RDSMLYSYLLYGANRAHN 440

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L  +    +   GK                            L   Y   D 
Sbjct: 441 LDAIATEELGRTTIKFEDVAGKGRKR---------------IRFDQVPLHLAAPYACEDA 485

Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           E T +    + P  D E           R L  +   +   G  +D D++  +    ++ 
Sbjct: 486 EVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKR 545

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272
           R +L E+I +L  G + +   T  L   LF   GI     ++      +  +   ++  +
Sbjct: 546 RARLVEEIHELA-GEVFNVNSTQQLGHILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGE 604

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +L   + +       + L   +    GR+  +      + TGR S      QN+P
Sbjct: 605 KIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAV-TLTGRLSSSDPNLQNIP 663

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R+  IA  G  L+ AD + IE RVLA 
Sbjct: 664 ------------------------IRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAH 699

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +       +AF  G DI+  T A+ F  P+ +V+ E R + K +   L Y          
Sbjct: 700 MGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSP-----F 754

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L +Q           F  ++    H              + L G  C +      
Sbjct: 755 GLAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRDARAHGFVETLGGRRCPI------ 808

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
              + +    + L E             +                          +L   
Sbjct: 809 ---RDINATQRSLREFAERTAINAPLQGSASDLI---------------------KLAMI 844

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
            + G                                                +VL VHDE
Sbjct: 845 RLHGALQAGGFKAR--------------------------------------MVLQVHDE 866

Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E PD    +V  +    M    +    +PL  +    + +
Sbjct: 867 LVLEVPDKELAAVKEVVRSCMEGVMT--LSIPLVVDMGVGQNW 907


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 110/700 (15%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQY 60
           +   D ET     +             I   + A +          E+        +   
Sbjct: 388 EFCFDTETTG-FDIF---------NDRIVGLSLAVEPFKAWYVPFLEKDTPEYAEIVRPL 437

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALN 117
             DE +  +  N  F+ ++ ++ LGI I   R   T +L          ++       LN
Sbjct: 438 FEDEKIAKIGQNIKFDLMVLRR-LGITIRG-RMYDTMILHYLLDPESRHNMNALAEKYLN 495

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +     +   GK                       +   +   EY   D + T +L + L
Sbjct: 496 YKPIEIETLIGKGSKQL---------------TMDLVNVERVKEYAAEDADVTLQLKQAL 540

Query: 178 IPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P+ +           E  +  +   I   G RID + +      + ++  +L+  I   
Sbjct: 541 YPMIEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRTE 600

Query: 228 TDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282
                 +      L   LF    I +   M++     T +  L          DLIL   
Sbjct: 601 AGEPNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDLILEYR 660

Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                    +  L + V+ S GR+  +      + TGR S      QN+P          
Sbjct: 661 GVKKLLSTYVEALPQLVNRSTGRIHTSFNQAV-TATGRLSSTNPNLQNIP---------- 709

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I   +   L+ AD + +E R++A ++G++  I 
Sbjct: 710 --------------VRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIA 755

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GEDI+  T AK FN  +D+V+ E+R   K                      G+   
Sbjct: 756 AFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANF--------------GIIYGISAF 801

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             SQ ++                              +     + +   + A + GV + 
Sbjct: 802 GLSQRLE------------------------------IPRKEAKEIIDGYFASYPGVKKY 831

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++ E                                 +     RR   +D+    +  
Sbjct: 832 MDNVVEKAKEEG--------------------------FVSTIFGRRRYLNDIASHNAIA 865

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                +               +Q  + DI+   M N  +          ++L VHDE+V 
Sbjct: 866 RGLAERN---------AVNAPIQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVV 916

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +    V  +    M         + L A+      +
Sbjct: 917 DMLRSEQERVTAIVTECMESAAQ--LKVRLIADAGVGGNW 954


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 104/691 (15%), Positives = 186/691 (26%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D   + VAHN  F+  +  K   I+I  K    T ++A          + +
Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDIDS 429

Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167
                L           G  K               Y    A+   + +  F    ++D 
Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L ++   +   G +ID   +++    +    K+L+     L
Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283
                 +      LR  LF   G+  V  +      T + +L           LI+    
Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S       + L + + ++GR+  +    G + TGR S      QN+P            
Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  +V AD + IE R++A ++ +   +K F 
Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
              DI+  T A+     ID+VS EQR   K +   L Y               L++ +  
Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +   + +    ++   +    + ++G    L           +      
Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                            +K     +N  
Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            SQ                       +   M             VHDE+V E   T    
Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V  + S+M         +PL+      K +
Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 110/695 (15%), Positives = 190/695 (27%), Gaps = 143/695 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
           + + ID ET S            A  A +   + A+                        
Sbjct: 397 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSL 109
            +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L
Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504

Query: 110 KNACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                  L       +   GK    I         +  Y    A+     +       + 
Sbjct: 505 DELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQM 562

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E   E+++++      E  +  +   +   G +ID   + +    +  E  KL++    
Sbjct: 563 DEKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYA 616

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILN 280
             D    +      L+  LF   GI        ++    T +++L           +IL 
Sbjct: 617 AADQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQ 675

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             + +       + L E +S  DGR+  T     A  TGR +      QN+P        
Sbjct: 676 NRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-------- 726

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR    A  G  +V AD + IE R++A ++G+   I
Sbjct: 727 ----------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +
Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGI 825

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              S        F  +     +    ++Q       + L G    L           +  
Sbjct: 826 DNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRN 876

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              +   G                     ++  R+     I                   
Sbjct: 877 KNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI------------------- 917

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                             M         +VL        E  +T
Sbjct: 918 ------------------------GS-----KLVM-QVHDE---LVL--------EVVET 936

Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   L  +M K       +PL AE    + +
Sbjct: 937 ELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 971


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 102/687 (14%), Positives = 194/687 (28%), Gaps = 132/687 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
             +  D ET S   L           A +   A++W+              E   +  +L
Sbjct: 369 KSVCFDTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEEL 418

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +  ++ +  +  N  ++  +  K   ID+       T +           ++      
Sbjct: 419 RNFFENDKIEKIGQNLKYDIKVLDKYK-IDVKG-ALFDTMIAHYLINPDMRHNMDVLAET 476

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN++        GK    +      D      T      A   F      + E      
Sbjct: 477 YLNYTPQPISELIGKKGKNQGSM--RDVALDKQTEYAVEDADITFQLKNLFEKELEEAET 534

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           ++L    + E  L  +   +   G ++D + +  L E +A + K L+  I +        
Sbjct: 535 RKLFN--EIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEEFL- 591

Query: 235 SRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 L + LF    +      ++     T + +LS           +L+         
Sbjct: 592 ISSPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDYRGLVKLQN 651

Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V    GR+        A  TGR S      QN+P                 
Sbjct: 652 TYVDALPNQVERTTGRVHTDYVQTTA-ATGRLSSNNPNLQNIP----------------- 693

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          VR   +       L+ AD + IE R++A ++ E+  I+AF +GED
Sbjct: 694 -------IRTERGKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQAFKDGED 746

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+ +T AK FN P+++V++EQR+  K +   + Y                 L +      
Sbjct: 747 IHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTSLSRSESKEL 801

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             + ++ + +  +      +   E      ++G    L     R            +   
Sbjct: 802 IDTYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAI---------VRGA 852

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                       +                          +L   ++       N      
Sbjct: 853 AERNAVNAPIQGSAADII---------------------KLAMINIHKKLKEENY----- 886

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT- 646
                                               ++L VHDE+V +        V   
Sbjct: 887 ---------------------------------KTKMLLQVHDELVFDAHKDELEKVQKM 913

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + S M     +   +PL  +    K +
Sbjct: 914 IKSEMENA--YKLEVPLDVDLGVGKNW 938


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 112/708 (15%), Positives = 204/708 (28%), Gaps = 154/708 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-----------SAM 53
           D ET    P            A +      W      V                   + +
Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGMGENDVAYIPLGHNITTNLEKNLQLNTV 441

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
            S L + L          N+ F+R++FK   G+ +         + +         +L +
Sbjct: 442 LSTLDKILASRDYPKTFQNAKFDRLIFK-YQGVTLDGV-IFDPMLASYLLNPDHTHNLTD 499

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L            K+      K   D             +      YC + V AT
Sbjct: 500 LALRYLGLQLTEYDHIVQKSGKKEPQKTIAD------------ISIHTVANYCGKQVYAT 547

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +L  +L    +            E+ L ++   +  RG  I+   + +L + I  +   
Sbjct: 548 WQLVGKLREELNKIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQYIESDLAT 607

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL- 273
           L+    K+      +      L   LF   G+             T  + L         
Sbjct: 608 LEIKATKIAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDET 666

Query: 274 -AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              D I+     +      ++ L E V+    R+  +     A+ TGR S      QN+P
Sbjct: 667 GFVDAIIEYRTLAKLKSTYVDALPELVNHKTQRIHTSFNQT-ATATGRLSSSNPNLQNIP 725

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                        S  +R   +  +G  +V AD + IE R+LA 
Sbjct: 726 ------------------------IRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAH 761

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ E   I+A++N +DI+  T    F+   + V+ E+R   K +   + Y  G   F   
Sbjct: 762 LSQEPMLIQAYSNNQDIHTLTAKLLFDK--EDVTSEERRFAKTINFGVIYGMGVLKF--- 816

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                  + +   N       + +    ++   ++ Q       + ++G           
Sbjct: 817 --SRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDF---- 870

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                     K L E                          + K    I L         
Sbjct: 871 --------TNKTLREF-------------------------KGKDLQEIEL--------- 888

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627
                   L    + L+R            +Q  S DI+   M    +        ++L 
Sbjct: 889 ---NKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVRLHQVLRPYQTKLLLQ 939

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           VHDE+V E P + +  +   + S+M         +PL  + +  + + 
Sbjct: 940 VHDELVFEVPPSEWDELQLQIKSVMENAMK--LSVPLVVDVHVGENWM 985


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 93/703 (13%), Positives = 181/703 (25%), Gaps = 164/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD----RTEQSAMPSDL 57
             +  D ET              A Q  +   +++                E   +  + 
Sbjct: 363 KSICFDTETTGTD----------ANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEF 412

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
                +  +  +  N  F+ ++ K    + +  +    T +           ++      
Sbjct: 413 KPIFENPAIGKIGQNIKFDMLVLK-YYNVTMQGE-LFDTMLAHYIIDPDTRHNMDILAEN 470

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +S        G     +                      +   +Y   D + T +L 
Sbjct: 471 YLGYSPVSITTLIGAKGKGQG--------------TMRDVEIEKIKDYAAEDADVTLQLK 516

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   P            D E  L  +   I   G RID D + +  + +  +  KL++ +
Sbjct: 517 EVFEPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTV 576

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279
            +       +      L   LF    +D     ++     T + +L            IL
Sbjct: 577 YEKAGVKF-NIASPKQLGEVLFEKLNLDAKAKKTKTGQYQTGEDVLLALANKSDIVRDIL 635

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L   V+   GR+  +     A  TGR S      QN+P       
Sbjct: 636 DFRQLQKLKSTYVDALPLMVNPKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP------- 687

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   I   +   +V AD + IE R++A I+ +  
Sbjct: 688 -----------------IRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDAN 730

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AF  G DI+  T AK +   +D+V    R                            
Sbjct: 731 MMDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNA------------------------- 765

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              +A +  +         +    +       +   + A++ G+
Sbjct: 766 -------------------KAVNFGIIYGQSAFGLSQNLNIPRKEAADIIDQYFAQYPGI 806

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                D                                    +     RR    D+    
Sbjct: 807 KNYMSDTMNFARENG--------------------------FVQTLMGRRRYLRDINSAN 840

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631
           + +        R            +Q  + D++   M N        K    + + VHDE
Sbjct: 841 ATVRGYA---ERNAINAP------IQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDE 891

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V +   +    V  +    M         +P+  E      +
Sbjct: 892 LVFDVHQSEIEIVKPIIMQNMQTAFK--TEVPIVVEIGTGANW 932


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 96/688 (13%), Positives = 192/688 (27%), Gaps = 135/688 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             L +D ET S   +          QA +   ++A +++         DR E     +  
Sbjct: 348 KVLSLDTETTSTDTM----------QAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E ++ V  N  ++  +  +  GIDI  K +  T +        L  ++      
Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY-GIDIKGKMF-DTMIAHYLIQPELHHNMDYMAET 455

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172
            L +         G K    +  +    +  Y+    +     QL+     +  E   E 
Sbjct: 456 LLGYKTVHIDELIGAKGKHQKNMRDLSPTDIYEYASEDADITLQLYKVLEPKLKEVNAED 515

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           LF ++      E  L  +   +   G  +D D + +  ++      + +  I +      
Sbjct: 516 LFWKI------EMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQASEKF 569

Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287
            +      +   LF    I +    ++     T + +L     +      IL        
Sbjct: 570 -NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNILKYRGIKKL 628

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L + ++   G +  +      + TGR S      QN+P               
Sbjct: 629 LSTYIDALPKLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP--------------- 672

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R C I         AD + IE R++A ++ ++  ++AF +G 
Sbjct: 673 ---------VRTDDGKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSGH 723

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T AK ++ P+++VS  QR   K     + Y        T      + +       
Sbjct: 724 DIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYG-----ITTYGLAQRMGIPNGEAKE 778

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                F+ +   ++     +    E    + L            R     +      +  
Sbjct: 779 LIEGYFKTFPSVKAFMEKAKQTAREKGYAETLFNR---------RRYLSDINSKNGTVRG 829

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                         +            +
Sbjct: 830 FAERNA----------------------------------------INAPIQGTEADIIK 849

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
           +   R +     ENI                      ++L VHDE+           V  
Sbjct: 850 VAMIRIWERFRRENI-------------------RSKMILQVHDELNFSVFPEEKEKVER 890

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    M         +PL A+      +
Sbjct: 891 IVIEEMQAAYP--LNVPLVADAGWGNNW 916


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/721 (14%), Positives = 180/721 (24%), Gaps = 177/721 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
            + +D ET +            A +A +   + A                           
Sbjct: 449  IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498

Query: 50   ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                                  L   L D   + V  N  ++  +  +     I    + 
Sbjct: 499  GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFD 555

Query: 95   CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T +++           +       L           G                      
Sbjct: 556  DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200
                A      Y   D + T  L++ + P    E            L  +   +   G  
Sbjct: 601  FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
            ID +++ +L    +Q   +L+E+I +   G          +   LF   G+     +   
Sbjct: 661  IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719

Query: 260  ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  ++L             ILN    S       ++L +          T     A+
Sbjct: 720  QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +R   +A  GKK
Sbjct: 780  TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+++ + R   K +
Sbjct: 816  LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +   +      FE +     +    +    E    
Sbjct: 876  NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L G  C          +  +                                      
Sbjct: 931  TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                    +      L  +R              +R      M 
Sbjct: 968  -----------------ADIIRRAMTRMEDALEAKRL------------TAR------ML 992

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672
                      L VHDE+V E PD     ++  +  +M + P+ A  L  PL  E   A  
Sbjct: 993  ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042

Query: 673  Y 673
            +
Sbjct: 1043 W 1043


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/721 (14%), Positives = 180/721 (24%), Gaps = 177/721 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
            + +D ET +            A +A +   + A                           
Sbjct: 454  IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 503

Query: 50   ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                                  L   L D   + V  N  ++  +  +     I    + 
Sbjct: 504  GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFD 560

Query: 95   CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T +++           +       L           G                      
Sbjct: 561  DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 605

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200
                A      Y   D + T  L++ + P    E            L  +   +   G  
Sbjct: 606  FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 665

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
            ID +++ +L    +Q   +L+E+I +   G          +   LF   G+     +   
Sbjct: 666  IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 724

Query: 260  ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  ++L             ILN    S       ++L +          T     A+
Sbjct: 725  QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 784

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +R   +A  GKK
Sbjct: 785  TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 820

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+++ + R   K +
Sbjct: 821  LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 880

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +   +      FE +     +    +    E    
Sbjct: 881  NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 935

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L G  C          +  +                                      
Sbjct: 936  TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 972

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                    +      L  +R              +R      M 
Sbjct: 973  -----------------ADIIRRAMTRMEDALEAKRL------------TAR------ML 997

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672
                      L VHDE+V E PD     ++  +  +M + P+ A  L  PL  E   A  
Sbjct: 998  ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1047

Query: 673  Y 673
            +
Sbjct: 1048 W 1048


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 189/701 (26%), Gaps = 156/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 374 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 423

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 424 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 481

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                         A +   EY  +D + 
Sbjct: 482 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 526

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 527 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 586

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++   +      +      L+  LF   GI        ++    T +++L         
Sbjct: 587 EQEAYAVAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 645

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 646 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 702

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 703 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 740

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  G         
Sbjct: 741 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 795

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 796 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 847

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++               R LV  D+
Sbjct: 848 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDL 894

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           K                          I+Q                    +VL       
Sbjct: 895 KSKL-----------------------IMQ-------------VHDE---LVL------- 908

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P+     V   L  +M K       +PL AE      +
Sbjct: 909 -EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 948


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/721 (14%), Positives = 183/721 (25%), Gaps = 177/721 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
            + +D ET +            A +A +   + A                           
Sbjct: 449  IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498

Query: 50   ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                                  L   L D   + V  N  ++  +  +  GID+    + 
Sbjct: 499  GAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRP--FD 555

Query: 95   CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T +++           +       L           G                      
Sbjct: 556  DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200
                A      Y   D + T  L++ + P    E            L  +   +   G  
Sbjct: 601  FDHVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
            ID +++ +L    +Q   +L+E+I +   G          +   LF   G+     +   
Sbjct: 661  IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719

Query: 260  ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  ++L             ILN    S       ++L +          T     A+
Sbjct: 720  QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +R   +A  GKK
Sbjct: 780  TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+++ + R   K +
Sbjct: 816  LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +   +      FE +     +    +    E    
Sbjct: 876  NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L G  C          +  +                                      
Sbjct: 931  TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                    +      L  ++              +R      M 
Sbjct: 968  -----------------ADIIRRAMTRMEDALEAKKL------------TAR------ML 992

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672
                      L VHDE+V E PD     ++  +  +M + P+ A  L  PL  E   A  
Sbjct: 993  ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042

Query: 673  Y 673
            +
Sbjct: 1043 W 1043


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/721 (14%), Positives = 183/721 (25%), Gaps = 177/721 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
            + +D ET +            A +A +   + A                           
Sbjct: 449  IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498

Query: 50   ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                                  L   L D   + V  N  ++  +  +  GID+    + 
Sbjct: 499  GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRP--FD 555

Query: 95   CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T +++           +       L           G                      
Sbjct: 556  DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200
                A      Y   D + T  L++ + P    E            L  +   +   G  
Sbjct: 601  FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
            ID +++ +L    +Q   +L+E+I +   G          +   LF   G+     +   
Sbjct: 661  IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719

Query: 260  ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  ++L             ILN    S       ++L +          T     A+
Sbjct: 720  QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +R   +A  GKK
Sbjct: 780  TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+++ + R   K +
Sbjct: 816  LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +   +      FE +     +    +    E    
Sbjct: 876  NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L G  C          +  +                                      
Sbjct: 931  TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                    +      L  ++              +R      M 
Sbjct: 968  -----------------ADIIRRAMTRMEDALEAKKL------------TAR------ML 992

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672
                      L VHDE+V E PD     ++  +  +M + P+ A  L  PL  E   A  
Sbjct: 993  ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042

Query: 673  Y 673
            +
Sbjct: 1043 W 1043


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 198/707 (28%), Gaps = 150/707 (21%)

Query: 8   IETRSPQPLP----KVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTE--QSAMPS---- 55
           +ET +   +P              A +      W    +              +      
Sbjct: 371 LETFTNPDIPVAWDTETSDLEPRDATLVGIGCCWGTQPDESAYIPIAHKFGENLSQDVVF 430

Query: 56  -DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
            +L   L          N  F+R++F +  GI +       T + +       P +L + 
Sbjct: 431 AELSPILTSADYPKTFQNGKFDRLVF-RCQGIKLAGI-VFDTMLASYVLNPDTPHNLNDI 488

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +    K                         +    G YC   V AT 
Sbjct: 489 SLRYLGLILKSYEDLVPKGQ------------------TIADISIASVGYYCCLQVHATF 530

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L ++L    +            E+ L  +   +   G  I+   + +L + +  +  KL
Sbjct: 531 QLVQKLREELEKFPALHKLLLEVEQPLEAVLAEMEYTGVCINSAYLHELSQQLEIDLAKL 590

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL-- 273
           + +      G   +      L + LF   G+             T  + L          
Sbjct: 591 E-ETATSIAGETFNLGSPKQLSVILFDKLGLSTKYSRKIKTGYSTDVATLEKLQEVDETG 649

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             D ++     S      ++ L   V  D  RL         + TGR S      QN+P 
Sbjct: 650 FVDAMMEYRTLSKLKSTYVDALPALVRPDTQRLHTNFNQTV-TATGRLSSSNPNLQNIP- 707

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                       S  +R   +  +G  +  AD + IE R+LA +
Sbjct: 708 -----------------------IRTAFSRQIRKAFLPESGYLMAAADYSQIELRILAHL 744

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + E   ++A+   EDI+  T    F      ++ ++R I K +   + Y  G+  F    
Sbjct: 745 SQEPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRF---- 798

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 + +   N       E + Q  ++   ++ Q       + ++G    +  K    
Sbjct: 799 -SRSTGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILGRRRYVDFKN--- 854

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
                                               L   ++ +   I L          
Sbjct: 855 ----------------------------------DSLRKLKNSKPEDIDL---------- 870

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628
                  L    + L+R            +Q  S DI+   M    +        ++L V
Sbjct: 871 --SKLKNLGPEDAGLLRSAANAP------IQGSSADIIKIAMIRMHEVLQKYQARLLLQV 922

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           HDE+V E P   +  +   + S+M    +    +PL  +      + 
Sbjct: 923 HDELVFEVPPQEWEELQPQIKSVMENAVT--LSVPLLVDVRAGDNWM 967


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 185/701 (26%), Gaps = 157/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                         A +   EY  +D + 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F T  + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++  R+     I             
Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI------------- 872

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                   M         +VL       
Sbjct: 873 ------------------------------GS-----KLVM-QVHDE---LVL------- 886

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +T    V   L  +M K       +PL AE    + +
Sbjct: 887 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/721 (14%), Positives = 183/721 (25%), Gaps = 177/721 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
            + +D ET +            A +A +   + A                           
Sbjct: 449  IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498

Query: 50   ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                                  L   L D   + V  N  ++  +  +  GID+    + 
Sbjct: 499  GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRP--FD 555

Query: 95   CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T +++           +       L           G                      
Sbjct: 556  DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200
                A      Y   D + T  L++ + P    E            L  +   +   G  
Sbjct: 601  FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
            ID +++ +L    +Q   +L+E+I +   G          +   LF   G+     +   
Sbjct: 661  IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719

Query: 260  ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  ++L             ILN    S       ++L +          T     A+
Sbjct: 720  QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +R   +A  GKK
Sbjct: 780  TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE R+LA IA      +AF  G DI+  T +  F   +D+++ + R   K +
Sbjct: 816  LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +   +      FE +     +    +    E    
Sbjct: 876  NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L G  C          +  +                                      
Sbjct: 931  TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                    +      L  ++              +R      M 
Sbjct: 968  -----------------ADIIRRAMTRMEDALEAKKL------------TAR------ML 992

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672
                      L VHDE+V E PD     ++  +  +M + P+ A  L  PL  E   A  
Sbjct: 993  ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042

Query: 673  Y 673
            +
Sbjct: 1043 W 1043


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 108/709 (15%), Positives = 203/709 (28%), Gaps = 159/709 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQS--------AM 53
           + ID ET    P            A +    + W   D  +                  +
Sbjct: 396 VAIDTETTDLNPFR----------AQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEV 445

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L  +L   T      N+ ++R++  +  G+++       T +           +L+ 
Sbjct: 446 LEALAPWLASPTQRKCLQNAKYDRLVLLRH-GLELNGVAV-DTLLADYLRDASARHNLEE 503

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                  F         GK                           +   +YC  DV  T
Sbjct: 504 LAQRHYGFRPTSFSDLVGKGQ------------------TFADVPIEAAAQYCGMDVHLT 545

Query: 171 RELFKRLIPLSDGERDLWL------------LDQTINDRGYRIDLDLVLKLQELIAQERK 218
             L   L+   +   +               +   +   G RID+  + +L + +  + +
Sbjct: 546 YRLAIDLVQQLEQLGEALPQLLSELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQ 605

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQL 273
           +L++  +        +      L   LF   G+D            T  ++L        
Sbjct: 606 QLEQQAIAAAGEEF-NLASPKQLGELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHP 664

Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              L+L     S      ++ L + V S  GR+         + TGR S      QN+P 
Sbjct: 665 VVPLVLEHRTLSKLKSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPNLQNIP- 722

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                       S  +R   +      L+ AD + IE R+L  +
Sbjct: 723 -----------------------VRTAYSRQIRKAFLPQKDWTLLSADYSQIELRILTHL 759

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
            GE+  ++A+ +G+D++  T     +    +VS E+R +GK +   + Y  GA+ F    
Sbjct: 760 CGEEALVEAYNSGDDVHALTARLLLDKS--EVSDEERRLGKTINFGVIYGMGAQRF---- 813

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 + Q       +   + + +  +   W +         + L+G            
Sbjct: 814 -ARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRRPFHFD---- 868

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
                                               L   +      I L  +RR     
Sbjct: 869 ---------------------------------PQGLGRLKGTDPAEIDLDVARR----- 890

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626
                       +Q +R            +Q  S DI+ + M +  +          ++L
Sbjct: 891 --------GGMEAQQLRAAANAP------IQGSSADIIKKAMVDLQQLLLDQQLPARLLL 936

Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            VHDE+V E       +V  ++   M +  S    +PL  E      + 
Sbjct: 937 QVHDELVLECAPNALATVQSSVQRTMEQAVS--LSVPLVVEIGSGPNWM 983


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 90/696 (12%), Positives = 184/696 (26%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K     + Y               +
Sbjct: 744 MIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +          FE +   +++         E    + +      L           +
Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   ++   R Y    TE  +QA                   ++L VHDE+    P
Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +        ++   +PLKA+    K +
Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 101/702 (14%), Positives = 191/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
            + +D ET S   +           A +   +++ ++          DR E + +     
Sbjct: 349 FVSLDTETTSTDAI----------SAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E ++ +  N  ++  +     G+ +  K +  T +        L  ++       
Sbjct: 399 PLYENEQILKIGQNIKYDYEVLS-HYGVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETL 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K    R  +    +  Y               EY   D + T  L 
Sbjct: 457 LGYRTIHIEELLGPKGKKQRNMRDLSPTDIY---------------EYAAEDADITLRLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G  +D + + +   +     K+ +++I
Sbjct: 502 HVLEPHLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            K   G   +      +   LF    I D    ++     T + +L            IL
Sbjct: 562 YKEA-GETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N           ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQ-TSTGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I  +G     AD + IE R++A ++G++  
Sbjct: 673 -----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF  G DI+  T AK ++  I+KV+  QR   K                      G+ 
Sbjct: 716 MEAFREGHDIHRATAAKIWHEDIEKVTDAQRKKAKQAN--------------FGIIYGIT 761

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               +Q                                 +  +    + + +      V 
Sbjct: 762 TYGLAQR------------------------------MGIPNSEARELIQDYFHTFPKVK 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +   E                                       RR    D+    +
Sbjct: 792 AYMEQAKETARAKGYAETLFH--------------------------RRRYLPDINSRNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
              T      R            +Q    DI+   M    K          ++L VHDE+
Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M         +PL A+      +
Sbjct: 877 NFSVYPEEREQVERIVIEEMQHACQ--LNVPLTADAGWGSNW 916


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 89/696 (12%), Positives = 183/696 (26%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K     + Y               +
Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +          FE +   +++         E    + +      L           +
Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   ++   R Y     E  +QA                   ++L VHDE+    P
Sbjct: 870 QGSAADIIKVAMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVP 910

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +        ++   +PLKA+    K +
Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 192/694 (27%), Gaps = 135/694 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 398 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  YL +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +       +  
Sbjct: 506 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQMD 563

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 564 EKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 617

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 618 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 676

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 677 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 726

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 727 ---------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 771

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F T  + VS EQR   K +   L Y  G            L + 
Sbjct: 772 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 826

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F+ +     +    ++Q       + L G    L           +   
Sbjct: 827 NLSAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 877

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                     ++            P    L            
Sbjct: 878 NANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELL------------ 925

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                 Q+         M         +VL        E  +T 
Sbjct: 926 ----------------------QS------KLIM-QVHDE---LVL--------EVVETE 945

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 946 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 107/696 (15%), Positives = 197/696 (28%), Gaps = 149/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
             +D+ET S  P              I   + ++  +         +         +   
Sbjct: 320 FAVDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L + L D     V  N  F+  +     G++ P      T + A          +L +  
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA 427

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L +     +     +    F     D P       +   A   +  Y    ++    
Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEA 486

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L      +   E  L  +   +   G  +D + + KL E   ++ ++L E+I ++    
Sbjct: 487 DLENVFYKI---EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543

Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      +   LF   GI             T   +L           LIL       
Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + V+   GR+  +    G + TGR S      QNLP              
Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  I+       +V AD + IE R+LA ++G++  +KAF  
Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEE 697

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ FN   ++V++E R               A      +   G+     S 
Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                        V+  +     E +   +   +  V    + +
Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                           RR         R  +                             
Sbjct: 774 VSEAKEKGYVRTLFGRRRDIPQLMARDRNTQ----------------------------- 804

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
           ++  R            +Q  + DI+   M          K    +++ VHDE+V E PD
Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPD 858

Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               + V  +   MT        +PL+ +    K +
Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 90/696 (12%), Positives = 184/696 (26%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K     + Y               +
Sbjct: 744 MIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +          FE +   +++         E    + +      L           +
Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   ++   R Y    TE  +QA                   ++L VHDE+    P
Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +        ++   +PLKA+    K +
Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 186/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +++ +           +            + 
Sbjct: 41  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 90

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L D     +  +  ++  +     GI +       T + +          + + 
Sbjct: 91  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 148

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   G+                               EY   D + T 
Sbjct: 149 ALRHLGVKTIKYEDVAGQGAQQIG---------------FDEVPLAQAFEYAAEDADITL 193

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             D E  + L+ + +   G  ID D + +    IA     L
Sbjct: 194 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 253

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +++   L  G   +      +    F    +         +  T + +L           
Sbjct: 254 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 312

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+ D GR+        A  TGR +      QN+P    
Sbjct: 313 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 367

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G K+V AD + IE R++  I+ +
Sbjct: 368 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISED 407

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AFA+GEDI+  T A+ F     +V+ +QR I KV+   L Y        +     
Sbjct: 408 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 462

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    + +  E    + + G    L          
Sbjct: 463 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 513

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                                 
Sbjct: 514 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 545

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +      L R    GG     I+Q                    +VL        E
Sbjct: 546 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 574

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     V   L  +M         +PL AE    + +
Sbjct: 575 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 611


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 202/717 (28%), Gaps = 167/717 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQ----------- 50
           + ID ET S  P            A +    + W +  + +                   
Sbjct: 387 VAIDTETTSLNPFK----------AELVGLGFCWGENLDDIAYIPLGHNSQGELKDQSIR 436

Query: 51  -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                  +   L  +L       V  N+ ++R++F    GI +     + T +    +  
Sbjct: 437 QQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIFL-HNGIPLEGV-VMDTLLADYLSNS 494

Query: 106 P--SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               SL         F+    K   GK                                Y
Sbjct: 495 TNKHSLDEIAKREYGFTPINFKELVGKG------------------ETFKDVDIDTASIY 536

Query: 163 CKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           C  DV  TR+L  R+                  E+ L  +   +  RG  ID+  + +L 
Sbjct: 537 CGMDVYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELS 596

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSIL 265
           + + Q  K L+E   K       +      L   LF    +D            T  ++L
Sbjct: 597 KELNQTLKGLEEQAYKSAGFEF-NLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVL 655

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324
                      L++     S      ++ L + V +  GR+         + TGR S   
Sbjct: 656 ERLEADHPLVPLLVEHRTLSKLVSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSN 714

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                             S  +R   +     KL+ AD + I
Sbjct: 715 PNLQNIP------------------------IRTEFSRRIRKAFLPQENWKLISADYSQI 750

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA ++GE+   +A+ NG+D++  T         + ++  +R +GK +   + Y  G
Sbjct: 751 ELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYGMG 808

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
           A   +  A   GL+  Q           E + +  S     +           L+G    
Sbjct: 809 A---QRFARSTGLN--QSEAKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGRRRY 863

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                                                       L        ++I L  
Sbjct: 864 FNFDK-------------------------------------NGLGRLLGSDPMNIDLKR 886

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
           +RR                 +Q +R            +Q  S DI+   M          
Sbjct: 887 ARRA-------------GMEAQQLRAAANAP------IQGSSADIIKIAMVQLATKLKVS 927

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
               +++L VHDE+V E   +    V  +  S M      A  +PL         + 
Sbjct: 928 GVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENAVHLA--VPLVVHASIGDNWM 982


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 102/711 (14%), Positives = 193/711 (27%), Gaps = 182/711 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
               D ET S  P+          QA +   + A                          
Sbjct: 380 YFSFDTETTSLNPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEDNLLGGGRI 429

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
                     + L   L ++ V+ +  N  ++ ++ K+    +I    +  T +L+    
Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQH---NIVMCSFDDTMLLSYALE 486

Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L       K                         +      +   
Sbjct: 487 AGISTHGMDVLSERWLGHKPISYKDLT---------------HSRRKIVSFARVDLKQAT 531

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              +R L  +   + +RG  +D  ++ +L 
Sbjct: 532 LYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLS 591

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266
             +AQ    L E+I +L      +      L   LF   G+     ++     T    L 
Sbjct: 592 GELAQTVLNLGEEIYQLVGEKF-NIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTLE 650

Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
                   L + +I  R   +       + L   +    GR+         + TGR S  
Sbjct: 651 ELAAEGHILPRKIIDWRQ-LTKLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSS 708

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R+  +AS G  L+ AD + 
Sbjct: 709 EPNLQNIP------------------------VRTAEGRKIRAAFVASKGHLLLSADYSQ 744

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA +A      +AFA G+DI+  T ++ F   ++ ++ E R   K +        
Sbjct: 745 IELRILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINF------ 798

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+     +                                  +     
Sbjct: 799 --------GIIYGISPFGLASQ------------------------------LGISRKEA 820

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
               + +  +  G+    +                                         
Sbjct: 821 SDYIQLYFERFPGIEDYMERTKIFARHYGYVETIF------------------------- 855

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RR+ Y ++K D   + +      R            +Q  + DI+   M         
Sbjct: 856 -GRRIHYPEIKTDKPQIRSF---NERAAINAP------IQGSAADIIRRAMIQMENALEK 905

Query: 621 ---GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKA 665
                 ++L VHDE++ E P +    +   +  +M     P+ +  +PL+ 
Sbjct: 906 ERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPALSLSVPLEV 956


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 108/700 (15%), Positives = 190/700 (27%), Gaps = 156/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 357 FAFDTETDGLDTLT----------ANLIGLSFAIAPGEAAYLPVAHDYLDAPTQLDRAHV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE  + V  N  F+  L  +   I +    +  T + +           + 
Sbjct: 407 LATLKPLLEDEKALKVGQNLKFDMSLLARY-DITLRGIAF-DTMLESYVLDSVGGRHDMD 464

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +    Y   D + 
Sbjct: 465 SLSDRYLGHKTVTFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADV 509

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   + P               E  L  +   I   G  ID  ++      + +   
Sbjct: 510 TLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQSILATHSIELTKRLA 569

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L +    +   T  L+  L+    + ++  +      T + +L+   +    
Sbjct: 570 ELEIQAHELAEEPF-NLASTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPL 628

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 629 PKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 685

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 686 ----------------------VRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLS 723

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  +KAFA GEDI+  T A+ F  P+DKV+ EQR   K +   L Y            
Sbjct: 724 QDEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMS-----AFGL 778

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q         L G    L        
Sbjct: 779 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAASQGYVSTLDGRRLYL-------- 830

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              V        +                   + R ++           P          
Sbjct: 831 -PDVSSSNGMRRKAAERAAINAPMQGTAADI-IKRAMIEVDAWLQAQEKP---------- 878

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH E V
Sbjct: 879 -----------------------LVRMIMQ-------------VHDE---LVFEVH-ESV 898

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       S   +  LM  + + A  +PLK +      +
Sbjct: 899 LE------ESNQRIRELMENSMALA--VPLKVDVGVGANW 930


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 189/692 (27%), Gaps = 139/692 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +       + + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGLD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNT 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++  R+     I                      
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI---------------------- 872

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E  +T   
Sbjct: 873 ---------------------GS-----KLVM-QVHDE---LVL--------EVVETELD 894

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 188/700 (26%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           +  D ET S   +           A +   ++A  +                       +
Sbjct: 333 VAFDTETTSLDQMA----------AKLVGMSFAIVEGEAAYLPLAHIYPAAPAQLPLAEV 382

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKN 111
            + L  +L  +    +  N  ++  +     G+ +       T + +       P  + +
Sbjct: 383 LAKLKPWLESDAHPKLGQNLKYDAHVLANH-GLRLGGIA-HDTLLQSYVLESDRPHDMDS 440

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L           GK +                       A +   EY   D + T
Sbjct: 441 LAKRHLGIDTIPYTAVCGKGVGQ---------------ICFDQVAIERATEYAAEDADIT 485

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L ++L P             D E     +   +   G  ID  L+ +  E + +    
Sbjct: 486 LRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMT 545

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275
           L+ +   L      +      L   LF   G+ +V  +      T + +L+         
Sbjct: 546 LEREAHDLAGQPF-NLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQLADDYPLP 604

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L+L     S       + L   V+   GR+  +     A  TGR +      QN+P   
Sbjct: 605 KLLLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVA-VTGRLASSEPNLQNIP--- 660

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+  IA     +V AD + IE R++A ++ 
Sbjct: 661 ---------------------IRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSS 699

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +++FA GED++  T A+ F     +V+ EQR   KV+   L Y   A         
Sbjct: 700 DARLLQSFAEGEDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAH-----GLA 754

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L L++ +        F  +    ++    + +       + + G    L         
Sbjct: 755 KNLGLERAAAAAYIDRYFARYPGVAAYMERTRSEARARGYVETVYGRRLYL--------- 805

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                      ++                        
Sbjct: 806 PEIRASQAGRRQAAERAAINAPMQGTAADLIKKAMI------------------------ 841

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                   AT + + +     +L                                  +V 
Sbjct: 842 --------ATRRWLADAALRSRLV----------------LQVHDE-----------LVL 866

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P     +V  TL  LMT        +PL  E    + +
Sbjct: 867 EVPRDELETVRATLPGLMTGIAD--LSVPLLVEVGHGENW 904


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 90/696 (12%), Positives = 183/696 (26%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K     + Y               +
Sbjct: 744 MIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +          FE +   + +         E    + +      L           +
Sbjct: 799 NVDRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   ++   R Y    TE  +QA                   ++L VHDE+    P
Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +        ++   +PLKA+    K +
Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 98/696 (14%), Positives = 195/696 (28%), Gaps = 153/696 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
            L +D ET S   +          QA +   +++ +           DR +   M +   
Sbjct: 374 ILSLDTETTSTNTM----------QAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIFK 423

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               ++ ++ +  N  ++  +  +  GI+I  K +  T +        L  ++       
Sbjct: 424 PLYEEDKILKIGQNIKYDYEVLAQY-GINIKGKMF-DTMIAHYLIQPELHHNMDYMAETL 481

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           LN+         G K    +  +    +  Y               EY   D + T +L+
Sbjct: 482 LNYKTIHIDELIGAKGKEQKNMRNLSPTSIY---------------EYACEDADITLQLY 526

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L+P            D E  L  +   +   G  +D D + +   +  +  +  +  I
Sbjct: 527 NVLLPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQI 586

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +       +      +   LF    I +    ++     T + +L     +      IL
Sbjct: 587 YEQAGEKF-NISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEASSPIVRNIL 645

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N           ++ L + ++   GR+  +      + TGR S      QN+P       
Sbjct: 646 NYRGIKKLLGTYVDALPKLINKRTGRIHTSFNQA-LTATGRLSSSDPNLQNIP------- 697

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I         AD + IE R++A ++ ++  
Sbjct: 698 -----------------VRTDDGKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKDENM 740

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G DI+  T AK ++ P++ V+  QR   K     + Y        T      + 
Sbjct: 741 IEAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYG-----ITTYGLAQRMG 795

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +            F  + +        ++   +    + + G          R     + 
Sbjct: 796 IPNNEAKKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGR---------RRYLNDIN 846

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +                                                +     
Sbjct: 847 SKNSTVRGFAERNA----------------------------------------INAPIQ 866

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                  ++   R Y     ENI                      ++L VHDE+      
Sbjct: 867 GTEADIIKVAMIRIYERFCRENI-------------------RSKMILQVHDELNFSVFP 907

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                V  +    M    +    +PL A+    K +
Sbjct: 908 DEKERVEHIVLEEMQAACT--LSVPLIADAGWGKNW 941


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 110/694 (15%), Positives = 190/694 (27%), Gaps = 135/694 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 398 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 448 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +       +  
Sbjct: 506 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQMD 563

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 564 EKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 617

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 618 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 676

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 677 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 726

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 727 ---------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 771

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F T  + VS EQR   K +   L Y  G            L + 
Sbjct: 772 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 826

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 827 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 877

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                     ++            P    L            
Sbjct: 878 NANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELL------------ 925

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                 Q+         M         +VL        E  +T 
Sbjct: 926 ----------------------QS------KLIM-QVHDE---LVL--------EVVETE 945

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 946 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 111/722 (15%), Positives = 189/722 (26%), Gaps = 191/722 (26%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
           + +D ET +            A  A +   + A              +            
Sbjct: 408 VAVDTETSALD----------AVGADLVGISLATGPGAACYIPLGHGNTTDMFAERPRQI 457

Query: 52  ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---- 104
                 + L   L D++V+ V  N  ++  +  +     I       T V++        
Sbjct: 458 DKARALALLKPLLEDDSVLKVGQNIKYDLTVLARH---GIAVAPIDDTMVMSFCLDAGRG 514

Query: 105 ----LPSSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                   +       L  +    K   G  K  I+       D+               
Sbjct: 515 EPMPFGHGMDELAERHLGHTTIKFKDVAGTGKKAISFAEVPLPDAT-------------- 560

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207
               Y   D E T  L   L P    E          R L  +  T+   G ++D + + 
Sbjct: 561 ---RYAAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLA 617

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKS 263
            L    A     L+  I +              L   LF   G             T +S
Sbjct: 618 TLSGEFATRIAALESVIHEKAGTTFT-IGSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQS 676

Query: 264 ILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           +L            L+L     S       + L  A++   GR+  +    GA +TGR S
Sbjct: 677 VLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVGA-QTGRLS 735

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   +A  G  L+ AD 
Sbjct: 736 SNDPNLQNIP------------------------VRTEIGRQIRDAFVAEPGHVLLSADY 771

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+ A IA      +AFA+GEDI+  T  + F     +V+++ R   K +  A+ Y
Sbjct: 772 SQIELRLAAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILY 827

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                                              A +      
Sbjct: 828 GISRWGL--------------------------------------------ATRLGTSAD 843

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             + +   +  +  G+ +   +  E                                   
Sbjct: 844 EAQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLF----------------------- 880

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
               R+  +  +          +    R            +Q    DI+   M   T   
Sbjct: 881 ---GRKTWFPRIASKTQAERAGS---ERAAINAP------IQGTCADIIKRAMARMTPAL 928

Query: 619 -KNGY---DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAK 671
            + G     ++L VHDE+V E P++   +   +   +M      A    +PL  E     
Sbjct: 929 VEAGLGHVRMLLQVHDELVFELPESDVAAASAVIERVMATAAEPAVKLSVPLGVEIGTGP 988

Query: 672 RY 673
            +
Sbjct: 989 SW 990


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 188/694 (27%), Gaps = 143/694 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI + +       + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I+        +  Y    A+     +        D 
Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQMDDK 520

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 521 QLEM--------YEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAA 572

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 573 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 631

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  D R+  T     A  TGR +      QN+P         
Sbjct: 632 RSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 681

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 682 ---------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 726

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GED++  T A+ F T  + VS EQR   K +   L Y  G            L + 
Sbjct: 727 AFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 781

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 782 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 832

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                                I  P                 
Sbjct: 833 NANARAGAERAA---------------------------INAPM---------------Q 850

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
            TA+  + R          + +           M         +VL        E  +T 
Sbjct: 851 GTASDLIKRAMINVRNWLSDGI-GS-----KLVM-QVHDE---LVL--------EVVETE 892

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 893 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 115/720 (15%), Positives = 203/720 (28%), Gaps = 167/720 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------- 50
           +  + +D ET +  P            A +      W +    +                
Sbjct: 385 LKPVALDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAELLEA 434

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                    A+   +  +L          N+ ++R++  +  G+ +     + T +    
Sbjct: 435 EAACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALEGV-VMDTLLADYL 492

Query: 103 NGL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   L+         +        GK                         A    
Sbjct: 493 RDAAAKHGLEVMAEREFKITPTGFSELVGKGQ------------------TFADVAIPTA 534

Query: 160 GEYCKRDVEATRELFK-----------RLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVL 207
             YC  DV  TR L             +L+PL +  E+ L  +   +   G RIDL  + 
Sbjct: 535 SLYCGMDVHLTRRLALRLRAQLEDMGAKLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQ 594

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262
            L   + +  ++L+E   +       +      L   LF   G++            T  
Sbjct: 595 TLSVELGETLERLEEQAREAAGVDF-NLASPKQLGELLFETLGLNRKKSRRTKTGWSTDA 653

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
           ++L           L+L     S      ++ L + V S  GR+         + TGR S
Sbjct: 654 NVLEKLEADHPVVPLVLEHRVLSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLS 712

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                             S  +R   +     +L+ AD 
Sbjct: 713 SSNPNLQNIP------------------------IRTEFSRRIRKAFLPQENWQLLSADY 748

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+L  ++GE+   +AF NG+D++  T         D+VS ++R +GK +   + Y
Sbjct: 749 SQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGVIY 806

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             GA+ F          + Q       +   + + +  +     +         + L+G 
Sbjct: 807 GMGAQRF-----ARSTGVSQAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLGR 861

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                                                          L     K  + I 
Sbjct: 862 RRPFHFDR-------------------------------------NGLGRLLGKDPMDID 884

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
           L  +RR                 +Q +R            +Q  S DI+   M    +  
Sbjct: 885 LDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKL 925

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                   ++L VHDE+V E   T    V  L    M K       +PL  E      + 
Sbjct: 926 TAADLPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKAVE--LSVPLVVETGIGDNWM 983


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 197/704 (27%), Gaps = 170/704 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----EQSAMPSDLLQ 59
             +D ET S               A +   + +                +     + L  
Sbjct: 379 FAVDTETTSLDTFT----------AELAGISCSVKPGEAFFVYFGTPGLDAKTTVARLKP 428

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            L +  +     N  ++ ++ KK  G+++    +  T + +         +L +     L
Sbjct: 429 LLENPEIPKTGQNLKYDILVLKKY-GVELAPVGF-DTMLASYVLNPEARHNLDDMAALYL 486

Query: 117 NFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                        GK  I  F                         +Y  +D +    L 
Sbjct: 487 GRQTTKYTELVGTGKQTIGIFEVEPRK-----------------LSDYACQDADIALRLR 529

Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L    +            E  L  +   +  +G  ID   + +L   +  E   L E 
Sbjct: 530 YSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTER 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I + T G   +      L   LF +  +     ++    T   +L    +       +L 
Sbjct: 590 IFEAT-GETFNIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLE 648

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             +        +  L + ++   GR+  +      + TGR S      QN+P        
Sbjct: 649 YRSLQKLKSTYIEALPKMINPLTGRVHTSFNQS-ITATGRLSSSNPNLQNIP-------- 699

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   I S  G  L+ AD + IE R+ A ++G+   
Sbjct: 700 ----------------IRTELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPML 743

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF N EDI+  T    F+T   +++ + R   K +                    G+ 
Sbjct: 744 IEAFRNHEDIHAATARVIFDT--KEITPDMRRKAKEVN--------------FGVLYGIQ 787

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               SQ                                 +     + +   + AK+ G+ 
Sbjct: 788 PFGLSQR------------------------------LGIPQKEAKEIIDTYMAKYPGMF 817

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              + + E           +                           RR    D+    S
Sbjct: 818 SSLQTIIEEAKKKGYVTTLM--------------------------GRRRYVPDLNSANS 851

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
            +  A  ++              +Q  + DI+   M + ++          ++L VHDE+
Sbjct: 852 NIRKAAERVT---------MNTPIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDEL 902

Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673
           + E P      +  +    M +  S    K +P++ +    K +
Sbjct: 903 LFEMPPDEEARLREMVERNMIEAASKCGLKNVPVEVDTGSGKNW 946


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 188/694 (27%), Gaps = 143/694 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI + +       + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I+        +  Y    A+     +        D 
Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQMDDK 520

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 521 QLEM--------YEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAA 572

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 573 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 631

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  D R+  T     A  TGR +      QN+P         
Sbjct: 632 RSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 681

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 682 ---------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 726

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GED++  T A+ F T  + VS EQR   K +   L Y  G            L + 
Sbjct: 727 AFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 781

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 782 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 832

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                                I  P                 
Sbjct: 833 NANARAGAERAA---------------------------INAPM---------------Q 850

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
            TA+  + R          + +           M         +VL        E  +T 
Sbjct: 851 GTASDLIKRAMINVRNWLSDGI-GS-----KLVM-QVHDE---LVL--------EVVETE 892

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 893 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 114/707 (16%), Positives = 203/707 (28%), Gaps = 155/707 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
           +   D ET S            A+ A +   A+A             D+ E  A+  +  
Sbjct: 364 EFCFDTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFK 413

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
           +   DE++  +A N  ++ ++ K   GI+ P  ++  T +        +  ++       
Sbjct: 414 EVFEDESIGKIAQNLKYDWVVLKNY-GIE-PKGKFFDTMLAHYLLQPDMRHNMDVLAKSY 471

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN+         GK    +      D      T      A          D +   +  +
Sbjct: 472 LNYEPVEITSLIGKKGKKQGSM--RDVELDKITEYAGEDADITLQLKEIFDAQIKAQDLR 529

Query: 176 RLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              P              + E  L  +  T+   G R+D + + KL + +A+E   L+E 
Sbjct: 530 HPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKELAKEVVVLEEK 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLI 278
           I K+  G   +      L   LF    +             T + IL            I
Sbjct: 590 IYKIA-GEQFNIASPKQLGEILFGKLQLDPKAKKTKSGQYATGEEILVKLADKNEIVQHI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           ++ L E V+   G +  +     A  TGR S      QN+P      
Sbjct: 649 LDFRGLQKLKNTYVDALPELVNKKTGLIHTSYNQAVA-ATGRLSSTNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     VR   I  +    L+ AD + IE R++A  + + 
Sbjct: 702 ------------------IRTAQGREVRRAFIPRSDEFVLLAADYSQIELRIMAEFSQDA 743

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             IKAF NGEDI+ TT +K +  P+D+V  + R   K                      G
Sbjct: 744 TMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTAN--------------FGIIYG 789

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   + +  +       + KA+  +   
Sbjct: 790 IS------------------------------AHGLSERLNIPRKEAGEIIKAYFEEFPA 819

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V Q   D+             +                           RR    ++   
Sbjct: 820 VKQYMDDMINKAREQEYVETIL--------------------------GRRRYLRNINSR 853

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHD 630
            +       +               +Q  + D++   M    +          ++L VHD
Sbjct: 854 NAVERGNAERN---------AINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHD 904

Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWA---KGLPLKAEGYEAKRY 673
           E+V +        +   +  LM    S       +P++ E  E   +
Sbjct: 905 ELVFDAHKDELGILKPAIVDLMKNALSSINRTMQVPMEVEVGEGTTW 951


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 187/702 (26%), Gaps = 157/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDL--- 57
           +   +D ET S  PL           A +   + +             +   +P  L   
Sbjct: 334 NHFALDTETTSENPLK----------AKLVGISVSLKANEAFYIPLAHKYEGVPKQLDMN 383

Query: 58  ------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108
                      +  +  +  N  ++ I+ K+  GIDI    +  T + +          +
Sbjct: 384 ETLNMLKGVFENPDIKKIGQNIKYDWIVLKRH-GIDIAGV-YSDTMIASYLINPSKRAHN 441

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L   +   +   GK                           +    Y   D 
Sbjct: 442 LDQIALDFLGHKKITFEETVGKK---------------KPESGFSNVPLEKAVSYACEDA 486

Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T      L P            + E  L  +   +  +G  +D + + +L +   Q+ 
Sbjct: 487 DITLMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQI 546

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQ 272
           + L+E+I  +      + +    L   LF    +             T   +L+      
Sbjct: 547 EDLEENIYSVAGMTF-NIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNH 605

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L     S       + L E       R+  +      + TGR S      QN+P
Sbjct: 606 ELPALVLRHRTLSKLKSTYTDALLEIADPETERIHTSFNQTV-TATGRLSSSNPNLQNIP 664

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +RS  +   G KL+ AD + IE R+LA 
Sbjct: 665 ------------------------VKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAH 700

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            A ++  I AF   EDI+  T  + F    + ++ E R   K +  ++ Y          
Sbjct: 701 CAEDEILINAFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYG-----ISAF 755

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
           +    L + Q        + F  +++ +                  L+G           
Sbjct: 756 SLSKDLGISQKMAQTYINNYFARYKEVKRFIDKTISDAHVNKKTSTLLGRI--------- 806

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +    K +      +                                   ++   
Sbjct: 807 RLLPDIDSSNKIVIAAAERIAVNTPIQGTAADLI---------------------KIAMI 845

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           ++    +                               L   M          +L+VHDE
Sbjct: 846 NIDKAFTEKK----------------------------LKAAM----------LLSVHDE 867

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E P      V  L   M +N  W   +PLK      + +
Sbjct: 868 LVFEVPPDELDMVSDLVKNMMENV-WTLKVPLKVNISSGENW 908


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 201/700 (28%), Gaps = 154/700 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + ID ET S  P+           A +   +++ +         +   ++        
Sbjct: 365 KPISIDTETTSQDPMM----------AELLGISFSEEPGVAYYIAFSHSESIYSHLLPSA 414

Query: 54  ---PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107
                 L   L D     +  N  ++ ++ K   GI++    +  T + +          
Sbjct: 415 EESLKILKPMLEDSNWKKIGQNIKYDLLVLKNY-GIELKGI-YFDTMLASYLLNPGERRH 472

Query: 108 SLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           ++ +     LN+     +     GK     +         Y C  A+          +  
Sbjct: 473 NMDDMAVDYLNYKTITYEELVGTGKKKQNLYDIDPDKVSEYACEDAD-----ITLQLHNV 527

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +    + K+L    + E  + L    +   G  +D      L      + K+ +++I
Sbjct: 528 LSPKMDENIHKKLF--YEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKEHEKNI 585

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNR 281
                G   +   T  L+  LF    +     +     T  S+L     T    D +L+ 
Sbjct: 586 H-FYAGRQFNVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIIDDLLSI 644

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S       +TL   V+    R+  +     A  TGR S      QN+P         
Sbjct: 645 RKFSKLKSTYTDTLPLLVNPKTKRIHTSYNQTIA-ATGRLSSTNPNLQNIP--------- 694

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  G +++  D + IE R++A  + +   I 
Sbjct: 695 ---------------IKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAHFSNDPNMID 739

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A+ +G DI+  T A  F  P D+V+ + R   KV+  ++ Y        +      L   
Sbjct: 740 AYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYG-----VTSFGLSNNL--- 791

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                               ++     +   + + A ++GV   
Sbjct: 792 ------------------------------------RISRKEAKEFIEKYFAAYKGVATY 815

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +++ E           +                           RR    D+      +
Sbjct: 816 MEEIVEFCKQNGYVETLL--------------------------GRRRYLPDIHSSHKMV 849

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
           +    ++            + +Q  S D++   M    +          ++L VHDE+V 
Sbjct: 850 SEGAKRV---------AINSPIQGTSADMIKIAMIQIHEKIKKESFRSKLLLQVHDELVF 900

Query: 635 ET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  P             M         +P+  +G     +
Sbjct: 901 EVDPKEKKEFFQMAKEEMESAMK--LKVPIVVQGKFGGNW 938


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
          Length = 1036

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 197/698 (28%), Gaps = 162/698 (23%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
            +  D ET                 A I     A  D                +  ++  +
Sbjct: 469  VSFDTETTGLD----------VRSATIVGLGLAIRDHHAWYIPFNSDLDKEEILKEIKPF 518

Query: 61   LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LAL 116
              D ++   A N+ F+  +     GI++ +  +  T V +           L +     L
Sbjct: 519  FADSSLKFFAQNAKFDLQML-HYAGIEVKNIDF-DTLVASFICNPSRQFHDLDSLSLHYL 576

Query: 117  NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            N+ +  T+   GK                    +      +    YC  DV+ T  L   
Sbjct: 577  NYRKISTESLIGKGKKQ---------------ISMADLPVERVATYCCEDVDITLRLRNE 621

Query: 177  LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            L              + +  L  +   + + G  I+L  + K+    + E KK +E I  
Sbjct: 622  LEAELHRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHA 681

Query: 227  LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
            L      +      + + LF   G+     +     T   +L +          IL    
Sbjct: 682  LAGHEF-NINSPKQVGVVLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIVRAILRHRT 740

Query: 284  SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             S       + L + VS  D R+        A  TGR +      QN+P           
Sbjct: 741  LSKLISTYADALPKEVSELDQRIHTRFSQTTA-ATGRLASTQPNLQNIP----------- 788

Query: 343  TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 +RS   A  G   +  D + IE R++A ++ +   ++AF
Sbjct: 789  -------------TRTAEGKSIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAF 835

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             N  D++  T +  F T + +V+K+QR                                 
Sbjct: 836  NNDFDVHTHTASLVFETELSEVTKQQRYAA------------------------------ 865

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                          +A +  +         A +  +     +     +  ++  V +   
Sbjct: 866  --------------KAVNFGIMFGQGPYGLAKEIGVSADEAKQFISNYFKRYPDVQKFMA 911

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
               E          S                            RR    ++      + +
Sbjct: 912  KCVEDARDKGYSETSF--------------------------GRRRYLPEMLSSNGRIRS 945

Query: 583  ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
               ++            + +Q  + DI+   M               ++L +HDE++ E 
Sbjct: 946  GAERIS---------VNSPIQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEV 996

Query: 637  PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD     +  L   +MT  P     +PLK +   AK +
Sbjct: 997  PDDELEIMKELIPQIMTDIPQ--IKVPLKVDCAAAKSW 1032


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 96/699 (13%), Positives = 183/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET    P+           A +   +++ +           +            + 
Sbjct: 331 SLDTETTGLDPMR----------AELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVL 380

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +L D +   +  N  F+R +F    GI +       T + +       P  + N 
Sbjct: 381 EKLKPWLTDPSAPKLGQNLKFDRHVFANH-GIGLKGI-VHDTLLQSYVFESHRPHDMDNL 438

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L           GK                           +   +Y   D + T 
Sbjct: 439 ALRHLGIKTITYDEVTGKG---------------AARIGFEQVDIERAAQYAAEDADVTL 483

Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L                 E  +  +   +   G  +D+ L+      + ++   L
Sbjct: 484 QLHQHLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLAL 543

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +E    +      +      ++  LF    +            T + +L    +      
Sbjct: 544 EERACTIAGLPF-NLNSPKQIQEILFDRLKLPVMKKTPSGVPSTDEDVLQKLALDYPLAR 602

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L+    +       + L   V    GR+        A  TGR +      QN+P    
Sbjct: 603 ALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVA-VTGRLASNEPNLQNIP---- 657

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA +G +++ AD + IE R++A I+ +
Sbjct: 658 --------------------IRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQD 697

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +KAFA GEDI+  T ++ F  P++ V+ EQR   K++   L Y              
Sbjct: 698 AGLLKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMS-----EFGLAT 752

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L +++ +        F  +     +    +    E    + + G    L          
Sbjct: 753 QLGIERAAARTYMDRYFSRYPGVADYMQRTRKTARENRYVETVFGRRLWL---------S 803

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                                        +L   +V  
Sbjct: 804 EINSSNGMRRQAAERAAINAPMQGTAADII---------------------KLAMIEVHD 842

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                       +R      KL                          +VL        E
Sbjct: 843 -----------WLRRHELRSKLVM----------------QVHDE---LVL--------E 864

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+    ++   L  LM         +PL  E      +
Sbjct: 865 VPENEIETIKRELPLLMGNVAQ--LQVPLLVEVGVGPNW 901


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 194/694 (27%), Gaps = 142/694 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 352 TIGIDTETTSLD----------AMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 402 VLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +      + D 
Sbjct: 460 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 518

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 519 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 571

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 572 ASQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 630

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 631 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 680

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 681 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 725

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +   L Y  G            L + 
Sbjct: 726 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 780

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 781 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNK 831

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                     ++               R LV  D+K      
Sbjct: 832 NANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDLKSKL--- 876

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                               I+Q                    +VL        E P+  
Sbjct: 877 --------------------IMQ-------------VHDE---LVL--------EVPEAE 892

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 893 LDLVKEKLPQIMAKVDEGMLKVPLVAEVGVGENW 926


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 188/694 (27%), Gaps = 143/694 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 331 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI + +       + +      L   L 
Sbjct: 381 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGLD 438

Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I+        +  Y    A+     +        D 
Sbjct: 439 ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQMDDK 498

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +               E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 499 QLEM--------YEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAA 550

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 551 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 609

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  D R+  T     A  TGR +      QN+P         
Sbjct: 610 RSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 659

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 660 ---------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 704

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GED++  T A+ F T  + VS EQR   K +   L Y  G            L + 
Sbjct: 705 AFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 759

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 760 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 810

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                                I  P                 
Sbjct: 811 NANARAGAERAA---------------------------INAPM---------------Q 828

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
            TA+  + R          + +           M         +VL        E  +T 
Sbjct: 829 GTASDLIKRAMINVRNWLSDGI-GS-----KLVM-QVHDE---LVL--------EVVETE 870

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 871 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 189/701 (26%), Gaps = 156/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L + +S  D R+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F T  + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++               R LV  D+
Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDL 873

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           K                          I+Q                    +VL       
Sbjct: 874 KSKL-----------------------IMQ-------------VHDE---LVL------- 887

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +T    V   L  +M K       +PL AE    + +
Sbjct: 888 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 189/692 (27%), Gaps = 131/692 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +       + + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGLD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F+ +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++            P    L              
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 882

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E  +T   
Sbjct: 883 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 902

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 903 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 193/706 (27%), Gaps = 169/706 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A I   +++             +            + 
Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVL 413

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112
           + L  +L D +   +  +  +++ +F    GI +       T + +       P +L + 
Sbjct: 414 ARLRPWLEDASRKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L   N S    +   GK                                Y   D + T 
Sbjct: 472 ALRHVNRSGISYEDLCGKGKSQ---------------IPFAQVPVDKAAAYSCEDSDQTL 516

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++   L P            + E         I   G  ID   + +    +     KL+
Sbjct: 517 DVHNTLWPRIQVHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLE 576

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           E+  ++      +      L    F   G+ +V  +      T + +L            
Sbjct: 577 EEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 635

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   + S       + L++     DGR+        A  TGR S      QN+P     
Sbjct: 636 LLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 689

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  GK +  AD + IE R++A ++G++
Sbjct: 690 -------------------VRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDE 730

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF NG D++  T A+ F   +D+VS EQ                            
Sbjct: 731 ALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQ---------------------------- 762

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +  L         A    +   A       +  ++ G
Sbjct: 763 ----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYPG 806

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +      E                                       RRLV  ++ G 
Sbjct: 807 VKRYMDQTVELAHAQGYVETVF--------------------------GRRLVLPEINGG 840

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                       R            +Q  + D++ + M               +++ VHD
Sbjct: 841 N---GPRKKAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHD 891

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V E P+     V   + ++M         +PL AE      + K
Sbjct: 892 ELVFELPEAARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 89/696 (12%), Positives = 184/696 (26%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK + T +  V  + R   K     + Y               +
Sbjct: 744 MIDAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +          FE +   +++         E    + +      L           +
Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   ++   R Y     E  +QA                   ++L VHDE+    P
Sbjct: 870 QGSAADIIKVAMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVP 910

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +        ++   +PLKA+    + +
Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGRNW 945


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 89/696 (12%), Positives = 180/696 (25%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
             L +D ET   +P+           A +   +++  +                 + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G+ +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GVQVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L +         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLRYQTIHIDELIGPKGKNQKNMRDLAPKDVYR---------------YACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + + ++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF                  T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K     + Y               +
Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++++          FE +   +++         E    + +      L           +
Sbjct: 799 NVERKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   ++   R Y    TE  +QA                   ++L VHDE+    P
Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910

Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +        ++   +PLKA+    K +
Sbjct: 911 VEEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 115/701 (16%), Positives = 191/701 (27%), Gaps = 156/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +       + + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGLD 460

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F T  + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++               R LV  D+
Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDL 873

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           K                          I+Q                    +VL       
Sbjct: 874 KSKL-----------------------IMQ-------------VHDE---LVL------- 887

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +T    V   L  +M K       +PL AE    + +
Sbjct: 888 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/695 (14%), Positives = 187/695 (26%), Gaps = 149/695 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             L +D ET S   +           A +    +A ++          DR E     +  
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
                D +++ +  N  ++  + K   G+ +   +   T +        L  ++      
Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L       K      LI    K        D              EY   D + T +L  
Sbjct: 456 LLH----YKTIHIDELIGPRGKHQKSMRDLDPKD---------VYEYAAEDADITLQLKN 502

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              E  L  +   +   G R+D D +     +  +   +L++ I 
Sbjct: 503 VLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIY 562

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      +   LF    I +    ++     T + +L            IL+
Sbjct: 563 EKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHPIVADILD 621

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      +  L + ++   G +  +      + TGR S      QN+P        
Sbjct: 622 YRGLKKLLGTYVEALPKLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP-------- 672

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R C +         AD + IE R++A ++G++  I
Sbjct: 673 ----------------VRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G DI+  T AK ++  I  V+ E+R   K     + Y        T      +++
Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEI 771

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                       F  + +  ++    +++       + L G          R     +  
Sbjct: 772 DNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGR---------RRYLPDITS 822

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               +                                                +      
Sbjct: 823 KNGTVRGFAERNA----------------------------------------INAPIQG 842

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                 ++   R +     ENI                      ++L VHDE+       
Sbjct: 843 SEADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPD 883

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M     +   +PL A+    K +
Sbjct: 884 EKERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/720 (15%), Positives = 195/720 (27%), Gaps = 165/720 (22%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTE------------ 49
            + +D ET    P            A +      W  +   +                   
Sbjct: 401  VAVDTETSDLNPFK----------AQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAA 450

Query: 50   QSA-------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                      +   L  +L          N+ ++R++  +  G+ +     + T +    
Sbjct: 451  GEPEQLALDAVLQALAPWLASSDHPKALQNAKYDRLILLRH-GLTL-GGVVMDTLLADYL 508

Query: 103  NGL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                    L          +  L     GKA   +               +         
Sbjct: 509  RDAAAKHGLDLMAQRDYGITPTLFTDLVGKAKDGKAS-------------SFAAVPVDQA 555

Query: 160  GEYCKRDVEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVL 207
              YC  DV  TR L   L                  E  L  +   +   G RID+  + 
Sbjct: 556  ALYCAMDVHLTRRLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQ 615

Query: 208  KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262
            +L   +    ++L+ +   +  G   +      L   LF   G++            T  
Sbjct: 616  ELSAELGATLERLETEAQDVV-GTSFNLASPKQLGELLFDTLGLNRKKSRRTKTGWSTDA 674

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
            ++L           L+L     S      +  L + V +  GR+         + TGR S
Sbjct: 675  TVLEKLEGDHPVVPLLLEHRVLSKLKSTYVEALPQLVEAETGRVHTDFNQAV-TATGRLS 733

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                  QN+P                             S  +R   +   G +L+ AD 
Sbjct: 734  SSNPNLQNIP------------------------VRTEFSRRIRKAFLPQEGWQLLSADY 769

Query: 382  AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + IE R+L  ++GE+   +A+ +G+D++  T         D+VS ++R +GK +   + Y
Sbjct: 770  SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIY 827

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              GA+ F          + Q           + + +  +     +         + ++G 
Sbjct: 828  GMGAQRF-----ARETGVSQVVAKDFLAKYKQRYPKVFAFLELQERLALSRGYVETILGR 882

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                                                           L     K  + I 
Sbjct: 883  RRPFHFDR-------------------------------------NGLGRLLGKDPLEID 905

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
            L  +RR                 +Q +R            +Q  S DI+   M       
Sbjct: 906  LDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTAL 946

Query: 621  -----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                    ++L VHDE+V E       +V  L    M    +    +PL  E      + 
Sbjct: 947  QQQGLPAQLLLQVHDELVLEVEPAALDTVRQLVVQTMENAMT--LSVPLVVETGSGANWM 1004


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 119/702 (16%), Positives = 207/702 (29%), Gaps = 136/702 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52
             +  D ET + +P            A +      W              +         
Sbjct: 385 KPVAWDTETTALEP----------RDAALVGIGCCWGTGSDEAAYIPVGHKIGHNLQLDL 434

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           + S L   L +        N+ F+R++FK   GI++       T + +         +L 
Sbjct: 435 VVSALRPILENANYPKTFQNAKFDRLIFK-CQGINL-VGVVFDTMLASYLINPDTTHNLS 492

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +  L  L            K       K   D            Q +  F    K   E 
Sbjct: 493 DLSLRNLGLQLTEYNDIVTKTGKKELQKNIADIGIDIVAYYCGTQVYATFQLVDKLRCEL 552

Query: 170 --TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T +L K L+   + E+ L  +   +   G RI+   + +L + +  E  KL+    ++
Sbjct: 553 NKTPDLAKLLV---EVEQPLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEI 609

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLAKDLI 278
                 +      L   LF   G+                 TL+  L   + T     +I
Sbjct: 610 ASEKF-NLDSPKQLSYILFDKLGLSTKYSRKIQTGYSTDAATLEK-LQEVDNTGFVDAII 667

Query: 279 LNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
             R +S   +   ++ L   V     RL        A+ TGR S      QN+P      
Sbjct: 668 EYRTSSKLKST-YVDALPALVHPQSQRLHTDFNQT-ATSTGRLSSSNPNLQNIP------ 719

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                  S  +R   +  +G  +V AD + IE R+LA ++ E  
Sbjct: 720 ------------------IRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPV 761

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++A+   EDI+  T    F    D+V+ E+R   K +   + Y  G+      A   G+
Sbjct: 762 LVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGMGSLK---FARSTGV 816

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           D  + + N       E + Q  ++   ++ +       + ++G                 
Sbjct: 817 D--KANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETILGRRRYF------------ 862

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                                          L   +      I L   + L   +     
Sbjct: 863 -------------------------DFTSKSLKELKGISLEDIDLSRLKNLGAYNAGLLR 897

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIV 633
           S  N                     Q  S DI+   M    +        ++L VHDE+V
Sbjct: 898 SAANAPI------------------QGSSADIIKIAMVQLHEVLRNYQARLLLQVHDELV 939

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            E P   +  +   + S+M    S    +PL  +      + 
Sbjct: 940 FEVPPQEWGELQLQIKSVMENAMS--LSVPLVVDVRAGDNWM 979


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/695 (14%), Positives = 187/695 (26%), Gaps = 149/695 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             L +D ET S   +           A +    +A ++          DR E     +  
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
                D +++ +  N  ++  + K   G+ +   +   T +        L  ++      
Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L       K      LI    K        D              EY   D + T +L  
Sbjct: 456 LLH----YKTIHIDELIGPRGKHQKSMRDLDPKD---------VYEYAAEDADITLQLKN 502

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              E  L  +   +   G R+D D +     +  +   +L++ I 
Sbjct: 503 VLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIY 562

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      +   LF    I +    ++     T + +L            IL+
Sbjct: 563 EKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPIVADILD 621

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      +  L + ++   G +  +      + TGR S      QN+P        
Sbjct: 622 YRGLKKLLGTYVEALPKLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP-------- 672

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R C +         AD + IE R++A ++G++  I
Sbjct: 673 ----------------VRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G DI+  T AK ++  I  V+ E+R   K     + Y        T      +++
Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEI 771

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                       F  + +  ++    +++       + L G          R     +  
Sbjct: 772 DNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGR---------RRYLPDITS 822

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               +                                                +      
Sbjct: 823 KNGTVRGFAERNA----------------------------------------INAPIQG 842

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                 ++   R +     ENI                      ++L VHDE+       
Sbjct: 843 SEADIIKIAMIRIWQRFRAENI-------------------RSKMILQVHDELNFSVYPD 883

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M     +   +PL A+    K +
Sbjct: 884 EKERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 194/705 (27%), Gaps = 163/705 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----VKLWDRTEQS-------- 51
              D ET     L           A +   ++A                           
Sbjct: 350 FSFDTETDGLDTLT----------ANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLD 399

Query: 52  --AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              + + L   L D  +  +  N  F+R +  +   + +       T + +         
Sbjct: 400 LHEVLTALKPLLEDANLPKIGQNLKFDRGVLARY-DVVLEGI-VFDTMLESYVLNSVAGR 457

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             + +     L++     +   GK                      +    +   +Y   
Sbjct: 458 HDMDSLAERHLSYKTTTFEDIAGKGKKQL---------------TFNQIPLEEAAKYAAE 502

Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L + + P               E  L  +   +   G  ID   + +    I 
Sbjct: 503 DADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAEHSREIT 562

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270
               +L++    L D    +      L++ LF    +       + +  T + +L     
Sbjct: 563 VRLDELEKSAYALADEEF-NLASPKQLQVILFEKMKLPVLKKTPNGAPSTNEEVLEELAE 621

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 +IL     +       + L + V+    R+  +      + TGR S      QN
Sbjct: 622 NHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAV-TATGRLSSRDPNLQN 680

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   IA  G +++ AD + IE R++
Sbjct: 681 IP------------------------VRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIM 716

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQR   K +   L Y        
Sbjct: 717 AHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMS----- 771

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  L + +          FE +    ++    + Q  E    + L G    L +  
Sbjct: 772 AFGLSRQLGIPRGEAQRYMDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIK 831

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
            R   +      K           +G +      A++ +L M      +    P+ R   
Sbjct: 832 SRNAMRR-----KASEREAINAPMQGTA------ADIIKLAMIAVDDWIVSEKPNVR--- 877

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                          I+Q                    +V  VH
Sbjct: 878 ------------------------------MIMQ-------------VHDE---LVFEVH 891

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++        + +LM ++      +PLK +      +
Sbjct: 892 --------ESELAMAEQKIRALMEQSM--LLDVPLKVDVGIGDNW 926


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 191/701 (27%), Gaps = 164/701 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
           +  D ET              A  A +   +++             +      +  +   
Sbjct: 366 ISFDTETTGTD----------ANLAELVGLSFSVKPGAGYYIPLPPERTLAQPILDEFKV 415

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            L +E +  +  N  ++ ++ K   G++I  K    T +           ++       L
Sbjct: 416 VLENENIAKIGQNIKYDMLILKWY-GLEIKGK-LFDTMLAHYLIDPDTRHNMDVLSENYL 473

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +S        G     +                          +Y   D + T +L   
Sbjct: 474 CYSPISITKLIGPKGKNQG--------------NMRDVPVAQVVDYAAEDADVTLQLANV 519

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P+           + E  L  +   I   G RID++ ++   + +  + +K ++++  
Sbjct: 520 FRPMLKDLNAEQLATEVENPLIYVLADIESEGVRIDIETLVNYSKELETDIRKFEKNVYD 579

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNR 281
                  +      L   LF    +D     ++     T + +L            IL+ 
Sbjct: 580 KCGVEF-NLASPKQLGEVLFDRLQLDPKAKKTKTGQYQTGEDVLLALASKSDIVQDILDF 638

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     ++ L   V+   GR+  +     A  TGR S      QN+P         
Sbjct: 639 RQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP--------- 688

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR   I       L+ AD + IE R++A I+ E+  +
Sbjct: 689 ---------------IRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENML 733

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G DI+  T AK +   I++V+  QR                              
Sbjct: 734 QAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNA--------------------------- 766

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            +A +  +         +    +       +   +  ++ G+ +
Sbjct: 767 -----------------KAVNFGIIYGQSAFGLSQSLGIPRKEAAEIIDQYFTQYPGIKK 809

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              D                                    +     RR    D+      
Sbjct: 810 YMSDTMNFARENG--------------------------FVETILGRRRYLRDINSANQ- 842

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633
             T      R            +Q  + D++   M N  K          + + VHDE+V
Sbjct: 843 --TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELV 894

Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            +   T    +  + S  M      A  +P++ E  +   +
Sbjct: 895 FDVLKTEVDEMKEIISHRMKTAI--ATTVPIEIEIGQGNNW 933


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 105/718 (14%), Positives = 194/718 (27%), Gaps = 180/718 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
               D ET S  P+          QA +   + A                          
Sbjct: 337 YFSFDTETTSLDPM----------QAKLIGFSLALQPGKAAYIPLEHVAGEDDLWGDRRI 386

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
                     + L   L ++ ++ +  N  ++ ++ K+    +I  + +  T +L+    
Sbjct: 387 VQQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---NIVMRSFDDTMLLSYALE 443

Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L       K                         +      +   
Sbjct: 444 AGISTHGMDILSERWLGHKSITYKDLT---------------YNGRKVNSFAQIDLKQAT 488

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              +R L  +   + +RG  +D  ++ +L 
Sbjct: 489 LYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLS 548

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
             +AQ    L+E+I +L      +      L   LF   G+     ++     T    L 
Sbjct: 549 GELAQAALNLEEEIYQLVGEKF-NIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTLE 607

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                  +    I+N    +       + L   +    GR+         + TGR S   
Sbjct: 608 ELAAEGHILPRKIVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLAT-TSTGRLSSSE 666

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R+  IAS G  L+ AD + I
Sbjct: 667 PNLQNIP------------------------VRTAEGRKIRTAFIASKGYLLLSADYSQI 702

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA  A      +AFA G+DI+  T A+ F   ++ +S E R   K +         
Sbjct: 703 ELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINF------- 755

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+     +                                  +      
Sbjct: 756 -------GIIYGISPFGLANQ------------------------------LGISRKEAS 778

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
              + +  +  G+    +                                          
Sbjct: 779 HYIQLYFERFPGIKDYMEKTKMFARHHGYVETIF-------------------------- 812

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RR+   ++K          +   R            +Q  + DI+   M          
Sbjct: 813 GRRIHCPEIKAVNP---QVRAFNERAAINAP------IQGSAADIIRRAMIQMENALEKE 863

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
           K    ++L VHDE++ E P +       L   +M     P+ +  +PL+ +   A+ +
Sbjct: 864 KLSAKMLLQVHDELIFEVPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNW 921


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 102/699 (14%), Positives = 191/699 (27%), Gaps = 155/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A                          +
Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQV 402

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L DE ++ +  N  F++ + ++   ID+    +  T + +           + 
Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 461 SLAERYLKHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L                    L  +   I   G  ID  ++ +  + +     
Sbjct: 506 TLHLHQTLWGKLQPHADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLA 565

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274
            L+    +L      +   T  L+  L+    + +       +  T + +L+   +    
Sbjct: 566 GLETQAYELAGEEF-NLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             LIL     +       + L   ++   +   T      + TGR S      QN+P   
Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IAS G  +V AD + IE R++A ++G
Sbjct: 682 ---------------------VRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSG 720

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFANG DI+  T ++ F   +DKV+ EQR   K +   L Y             
Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L++ +          FE +   + +    + Q  E      L G    L         
Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +G                A++ +  M      +    P           
Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTA--ADIIKKAMISIDDWLQKDTP----------- 873

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                                 L + I+Q                    +V  +HD ++ 
Sbjct: 874 ----------------------LVKMIMQ-------------VHDE---LVFEIHDSVI- 894

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   S+  +  LM         +PL+ +      +
Sbjct: 895 ------EESISKIKILMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 195/702 (27%), Gaps = 164/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
           +   D ET   +P            A +   A+++               E   +  +  
Sbjct: 364 EFCFDTETTDLEPT----------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEFK 413

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
           + L +E +  +  N  ++  + +   G+ +  K +  T +           ++       
Sbjct: 414 EVLENEDITKIGQNLKYDIQVMRNY-GVRVQGKMF-DTMLAHYLLDPETRHNMDVMAENY 471

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN+S        GK  + +                      +   EY   D + T +L  
Sbjct: 472 LNYSPVSITDLIGKKGVKQG--------------NMRDVPVEDVVEYAGEDADITLQLKH 517

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L                E  L  +   +   G +ID D + K+ + +     +  E I 
Sbjct: 518 ILEKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIF 577

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +L      +      L   LF    + D    ++     T + ILS         D IL 
Sbjct: 578 ELAGQEF-NIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILE 636

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L + +S  DGR+    +   A  TGR S      QN+P        
Sbjct: 637 FREYQKLKSTYVDALPKLISKKDGRVHTDYRQAVA-ATGRLSSNNPNLQNIP-------- 687

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +      +L+ AD + IE R++A  + ++  
Sbjct: 688 ----------------IRTEKGRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAM 731

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF NG DI+ TT AK F   +D V    R   K +                    G+ 
Sbjct: 732 MEAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNF--------------GIIYGIS 777

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A    +  T    + KA+  +   V 
Sbjct: 778 ------------------------------AFGLAQNLNISRTEASDIIKAYFKEFPRVH 807

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              + + E           +                           R+    D+     
Sbjct: 808 DYMEKVKEDARANEYVTTIL--------------------------GRKRWLRDINSRNQ 841

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEI 632
            +     +               +Q  + D++   M N  K          +++ VHDE+
Sbjct: 842 TIRGYAERN---------AINAPIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDEL 892

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + +        +   +  LM         +P++     A  +
Sbjct: 893 IFDAHKDEIDKLKDKVVDLMKNAME--LDVPMEIGVGIADNW 932


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 102/646 (15%), Positives = 195/646 (30%), Gaps = 154/646 (23%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
           L   L DE+   V  N  ++  +  +  G+++   R   T + +           + +  
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L  S    +   GK                      +  A +   +Y   D + T  
Sbjct: 59  LRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADVTLR 103

Query: 173 LFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           L +R+ PL +            E  L  +   I   G  ID  L+    + IA    +L+
Sbjct: 104 LHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLE 163

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277
           ++  +L      +      L+  LF    +         +  T + +L    +      +
Sbjct: 164 QNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKV 222

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++     +       + L + ++   GR+  +      + TGR S      QN+P     
Sbjct: 223 LIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP----- 276

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R   +A +G K++  D + IE R++A ++G+ 
Sbjct: 277 -------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQ 317

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF +G+DI+  T A+    PID+VS EQR   K +                    G
Sbjct: 318 ALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYG 363

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +                                   A +  +     +     +  ++ G
Sbjct: 364 MS------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPG 393

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V+Q  +D     A +                                  RRL       +
Sbjct: 394 VMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP----E 423

Query: 577 CSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLTV 628
            +  N    +   R            +Q  + DI+ + M    +           +++ V
Sbjct: 424 ITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQV 477

Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 478 HDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 521


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 91/686 (13%), Positives = 183/686 (26%), Gaps = 131/686 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 +  + 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +   D  P D        A          + E     
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKEND 541

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +RL    D E  L  +   I   G  +D + + +       + ++++++I +L  G   
Sbjct: 542 AERLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA-GETF 598

Query: 234 SSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF    I +    ++     T + +L          + IL         
Sbjct: 599 NIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLL 658

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   GR+  +      + TGR S      QN+P                
Sbjct: 659 GTYIDALPLLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 701

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I   G     AD + IE R++A ++ +   I AF +  D
Sbjct: 702 --------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHD 753

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   +  V  + R   K     + Y               +++ +      
Sbjct: 754 IHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 808

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE +   +++         E    + +      L           +      +   
Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDINSRNAVVRGY 859

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            ++
Sbjct: 860 AERNA----------------------------------------INAPIQGSAADIIKV 879

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y     E  +QA                   ++L VHDE+    P      V  +
Sbjct: 880 AMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVPVNEKERVEEI 920

Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++   +PLKA+    K +
Sbjct: 921 VIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 194/700 (27%), Gaps = 162/700 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAMPSDLLQY 60
           +   D ET     +             I   + A             +  +   + +   
Sbjct: 389 EFCFDTETTG-FDIF---------NDRIVGLSLAVRPYEAWYIPFNESNTAEYAALIRPL 438

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALN 117
             D  +  +  N  F+ ++  + LG++I   R   T +L          ++       LN
Sbjct: 439 FADGKIAKIGQNIKFDLMVLAR-LGVEIRG-RLYDTMILHYLLDPESRHNMDALAMRYLN 496

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +         GK                       + + +   EY   D + T  L + L
Sbjct: 497 YRPISITSLIGKG---------------ARQLTMDMISLERVAEYAAEDADVTLRLKQVL 541

Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P            + E  +  +   I   G RID + + +    + +    L+ DI +L
Sbjct: 542 WPKVEELDLAGLYLEIEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRL 601

Query: 228 TDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRL 282
            D    +      L   LF    I +   M++     T +  L          D IL   
Sbjct: 602 ADEPSLNVNSARQLGEVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEYR 661

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                    +  L   V+   G++  +      + TGR S      QN+P          
Sbjct: 662 GVKKLLSTYVEALPLLVNPVTGKIHTSFNQAV-TATGRLSSTNPNLQNIP---------- 710

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I S+    L+ AD + +E R++A ++G++  I 
Sbjct: 711 --------------VRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIA 756

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GED++  T A+ F   + +V  ++R   K                      G+   
Sbjct: 757 AFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTAN--------------FGIIYGISAF 802

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             SQ +                               +     + + + + A +  V + 
Sbjct: 803 GLSQRLD------------------------------IPRKEAKEIIEGYFASYPKVKEY 832

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              + E                                       RR   +D+    +  
Sbjct: 833 MDRVVEEAKRDGYVSTIF--------------------------GRRRYLNDIASRNAVA 866

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                +               +Q  + DI+   M   ++          ++L VHDE+V 
Sbjct: 867 RGLAERN---------AVNAPIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVV 917

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +    V  +    M      A  + L  +      +
Sbjct: 918 DMLRSEQERVIAIVTEAMESAA--ALRVRLVVDCGVGDNW 955


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 111/692 (16%), Positives = 206/692 (29%), Gaps = 144/692 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDLL 58
           ++ +D ET S              +A +   + + +    +            +    L 
Sbjct: 372 RIAVDTETTSLNTF----------EAELAGISISTEARKARFIALANSSLNPQSALELLR 421

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115
             L +  +     N  ++ ++ KK  GID+    +  T + +         +L +     
Sbjct: 422 PLLENPELPKTGQNLKYDILVLKKY-GIDLTPVGF-DTMLASYVLDPEEKHNLDDLAARH 479

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +     +   G                 D    +   A Q   E  ++ +E  +EL  
Sbjct: 480 LGYKTTTFEELTGTGKAKLHIFDVEPEQLSDYACQDADLALQ-LEEIFRKKLEGEKEL-- 536

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L      E  L  +   +   G  ID   + K  E + +E + L E I   +     + 
Sbjct: 537 -LWLCEHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYAASGAPF-NI 594

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF + G+     ++    T   +L            +L            +
Sbjct: 595 DSPKQLSNILFNVLGLPTKKSTKTGFSTNVEVLEELAELHPVVASLLEYRTLQKLKTTYI 654

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + V+   GRL  +   +  + TGR S      QN+P                    
Sbjct: 655 DALPKIVNPLTGRLHTSFNQF-ITATGRLSSSNPNLQNIP-------------------- 693

Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   I S   K L+ AD + IE R+ A I+G+   I+AF N EDI+ 
Sbjct: 694 ----IRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRNREDIHT 749

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T    F    D+++ + R   K +   + Y               L+            
Sbjct: 750 ATARVIFG--SDEITPDMRRKAKEVNFGVLY-----GIMPFGLSKRLN------------ 790

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                      +  +    +   ++AK+ G+             
Sbjct: 791 ---------------------------IPRSEAIAIIDTYKAKYPGL------------- 810

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                            + ++   K+D ++     RR   +D+    S +        R 
Sbjct: 811 -------------FLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNI---QKAAERA 854

Query: 591 RTYGGKLTENIVQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+   M        KN     ++L VHDE++ ET D     +
Sbjct: 855 AM------NTPIQGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPL 908

Query: 645 GTLCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673
             L    M         K +P++ +    K +
Sbjct: 909 ADLIEEAMIDAAIICGLKNVPVEVDTGIGKNW 940


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 196/696 (28%), Gaps = 149/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
             ID+ET S  P              I   + ++  +         +         +   
Sbjct: 320 FAIDLETSSLDPF----------DCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L + L D     V  N  F+  +     G++ P      T + A          +L +  
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA 427

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L +     +     +    F    +D P       +   A   +  Y    ++    
Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFVDVPLEKAANYSCEDADITYRLYKTLSLKLHEA 486

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L      +   E  L  +   +   G  +D + + KL E   ++ ++L E+I ++    
Sbjct: 487 DLENVFYKI---EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543

Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      +   LF   GI             T   +L           LIL       
Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + V+   GR+  +    G + TGR S      QNLP              
Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  I+       +V AD + IE R+LA ++G++  ++AF  
Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEE 697

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ FN   ++V++E R               A      +   G+     S 
Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                        V+  +     E +   +   +  V    + +
Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                    R+     +           
Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
           ++  R            +Q  + DI+   M          K    +++ VHDE+V E PD
Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPD 858

Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               + V  +   M         +PL+ +    K +
Sbjct: 859 EEKDALVELVKDRMMNVVK--LSVPLEVDVTIGKTW 892


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/704 (16%), Positives = 204/704 (28%), Gaps = 164/704 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------QSAMP 54
               ID ET S  P            A +   + + ++        +        +  + 
Sbjct: 318 KTFSIDTETTSLDPF----------SAKLVGVSISTNEGEAYYIPISHVSENNLTKEIVL 367

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111
             L + L  E    V  N  F+  +F    GI+ P      T V A          +L+ 
Sbjct: 368 KFLKEILECERYNIVGQNLKFDYKVFM-VNGIE-PQIPHFDTMVAAYLINPEERRYNLEE 425

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +      +                       + +   EY   DV+ T
Sbjct: 426 LALKYLGYKMISFEELVDNNMPLFGN-------------DFSFISIEKAAEYSCEDVDIT 472

Query: 171 RELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L+  L              E  L  +   +   G   D+D + +L +   +E KKL+E
Sbjct: 473 FRLYSYLSKYIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEE 532

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278
            I +++ G   +   +  +   LF    + +V  +      T   +L           LI
Sbjct: 533 KIFEIS-GEQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEVLEELAKDYEIARLI 591

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++++  +V+    R+  +    G + TGR S      QNLP      
Sbjct: 592 LEYRKFQKLKSTYVDSIPSSVNITTNRVHSSFHQTG-TSTGRLSSSAPNLQNLP------ 644

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     +R  +        +V AD + IE RVLA ++ ++
Sbjct: 645 ------------------TRSEEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDE 686

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF N  DI+  T +K FN     V+++ R IGK++  A+ Y              G
Sbjct: 687 KLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISP---------YG 737

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L                                     +  L     + +   +   +QG
Sbjct: 738 LS-----------------------------------RRIGLNVNETKKIIDNYFKYYQG 762

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +  K   +                                 +     R+     +K  
Sbjct: 763 VFEFIKKTIDFAKKNG--------------------------FVKTLFGRKRFIPQLKLK 796

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
              L     +  R            VQ  + DI+   M               ++L VHD
Sbjct: 797 NKNL---IQEGERIAI------NTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHD 847

Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E P      V  +    M         +PLK + YE + +
Sbjct: 848 ELVFEVPFDELQIVKEIIKDKMENAVK--LKVPLKVDLYEGREW 889


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----L 57
            ++  D ET S   +          +A I   A++W+          E  ++  +    L
Sbjct: 358 KEVCFDTETTSLDEM----------EAQIVGLAFSWEVHKGYYILFPEDFSLAKEWLSLL 407

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +   E ++ +  N  ++  +      I++   +   T +           ++      
Sbjct: 408 KPFFEAENILKIGQNLKYDLKILANY-DIEVRG-QLFDTMIAHYLLNPDMRHNMDLLAEA 465

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L+++    +   GK    +                      +L  EY   D + T +L 
Sbjct: 466 YLSYAPVAIETLIGKKGKGQLS--------------MCSVPAELQKEYAVEDTDVTLQLK 511

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +PL +           E  L  +   +   G  +D   + +L + I  +   L   I
Sbjct: 512 HTFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAI 571

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQLAKDLIL 279
            +   G   +      L   LF    +             T + +LS           +L
Sbjct: 572 FEQA-GESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVL 630

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              A         + L   V+   GR+  T      + TGR S      QN+P       
Sbjct: 631 EFRALQKLQSTYTDALPREVNPRTGRIHTTFMQAV-TATGRLSSNQPNLQNIP------- 682

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +       L+ AD + IE R++A ++ E  
Sbjct: 683 -----------------IRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETH 725

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G+DI+ +T AK F  P++ V+KEQR+  K +   +                  
Sbjct: 726 MIEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGII----------------- 768

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              + +  L  +  + +   +   +  +
Sbjct: 769 ---------------------------YGVSAIGLSQQTSLSRSQSKELIDTYYQTYPKL 801

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +               +                           RR    D+    
Sbjct: 802 KTYIEQQIFFAREHGYVQTLL--------------------------GRRRYLPDIHSRN 835

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
             +  A  +               +Q  + DI+   M          K    ++L VHDE
Sbjct: 836 QVVRGAAERN---------AVNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDE 886

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ + P      V  L    M     +A  +PL  E      +
Sbjct: 887 LLFDVPKRELEVVTPLIREEMGHA--YALSVPLIVEIGTGNNW 927


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 188/701 (26%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D+ET S   L           A I   A+A                         A+
Sbjct: 352 FAFDLETDSLDTL----------SANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRAAV 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D     V  N  ++R + K    I++   ++  T + +           + 
Sbjct: 402 LKQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKF-DTMLESYCLNSVGGKHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     LN      +   GK                      +  A +    Y   D + 
Sbjct: 460 SLAARWLNHKTVTFEEIAGKGKYQL---------------TFNQIALEQAAHYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P  + E             L  +   +   G  ID +++ K  + +     
Sbjct: 505 TLQLHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   +L      +   T  L+  LF    I     +      T + +L+   +    
Sbjct: 565 ELEQKAHELAGEPF-NLSSTKQLQTILFEKQEIKPTKKTPGGAPSTSEKVLAELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEHRGLSKLKSTYTDKLPQMINPITGRVHTSYHQAV-TATGRLSSNDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA   K++V AD + IE R++A ++
Sbjct: 681 ----------------------VRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA GEDI+  T ++ F   + KVS EQR   K +   L Y            
Sbjct: 719 QDKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++            FE +     +    + Q  +    + L G    L        
Sbjct: 774 SRQLNIGAGEAKKYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                                               
Sbjct: 826 -PDINSSNAIRRKAAERAAINAPMQGTA-------------------------------- 852

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                       +       G  L +N       D +   M         +V  +H    
Sbjct: 853 --------ADIIKRAMIAVDGWLLQQN------SDEVKMIM-QVHDE---LVFEIH---- 890

Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         +  LM  +      +PL+ E      +
Sbjct: 891 ----KDAVAGASQTIRELMENSMK--LDVPLQVEVGTGDNW 925


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 183/701 (26%), Gaps = 149/701 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 352 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                         A +   EY  +D + 
Sbjct: 460 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 504

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 505 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 565 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 624 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 681 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  G         
Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 774 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++            P    L     
Sbjct: 826 -PDIHNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS--- 881

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                   M         +VL       
Sbjct: 882 -------------------------------------KLIM-QVHDE---LVL------- 893

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +T    V   L  +M K       +PL AE    + +
Sbjct: 894 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 933


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 108/703 (15%), Positives = 189/703 (26%), Gaps = 139/703 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSAMPS--- 55
            ++  +D ET S  PL           A +    +   +E   +     + QS       
Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEEINDLFYIPLSHQSQKKEMNQ 429

Query: 56  --------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-- 105
                   +L  ++          N  F+R +F    G+++    +  T +         
Sbjct: 430 LAIEDVFFNLRSWIESPEKEKTLQNCKFDRQIFYNH-GLNLRGVTF-DTLLADYILNNQE 487

Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              L         F     K   GK       K        D +          F     
Sbjct: 488 KHGLSEISFREFGFKPPTFKETVGKN------KDFSFVDINDASTYCGYDVLLTFKIAKI 541

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                  E         + E  L  +   +   G RID   + +L   +    + ++E++
Sbjct: 542 FKERFNNENKDLTKLFKEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENV 601

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLIL 279
            ++      +      L   LF    +D            T   +L            ++
Sbjct: 602 FEIAKQEF-NLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPFLI 660

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                S      ++ L   +S   GR+        A+ TGR S      QN+P       
Sbjct: 661 KHRTLSKLLSTYIDALPNLISEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP------- 712

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                 S  +R   +   G KL+ AD + IE R+LA +A E+  
Sbjct: 713 -----------------VRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEIL 755

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I AF   +DI+  T    F    + ++ ++R +GK +   + Y  G    K  A   G+ 
Sbjct: 756 INAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMG---IKKFARSTGVS 810

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                         E + +      + +         + + G   E              
Sbjct: 811 TT--EAKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKFDK--------- 859

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                                         L     K    I L ++R+           
Sbjct: 860 ----------------------------NGLGRLIGKDPYEIDLQTARKA---------- 881

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEI 632
                 +Q +R            +Q  S DI+   M    K          ++L VHDE+
Sbjct: 882 ---GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDEL 932

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
           + E           L    M         +PL  +      + 
Sbjct: 933 LFEVQPDFLEITKDLVKETMEDCVK--LNVPLLVDIGVGNNWM 973


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 108/712 (15%), Positives = 192/712 (26%), Gaps = 175/712 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
              D ET S  P          E   +   +++ +++                   +  +
Sbjct: 358 FAFDTETTSLHP----------EDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQLAKDDV 407

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
            + L     D  +  + HN  F+ ++     G+      +  T ++A       S  L N
Sbjct: 408 FAKLAPVFADPKIKKIGHNVKFDLLVL-YFAGLSAVKGVYADTMLMAHLLDSVQSCALDN 466

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L++         G    +                        +   Y   D E  
Sbjct: 467 LAEKYLSYKTIKYSDVAGSGSKS---------------VTFDNVPVDIACAYSGEDSEVA 511

Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             LF  L+P    E                +   +   G  +  D + +  E++  E + 
Sbjct: 512 LRLFNVLLPKIKDEGKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQA 571

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---------SEGTLKSILSHSNI 270
           + +DI         +      L   LF    I                 T + +L+    
Sbjct: 572 VQKDIYAAAGQEF-NIASPKQLGNVLFESLAIPYPKKVKVDKNGNKQYSTAEDVLTEIAP 630

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                +L+L   + S         L   +S   GR+  +    G + TGR S      QN
Sbjct: 631 MYDIANLVLRFRSVSKLIGTYTEKLPLLISKRTGRIHTSFNQAG-TTTGRLSSSDPNLQN 689

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R   IA  G  LV AD + IE R++
Sbjct: 690 IP------------------------ARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLI 725

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A IA +   IKAF  G DI+  T A+     I++V+ E+R+  K     L          
Sbjct: 726 AHIAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLM--------- 776

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G+     S                                  L   A +     
Sbjct: 777 -----YGMGAHGLSAQ------------------------------TGLSFKAAKAYIDC 801

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +  ++  +      + +           +                           RR+ 
Sbjct: 802 YFTRYPKIRDYMDSIKKFAHEHGYVETIL--------------------------GRRID 835

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGY 622
           +  +         A +   R            +Q  + DI+   M    K       +  
Sbjct: 836 FPGINSTN---RIAVTGAERAAINAP------MQGSAADIIKIAMIAIEKWITSLPADTV 886

Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE+V E  +         +  LM    +    +PL A     + +
Sbjct: 887 RMILQVHDELVFEVKNEFLDEATAKIKELMENAVT--LDVPLLAGIGIGQNW 936


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 190/694 (27%), Gaps = 151/694 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----PSDLLQ 59
              D ET S   L           A I       +          E   +       L  
Sbjct: 356 FSFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRP 405

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
              D  +  V  N  ++  +  +  GI++   +   T +        L  ++       L
Sbjct: 406 LFADTAIGKVGQNMKYDIQVLSRY-GIEVRG-QLFDTMIAHYLLFPDLRHNMDEMAETLL 463

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +         G        +                   Q   +Y   D + T +L++R
Sbjct: 464 GYRTIHYSDLVGSDKQEVHIR---------------QVPLQNLADYAMEDADITWQLYER 508

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L  +             E  L  +   +   G ++D +++ +    + +E ++++++I +
Sbjct: 509 LNAMLSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYR 568

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
           L  G   +      +   LF    I +    ++     T + IL           LIL+ 
Sbjct: 569 LA-GHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDY 627

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     +  L E    DG+L  +     A+ TGR S      QN+P          
Sbjct: 628 RGIKKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP---------- 676

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R+  +   +    + AD + IE R++A ++ ++  I+
Sbjct: 677 --------------IRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQ 722

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GEDI+  T +K +  P+ +V+ + R   K     + Y               L++ 
Sbjct: 723 AFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYG-----ISAFGLSERLNIS 777

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +          F  +   +++      +         L G    L         + +   
Sbjct: 778 RTEAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFL---------RDINSA 828

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +               +                          +L    +  + +  
Sbjct: 829 NAVVRGYAERNAINAPIQGSAADLI---------------------KLAMIRIHEEITER 867

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                                 K    ++L VHDE+        
Sbjct: 868 --------------------------------------KLRSRMILQVHDELNFNVLRPE 889

Query: 641 YFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  L    M      +  +PL AE  E   +
Sbjct: 890 AAEVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 103/694 (14%), Positives = 182/694 (26%), Gaps = 158/694 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           + +D ET S  PL           A +   +   +D          +             
Sbjct: 315 VAVDTETDSLDPLK----------ARLVGVSLCTEDGEAWYLPCGHRDEAGELVAGQLPL 364

Query: 53  --MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGL---P 106
             +   L   L       + HN  F+  +        I        T + A         
Sbjct: 365 DRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAWLLAPDRRT 424

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             L + C  +N      +                         A      +    Y   D
Sbjct: 425 YKLDDLCGEINLRMTSYEEVTHAD---------------KSEDAFCRVPLEAAKNYSCED 469

Query: 167 VEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           V     L++  +P  +           E  L  +   +   G R+D D + +L     + 
Sbjct: 470 VYGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRR 529

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
            +  +  I +   G+  +      L   LF    +     ++    T   +L + +    
Sbjct: 530 LRTDELSIYQAA-GMSFNINSPKQLGEVLFEKLQLPKGRKTKTGWSTDVKVLENLSFDHE 588

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL     +      ++ L+   +   GR+  +    G + TGR S      QN+P 
Sbjct: 589 LPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCG-TATGRLSSSSPNLQNIP- 646

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +RS  IA++G  L+ AD + I+ RVLA  
Sbjct: 647 -----------------------IRTEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHY 683

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I AF  G+DI+  T A+ FN   + V+ E R + K +   + Y        +  
Sbjct: 684 SQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMS-----SFG 738

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +    +     F  +   +        Q  +      L+G    L       
Sbjct: 739 LSSQLHVSRKDAQLFIDRYFAHFSGIKDFMASTIQQAKKDGFVTTLLGRRRPLA------ 792

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    +   E                                        +L    
Sbjct: 793 ---EINSANRVQREFAERTAINTPIQGTAADII---------------------KLAMLR 828

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +  +    +                                M           L +HDE+
Sbjct: 829 IHRELLRRDFRAR----------------------------ML----------LQIHDEL 850

Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
           V E P+T    V   L   M         +PL  
Sbjct: 851 VLEVPETELDPVSRLLKDSMESAMP--LRVPLVV 882


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 193/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET     L           A +   ++A +                        +
Sbjct: 356 FAFDTETDGLDTLT----------ANLIGLSFAIEPGVAAYLPVAHDYLDAPVQLDRAYV 405

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  F++ L  +   ID+    +  T + +           + 
Sbjct: 406 LETLKPLLEDEKALKVGQNLKFDKSLLARY-DIDLRGIAY-DTMLESYVLDSVSGRHDMD 463

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L+      +   GK                      +  A +    Y   D + 
Sbjct: 464 SLSDRYLDHKTITFEEIAGKGKNQL---------------TFNQIALEQAAPYAAEDADV 508

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L   + P             + E  L  +   I   G  ID  ++    + +++   
Sbjct: 509 TLQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLIDQHILAAHSKELSKRLG 568

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L+    +L +    +   T  L+  L+    + ++  +      T + +L+   +    
Sbjct: 569 ELEIQAHELAEEPF-NLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPL 627

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 628 PKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 684

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G ++V AD + IE R++A ++
Sbjct: 685 ----------------------VRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLS 722

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T  + F  P+DKV+ EQR   K +   L Y            
Sbjct: 723 QDRGLLNAFAAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMS-----AFGL 777

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          FE +     +    + Q  E      L G    L        
Sbjct: 778 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQASEQGYVSTLDGRRLYL-------- 829

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              V        +                   + R ++           P          
Sbjct: 830 -PDVRSSNGMRRKAAERAAINAPMQGTAADI-IKRAMIAVDAWLQGQQQP---------- 877

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                  L   I+Q                    +V  VH    
Sbjct: 878 -----------------------LVRMIMQ-------------VHDE---LVFEVH---- 894

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++        + SLM  +   A  +PLK +    K +
Sbjct: 895 ----ESAMDDACLRIRSLMEGSMELA--VPLKVDIGVGKNW 929


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 193/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           + ID ET S   +          +A +   ++A +                       + 
Sbjct: 341 IAIDTETTSLNYM----------EAELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASA 390

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L  +T   V  N  ++  +     GI +   R+  T + +           + 
Sbjct: 391 LEKLRPILEGDTPQKVGQNLKYDMSILANA-GISLKGIRF-DTMLESYVFNSIASRHDMD 448

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                      +     + G Y   D + 
Sbjct: 449 GLALKYLGHKNISFEEVAGKGAKQL---------------TFNQVHLDIAGPYAAEDADI 493

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L + L P  + E             L  +   +  +G  ID  L+ +    +A++  
Sbjct: 494 TLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLD 553

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
            L+    ++ +    +      L+   F   G  +   +      T + +L    +    
Sbjct: 554 DLENKAYEIAEEKF-NLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAEDVLIELALDYPL 612

Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L   V+ + GR+  +     A  TGR S      QN+P  
Sbjct: 613 PKVILEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 669

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA  G+K++ AD + IE R++A ++
Sbjct: 670 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 707

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F    ++V+ EQR   K +   L Y            
Sbjct: 708 QDAGLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMS-----AFGL 762

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              LD+ +        + F  +     +    +    E      L G    L        
Sbjct: 763 AKQLDIPRNEAQKYIDTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYL-------- 814

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +                      ++                       
Sbjct: 815 -PEINDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 850

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                    A  Q + + T G      I+Q                    +V  V DE  
Sbjct: 851 ---------AIHQWINQDTQGEITL--IMQ-------------VHDE---LVFEV-DE-- 880

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++   +C LM +  S    + L AE      +
Sbjct: 881 -----AQAETLKTKVCDLMAQAAS--LDVTLLAEAGIGDNW 914


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 185/709 (26%), Gaps = 162/709 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
            +  D ET +               A +   + A                          
Sbjct: 385 IVAFDTETDALSSAT----------AGLCGVSLAISPGEACYIPVGHCEKDGLALEAAAD 434

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   + + L   L D  V+ +A N+ ++  +  +     I       T +++    
Sbjct: 435 LVQVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY---GINVGPIEDTMLISYVLE 491

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  +       L       K   G  K  I+    G  ++  Y    A+       
Sbjct: 492 AGLHGHGMDELSELWLGHKPISFKQVAGSGKGQISFKHVGLAEATAYAAEDADV-----T 546

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              Y        RE    +      ER L  +   + + G R+D D + +L    +    
Sbjct: 547 LRLYNVLKPRLAREGLLTVYETL--ERPLPAVLAAMENDGIRVDPDTLRRLSNEFSMRMA 604

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSILSHSNITQLA 274
             +    +L      +      +   LF    L  G         T   +L    +    
Sbjct: 605 DFEARAQELVGRPF-NLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALALEHEL 663

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQ 333
             ++L+    S         L  A++  G  R    +   A+ TGR S      QN+P  
Sbjct: 664 PRVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNLQNIP-- 721

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A+ GK L+ AD + IE R+LA I 
Sbjct: 722 ----------------------IRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIG 759

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                 KAF  G DI+  T ++ FN PI+ +  E R   K +                  
Sbjct: 760 DIPQLKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINF--------------GI 805

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+                                   A +  +         K +  +
Sbjct: 806 VYGIS------------------------------AFGLANQLSIPQGEAGAYIKTYFER 835

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             G+    +                                           R++   D+
Sbjct: 836 FPGIQAYMEATKAFVREHGYVTTIF--------------------------GRKINIPDI 869

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG--YDIVLT 627
            G             R            +Q  + D++   M          G    ++L 
Sbjct: 870 GGKSVAHRQFA---ERAAINAP------IQGAAADVMRRAMVRMPGALKAAGLSSRMLLQ 920

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLM--TKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+    +   +   +M     P+    +PL  E   A  +
Sbjct: 921 VHDELVFEAPEAEAQATIDVAREVMQGAAAPAVTISVPLTVEARAAANW 969


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 109/693 (15%), Positives = 189/693 (27%), Gaps = 139/693 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
           + + ID ET S            A  A +   + A+                        
Sbjct: 352 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSL 109
            +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L       +   GK                +    +   A +L      +  E
Sbjct: 460 DELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDE 519

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E+++++      E  +  +   +   G +ID   + +    +  E  KL++      
Sbjct: 520 KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAA 573

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRL 282
           D    +      L+  LF   GI        ++    T +++L           +IL   
Sbjct: 574 DQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNR 632

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           + +       + L E +S  DGR+  T     A  TGR +      QN+P          
Sbjct: 633 SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP---------- 681

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 VR    A  G  +V AD + IE R++A ++G+   I A
Sbjct: 682 --------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +  
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDN 782

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            S        F  +     +    ++Q       + L G    L           +    
Sbjct: 783 LSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKN 833

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +   G                     ++  R+     I                     
Sbjct: 834 ANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI--------------------- 872

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
                                           M         +VL        E  +T  
Sbjct: 873 ----------------------GS-----KLVM-QVHDE---LVL--------EVVETEL 893

Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             V   L  +M K       +PL AE    + +
Sbjct: 894 DFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 114/711 (16%), Positives = 204/711 (28%), Gaps = 174/711 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52
             +  D ET S +P            A +      W  E   +                 
Sbjct: 382 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 431

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           +   L   L  E       N+ F+R++  ++ GI +       T + +         +L 
Sbjct: 432 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGV-VFDTMLASYIINPESSHNLT 489

Query: 111 NACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +  L     L            K                   +            YC  D
Sbjct: 490 DLSLRYLPDLGIVAQSYSQLVPKG------------------KTIADLDINTVANYCGLD 531

Query: 167 VEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           V  T ++ +++  +              E+ L  +   +  +G RID D + +L + + +
Sbjct: 532 VFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGE 591

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270
               L++   +   G + +      L   LF    +D            T  ++L     
Sbjct: 592 TLDNLEKTSHQAA-GEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKH 650

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
                + IL     S      ++ L E V SD GR+         + TGR S      QN
Sbjct: 651 DHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQA-ITSTGRLSSSHPNLQN 709

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                             S  +R   I  +G  LV AD + IE R+L
Sbjct: 710 IP------------------------IRTEFSRQIRKAFIPESGWLLVSADYSQIELRIL 745

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ E   I+A+   +D++  T    F    D ++ E+R +                  
Sbjct: 746 AHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRL--------------GKII 789

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G+                                  FA +  +  TA +     
Sbjct: 790 NFGVIYGMG------------------------------AQRFAREVGVSATAGKQFIDR 819

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           + +++ GV +  +               +                           RR  
Sbjct: 820 FNSQYPGVFEYLESQKLAAINQGYVETIL--------------------------GRRRY 853

Query: 570 YSDVKG-DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624
           +  +KG D   LN    Q++R            +Q  S DI+   M    +        +
Sbjct: 854 FEGLKGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARL 907

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +L VHDE+V E P + +  +   + S M         +PL  + +    + 
Sbjct: 908 LLQVHDELVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 956


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 192/699 (27%), Gaps = 152/699 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           L ID ET S QP            A I   ++ + D                       +
Sbjct: 383 LVIDTETTSVQP----------RWAEIVGYSFCYRDGEAWYLPIRAPENEQALCLDATAV 432

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
                  L D  +  V  N  ++ ++  ++ GI++    +  T V            +L 
Sbjct: 433 ADLFRPVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAAF-DTMVADYLIDPGERSHNLD 490

Query: 111 NACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRD 166
                 L       +     GK  I            Y    A    +   +     ++D
Sbjct: 491 ELARRHLGHQNIEIESLIGTGKKQIRMDQVPLAAITDYAAEDALVPYRLLPILEPRLEQD 550

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                          D E  L  +   +  RG ++D   +++L    + +   L+ +I  
Sbjct: 551 GLVPL--------FRDLEMPLVEVLAELEHRGIKVDRARLVELSTDFSTKITALENEIYA 602

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---LKSILSHSNITQLAKDLILNRLA 283
           +  G   +      L   LF    + ++  ++        +L            +L    
Sbjct: 603 INHGEF-NIDSRLQLAKLLFEDLKLPILKKTKTGPSMDAEVLEDLARLHELPKKVLEYRH 661

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +      +++L E +    GR+  +L+   A  TGR S      QN+P           
Sbjct: 662 LAKLRSTYVDSLQELIHPVTGRVHTSLKQDVA-ATGRLSSQDPNLQNIP----------- 709

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +RS       G KL+ AD + IE RVLA  +G+    +A
Sbjct: 710 -------------VRTAEGRAIRSAFQPGIEGWKLMAADYSQIELRVLAHFSGDAALAEA 756

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           FA+  DI+    ++ +      V+ E R                                
Sbjct: 757 FASDRDIHTQVASQVYEVAPGDVTPEMRRSA----------------------------- 787

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                          +A +  +         A    +          A+ A++ GV    
Sbjct: 788 ---------------KAINFGVIYGQSPFGLARSLGIENDEAAAFISAYFAQYPGVDDFM 832

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           ++   G             RR     R     + +         R+              
Sbjct: 833 RETLIGCRKQGYVTTIAGRRRPVTGVRDPHAVNDK---------RQRTLP---------- 873

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
                  R           ++Q  + DI+   M    +          ++L +HDE++ E
Sbjct: 874 ------ERIAI------NTVIQGSAADIIKRAMITVHRRLKEEKLQARMLLQIHDELLFE 921

Query: 636 TPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P      +  L    M+        +PLK +      +
Sbjct: 922 FPPEEQGQLRDLVVESMSTAEK--ISVPLKIDVKTGLNW 958


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 92/698 (13%), Positives = 187/698 (26%), Gaps = 152/698 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSD 56
           +     D ET S             ++A +   A+A++ +         D  E   +  +
Sbjct: 373 LKTFCFDTETTSLD----------TKEARLIGLAFAFEKQKGFYVAVPADPEEAREILQE 422

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
                 +E +  V HN  ++  + K   G+ +  K    T +            +     
Sbjct: 423 FRAVFENEQIQKVGHNLKYDLAVLKWH-GVGVHGK-LFDTMLAHSLIEPEMRHGMDYMSE 480

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L +S        G     +                          EY   D + T +L
Sbjct: 481 VYLGYSPISITKLIGDEKSKQL--------------NMADVPVAKVAEYAAEDADVTWQL 526

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +++L PL           + E  L  +   +   G ++D   + +    +++E    ++ 
Sbjct: 527 WEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKEMANHEQT 586

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLI 278
           I +L      +      L   LF    I             T +  L            +
Sbjct: 587 IYRLAGQEF-NLNSPRQLGEILFDKLKISENAKKTKTGQYATNEQTLMDLAADHEIVQRL 645

Query: 279 LNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+   ++       + L   +    GR+  T      + TGR +      QN+P      
Sbjct: 646 LDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQAV-TTTGRLNSQNPNLQNIP------ 698

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   +       L+ AD + IE R++A ++ E 
Sbjct: 699 ------------------IRTEQGKEIRKAFVPRNEDYVLLSADYSQIELRIIAALSHEQ 740

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++ F    DI+  T A+ +  P+D+V+ E R   K++   + Y               
Sbjct: 741 GMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYG-----ISAFGLAQR 795

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L + +          F  +     +     D   +    + + G          R   + 
Sbjct: 796 LRIPRKEAATIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGR---------RRYMRD 846

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +      +  G                                       ++   ++ G+
Sbjct: 847 IRSANAAVRGGAERNAINAPIQGTAADMI---------------------KIAMINIHGE 885

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
            +                                             ++L VHDE+V + 
Sbjct: 886 LTKRK--------------------------------------LKSRMLLQVHDELVFDV 907

Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             T    V  +    M         +P++ E    K +
Sbjct: 908 HQTEENEVRQIVEEKMRTAIQ--LEVPIEVEIGSGKTW 943


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 109/693 (15%), Positives = 189/693 (27%), Gaps = 139/693 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
           + + ID ET S            A  A +   + A+                        
Sbjct: 330 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSL 109
            +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L
Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 437

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L       +   GK                +    +   A +L      +  E
Sbjct: 438 DELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDE 497

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E+++++      E  +  +   +   G +ID   + +    +  E  KL++      
Sbjct: 498 KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAA 551

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRL 282
           D    +      L+  LF   GI        ++    T +++L           +IL   
Sbjct: 552 DQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNR 610

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           + +       + L E +S  DGR+  T     A  TGR +      QN+P          
Sbjct: 611 SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP---------- 659

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 VR    A  G  +V AD + IE R++A ++G+   I A
Sbjct: 660 --------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 705

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +  
Sbjct: 706 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDN 760

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            S        F  +     +    ++Q       + L G    L           +    
Sbjct: 761 LSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKN 811

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +   G                     ++  R+     I                     
Sbjct: 812 ANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI--------------------- 850

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
                                           M         +VL        E  +T  
Sbjct: 851 ----------------------GS-----KLVM-QVHDE---LVL--------EVVETEL 871

Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             V   L  +M K       +PL AE    + +
Sbjct: 872 DFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 183/701 (26%), Gaps = 149/701 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  LF   GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++            P    L     
Sbjct: 827 -PDIRNKNTNARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS--- 882

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                   M         +VL       
Sbjct: 883 -------------------------------------KLIM-QVHDE---LVL------- 894

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +T    V   L  +M K       +PL AE    + +
Sbjct: 895 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 190/694 (27%), Gaps = 149/694 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
            L +D ET S   +          +A +    +A ++          DR +     +   
Sbjct: 349 ILSLDTETTSTDAI----------EAELVGLCFAVEEHKAFYVAIPNDRKQALQYVNIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               D +++ +  N  ++  + K   G+ +  K +  T +        L  ++       
Sbjct: 399 SVYEDPSILKIGQNIKYDYEVLKNY-GVTLQGKMF-DTMLAHYVLQPELRHNMDYMAETL 456

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN+     +   G               P    ++    A +   EY   D + T +L  
Sbjct: 457 LNYKTIHIEELIG--------------APGKHQKSMRDIAPEDAYEYGAEDADITLQLRN 502

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              E  L  +   +   G R+D   +    E+  +   +L+  I 
Sbjct: 503 VLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLERHIY 562

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
           +   G   +      +   LF    I +    ++     T + +L          + IL 
Sbjct: 563 EEA-GETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVEDILA 621

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  L + +    +   T      + TGR S      QN+P         
Sbjct: 622 HRGLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATGRLSSSDPNLQNIP--------- 672

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R C +   G     AD + IE R++A ++G++  I+
Sbjct: 673 ---------------VRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIE 717

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF  G DI+  T AK ++  I  V+ E+R   K     + Y        T      + + 
Sbjct: 718 AFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYG-----ITTYGLAQRMGID 772

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                +     F  + + +++    +++  +      L G          R     +   
Sbjct: 773 NKEARMLIEDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGR---------RRYLPDINSK 823

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +                                                +       
Sbjct: 824 NGTVRGFAERNA----------------------------------------INAPIQGS 843

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                ++   R +     ENI                      ++L VHDE+        
Sbjct: 844 EADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPEE 884

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         +PL A+      +
Sbjct: 885 KERVEKIVLEEMQGACQ--LKVPLTADAGWGNNW 916


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 91/686 (13%), Positives = 183/686 (26%), Gaps = 131/686 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 +  + 
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +   D  P D        A          + E     
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKEND 541

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +RL    D E  L  +   I   G  +D + + +       + ++++++I +L  G   
Sbjct: 542 AERLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA-GETF 598

Query: 234 SSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF    I +    ++     T + +L          + IL         
Sbjct: 599 NIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLL 658

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   GR+  +      + TGR S      QN+P                
Sbjct: 659 GTYIDALPLLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 701

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I   G     AD + IE R++A ++ +   I AF +  D
Sbjct: 702 --------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHD 753

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   +  V  + R   K     + Y               +++ +      
Sbjct: 754 IHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 808

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE +   +++         E    + +      L           +      +   
Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDINSRNAVVRGY 859

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                        +            ++
Sbjct: 860 AERNA----------------------------------------INAPIQGSAADIIKV 879

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
              R Y     E  +QA                   ++L VHDE+    P      V  +
Sbjct: 880 AMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVPVNEKERVEEI 920

Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++   +PLKA+    K +
Sbjct: 921 VIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 107/692 (15%), Positives = 186/692 (26%), Gaps = 131/692 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F    + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNI 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNKNT 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++            P    L              
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 882

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E  +T   
Sbjct: 883 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 902

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 903 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 185/701 (26%), Gaps = 157/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 352 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQIDLQD 401

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 460 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 504

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 505 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKL 564

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++   +      +      L+  LF   GI        ++    T +++L         
Sbjct: 565 EQEAYAVAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 624 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 681 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  G         
Sbjct: 719 GDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 774 AKSLGIDNISAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                     ++  R+     I             
Sbjct: 826 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI------------- 871

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                   M         +VL       
Sbjct: 872 ------------------------------GS-----KLVM-QVHDE---LVL------- 885

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E  +T    V   L  +M K       +PL AE    + +
Sbjct: 886 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 925


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 198/696 (28%), Gaps = 149/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
             ID+ET S  P           +  I   + ++  +         +         +   
Sbjct: 320 FAIDLETSSLDPF----------ECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L + L D     V  N  F+  +     GI+ P      T + A          +L +  
Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGIE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA 427

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L +     +     +    F    +D P       +   A   +  Y    ++    
Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFVDVPLEKAANYSCEDADITYRLYKTLSLKLHEA 486

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +L      +   E  L  +   +   G  +D + + KL E   ++ ++L E+I ++    
Sbjct: 487 DLENVFYKI---EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543

Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      +   LF   GI             T   +L           LIL       
Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L + V+   GR+  +    G + TGR S      QNLP              
Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  I+       +V AD + IE R+LA ++G++  ++AF  
Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEE 697

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ FN   ++V++E R               A      +   G+     S 
Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                        V+  +     E +   +   +  V    + +
Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                    R+     +           
Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
           ++  R            +Q  + DI+   M          K    +++ VHDE+V E P+
Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPN 858

Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               + V  +   MT        +PL+ +    K +
Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 87/702 (12%), Positives = 182/702 (25%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
             L +D ET   +P+           A +   +++  +         +       + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G+ +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKG-ALFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR---------------YACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF                  T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TSTGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K                      G+
Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGI 789

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +     + +   +   +  V
Sbjct: 790 SVFGLAER------------------------------MNVDRKEAKELIDGYFETYPSV 819

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   +                                       R+    D+    
Sbjct: 820 KAYMEKSIQIAQEKGYVETIFH--------------------------RKRFLPDINSRN 853

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 854 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDE 904

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    P      V  +        ++   +PLKA+    K +
Sbjct: 905 LNFSVPVNEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 109/692 (15%), Positives = 188/692 (27%), Gaps = 139/692 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL++      D
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAD 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++  R+     I                      
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI---------------------- 872

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E  +T   
Sbjct: 873 ---------------------GS-----KLVM-QVHDE---LVL--------EVVETELD 894

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 87/702 (12%), Positives = 182/702 (25%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
             L +D ET   +P+           A +   +++  +         +       + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G+ +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKG-ALFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR---------------YACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF                  T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TSTGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K                      G+
Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGI 789

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +     + +   +   +  V
Sbjct: 790 SVFGLAER------------------------------MNVDRKEAKELIDGYFETYPSV 819

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   +                                       R+    D+    
Sbjct: 820 KAYMEKSIQIAQEKGYVETIFH--------------------------RKRFLPDINSRN 853

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 854 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDE 904

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    P      V  +        ++   +PLKA+    K +
Sbjct: 905 LNFSVPVNEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 110/717 (15%), Positives = 199/717 (27%), Gaps = 185/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
           ++ +D ET +            A QA +   + + +                        
Sbjct: 340 QVAVDTETDNLD----------ATQARLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389

Query: 53  ----MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
               +   L   L D +++ +  N  ++ I+  +  GI +    +  T +L+        
Sbjct: 390 DLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQP--FDDTMLLSYDLDAGRH 446

Query: 107 -SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +    L   +      K     GK+ I         +                   Y
Sbjct: 447 GHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAAT-----------------RY 489

Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T  L+  L P            + +R L  +   +   G  +D   +  L   
Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSH 267
            A +  +L+E+I  +  G          L   LF   G+     S+       +  +   
Sbjct: 550 FAHDISRLEEEIY-VLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERL 608

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           +   ++    IL     S       + L   V+   GR+  +    GA +TGR S     
Sbjct: 609 AAEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPN 667

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G  L+ AD + IE 
Sbjct: 668 LQNIP------------------------IRTEIGREIRNAFIAKKGHLLLSADYSQIEL 703

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+ A +A E   ++AF   EDI+  T  + F      V +E RA  K +  A+ Y     
Sbjct: 704 RLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARAKTINFAILYG---- 755

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L++ +FS                                        + +
Sbjct: 756 -ISAWGLAARLEIDRFS---------------------------------------AQEM 775

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +   +        +                                 +  P  R
Sbjct: 776 IDRYFERFPAIRHYIDRTLDFVRLHGY--------------------------VETPFGR 809

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGY 622
           +     +K        A     R+           +Q +S DI+   M        K G 
Sbjct: 810 KTHLPAIKSRKVTERQAA---ERQAINAP------IQGMSADIIKRAMVRMEPALAKAGL 860

Query: 623 ---DIVLTVHDEIVSETPDTPYFSVGTLCSL--MTKN-PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+        +     M    P     + L+ E      +
Sbjct: 861 SSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSW 917


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 87/702 (12%), Positives = 182/702 (25%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
             L +D ET   +P+           A +   +++  +         +       + ++ 
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G+ +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKG-ALFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +       Y                Y   D + T +L
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR---------------YACEDADVTLKL 529

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   I   G  +D + + +       + ++++++
Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQE 589

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF                  T + +L          + I
Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +      + TGR S      QN+P      
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TSTGRLSSSNPNLQNIP------ 701

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   I   G     AD + IE R++A ++ +  
Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I AF +  DI+  T AK +   +  V  + R   K                      G+
Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGI 789

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +   ++                                 +     + +   +   +  V
Sbjct: 790 SVFGLAER------------------------------MNVDRKEAKELIDGYFETYPSV 819

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   +                                       R+    D+    
Sbjct: 820 KAYMEKSIQIAQEKGYVETIFH--------------------------RKRFLPDINSRN 853

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +        R            +Q  + DI+   M    +          ++L VHDE
Sbjct: 854 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDE 904

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    P      V  +        ++   +PLKA+    K +
Sbjct: 905 LNFSVPVNEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/726 (14%), Positives = 189/726 (26%), Gaps = 191/726 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49
             + +D ET +   +           A +   + A                         
Sbjct: 356 RIIAVDTETSALDAMR----------ADLVGISLATGANEACYIPLGHLNDGGGGSDMFS 405

Query: 50  --QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                +P     + L   L  + V+ +  N  ++  +  +     I       T +L+  
Sbjct: 406 EKPEQVPLDDAVAALKPLLESDAVLKIGQNIKYDLNVLARY---GIAVAPIDDTMILSFD 462

Query: 103 NGLP--------SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                         +       L  +    K   G                         
Sbjct: 463 LDAGRSEGGVGGHGMDELSERHLGHTPLSFKEVCGTGRKQ---------------IPFGE 507

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDL 203
                  EY   D + T  L + L P    E            L  +   +   G ++D 
Sbjct: 508 VPLDKATEYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDR 567

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEG 259
             + KL E  A E  KL++ I +L             L   LF   G             
Sbjct: 568 ARLAKLSEEFATETAKLEKTIHELAGKEFT-VGSPKQLGEVLFDDLGHKGGKKGKSGQYS 626

Query: 260 TLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRT 317
           T +S+L   +       D +L     +       + L +A++ D GR+  +    GA +T
Sbjct: 627 TDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSLVGA-QT 685

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   +  NG  L+
Sbjct: 686 GRLSSTDPNLQNIP------------------------IRTPIGRQIREAFVPENGNVLL 721

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+ A +A      +AFA GEDI+  T  + +     +  ++ RA  K +  
Sbjct: 722 AADYSQIELRLAAHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINF 777

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           A+ Y               L ++                                     
Sbjct: 778 AILYG-----ISRWGLAGRLKIEP------------------------------------ 796

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
                 + +   +  +  G+     +  E                               
Sbjct: 797 ---DEAQELIDTYFKRFPGIQSYIHETLETVRERGYSETLF------------------- 834

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN- 616
                   R+  +  +          +    R            +Q  S DI+   M   
Sbjct: 835 -------GRKTWFPRIGSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARM 878

Query: 617 ---ATKNGY---DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEG 667
                  G     ++L VHDE+V E P+    +   +   +M +   P+    +PL  E 
Sbjct: 879 MPALEDAGLEHVRMLLQVHDELVFELPEGDVEAASPIIERVMAEAALPAVELSVPLGIEI 938

Query: 668 YEAKRY 673
                +
Sbjct: 939 GTGASW 944


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 194/706 (27%), Gaps = 169/706 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A I   +++             +            + 
Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVL 413

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112
           + L  +L D     +  +  +++ +F    GI +       T + +       P +L + 
Sbjct: 414 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L   + S    +   GK                         +      Y   D + T 
Sbjct: 472 ALRHVSRSGISYEDLCGKGKNQ---------------IPFAQVSVDKAAAYSCEDSDQTL 516

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++   L P            + E         I   G  ID   + +    +     KL+
Sbjct: 517 DVHNTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLE 576

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           E+  ++      +      L    F   G+ +V  +      T + +L            
Sbjct: 577 EEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 635

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   + S       + L++     DGR+        A  TGR S      QN+P     
Sbjct: 636 LLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 689

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  GK +  AD + IE R++A ++G++
Sbjct: 690 -------------------VRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDE 730

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF NG D++  T A+ F   +D+VS EQ                            
Sbjct: 731 ALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQ---------------------------- 762

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +  L         A    +   A       +  ++ G
Sbjct: 763 ----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYPG 806

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +      E                                       RRLV  ++ G 
Sbjct: 807 VKRYMDQTVELAHAQGYVETVF--------------------------GRRLVLPEINGG 840

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                       R            +Q  + D++ + M               +++ VHD
Sbjct: 841 N---GPRKKAAERAAINAP------MQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHD 891

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V E P++    V   + ++M         +PL AE      + K
Sbjct: 892 ELVFELPESARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/705 (13%), Positives = 197/705 (27%), Gaps = 168/705 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPS 55
             ID+ET    PL           A I   +++W+ +                    +  
Sbjct: 315 FAIDLETTGTDPLK----------AHIVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLP 364

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
           ++ + L DE+   +  N  ++ ++ KK   I +    +  + + +          +L + 
Sbjct: 365 EIRKVLEDESKKKIGQNIKYDLLVLKKH-NIGLKGI-YFDSMIASYLLNPAKRNHNLDDI 422

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L++   +     G                                +Y  +D + T 
Sbjct: 423 AFEYLSYKTIMIAELIGSGKQQ---------------ITMDKVPVDKVCQYACQDADITF 467

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L + + PL           + E  L  +   +   G  I+ D + ++   +A + + L+
Sbjct: 468 RLAETMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLE 527

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLI 278
           ++I ++ +    +      L   LF    +           T  ++L+          L 
Sbjct: 528 KEIYRVAEQEF-NISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLA 586

Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     +       + L   ++ D G++  T      + TGR S      QN+P      
Sbjct: 587 LEYRQLAKLKSTYADALPNLLNQDTGKIHTTFNQTV-TSTGRLSSSNPNLQNIP------ 639

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   I S      + AD + IE R+LA  + + 
Sbjct: 640 ------------------VKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDT 681

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             ++AF    DI+    +  ++ P++ V+ E R   K +   +                G
Sbjct: 682 ALMEAFREDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGII--------------YG 727

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L+    S                                  L     +    A+   +QG
Sbjct: 728 LNEYGLS------------------------------RDTGLSLNDAKDFIDAYFTLYQG 757

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +    + E    +       +                          R+    D+   
Sbjct: 758 VREFRDKVVEEAKEMGYVKTLFN--------------------------RKRAIPDINAK 791

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                       R           I+Q  + D++   M N             ++L +HD
Sbjct: 792 NKRFRNLA---ERIAI------NTIIQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHD 842

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
           E++ E           +    M    +    +P+K      K + 
Sbjct: 843 ELLFEVGVQALEQTRIMVQEEMGHAVT--LRVPVKVNIKTGKNWM 885


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/715 (13%), Positives = 185/715 (25%), Gaps = 167/715 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
              ID ET S           Y  QA +   ++A           T              
Sbjct: 361 HFVIDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLD 410

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWI-CTSVLARTN 103
           +  +   L   L + ++  +  +  ++  +           I      W   T + +   
Sbjct: 411 RDTVLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVI 470

Query: 104 GL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   + +     L       +   GK                D    +    +QLF
Sbjct: 471 NAAVTRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLF 530

Query: 160 GEYCKRDVEAT--RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             + ++  + T   +L   L      E     +   +   G  I    + +L +   +E 
Sbjct: 531 ELFSQKLADDTNNAKLLHAL------EIPTAEILCQMEAHGILIKRPFLNELSKRFDEEI 584

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
             L++   ++      +      L   LF   G+     ++     T +++LS  +    
Sbjct: 585 IALEKRAYEVAGEEF-NLGSPKQLGEMLFDKLGVAGGKKTKTGQYSTGEAVLSKIDHP-- 641

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             D+ L     S       + L         R+  +      + TGR S      QN+P 
Sbjct: 642 LVDITLEYRGLSKLKSTYTDALDNVADSETDRVHTSYHQA-LTSTGRLSSTDPNLQNIP- 699

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G+ ++ AD + IE R++A  
Sbjct: 700 -----------------------IRTATGRLIRQAFIAPEGRVILAADYSQIELRLMAHF 736

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+     AF  G DI+  T A+     +  V+  +R   K +                 
Sbjct: 737 SGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAIN--------------FG 782

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A + ++  +  +     +  
Sbjct: 783 LLYGMS------------------------------AFGLAKQLQMSRSEAQDYIDMYFE 812

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ GV     +              +                           R+L   D
Sbjct: 813 RYPGVKDYMINTRASAYEHGYVETIL--------------------------GRKLYTPD 846

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTV 628
           +      +        R             Q  + D++   M    K    +   ++L V
Sbjct: 847 INHSNRMVKQGA---ERAAINAPL------QGSAADLIKLAMIAVDKVLPKHQAKMLLQV 897

Query: 629 HDEIVSETPDTPYFSVGTLC-SLM-----TKNPS--WAKG--LPLKAEGYEAKRY 673
           HDE+V E        +  L    M            W     +PL  E    + +
Sbjct: 898 HDELVFEVDANKVDEISQLITDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNW 952


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/673 (14%), Positives = 178/673 (26%), Gaps = 152/673 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSA-------MPS 55
           + ID ET S           +A +A +   + A  ++   +  D                
Sbjct: 318 IAIDTETTSE----------HAVEADLVGISIAIGEQAWYVPIDHAHTDTHRNMPTADVQ 367

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
            L+  L    ++ V  N  ++ I+ ++   + +P  R   T + +           L   
Sbjct: 368 KLITALDRSDLLLVGQNIKYDLIVLQRH-DMALPQPRLFDTMIASYLLDANRRSHGLDQL 426

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L+      K    K           D       R     A      Y        +
Sbjct: 427 AVEFLSHEMIAFKDVVPKG------STFRDVDIPTAARYAGEDAAITLALYNLFAPRIEQ 480

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E  +    +   E  L  +   +   G  +D +++  L E   +   +L+E I +L  G 
Sbjct: 481 EYHELFHAI---EMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEKIYELA-GE 536

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF   GI  V  ++    T  S+L          +++      S   
Sbjct: 537 AFNINSPKQLATLLFEKMGIPPVKKTKTGYSTDVSVLEALAPQYEIANVLTQYRMVSKLL 596

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +N LSE ++   GR+  +     A+ TGR S      QN+P                
Sbjct: 597 STYVNALSELINPWTGRIHTSFNQTVAN-TGRLSSSDPNLQNIP---------------- 639

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           VR   + + G   V AD + IE R+ A ++G++           
Sbjct: 640 --------IRTEEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESM--------- 682

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NV 466
                                                    K+ A    +  Q       
Sbjct: 683 ----------------------------------------LKSFAEEKDIHAQTADAIFG 702

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
            S   +    +A +  +       + +    +     + +  ++  ++ GV         
Sbjct: 703 SSEPNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEGQALIDSYFLRYPGVKAYIDHQIA 762

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  RR    D+      +  A  +
Sbjct: 763 FAREHGYAQTLY--------------------------GRRRYLPDINSRNRNIREAAER 796

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642
                          +Q  S DI+   M    +        ++L +HDE++ E P     
Sbjct: 797 N---------AVNMPIQGTSADIIKIAMNRIHQQLAPYQARMLLQIHDELLFEVPFEQAE 847

Query: 643 SVGT-LCSLMTKN 654
                L   M   
Sbjct: 848 PFSAFLQEQMESA 860


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 109/712 (15%), Positives = 193/712 (27%), Gaps = 166/712 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------QSAMPSD 56
           + +D ET     +           A +   + A                        P  
Sbjct: 365 IGVDTETDGLDAIG----------ANLVGVSLALGPNDACYIPLGHTGDGDLLGDGAPEQ 414

Query: 57  ---------LLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN 103
                    L   L D T++ V  N  ++  +F +     L   I       T +L+   
Sbjct: 415 MDMKLALGILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAAL 474

Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156
                   +        +      K   G  K  I        ++  Y    A+  ++ W
Sbjct: 475 EAGQHNHGMDVLSELHFDHKPIPFKEVAGTGKKQITFDKVPVPEATKYAAEDADVTLRLW 534

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            L       +  AT             ER +  +   +   G  ++ + + +L    AQ 
Sbjct: 535 ALLKPRLSAEGMATL--------YETIERPMVPVVAQMERAGIFVERETLSRLSGDFAQR 586

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271
             + + +  +L      +      L   LF    +     ++     T    L       
Sbjct: 587 MAQYEAEAYELAGREF-NMGSPKQLGEILFGEMELPGGKKTKTGAWATGADALEDLAAEG 645

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                ++L   + S       + L E ++   GR+  +    GA +TGR S      QN+
Sbjct: 646 HELPKILLGWRSLSKLKSTYTDALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQNI 704

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R+  +A  G  L+ AD + IE R+LA
Sbjct: 705 P------------------------IRTEEGRKIRAAFVAQEGNVLIAADYSQIELRLLA 740

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I   D    AF N  DI+  T ++ F  PI+ +    R   K +               
Sbjct: 741 HIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAIN-------------- 786

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  +         KA+
Sbjct: 787 FGIIYGIS------------------------------AFGLARQLGIPRGEASEYIKAY 816

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            AK  G+L+   ++            +                            RR+  
Sbjct: 817 NAKFPGILKYMDEMKAFAREKGYVETAF--------------------------GRRIWM 850

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG--YDI 624
             + G             R+            Q  + DI+   M        K+G    +
Sbjct: 851 KGINGK----GPERGFAERQAINAPL------QGSAADIIKRAMVKMPAALEKSGLQAKM 900

Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ E P      ++  +  +M     P     +PL  E   A  +
Sbjct: 901 LLQVHDELIFEAPKAEAEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSW 952


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 195/694 (28%), Gaps = 142/694 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 351 KIGIDTETTSLD----------AMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQLDLQY 400

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 401 VLGYLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 458

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +      + D 
Sbjct: 459 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 517

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 518 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 570

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 571 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 629

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 630 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 679

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 680 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 724

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +   L Y  G            L + 
Sbjct: 725 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 779

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 780 NLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNK 830

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                     ++               R LV  D+K      
Sbjct: 831 NANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDLKSKL--- 875

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                               I+Q                    +VL        E P+  
Sbjct: 876 --------------------IMQ-------------VHDE---LVL--------EVPEAE 891

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             SV   L  +M K       +PL AE      +
Sbjct: 892 LDSVKEKLPQIMAKVDDGMLKVPLVAEVGVGMNW 925


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 203/702 (28%), Gaps = 163/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
               D ET S  P           QA +   ++A+                  A+  +  
Sbjct: 363 TFCFDTETTSLDP----------YQAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFR 412

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
             L   T   V  N  ++ ++  +T GI++       T V         P ++       
Sbjct: 413 PLLESTTQCKVGQNLKYDNLIL-RTYGIEVAP-PIFDTMVAHYLVAPDKPHNMNAIAESY 470

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN++    +   G     +              ++  +   +L  EY   D + T +L +
Sbjct: 471 LNYAPIPIEALIGSRKSTQ--------------KSMRMVDVELVKEYACEDADITLQLKR 516

Query: 176 RL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L  +   +  +G +ID  ++ ++   +  E   L+++I 
Sbjct: 517 LLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIH 576

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +L      +      L   LF    I             T + +L+           IL+
Sbjct: 577 RLAGHAF-NISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILD 635

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L + +S  DG++  +      + TGR S      QN+P        
Sbjct: 636 YRELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVT-TGRLSSTNPNLQNIP-------- 686

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +       L+ AD + IE R++A  + ++  
Sbjct: 687 ----------------IRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHM 730

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF  G+DI+  T +K F  P+++V +  R   K                      G+ 
Sbjct: 731 IEAFKAGKDIHTATASKLFKVPLEQVDESMRRQAKTAN--------------FGIIYGIS 776

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               +Q +                               +  +      +A+  +   + 
Sbjct: 777 GFGLAQRL------------------------------GISRSEAIATIQAYFQEFHAIK 806

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +             +                           R+    D+    S
Sbjct: 807 AYMDRVIGQAREQGYVTTLM--------------------------GRKRYLRDINSRNS 840

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632
            L     +               +Q  + +++   M +        K    ++L VHDE+
Sbjct: 841 TLRGFDERN---------AINTPIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDEL 891

Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V + P      +   +   M  +   A G+P++ +    K +
Sbjct: 892 VFDVPQHEIEIMREHVAYFMKNSLPLA-GVPVEVQIGLGKNW 932


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 108/700 (15%), Positives = 200/700 (28%), Gaps = 154/700 (22%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMP 54
           M +  +  D ET    PL           A +   A++W+          E       + 
Sbjct: 368 MKQNSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIPFPEDKNQAQEII 417

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +   E +  +  N  ++  +  K   I +  K +  + +           ++   
Sbjct: 418 ETLRPFFESEMIEKIGQNLKYDIKVLHKY-NIQVKGK-FFDSMLAHYLINPDMRHNMDVL 475

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN++        GK    +                      +   EY   D + T 
Sbjct: 476 SETYLNYTPVSITELIGKKGKNQLS--------------MRDVPLEKQTEYAVEDADITY 521

Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           +L +   P              E  L  +   +   G  +D + +  L E +  + K+L 
Sbjct: 522 QLAQHFRPELAEASTEELFNTIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQ 581

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKD 276
             I K  D    +      L   LF    + D    ++     T + +LS+         
Sbjct: 582 SKIYKEADQEF-NIASPKQLGEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIR 640

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L     S      ++ L   V    GR+        A  TGR S      QN+P    
Sbjct: 641 NVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP---- 695

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394
                                       VR   +       L+ AD + IE R++A ++ 
Sbjct: 696 --------------------IRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSE 735

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ED  I+AF NGEDI+ +T +K F+ P+D+V++EQR+  K +   + Y             
Sbjct: 736 EDTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVS-----AFGLS 790

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
              DL +        + ++ + +  ++     D   +      ++G          R   
Sbjct: 791 NQTDLSRTEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGR---------RRYL 841

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           + +      +               +                          ++   ++ 
Sbjct: 842 KDINGSNAIVRGAAERNAVNAPIQGSAADII---------------------KIAMINIH 880

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
              S  N  T                                       ++L VHDE+V 
Sbjct: 881 KKLSEGNYKTK--------------------------------------MLLQVHDELVF 902

Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +        + +L    M      A  +PL  E      +
Sbjct: 903 DVHKAELEELKSLIQSEMENAYKLA--VPLDVELGLGDNW 940


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 101/722 (13%), Positives = 195/722 (27%), Gaps = 184/722 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50
           + +D ET     L        A  A +   + + D                         
Sbjct: 366 IAVDTET---DDLS-------ATHAKLCGISLSTDTNCACYIPLGHLASDGLDFGGGDDL 415

Query: 51  SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
             +P D     L   L +  ++ V  N  ++  + K+  GID+    +  T +++     
Sbjct: 416 KQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVLKRY-GIDVAP--YDDTMLMSYVVEG 472

Query: 105 --LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                    ++    A +   +
Sbjct: 473 GLHGHGMDELSQLHLGHTPIPFKQVAGSGKT---------------LKSFKFVALKEATQ 517

Query: 162 YCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+  L P              ER +      +   G R+D  ++  L +
Sbjct: 518 YAAEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQ 577

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267
                   ++++          +      L +  F    +     +      T   +L  
Sbjct: 578 DFGTRMNAIEQEAHAHLGRPF-NLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKVLED 636

Query: 268 SNIT-------QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
                      Q    L+L+    +       + L E      +   T     ++ TGR 
Sbjct: 637 IAEGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLASTTTGRL 696

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P                                +R+  IA  G KL+ AD
Sbjct: 697 ASNEPNLQNIP------------------------IRTGEGRKIRTAFIAKPGCKLISAD 732

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA I   +   KAF++G+DI+  T ++ F  P+  ++ E R   K +     
Sbjct: 733 YSQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINF--- 789

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     +  +                                  
Sbjct: 790 -----------GIIYGISGFGLANQLGIDQG----------------------------- 809

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                  K +  +  G+        +                                 +
Sbjct: 810 -EASRYIKTYFERFPGIKDYMDATKQFLRDNG--------------------------FV 842

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616
                R++   ++ G    +        R            +Q  + DI+   M      
Sbjct: 843 QTLMGRKIHIPEINGKGGAIKAFA---ERAAINAP------IQGTAADIIRRAMMRMQPR 893

Query: 617 ATKNGY--DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAK 671
               G+   ++L VHDE++ E P+    +V   +  +M     P+    +PL  E   A 
Sbjct: 894 LDAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEVMQNAALPAVQISVPLVVEAKAAN 953

Query: 672 RY 673
            +
Sbjct: 954 NW 955


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 193/706 (27%), Gaps = 169/706 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
            +D ET S   +           A I   +++             +            + 
Sbjct: 358 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVL 407

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112
           + L  +L D     +  +  +++ +F    GI +       T + +       P +L + 
Sbjct: 408 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 465

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L   + S    +   GK                         +      Y   D + T 
Sbjct: 466 ALRHVSRSGISYEDLCGKGKNQ---------------IPFAQVSVDKAAAYSCEDSDQTL 510

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           ++   L P            + E         I   G  ID   + +    +     KL+
Sbjct: 511 DVHNTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLE 570

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277
           E+  ++      +      L    F   G+ +V  +      T + +L            
Sbjct: 571 EEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 629

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   + S       + L++     DGR+        A  TGR S      QN+P     
Sbjct: 630 LLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 683

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR   +A  GK +  AD + IE R++A ++G++
Sbjct: 684 -------------------VRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDE 724

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AF NG D++  T A+ F   +D+VS EQ                            
Sbjct: 725 ALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQ---------------------------- 756

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +  L         A    +   A       +  ++ G
Sbjct: 757 ----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYPG 800

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +      E                                       RRLV  ++ G 
Sbjct: 801 VKRYMDQTVELAHAQGYVETVF--------------------------GRRLVLPEINGG 834

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                       R            +Q  + D++ + M               +++ VHD
Sbjct: 835 N---GPRKKAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHD 885

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V E P+     V   + S+M         +PL AE      + K
Sbjct: 886 ELVFELPEAARDWVQAEIPSIMAGVAD--LSVPLLAEIGFGSSWEK 929


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 187/692 (27%), Gaps = 131/692 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMG-----QYGLAKSLGIDNL 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++            P    L              
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 882

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E  +T   
Sbjct: 883 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 902

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 903 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 95/692 (13%), Positives = 187/692 (27%), Gaps = 154/692 (22%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQ 59
           D ET S  P            A +      W +  +       +         +   L  
Sbjct: 367 DTETTSLDP----------RDAQLVGIGCCWSEGDIAYLPIGHRQGSNLDWELVKQSLQP 416

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116
              D        N  ++  +F +  GI +   ++    + +         +L +     L
Sbjct: 417 LWEDPNRPKSLQNCKYDLSIF-RAHGIRLQGIQF-DPMLASYVLDPEASHNLADLAATHL 474

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---EL 173
           N      K   GK           D P           A+  +        +  +    L
Sbjct: 475 NLPTTSYKKLLGKEQ------SIADIPISKVAEYCGTDAYCAYRLVPILTEKLQKTDPRL 528

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +         E  L  + + +   G R+D + + +  + + QE + L++       G   
Sbjct: 529 WDLF---IQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQELQSLEQKAYAQA-GETF 584

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      L   LF    +D+    +      T  S+L          + I+     +   
Sbjct: 585 NLNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGDHPLIETIVQYRTLAKLK 644

Query: 289 ILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   V SD GR+         + TGR S      QN+P                
Sbjct: 645 STYVDALPALVRSDTGRVHTDFNQTV-TATGRLSSSNPNLQNIP---------------- 687

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   I   G  L  AD + IE R+LA ++ E   ++ F +GED
Sbjct: 688 --------IRTEFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEGFRSGED 739

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++                                               L  +   +  +
Sbjct: 740 VHT----------------------------------------------LTARLLLEKQE 753

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
            TS      +  ++ +        FA    +  +  +   + +  ++ G+    +     
Sbjct: 754 ITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQRFNERYAGIFAYLRSTEAF 813

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +  RR                    P+  RL     + +           
Sbjct: 814 VEKHGYVETILGRRRYF------------------PNLSRLTGHRKQAELRA-------- 847

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643
                         +Q  + DI+   M    +        ++L VHDE+V E   + + +
Sbjct: 848 ---------AVNAPIQGSASDIIKVAMVRLRQKLQNFRSRLLLQVHDELVFEVDPSEWQA 898

Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +   +   M         +PL  +      ++
Sbjct: 899 LKPLIQREMEGAVP--LSIPLVVDIQIGHNWK 928


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 98/702 (13%), Positives = 193/702 (27%), Gaps = 167/702 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------PSDLL 58
            D+ET S   +          QA     ++A +           Q+ +        + L 
Sbjct: 328 FDVETDSLNYM----------QAHWVGISFAVEAGEAWYLPLVHQNGINLPFAETLAALK 377

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL- 114
               + ++  +  +  F+R +  +  GI +       T +++          ++ +    
Sbjct: 378 NLFENASIRKIGQHLKFDRHILARY-GISLNGV-IDDTMLMSYCYNSTATRHNMDDLADF 435

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN      +   G     R                      +   +Y   D + T +L+
Sbjct: 436 YLNKQTIRFEDIAGSGAKQR---------------RFDEIDLETAMQYACEDADITLQLY 480

Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +                 + ER L  +   +  +G +I  D +    + +A + K L + 
Sbjct: 481 QFFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQ 540

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI--TQLAKDL 277
             +L  G+  +      L+  LF    +            T + +L            ++
Sbjct: 541 AYQLAGGVF-NLDSPKQLQEILFERLALPVIHKTPTGQASTNEEVLQKLAELRQSALPEI 599

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           ILN  A         + L E +  D +   T      + TGR S      QN+P      
Sbjct: 600 ILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQNIP------ 653

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA  G  ++ AD + IE R++A ++ ++ 
Sbjct: 654 ------------------IRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDER 695

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             +AF   +DI+  T A+ F+   + V + QR   K +                    G+
Sbjct: 696 LQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAIN--------------FGLIYGM 741

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A +  +  T        +  ++  V
Sbjct: 742 S------------------------------AFGLARQLNISRTQAAEYIDKYFHRYPQV 771

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           L       +           +                           RRL   D+    
Sbjct: 772 LAYMDSARQTAQQQGYVSTLL--------------------------GRRLYIPDIHNKN 805

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEI 632
                      R            +Q  + DI+   M         +    +++ VHDE+
Sbjct: 806 M---QRRRAAERLAINAP------MQGSAADIIKLAMVQFWQTYGAQKECRLLMQVHDEL 856

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E            +  +M         +PL  +   +K +
Sbjct: 857 VFEVATAALDIWQPRITHIMEHALP--LSVPLIVDCGVSKDW 896


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 187/692 (27%), Gaps = 131/692 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 331 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 381 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 438

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 439 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 498

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 499 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 552

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 553 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 611

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 612 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 659

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 660 -------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 706

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +   
Sbjct: 707 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 761

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 762 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 812

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++            P    L              
Sbjct: 813 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 860

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E  +T   
Sbjct: 861 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 880

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 881 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 912


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 187/701 (26%), Gaps = 159/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE    V  N  ++R +      I++       T + +           + 
Sbjct: 402 LALLKPLLEDENAHKVGQNLKYDRGILANY-DIELRGI-VFDTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P                  L  +   +   G +I   ++ K  E +     
Sbjct: 505 TLQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLN 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L++   ++  G   +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEQKAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     +       + L   ++   GR+  +      + TGR S      QN+P  
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA     +V AD + IE R++A ++
Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AFA G+DI+  T A+ F  P+D V+ EQR   K +   L Y            
Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGL 773

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    + Q  E    + L G    L        
Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYL-------- 825

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +         G                A++ +  M      +    P  R       
Sbjct: 826 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDGWLQTEQPRVR------- 875

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH    
Sbjct: 876 --------------------------MIMQ-------------VHDE---LVFEVH---- 889

Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    SV   +  LM         +PL  E    + +
Sbjct: 890 ----KDDLESVSKKIHQLMEN--ETHIDVPLLVEVGSGENW 924


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 113/711 (15%), Positives = 201/711 (28%), Gaps = 174/711 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52
             +  D ET S +P            A +      W  E   +                 
Sbjct: 368 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEE 417

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           +   L   L  E       N+ F+R++  ++ GI +       T + +         +L 
Sbjct: 418 VLPALRPILESENYPKTLQNAKFDRLIL-RSQGITLKGV-VFDTMLASYVINPESSHNLT 475

Query: 111 NACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +  L     L            K                   +            YC  D
Sbjct: 476 DLSLRYLPDLGIVAQSYSQLVPKG------------------KTIADLDINTVANYCGLD 517

Query: 167 VEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           V  T ++ +++  +              E+ L  +   +  +G RID D + +L + + +
Sbjct: 518 VFTTFQITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGE 577

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270
             + L++       G + +      L   LF    +D            T  ++L     
Sbjct: 578 TLESLEK-ASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKH 636

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
                + IL     S      ++ L E V SD GR+         + TGR S      QN
Sbjct: 637 DHPVINYILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQA-ITSTGRLSSSHPNLQN 695

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                             S  +R   I  +G  LV AD + IE R+L
Sbjct: 696 IP------------------------IRTEFSRQIRKAFIPESGWLLVSADYSQIELRIL 731

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ E   I+A+   +D++  T    F+                  L            
Sbjct: 732 AHLSQEKMLIEAYNTNQDVHSLTAQLLFDKD--------EITADERRLG--------KII 775

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G+  Q+                              FA +  +  TA +     
Sbjct: 776 NFGVIYGMGSQR------------------------------FAREVGVSATAGKQFIDR 805

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           + +++ GV +  +               +                           RR  
Sbjct: 806 FNSQYPGVFEYLESQKLAAINQGYVETIL--------------------------GRRRY 839

Query: 570 YSDVKG-DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624
           +  +KG D   LN    Q++R            +Q  S DI+   M    +        +
Sbjct: 840 FESLKGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARL 893

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +L VHDE+V E P + +  +   + S M         +PL  + +    + 
Sbjct: 894 LLQVHDELVFEVPLSEWEELQHQIKSTMENC--LFLSVPLVVDIHAGTNWM 942


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 114/711 (16%), Positives = 204/711 (28%), Gaps = 174/711 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52
             +  D ET S +P            A +      W  E   +                 
Sbjct: 173 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 222

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           +   L   L  E       N+ F+R++  ++ GI +       T + +         +L 
Sbjct: 223 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGV-VFDTMLASYIINPESSHNLT 280

Query: 111 NACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +  L     L            K                   +            YC  D
Sbjct: 281 DLSLRYLPDLGIVAQSYSQLVPKG------------------KTIADLDINTVANYCGLD 322

Query: 167 VEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           V  T ++ +++  +              E+ L  +   +  +G RID D + +L + + +
Sbjct: 323 VFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGE 382

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270
               L++   +   G + +      L   LF    +D            T  ++L     
Sbjct: 383 TLDNLEKTSHQAA-GEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKH 441

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329
                + IL     S      ++ L E V SD GR+         + TGR S      QN
Sbjct: 442 DHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQA-ITSTGRLSSSHPNLQN 500

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                             S  +R   I  +G  LV AD + IE R+L
Sbjct: 501 IP------------------------IRTEFSRQIRKAFIPESGWLLVSADYSQIELRIL 536

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ E   I+A+   +D++  T    F    D ++ E+R +                  
Sbjct: 537 AHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRL--------------GKII 580

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G+                                  FA +  +  TA +     
Sbjct: 581 NFGVIYGMG------------------------------AQRFAREVGVSATAGKQFIDR 610

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           + +++ GV +  +               +                           RR  
Sbjct: 611 FNSQYPGVFEYLESQKLAAINQGYVETIL--------------------------GRRRY 644

Query: 570 YSDVKG-DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624
           +  +KG D   LN    Q++R            +Q  S DI+   M    +        +
Sbjct: 645 FESLKGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARL 698

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +L VHDE+V E P + +  +   + S M         +PL  + +    + 
Sbjct: 699 LLQVHDELVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 747


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 199/695 (28%), Gaps = 152/695 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET    PL           A +   A++W+          E       +   L  
Sbjct: 375 VCFDTETTGLDPLT----------AELVGIAFSWEKGKGFYLPIPEDREAAQVIVDQLKP 424

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +    ++  V  N  ++  +  K  G+D+       T +           ++       L
Sbjct: 425 FFESASIEKVGQNLKYDIKVLDKY-GVDVKG-PMFDTMLAHYLINPDMRHNMDVLAETYL 482

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++        GK    +                      +   EY   D + T +L + 
Sbjct: 483 NYTPQSIVELIGKKGKNQLS--------------MRDVDLEKQKEYAVEDADITLQLKEH 528

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P            D E  L  +   +   G  +D D +  L   +  +  +L++DI +
Sbjct: 529 FTPELASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYE 588

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNR 281
           +      +      L + LF    + D    ++     T + +LS+          +L+ 
Sbjct: 589 VAGEEF-NIGSPKQLGVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQNVLDY 647

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   V     R+        A  TGR S      QN+P         
Sbjct: 648 RGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVA-ATGRLSSTDPNLQNIP--------- 697

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR   I       L+ AD + IE R++A ++ E+  I
Sbjct: 698 ---------------IRTERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMI 742

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF +GEDI+ +T AK FN  ++ V++EQR+  K +   + Y                DL
Sbjct: 743 AAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTDL 797

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +        + +  + + +++     D   E    + ++G          R   + +  
Sbjct: 798 SRGEAKELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGR---------RRYLKDINS 848

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               +               +                          ++   ++      
Sbjct: 849 SNAVVRGAAERNAVNAPIQGSAADII---------------------KIAMINIHKKFEE 887

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
           +N  +                             M           L VHDE+V +  + 
Sbjct: 888 MNCKSK----------------------------ML----------LQVHDELVFDIHND 909

Query: 640 PYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               +  L    M     +   +PL  E    + +
Sbjct: 910 ELEDMKKLIQGEMQNA--YKMTVPLDVEVGTGQNW 942


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/705 (15%), Positives = 211/705 (29%), Gaps = 168/705 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYL 61
              +D+ET S  P+          QA +   + + +           +   +P  L   L
Sbjct: 320 IFALDLETTSLNPV----------QAHVVGISLSCEAGVACYIPLAHRYFGVPEQLDLDL 369

Query: 62  RD---------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
                        +  V  N  ++ I+ K + G+++    +  T + +          ++
Sbjct: 370 VLKKLKPLLEDPKLKKVGQNIKYDLIVLK-SEGVNLVGVAF-DTMLASYILNPSGRRHNM 427

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L ++    K   G A                          +L  EY   D +
Sbjct: 428 NDMARDYLGYTTTKYKEVVGTASK---------------EIGFDKVDIELATEYAAEDAD 472

Query: 169 ATRELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            T  L++ L PL          + E  L  +   +   G ++D   + KL +LI Q+ + 
Sbjct: 473 ITWRLYENLSPLLQGDDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLED 532

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276
             ++I  L      +      L + LF    + ++  ++    T  S+L          D
Sbjct: 533 QQKEIYSLAGEEF-NINSPKQLSVILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELPD 591

Query: 277 LILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L             + L E + ++ GR+  +     A  TGR S      QN+P    
Sbjct: 592 VVLTYRQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVA-ATGRLSSSNPNLQNIP---- 646

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A     L+ AD + +E RVLA ++ +
Sbjct: 647 --------------------IRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLAHLSED 686

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  + AF  GEDI+  T  + F T  +++  E R + K +                    
Sbjct: 687 EALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNF--------------GIVY 732

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           GL     S+ +K       + +                          +     + A ++
Sbjct: 733 GLSAFGLSKQLKI------YPK------------------------DAKKFIDQYFALYK 762

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V     +       V      ++                          RR    D+K 
Sbjct: 763 KVKVYMVETVAQAKEVGYTLTLMN--------------------------RRRYLPDLKS 796

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629
                        R          + VQ  + D++   M          K    ++L VH
Sbjct: 797 QN---RQVRESAERIAI------NSPVQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVH 847

Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P+     +  L    M +       +PL  +    + +
Sbjct: 848 DELVFECPEDEEQEMRALVTKEMEEVMP--LKVPLIVDIGWGENW 890


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/712 (15%), Positives = 209/712 (29%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52
               +IET S  P+          QA I   + A   E                      
Sbjct: 380 YFAFNIETTSLNPI----------QAKIIGFSLALQPEKAAYIPLEHTEEGCDLLGGGCV 429

Query: 53  --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   + + L   L D+ V+ + +N  +  ++ K+     I ++ +    +++    
Sbjct: 430 VTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIMKQYA---IVTQPFDDIMLISYALD 486

Query: 105 LP---SSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157
                 +        L       K     GK + +        +  Y    A+  ++ WQ
Sbjct: 487 AGTSTHNRDILSERWLKHKPIAYKDLTHNGKKITSFAQVDLKQATFYAAEGADITLRLWQ 546

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +             ++++RL      +R L  +   + +RG  +D  ++ +L   +AQ  
Sbjct: 547 VLKPQLVAQGVT--KIYERL------DRPLIEVLAKMEERGILVDRQILSRLSCELAQAA 598

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NIT 271
             L+E+I +L  G   +      L   LF   G+     ++     T   IL        
Sbjct: 599 LSLEEEIYQLV-GERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQILEELAAEGH 657

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            L + ++  R   +       + L   +    GR+         + TGR S      QN+
Sbjct: 658 TLPRKIVDWRQ-LTKLKSTYTDALPYYILPETGRVHTNYSLAT-TSTGRLSSSEPNLQNI 715

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R+  IA  G  L+ AD + IE R+LA
Sbjct: 716 P------------------------IRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILA 751

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AFA  +DI+  T ++ F   ++ +  + R   K +               
Sbjct: 752 HIANITALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINF------------- 798

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   A +  +           +
Sbjct: 799 -GIIYGIS------------------------------AFGLANQLSISRNEASRYIDIY 827

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             +  G+    +                                           RR+ Y
Sbjct: 828 FERFPGIKDYMETTKSFARQHGYVETIF--------------------------GRRIHY 861

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624
            ++K   S + T      R            +Q  + DI+   M          K    +
Sbjct: 862 PEIKATNSQIRTF---NERAAINAP------IQGSAADIIRRAMIQMEGALKKEKLSAKM 912

Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ E P+T       L   +M     P+ +  +PLK +   A+ +
Sbjct: 913 LLQVHDELIFEVPETESEKTKVLVTKVMENAAMPALSLSVPLKVKVAAAQNW 964


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 94/697 (13%), Positives = 192/697 (27%), Gaps = 153/697 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET S   L          +A +   +++   +         +      ++   
Sbjct: 349 RIVSLDTETTSLNAL----------EAELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398

Query: 62  ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E +  V  N  ++  + +   GI +       T +        L  ++ +    
Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLRNY-GITMKG-PLFDTMIAHYLLQPELRHNMDDMAET 456

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L +         G K       +        D               Y   D + T +L
Sbjct: 457 YLRYKTIHIDQLIGAKGKDQLNMRSLAPEQIVD---------------YACEDADITLQL 501

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                P            + E  L  +   +   G ++D+  + ++ +   ++    ++ 
Sbjct: 502 KNIFEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQK 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    + +    ++     T +  L          D I
Sbjct: 562 IYELA-GETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEI 620

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + V+   G +  +      + TGR S      QN+P      
Sbjct: 621 LKYRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQAT-TATGRLSSSDPNLQNIP------ 673

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                               G     +R C I + G     AD + IE R++A ++G++ 
Sbjct: 674 ------------------VRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDEN 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF  G DI+  T AK +  PID+V++++R   K     + Y               L
Sbjct: 716 MIEAFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITV-----FGLAERL 770

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++++          F  + Q +++    ++   +    +  +     L           +
Sbjct: 771 NIERNEAKQLIEGYFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLA---------DI 821

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                                +    
Sbjct: 822 NSQNATVRGYAERNA----------------------------------------INAPI 841

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                   +L   R Y     E          +   M           L VHDE+     
Sbjct: 842 QGSAADIIKLAMVRIYERFNNEG---------IKSKMI----------LQVHDELNFSVL 882

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +    M     +A  +PL A+      +
Sbjct: 883 PNEKEQVEKIVLEEMQNA--FALKVPLIADAGWGANW 917


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/697 (14%), Positives = 188/697 (26%), Gaps = 153/697 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSD---L 57
           + L +D ET S   +           A +   ++A  ++          +          
Sbjct: 351 NILSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIF 400

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
                +  ++ V  N  ++  +     GI+I  K +  T +        L  ++      
Sbjct: 401 KPLYENPEILKVGQNIKYDYEVLINY-GIEIQGKMF-DTMLAHYLIQPELYHNMDYLAEV 458

Query: 116 -LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            LN+     +   G K    +  +    S  Y               EY   D + T  L
Sbjct: 459 FLNYQTIHIEELIGPKGKNQKSMRDLAPSDIY---------------EYAAEDADITLRL 503

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L                E  L  +   +   G  ID D + +  E +     +++  
Sbjct: 504 KNVLESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHH 563

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +L  G   +      +   LF    I +    ++     T + +L          D I
Sbjct: 564 IYELA-GESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEI 622

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           LN           ++ L + ++S  G +  +      + TGR S      QN+P      
Sbjct: 623 LNYRGLKKLLGTYIDALPKLINSRTGHIHASFNQA-ITATGRLSSSDPNLQNIP------ 675

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C I   G     AD + IE R++A ++ +  
Sbjct: 676 ------------------VRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPN 717

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++AF  G DI+  T AK ++  I +V+  QR   K     + Y        T      +
Sbjct: 718 MVEAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYG-----ITTFGLAQRM 772

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           +++           F  +   +++    ++   E    + L            R     +
Sbjct: 773 NIENREAKQIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHR---------RRYLPDI 823

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +                                   I +   R       +G  
Sbjct: 824 NSKNGTVRGFAERNAINAPIQG---------------SEADIIKVAMIRIFNRFRAEGIR 868

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
           S +                    I+Q                        VHDE+     
Sbjct: 869 SKM--------------------IIQ------------------------VHDELNFSVY 884

Query: 638 DTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +    M     +   +PL A+      +
Sbjct: 885 PEEKEKVEKIVVEEMQNA--YQLSVPLVADAGWGNNW 919


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 190/701 (27%), Gaps = 165/701 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           + ID ET S   +           A +   +++ +++                +      
Sbjct: 350 VSIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKP 399

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
               + +M +  N  ++  +  +  G+ +  K +  T +        L  ++       L
Sbjct: 400 LYESDKIMKIGQNIKYDYEVLTRY-GVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETLL 457

Query: 117 NFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
            +     +   G K    +  +    +  Y               EY   D + T  L  
Sbjct: 458 GYQTIHIEELLGPKGKKQKNMRDLSPTDIY---------------EYAAEDADITLRLKN 502

Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              E  L  +   +   G  +D + +    ++  +  K+ +++I 
Sbjct: 503 VLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIY 562

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
           K       +      +   LF    I D    ++     T + +L            ILN
Sbjct: 563 KEAGEEF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILN 621

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L + ++   G +  +      + TGR S      QN+P        
Sbjct: 622 YRGMKKLLSTYIDALPKLINPRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP-------- 672

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R C I  +G     AD + IE R++A ++ ++  +
Sbjct: 673 ----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMM 716

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G DI+  T AK ++  IDKV+  QR   K                      G+  
Sbjct: 717 EAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANF--------------GIIYGITT 762

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              +Q +   +                                 + + + +      V  
Sbjct: 763 YGLAQRMDIPNG------------------------------EAKELIEGYFRTFPKVQV 792

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   E                                       RR   +D+    + 
Sbjct: 793 YMEHAKEVARAKGYAETLFH--------------------------RRRYLADINSRNA- 825

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
             T      R            +Q    DI+   M    +          ++L VHDE+ 
Sbjct: 826 --TVRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELN 877

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                     V  +    M         +PL A+    K +
Sbjct: 878 FSVFPEEREQVERIVIEEMQNAYP--LNVPLIADAGWGKNW 916


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 190/694 (27%), Gaps = 151/694 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----PSDLLQ 59
              D ET S   L           A I       +          E   +       L  
Sbjct: 356 FSFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRP 405

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
              D  +  V  N  ++  +  +  GI++   +   T +        L  ++       L
Sbjct: 406 LFADTAIGKVGQNMKYDIQVLSRY-GIEVRG-QLFDTMIAHYLLFPDLRHNMDEMAETLL 463

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +         G        +                   Q   +Y   D + T +L++R
Sbjct: 464 GYCTVHYSDLVGSDKQEVHIR---------------QVPLQNLADYAMEDADITWQLYER 508

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L  +             E  L  +   +   G ++D +++ +    + +E ++++++I +
Sbjct: 509 LNAMLSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYR 568

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
           L  G   +      +   LF    I +    ++     T + IL           LIL+ 
Sbjct: 569 LA-GHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDY 627

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     +  L E    DG+L  +     A+ TGR S      QN+P          
Sbjct: 628 RGIKKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP---------- 676

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R+  +   +    + AD + IE R++A ++ ++  I+
Sbjct: 677 --------------IRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQ 722

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +GEDI+  T +K +  P+ +V+ + R   K     + Y               L++ 
Sbjct: 723 AFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYG-----ISAFGLSERLNIS 777

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +          F  +   +++      +         L G    L         + +   
Sbjct: 778 RTEAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFL---------RDINSA 828

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +               +                          +L    +  + +  
Sbjct: 829 NAVVRGYAERNAINAPIQGSAADLI---------------------KLAMIRIHEEITER 867

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                                 K    ++L VHDE+        
Sbjct: 868 --------------------------------------KLRSRMILQVHDELNFNVLRPE 889

Query: 641 YFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  L    M      +  +PL AE  E   +
Sbjct: 890 AAEVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 188/696 (27%), Gaps = 154/696 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----LLQ 59
             +D ET S              +A +   + +   +       + +   P      L  
Sbjct: 379 FALDTETTSLNTF----------EAELVGISISVKPQEAVFIYCSPEGLKPEKALSILKP 428

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116
            L +  +     N  ++ ++ K   GI +    +  T + +         +L +     L
Sbjct: 429 VLENPAIEKWGQNLKYDILVLKNY-GIQLAPTGF-DTMLASYVINPEETHNLDDLAQRHL 486

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +         G             + P            +    Y  +D +    L   
Sbjct: 487 QYRTTTYSELCGTG---------KKAVPLR------QVPLEALKNYACQDADIALRLQNT 531

Query: 177 LIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L                 E  L  +   +  RG  +D   + K    +A     L E I 
Sbjct: 532 LEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIY 591

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
                   +      L   LF   G+     ++    T   +L    +       IL   
Sbjct: 592 ATAGSTF-NIDSPKQLGEILFTRLGLPAKKTTKTGYSTNVQVLEELAMIHPIAQDILEYR 650

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           +        +  L + ++   G+L  +   +  + TGR S      QN+P          
Sbjct: 651 SLQKLRSTYIEALPKILNPATGKLHTSFNQH-ITATGRLSSSNPNLQNIP---------- 699

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   IAS     L+ AD + IE R+ A ++G+   I+
Sbjct: 700 --------------IRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIE 745

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF N EDI+  T    F+T  + V+ + R   K +   + Y       +       L++ 
Sbjct: 746 AFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYG-----IQPYGLSMRLNIS 798

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           Q        +    +         +  Q  E      L+G    +     R  +      
Sbjct: 799 QKEAKAIIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGN------ 852

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              + +                                                      
Sbjct: 853 ---IRKAAERAAMNTPVQGTAADIIK---------------------------------- 875

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                       Y   L EN +Q               K    ++L VHDE+V ET +  
Sbjct: 876 ------------YAMCLIENTMQ-------------EHKMHSTMLLQVHDELVFETNEEE 910

Query: 641 YFSVGT-LCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
           +  + T + + M +       K +P++ +    K +
Sbjct: 911 HEKLETMVVASMKEAALVCGLKQVPVEVDTGIGKNW 946


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/694 (15%), Positives = 188/694 (27%), Gaps = 135/694 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 352 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQLDLQD 401

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459

Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L       +   GK    I         +  Y    A+     +      + D 
Sbjct: 460 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 518

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +   E+++++      E  +  +   +   G +ID   + +    +  E  KL+++    
Sbjct: 519 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 571

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281
                 +      L+  LF   GI        ++    T +++L           +IL  
Sbjct: 572 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 630

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            + +       + L E +S  DGR+  T     A  TGR +      QN+P         
Sbjct: 631 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 680

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR    A  G  +V AD + IE R++A ++G+   I 
Sbjct: 681 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 725

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF NGED++  T A+ F    + VS EQR   K +   L Y  G            L + 
Sbjct: 726 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 780

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S        F  +     +    ++Q       + L G    L           +   
Sbjct: 781 NISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNK 831

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +   G                     ++            P    L            
Sbjct: 832 NTNARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS---------- 881

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                                            M         +VL        E  +T 
Sbjct: 882 ------------------------------KLIM-QVHDE---LVL--------EVVETE 899

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   L  +M K       +PL AE    + +
Sbjct: 900 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 194/676 (28%), Gaps = 142/676 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
              D ET S               A +   ++++                   +      
Sbjct: 392 FCFDTETTSLD----------TTDAELVGLSFSYLAGEAFYIPVPADRQQAEEIVGYFRA 441

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116
              +E +  +  N  ++ ++ K   GI++  K    T +            +       L
Sbjct: 442 VFENENIEKIGQNIKYDMLVLKNY-GIEVHGK-LSDTMLAHYLLEPDKRHGMDILAASYL 499

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+         GK    +      D    + T+     A   F  +     E  +    +
Sbjct: 500 NYEPVSITSLIGKKGGKQGNM--RDVAIPEITQYAGEDADITFQLHSIFSRELPKVNAAK 557

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E  L  +  ++ + G R+D++ + ++  ++  + ++ + +I +   G   +  
Sbjct: 558 LFN--EVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAA-GQSFNIS 614

Query: 237 QTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L   LF    + +    ++     T + ILS      L    IL+           
Sbjct: 615 SPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYRELQKLKSTY 674

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   VSS  GR+  +     A  TGR S      QN+P                   
Sbjct: 675 VDALPTMVSSRTGRIHTSYNQAVA-ATGRLSSTNPNLQNIP------------------- 714

Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +  +   +++ AD + IE R++A  +G+    +AF  G DI+
Sbjct: 715 -----IRTPRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEAFNQGRDIH 769

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            TT +K F  P+++V+ + R   K++                    G+            
Sbjct: 770 ATTASKVFQVPLEEVTSDMRRKSKMVNF--------------GIIYGIS----------- 804

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A +  +       + +A+  +   V      +     
Sbjct: 805 -------------------AFGLAQRLGIPRGEASEIIRAYFEEFPAVKGYMDKVVNDAR 845

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+        T      R
Sbjct: 846 EREYVETIL--------------------------GRRRYLPDINSRNQ---TNRGYAER 876

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + D++   M N        K    ++L VHDE+V +   +    
Sbjct: 877 NAINAP------IQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVFDAHYSEIDL 930

Query: 644 VGT-LCSLMTKNPSWA 658
           +   +  LM      A
Sbjct: 931 LKERVDELMRNAIPMA 946


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 107/696 (15%), Positives = 201/696 (28%), Gaps = 152/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
           + +D ET S +P+           A +   + A+                    + + S 
Sbjct: 411 IGLDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKSS 460

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114
           L  +L +  +  +  N  +++ +F    GI +         + +      L   L     
Sbjct: 461 LQPFLENPQLGKIGQNMKYDQHVFANH-GIALQGIS-GDAMLASYIVESHLGHGLDELSE 518

Query: 115 A-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L       +   GK    I         +  Y C  A+     +        D +   
Sbjct: 519 RWLQLPTITYESLCGKGAKQIPFADVPLDKAAEYACQDADFALRIEQHLRTQMDDKQLAM 578

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  +  +   +   G  ID + + +    + +E  +L+ +   L    
Sbjct: 579 --------YQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFALAGKP 630

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASS 285
             +      L+  LF   G+    + +       T +S+L           LIL   + +
Sbjct: 631 F-NLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQHRSLA 689

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  + L E +    GR+        A  TGR +      QN+P             
Sbjct: 690 KLKSTYTDKLPEMILPATGRVHTNYAQAVA-ITGRLASNNPNLQNIP------------- 735

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR    A  G+ +V AD + IE R++A ++G+     AF N
Sbjct: 736 -----------IRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAFQN 784

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            ED++  T A+ F  P + ++ EQR   K +                    G+     ++
Sbjct: 785 NEDVHRRTAAEVFGVPPEHITAEQRRYAKTIN--------------FGLIYGMSSFGLAK 830

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            +   +                                 E+  K + A++ GV +  +  
Sbjct: 831 ALGIDNMS------------------------------AEMFIKRYFARYTGVAEYMERT 860

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E    +                            +     RRL   D+ G       A 
Sbjct: 861 KEQARSLGY--------------------------VETLFGRRLYLPDIHGSAIRRAAAE 894

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
              +             +Q  + D++   M               +V+ VHDE+V + P+
Sbjct: 895 RAAINA----------PMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPE 944

Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   L   M+        +PL AE    K +
Sbjct: 945 DELAHIKAQLPQWMSDVGEGVLAVPLLAEVGAGKNW 980


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 108/710 (15%), Positives = 190/710 (26%), Gaps = 155/710 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------SA 52
           + +D ET    P            A +      W      +       Q           
Sbjct: 392 VAVDTETTDLNPFK----------AQLVGIGVCWGPWLSDLAYIPVGHQAPEGSQLPLEV 441

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           +   L  +L          N+ ++R+         +     + T +           SL 
Sbjct: 442 VLEQLAPWLSSPKHPKALQNAKYDRL--ILLRHGLLLGGVVMDTLLADYLRDAAAKHSLD 499

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                    +  +     GK    +                           YC  DV  
Sbjct: 500 VMAERDYGITPTVFSDLVGKPKDGKAS-------------CFAEVPIDQAALYCAMDVHL 546

Query: 170 TRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           TR+L   L                  E  L  +   +   G RIDL  +  L + + +  
Sbjct: 547 TRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTYLDTLSKEMGETL 606

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQ 272
            +L+ +  +       +      L   LF   G+D            T  ++L       
Sbjct: 607 TRLEANAKQAAGVDF-NLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDH 665

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L     S      ++ L + V +  GR+         + TGR S      QN+P
Sbjct: 666 PVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIP 724

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                        S  +R   +      L+ AD + IE R+L  
Sbjct: 725 ------------------------IRTEYSRRIRKAFLPQEHWTLLSADYSQIELRILTH 760

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++GE+   +A+ +G+D++  T         D+++ ++R +GK +   + Y  GA+ F   
Sbjct: 761 LSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLGKTINFGVIYGMGAQRF--- 815

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                  + Q       +   E + +  +     +         + ++G           
Sbjct: 816 --ARETGVSQAEAKEFLSKYRERYPKVFAFLELQERLALSRGYVETILGRRRPFHFDR-- 871

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                                                L     K    I L  +RR    
Sbjct: 872 -----------------------------------NGLGRLLGKDPFEIDLDVARR---- 892

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625
                        +Q +R            +Q  S DI+   M               ++
Sbjct: 893 ---------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQQSLPARLL 937

Query: 626 LTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           L VHDE+V E   +    V  L  S M         +PL AE      + 
Sbjct: 938 LQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVAETGSGSNWM 985


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 187/701 (26%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +         T              +
Sbjct: 359 FAFDTETTSVHYMK----------AELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWV 408

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L  +T+  +  N  ++  +      I +    +  T + +          ++ 
Sbjct: 409 LAQLKPLLESKTIKKIGQNLKYDANVLS-HYDIALQGIEF-DTMIESYCYNSVATRHNMD 466

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L++     +   GK                      +    +  G Y   D + 
Sbjct: 467 ALALKYLDYQTVHFEDVAGKGAKQL---------------TFNQIDIEKAGHYAAEDADI 511

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   + P             + E  L  +   +   G  ID D++ +    + Q   
Sbjct: 512 TLRLHHAIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLD 571

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+ +   L  G   +      L+  LF    I         +  T + +L    +    
Sbjct: 572 ELEIEAHNLA-GKSFNLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEVLQELALDYPL 630

Query: 275 KDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL     S       + L   V     RL  +      + TGR S      QN+P  
Sbjct: 631 PKVILENRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAV-TATGRLSSTDPNLQNIP-- 687

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   IA    K+V  D + IE R++A ++
Sbjct: 688 ----------------------IRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLS 725

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF+ G+DI+  T A+ F   + +V+ +QR   K +   L Y            
Sbjct: 726 NDKGLVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMS-----AFGL 780

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +          F+ +    ++    + Q  E    + L G    L     +  
Sbjct: 781 AKQLHIGRQQAQEYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNG 840

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            +      K           +G +    + A +        + D  I             
Sbjct: 841 MRK-----KAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRI------------- 882

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH-DEI 632
                                                   M         ++  +H D  
Sbjct: 883 -------------------------------------KMTM-QVHDE---LIFEIHQD-- 899

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + E       +   L +LM         +PL AE      +
Sbjct: 900 IVE------ETTAKLVTLMNDAVE--LSVPLIAEAGIGDNW 932


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 107/692 (15%), Positives = 186/692 (26%), Gaps = 138/692 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           K+ ID ET S            A  A +   + A+                         
Sbjct: 352 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F     I +       + + +      L   L 
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIA-GDSMLASYIIESHLGHGLD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                + T  +   A +L      +    
Sbjct: 460 ELSERWLGLETITYESLCGKGAKQISFADVAIGQATEYTAQDADFALRLEAHLRAQMDAK 519

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 520 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 573

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 574 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYALPKIILQNRS 632

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +   DGR+  T     A  TGR +      QN+P           
Sbjct: 633 LAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 680

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 681 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 727

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F    + VS EQR   K +   L Y  G            L +   
Sbjct: 728 QNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 782

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 783 SAKTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNT 833

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++               R L    +K        
Sbjct: 834 NARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLDLDGLK-------- 873

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL        E P     
Sbjct: 874 ---------------------------TKLIM-QVHDE---LVL--------EVPKAELD 894

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE      +
Sbjct: 895 LVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 115/690 (16%), Positives = 205/690 (29%), Gaps = 132/690 (19%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQS-------AMPSDL 57
           D ET +  P            A +      W   P  V       +           + L
Sbjct: 361 DTETTALNP----------RDAALVGLGCCWGAAPDQVAYLPLGHKEGQNLPLEETLAAL 410

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L  +    V  N+ F+R++  +  GI +       T + +         +LK+ C  
Sbjct: 411 RPILEGDRYPKVLQNAKFDRLVL-RFQGIQLRGV-VFDTMLASYVINPEASHNLKDLCQR 468

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L       +   GK           D  P    +   +     +    K + + T  L 
Sbjct: 469 YLPLQAQSYRTLVGKDQ------TLADLSPATVAQYCGLDVHTTYLLKEKLEADLTPRLR 522

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +    L + E  L  +   +   G RID D + +L + + Q+   L +           +
Sbjct: 523 QL---LLEVELPLEPILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDAVGQPF-N 578

Query: 235 SRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
                 L   LF   G+D     +      T  + L          DLIL+    +    
Sbjct: 579 LASPKQLSELLFGTLGLDTKKTHKTKLGYSTDAATLEKLRGDHPVIDLILSHRTLAKLKS 638

Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V  D GR+         + TGR S      QN+P                 
Sbjct: 639 TYVDVLPTLVRPDTGRVHTEFNQAV-TATGRLSSSSPNLQNIP----------------- 680

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                       S  +R   I   G  LV AD + IE R+LA ++ E   + A+  G D+
Sbjct: 681 -------IRTEFSRQIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLAAYQEGADV 733

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F      +S  +R +GK++   + Y  G + F   A      +      V  
Sbjct: 734 HRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQRFAREA-----GVSVAEAKVFI 786

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              +  + +   +   M+         + ++G       ++                   
Sbjct: 787 QRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAFES------------------- 827

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                              + +  +    +  V PS  +            ++     L+
Sbjct: 828 ----------------RELQSLRGKPLDVLADVDPSKLK------------MSNYERGLL 859

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSV 644
           R            +Q  S DI+   M             ++L VHDE+V E     +  +
Sbjct: 860 RAAANAP------IQGSSADIIKCAMVKLAPLLPPEKARLLLQVHDELVLEMTPEAWEHL 913

Query: 645 G-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             T+  +M+        +PL  + Y A  +
Sbjct: 914 QTTIPEVMSTAVP--LSVPLAVDIYAAANW 941


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQY 60
           +   D ET     +             I   + A +          E++       +   
Sbjct: 388 EFCFDTETTG-FDIF---------NDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPL 437

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALN 117
             ++ +  +  N  F+ ++  + LG++I  +++  T +L          ++       LN
Sbjct: 438 FENDRIAKIGQNIKFDLMVL-RQLGLEIRGRKY-DTMILHYLLDPESRHNMNALAEKYLN 495

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +     +   GK                       +   +   EY   D + T  L   L
Sbjct: 496 YKPIEIETLIGKGSKQL---------------TMDLVNVERVKEYAAEDADVTLRLKHAL 540

Query: 178 IPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            P  +           E  +  +   I   G RID + +      +++   +L+  I + 
Sbjct: 541 YPQIEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEE 600

Query: 228 TDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282
                 +      L   LF    I +   M++     T +  L          DLIL   
Sbjct: 601 AGESQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILEYR 660

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                    +  L + V+   GR+  +      + TGR S      QN+P          
Sbjct: 661 GVKKLLSTYVEALPQLVNRRTGRIHTSFNQAV-TATGRLSSTNPNLQNIP---------- 709

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I       L+ AD + +E R++A ++G++  I 
Sbjct: 710 --------------VREEMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIA 755

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AFA+GEDI+  T AK FN  +D+V+ E+R   K                      G+   
Sbjct: 756 AFAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANF--------------GIIYGISAF 801

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             SQ ++                              +     + +   + A +  V + 
Sbjct: 802 GLSQRLE------------------------------IPRKEAKEIIDGYFASYPKVQEY 831

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++                                   +     RR   +D+    +  
Sbjct: 832 MDNVVAKAKEEG--------------------------FVSTIFGRRRYLNDIASHNAIA 865

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                +               +Q  + DI+   M N  +          ++L VHDE+V 
Sbjct: 866 RGLAERN---------AVNAPIQGSAADIMKIAMINVHRRFAAEGIRSKVILQVHDELVV 916

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +    V  +    M      A  + L  +      +
Sbjct: 917 DMLRSEQERVVAIVTEAMESAA--ALKVRLVVDYGVGGNW 954


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 97/702 (13%), Positives = 190/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58
            + ID ET S   +           A +   +++ +++                +     
Sbjct: 349 FVSIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
                + +M +  N  ++  +  +  G+ +  K +  T +        L  ++       
Sbjct: 399 PLYESDKIMKIGQNIKYDYEVLTRY-GVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETL 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L++     +   G K    +  +    +  Y               EY   D + T  L 
Sbjct: 457 LSYQTIHIEELLGPKGKKQKNMRDLSPTDIY---------------EYAAEDADITLRLK 501

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P              E  L  +   +   G  +D + +    ++  +  K+ +++I
Sbjct: 502 NVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            K       +      +   LF    I D    ++     T + +L            IL
Sbjct: 562 YKEAGEEF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N           ++ L + ++   G +  +      + TGR S      QN+P       
Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I   G     AD + IE R++A ++ ++  
Sbjct: 673 -----------------VRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF  G DI+  T AK ++  IDKV+  QR   K                      G+ 
Sbjct: 716 MEAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANF--------------GIIYGIT 761

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               +Q +   +                                 + + + +      V 
Sbjct: 762 TYGLAQRMDIPNG------------------------------EAKELIEGYFRTFPKVQ 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +   E                                       RR   +D+    +
Sbjct: 792 AYMEHAKEVARAKGYAETLFH--------------------------RRRYLADINSRNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
              T      R            +Q    DI+   M    +          ++L VHDE+
Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M         +PL A+    K +
Sbjct: 877 NFSVFPEEREQVERIVIEEMQNAYP--LNVPLIADAGWGKNW 916


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 210/702 (29%), Gaps = 158/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54
               ID ET S  P           +A +   + +  +        +   A       + 
Sbjct: 318 KTFSIDTETTSLDPF----------EAKLVGISISTMEGKAYYIPVSHFGAKNISKSLID 367

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L Q L+++    V  N  F+  +FK ++G   P+     T + A              
Sbjct: 368 KFLKQILQEKDYNIVGQNLKFDYEIFK-SMGFS-PNVPHFDTMIAAYLLNPDE------K 419

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             N  E   K   G  +I+     + + P +    +      +   EY   D + T  +F
Sbjct: 420 RFNLEELSLKYL-GYKMISFDELVNENVPLFGNDFSYVP--LERAVEYSCEDADVTYRIF 476

Query: 175 KRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++L              + E  L  +   +   G   D + + +L +   ++   + E +
Sbjct: 477 RKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMDGIKEKV 536

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILN 280
            ++  G   +   +  +   LF    I     +      T   +L   +       L+L 
Sbjct: 537 FEIA-GETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNAEVLEELSKEHEIAKLLLE 595

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++++  +++    R+  T    G + TGR S      QNLP        
Sbjct: 596 YRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTG-TSTGRLSSSNPNLQNLP-------- 646

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R  +        ++ AD + IE RVLA ++ ++  
Sbjct: 647 ----------------TRSEEGKEIRKAVRPQRQDWWILGADYSQIELRVLAHVSKDENL 690

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           +KAF +  DI+  T AK F      VS++ R +GK++  A+                G+ 
Sbjct: 691 LKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAII--------------YGVS 736

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               S+ +                               L  +  + +   +   ++GV 
Sbjct: 737 PYGLSKRI------------------------------GLSVSETKKIIDNYFRYYKGVF 766

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +  K + +                                       RR     ++    
Sbjct: 767 EYLKRMKDEARKKGYVTTLF--------------------------GRRRYIPQLRSKNG 800

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
                  ++              +Q  + DI+   M N             ++L VHDE+
Sbjct: 801 NRVQEGERI---------AVNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDEL 851

Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           V E PD     V  +    M         +PLK + Y  K +
Sbjct: 852 VFEVPDNELEFVKDIVKDEMENAVK--LDVPLKVDVYCGKEW 891


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 107/688 (15%), Positives = 197/688 (28%), Gaps = 134/688 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDL 57
             + +D ET S              +A +   + A +    +     +    +      L
Sbjct: 371 RHIAVDTETTSLDTF----------EAELAGISIAVETGKARFISFAQSALDRDKTVEIL 420

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L + ++  +  N  ++ ++ KK  GI++    +  T + +         +L +    
Sbjct: 421 KPLLENPSLPKIGQNLKYDMLVLKKY-GIELSPVAF-DTMLASYVLNPEEKHNLDDLAAH 478

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY-CKRDVEATREL 173
            L +         G     +           D    +   A QL G +  K D E     
Sbjct: 479 HLGYRTTTFDELVGTGKTKQHIFEVDPEKLSDYACQDADLALQLEGVFRKKLDGETEL-- 536

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              L    + E  L  +   +   G  ID   + K  E + +E  +L  + +    G   
Sbjct: 537 ---LWLCENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKEL-ELLTETIYAAAGSAF 592

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF +  +     ++    T   +L            +L   +       
Sbjct: 593 NIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYRSLQKLKST 652

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + V+   GRL  T   +  + TGR S      QN+P                  
Sbjct: 653 YIDALPKMVNPLTGRLHTTFNQF-ITATGRLSSSNPNLQNIP------------------ 693

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   I S     L+ AD + IE R+ A I+G+   ++AF N EDI
Sbjct: 694 ------IRSPLGKEIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLEAFRNREDI 747

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F+T  D+++ + R   K +   + Y               L++ Q       
Sbjct: 748 HTATAKVIFDT--DEITSDMRRKAKEVNFGVLYG-----IMPFGLSRRLNIPQKEAKAII 800

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +         +     E      ++G    L     R  +         L +  
Sbjct: 801 DTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTN---------LKKAA 851

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                              +NT      
Sbjct: 852 ERA-----------------------------------------------AMNTPIQG-- 862

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  K   N+    SR      M++       ++L VHDE++ ET D     +  L 
Sbjct: 863 -TAADIIKCAMNLC--SSR------MRHL-NMKSVMLLQVHDELLFETTDAEKEPLSKLV 912

Query: 649 SL-MTKNPSWA--KGLPLKAEGYEAKRY 673
              M         K +P+  +    K +
Sbjct: 913 EQAMIDAAIRCGLKNVPVLVDTGIGKNW 940


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 188/692 (27%), Gaps = 139/692 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L + T+  +  N  +++ +F     I +         + +      L   L 
Sbjct: 403 VLGRLKPHLENPTLKKIGQNLKYDQHVFANY-DIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL++       
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L E +S  DGR+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F    + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNI 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++  R+     I                      
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNWLSDGI---------------------- 872

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL    E+V    +T   
Sbjct: 873 ---------------------GS-----KLVM-QVHDE---LVL----EVV----ETELD 894

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 104/706 (14%), Positives = 209/706 (29%), Gaps = 156/706 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSAM 53
               D ET S  P+          QA +   + A                         +
Sbjct: 380 YFSFDTETTSLDPM----------QAKLVGFSLALQPNKAAYIPLEHIEGGNDLFGGERI 429

Query: 54  PSD---------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                       L   L ++ V+ +  N  ++ ++ ++    DI  + +  T +L+    
Sbjct: 430 VGQIETQRALALLKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDTMLLSYVLD 486

Query: 105 LP---SSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157
                  +       L  +    K     GK +++        +  Y    A+  ++ WQ
Sbjct: 487 AGISTHGMDVLSERWLGHTPIAYKNLTCDGKKIVSFAQVDLKQATLYAAEDADITLRLWQ 546

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +             ++++RL      +R L  +   + +RG  +D  ++  L   +AQ  
Sbjct: 547 VLKPQLVAQGMT--KIYERL------DRPLIEVLARMEERGILVDRQILSCLSGELAQAA 598

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NIT 271
             L+E+I +L  G   +      L   LF   G+     ++     T   IL        
Sbjct: 599 LSLEEEIYQLA-GEQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSAQILEELAAEGH 657

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            L + ++  R  +   +    + L   +S   GR+         + TGR S      QN+
Sbjct: 658 MLPRKIVDWRQIAKLKST-YTDALPSYISPKTGRVHTNYSLAT-TSTGRLSSSEPNLQNI 715

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                           +    +R+  IAS G  L+ AD + IE R+LA
Sbjct: 716 P------------------------IRTIEGRKIRTAFIASEGCLLLSADYSQIELRLLA 751

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AFA G+DI+  T ++ F   I+++S + R   K +   + Y         
Sbjct: 752 HIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYG-----ISA 806

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L + +   +      FE +   +S+    +    +    + + G          
Sbjct: 807 FGLANQLGISREEASHYIRVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIH------ 860

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
              +  +    + +               +                              
Sbjct: 861 ---YPEIKARDRQVRAFNERAAINAPIQGSA----------------------------- 888

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                    +      L +E              +S     + +               D
Sbjct: 889 --ADIIRRAMIQMEGALEKE-------------GLSA----KMLLQVH-----------D 918

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
           E++ E P         +   +M     P+ +  +PL+ +   A+ +
Sbjct: 919 ELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEVKVMVAQNW 964


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 195/696 (28%), Gaps = 153/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET     L           A +   +++++          E       +      
Sbjct: 378 VCFDTETTGIDAL----------NAELVGMSFSFEKGKGFYVPFPEDQEEAQTLIEKFRP 427

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +  +E +  +  N  ++  +      + +  K    T +           ++       L
Sbjct: 428 FFENENIEKIGQNMKYDLKILSNY-NMQVKGK-LFDTMIAHYLINPDMRHNMDVLSETYL 485

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            ++    +   GK    +                      +   EY   D + T +L + 
Sbjct: 486 KYAPKSIETLIGKKGKNQLS--------------MRDVPLEDIKEYATEDADITFQLKEH 531

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P+ +           E  L  +   +   G R+D++ +  +   + +E    ++ I +
Sbjct: 532 FQPILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYE 591

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILN 280
                  +      L   LF    I              T + +LS+          IL 
Sbjct: 592 TAGEKF-NLASPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLSYLANEHQIVRDILE 650

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   V    GR+        A  TGR S      QN+P        
Sbjct: 651 WRQMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVA-ATGRLSSTNPNLQNIP-------- 701

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   IA      L+ AD + IE R++A + GE+  
Sbjct: 702 ----------------IRTEKGRLIRKAFIARDENYTLLSADYSQIELRIIAALCGEENM 745

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           IKAF N EDI+ +T AK FN P+D+V+KEQR+  K +   + Y                +
Sbjct: 746 IKAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVS-----AFGLSNQTN 800

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           L +        + ++ + + +S      D   E    + + G          R   + + 
Sbjct: 801 LSRKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGR---------RRYLKDIN 851

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +  G            +                          ++   ++    +
Sbjct: 852 SANAIVRGGAERNAVNAPIQGSAADII---------------------KIAMINIHKKLT 890

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N                                          ++L VHDE+V +  +
Sbjct: 891 SENW--------------------------------------KSKMLLQVHDELVFDVHN 912

Query: 639 TPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    +   +   M      A  +PL  E    K +
Sbjct: 913 SELEKIQPMIKHEMENAFKMA--VPLDVEIGLGKNW 946


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 107/692 (15%), Positives = 189/692 (27%), Gaps = 139/692 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                +    +   A +L      +  E 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E+++++      E  +  +   +   G +ID   + +    +  E  KL+++      
Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283
               +      L+  LF   GI        ++    T +++L           +IL   +
Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +       + L + +S  D R+  T     A  TGR +      QN+P           
Sbjct: 634 LAKLKSTYTDKLPDMISPQDNRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                VR    A  G  +V AD + IE R++A ++G+   I AF
Sbjct: 682 -------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NGED++  T A+ F T  + VS EQR   K +   L Y  G            L +   
Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           S        F  +     +    ++Q       + L G    L           +     
Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +   G                     ++  R+     I                      
Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNWLSDGIDS-------------------- 874

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          M         +VL    E+V    +T   
Sbjct: 875 ----------------------------KLVM-QVHDE---LVL----EVV----ETELD 894

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L  +M K       +PL AE    + +
Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 184/701 (26%), Gaps = 156/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           ++ ID ET S            A  A +   + A++                        
Sbjct: 354 RIGIDTETTSLD----------AMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQLDLQD 403

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
               L  +L + ++  +  N  +++ +F    GI +         + +      L   L 
Sbjct: 404 TLGRLKPHLENGSLKKIGQNLKYDQHVFANY-GIALRGIA-GDAMLASYIVESHLGHGLD 461

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A +   EY  +D + 
Sbjct: 462 ELSERWLGLPTITYESLCGKGAKQ---------------ISFADVAVEQAAEYAAQDADF 506

Query: 170 TRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G  ID   +      +     KL
Sbjct: 507 ALRLEAHLRAQMDEKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKL 566

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLA 274
           +E   +       +      L+  LF   GI    + +       T +++L         
Sbjct: 567 EEQAFQTAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPL 625

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E ++   GR+  T     A  TGR +      QN+P  
Sbjct: 626 PKIILENRSLAKLKSTYTDKLPEMINPRTGRVHTTYSQAVA-ITGRLASSNPNLQNIP-- 682

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 683 ----------------------IRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLS 720

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   + AF NGED++  T A+ F    + VS EQR   K +   L Y  G         
Sbjct: 721 GDKTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 775

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    +++       + L G    L        
Sbjct: 776 AKSLGIDNLSAKNFIDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYL-------- 827

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                                              
Sbjct: 828 -PDIRAKNANARAGAERAAINAPMQGTASDLI---------------------------- 858

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                      +   R  + G +                 M         +VL    E+V
Sbjct: 859 ------KRAMIAVSSRLHSDGLES-------------KLIM-QVHDE---LVL----EVV 891

Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               +    +V   L  +M +       +PL AE      +
Sbjct: 892 ----ENELETVKEMLPQVMAEVAQGRLNVPLLAEVGVGGNW 928


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 193/702 (27%), Gaps = 165/702 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58
            L +D ET S   +           A +   +++ +++       +        M +   
Sbjct: 349 ILSLDTETTSVDAI----------DAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFK 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E ++ V  N  ++  + KK  GI +  K    T +        L  ++       
Sbjct: 399 PLYENEEILKVGQNIKYDYEVLKKY-GITLKGK-LFDTMIAHYLIQPELHHNMDYMAETL 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           LN+     +   G K    +  +    +   D               Y   D + T  L 
Sbjct: 457 LNYQTVHIEDIIGPKGKKQKNMRDLAPAEVSD---------------YACEDADITLRLK 501

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L P            + E  L  +   +   G R+D + + +   +  +   K + +I
Sbjct: 502 NALEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEI 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
            +L  G   +      +   LF    I +    ++     T + +L          + IL
Sbjct: 562 YELA-GETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKIL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L + V    G +  +      + TGR S      QN+P       
Sbjct: 621 EYRGIKKLLSTYIDALPKLVKPQTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R C I         AD + IE R++A ++ ++  
Sbjct: 673 -----------------VRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENM 715

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF  G DI+  T AK ++  ++ V+  QR   K                      G+ 
Sbjct: 716 MEAFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQAN--------------FGIIYGIT 761

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               +Q +   +                                 + +   +      V 
Sbjct: 762 TYGLAQRMDIPNG------------------------------EAKELIADYFKTFPKVQ 791

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              ++  E                                       RR   +D+    +
Sbjct: 792 AYMEEAKEVARRKGYAETIFH--------------------------RRRYLADINSRNA 825

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
              T      R            +Q    DI+   M N  +          ++L VHDE+
Sbjct: 826 ---TVRGFAERNAINAP------IQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDEL 876

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      V  +    M     +   +PL A+    K +
Sbjct: 877 NFSVYPEEKELVERIVLEEMQNA--YQLRVPLIADAGWGKNW 916


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 187/702 (26%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLL 58
            ++  D ET   QPL           A +    +    +            +  +   + 
Sbjct: 327 KQICFDTETTDIQPLK----------AELVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVK 376

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-L 114
               +  +    HN  ++  + +   GI I +  +  T + +          SL+     
Sbjct: 377 PLFENSAIGFYGHNVKYDWHVLQN-EGIQIQNICF-DTILASYILNAHSRQHSLEVLALE 434

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                        GK       +                   +   EYC  DV+ T  L 
Sbjct: 435 YFGKVTIPISELIGKGKNVLSMRDV---------------PIERVTEYCCEDVDFTCRLK 479

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           + L                E  L ++   +  RG  +D+  + +L + + QE K L E I
Sbjct: 480 EVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQLSKELTQELKTLQESI 539

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
             +      +      +   LF+  GI     +     T   +L            IL  
Sbjct: 540 YTMAGEEF-NLNSPKQVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAGKILEY 598

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     ++ L   V     R+  T     A  TGR S      QN+P         
Sbjct: 599 RLLEKLRSTYVDALPSQVIPRTHRIHSTFNQSVA-ATGRLSSQDPNLQNIP--------- 648

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R        G   + AD + IE R+LA ++ +   +
Sbjct: 649 ---------------IRTEEGRKIRGAFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLM 693

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF N EDI+  T A  F  P+++VSKEQR   K +   +                    
Sbjct: 694 AAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGII------------------- 734

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                       Q    A +  +           +  ++  + +
Sbjct: 735 -------------------------YGQQAFGLARELGIEVKQASKFITMYFQRYPKIKE 769

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                 E      +                                R  +  ++      
Sbjct: 770 YLDQSKENARATGKSVTLT--------------------------GRERIIPEILSKNMQ 803

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
           +  A  +L              +Q  + D++   M    +          ++L +HDE++
Sbjct: 804 IRAAAERL---------AVNTPLQGTAADLIKMAMLKMDEEIEKQHLKGFMILQIHDELI 854

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
            E PD        L   +M         + L  +    K ++
Sbjct: 855 FEIPDEEISLFSQLVPEVMQSVM--LLNVSLVVDINIGKNWK 894


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 112/710 (15%), Positives = 200/710 (28%), Gaps = 168/710 (23%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE-------QSAMPSDL 57
           D ET + +P            A +      W  E                  Q  + + L
Sbjct: 391 DTETSALEP----------RDAALVGIGCCWGTETDASAYIPLAHTKGENLNQDIVLAAL 440

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L          N+ F+R++F    GI++         + +         +L +    
Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINLTGV-VFDPMLASYVLNPDTSHNLTDLTQR 498

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L  +         K                   +            YC   V AT +L 
Sbjct: 499 YLGLTIQNYVDLVPKG------------------KTIADINISAVANYCCLQVYATFQLV 540

Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +L               + E+ L  +  T+   G RI+   + +L + +  +  KL E 
Sbjct: 541 AKLREELAKTPNLDKLLREVEQPLESVLATVEYTGVRINSAYLHELSQQLEIDLAKLQEQ 600

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLA 274
             +L      +      L   LF   G+                 TL+  L   + T   
Sbjct: 601 ATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEK-LQEVDDTGFV 658

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I  R   S      ++ L   V  D  R+        A+ TGR S      QN+P  
Sbjct: 659 NAIIEYR-TLSKLKSTYVDALPALVRPDTQRVHTDFNQT-ATSTGRLSSSNPNLQNIP-- 714

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      S  +R   +  +G  +  AD + IE R+LA ++
Sbjct: 715 ----------------------IRTAFSRQIRKAFLPESGWLMAAADYSQIELRILAHLS 752

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            E   ++A+   EDI+  T    F    + V+ ++R I K +   + Y  G+  F     
Sbjct: 753 QEPLLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLKF----- 805

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                + +   N       E + +  ++   ++ Q       + ++G             
Sbjct: 806 SRSTGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFDFTNN--- 862

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                                                             S R+L  S  
Sbjct: 863 --------------------------------------------------SLRKLKGSKP 872

Query: 574 K----GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIV 625
           +         L    + L+R            +Q  S DI+   M    +        ++
Sbjct: 873 EDIDLSKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLL 926

Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           L VHDE+V E P   +  +   + S+M         +PL  +    + + 
Sbjct: 927 LQVHDELVFEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 188/703 (26%), Gaps = 139/703 (19%)

Query: 2   SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSAMPS--- 55
            ++  +D ET S  PL           A +    +   +E   +       QS       
Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQ 429

Query: 56  --------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-- 105
                   +L  ++          N  F+R +F    G+++    +  T +         
Sbjct: 430 LAIEDVFLNLRTWIESPEKEKTLQNCKFDRQIFYNH-GLNLSGVTF-DTLLADYILNNQE 487

Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              L   C     F     K   GK       K          +       +  +     
Sbjct: 488 KHGLSEICFREFGFKPPSFKETVGKN------KDFSFVDINHASIYCGYDVFLTYKIAKI 541

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                 +E  +      + E  L  +   +   G  ID+  + +L   +      ++E++
Sbjct: 542 FKERFRKEKKELTKLFKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENV 601

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLIL 279
            ++      +      L   LF    +D            T   +L            ++
Sbjct: 602 FEIAKQEF-NLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPYLI 660

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                S      ++ L   ++   GR+        A+ TGR S      QN+P       
Sbjct: 661 KHRTLSKLLSTYIDALPNLINKKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP------- 712

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                 S  +R   +   G KL+ AD + IE R+LA +A E+  
Sbjct: 713 -----------------VRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEIL 755

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I AF   +DI+  T    F      ++ ++R +GK +   + Y  G    K  A   G+ 
Sbjct: 756 ITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMG---IKKFARSTGVS 810

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                         + + +        +         + + G   E              
Sbjct: 811 TT--EAKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKFDK--------- 859

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                                         L     K    I L ++R+           
Sbjct: 860 ----------------------------NGLGRLIGKEPYEIDLQTARKA---------- 881

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEI 632
                 +Q +R            +Q  S DI+   M    K          ++L VHDE+
Sbjct: 882 ---GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDEL 932

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
           + E           L    M         +PL  +      + 
Sbjct: 933 LFEVKPDFLEITKQLVKETMEDCVK--LKVPLLVDIGVGNNWM 973


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   +   M+     A  +PL  E      +
Sbjct: 886 VDQVSEQIRPHMSGAAELA--VPLLVEVGVGHNW 917


>gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 194/705 (27%), Gaps = 170/705 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S  P+          QA +   + + +           +            +
Sbjct: 287 VALDTETTSLDPM----------QARLVGLSMSVEAGVACYIPVAHRGPDHAPQLPKQEV 336

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111
              L  +L D     + HN+ ++  +     G+ +       T + A         +++ 
Sbjct: 337 LDRLRPWLEDSKAHKLLHNAKYDTHVLMN-EGVALAGVA-EDTMLQAYVLESHKRVNMQE 394

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                                Y   D + T
Sbjct: 395 LAERWLGRIGTTYEDLCGKGAKQIG---------------FDEIDVDKASHYACEDADFT 439

Query: 171 RELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L + L P              E         I   G  ID  L+      + Q+  + 
Sbjct: 440 LQLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSHELGQKLLEF 499

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKD 276
           +    +L      +      L   LF    + +       +  T + +L+          
Sbjct: 500 EAKAYELAGQPF-NLNSPKQLGEILFQRMQLPIVRKTPSGAPSTDEDVLTKLAHDYPLPA 558

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     +       + L + ++   GR+        A  TGR +      QN+P    
Sbjct: 559 LLLEYRGLAKLKSTYTDKLPKMINPRTGRVHTRYAQA-AVITGRLASSDPNLQNIP---- 613

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR+  +AS G ++V AD + IE RV+A ++ +
Sbjct: 614 --------------------VRTPEGRRVRAAFVAS-GGQIVSADYSQIELRVMAHVSDD 652

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +   +AF  G+DI+  T A+ F     +VS EQR   K +                    
Sbjct: 653 ENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINF--------------GLIY 698

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+     + N+                               +   A       + A++ 
Sbjct: 699 GMGEFGLASNL------------------------------GITRDAARAYIDRYFARYP 728

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    +        +                                  RRL   D++G
Sbjct: 729 GVAAYMEQTKRMANELGYVETVF--------------------------GRRLWLPDLRG 762

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYD--IVLTVH 629
                    ++  R            +Q  + D++   M          G    +V+ VH
Sbjct: 763 ---------AKGPRRAAAERAAINAPMQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVH 813

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           DE+V E P      +   L +LM         +PL AE      +
Sbjct: 814 DELVFEVPADEVDIIKKHLPALMCNVAQ--LSVPLVAEVGVGPNW 856


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 219/456 (48%), Gaps = 21/456 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +L IDIET S   L + G + YA+     + L  YA D  PVK+ D T+   +PS ++
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++    P+   E + + +DQ INDRG RID  LV    +   +   +  +         +
Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQ--TSQQLTGL 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G++   +++ ++  +L  +  T     ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  DG + G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S G    VAD + +EARV+AW++GE+W+  AFA  EDI
Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQ 442
           Y  + ++ F  P     ++ E R  GK+ ELALGY 
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/721 (15%), Positives = 199/721 (27%), Gaps = 176/721 (24%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
             +  D ET +            A  A +   A A +           +            
Sbjct: 411  FVAFDTETTALD----------AMSAKLCGVALALEPGRACYIPLAHRAGDGLDFTGAGE 460

Query: 51   ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   +    L   L D++V+ +  N  ++ ++ ++    DI    +  T ++A    
Sbjct: 461  IAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRHG--DIRVAPYDDTMLMAYACD 518

Query: 105  LPSS------LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                      +       L  +        GK                         A  
Sbjct: 519  QGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKG---------------KAQSTFDCIAVD 563

Query: 158  LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207
               EY   D + T  L+         E          R +  +   +   G  +D  ++ 
Sbjct: 564  KATEYAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDRTVLS 623

Query: 208  KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKS 263
            +L    AQ   +L+++I +L  G   +      +   LF   G+     +      T   
Sbjct: 624  RLSGDFAQSLARLEDEIYELA-GQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAK 682

Query: 264  ILSHS-------NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGAS 315
            +L             +     +L     +       ++L + + +D GR+        ++
Sbjct: 683  VLEDLVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSLA-ST 741

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +RS  IA+ GKK
Sbjct: 742  STGRLSSTEPNLQNIP------------------------IRTREGRMIRSAFIAAPGKK 777

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE RVLA +A       AFA G DI+  T ++ F  P+  +  E R   K +
Sbjct: 778  LISADYSQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAI 837

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +          FE +    ++   M+ +  E    
Sbjct: 838  NFGIIYG-----ISAFGLSQQLGIPRQEAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHV 892

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            + L G                +     ++ + F                           
Sbjct: 893  ETLFGRKIH---------FPEIKTPKWNMRQFFERAAINAPI------------------ 925

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                      TA   + R         E   QA  R      + 
Sbjct: 926  ------------------------QGTAADIIRRAMVRVPAALE---QAGVR---ARMLL 955

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672
                           E+V E  D+    ++  +  +M +   P+ A  +PLK +   A+ 
Sbjct: 956  QVHD-----------ELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDARAAQN 1004

Query: 673  Y 673
            +
Sbjct: 1005 W 1005


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 183/694 (26%), Gaps = 146/694 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQ 59
              D ET S              +A I   ++A + +         D+ +   +      
Sbjct: 374 FCFDTETTSLDTF----------EAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAP 423

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA-L 116
            L D ++     N  ++  +     GI +   R   T +        L  ++       L
Sbjct: 424 LLEDASIEKTGQNMKYDISVLGNY-GIGV-GGRMFDTMIAHYLLQPELRHNMDYMAEVFL 481

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +               +  K   D    +              +Y   D + T +L   
Sbjct: 482 GYRTIHFGELFDDDKTKKSGKPIEDIRKVE---------LGKLKDYACEDADITLQLKNI 532

Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                          D E  L  +   +   G  ID   +    E + +E +K++ DI+ 
Sbjct: 533 FGQKLCESSLKNLFFDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILA 592

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
             D  I +      +   LF    I +    ++     T +  L           LIL  
Sbjct: 593 YVDLPI-NISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLILEH 651

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  L + ++    ++  +      S TGR S      QN+P         
Sbjct: 652 RGLKKLLSTYVEALPKLINPKTNKIHTSFNQTVVS-TGRLSSSNPNLQNIP--------- 701

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   IA  G  L+ AD + +E R++A ++G+   + 
Sbjct: 702 ---------------VRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLS 746

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AFA+G+DI+  T A+ F  PI++V+ + R   K     + Y               LD+ 
Sbjct: 747 AFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYG-----ISAFGLSERLDIP 801

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +          FE +   + +     ++         L G    L           +   
Sbjct: 802 RKEAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYL---------PDINSQ 852

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +      +                                   ++    V     + 
Sbjct: 853 NAGVRGFAERIAINAPIQGTAADII---------------------KIAMIKVDEAIRHH 891

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
           N  +                           + M              HDE+V   P   
Sbjct: 892 NYRS---------------------------QMMLQV-----------HDELVFNVPTEE 913

Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  +   M    S    +PL  +      +
Sbjct: 914 VDEFRQSVKHAMETAAS--LRVPLIVDIGIGHNW 945


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 99/698 (14%), Positives = 194/698 (27%), Gaps = 155/698 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57
             L +D ET S   +           A +   ++A ++          E+     + +  
Sbjct: 348 KNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYVAIPAEREKALRIVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
                ++ ++ +  N  ++  +      I+I  K +  T +        L  ++      
Sbjct: 398 KPLYENKKILKIGQNIKYDYEVLLNY-DIEIKGKMF-DTMIAHYLIQPELHHNMDYLAEV 455

Query: 116 -LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            LN+     +   G K    +  +       Y               EY   D + T  L
Sbjct: 456 FLNYQTIHIEELIGPKGKNQKNMRDLNPKDVY---------------EYAAEDADITLRL 500

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L P            + E  L  +   +   G  +D + + +  ++  +  +K +E 
Sbjct: 501 KNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERMRKYEEK 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
           I +       +      +   LF    I +    ++     T + +L          + I
Sbjct: 561 IYEEAAEKF-NISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKNPIVENI 619

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           LN           ++ L   ++   G +  +      + TGR S      QN+P      
Sbjct: 620 LNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------ 672

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C I   G     AD + IE R++A ++G++ 
Sbjct: 673 ------------------VRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDEN 714

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF  G DI+  T AK ++  IDKV+  QR   K     + Y        T      +
Sbjct: 715 MIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYG-----ITTYGLAQRM 769

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++         T  F+ + + +++    ++   +    + + G    L           +
Sbjct: 770 NISNSEAKDLITDYFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLA---------DI 820

Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                 +        +      S   +  V                              
Sbjct: 821 NSHNGTVRGFAERNAINAPIQGSEADIIKV------------------------------ 850

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                       R R  G               +   M           L VHDE+    
Sbjct: 851 -----AMIKIWNRFRQEG---------------IKSKMI----------LQVHDELNFSV 880

Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                  V  +    M         +PL A+      +
Sbjct: 881 YPEEKEKVEQIVIQEMQNAFH--LDVPLTADAGWGNNW 916


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 185/648 (28%), Gaps = 152/648 (23%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L DE+V+ VA N  ++ +L K+     I ++ +  T +++           +   
Sbjct: 35  RLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPL 91

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L  +    K   G                        +        Y   D + T 
Sbjct: 92  SEKFLGHTPIPYKDVAGSG---------------KANVTFDLVDIDRATHYAAEDADVTL 136

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L+  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L+
Sbjct: 137 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLE 196

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKD 276
           ++I     G   +      L   LF   G+     ++     T  S+L            
Sbjct: 197 DEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 255

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I++    +       + L   V  + +   T     ++ TGR S      QN+P     
Sbjct: 256 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIP----- 310

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 311 -------------------VRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 351

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              KAF +G DI+  T ++ F  P++ +  E R   K +                    G
Sbjct: 352 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF--------------GIIYG 397

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           +     +  +                                  +      K +  +  G
Sbjct: 398 ISAFGLANQLSIE------------------------------RSEAGDYIKKYFERFPG 427

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +    +                                           RR+ Y +++  
Sbjct: 428 IRDYMESRKAMARDKGYVETIF--------------------------GRRINYPEIRSS 461

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--------KNGYDIVLTV 628
              +        R            +Q  + D++   M                 ++L V
Sbjct: 462 NPSVRAF---NERAAINAP------IQGSAADVIRRAMIKMEPALAQAGLAERVRMLLQV 512

Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           HDE++ E  D         + S+M     P+    +PL+ +   A  +
Sbjct: 513 HDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAATNW 560


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 216/474 (45%), Gaps = 41/474 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ YAE     I L  YA D   V++ D  +   +P ++L
Sbjct: 1   MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98
             L D+TV   A N+ FER+   + L                       +    W C+ V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQ 154
            +   GLP SL+     LN      KM+EG+ LI  FC    ++            + + 
Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALD 178

Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            W  F  Y KRDVE    + +RL   P+ +   + + LDQ INDRG  IDL+L  +   +
Sbjct: 179 KWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAM 238

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
            A+ R+ L   + + T     +      +  +L    G+    + +  +K +L  +    
Sbjct: 239 DAKSRESLMAALKEKTGLE--NPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLKTAQEP- 294

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + ++  R   + S++ K   +  AV  DGR RG  QFYGA+RTGR +G   Q QNLP+
Sbjct: 295 -LRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQ 353

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    + +      E           + S  +R+  +   G K VV+D + IEARV
Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALG 440
           ++W+AGE WK  AFA G+DIY +T ++ F  P     V+ E R  GK+ ELA  
Sbjct: 414 ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACI 467



 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +   +       A+   +       + ++WR+ +  ++  W  +       +++   +  
Sbjct: 777 YGGSVGALKAMGALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPV-- 834

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------ATSQLMRER 591
                V  +        + I LPS R+L Y   +   +             AT +  R  
Sbjct: 835 ----WVNNIRFVCQSGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLE 890

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           +YG K  ENIVQ  +RDILC  M+        IV  VHDE++ E       SV  +C  M
Sbjct: 891 SYGPKFVENIVQGTARDILCYAMQTL--RCCAIVGHVHDELIIECSKE--VSVDAICEQM 946

Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ P WA+GL L+A+GYE   Y+K
Sbjct: 947 SRTPPWAEGLVLRADGYECAFYQK 970


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 105/719 (14%), Positives = 187/719 (26%), Gaps = 184/719 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
           +  D ET +               A +   + A           +               
Sbjct: 395 VAFDTETDALSSAT----------AGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 444

Query: 50  QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
              +P     + L   L D  V+ VA N+ ++  +  +     I       T +++    
Sbjct: 445 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 501

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  +       L       K   G  K  I+                     A   
Sbjct: 502 AGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHV-----------------ALPE 544

Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L+  L P              ER +  +   + + G R+D + +  
Sbjct: 545 ATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRL 604

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSI 264
           L    +    + +    +L      +      +   LF    +  G         T   +
Sbjct: 605 LSNEFSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 663

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           L    +      ++L+    S         L  A++   GR+  +     A+ TGR S  
Sbjct: 664 LESLALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALA-ATTTGRLSSS 722

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A+ G  L+ AD + 
Sbjct: 723 DPNLQNIP------------------------VRTEEGRKIRKAFVAAPGHVLISADYSQ 758

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA I       KAF  G DI+  T ++ F+TPI+ +    R   K +        
Sbjct: 759 IELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN------- 811

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   A +  +     
Sbjct: 812 -------FGIVYGIS------------------------------AFGLANQLGISQGEA 834

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
               K +  +  G+                                              
Sbjct: 835 GAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIF------------------------- 869

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATK 619
             R++   D++   +          R            +Q  + D++   M         
Sbjct: 870 -GRKINIPDIEAKSAAHRQFA---ERAAINAP------IQGAAADVMRRAMIRMPVALEA 919

Query: 620 NGY--DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            G    ++L VHDE+V E P+        +   +M K   P+ A  +PL  E   A  +
Sbjct: 920 AGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 978


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/686 (14%), Positives = 203/686 (29%), Gaps = 132/686 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58
            + +D ET S              +A +   +   +           D  E+  +   L 
Sbjct: 352 HIAVDTETTSLD----------VFEAELAGISLCAEAGKAFFIATTPDALERKEVVKQLK 401

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115
             L +  +     N  ++ ++ KK  GI++    +  T + +         +L +     
Sbjct: 402 PLLENPAITKSGQNLKYDMLVLKKY-GIELAPISF-DTMLASYVLNPDEHHNLDDMALRY 459

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L  +        G     R           +    +   A+Q   E  +  ++A  +L  
Sbjct: 460 LGRTTTKYDELTGTGKQRRHIFEVEKEALTNYACQDADVAFQ-LEEVLQAQLQAEPQL-- 516

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L   +  E  L  +  T+   G  ID + + ++ E    E + L ++I     G   + 
Sbjct: 517 -LALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYAAA-GSSFNI 574

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF    +     ++    T   +L     T      +L+           +
Sbjct: 575 DSPKQLSHVLFTDLSLPTGKSTKTGFSTDVGVLEELAATYPIASDLLSYRTLQKLKGTYI 634

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
             L + ++   GR+  +   +  + TGR S      QN+P                    
Sbjct: 635 EALPKIINPRTGRIHTSFNQH-ITATGRLSSSNPNLQNIP-------------------- 673

Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   I S     L+ AD + IE R+ A ++G++  I AF NGEDI+ 
Sbjct: 674 ----VRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIHT 729

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T    F T  +++S + R   K +   + Y       +       L++ Q    V   +
Sbjct: 730 ATAQVIFGT--EEISSDMRRKAKEVNFGVLYG-----IQPFGLAKRLNIPQKEAKVIIET 782

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
               + Q  +    + ++  E      L+G    +     R            + +    
Sbjct: 783 YKAKYPQLFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNG---------TVQKAAER 833

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                             + +   +                                   
Sbjct: 834 AAMNTPIQGTAADIIKCAMNLCYQQ----------------------------------- 858

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649
                      +QA                  +++L VHDE++ ET D+   ++  L   
Sbjct: 859 -----------MQASG-------------MASEMLLQVHDELLFETTDSEKEALTKLVEN 894

Query: 650 LMTKNPSWA--KGLPLKAEGYEAKRY 673
            M +       K +P++ +    K +
Sbjct: 895 AMKEAAVLCGMKQVPVEVDCGVGKNW 920


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 196/704 (27%), Gaps = 156/704 (22%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCA--YAWDDEPVKLWDRTE--QSAMPSD-----L 57
           D ET   +P            A +      +  + +              +  D     L
Sbjct: 391 DTETSGLEP----------RDAALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTAL 440

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114
              L          N+ F+R++F    GI++         + +         +L +    
Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINLTGV-VFDPMLASYVLNPDTSHNLTDLTQR 498

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L  +         K                   +            YC   V AT +L 
Sbjct: 499 YLGLTIQNYVDLVPKG------------------KTIADINISAVANYCCLQVYATFQLV 540

Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +L               + E+ L  +  T+   G RID   + +L + +  +  KL E 
Sbjct: 541 AKLREELAKTPNLDKLLREVEQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQ 600

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL--AKD 276
             +L      +      L   LF   G+             T  + L            +
Sbjct: 601 ATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQEVDETGFVN 659

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            I      S      ++ L   V  D  R+        A+ TGR S      QN+P    
Sbjct: 660 AITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQT-ATSTGRLSSSNPNLQNIP---- 714

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                    S  +R   +  +G  +  AD + IE R+LA ++ E
Sbjct: 715 --------------------IRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQE 754

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++A+   EDI+  T    F    D ++ ++R I K +   + Y  G+  F       
Sbjct: 755 PLLVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLKF-----SR 807

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
              + +   N       E + +  ++   ++ Q       + ++G         +     
Sbjct: 808 STGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRR------YFN--- 858

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                                        +   L+  +      I L             
Sbjct: 859 ----------------------------FDSTSLLNLKGSNPEDIDL------------S 878

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDE 631
               L    + L+R            +Q  S DI+   M    +        ++L VHDE
Sbjct: 879 KLKNLGAKDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDE 932

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +V E P   +  +   + S+M         +PL  +    + + 
Sbjct: 933 LVFEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GI++   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    + E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T ++ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L     +
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 188/701 (26%), Gaps = 158/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS--AMPSDL 57
           ++ ID ET S  P            A +   + AW +             +    +P D+
Sbjct: 316 RVAIDTETSSLDP----------HAAELVGFSLAWFEGDRTRAVYVPLGHREGKQIPRDV 365

Query: 58  L-----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLK 110
                  +L D +   +A N+ F+  +F    G+         T + +          L 
Sbjct: 366 ALALLGPWLEDGSKAKLAQNAKFDWQIF-WAQGLRPRGLA-RDTLLESYVLDSTAAHDLD 423

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L           GK                   R+           Y   D E 
Sbjct: 424 SLAERYLQHRNISYAELTGKG---------------RQARSFAAVDIASATAYAAEDAEV 468

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              +  ++ P             D E  L  +   +   G RID+D++ +L E +     
Sbjct: 469 CLRVDAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELDTRMA 528

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
            ++ +      G   +      ++  LF   G+ ++  +      T + +L+        
Sbjct: 529 TVESEAFAAA-GQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNEDVLAELAKQADL 587

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LIL+    +       + L + +    GR+        A  TGR S      QN+P  
Sbjct: 588 PRLILDYRGLAKLKNTYADALPQMIQERTGRVHTHYHQAVA-ATGRLSSSDPNLQNIP-- 644

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R   +A  G  L+ AD + IE R++A ++
Sbjct: 645 ----------------------VRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLS 682

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+    +AFA G DI+  T A+ F  P+++V+ EQR   K +   L Y            
Sbjct: 683 GDAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTP-----YGL 737

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + Q          FE +     +    +    +    + L G    L        
Sbjct: 738 AQQLGVGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYL-------- 789

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +                          A++ +L M      +       R L     
Sbjct: 790 -PEIRSQNPARRNYAERAAINAPMQGTA--ADLIKLAMIAVDAWLLAQTDHGRML----- 841

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                                     ++
Sbjct: 842 -----------------------------------------LQVHDE-----------LI 849

Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P+    +    L   M      A  +PL         +
Sbjct: 850 LEVPEKAVDAACQMLREKMEGVAELA--VPLTVGLGVGANW 888


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 93/690 (13%), Positives = 192/690 (27%), Gaps = 135/690 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
             L ID ET S +P+          +A +   +++  +             E   + ++ 
Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPPEREEALKIVNEF 418

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  M V  N  ++ ++ +   G+++  +    T +        L  ++      
Sbjct: 419 RPLYENENSMKVGQNIKYDILVLQNY-GVEVKGE-LFDTMLAHYVLQPELRHNMDYLAEI 476

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +   D PP +  +     A          + E  ++ 
Sbjct: 477 YLHYQTIHIDELIGPKGKNQKNMR---DLPPEEVYKYACEDADITLKLKNVLEEELKKQG 533

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            + L    + E  L  +   +   G RID + + +  E      ++++++I +L  G   
Sbjct: 534 VEHLF--YEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKEIYELA-GETF 590

Query: 234 SSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      +   LF    I             T + +L            IL         
Sbjct: 591 NIASPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVIGKILEYRGLKKLL 650

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   ++   GR+  +      + TGR S      QN+P                
Sbjct: 651 GTYVDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP---------------- 693

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   I  +  +   AD + IE R++A ++ +   I AF +G D
Sbjct: 694 --------IRDEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 745

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T AK +   I  V+ + R   K     + Y               +++ +      
Sbjct: 746 IHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYG-----ISIFGLAERMNVDRKEAKEL 800

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               FE + Q   +         E    + +      L           +      +   
Sbjct: 801 IDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFL---------PDINSRNATVRGY 851

Query: 528 FAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                +      SA  +  V                                        
Sbjct: 852 AERNAINAPIQGSAADIIKV-----------------------------------AMARI 876

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
             R ++Y  K               + +                 +    P+     V  
Sbjct: 877 YERFQSYKLKA--------------KMILQVHDE-----------LNFSVPEAEKEFVQQ 911

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +    M +   +   +PL+A+    K + K
Sbjct: 912 IVIEEMERA--YRMHVPLRADCGWGKNWLK 939


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 194/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
              D ET S   +          QA +   +++ ++                      A+
Sbjct: 351 FAFDTETTSLNYM----------QAELVGMSFSIEEGDAAYLPLAHDYVDAPQQLDRSAV 400

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            +     L D+    V  +  +++ +      I++    +  T + +           + 
Sbjct: 401 LALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYVLNSVATRHDMD 458

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  S    +   GK                      +        +Y   D + 
Sbjct: 459 SLAQYYLGLSTVHFEDIAGKGAKQL---------------TFNQIPLDQAAQYAAEDADI 503

Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T  L   +               + E  L  +   +   G  ID   + +  + +A    
Sbjct: 504 TLRLHNHIWQKLHQTPELASVLTEIEVPLATVLAKMEQFGVLIDSQKLSQQSQDLATRIM 563

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274
           +L+ ++ +L      +   T  L+  LF    +         +  T + +L    +T   
Sbjct: 564 QLEREVHELAGEEF-NLGSTKQLQEILFNKLSLPVLKKTPKGAPSTSEEVLQELALTYPL 622

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L++     S       + L + ++   GR+  +      + TGR S      QN+P  
Sbjct: 623 PKLLMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYHQA-ITATGRLSSTEPNLQNIP-- 679

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR   IA  G K+V AD + IE R++A ++
Sbjct: 680 ----------------------IRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLS 717

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  +KAF+ G+DI+  T A+ FN  + +V+ EQR   K +   L Y            
Sbjct: 718 QDEGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMS-----AFGL 772

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L++ +          FE +     +    +    E      + G    L        
Sbjct: 773 SKQLNVSRHDAQHYMDLYFERYPGVLKYMEDSRIVAKENGYVSTVFGRRLYL-------- 824

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI-VLPSSRRLVYSD 572
              +        +G                     +     K D  I  LPS +  +   
Sbjct: 825 -PDINASNGLRRKGAERAAINAPMQGTAADI----IKKAMLKVDAWIDTLPSDQTRMIMQ 879

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           V  +  +                              + E   N   +   IV       
Sbjct: 880 VHDELIFE-----------------------------IKEQ--NVENDKNTIV------- 901

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                            LM K  S    +PL  E    + +
Sbjct: 902 ----------------DLMEKAVS--LDVPLIVEAGVGENW 924


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 351 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 410

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GI++   R+  T + +             +     L  +    
Sbjct: 411 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 469

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 470 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 514

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    + E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 515 IPTLQPVLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 574

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 575 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 633

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 634 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 677

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 678 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 728

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T ++ F   ++ V+ + R   K +                    G+         
Sbjct: 729 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 766

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 767 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 804

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L     +
Sbjct: 805 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 838

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 839 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 889

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 890 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 921


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/695 (14%), Positives = 188/695 (27%), Gaps = 152/695 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDL 57
           +L ID ET S +          A  A +   A++W+            D T    +   L
Sbjct: 354 RLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERL 403

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              LR      V  N  ++ ++  +  G+ +P   +  T V         P +L      
Sbjct: 404 APILRRAQR-KVGQNLKYDLVVLARH-GVQVPP-PYFDTMVAHYLIAPEEPHNLDVLARQ 460

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +         G     +  +                      G Y   D +   +L 
Sbjct: 461 YLRYQMVSITELIGSGRDQKSMRDVS---------------IDEVGPYACEDTDIALQLA 505

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L              + E  L  +   +   G  ID  ++ ++ + +  E  +L+  I
Sbjct: 506 DVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKI 565

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280
            ++      +      L   LF   G+            T +S+L           LIL+
Sbjct: 566 YEVAGVEF-NIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILD 624

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      ++ L   +    GR+  T      + TGR S      QN+P        
Sbjct: 625 WRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTV-TATGRLSSSNPNLQNIP-------- 675

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +   G KL+ AD   IE R+LA ++G++   
Sbjct: 676 ----------------VRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G+DI+  T A+ F  P ++V+ EQR   K++   + Y               L  
Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYG-----ISAWGLAQRLRC 774

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                          +     +   + ++  +    + L+G          R     +  
Sbjct: 775 STREAQELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGR---------RRYVPNINS 825

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +        +         +                         +L    +      
Sbjct: 826 RNRAERSMAERIAVNMPIQGTQADMI---------------------KLAMVHIYHRLKR 864

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                           + +                E+V E P  
Sbjct: 865 EGYR---------------------------AKMLLQVHD-----------ELVFEMPPE 886

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  L    M +     +G+P++ +      +
Sbjct: 887 EVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 185/652 (28%), Gaps = 149/652 (22%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLP 106
           ++  + + L  +L +   + +  +  ++R +F    GI++       T + +       P
Sbjct: 13  DRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEADKP 70

Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             L +     L  S    +   GK                    +          EY   
Sbjct: 71  HGLASLAERHLGRSGISFEDLCGKGANQ---------------ISFDQVDIAKAAEYACE 115

Query: 166 DVEATRELFKRLIPLSDGERDL----------WLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           D + T ++   L P  +    L                I   G  ID   +      + Q
Sbjct: 116 DSDQTLDVHLVLWPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQ 175

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT 271
              +L+ +  ++      +      L    F   G+ +V  +      T + +L      
Sbjct: 176 RILQLETEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAED 234

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L   + +       + L++      GR+        A  TGR S      QN+
Sbjct: 235 YPLPAKLLEHRSLAKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNI 293

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                VR   +A+ G  +  AD + IE R++A
Sbjct: 294 P------------------------IRTAEGRRVREAFVAAPGCVIASADYSQIELRIMA 329

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+ +   ++AF +G D++  T A+ F  P+D+VS EQ                      
Sbjct: 330 HISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQ---------------------- 367

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                                   + +  +  L         A    +  TA +   + +
Sbjct: 368 ----------------------RRYAKVINFGLIYGMSAFGLARNLGIDNTAAKNYIQRY 405

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
             ++ GV    +   E                                       RRL  
Sbjct: 406 FERYPGVKAYMESTRELAKRQGYVETVF--------------------------GRRLQL 439

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624
           + +K   +      + L R            +Q  + D++   M               +
Sbjct: 440 AGIK---NAKGAQLAGLERAAINAP------MQGTAADLIKLSMVKVQQVLDAQNKSTKM 490

Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ VHDE+V E P      V   + SLM         +PL AE      + K
Sbjct: 491 IMQVHDELVFEVPQDEVDWVRTEIPSLMAGVAE--LKVPLLAEVGVGPNWDK 540


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/722 (14%), Positives = 184/722 (25%), Gaps = 187/722 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
             + +D ET S                 +   + A                         
Sbjct: 356 RLVAVDTETTSLD----------CMLCDLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQ 405

Query: 52  ----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106
                  + L   L D+ V+ V  N  ++  +  +     I       T +++       
Sbjct: 406 IGKAEALAALKPLLEDDAVLKVFQNGKYDLNVLARE---GIAVAPIDDTMIISFALDAGR 462

Query: 107 --------SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                     +       L       K   G                             
Sbjct: 463 SESGIGGGHGMDELAERHLGHPCISFKELCGTG---------------RKAIPFAEVPLD 507

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207
              EY   D + T  L   L      E          R L  +   +   G ++D   + 
Sbjct: 508 KATEYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLA 567

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKS 263
           KL E  A E K+L+ +I ++             L   LF   G             T +S
Sbjct: 568 KLSEEFATETKRLEGEIHEIAGQEFT-VGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQS 626

Query: 264 ILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321
           +L   +         +L     +       + L EA++   GR+  +    GA +TGR S
Sbjct: 627 VLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSLVGA-QTGRLS 685

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   +A  G  L+ AD 
Sbjct: 686 STDPNLQNIP------------------------IRTEIGRQIRDAFVAEEGNVLLAADY 721

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+ A +A      +AFA GEDI+  T  + F     +V+++ RA  K +  A+ Y
Sbjct: 722 SQIELRLAAHMADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILY 777

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                                                +  +   
Sbjct: 778 GISRWGLAG--------------------------------------------RLGVEAD 793

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             + +   +  +  G+ +      E                                   
Sbjct: 794 EAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLF----------------------- 830

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617
               R+  +  +          +    R            +Q  S DI+   M       
Sbjct: 831 ---GRKTWFPRINSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMVRMNSAL 878

Query: 618 TKNGY---DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAK 671
            + G     ++L VHDE+V E P+    +   +   +M     P     +PL  E    K
Sbjct: 879 EEAGLGHVRMLLQVHDELVFELPEADVAAASAIIERVMAGAAQPYVELSVPLGVEIGTGK 938

Query: 672 RY 673
            +
Sbjct: 939 SW 940


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPEKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTAPRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GI++   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    + E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T ++ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L     +
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISGQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 101/691 (14%), Positives = 203/691 (29%), Gaps = 140/691 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + ID ET S  P+          +A +   ++  +                     +  +
Sbjct: 337 VSIDTETTSLNPM----------EAKLVGLSFCMELGQAAYIPLAHHYPGVPSQLNREQV 386

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
              L  +L  +  + +  N  ++R +F    G+ +       T + +      L   L +
Sbjct: 387 LQRLKPWLESDEKLKIGQNLKYDRHVFANH-GVMLNGI-VHDTLLQSYVLESHLSHDLDS 444

Query: 112 AC-LALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L           GK    I         +  Y    A+          Y     +
Sbjct: 445 LASRHLGIQTISYDEVTGKGAKRIGFEQVEIHRAGIYAAEDADIPLRLHRV-LYPVISQD 503

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           A  E           E  L  +   I   G  +D DL+      + Q+   L++    L 
Sbjct: 504 AHLE-----YIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQQAHSLA 558

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLAS 284
                +   T  ++  LF    + ++  +      T + +L           ++L+    
Sbjct: 559 GHAF-NLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEVLQRLASDYPLPKVLLDYRGL 617

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +      ++ L + V+   GR+        A  TGR +      QN+P            
Sbjct: 618 AKLKSTYIDKLPQMVNKQTGRVHTHYAQAVA-VTGRLASNDPNLQNIP------------ 664

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   IA +G  ++ AD + IE R++A I+G+   I AF+
Sbjct: 665 ------------VRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFS 712

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G+DI+  T A+ F  P+++V+ EQR   KV+   L Y               L +++ +
Sbjct: 713 EGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMS-----EFGLATQLGIERTA 767

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   F  +     +    ++   +    + ++G   +L       +++        
Sbjct: 768 ARTFIDRYFARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQ------- 820

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                   +      +A  +  +  + +              R L  + ++         
Sbjct: 821 -MGAERAAINAPMQGTAADIIKLAMISVH-------------RWLAEAQLQSKL------ 860

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                            I+Q                    +VL    E++          
Sbjct: 861 -----------------IMQ-------------VHDE---LVL----EVLV----DELPV 879

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   L  LM         +PLK +    K +
Sbjct: 880 IKENLPRLMENVLK--LDVPLKVQTGIGKNW 908


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 97/692 (14%), Positives = 189/692 (27%), Gaps = 154/692 (22%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQ 59
           D ET S  P            A +      W +  V       +         +   L  
Sbjct: 364 DTETTSLDP----------RDAQLVGIGCCWSERDVAYLPLGHRQGSNLDWDLVKQSLQP 413

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
              D        N  ++  +F+    I +   ++    + +         +L +     L
Sbjct: 414 IWEDPNRPKSLQNCKYDLSIFRAHS-IRLQGIQF-DPMLASYVLNPEASHNLADLAASYL 471

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---EL 173
           N      +   GKA      +   D P           A+  +        +  +    L
Sbjct: 472 NLPTTSYEKLLGKA------ESLADLPIAKVAEYCGTDAYCAYRLVPILTEKLQQTDPRL 525

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +   +     E  L  + + +   G RID + + +  + + +E   L++       G + 
Sbjct: 526 WNLFV---QVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQA-GEVF 581

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      L   LF    +D+    +      T  S+L          + IL     +   
Sbjct: 582 NLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVLEKLEGDHPVIETILQYRTLAKLK 641

Query: 289 ILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              ++ L   V  D GR+  +      + TGR S      QN+P                
Sbjct: 642 STYVDALPALVRRDTGRVHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 684

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                        S  +R   +   G  L  AD + IE R+LA ++ E   I+ F +GED
Sbjct: 685 --------IRSEFSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECFRSGED 736

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T    F                                              +  +
Sbjct: 737 VHTLTARLLF----------------------------------------------EKQE 750

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
            TS      +  ++ +        FA    +     +   + +  ++ GV    +     
Sbjct: 751 VTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEFLRRFNERYAGVFAYLRATEAF 810

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +                           RR  + ++    S L+    Q 
Sbjct: 811 VEKHGYVETLL--------------------------GRRRYFPNL----SQLSGHRKQA 840

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643
                         +Q  + DI+   M    +        ++L VHDE+V E   + +  
Sbjct: 841 ELRA-----AVNAPIQGSASDIIKVAMVRLQEKLQNFRSRLLLQVHDELVFEVEPSEWQD 895

Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           +   +   M +       +PL  +      ++
Sbjct: 896 LRPLIQREMEEAVP--LSIPLVVDIQIGHNWK 925


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 94/703 (13%), Positives = 184/703 (26%), Gaps = 164/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
                D ET     L           A I   ++A++              +   + +  
Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAFEKGKAYYVPTPDSREQALEIVNIF 406

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              L D  +  V  N  ++ +L  +   + +       T +            +      
Sbjct: 407 KPVLEDANIEKVGQNIKYDILLLSRY-DVKVKGT-LFDTMLAHYLIDPDTRHGMDVLAEN 464

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +         G+    +                      +L  EY   D + T +L 
Sbjct: 465 YLGYIPVSITKLIGEKGKKQG--------------NMRDVEIELIKEYASEDADITLQLK 510

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++  PL +           E  L  +   I   G +ID+D++    + I ++ + L+  I
Sbjct: 511 EKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASI 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +       +      L   LF    +             T + +L            IL
Sbjct: 571 YEKAGVKF-NIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDIL 629

Query: 280 NRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L   ++   G +  +     A  TGR S      QN+P       
Sbjct: 630 DFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVA-ATGRLSSTNPNLQNIP------- 681

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   I       ++ AD + IE R++A ++ +  
Sbjct: 682 -----------------IRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDAN 724

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++AF  G DI+  T AK +   +D+VS +QR                            
Sbjct: 725 MLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNA------------------------- 759

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              +A +  +         +    +       +   +  ++ G+
Sbjct: 760 -------------------KAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGI 800

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                                                     +     RR    D+    
Sbjct: 801 RDYMAKAIASAKENG--------------------------FVETILKRRRYLRDINSAN 834

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631
               T      R            +Q  + D++   M    +          +++ VHDE
Sbjct: 835 M---TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDE 885

Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +V + P        TL    M         +P++ E  + K +
Sbjct: 886 LVFDVPLDEVEKFKTLIQNRMKTAIP--LQVPIEVEIGQGKNW 926


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 101/706 (14%), Positives = 196/706 (27%), Gaps = 158/706 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL----- 57
            + +D ET S   +           A +   +               +     DL     
Sbjct: 346 YVAVDTETTSLNEMR----------AELVGISLCVKAGQACYIPINHKEGANDDLFGSDK 395

Query: 58  ---------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                             L+D++++ +  N  ++  +F +     +       T +++  
Sbjct: 396 LAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIFARC---GVDVAPIDDTMLMSYA 452

Query: 103 NGLP---SSLKNACLAL-NFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +      L   +    K  +  GK+ I        ++  Y    A+  ++ 
Sbjct: 453 QNAGLHNHGMDTLSDRLLGHTPIPIKSLLGTGKSAITFDRVDVAEAVKYAAEDADITLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQ            T  +++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 513 WQHLKPQLHVKGVTT--VYETL------ERPLVPVLAEMEMTGIKVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+ +I +L  G   +      L   LF   GI+     +     T   +L    I 
Sbjct: 565 KMAGLEAEIHELA-GRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLEDLAIE 623

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L   ++   GR+  +    GA+ TGR +      QN+
Sbjct: 624 HELPGRVLDWRQLSKLKSTYTDALQNHINAETGRVHTSYSIAGAN-TGRLASTDPNLQNI 682

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  GK LV  D + IE R+LA
Sbjct: 683 P------------------------IRSEEGRRIREAFIAEEGKVLVALDYSQIELRILA 718

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +A      +AFA+G DI+  T ++ F+ P+D+++ + R   K +   + Y         
Sbjct: 719 HVADIPSLKQAFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYG-----ISG 773

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L + +F         FE +    ++         E      L G          
Sbjct: 774 FGLARNLRIPRFEAQGFIDRYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRKINT----- 828

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +              +      +A  V     + M                   
Sbjct: 829 ----PEIGAKGPQAGFAKRAAINAPIQGTAADVIRRAMVRMPDAI--------------- 869

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                                D   + +                
Sbjct: 870 ------------------------------------ADQPAKMLLQVHDE---------- 883

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            ++ E  +     +  T   +M     P+    + L A+  E + +
Sbjct: 884 -LLFEVENGAQEKLIETARDVMENAAMPAVKLDVTLTADAGEGQNW 928


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 97/718 (13%), Positives = 190/718 (26%), Gaps = 175/718 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
           L  D E  S   +             +   ++A                           
Sbjct: 382 LAFDTEASSLSAMKC----------DLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKA 431

Query: 50  -----QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                   +P D     L   L D+ V+ +  N  ++ ++ ++  GI +    +  T ++
Sbjct: 432 VEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAP--FDDTMLI 488

Query: 100 ARTNGLP-----SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           +             +       L       K   G                    R    
Sbjct: 489 SYALDASASLAGHGMDELSERFLGHKPMSYKELCGSG---------------KGARPIAA 533

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDL 203
            A      Y   D + T  L++ L P              ER L  +   + +RG ++D 
Sbjct: 534 CAIDKVTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDR 593

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---- 259
            ++ +L    AQ++  L+ +I ++  G   +      L   LF   G+     ++     
Sbjct: 594 QILSRLSGRFAQKQAGLEAEIAEIA-GETFNPGSPKQLGEVLFGKLGLPGGKKTKSGQWS 652

Query: 260 TLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L             I++    +       +TL   + + GR+  +     ++ TG
Sbjct: 653 TDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSMA-STTTG 711

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R+  +A  G  LV 
Sbjct: 712 RLSSSEPNLQNIP------------------------VRTEEGRAIRTAFVAPAGHSLVS 747

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA IA      +AF  G DI+  T ++ F  P++ +  E R   K +   
Sbjct: 748 ADYSQIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFG 807

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +          FE +     +    +    E    + L
Sbjct: 808 IIYG-----ISAFGLANQLSIPRDEAGTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETL 862

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G             +  +      +                                  
Sbjct: 863 FGRRVH---------YPDIRSPNASVRAFNERAAINAPIQGTAADI-------------- 899

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                +  A  ++       G          +R      +    
Sbjct: 900 ---------------------IRRAMIRMEPALADAGL--------SAR-----MLLQVH 925

Query: 619 KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                        ++ E  D     ++  +  +M +   P     +P++ +   A  +
Sbjct: 926 DE-----------LIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDAKAAANW 972


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 102/721 (14%), Positives = 181/721 (25%), Gaps = 177/721 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
            + +D ET +            A +A +   + A                           
Sbjct: 449  IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGDG 498

Query: 50   ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                                  L   L D   + V  N  ++  +  +  GID+    + 
Sbjct: 499  GAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAP--FD 555

Query: 95   CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T +++           +       L           G                      
Sbjct: 556  DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200
                A      Y   D + T  L++ + P    E            L  +   +   G  
Sbjct: 601  FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
            ID +++ +L    +Q   +L+E+I +      +       +   LF   G+     +   
Sbjct: 661  IDRNMLSRLSGDFSQILARLEEEIQEDAGEKFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG 719

Query: 260  ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  ++L             ILN    S       ++L E          T     A+
Sbjct: 720  QWATPATLLEELAQAGHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAAT 779

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P                                +R   +A  GKK
Sbjct: 780  TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD + IE R+LA IA      +AF  G DI+  T +  F  P+D+++ + R   K +
Sbjct: 816  LISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTI 875

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y               L + +   +      FE +     +    +    E    
Sbjct: 876  NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L G  C          +  +                                      
Sbjct: 931  TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTAADII---------- 971

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                       R   + ++                              ++       + 
Sbjct: 972  -----------RRAMTRMEDALGAEK-----------------------LAA----RMLL 993

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672
                          DE+V E PD     ++  +  +M + P+ A  L  PL  E   A  
Sbjct: 994  QVH-----------DELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLVVEARAAGN 1042

Query: 673  Y 673
            +
Sbjct: 1043 W 1043


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 105/719 (14%), Positives = 187/719 (26%), Gaps = 184/719 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49
           +  D ET +               A +   + A           +               
Sbjct: 380 VAFDTETDALSSAT----------AGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 429

Query: 50  QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
              +P     + L   L D  V+ VA N+ ++  +  +     I       T +++    
Sbjct: 430 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 486

Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  +       L       K   G  K  I+                     A   
Sbjct: 487 AGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHV-----------------ALPE 529

Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L+  L P              ER +  +   + + G R+D + +  
Sbjct: 530 ATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRL 589

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSI 264
           L    +    + +    +L      +      +   LF    +  G         T   +
Sbjct: 590 LSNEFSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 648

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           L    +      ++L+    S         L  A++   GR+  +     A+ TGR S  
Sbjct: 649 LESLALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALA-ATTTGRLSSS 707

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A+ G  L+ AD + 
Sbjct: 708 DPNLQNIP------------------------VRTEEGRKIRKAFVAAPGHVLISADYSQ 743

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA I       KAF  G DI+  T ++ F+TPI+ +    R   K +        
Sbjct: 744 IELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN------- 796

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   A +  +     
Sbjct: 797 -------FGIVYGIS------------------------------AFGLANQLGISQGEA 819

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
               K +  +  G+                                              
Sbjct: 820 GAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIF------------------------- 854

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATK 619
             R++   D++   +          R            +Q  + D++   M         
Sbjct: 855 -GRKINIPDIEAKSAAHRQFA---ERAAINAP------IQGAAADVMRRAMIRMPVALEA 904

Query: 620 NGY--DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            G    ++L VHDE+V E P+        +   +M K   P+ A  +PL  E   A  +
Sbjct: 905 AGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 963


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 258 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 317

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 318 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 376

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 377 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 421

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 422 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 481

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 482 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 540

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 541 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 584

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 585 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 635

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 636 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 673

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 674 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 711

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 712 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 742

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 743 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 796

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V   +   M+     A  +PL  E      +
Sbjct: 797 VDQVSEQIRPHMSGAAELA--VPLLVEVGVGNNW 828


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 195/694 (28%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           + ++   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDSVLKTLKPLLEDPGKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+++ R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELEGVTQDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGIGNNW 917


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 99/716 (13%), Positives = 188/716 (26%), Gaps = 180/716 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------QS- 51
            +D ET S            A QA +   + +                            
Sbjct: 358 AVDTETDSLN----------ARQANMVGLSLSVAPGKACYVPFLHETIRDLLEEDSTGEA 407

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                        L   L+D +V+ V  N+ ++  +F +  GI         T +++   
Sbjct: 408 FVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVF-RGAGIP-EITPIDDTMLISYAQ 465

Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   +       L  +        G                          A +  
Sbjct: 466 SAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKR---------------IPFAQVAIEAA 510

Query: 160 GEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209
             Y   D + T  L++ L P            + ER L  +   + D G ++D   + ++
Sbjct: 511 TAYAAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRM 570

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
               A+    ++++I +   G   +      L   LF   G+     ++     T   +L
Sbjct: 571 SADFAERMGTIEQEIHEQV-GRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVL 629

Query: 266 SHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                        IL     +       + L + +  D +   T      + TGR S   
Sbjct: 630 ESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSNE 689

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +A+ G  L+ AD + I
Sbjct: 690 PNLQNIP------------------------IRTEEGARIRKAFVATPGCVLLSADYSQI 725

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA +A  +  ++AF  G+DI+  T ++ F  P++ +    R   K +         
Sbjct: 726 ELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINF------- 778

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+                                   A + ++      
Sbjct: 779 -------GIIYGIS------------------------------AFGLAQQLQISPGEAR 801

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
               A+ A++ G+    +   E                                    P 
Sbjct: 802 SYIDAYFARYPGIRAYMERTKEEAKKHGYVTT--------------------------PF 835

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RR     +               R+            Q  + DI+   M +  +     
Sbjct: 836 GRRCYVPGITEKNGARRAYA---ERQAINAPL------QGGAADIIKRAMVHLARRLPAT 886

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                +VL VHDE++ E  +    ++       M         + L+ E      +
Sbjct: 887 GLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAAK--LDVALEVETGIGPSW 940


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKK-------TLGIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIGGDQAHGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPVNF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLSDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++LS           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRVHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELEGVTNDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VEQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GI++   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPSLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T ++ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L     +
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GI++   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPSLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T ++ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L     +
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 104/702 (14%), Positives = 195/702 (27%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLL 58
            ++ +D ET   +PL          +A +       + +               + S L 
Sbjct: 322 KEICLDTETTDLRPL----------EAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQLK 371

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-L 114
             L + ++    HN  ++  + +    I + +  +  T + +          SL +    
Sbjct: 372 PLLENPSIGFYGHNFKYDYHVLRNH-NISVANISF-DTILASYLLNSHKRQHSLDHLALE 429

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  +   +   GK       K                        YC  DV+ T  L 
Sbjct: 430 LFDKVKIAIQELIGKGKNQLNMKNVALDKIC---------------HYCCEDVDYTIRLK 474

Query: 175 KRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             L+   +  +           L  +   +   G  ID   +  L + I QE   L+++I
Sbjct: 475 NILLSQLEERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNI 534

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNR 281
             L  G I +      L   LF   GI           T   +L          + +L  
Sbjct: 535 YALA-GEIFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEY 593

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +N+L   V+   GR+        A  TGR S      QN+P         
Sbjct: 594 RTLEKLRSTYVNSLPLQVNAKTGRIHCNFNQSMA-ATGRLSCQDPNLQNIP--------- 643

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R            + AD + IE R+LA ++ +   I
Sbjct: 644 ---------------VRTEVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVLI 688

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           KAF + EDI+  T +  F+ P+ +VS EQR   K +   L                    
Sbjct: 689 KAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLI------------------- 729

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                       Q    A +  +         + +  ++  V +
Sbjct: 730 -------------------------YGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKE 764

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   +      +                                R  +  +++   + 
Sbjct: 765 FLEACKQSARETGKAVTMY--------------------------GRERLLPEIRSQNAM 798

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633
           +     +               +Q    D++   M          K    ++L +HDE++
Sbjct: 799 IRATADRF---------AVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMILQIHDELI 849

Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
            E P+    S+  L    M    +    +PL    +  K ++
Sbjct: 850 FEVPNQELESISHLVKNTMENIIN--LKVPLIVNIHIGKNWK 889


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 93/703 (13%), Positives = 184/703 (26%), Gaps = 164/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
                D ET     L           A I   ++A +              +   + +  
Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAIEKGKAYYVPTPDSREQALEIINIF 406

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
              L D  +  +  N  ++ +L  +   + +       T +            +      
Sbjct: 407 KPILEDPAIQKIGQNIKYDILLLSRY-DVKVKG-ALFDTMLAHYLIDPDTRHGMDVLAEN 464

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +         G+    +                      +L  EY   D + T +L 
Sbjct: 465 YLGYIPVSITKLIGEKGKKQG--------------NMRDVEIELIKEYASEDADITLQLK 510

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           ++  PL +           E  L  +   I   G +ID+D++    + I ++ + L+  I
Sbjct: 511 EKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASI 570

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +       +      L   LF    +             T + +L            IL
Sbjct: 571 YEKAGVKF-NIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDIL 629

Query: 280 NRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L   ++ + G +  +     A  TGR S      QN+P       
Sbjct: 630 DFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVA-ATGRLSSTNPNLQNIP------- 681

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    VR   I       ++ AD + IE R++A ++ +  
Sbjct: 682 -----------------IRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDAN 724

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            ++AF  G DI+  T AK +   +D+VS +QR                            
Sbjct: 725 MLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNA------------------------- 759

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              +A +  +         +    +       +   +  ++ G+
Sbjct: 760 -------------------KAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGI 800

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                                                     +     RR    D+    
Sbjct: 801 RDYMSKAIASAKENG--------------------------FVETILKRRRYLRDINSAN 834

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631
               T      R            +Q  + D++   M    +          +++ VHDE
Sbjct: 835 M---TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDE 885

Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +V + P        TL    M         +P++ E  + K +
Sbjct: 886 LVFDVPLDEVEKFKTLIQNRMKTAIP--MQVPIEVEIGQGKNW 926


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPGKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   +D V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELDNVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 99/703 (14%), Positives = 199/703 (28%), Gaps = 164/703 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             +  D ET     L           A +   ++++ +          D+ E  A+  + 
Sbjct: 378 KSVCFDTETTDINAL----------HADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEF 427

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115
             +   +++  +AHN  ++  +  +  G+         T +            +      
Sbjct: 428 KPFFEHKSIEKIAHNMKYDIQVLHRY-GVQFAG-PLFDTMIAHYLIQPESKQGMDFLAEY 485

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN++    +   GK    +                      +   +Y   D + T +L 
Sbjct: 486 YLNYTPVSIETLIGKKGKGQG--------------NMGDLQPEAISDYACEDADITFQLK 531

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   P  +           E  L  +   + + G  ID+  +    + +A+E + L++ I
Sbjct: 532 QLFAPQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLAEETEGLEKRI 591

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +      L   LF    I             T + IL            IL
Sbjct: 592 KELAGMDF-NVDSPKQLGDVLFEHMKISSKAKKTKTGQYATSEDILQQHKNDHEIIPCIL 650

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++ L       DGR+  +      + TGR S      QN+P       
Sbjct: 651 DYRQMKKLKSTYVDPLPTMKDPVDGRVHTSYMQTV-TATGRLSSNNPNLQNIP------- 702

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   IA     +L+ AD + IE R++A +A +  
Sbjct: 703 -----------------IRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALADDTN 745

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +  DI+  T AK F+  +D V+K+QR+  K +   +                  
Sbjct: 746 MIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGII----------------- 788

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              +    +  T  + +  ++ A++  +
Sbjct: 789 ---------------------------YGQSAFGLSQNLGISRTEAKQIIDSYFAQYSTI 821

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                +  +           +                           RR    D+    
Sbjct: 822 KTYMDNAVKDARENGYVETIMQ--------------------------RRRYLPDINSAN 855

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631
           + +     +               +Q  + DI+   M    K          ++L VHDE
Sbjct: 856 AVVRGFAERN---------AVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDE 906

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V +  +     +  L    M         +P++ E   A  +
Sbjct: 907 LVFDVHNDEQEVMKKLVKEAMENAIQLV--VPMEVEMELANNW 947


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 107/720 (14%), Positives = 203/720 (28%), Gaps = 165/720 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPS 55
           + +D ET + +P+           A +   ++A +                      +  
Sbjct: 379 IAVDTETTAIRPMR----------ADLVGLSFAVEPGSGWYVPVRSPEPETHLDEATVLG 428

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-------KRW--ICTSVLARTNG-- 104
            L   L D T   + HN  ++ ++ ++  G+++           W    + + +      
Sbjct: 429 ALRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDAS 487

Query: 105 -LPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               S+    +AL            G                    +            Y
Sbjct: 488 RSSHSMDALAMALLERRNIPISELIGTGKKQ---------------KTFDTVPLDRATPY 532

Query: 163 CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T +L +RL+P              E  L  +   +   G R+D D + + +  
Sbjct: 533 AAEDADVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGR 592

Query: 213 IAQERKKLDEDIVKLTDGII---RSSRQTYALRMYLFLI--------------TGIDLVD 255
           I    K L   I     G +     +     L   LF                 G     
Sbjct: 593 IEGRVKDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGKTGPS 652

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314
                L+ +   +++     DLIL     +      L  L E +     R+  +     A
Sbjct: 653 TDAEVLEKLSQDASVKTPIPDLILEYRQLTKLVNTYLVNLVEEIDPRTKRIHASFNQTVA 712

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                                +R   +A  G 
Sbjct: 713 -ATGRLSSSDPNLQNIP------------------------IRTELGREIRKAFVAEPGH 747

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE R+LA ++ +   I+AF  G+DI+    A+  + P+ +VS+EQR   K+
Sbjct: 748 LLVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKM 807

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y               L +               +    +       Q      
Sbjct: 808 VNFGIVYG-----VTAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGY 862

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            + ++     +     R ++                 + E  +I++    +   L+    
Sbjct: 863 VETMMKRRRPIPDIDSRDQN--------------RRALAERMAINSVVQGSAADLI---- 904

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                       ++   D+               R   +       I             
Sbjct: 905 ------------KIAMVDLH---------RRLSPRAAAWREGAGPEI------------- 930

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 G  ++L +HDE+V E P     +V   + + M      A  +PL A+   +  +
Sbjct: 931 -----EGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAM--ALDVPLVADASVSGDW 983


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G+Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G+Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 195/703 (27%), Gaps = 170/703 (24%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDET 65
           +   G    A++A +   ++A           T           +  +   L   L D  
Sbjct: 340 IQSNGTD--AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPD 397

Query: 66  VMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CL 114
              V  ++ F   L            GID+   R+  T + +             +    
Sbjct: 398 KTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAK 456

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L  +    +   GK                         A +  G+Y   + + T  L 
Sbjct: 457 YLTHTPINFQEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLH 501

Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +                 D E  L  +   I  +G  +D +L+      +  +   L+ +
Sbjct: 502 EVFEARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALERE 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLI 278
              +      +      L + L+   G+ ++  +      T +++L+           ++
Sbjct: 562 AFAIAGEEF-NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL 620

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +   + S       + L E ++   GR+  +     A  TGR S      QN+P      
Sbjct: 621 MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP------ 673

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   +A  G KL+ AD + IE R++A +A ++ 
Sbjct: 674 ------------------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEG 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AF N  D++  T A+ F   ++ V+ + R   K +                    G+
Sbjct: 716 LLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGM 761

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A +  +     +     + A++ GV
Sbjct: 762 S------------------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGV 791

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           L   +      A                              +     RRL   D+    
Sbjct: 792 LDYMERTRAQAAEQG--------------------------FVETIFGRRLYLPDINAKN 825

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631
             L        R            +Q  + DI+ + M               ++L VHDE
Sbjct: 826 QSLR---KGAERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDE 876

Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E  +     +   +   M+     A  +PL  E      +
Sbjct: 877 LVLEVREDLVDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 194/696 (27%), Gaps = 153/696 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET     L           A +   +++++          E       +      
Sbjct: 376 VCFDTETTGIDAL----------NAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKP 425

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +   E++  +  N  ++  +     G+ I  K    T +           ++       L
Sbjct: 426 FFESESIEKIGQNIKYDLKILS-HYGVQIKGK-LFDTMIAHYLINPDMRHNMDVLSETYL 483

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +S    +   GK    +              ++    + +   EY   D + T +L + 
Sbjct: 484 KYSPKSIEDLIGKKGKNQ--------------KSMRDVSLEEIKEYAAEDADITYQLKQN 529

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             P+ D           E  L  +   +   G  +D+  +  +   +A E   L++ I +
Sbjct: 530 FSPILDKAETKKLFEEIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYE 589

Query: 227 LTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILN 280
                  +      L   LF    I              T + ILS+          IL 
Sbjct: 590 TAGEKF-NLASPKQLGDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDILE 648

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L   V    GR+        A  TGR S      QN+P        
Sbjct: 649 WRQMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------- 699

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   I       L+ AD + IE R++A ++GE+  
Sbjct: 700 ----------------VRTERGRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEENM 743

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I AF N +DI+ +T AK FN  ++ V+KEQR+  K +   + Y                 
Sbjct: 744 IAAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVS-----AFGLSNQTS 798

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           L +        + +  + + +S+     D   E      ++G          R   + + 
Sbjct: 799 LSRKESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGR---------RRYLKDIN 849

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +  G            +                          ++   ++    +
Sbjct: 850 SANMMVKSGAERNAVNAPIQGSAADII---------------------KIAMINIHKKLT 888

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N  +                                       ++L VHDE+V +  +
Sbjct: 889 QENWQSK--------------------------------------MLLQVHDELVFDVHN 910

Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +    +  +    M         +PL  E    K +
Sbjct: 911 SELEKIQPMIKYEMENAFK--IDVPLDVEIGIGKNW 944


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 109/723 (15%), Positives = 190/723 (26%), Gaps = 190/723 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
             + ID ET +   +           A +   + A                         
Sbjct: 358 RVVAIDTETSALDAMR----------ADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQ 407

Query: 52  ----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106
                  + L   L  + V+ V  N  ++  +  +     I       T V++       
Sbjct: 408 VDRAEALAALKPLLESDAVLKVGQNIKYDLNILARQ---GIMVSPIDDTMVMSFCLDAGR 464

Query: 107 -------SSLKNACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                    +       L  +    K     GK  I+       D+              
Sbjct: 465 SETGLAGHGMDELSERHLLHTTMKFKELCGTGKKAISFAEVPLADAT------------- 511

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLV 206
                Y   D + T  L +   P   GE          R L  +   +   G ++D + +
Sbjct: 512 ----RYAAEDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERL 567

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLK 262
             L    A +  +L+  I +   G+  +      L   LF   G             T +
Sbjct: 568 SGLSTEFAAQIARLEGVIHEKC-GMSFTIGSPKQLGEVLFDKLGYKGGKKGKTGQYSTDQ 626

Query: 263 SILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
           S+L   +        L+L     S       + L  A++   GR+  +    GA +TGR 
Sbjct: 627 SVLEGLAAQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYSLVGA-QTGRL 685

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +A  G  L+ AD
Sbjct: 686 SSNEPNLQNIP------------------------IRTEIGRQIRDAFVAEPGNVLLAAD 721

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+ A +A      +AFA GEDI+  T  + F T    V ++ R   K +  A+ 
Sbjct: 722 YSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAIL 777

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+                                     +  +  
Sbjct: 778 --------------YGISRW------------------------------GLGGRLGVSA 793

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              + +   +  +  G+ +   +  E                                  
Sbjct: 794 DEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLF---------------------- 831

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616
                R+  +  +          +    R            +Q  S DI+   M      
Sbjct: 832 ----GRKTWFPRISSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMMPA 878

Query: 617 ATKNGY---DIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWA--KGLPLKAEGYEA 670
            T+ G     ++L VHDE+V E P     +    +  +M      A    +PL  E    
Sbjct: 879 LTEAGLGHVRMLLQVHDELVFELPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVEIGTG 938

Query: 671 KRY 673
             +
Sbjct: 939 LSW 941


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 97/699 (13%), Positives = 183/699 (26%), Gaps = 156/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 321 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIV 370

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D     VAHN  F+  +  K  G+ I   +   T ++A          + +
Sbjct: 371 LDILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDS 428

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L           G                            +   +Y   D + T
Sbjct: 429 LSKEHLGIEPIAYTTLAGTGRNQL---------------TLDQIDIEKVAKYAAEDADIT 473

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L+   + +              E  L ++   +   G +ID   +++    +    K+
Sbjct: 474 FRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKE 533

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L+     L      +      LR  LF   G+  V  +      T + +L          
Sbjct: 534 LEIKCYDLAGQEF-NLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIA 592

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            LI+     S       + L + +  +GR+  +    G + TGR S      QN+P    
Sbjct: 593 ALIMKYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP---- 647

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A     +V AD + IE R++A ++ +
Sbjct: 648 --------------------IKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKD 687

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +KAF  G DI+  T A+     +D V+ EQR   K +   L Y              
Sbjct: 688 KNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMS-----AFGLAK 742

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L++ +          F  +   + +    ++   +    + ++G    L          
Sbjct: 743 QLEIPRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------P 793

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +                                                       +K 
Sbjct: 794 DISSKNVIQRNAAERAAINAPMQGTAADI----------------------------IKK 825

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +NT   +                     D +   M             VHDE+V E
Sbjct: 826 AMIDVNTMILREYN------------------DDIKMVM------------QVHDELVFE 855

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +   + S+M  +      +PL+      + +
Sbjct: 856 VRKAKLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 189/691 (27%), Gaps = 168/691 (24%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSLFER 77
           A +   ++A           T           +  +   L   L D     V  ++ F  
Sbjct: 350 AQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAI 409

Query: 78  ILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLTKME 126
            L            GID+   R+  T + +             +     L  +    +  
Sbjct: 410 NLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEI 468

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----- 181
            GK                         A +  G Y   + + T  L +           
Sbjct: 469 AGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPT 513

Query: 182 ------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 D E  L  +   I  +G  +D +L+      +  +   L+ +   +      + 
Sbjct: 514 LQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NL 572

Query: 236 RQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290
                L + L+   G+ ++  +      T +++L+           +++   + S     
Sbjct: 573 GSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKST 632

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             + L E ++   GR+  +     A  TGR S      QN+P                  
Sbjct: 633 YTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP------------------ 673

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A  G KL+ AD + IE R++A +A ++  + AF N  D++
Sbjct: 674 ------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVH 727

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T A+ F   ++ V+ + R   K +                    G+            
Sbjct: 728 RATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS----------- 762

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A +  +     +     + A++ GVL   +      A
Sbjct: 763 -------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                         +     RRL   D+      L        R
Sbjct: 804 EQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KGAER 834

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+ + M               ++L VHDE+V E  +     
Sbjct: 835 MAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQ 888

Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +   M+     A  +PL  E      +
Sbjct: 889 ISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 220/456 (48%), Gaps = 21/456 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  YA D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174
                    GK L+  F   CK +  +         +    WQ F +Y +RDVE   E+ 
Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +LT   +
Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--L 236

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    GI    +S+ ++  +L  +  T     ++  R   S S++ K 
Sbjct: 237 ANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +        
Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353

Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     + S  +R+  I S      VAD + +EARV+AW++ E W+ ++FA  EDI
Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413

Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQ 442
           Y  + ++ F  P     ++ E R  GK+ ELALGY 
Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 195/706 (27%), Gaps = 164/706 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--- 57
                D+ET S   +           A I    +  D +              P  L   
Sbjct: 339 RSFVFDLETTSLDYM----------NAAIVGWVFLVDKDS-FYVPVGHDYLDAPKQLDFD 387

Query: 58  ------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
                    L+DE++  V  N  ++  +      ID+       T V +          +
Sbjct: 388 DALLTLKPILQDESINKVGQNLKYDAHVLANYQ-IDLNGIS-DDTMVKSYVLNSVATRHN 445

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN          GK                      +    +    Y   DV
Sbjct: 446 MDDLSMHYLNHQTIHFSDVAGKGKKQ---------------ITFNQVGLEAAFPYACEDV 490

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
             T EL K L                 E  L  +   +   G  ID  L+   Q  + ++
Sbjct: 491 IVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQ 550

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNI 270
             ++     +L  G   +      ++  LF   G+           +  T +  L   + 
Sbjct: 551 MNEIQSQAFELA-GDAFNLESPKQIQQILFSEEGLGLEAKKKTPKGAPSTNEEALKLLDH 609

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                DLIL+    +      L  L + +  + +   T      + TGR S      QN+
Sbjct: 610 P--LVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLSSSNPNLQNI 667

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   IA  G  ++ AD + IE R++A
Sbjct: 668 P------------------------IRTELGARIRGAFIAGKGNVIIAADYSQIELRIMA 703

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+ +   I+AF N  D++  T +  FN PI++V+K+ R   K +   L Y         
Sbjct: 704 HISQDKSLIEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMS-----A 758

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 +++ +        + FE++    ++   +++        + ++G    L     
Sbjct: 759 FGLAKQINVSRTEAKQYIDAYFENYPGVLNYMDNIREAAKVQGYVETIMGRRLYL----- 813

Query: 511 RAKHQGVLQLWKDLTEGF-ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                 +    K L +      +      S+  +     L +     D +          
Sbjct: 814 ----PQINAKNKMLQQHALRTAINAPMQGSSADIIKKAMLDVHEWIGDGN---------- 859

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                                 D +   M             VH
Sbjct: 860 --------------------------------------DEIKMIM------------QVH 869

Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           DE+V E   +        +  LM     +   +PL  +      ++
Sbjct: 870 DELVFEVNASKADEFANKIQELMANA--YQLDIPLVVDVGIGDSWQ 913


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 193/689 (28%), Gaps = 133/689 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55
              +D+ET S  P+           A I   + +   +         +        +  +
Sbjct: 318 YFVLDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALN 367

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
           +L   L +++   +  N  ++  + K   GI+ P +    T + A          +L   
Sbjct: 368 NLKSILENQSAKIIGQNLKYDYSVLKMH-GIE-PVRPSFDTMIAAYLLNPDEKRFNLDEL 425

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN+     +                D    D T+ +   A      Y   +++   
Sbjct: 426 AMKFLNYKMISFEELFKDTSPLFGAVTFADVSVEDATKYSAEDADITRRLYEILNIKLHE 485

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L  L   E  L  +   +   G  +++D +  L    A    +L + I     G 
Sbjct: 486 A--DLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQIYNHA-GE 542

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGS 287
             +      +   LF    I     +      T   +L   +       LIL        
Sbjct: 543 AFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRADVLEELSEEHPIVRLILEYRKYQKI 602

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               L+ L + V    GR+  +    G + TGR S      QNLP               
Sbjct: 603 KSTYLDVLPKLVHPETGRIHSSFHQTG-TATGRLSSSDPNLQNLPS-------------- 647

Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                         S  +R  ++   +  K++ AD + IE RVLA ++ +   I+AF   
Sbjct: 648 ----------KQEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFKKD 697

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T ++ F  P ++V+ + R+IGK++  ++ Y                 L      
Sbjct: 698 EDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSP-----YGLSQRTGLSYDQAQ 752

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                 F  +   + +   +            + G          R +   +      + 
Sbjct: 753 KFIGEYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGR---------RREVPQLRSKNASVR 803

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +    +                                   +L   ++      +     
Sbjct: 804 QEGERIAINTPIQGTAADI---------------------MKLAMINLYDKIKQMR---- 838

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                                                 ++L VHDE+V E PD     V 
Sbjct: 839 ----------------------------------LQSKMILQVHDELVFEVPDEEVEIVK 864

Query: 646 TLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            L    M         +PLK +   +  +
Sbjct: 865 NLVRDSMENVVR--LSVPLKVDLKISDSW 891


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 194/702 (27%), Gaps = 155/702 (22%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TE 49
           M    +++ID+ET S            A +A I   A A                    +
Sbjct: 353 MKDCEEIYIDLETTSVT----------AMEADIVGWAVAAKPGEAFYIPVRGPAGQQTMD 402

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
              +       L +  +     N  ++ +++K+  GI++         V           
Sbjct: 403 NQEVLDIFRPLLENPRIAISNQNIKYDLLVWKRH-GIELQKIGM-DPMVGHYLLDAGARS 460

Query: 107 SSLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             L +     L             GK               Y    A+            
Sbjct: 461 HGLSSLADEFLKHRMIPISELIGTGKNQKRMDEIDIDQVAEYASEDADAALQIADI---- 516

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            RD    +EL+       D ER L  +   +   G R+D + + +  EL+ +  ++L E+
Sbjct: 517 IRDKLHEQELWNL---YQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVEELLEE 573

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILN 280
           +  + D    +      LR  LF   G+           T +S+L            I+ 
Sbjct: 574 LEGMADRPF-NPDSPKQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLPAKIIE 632

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      L++L + ++   GR+  +     A  TGR S      QN+P        
Sbjct: 633 YRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVA-ATGRLSSSDPNLQNIP-------- 683

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   VR   I    G +L+  D + IE RVLA  +G+   
Sbjct: 684 ----------------IRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAAL 727

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            +AF +G+DI+    A+ F      V  + R + K +                    G  
Sbjct: 728 QEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVN--------------FGVIYGQS 773

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               +                                  +           +  ++ GV 
Sbjct: 774 PYGLAAA------------------------------LNIPQEQAAEFIDDYFMRYPGVS 803

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           Q  ++  E  A        +  RR                 I     R            
Sbjct: 804 QFIEETLEQCARSGYAYTMLGRRRPITG-------------IKNTGGRNRNMP------- 843

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632
                     R           ++Q  + D++   M N  +          ++L +HDE+
Sbjct: 844 ---------ERTAI------NTVIQGSAADLIKLAMLNVHRELATSGLSARMLLQIHDEL 888

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           V ETP      +  L    M         +PL  +    + +
Sbjct: 889 VFETPVEELEPLRELVHREMVNAHP--LSVPLVVDMKHGENW 928


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 183/699 (26%), Gaps = 156/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S              +A +   ++   +          +            +
Sbjct: 321 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIV 370

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
              L     D     VAHN  F+  +  K  G+ I   +   T ++A          + +
Sbjct: 371 LDSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDS 428

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L           G                            +   +Y   D + T
Sbjct: 429 LSKEHLGIEPIAYTTLAGTGRNQL---------------TLDQIDIEKVAKYAAEDADIT 473

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L+   + +              E  L ++   +   G +ID   +++    +    K+
Sbjct: 474 FRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKE 533

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L+     L      +      LR  LF   G+  V  +      T + +L          
Sbjct: 534 LEIKCYDLAGQEF-NLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIA 592

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            LI+     S       + L + +  +GR+  +    G + TGR S      QN+P    
Sbjct: 593 ALIMKYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP---- 647

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA     +V AD + IE R++A ++ +
Sbjct: 648 --------------------IKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKD 687

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +KAF  G DI+  T A+     +D V+ EQR   K +   L Y              
Sbjct: 688 KNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMS-----AFGLAK 742

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L++ +          F  +   + +    ++   +    + ++G    L          
Sbjct: 743 QLEIPRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------P 793

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +                                                       +K 
Sbjct: 794 DISSKNVIQRNAAERAAINAPMQGTAADI----------------------------IKK 825

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +NT   Q                     D +   M             VHDE+V E
Sbjct: 826 AMIDVNTMILQEYN------------------DDIKMVM------------QVHDELVFE 855

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +   + S+M  +      +PL+      + +
Sbjct: 856 VRKAKLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 107/688 (15%), Positives = 207/688 (30%), Gaps = 138/688 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           L +D ET S              QA +   + +   +        +           L  
Sbjct: 375 LAVDTETTSLDTF----------QAELVGISLSIKPKQAWFVYFGKGGVDRRVALDMLKP 424

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116
            L + ++     N  ++ ++ KK  GIDI    +  T + +         +L +     L
Sbjct: 425 VLENPSLRKTGQNLKYDLLVLKKY-GIDINPVAF-DTMLASYVLDPEAKHNLDDLALRHL 482

Query: 117 NFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATREL 173
           +            GK  ++       +   Y C  A+  ++  ++F E   ++ +     
Sbjct: 483 SIKTTTYDELVADGKKKMSILDVPPGELSDYACQDADLALRLQEVFKEKLLQEKDL---- 538

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              L    + E  L  +  T+   G  ID D + K +  ++++  +L E I + + G + 
Sbjct: 539 ---LWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFEAS-GRVF 594

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF I G+     ++    T   +L            +L   +       
Sbjct: 595 NLDSPKQLAHILFDILGLPSGKATKTGFSTNVQVLEDLAPIHPVAQDLLEYRSLQKLRNT 654

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L + ++   G+L  +   +  + TGR S      QN+P                  
Sbjct: 655 YIEALPKMINPLTGKLHTSFNQHV-TATGRLSSSHPNLQNIP------------------ 695

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    L    +R   I S     L+ AD + IE RV A I+G++  ++AF N EDI
Sbjct: 696 ------IRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEAFRNREDI 749

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    FNT   +++ E R   K +   + Y               L++ +       
Sbjct: 750 HSATARTIFNTT--EITPEMRRKAKEVNFGVLYG-----IMPFGLSRRLNISRNEAKNII 802

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +  E +    +    +     E      L+G          R     +    K++ +  
Sbjct: 803 DTYTEKYPGIFNALQQIISDGKERGYVSTLLGR---------RRYIPDLNSRNKNMQKAA 853

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                               + +   +  +H                             
Sbjct: 854 ERAAMNTPIQGTAADIIKCAMNLCSTQLRLHK---------------------------- 885

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                                +   M           L VHDE++ ETP+     + TL 
Sbjct: 886 ---------------------MKSVML----------LQVHDELLFETPENEKHRLKTLV 914

Query: 649 -SLMTKNPSWAK--GLPLKAEGYEAKRY 673
             +M           +P++ +    K +
Sbjct: 915 EEVMIDAAKRCGLHNVPVEVDTGIGKNW 942


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D   + V  ++ 
Sbjct: 248 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 307

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 308 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 366

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 367 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 411

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 412 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 471

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 472 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 530

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 531 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 574

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 575 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 625

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 626 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 663

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 664 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 701

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 702 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 732

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 733 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 786

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 787 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 818


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 100/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLHDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKTQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 103/685 (15%), Positives = 189/685 (27%), Gaps = 132/685 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET    PL           A +   A++W+          E       +   L  
Sbjct: 382 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRC 431

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +   E +  +  N  ++  +  K   +++       T +           ++       L
Sbjct: 432 FFEAENIQKIGQNLKYDIKVLAKY-NVEVKG-PLFDTMLAHYLINPDMRHNMDVLAETYL 489

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N++        GK    +      D P    T      A          + E      ++
Sbjct: 490 NYTPVSITELIGKKGKNQLSM--RDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQK 547

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    D E  L  +   +   G  +D D +  L   + ++ + L   I  +      +  
Sbjct: 548 LFD--DIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVAGEEF-NIA 604

Query: 237 QTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L + LF    + D    ++     T + ILS           IL     +      
Sbjct: 605 SPKQLGIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEIIRNILEYRGLAKLKSTY 664

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   V    GR+        A  TGR S      QN+P                   
Sbjct: 665 VDALPLQVEESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------- 704

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        VR   I   +   L+ AD + IE R++A ++ E+  I+AF NGEDI+
Sbjct: 705 -----IRTERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKNGEDIH 759

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            +T +K F  PI++V++ QR+  K +   + Y                DL +        
Sbjct: 760 ASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVS-----AFGLSNQTDLSRGEAKELID 814

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
           + +E + + + +         +      ++     L     R            +     
Sbjct: 815 TYYETYPKLKKYMSEQVHFARDNGYVKTILDRRRYLKDINSRNAV---------VRGAAE 865

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                     +                          ++   ++       N  T     
Sbjct: 866 RNAVNAPIQGSAADII---------------------KIAMINIYNKLEAGNYKTK---- 900

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                                             ++L VHDE+V +        + TL  
Sbjct: 901 ----------------------------------MLLQVHDELVFDVYKPELEKMTTLIK 926

Query: 650 L-MTKNPSWAKGLPLKAEGYEAKRY 673
             M         +PL  E      +
Sbjct: 927 TEMENAFK--MEVPLDVEVDTGLNW 949


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G+Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +        TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVG-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +                    G+         
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A +  +     +     + A++ GVL   +    
Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             A                              +     RRL   D+      L      
Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R            +Q  + DI+ + M               ++L VHDE+V E  +  
Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +   M+     A  +PL  E      +
Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/696 (14%), Positives = 185/696 (26%), Gaps = 173/696 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
           ++  D ET              A  A I   ++A+               E  A+  +  
Sbjct: 362 EICFDTETT----------DIDALDAQIVGLSFAYRPREAFYIPFSPKFEEAKAVLIEFK 411

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
               +E +  VA N  ++  +     G+++  +    T +            +       
Sbjct: 412 PLFENENIRKVAQNIKYDLTILATY-GVEVKGE-IYDTMLAHYILEPDQRHGMDYLAETY 469

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++         GK       +                   +   EY   D + T +L  
Sbjct: 470 LSYKPIPISDLIGKGKKQLNMRDV---------------PLEQIKEYAAEDADITLQLKH 514

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L  +   +   G +ID++ +  L   + ++  K  EDI 
Sbjct: 515 VLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIF 574

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +L      +      L   LF    I             T + IL +          IL+
Sbjct: 575 QLAGMEF-NVGSPKQLGEILFEHMKIDEKPKKTPTGQYATGEDILVNYEADHEIVRKILD 633

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S      ++ L   +S   GR+  T     A  TGR S      QN+P        
Sbjct: 634 FRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVA-ATGRLSSTNPNLQNIP-------- 684

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   I       ++ AD + IE R++A  +G++  
Sbjct: 685 ----------------IRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESM 728

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           ++AF NG DI+  T +K F   +++V+ + R                          G+ 
Sbjct: 729 LEAFDNGMDIHAATASKVFGVSLEEVNSDMRRKA--------------KMVNFGIIYGIS 774

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A +  +     + +  A+  +   V 
Sbjct: 775 ------------------------------AFGLAQRLGIPRGEAKNIIDAYFTQFPKVK 804

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                  E    +      +                           RR    D+     
Sbjct: 805 SYMDQTIEKARELEYVETIL--------------------------GRRRYLRDINSRNQ 838

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632
              T      R            +Q  + D++   M               ++L VHDE+
Sbjct: 839 ---TNRGFAERNAINAP------IQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDEL 889

Query: 633 VSETPDTPYFSVGTLCSL---MTKNPSWAKGLPLKA 665
           V +   +    +     +   M         LPLK 
Sbjct: 890 VFDAHHSEVEFLKE--KIDYYMVNA------LPLKV 917


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 186/701 (26%), Gaps = 157/701 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
            + ID ET S            A  A +   + A+                         
Sbjct: 353 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110
           +   L  +L +  +  +  N  +++ +F     I +       + + +      L   L 
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIA-GDSMLASYIIESHLGHGLD 460

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +   GK                    +    A     EY  +D + 
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505

Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              L   L    D          E  +  +   +   G +ID   + +    +  E  KL
Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274
           +++          +      L+  L    GI        ++    T +++L         
Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +IL   + +       + L E +S  DGR+  T     A  TGR +      QN+P  
Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR    A  G  +V AD + IE R++A ++
Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLS 719

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G+   I AF NGED++  T A+ F    + VS EQR   K +   L Y  G         
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +   S        F  +     +    ++Q       + L G    L        
Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     +   G                +++ +  M    R +   L S         
Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTA--SDLIKRAMIDVSRWLSYDLKS--------- 874

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                   M         +VL V     
Sbjct: 875 -------------------------------------KLIM-QVHDE---LVLEV----- 888

Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              P+     V   L  +M K       +PL AE      +
Sbjct: 889 ---PEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 183/702 (26%), Gaps = 164/702 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   ++A +           +            + 
Sbjct: 343 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 393 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P             + E  + L+ + +   G  ID   +      IA     L
Sbjct: 496 QLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +     L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G ++V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y              
Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 764

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    +    E    + + G    L          
Sbjct: 765 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWL---------P 815

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                 A++ +L M      +                 
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 857

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632
                                          RD       M          +VL      
Sbjct: 858 -------------------------------RD--KLASRMIMQVHDE---LVL------ 875

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             E PD     V   L  +M         +PL AE      +
Sbjct: 876 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 113/706 (16%), Positives = 193/706 (27%), Gaps = 170/706 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDL----- 57
             +D+E  S  PL          Q  +   A+A  +            A  P+ L     
Sbjct: 332 FALDVEASSASPL----------QCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAA 381

Query: 58  ----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
                  L +     V  N  + R +     GI +       T + +       P  L +
Sbjct: 382 FARIKPLLEERAAKIVGQNLKYARHVLANC-GIALGGAA-DDTLLQSYVLEAHQPHELAS 439

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  +        GK                         A +  GEY     + T
Sbjct: 440 LANRHLGLATLACDELTGKG---------------AARIGFDQVAVERAGEYAAEQADVT 484

Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             +  +L               + E  +  +   +   G  +D  L+      + ++  +
Sbjct: 485 LRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLE 544

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275
           L++   +       +      +   LF   G+ ++  +      T +  L    +     
Sbjct: 545 LEQRAFQEAGQPF-NLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIA 603

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             IL+    +       + L + V    GRL  +     A  TGR +      QN+P   
Sbjct: 604 RAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATA-VTGRLASVEPNLQNIP--- 659

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G  LV AD + IE R++A ++ 
Sbjct: 660 ---------------------ARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSD 698

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AFAN  DI+  T A+ F  P+D VS EQR I KV+                   
Sbjct: 699 DAGLLHAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVIN--------------FGLI 744

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A +  L  +A +     +  ++
Sbjct: 745 YGMS------------------------------AFGLASQLNLERSAAQAWIDRYFTRY 774

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GV        E                                       RRL   ++ 
Sbjct: 775 PGVANYMLRTRESARAQGYVETVF--------------------------GRRLYLPEIN 808

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTV 628
                         R            +Q  + D++   M          + G  ++L V
Sbjct: 809 ARNPQRRQGA---ERAAINAP------MQGTAADLIKLAMIAVQRWIDSERLGTRLLLQV 859

Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE++ E P+     V   L S M      A  +PL+        +
Sbjct: 860 HDELILEVPEHELERVRAELPSHMCDVA--ALKVPLRVGVGVGGNW 903


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 87/704 (12%), Positives = 181/704 (25%), Gaps = 166/704 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
                D ET              A    +   +++ +         +        +    
Sbjct: 355 KSFCFDTETTGTD----------ANCCELVGLSFSVEKGQAWYVPASADQKEAHALVQQF 404

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
                +  +  +  N  F+ ++      + +  +    T +            +      
Sbjct: 405 KPVFENPAIGKIGQNLKFDILVLSWY-DVKVAGE-LFDTMLAHYLIDPETRHGMDVLSEN 462

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L ++        G K       +                   +   +Y   D + T +L
Sbjct: 463 YLGYTPVSITTLIGPKGKGQLNMRDVDP---------------KTVSDYAAEDADITLQL 507

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            +   P+           + E  L  +   +   G RID+  +      I  E + L+  
Sbjct: 508 KEIFEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEAR 567

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLI 278
           I +       +      L   LF    +D     ++     T + +L            I
Sbjct: 568 IYEKAGVPF-NIASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLMALANKSDIVQDI 626

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L            ++ L + ++   GR+  +     A  TGR S      QN+P      
Sbjct: 627 LEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP------ 679

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396
                                     VR   IA +    ++ AD + IE R++A I+ + 
Sbjct: 680 ------------------IRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDA 721

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + AFA G DI+  T AK +   +++V+  QR                           
Sbjct: 722 NMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNA------------------------ 757

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                               +A +  +         +    +       + + +  ++ G
Sbjct: 758 --------------------KAVNFGIIYGQSAFGLSQSLGIPRREAADMIEQYFIQYPG 797

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +     +              +                           RR    D+   
Sbjct: 798 IRDYMNNTIAFAKEHGYVETLLK--------------------------RRRYLRDINSA 831

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHD 630
            +   T      R            +Q  + D++   M +             + + VHD
Sbjct: 832 NA---TVRGFAERNAINAP------IQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHD 882

Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V + P     +   +    M         +P+  E  E + +
Sbjct: 883 ELVFDVPRNEVAAFKEIIEARMKGALK--TEVPIVVEIGEGQNW 924


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 100/690 (14%), Positives = 192/690 (27%), Gaps = 141/690 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59
             ID ET S              QA +   +++   +  +     +           L  
Sbjct: 371 FAIDTETTSLDTF----------QAELAGISFSLKPKEARFIYFGKGGLDIGNTLERLKP 420

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116
            L +  +     N  ++ ++ K   GI +    +  T + +         +L +     L
Sbjct: 421 VLENPDIRKTGQNLKYDLLVLKNY-GISLTPVAF-DTMLASYVLDPEEKHNLDDLAARHL 478

Query: 117 NFSEHLTKME---EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           +            EGK         S     Y C  A+              + +   E 
Sbjct: 479 SIRTTTFDELTAGEGKKRTHILDVPSAQLSDYGCQDAD-----IALRLQEVFEAKL-LED 532

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            + L      E  L  +   +  +G  ID   + K  +L+  +   L   I         
Sbjct: 533 QRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHAAAGTPF- 591

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF   G+     ++    T   +L            +L   +       
Sbjct: 592 NLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVEVLEELAPLHPIIGDLLEYRSLQKLKTT 651

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + ++   GRL  +   +  + TGR S      QN+P                  
Sbjct: 652 YIDALPKMINPGTGRLHTSFNQHV-TATGRLSSSNPNLQNIP------------------ 692

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R   I S     ++ AD + IE R+ A I+G++  I+AF N EDI
Sbjct: 693 ------VRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIEAFRNREDI 746

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F    D+++ + R   K +   + Y       +       L++ Q       
Sbjct: 747 HRATAKVIF--STDEITSDMRRKAKEVNFGVLYG-----IQPYGLSKRLNIPQSEAKAII 799

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +       L + ++         L+G          R     +     ++ +  
Sbjct: 800 ETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGR---------RRYIPDLNSRNGNIQKAA 850

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                              +NT      
Sbjct: 851 GRA-----------------------------------------------AMNTPIQG-- 861

Query: 589 RERTYGGKLTENIV--QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                  K   N+   Q      + +           ++L VHDE++ ET       +  
Sbjct: 862 -TAADIIKCAMNLCDRQ------IKK-----NNMNSVMLLQVHDELLFETTAEEKNRLSK 909

Query: 647 LCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673
           L    M +   +   K +P++ +    K +
Sbjct: 910 LVETAMIEAAVYCGLKKVPVEVDTGTGKNW 939


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 192/707 (27%), Gaps = 174/707 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
               D ET S  PL          QA +   + A                          
Sbjct: 380 FFAFDTETTSLDPL----------QAKLVGFSLALQPGKAAYVPLEHFEGGGDLLGGGRI 429

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L D+ V+ +  N  ++ ++ K+  GI I    +  T +L+    
Sbjct: 430 VGQIETRKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIR--CFDDTMLLSYALD 486

Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
              L  ++       L       K     GK + +                       + 
Sbjct: 487 AGALTHNMDALSERWLGHKPIAYKDLTHNGKKITSF-----------------AQVDLKQ 529

Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L++ L P              +R L  +   + +RG  +D  ++L+
Sbjct: 530 ATLYAAEDADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLR 589

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSI 264
           L   +AQ    L+E+I +L      +      L   LF    +            T    
Sbjct: 590 LSGELAQAAFILEEEIYQLAGEKF-NLASPKQLGGILFGKMSLPGGTRTKSGQWSTSAQT 648

Query: 265 LSHS--NITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
           L         L + +I  R   +       + L   + S  GR+         + TGR S
Sbjct: 649 LEELAAEGHILPRKIIDWRQ-LAKLKSTYADALPSYILSKTGRIHTNYSLA-ITSTGRLS 706

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R+  IA  G  L+ AD 
Sbjct: 707 SSEPNLQNIP------------------------VRTTEGRKIRTAFIAPKGHMLLSADY 742

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA IA      +AFA G+DI+  T ++ F   I+ ++ + R   K +   + Y
Sbjct: 743 SQIELRILAHIADIIALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIY 802

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L L +   +      FE +   + +    ++        + + G 
Sbjct: 803 G-----ISAFGLANQLGLSRQEASHYIQLYFERFPGIKDYMEMTKNFACRNGYVETIFGR 857

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                       +  +      +               +                     
Sbjct: 858 RIH---------YPEIKAANLQVRSFNERAAINAPIQGSA-------------------- 888

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                             +    + L +E+                    + +       
Sbjct: 889 -----------ADIIRRAMIQMENALEKEKLSA-----------------KMLLQVHD-- 918

Query: 622 YDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKA 665
                    E++ E P+     ++  +  +M     P  +  +PL+ 
Sbjct: 919 ---------ELIFEVPEDESERTMALVKKVMENATMPVLSLSVPLEV 956


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 188/706 (26%), Gaps = 169/706 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54
              ID+ET S  P            A I   + + D+                  +  + 
Sbjct: 324 IFAIDLETSSLDP----------HCAKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVL 373

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111
            +L + L D +   +  N  F+  +     GI  P      T + A      +   +L  
Sbjct: 374 KNLKKLLEDRSTKIIGQNLKFDYSVLA-VNGIH-PVVPDFDTMLAAYLLSPDAKRFNLDE 431

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L +     +    K  +                        +    Y   D + +
Sbjct: 432 LAMKFLGYKTIKFEDLMKKNQLG---------------DDFTKVPLEEAARYSVEDADIS 476

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L   L                E  L  +   +   G   D+  +  L E   +   K+
Sbjct: 477 LRLSSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPSLKNLSEKYGKILDKI 536

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276
            E++  LT G   +      +   LF   G+     ++     T    L        A  
Sbjct: 537 LEELFDLT-GEQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQ 595

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L+           L++L E V+   GR+  +    G + TGR S      QNLP    
Sbjct: 596 KLLDYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTG-TGTGRLSSSNPNMQNLP---- 650

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R C+I    G K+V AD + IE R+LA ++ 
Sbjct: 651 --------------------IRDEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQ 690

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   + AF N +D++  T +  +     +VS+EQR I                    +  
Sbjct: 691 DKQLLDAFKNDKDVHSLTASNLYGIKESEVSEEQRRI--------------GKMINFSII 736

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+     +                                 ++     E +   +    
Sbjct: 737 YGISSYGLASR------------------------------LRIPTNVAEEMISNYFKAF 766

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             V    +D                                    +     R+      K
Sbjct: 767 PEVRAFIRDTISEAKEKC--------------------------FVRTMFGRKREIPQFK 800

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628
                      +  R            +Q  + DI+   M          +     +L V
Sbjct: 801 TKN---RNVIQEGERIAI------NTPIQGTAADIMKMAMIKIYNLLKEKEMESFAILQV 851

Query: 629 HDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E P+     +  +    M++       +PL  E      +
Sbjct: 852 HDEMVYEAPEKEIEKLKEILKEGMSEVVE--LSVPLDIEISVGDYW 895


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 143/695 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55
           +L ID ET S            A Q  +   + +             +         +  
Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGKACYIPIGHKFKGCLKKETVIK 394

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L D++V  +  N  F+ I+  K  GI++       T +++          ++   
Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKH-GINMN--SMEDTMLMSYVLDAGKNRHNMDTL 451

Query: 113 CL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L       K     GK  I         +  Y    A+       +  Y       
Sbjct: 452 SEIHLQHKTISFKEIVGTGKKEINFSDVELDKAMEYAAEDAD-----ITYRLYKIFSKNL 506

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E    +  +   E+ L  +   +   G +ID   +  L E   ++  KL++++ K++ 
Sbjct: 507 KLEKLTNIYEI--FEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISK 564

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLAS 284
               +      L   ++    I ++  +      T  S+L            LIL+    
Sbjct: 565 KKF-NIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQV 623

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           S       + L E ++ + +   T     A+ TGR +      QN+P             
Sbjct: 624 SKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIP------------- 670

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G  L+ AD   IE R+LA +A      KAF+N
Sbjct: 671 -----------IKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSN 719

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T ++ FN  I KV ++ R   K +   + Y               +++     
Sbjct: 720 NEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYG-----ISQYGLAKQINVSNHEA 774

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           +    + F  + + + +         +      + G          R+   G+     ++
Sbjct: 775 DEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR---------RSHFNGINDKNFNV 825

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                          +                                       +    
Sbjct: 826 RNFQERAAINAPIQGSASEIM-------------------------------RLAMIRLN 854

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +    +    K+                           +L +HDE++ E P     ++
Sbjct: 855 KKFESIKNNKSKI---------------------------LLQIHDELIFEVPVKEVKNI 887

Query: 645 GTLCS-LMTKNPSWAKGL-----PLKAEGYEAKRY 673
             +    MT        L     PL  +      +
Sbjct: 888 TEIIKDEMTSVTE--SDLHTFSTPLTVDVNTGDNW 920


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 102/697 (14%), Positives = 198/697 (28%), Gaps = 152/697 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--------EQSAMP 54
           +  +D+ET   +P           +A I   A +W+                  +   + 
Sbjct: 319 EFCVDLETTGLKP----------AEAEIVGWAISWEKHRGFYIPVEGPSGQLALDPQYVL 368

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             L   L D  ++    N  ++ ++  + +G+ +         V +          SL  
Sbjct: 369 EHLKPILEDPEILITNQNIKYDMVVLMR-VGVFLQGVSI-DPMVASYLISAGERGHSLDK 426

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEA 169
                LN +        G     +           +    +   AWQL      +     
Sbjct: 427 LSERYLNHTMIPISELIGSGKQQKKMFEVDVDKVAEYAVEDAEIAWQLSRILQDELKHAG 486

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             EL+  L      ER L  +   +   G ++D   + +  +L+ +    L  +I ++  
Sbjct: 487 LWELYWEL------ERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIAG 540

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      LR  LF    + +   ++    T +S+L            I      S 
Sbjct: 541 HEF-NIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEKLAPLHALPARITEHRHLSK 599

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                L+ L   V+   GR+  +     A  TGR S      QN+P              
Sbjct: 600 LKSTYLDALPGLVNPETGRIHASFNQVVA-ATGRLSSSDPNLQNIP-------------- 644

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   I      +L+ AD + IE R+LA ++ +    +AF  
Sbjct: 645 ----------VRTQEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFRE 694

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G DI+    +  F  P D+V  + R   K +                    G      S+
Sbjct: 695 GADIHTAVASDIFRVPHDQVDSDMRRTAKAVN--------------FGVIYGQSPFGLSE 740

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD- 523
            +                               +  +      + +  ++QGV +     
Sbjct: 741 AI------------------------------GIPQSEAAGFIEDYFVRYQGVREFLDQI 770

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           L +                                 +     R+     V+G        
Sbjct: 771 LEDCAKQK---------------------------FVETICGRKREIQGVRGGVQKQLNM 803

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                R           ++Q  + D++ + M N        ++   +++ +HDE+V E P
Sbjct: 804 ---PERTAI------NTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQIHDELVFEVP 854

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            T   ++G +    M         +PL  +      +
Sbjct: 855 LTALDTLGLIVREEMESAMD--LEVPLIVDMSSGLNW 889


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 185/700 (26%), Gaps = 158/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET S  P+           A +   ++A             +            +
Sbjct: 343 VAFDTETTSLDPM----------SARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEV 392

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKN 111
            + L  +L  +    +  N  ++  +     GI +       T + +       P  + +
Sbjct: 393 LARLKPWLESDRHAKLGQNLKYDAHVLLNH-GIRLGGIT-HDTLLESYVLESDKPHDMDS 450

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  +        GK                         A      Y   D + T
Sbjct: 451 LAKRHLGLTTIPYTEVCGKGAKQIG---------------FDEVALDCAAAYAAEDADVT 495

Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             L + L P  +            E     +   +   G  ID  L+ +  E + +    
Sbjct: 496 LRLHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLG 555

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275
           L+ +   L      +      L   LF    + ++  +      T + +L+         
Sbjct: 556 LEAEAHVLAGQPF-NLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQLAEDYPLP 614

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L+L   + +       + L   V+   GR+        A  TGR +      QN+P   
Sbjct: 615 KLLLEHRSLAKLKSTYADKLPRMVNPKTGRVHTCFSQATA-VTGRLASTDPNLQNIP--- 670

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+  IA     +V AD + IE R++A ++G
Sbjct: 671 ---------------------IRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSG 709

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++AFA GED++  T A+ F     +VS EQR   KV+   L Y   A         
Sbjct: 710 DARLLEAFAEGEDVHRATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAH-----GLA 764

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L +++ +        F  +     +   ++ +  +    + + G    L         
Sbjct: 765 KNLGIERGAAQAWIDRYFARYPGVADYMERIKAEAKDKGYVETVFGRRLHL--------- 815

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +        +                      ++                        
Sbjct: 816 PDIRAQQAGRRQAAERAAINAPMQGTAADLIKKAMI------------------------ 851

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                   A S  +R      +L                          +VL        
Sbjct: 852 --------AVSGWLRASGLKSRLV----------------LQVHDE---LVL-------- 876

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P     ++   L  LM      A  +PL  E      +
Sbjct: 877 EVPVAEVETLRAALPGLMGGVA--ALSVPLLVEVGVGNNW 914


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 206/700 (29%), Gaps = 158/700 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
           +   D ET S   +          +A +   A ++               +  A+  +  
Sbjct: 370 EFCFDTETTSLVAI----------EAELVGLALSYYAGEAYYVPFPADKAQTQAILEEFR 419

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L  E +  +  N  ++  + KK   I+I  + +  T + +         S+       
Sbjct: 420 GVLESENIKKIGQNLKYDITVLKKY-NIEIKGECF-DTMLASYLLDPDNRHSMDAMAEKY 477

Query: 116 LNFSEHLTKMEEGKA------LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           LN+S        GK                     Y    A+         EY    V A
Sbjct: 478 LNYSPVKIDTLIGKKSTKNTTQGNMRDVEVQKVVEYAGEDADITL---QLKEYFAPKV-A 533

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R + ++L      E  L  +   I   G RID   + +  E++ ++ K L++ I     
Sbjct: 534 ERPILEKLFKTV--EMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIY-TLS 590

Query: 230 GIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
           G + +      L   LF    +             T + +L+     ++ + ++  R   
Sbjct: 591 GEVFNIASPQQLGKVLFEKLNLMKNPPKTKTGQYATGEEVLTKLTDNEIVQQILEIR-EL 649

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  ++ L   VS  DGRL  +        TGR S      QN+P            
Sbjct: 650 QKLKSTYVDALPALVSKIDGRLHTSYNQAVV-ATGRLSSTNPNLQNIP------------ 696

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I   +   ++ AD + IE R++A  + ++  ++AF
Sbjct: 697 ------------IKTAKGREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMMEAF 744

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            NG DI+  T +K +   I +V+ + R +                               
Sbjct: 745 NNGTDIHTATASKIYKIDIQEVTADMRRMA------------------------------ 774

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                         +  +  +         + + K+  +  + +  ++  +   V +   
Sbjct: 775 --------------KTANFAILYGSSAFNLSAQLKISTSEAKKLIDSYYGEFSAVKKFKD 820

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           ++ +                                +      RR   + + G       
Sbjct: 821 EMIQKARQ--------------------------FEYAETFLGRRRYLAGINGGAMVSGQ 854

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSET 636
           A                + +Q  + D++   M +        K    ++L VHDE+V + 
Sbjct: 855 AER----------NAVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVFDA 904

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLK--AEGYEAKRY 673
             +    +   +  LM      A  LP++   E    K +
Sbjct: 905 HKSEIDFLKENVIKLMEN----ALLLPVRIGVEAGVGKNW 940


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 190/704 (26%), Gaps = 165/704 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP----S 55
            K+ +D+ET S  P           +  I   + A D+               +P     
Sbjct: 325 KKIALDLETTSLDPF----------EGKIVGISIAVDEGKAFYIPIAHVGAKNIPIESVK 374

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNA 112
             L+ L +       HN  F+     + LGI+     +  + + A          +L   
Sbjct: 375 KFLRDLFNSGKTVGGHNIKFDLKFISR-LGIEPQIPSF-DSMIEAYLLNPNEKKFNLDEL 432

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +    K  I  F                         +Y   D + + 
Sbjct: 433 SLKLLGHKMISYEDLV-KDTIPLFAG------------DFSYIPVDTAVKYSCEDADMSL 479

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            +   L PL             E  + L+   +   G   D+  +  L + + ++   L 
Sbjct: 480 RIHNLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALS 539

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----MSEGTLKSILSHSNITQLAKDL 277
             I ++T G   +      L   LF    +  V      +  T   +L +         L
Sbjct: 540 NRIFEIT-GEAFNLNSPKQLGYILFEKLKLPSVKSTSTGAYSTDVEVLEYLANEYEIAKL 598

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           IL            ++ +   V+ +  R+  +    G + TGR S      QNLP     
Sbjct: 599 ILEYRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTG-TATGRLSSSDPNLQNLP----- 652

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395
                                      +R  +    +G  ++ AD + IE RVLA I  +
Sbjct: 653 -------------------GRSDEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHITED 693

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              I AF   +DI++ T  K F    + +++  R I                    A   
Sbjct: 694 PNLINAFKENKDIHLETAKKLFGVSEEFITENMRRI--------------GKMVNFAIVY 739

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+                                   A +  L     + + +A+   ++
Sbjct: 740 GVSPY------------------------------GLAKRTGLDVKDTKKMIEAYLDYYK 769

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V +   ++ E                                       R+     +  
Sbjct: 770 NVQEYMANIKEFAKKNGYVRTMF--------------------------GRKRDIPQINS 803

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629
               +        R            +Q  + DI+   M    +          ++L VH
Sbjct: 804 KDQNIRAEG---ERIAI------NTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVH 854

Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
           DE+V E P+     V  L    M         +PL  + Y  K 
Sbjct: 855 DELVFEVPENEVEYVKKLVKEEMENAVK--LRVPLLVDIYVEKY 896


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 107/717 (14%), Positives = 196/717 (27%), Gaps = 185/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDL 57
           ++ +D ET +            A QA +   + + +                    P  +
Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389

Query: 58  ---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
                       L D +++ +  N  ++ I+  +  GI +    +  T +L+        
Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQP--FDDTMLLSYDLDAGRH 446

Query: 107 -SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +    L   +      K     GK+ I         +                   Y
Sbjct: 447 GHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAAT-----------------RY 489

Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T  L+  L P            + +R L  +   +   G  +D   +  L   
Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSH 267
            A +  +L+E+I  L             L   LF   G+     S+       +  +   
Sbjct: 550 FAHDISRLEEEIYALAGCRFL-ISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERL 608

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           +   ++    IL     S       + L   ++   GR+  +    GA +TGR S     
Sbjct: 609 AAEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGA-QTGRLSSTDPN 667

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G  L+ AD + IE 
Sbjct: 668 LQNIP------------------------IRTEIGREIRNAFIAKKGHLLLSADYSQIEL 703

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+ A +A E   ++AF   EDI+  T  + F      V +E RA  K +  A+ Y     
Sbjct: 704 RLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARAKTINFAILYG---- 755

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L++ +FS                                        + +
Sbjct: 756 -ISAWGLAARLEIDRFS---------------------------------------AQEM 775

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +   +        +                                 +  P  R
Sbjct: 776 IDRYFERFPAIRHYIDRTLDFVRLHGY--------------------------VETPFGR 809

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD--- 623
           +     +K        A     R+           +Q +S DI+   M            
Sbjct: 810 KTHLPAIKSRKVTERQAA---ERQAINAP------IQGMSADIIKRAMVRMEPALAKVGL 860

Query: 624 ----IVLTVHDEIVSETPDTPYFSVGTLCSL--MTKN-PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+        +     M    P     + L+ E      +
Sbjct: 861 SSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSW 917


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 193/699 (27%), Gaps = 153/699 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----TEQSAMPSDL 57
            +  D ET                ++ +   +++                     +  +L
Sbjct: 340 YIAFDTETSGKN----------VMESDLVGVSFSPKAGIAYYVPINGFSDDGTKDLLDEL 389

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LA 115
              L       +AHN+ F+ +   K  GI +    +  TS+ A      S  LK+     
Sbjct: 390 SPLLE-GGPKKIAHNAKFDYMALYKH-GIRVSPL-YFDTSIAAFLLNETSVGLKDLAATR 446

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L           GK    +               A+    ++LF           R+L  
Sbjct: 447 LGIQMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMTFRLFT--MLEKEIVERKLQD 504

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                   E  L  +   +   G  ID D +  L   + ++ + ++  I ++      + 
Sbjct: 505 LFY---TLEMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEIAGYEF-NL 560

Query: 236 RQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           +    L  +LF   G+           T  + L   +      DLIL+    +      +
Sbjct: 561 KSPQQLSKFLFQDLGLKGIRKTSKGYSTDAATLEALSGQHPVIDLILSYRQLTKLKDTYV 620

Query: 293 NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L   VS S GRL        A  TGR +      QN+P                    
Sbjct: 621 DALPLMVSRSTGRLHTNFSQTSA-VTGRLASSDPNLQNIP-------------------- 659

Query: 352 TIADPLGLASDCVRSCIIA----------SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                       VR   +A               L+ AD + IE RVLA +  E    +A
Sbjct: 660 ----IRSSLGKEVRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEA 715

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F+   DI+  T ++ F  PI+ V    R +GK +   +                G+   +
Sbjct: 716 FSRDIDIHALTASRLFGVPIESVDDNMRRMGKTINFGII--------------YGMSGFR 761

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A    L      L  K +  +   V   +
Sbjct: 762 L------------------------------ARDTGLEQREANLFVKRYMDQFPRVKAYF 791

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           + L +                                 +  P  RR    D+        
Sbjct: 792 EQLIKEAEKKGY--------------------------VETPLGRRRYLPDITSSNPQRR 825

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
            A  +               +Q ++ DI+ + M +             ++L VHDE++ E
Sbjct: 826 EAARRAA---------INMPIQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFE 876

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++        +   M+        +PL  E      +
Sbjct: 877 VAESQLDRAAEVIVREMSTAFD--LSVPLVVEAEYGPNW 913


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/717 (15%), Positives = 198/717 (27%), Gaps = 185/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDL 57
           ++ +D ET +            A QA +   + + +                    P  +
Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389

Query: 58  ---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
                       L D +++ +  N  ++ I+  +  GI +    +  T +L+        
Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQP--FDDTMLLSYDLDAGRH 446

Query: 107 -SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +    L   +      K     GK+ I         +                   Y
Sbjct: 447 GHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAAT-----------------RY 489

Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              D + T  L+  L P            + +R L  +   +   G  +D   +  L   
Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSH 267
            A +  +L+E+I  +  G          L   LF   G+     S+       +  +   
Sbjct: 550 FAHDISRLEEEIY-VLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERL 608

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
           +   +     IL     S       + L   V+   GR+  +    GA +TGR S     
Sbjct: 609 AAEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPN 667

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  IA  G  L+ AD + IE 
Sbjct: 668 LQNIP------------------------IRTEIGREIRNAFIAKKGHLLLSADYSQIEL 703

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+ A +A E   ++AF   EDI+  T  + F      V +E RA  K +  A+ Y     
Sbjct: 704 RLAAHVADEKALLQAFREKEDIHALTAKQLFG----HVDRESRARAKTINFAILYG---- 755

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L++ +FS                                        + +
Sbjct: 756 -ISAWGLAARLEIDRFS---------------------------------------AQEM 775

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +   +        +                                 +  P  R
Sbjct: 776 IDRYFERFPAIRHYIDRTLDFVRLHGY--------------------------VETPFGR 809

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGY 622
           +     +K        A     R+           +Q +S DI+   M        K G 
Sbjct: 810 KTHLPAIKSRKVTERQAA---ERQAINAP------IQGMSADIIKRAMVRMEPALAKAGL 860

Query: 623 ---DIVLTVHDEIVSETPDTPYFSVGTLCSL--MTKN-PSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P+        +     M    P     + L+ E      +
Sbjct: 861 SSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSW 917


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 194/699 (27%), Gaps = 155/699 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMP 54
            ++ +D ET S  P+           A +   + A+                      + 
Sbjct: 352 RQIGLDTETNSLDPMT----------AKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEIS 401

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNA 112
             L  +L D+ +  +  N  +++ +FK   GID+         + +      L  +L + 
Sbjct: 402 GSLKPFLEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIA-GDAMLASYIVESHLSHNLDDL 459

Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            +  L       +   GK                    +          EY  +D +   
Sbjct: 460 AMRWLGLETISYESLCGKGAKQ---------------ISFADVNVAQATEYACQDADFAL 504

Query: 172 ELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            + + L    D          E  +  +   +   G  +D   + +    +  E  +L++
Sbjct: 505 RIEQHLRTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQ 564

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKD 276
               L      +      L+  LF   GI              T +S+L           
Sbjct: 565 QAYDLAGQPF-NLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPK 623

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           LIL   + +       + L E ++   GR+        A  TGR +      QN+P    
Sbjct: 624 LILQNRSLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVA-ITGRLASNNPNLQNIP---- 678

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR    A +G  +V AD + IE R++A ++G+
Sbjct: 679 --------------------IRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGD 718

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
                AF N ED++  T A+ F    +K++ EQR   K +   L Y  G           
Sbjct: 719 ATLQAAFQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMG-----EYGLAK 773

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L +   S  +     F  +     +    ++   +F   + L G    L          
Sbjct: 774 SLGIDNVSAAMFIKRYFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYL---------P 824

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +         G                                        +  + +  
Sbjct: 825 DIHSNHAMKRAGAERAAINAPMQGTASDL-----------------------IKKAMIDV 861

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               +N  +                ++Q                    +VL VH      
Sbjct: 862 SKFLMNQKSRL--------------VMQ-------------VHDE---LVLEVH------ 885

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++    +   L  +M++  +    +PL AE    K +
Sbjct: 886 --ESELDWIQIKLPEIMSQVGAEVLNVPLLAEVGVGKNW 922


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 183/702 (26%), Gaps = 164/702 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   ++A +           +            + 
Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 396 ARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P             + E  + L+ + +   G  ID   +      IA     L
Sbjct: 499 QLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDL 558

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +     L  G   +      +    F    +         +  T + +L           
Sbjct: 559 EAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 618 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 672

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G ++V AD + IE R++A I+G+
Sbjct: 673 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 712

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y              
Sbjct: 713 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 767

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    +    E    + + G    L          
Sbjct: 768 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWL---------P 818

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                 A++ +L M      +                 
Sbjct: 819 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 860

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632
                                          RD       M          +VL      
Sbjct: 861 -------------------------------RD--KLASRMIMQVHDE---LVL------ 878

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             E PD     V   L  +M         +PL AE      +
Sbjct: 879 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 182/702 (25%), Gaps = 164/702 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   ++A +           +            + 
Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 396 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID   +      IA     L
Sbjct: 499 QLHCALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMRLVDL 558

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +     L  G   +      +    F    +         +  T + +L           
Sbjct: 559 EAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 618 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 672

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G ++V AD + IE R++A I+G+
Sbjct: 673 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 712

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y              
Sbjct: 713 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 767

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    +    E    + + G    L          
Sbjct: 768 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWL---------P 818

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                 A++ +L M      +                 
Sbjct: 819 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 860

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632
                                          RD       M          +VL      
Sbjct: 861 -------------------------------RD--KLASRMIMQVHDE---LVL------ 878

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             E PD     V   L  +M         +PL AE      +
Sbjct: 879 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 104/702 (14%), Positives = 184/702 (26%), Gaps = 164/702 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A +   +++ +           +            + 
Sbjct: 67  AFDTETTSLDPMV----------AQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVL 116

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 117 ARLKPWLESAERKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 174

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 175 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 219

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L   L P             + E  + L+ + +   G  ID   +      IA    +L
Sbjct: 220 QLHHALYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIEL 279

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 280 EGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 338

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   V+   GR+        A  TGR +      QN+P    
Sbjct: 339 LLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 393

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IAS G ++V AD + IE R++A I+G+
Sbjct: 394 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 433

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              ++AF+ GEDI+  T A+ F     +V+ +QR I KV+   L Y              
Sbjct: 434 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 488

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +     +    +    E    + + G    L          
Sbjct: 489 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRTVAKEKGYVETVFGRRLWL---------P 539

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                 A++ +L M      +                 
Sbjct: 540 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 581

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632
                                          RD       M          +VL      
Sbjct: 582 -------------------------------RD--KLASRMIMQVHDE---LVL------ 599

Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             E PD     V   L  +M         +PL AE      +
Sbjct: 600 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 637


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 92/703 (13%), Positives = 187/703 (26%), Gaps = 169/703 (24%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------MPSD 56
           +D ET S   +          +A +   + A+            Q           + + 
Sbjct: 329 LDTETDSLNFM----------EARLVGVSLAYQAGKACYIPLQHQDMSIPQLPLNLVLNK 378

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           +     +E +  V  N  ++  + K    +         T +++          +     
Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNY-DVTFKG-PIEDTMIMSYVIDSTESHGMDKLAK 436

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L+      +   GK +                       +      Y   D + T +L
Sbjct: 437 KYLDHDCISFESVVGKGVKQL---------------TFDQVSIDDAYLYASEDADVTLQL 481

Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           ++ L               + E    L    I   G  I   ++    + +  +   L+ 
Sbjct: 482 YEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLEN 541

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILSHSNITQLAKDLI 278
           +  ++ +    +      LR  LF    I         +  T + +L   +       +I
Sbjct: 542 EAYQIAEQPF-NLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEELSHDHALPKVI 600

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L   + S       + L + ++ +  R+  +     A  TGR +      QN+P      
Sbjct: 601 LEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVA-ITGRLASSEPNLQNIP------ 653

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR   IA+   ++V  D + IE R++A ++ +  
Sbjct: 654 ------------------IKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKDPG 695

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            + AF   EDI+ +T +  FNT    VS EQ                             
Sbjct: 696 LLDAFNQNEDIHRSTASAIFNTNDASVSSEQ----------------------------- 726

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                            + +  +  L         +    +   + +     +  K+ GV
Sbjct: 727 ---------------RRFAKVINFGLIYGMSAFGLSQTLNIDRNSAKNFIDQYFEKYPGV 771

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                                                           RRL    +    
Sbjct: 772 KNYMDQGKLVAKEQGYVETVF--------------------------GRRLWVPLINSSN 805

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631
                A  +               +Q  + D++   M N        K    +++ VHDE
Sbjct: 806 GIQRAAAERAAINA---------PMQGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDE 856

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V E P+     +   +  +M+   +    +PL A+      +
Sbjct: 857 LVLEVPNAELDIIKTEIPKIMSNVAT--LDVPLIADLGSGINW 897


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 192/701 (27%), Gaps = 158/701 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPS 55
           + +D ET S  PL             +   + A +                     ++  
Sbjct: 358 IALDTETTSTDPL----------NGALVGISLAVEPGTGYYLPVGHLTGEPQLPLESIRD 407

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L  +L D     V  N  ++ +   +  G++     +  T +             LK  
Sbjct: 408 ALAPFLGDPRKPKVGQNLKYDLLAL-RLAGMEAQGLAF-DTLLAEWLVDPASRALGLKEM 465

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   G     R                    +      Y   D E T 
Sbjct: 466 AERYLGVQMTRIEELIGTGKNQR---------------TMAQVSVAQVAPYAAADAEITL 510

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L   L              D E  L  +   +   G  +D+  + ++   ++Q   +++
Sbjct: 511 RLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIE 570

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLA 274
           ++I  L      +   T  L   LF    ++  D  +        T   +L         
Sbjct: 571 KEIYALVGHPF-NINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPV 629

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            DLIL     S      ++ L + V+   GR+       G S TGR +      QN+P  
Sbjct: 630 LDLILENRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTG-SVTGRLASSDPNLQNIP-- 686

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         VR+  IA  G  L+  D + IE R++A +A
Sbjct: 687 ----------------------TRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVA 724

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  + AF  G+DI+  T A  +  P++ V++E R   K +   L Y            
Sbjct: 725 NDEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMS-----AFGL 779

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
               DL          + FE +   +     ++ +       + L+G             
Sbjct: 780 SRSADLTLAEAENFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLK-NPA 838

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  +              +      +A  +  +             I LP + R   S  
Sbjct: 839 NPALKA------REEREAINAPIQGTAADIIKLAM-----------IRLPEALRAAGSRA 881

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           +                                                 ++L VHDE+V
Sbjct: 882 R-------------------------------------------------LLLQVHDELV 892

Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            E P         L   +M         +PL  E    K +
Sbjct: 893 LEVPREEMPGTAKLVQHVMETAYP--LQIPLTTEARWGKNW 931


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 100/701 (14%), Positives = 190/701 (27%), Gaps = 156/701 (22%)

Query: 1   MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----EQSAMP 54
           M    + +D ET S   L          +A +   + +                 +    
Sbjct: 364 MKATLVAVDTETTS---LKTC-------EAELAGISLSATPATASFISFARTGLSREKTI 413

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L   L +  +     N  ++ ++ K   G+++    +  T + +         +L + 
Sbjct: 414 ELLRPLLENPAIAKTGQNLKYDLLVLKNY-GLELSPISF-DTMLASYLLNPETTHNLDDL 471

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L           G            D  P   T             Y  +D +   
Sbjct: 472 AARHLKLRTTKYDELTGTGKTKLH---IDDVEPRKLTD------------YACQDADIAL 516

Query: 172 ELFKRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            L   L      E             L  +   +  +G  ID   +    E +  +  +L
Sbjct: 517 RLTAILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQL 576

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277
            E I     G   +      L   LF + G+     ++    T   +L            
Sbjct: 577 KETIH-SAAGESFNIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVGN 635

Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           +L   +        ++ L + ++   GR+  +   +  + TGR S      QN+P     
Sbjct: 636 LLEYRSLQKIKTTYIDALPKMLNPRTGRVHTSFNQH-ITATGRLSSSNPNLQNIP----- 689

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395
                                      +R   I       L+ AD + IE R+ A I+G+
Sbjct: 690 -------------------IRTPLGREIRKAFIPTDPRNLLLSADYSQIELRIAAEISGD 730

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              I+AF N EDI+  T    F+TP   ++ + R   K +   + Y       +      
Sbjct: 731 GKLIEAFRNREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYG-----IQPFGLSK 783

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L++ +       ++    +         ++    E      L+G          R    
Sbjct: 784 RLNIPRSEAADIISTYTAKYPGLFEALDTIKTTGREKGFVTTLLGR---------RRYLP 834

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +     +L +                                 ++L S R         
Sbjct: 835 NLSSRNGNLQKAAERAAMNTPIQGTAADIIKC-----------AMILCSKR--------- 874

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                                + E+ +Q+         M           L VHDE+V E
Sbjct: 875 ---------------------MKEHDMQSS--------ML----------LQVHDELVFE 895

Query: 636 TPDTPYFSVGTLCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673
           T      ++  L    M +       K +P++ +    K +
Sbjct: 896 TTPEEQENLSALVEEAMIEAAGMCGMKTVPVEVDCGTGKNW 936


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 104/694 (14%), Positives = 201/694 (28%), Gaps = 131/694 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQS-------AMP 54
           +  D ET    P          + A +   +  W +E   +       +         + 
Sbjct: 367 IAWDTETTGLNP----------QTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVL 416

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L   L ++    V  N+ F+R++     GI +       T + +          L + 
Sbjct: 417 EKLRPILENKCYPKVFQNAKFDRLVLLNQ-GIQLNGV-VFDTMLASYVINPDKSHKLSSL 474

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
           C     +   ++      L     +   D           + A+  F             
Sbjct: 475 CKQY-LTNISSQDYL--ELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKRLAEI 531

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            + ++L    + E+ L  +   + ++G  ID++ +  L E        L+E I +     
Sbjct: 532 PILEKLF--LEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIYEEAKEK 589

Query: 232 IRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF    +             T  +IL          D +L     S 
Sbjct: 590 F-NLESPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLKYRTLSK 648

Query: 287 SAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   V +   R+  +      + TGR S      QN+P              
Sbjct: 649 LQSTYIDNLPTLVSNQTHRIHTSFNQSV-TSTGRLSSSKPNLQNIP-------------- 693

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                          S  +R   I+     LV AD + IE R+LA ++ E   +KA+ + 
Sbjct: 694 ----------IRTELSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDC 743

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +DI+  +    F+   ++++ E+R +GK +   + Y  G++ F   A      +      
Sbjct: 744 QDIHTLSAQLLFDK--EEITIEERNLGKTINFGVIYGMGSQRFAREA-----GVTPTKGK 796

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                  + +++       ++ +         ++G         +   +           
Sbjct: 797 DFIKKYHQRYKKVFQFLENLKIEAITKGYVTTILGRRR------YFNFYSD--------- 841

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                  L          I L    +  YSD +   S       
Sbjct: 842 ----------------------SLRNLYGCNPDEINL-DELKYSYSDSQLLRSA------ 872

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
                           +Q  S DI+   M    K        ++L VHDE+V E P    
Sbjct: 873 ------------ANAPIQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDELVFEIPLEEL 920

Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             +   +  +M  +      +PL  E      + 
Sbjct: 921 EELQSEIKQIMENSVK--LTIPLLVEINSGINWM 952


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 199/704 (28%), Gaps = 162/704 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPS 55
           + +D+ET S  P+           A +   A A   +                    +  
Sbjct: 334 IALDVETTSTDPMT----------ARLVGIALATSGQRSFYVPVNHANDDEQLDADEVRE 383

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC- 113
            L   L D   +  AH+  ++ ++ ++  G   P   +  T + A   G  +  LK+   
Sbjct: 384 ALSPLLADPNTVVYAHHGKYDALVLERA-GYPRPRIAF-DTMIAAYLLGENALDLKSLAF 441

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L           G+                       +   Q  G+Y   DVEAT  L
Sbjct: 442 NRLGMEMTEITTLIGRGRNQL---------------TMDLTDVQAAGDYACADVEATYRL 486

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            + L P  +           E  L  +   +   G  +D+DL+  L   +  +  +L+ +
Sbjct: 487 VEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELERE 546

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILN 280
           I  L      +   T  L   LF   G+             + +L +        D IL 
Sbjct: 547 IYGLAKHEF-NINSTRQLATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCILE 605

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L E V+   GR+  +     A  TGR S      QN+P        
Sbjct: 606 YRQLLKLKSTYVDALPEQVNPETGRIHTSFNQTIA-ATGRLSSTDPNLQNIP-------- 656

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGK-------KLVVADLAGIEARVLA 390
                                   VR   IA    G         L+ AD + IE R++A
Sbjct: 657 ----------------VRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMA 700

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G++  + AF  G+DI+  T A  F  P+++V+ + R + K +   + Y       + 
Sbjct: 701 HLSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGM-----QA 755

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                   + +                  +     + Q  +      + G          
Sbjct: 756 YGLARDTGMSRQDAQRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYT----- 810

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +     +       +                          +        ++  
Sbjct: 811 ----PDIDSSNVNRRLAAERMA---------------------INMPLQGSAADIMKIAM 845

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
             V  +         + +R R                      M           L VHD
Sbjct: 846 IRVHDE------MRRRGLRSR----------------------ML----------LQVHD 867

Query: 631 EIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ E P +   ++  L   +M K  +    +PL  E      +
Sbjct: 868 ELLFEVPRSELRTMADLAVDVMEKVVT--LNVPLVVEVAAGANW 909


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 99/696 (14%), Positives = 185/696 (26%), Gaps = 159/696 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
              D ET +  P           QA +   ++A           +        L     D
Sbjct: 364 FAFDSETTALNP----------RQAELVGLSFATKAHSGWWVPASS--EALDALRPLFAD 411

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALNFSE 120
            ++  + HN  F+  +        +       T +           +L       L +S 
Sbjct: 412 NSITKIGHNLKFDLAILAAQS-CPVDG-PCYDTMLAHALIEPEQRHNLDTLAEDYLRYST 469

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                             +    P D +  +     Q   +Y   D + T +L++   P 
Sbjct: 470 IRFSEL---------MPDAKKGSPLDYSSVD----PQALADYATEDADVTLQLWECFKPK 516

Query: 181 SDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +           E  L  +   +   G R+  + + +   ++  +   L + +      
Sbjct: 517 LEESGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVLEGQIATLKDAVYAAAGR 576

Query: 231 IIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285
              +      L   LF    + D    ++     T + +LS           +L     S
Sbjct: 577 EF-NLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSLAPKHPIVADLLEYRQLS 635

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 ++ L  AV    GR+         + TGR S      QN+P             
Sbjct: 636 KLKSTYIDALPNAVDPVSGRVHTHYGQVQ-TATGRLSSNDPNLQNIP------------- 681

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +   G  L+ AD + IE R+LA +  ++  + AF  
Sbjct: 682 -----------VRSAQGREIRKAFVPREGWTLLAADYSQIELRILAALTADEGLLTAFRE 730

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G DI+  T AK F    D VS++QR+  K++   + Y               L       
Sbjct: 731 GRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYG-----ISAFGLAQRLG------ 779

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +  T  + +   + A+  G+    +  
Sbjct: 780 --------------------------------TVSRTEAQNIIDNYFAQFPGIPGYMQAQ 807

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E                                       RR    D+        T  
Sbjct: 808 QESARAKGYVATV--------------------------CGRRRYLRDINSGN---GTIR 838

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
           +   R            +Q  + D++   M               ++L VHDE++ +   
Sbjct: 839 AAAERNAI------NMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAP 892

Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               ++  L +  M      A   P++ E      +
Sbjct: 893 GEESALRQLVTGGMQDALQLA--CPIEIEIGTGMNW 926


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 213/690 (30%), Gaps = 137/690 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MPSD 56
             +D+ET S  P              I   + ++  +         ++A       + S 
Sbjct: 320 FALDLETSSLDPF----------NCEIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSK 369

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
           L + L D +   V  N  ++  +     GI  P      T + A          +L++  
Sbjct: 370 LKEILEDPSSKIVGQNLKYDYKVLM-VKGIS-PVYPHFDTMIAAYLLEPNEKKFNLEDLS 427

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L +     +     +    F     D P       +   A   +  Y    ++    
Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFADVPVDKAANYSCEDADITYRLYKILSMKLHEA 486

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           EL      +   E  L  +   +   G  +D + + KL E   ++ ++L E I ++    
Sbjct: 487 ELENVFYRI---EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQIAGEP 543

Query: 232 IRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286
             +      +   LF   GI      ++     T   +L           LIL       
Sbjct: 544 F-NINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILEYRKIQK 602

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++TL + V+   GR+  +    G + TGR S      QNLP              
Sbjct: 603 LKSTYIDTLPKLVNPKTGRIHASFHQTG-TATGRLSSSDPNLQNLP-------------- 647

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R  I+       +V AD + IE R+LA ++G++  +KAF  
Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEE 697

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ +N   ++V++E R +GK++  ++ Y               L +     
Sbjct: 698 GIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTP-----YGLSVRLGIPVKEA 752

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                S F  + +  S+   +  +  E      L G   ++ +   R K+          
Sbjct: 753 EKMIISYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKN--------TQ 804

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
           +EG    +      +A  +                       +L   D+  +    N   
Sbjct: 805 SEGERIAINTPIQGTAADII----------------------KLAMIDIDEELRKRN--- 839

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS- 643
                                    +   M           + VHDE+V E PD      
Sbjct: 840 -------------------------MKSRMI----------IQVHDELVFEVPDEEKEEL 864

Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V  + + MT        +PL+ +    K +
Sbjct: 865 VDLVKNKMTNVVK--LSVPLEVDISIGKSW 892


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 143/695 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55
           +L ID ET S            A Q  +   + +             +         +  
Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIK 394

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L D++V  +  N  F+ I+  K  GI++       T +++          ++   
Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKQ-GINMN--SMEDTMLMSYVLDAGKNRHNMDTL 451

Query: 113 CL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L       K     GK  I         +  Y    A+       +  Y       
Sbjct: 452 SEIHLQHKTISFKEIVGTGKKEINFSDVELDKAMEYAAEDAD-----ITYRLYKIFSKNL 506

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E    +  +   E+ L  +   +   G +ID   +  L E   ++  KL++++ K++ 
Sbjct: 507 KLEKLTNIYEI--FEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISK 564

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLAS 284
               +      L   ++    I ++  +      T  S+L            LIL+    
Sbjct: 565 KEF-NIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQV 623

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           S       + L E ++ + +   T     A+ TGR +      QN+P             
Sbjct: 624 SKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIP------------- 670

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G  L+ AD   IE R+LA +A      KAF+N
Sbjct: 671 -----------IKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSN 719

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T ++ FN  I KV ++ R   K +   + Y               +++     
Sbjct: 720 NEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYG-----ISQYGLAKQINVSNHEA 774

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           +    + F  + + + +         +      + G          R+   G+     ++
Sbjct: 775 DEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR---------RSHFNGINDKNFNV 825

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                          +                                       +    
Sbjct: 826 RNFQERAAINAPIQGSASEIM-------------------------------RLAMIRLN 854

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +    +    K+                           +L +HDE++ E P     ++
Sbjct: 855 KKFESIKNNKSKI---------------------------LLQIHDELIFEVPVKEVKNI 887

Query: 645 GTLCS-LMTKNPSWAKGL-----PLKAEGYEAKRY 673
             +    MT        L     PL  +      +
Sbjct: 888 TEIIKDEMTSVTE--SDLHTFSTPLTVDVNTGDNW 920


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 110/717 (15%), Positives = 189/717 (26%), Gaps = 184/717 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
            + ID ET S            A QA +   +                            
Sbjct: 339 FIAIDTETSSTD----------ATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQI 388

Query: 52  ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
                   +     D +V+ +  N  F+ I+     GI I       T V++        
Sbjct: 389 PVAEALERIKALCEDPSVLKIGQNLKFDMIVLG-ERGISIAPH--DDTIVMSFDLDAGLH 445

Query: 107 -SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              +       L+ +    K   G                       H    +    Y  
Sbjct: 446 GHGMDELAATHLSHTCLAFKEVVGTGKKQLG---------------FHEVDLKTATRYAA 490

Query: 165 RDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T  L+KR       E          R L  +   +  RG ++D + + +L    A
Sbjct: 491 EDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLSTEFA 550

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSH 267
            +   L+ +I  L             L   LF   G+      +        T    L+ 
Sbjct: 551 GQIAGLEGEIHTLAGTPFT-IGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTELERLAR 609

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
               ++ + ++  R   S       + L   ++   GR+  +    GA +TGR S     
Sbjct: 610 DGGEEIVRKILEWRQ-LSKLKSTYTDALQAQINPKTGRVHTSYSLTGA-QTGRLSSTEPN 667

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   IA +G  L+ AD + IE 
Sbjct: 668 LQNIP------------------------IRTEVGRQLREAFIAEDGHVLIAADYSQIEL 703

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+ A +A       AFANG+DI+  T  + F     +V+++ R   K +  A+ Y     
Sbjct: 704 RLAAHMADVPALRDAFANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILYG---- 755

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     LD                                       +     + +
Sbjct: 756 -ISRWGLAGRLD---------------------------------------VSADEAQAM 775

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +  G+ +   +                                          R
Sbjct: 776 IDRYFERFPGINRYIAETLSSVREKG--------------------------FTETLFGR 809

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---- 622
           +  +  +               R            +Q  S DI+   M            
Sbjct: 810 KTHFPRIASRNQGERQGA---ERAAINAP------IQGTSADIIKRAMVRMEPALAAAGL 860

Query: 623 ---DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA--KGLPLKAEGYEAKRY 673
               ++L VHDE+V E P+    + G +   +M      A    +PL  E    K +
Sbjct: 861 GHVRMLLQVHDELVFEAPEADAEAAGAVIREVMAGAAEPAVKLSVPLGVEIGVGKNW 917


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 105/714 (14%), Positives = 183/714 (25%), Gaps = 170/714 (23%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
             + ID ET S  P+          QA +   +               +            
Sbjct: 423  IIAIDTETSSLDPM----------QAELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGAD 472

Query: 51   --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                        + L   L    V+ +A N+ F++++  +     I       T +L+  
Sbjct: 473  LVPGQLDSDETLARLKPMLEAPDVLKIAQNAKFDQLVLAQR---GIRLAPVDDTLLLSYV 529

Query: 103  NGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                     +                   G                          A   
Sbjct: 530  LDAGRTDHGMDVLAEKYFGHRPIQFGAVAGSGRTFIG---------------FARVALDK 574

Query: 159  FGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLK 208
              EY   D + T  L++ L P    ER           +      +  RG  ID  ++ +
Sbjct: 575  ATEYSAEDADVTLRLWRVLKPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSR 634

Query: 209  LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSI 264
            L    AQ+  +L+  I +L  G   +      L   LF   G+         +  T   +
Sbjct: 635  LSGEFAQDMARLEAVIFELA-GESFNLGSPKQLGDILFGKMGLAGARKTATGAWSTAAGV 693

Query: 265  LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
            L             IL+    S       + L   V+   GR+  +     A+ TGR S 
Sbjct: 694  LDDLAEQGVPLAARILDWRQLSKLKSTYTDALPSYVNPETGRVHTSYALA-ATTTGRLSS 752

Query: 323  CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                 QN+P                            A   +R   IA  G+KL+ AD +
Sbjct: 753  SEPNLQNIP------------------------VRNEAGRKIRKAFIAPPGRKLISADYS 788

Query: 383  GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
             IE R+LA IA       AFA   DI+  T ++ F  P++ +  E R   K +   + Y 
Sbjct: 789  QIELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYG 848

Query: 443  GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                          L + +          FE +    ++    +    E      + G  
Sbjct: 849  -----ISAFGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRK 903

Query: 503  CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            C          +  +                      +                      
Sbjct: 904  CH---------YPRITASNPSERAFNERAAINAPIQGSA--------------------- 933

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
                             +      L +               +S     + +        
Sbjct: 934  ----------ADIIRRAMVRMDEALEKA-------------GLSA----QMLLQVHDE-- 964

Query: 623  DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPS--WAKGLPLKAEGYEAKRY 673
                     +V E PD     ++  +  +M   P       +PL+ +   A+ +
Sbjct: 965  ---------LVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNW 1009


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 186/700 (26%), Gaps = 160/700 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET S  P+           A I   +   +           +            + 
Sbjct: 343 SFDTETTSLDPMV----------AQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLPRDEVL 392

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L +     V  +  ++  +      I +       T + +          + + 
Sbjct: 393 AKLKPWLENPARKKVGQHLKYDAQVLANY-DIALNGVE-HDTLLESYVLESHRTHDMDSL 450

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A  +   Y   D + T 
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVALDVAAAYAAEDADITL 495

Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + + P            ++ E  +  + + +   G  ID   +      IA    +L
Sbjct: 496 QLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGRLEAQSREIAVRLVEL 555

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           + +   L  G   +      +    F    +         +  T + +L           
Sbjct: 556 EREAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614

Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           L+L     S       + L   ++ S GR+        A  TGR +      QN+P    
Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMINASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA+ G K+V AD + IE R++A I+G+
Sbjct: 670 --------------------VRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGD 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  ++AF+ GEDI+  T A+ F     +VS +QR I KV+   L Y              
Sbjct: 710 ESLLRAFSQGEDIHRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMS-----AFGLAS 764

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +  +     F  +    ++    +         + + G    L          
Sbjct: 765 NLGITRDAAKLYIDRYFARYPGVANYMETTRASAKAQGYVETVFGRRLWL---------P 815

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +                 A++ +L M      +                 
Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLE---------------- 857

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATKNGYDIVLTVHDEIVS 634
                                          RD L   M          +VL        
Sbjct: 858 -------------------------------RDGLRSRMIMQVHDE---LVL-------- 875

Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E PD     V   L  +M+        +PL AE      +
Sbjct: 876 EVPDAELALVREKLPEMMSGVAK--LKVPLVAEVGAGTNW 913


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 199/706 (28%), Gaps = 158/706 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     L           A +   + + +         T +            
Sbjct: 346 YVAVDTETTGLDELT----------AELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDD 395

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L D  ++ +  N  ++  +F + LGI +       T +++  
Sbjct: 396 LAPGQMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAP--IDDTMLMSYA 452

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ +        D+ PY    A+  ++ 
Sbjct: 453 MHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKSAVTFDKVPMEDAVPYAAEDADVTLRL 512

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           W+LF     R  E T ++++ L      ER L  +   +   G  +D D + ++    AQ
Sbjct: 513 WKLFKPQLHR-AEVT-KVYETL------ERPLVPVLAQMERAGILVDRDTLSRMSNAFAQ 564

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT 271
           +   L+ DI +L  G   +      L   LF   G+D           T   +L      
Sbjct: 565 KMAGLEADIHELA-GETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLEDLATE 623

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +L+    S       + L + V+++ GR+       GA  TGR +      QN+
Sbjct: 624 HDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIAGA-ATGRLASTDPNLQNI 682

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 683 P------------------------IRSEEGRRIREAFVAPEGKVLVALDYSQIELRILA 718

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA  D   +AF  G+DI+  T ++ F+ P+D+++ E R   K +   + Y         
Sbjct: 719 HIAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYG-----ISG 773

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L + +          FE +    ++    +    E      L G          
Sbjct: 774 FGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINT----- 828

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +              +                                      
Sbjct: 829 ----PNIGAKGPQAGFAARAAINAPIQ--------------------------------- 851

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                      TA   + R      +           D+  + +               D
Sbjct: 852 ----------GTAADVIRRAMIRMPEAI--------ADLPAKMLLQVH-----------D 882

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           E++ E       ++      +M     P     + L  +      +
Sbjct: 883 ELLFEVEKGAEDALIAAAREVMENANDPVVKLDVKLTVDAGVGANW 928


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 109/718 (15%), Positives = 199/718 (27%), Gaps = 171/718 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQ---- 50
           +  D ET S            A QA +   A A  D                   +    
Sbjct: 401 IAFDTETTSLD----------AMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVG 450

Query: 51  ---------SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                    + +P       L   L DE+V+ VA N  ++ +L K+     + +K +  T
Sbjct: 451 DLLGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDT 507

Query: 97  SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            +++           +       L  +    K   G                        
Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANITFD 552

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
           +        Y   D + T  L+  L P              ER L  +   +  RG  +D
Sbjct: 553 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 612

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
             ++ +L   +AQ   +L+++I     G   +      L   LF   G+     ++    
Sbjct: 613 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 671

Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T  S+L             I++    +       + L   V  + R   T     ++ T
Sbjct: 672 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETRRVHTSYSLASTTT 731

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  I++ G KL+
Sbjct: 732 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 767

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA +A      KAF +G DI+  T ++ F  P++ +  E R   K +  
Sbjct: 768 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 827

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L +++          FE +     +    +    +    + 
Sbjct: 828 GIIYG-----ISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVET 882

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G      +   R+ +  V                +G +    R A +           
Sbjct: 883 IFGRRINYPEI--RSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKMEPALAEAGL 937

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             +   +                                 +   
Sbjct: 938 -----------------AERVRM---------------------------------LLQV 947

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
                 ++  V DE           ++  + S+M     P+    +PLK +   A  +
Sbjct: 948 HDE---LIFEVEDE-------DVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 995


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/699 (16%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----SD 56
              D E  S   L  VG         +   A A                  +P     + 
Sbjct: 359 FAFDTECTS---LQAVGSH-------LVGIALAIAPNDAYYVPVGHEEGEQLPLADVVAA 408

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLA 115
           L     D  +   AHN+ F+  +     G+ I        T + A   G    LK+    
Sbjct: 409 LGPLFADPNIPKFAHNAKFDAEVLA---GVGIQVAGLAFDTMIAAAMLGKRQGLKDLAFY 465

Query: 116 ---LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              L       +   G+    I+        + PY    A H                A 
Sbjct: 466 ELKLPEPPTTIEDLIGRGSKQISFAAVPIEQAAPYAAADALHTLLLTETLRGQLTTDTAL 525

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R+L+ R+      E  L  +   +   G  +D + + +L +  AQ   +L E I     G
Sbjct: 526 RDLYYRV------ELPLIDVLTDMELTGILLDHEYLRELGKRFAQRIAELTEQIYAKAGG 579

Query: 231 IIRSSRQTYALRMYLFLITGI--------DLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
              +      L   LF   GI         L          +L   +        IL   
Sbjct: 580 PF-NINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELSQLYPIAADILAYR 638

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +      ++ L + V+   GR+  +    GA  TGR S      QN+P          
Sbjct: 639 QLTKLKSTYIDALPQLVNPRTGRIHTSYNQIGA-ATGRLSSNNPNLQNIP---------- 687

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A+ G + V AD + IE RVLA I+G++  I A
Sbjct: 688 --------------VRTEEGREIRRAFVAAPGHRFVAADYSQIELRVLAHISGDENLIAA 733

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G DI+  T ++ F    D+V K QR + K +                    G+    
Sbjct: 734 FQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVF--------------GVIYGIS--- 776

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A +  +       +      +  G+ +  
Sbjct: 777 ---------------------------AFGLAQRLGIERDLARQLIDNLFEQFPGIRRYI 809

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
                                        +   ++  ++     RR V  D++   +   
Sbjct: 810 DQ--------------------------TLAFGRQHGYVQTLFGRRRVMEDLRASGARRA 843

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
            A  +               +Q  + DI+   M    +          ++L VHDE+++E
Sbjct: 844 AAERE----------AINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAE 893

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+    +   L   +M+        +PL         +
Sbjct: 894 APEEEVPAAAHLLREVMSNTYQLV--VPLGVNLETGPNW 930


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 200/699 (28%), Gaps = 149/699 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAM-- 53
             +  D ET S              +A +   + + +                    +  
Sbjct: 349 KIVAFDTETDSLN----------THEANLVGFSLSVEKGKGIYVPVILSGGMFAPETISK 398

Query: 54  ---PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGL---- 105
               + L +   ++ +  V HN  F+  +     G+   ++ +   T + A         
Sbjct: 399 KDCLAVLEKLFAEKELTLVMHNGKFDLEVLA-ANGMSAKTECKIFDTMIAAWLLNPAASG 457

Query: 106 --PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             P SL+      L       K    K            +  Y    ++          Y
Sbjct: 458 KSPYSLEFLAETKLGLKGIEFKDIVQKNQ-TFADVPLEKAFKYGAEDSDF-----TLQLY 511

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                E  +   ++L    + E  +  +  ++  +G  +D   + + ++ +A    + ++
Sbjct: 512 YLLKDEIKKSNLEKLF--YEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAVLISEKEK 569

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS--NITQLAKDL 277
           +I K       +      L+  LF    +     ++    T  ++L     +       +
Sbjct: 570 EIYKEAGCEF-NIASPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFSTNDPLPKM 628

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           IL+  + +      +  L      +GR+  +    G + TGR S      QN+P      
Sbjct: 629 ILDYRSYTKLQSTYVEALPLLADKNGRIHTSFLQTG-TATGRLSSRDPNLQNIP------ 681

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                 +   +RS   A  G  L+ AD + IE  VLA ++G+  
Sbjct: 682 ------------------VRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKN 723

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
              AF NG D++ +T A  +    ++V  EQR   K +   + Y   A           L
Sbjct: 724 LCSAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANE-----L 778

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +          F  +   +      +    E    + + G          R     +
Sbjct: 779 NISRTEAKNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGR---------RRYIPEI 829

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               K + +G   +                                              
Sbjct: 830 KSSSKIVLQGAERI---------------------------------------------- 843

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSE 635
             +NT             K     VQA              K+G    ++L VHDE++ E
Sbjct: 844 -AINTPIQG---SAADIVKTAMIKVQA-----------ALEKSGTGAKMLLQVHDELIFE 888

Query: 636 TPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+     ++  +   M         +PL+      K +
Sbjct: 889 CPEDNAGNAISIIQREMENAVQ--LKIPLRVSVERGKNW 925


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 101/716 (14%), Positives = 185/716 (25%), Gaps = 179/716 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           +  D ET +               A +   + A                           
Sbjct: 380 VAFDTETDALSSAT----------AGLCGVSLAIAPGEACYIPVGHCEKEGLALEAAADL 429

Query: 53  -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                  + + L   L D  V+ VA N+ ++  +  +     I       T +++     
Sbjct: 430 VQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVSPIEDTMLISYVLEA 486

Query: 106 P---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L       K   G        K                        
Sbjct: 487 GLHGHGMDELSELWLGHKPIPFKQVAGTGKAQISFKHVA---------------LSEATA 531

Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L++ L P    E          R +  +   + + G ++D + + +L  
Sbjct: 532 YAAEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSN 591

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSILSH 267
             +    + +    +L      +      +   LF    +  G         T   +L  
Sbjct: 592 EFSLRMAEFEARATELVGRPF-NLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLES 650

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
             +      ++L+    S         L  A++   GR+  +     A+ TGR S     
Sbjct: 651 LALEHELPRVLLDWRQLSKLKGTYTENLVAAIAERTGRVHTSYALA-ATTTGRLSSSDPN 709

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   IA  GK L+ AD + IE 
Sbjct: 710 LQNIP------------------------VRTEEGRKIRKAFIAPQGKVLISADYSQIEL 745

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA I       +AF  G DI+  T ++ F+TPI+ +    R   K +           
Sbjct: 746 RLLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN---------- 795

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   A +  +        
Sbjct: 796 ----FGIVYGIS------------------------------AFGLANQLGIPQGEAGAY 821

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            K +  +  G+                                                R
Sbjct: 822 IKTYFERFPGIQAYMDATKAFVREHGYVTTIF--------------------------GR 855

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG- 621
           ++   +++              R            +Q  + D++   M          G 
Sbjct: 856 KINIPEIQAKSVGQRQFA---ERAAINAP------IQGAAADVMRRAMIRMPEALQAAGL 906

Query: 622 -YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E P+    +    + ++M K   P+ A  +PL  E   A  +
Sbjct: 907 SARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAVALSVPLTVEVRAAHNW 962


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 100/686 (14%), Positives = 195/686 (28%), Gaps = 133/686 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET     L           A +   +++++          E       +    + 
Sbjct: 377 VCFDTETTGIDAL----------HAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVP 426

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +  +E +  +  N  ++  +     G+ +  K    T +           ++       L
Sbjct: 427 FFENENIEKIGQNLKYDLKILSNY-GVTVKGK-LFDTMIAHYLINPDMRHNMDILAETYL 484

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +S    +   GK    +      D P  D        A            E  +   K+
Sbjct: 485 KYSPKSIETLIGKKGKNQLSM--RDVPLEDIKEYAAEDADVTLQLKEIFTAELEKTETKK 542

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E  L  +   +   G R+D++ + ++ + +  E K L+E I +       +  
Sbjct: 543 LFD--EIEIPLVSVLADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYETAGEKF-NLA 599

Query: 237 QTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
               L   LF    I              T + +L++          IL+          
Sbjct: 600 SPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQMVKLQST 659

Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +  L E V     R+        A  TGR S      QN+P                  
Sbjct: 660 YILALPEQVDKKTLRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------ 700

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +A      L+ AD + IE R++A ++GE+  I AF NGEDI
Sbjct: 701 ------IRTERGRQIRKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGEDI 754

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T AK F+  +++VS+EQR+  K +   + Y                 L +       
Sbjct: 755 HRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVS-----AFGLSNQTSLSRSESAALI 809

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            + ++ + + +S+     D   E      ++G          R   + +      +    
Sbjct: 810 DAYYKTYPRLKSYISEQVDFAREKGYVQTILGR---------RRYLKDINSANAVVRSAA 860

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                          ++   ++       N  +    
Sbjct: 861 ERNAVNAPIQGSAADVI---------------------KIAMINIHKKLREENWKSK--- 896

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-L 647
                                              ++L VHDE+V +  +     +   +
Sbjct: 897 -----------------------------------MLLQVHDELVFDVHNDELEKIQPMI 921

Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              M         +PL+ E    K +
Sbjct: 922 KHEMENAFK--MSVPLEVELGLGKDW 945


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 137/439 (31%), Positives = 213/439 (48%), Gaps = 20/439 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L +D+ET S   L K GV+ Y+E     I L AY+ D  PV++ D      +P+++L
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116
             L DETV+  A N+ FER+   + LG+D  +  + W CT V   T GLP SL      L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 NFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172
             +    K+ EGK LI  FC     +  +        +H    W  F  Y  RDVE    
Sbjct: 121 GLN--KQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178

Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  +L   P+ D     + LDQ INDRG  ID D V    +L    +  L++ + +LT  
Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTGL 238

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +      +R +L    G++   + +  +  +L       L + L+L R   + S++ 
Sbjct: 239 E--NPNSVLQMRGWLLDH-GLETESLGKKAVDELLEQPIDENLKQVLVL-RQQLAKSSVK 294

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +     SD R RG  QFYGA+RTGR++G     QNLP+   S+    +++   +  
Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNF 354

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           E       +   + S+ +R+  +   G K +V+D + IEARV+AW++GE W+ + F NG 
Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414

Query: 407 DIYVTTYAKAFNTPIDKVS 425
           DIY  + ++ F  P++K  
Sbjct: 415 DIYCASASQMFGVPVEKHG 433


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 101/721 (14%), Positives = 176/721 (24%), Gaps = 185/721 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------------- 49
            D ET +               A +   + A           T                 
Sbjct: 372 FDTETDALSST----------HAGLCGVSLAVGPNEACYIPLTHEHEPTGDGGLDFGDGG 421

Query: 50  ----------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                     +    + L   L D +V+ V  N  ++  +  +     +         ++
Sbjct: 422 DARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMARR---GVRVAPIDDVMLI 478

Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           +           +       L       K   G     +  K                  
Sbjct: 479 SYVLEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQKSFKHV---------------E 523

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDL 205
            +    Y   D + T  L + L P    E          R +  +   +   G R+D D 
Sbjct: 524 LKSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDR 583

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261
           +  L     Q   +L+E+  KL      +      +   LF    +     +      T 
Sbjct: 584 LRSLSSTFGQRMAELEEEAHKLAGRPF-NVGSPRQIGEILFGEMNLPGGKKTASGQWGTD 642

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            S+L     +      IL+    S       + L  A+        T     A+ TGR +
Sbjct: 643 ASVLEDLAQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRLA 702

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IAS G  L+ AD 
Sbjct: 703 SSDPNLQNIP------------------------IRTETGRQIRQAFIASPGHVLISADY 738

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA I       +AF +G DI+  T ++ F  P++ +  E R   K +      
Sbjct: 739 SQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINF---- 794

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     +                                  +   
Sbjct: 795 ----------GIIYGISAFGLAAQ------------------------------LGIDQG 814

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +  +  G+                                          + 
Sbjct: 815 EAGAYIKTYFERFPGIRDYMDRTKALVKEQG--------------------------FVT 848

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617
               RR+    +               R            +Q  + DI+   M       
Sbjct: 849 TVFGRRIHIPAIHSKSGAERQFG---ERAAINAP------IQGAAADIIRRAMIRMPGAL 899

Query: 618 TKNGY--DIVLTVHDEI-VSETPDTPYFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672
            + G    ++L VHDE+           +V  +  +M     P+ A  +PL  E   A  
Sbjct: 900 AEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIMEGAALPAVALSVPLDVEAKAAGN 959

Query: 673 Y 673
           +
Sbjct: 960 W 960


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 100/712 (14%), Positives = 183/712 (25%), Gaps = 168/712 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           L ID ET S   L           A +   + A                           
Sbjct: 379 LAIDTETDSLDAL----------NANLVGLSLAVAPGRACYVPLRHGPPPGSGDLLAEAP 428

Query: 53  ----------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                     +   L   L D  V+ + HN+ ++  +  +     +       T +++ +
Sbjct: 429 AAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYS 488

Query: 103 NGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    +       L           G                          A   
Sbjct: 489 MDAGRHGHGMDELSLRHLGHRPIPFDEVTGTG---------------RARIPFSQVALDK 533

Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
              Y   D + T  L++ L P              ER +  + + +   G ++D   + +
Sbjct: 534 ATAYAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELAR 593

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSI 264
           + E  +Q    L+++I +L      +      L   LF    +      +     T  S+
Sbjct: 594 IGEDFSQRMVVLEQEIHELAGKPF-NVGSPKQLGEILFDEQKLPGGKRGKNGAWGTDASV 652

Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           L             +L+    +      +  L+  +   DGR+         + TGR S 
Sbjct: 653 LEDLAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSMAV-TSTGRLSS 711

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   +A  G  L+ AD +
Sbjct: 712 TEPNLQNIP------------------------IRTEEGVRIRRAFVAEPGHVLLAADYS 747

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A       AFA GEDI+  T A  F    DKV KE R   K +   + Y 
Sbjct: 748 QIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYG 807

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L +          + F  +         ++ +  E        G  
Sbjct: 808 MS-----AFGLAARLGIGPGEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGRK 862

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             +     + +         +          +GG+    + A               + +
Sbjct: 863 LWIDGIQAKEQ-----ARRGNAERAAINAPFQGGAAEIIKRAM--------------VRM 903

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
           P++ R                                     +S       +        
Sbjct: 904 PAALRAA----------------------------------GLSA----RMLLQVHDE-- 923

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++ E P+    +    +  +M    +    +PLKAE      +
Sbjct: 924 ---------LLFEVPEAEVDATAECVRQVMESVAT--LRVPLKAEIGHGANW 964


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 184/659 (27%), Gaps = 147/659 (22%)

Query: 32  LCA---YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             +    A  ++ + L    +    P+   L     +  +    H++    +      GI
Sbjct: 348 GISRIFVAVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAK-SALWMLHHHGI 406

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++ S  +  T V A      +S                   G  LI    +      P +
Sbjct: 407 ELKSLAF-DTMVAAYLLNPTAS-------------------GYDLIDLALEHLGIVLPVN 446

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              +   +A  +     +   +   +   RL    + E  L  +   +   G  +D   +
Sbjct: 447 GEVSLAAKADAILKLAGELVKKLHLQEEDRLY--FEVELPLVQVLADMEMAGVTVDKQGL 504

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++   +    + L   I  L      +      L   LF    + +   ++    T   
Sbjct: 505 KEMSAELHDMIESLAHRIHTLAGEDF-NINSPKQLGHILFEKLKLPVYKKTKTGYSTDAE 563

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +L           LIL     +       + L+  V    GRL  T      + TGR S 
Sbjct: 564 VLEKLAEEHEIVALILEYRQLAKLKSTYTDGLAALVDPQTGRLHSTFHQTV-TATGRLSS 622

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                            +   +R   +    G  ++ AD 
Sbjct: 623 AEPNLQNIP------------------------IRLESGRRIRKVFVPRQKGNLILTADY 658

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++ +   ++AF  G+DI+  T A+ F  P+++V+ + R+  K +   + Y
Sbjct: 659 SQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVY 718

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                                              A   K+   
Sbjct: 719 -----GISDFGL---------------------------------------ARDLKVSRR 734

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     + A+  GV      + +           ++                      
Sbjct: 735 EAKSYIDNYFARCPGVKDYIDRVIKEAKHTGYVTTLLN---------------------- 772

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               RR    D+         A S   R            +Q  + DI+   M    +  
Sbjct: 773 ----RRRYLPDLFSPN---YNARSFGERAAM------NTPIQGSAADIIKLAMVRVAREL 819

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                   +VL VHDE++ + P++    +  L    M         +PL  +      +
Sbjct: 820 RERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENALP--LDVPLVVDVKLGPNW 876


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 109/684 (15%), Positives = 197/684 (28%), Gaps = 131/684 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
           +  D ET    PL           A +   A++WD              E   +  +L  
Sbjct: 386 VCFDTETTGLNPLT----------AELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRP 435

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +  +E +  V  N  ++  +  K   I++       T +           ++       L
Sbjct: 436 FFENEDIQKVGQNLKYDIKVLHKY-DIEVRG-PLFDTMLAHYLINPDMRHNMDVLAETYL 493

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+S    +   GK    +  K   D P  D T      A          + E      ++
Sbjct: 494 NYSPVSIETLIGKK--GKNQKSMRDVPLEDQTEYAVEDADITLQLKEHFEKELGDANTQK 551

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    D E  L  +   +   G  +D   +  L E +  +   L+  I K       +  
Sbjct: 552 LFD--DIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAGEEF-NIG 608

Query: 237 QTYALRMYLFLITGI-DLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L   LF    + +    +      T + +LS+          +L+    +      
Sbjct: 609 SPKQLGEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTIIQNVLDYRGLAKLKSTY 668

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L E V  DGR+        A  TGR S      QN+P                    
Sbjct: 669 VDALPEQVEEDGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------------- 707

Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       VR   +       L+ AD + IE R++A ++ ED  I+AF NGEDI+ 
Sbjct: 708 ----IRTERGRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNGEDIHA 763

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           +T AK FN PI++V++EQR+  K +   + Y                DL +        +
Sbjct: 764 STAAKVFNVPINEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTDLTRSESKDLIDT 818

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            ++ + +  ++   + D   E      ++G          R   + +      +      
Sbjct: 819 YYKTYPKLRNYMSNLVDDAREDGYVSTVLGR---------RRYLKDINSSNGVVRGAAER 869

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                    +                          ++   ++    +  N  T      
Sbjct: 870 NAVNAPIQGSAADII---------------------KVAMINIHKKLAEGNFKTK----- 903

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                                  +                 +V + P      + TL   
Sbjct: 904 ----------------------MLLQVHDE-----------LVFDVPKNELEDIKTLVKT 930

Query: 651 -MTKNPSWAKGLPLKAEGYEAKRY 673
            M     +   +PL  E      +
Sbjct: 931 EMESA--YTLSVPLDVEVGVGNDW 952


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 105/718 (14%), Positives = 191/718 (26%), Gaps = 168/718 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52
           ++  D ET     L           A +   + A                          
Sbjct: 395 RVAFDTETTDLSAL----------DAELVGISLAVAPGEACYIPLGHTGPSGDLFGGDDN 444

Query: 53  MPSDLL---------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            P  L            L D +V+ +  N  ++ ++ K+  GI+I    +  T +L+   
Sbjct: 445 RPQQLAANEALALIGPLLEDPSVLKIGQNIKYDALVMKR-RGIEI--VSFDDTMLLSYAL 501

Query: 104 GLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                   +                  G   +                +           
Sbjct: 502 DGGRGQHGMDALAERH----------LGHMCMTFAQAMGHAPGAKKSDKTFAAMPLDKAT 551

Query: 161 EYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQ 210
           EY   D + T  L+  L P    ER           L  +   +   G ++D D++ +L 
Sbjct: 552 EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLS 611

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266
              AQ   +L+E+I     G   +      L   LF    +     ++     T  ++L 
Sbjct: 612 HAFAQRTVRLEEEI-NGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLD 670

Query: 267 HSNITQLA-------KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTG 318
                +          + +L     +       + L   ++   GR+  +    GA+ TG
Sbjct: 671 DLAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIHTSYA-LGATTTG 729

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R +      QN+P                                +R+  IA  G +L+ 
Sbjct: 730 RLASSDPNLQNIP------------------------IRTKEGREIRTAFIADKGMQLIS 765

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA +A      KAFA G DI+  T ++ F  P+  +  E R   K +   
Sbjct: 766 ADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFG 825

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +   +    + F+ +     +    + Q       + +
Sbjct: 826 IIYG-----ISAFGLANQLSISREEASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETI 880

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G             +  +      +             I       + R ++R     V
Sbjct: 881 FGRRIH---------YPEINTKNPSMRGFLERAAIN-APIQGSAADIIRRAMIRMPAALV 930

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
              L S+R L                                                  
Sbjct: 931 DAKLSSARML----------------------------------------------LQVH 944

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGL--PLKAEGYEAKRY 673
                        +V E  D    ++  T   +M      A  L  P+  +   A  +
Sbjct: 945 DE-----------LVFEVADNEASALITTARRVMETAAEPALKLAVPIHVDAKAANNW 991


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 93/702 (13%), Positives = 179/702 (25%), Gaps = 159/702 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52
           +   D ET S  PL          QA +   + A +                      + 
Sbjct: 349 QFAFDTETDSLDPL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQ 398

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109
             + L   L D  +  +  +  ++  + ++  G+++       T + +           +
Sbjct: 399 ALAQLAPLLTDPALRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 456

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L +     +   GK                         + +    Y   D +
Sbjct: 457 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IKFAQVSLEDATRYAAEDAD 501

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L + L P             D E  L  +   I   G  +D   + +    +++  
Sbjct: 502 ITLRLHQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRM 561

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
               +   +L  G   +      L+  LF    +            T +  L        
Sbjct: 562 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 620

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL     +       + L E +    GR+  +    GA  TGR S      QN+P 
Sbjct: 621 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 678

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G+KL+  D + IE R++A +
Sbjct: 679 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 715

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++  T A+ F   ID VS ++R   K +   L Y           
Sbjct: 716 SGDPGLVSAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMS-----AFG 770

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          F  +          + Q  +    + + G    L       
Sbjct: 771 LARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDF----- 825

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    +    G                     +       D  I   + R L+   
Sbjct: 826 ----INAGSQGQRAGAERAAINAPMQGTAADI----IKRAMVSVDGWIAEHAQRALMILQ 877

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           V  +  +                            DI                       
Sbjct: 878 VHDELVFE--------------------------ADI----------------------- 888

Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                     + +  + + M         +PL  +      +
Sbjct: 889 ------DFVDTLLSEVTARMATAAQ--LRVPLVVDSGVGDNW 922


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 193/706 (27%), Gaps = 158/706 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D ET     +           A +   +               +            
Sbjct: 345 YVAVDTETTGLDEMV----------AELVGISLCVQPGKACYIPLIHKTHTGDDLFGSED 394

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                         L   L D ++M +  N  ++  +F + LGI +       T +L+  
Sbjct: 395 LAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ-LGITVAP--IDDTMLLSYV 451

Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155
                    +       L  +    K  +  GK+ +         + PY    A+  ++ 
Sbjct: 452 MHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQAVPYAAEDADITLRL 511

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           WQLF     R      ++++ L      ER L  +   +   G ++D D + ++    AQ
Sbjct: 512 WQLFKPQLHRIQVT--KVYETL------ERPLVPVLAAMERSGIKVDRDTLSRMSNAFAQ 563

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271
           +   L+++I +L      +      L   LF   G++     +     T   +L      
Sbjct: 564 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDLATE 622

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 IL+    S       + L + ++ D GR+  +    GAS TGR +      QN+
Sbjct: 623 HDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 681

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R   +A  GK LV  D + IE R+LA
Sbjct: 682 P------------------------IRSEEGRRIREAFVAEEGKVLVALDYSQIELRILA 717

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA      +AF +G DI+  T ++ F  P+D+++ + R   K +   + Y         
Sbjct: 718 HIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIYG-----ISG 772

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L + +          FE +    ++    +    E      L G          
Sbjct: 773 FGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDNTKAFAKEHGFVQTLFGRKINT----- 827

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                 +              +                                      
Sbjct: 828 ----PEIGAKGPRAGFAQRAAINAPIQ--------------------------------- 850

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                      TA   + R         +        DI    +                
Sbjct: 851 ----------GTAADVIRRAMIRMPAAIK--------DIPATMLLQVHDE---------- 882

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            ++ E       ++      +M     P     + L  +  +   +
Sbjct: 883 -LLFEVEKGAEDALIKAARDVMENASEPVVKLDVKLIVDAGKGANW 927


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 198/506 (39%), Positives = 278/506 (54%), Gaps = 19/506 (3%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
            ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+D
Sbjct: 62  QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359
           GRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414
            S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y   YA
Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++          
Sbjct: 242 RAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGV 301

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
             +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q 
Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC---SYLNT--ATSQLMR 589
            G           +L +RR K  + I LPS R L Y   + +    +Y+ T   + +  R
Sbjct: 361 PGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWER 415

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            +TYGGK+ ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  
Sbjct: 416 LKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSK 475

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L++ N  WA  LPL A G+E  RYRK
Sbjct: 476 LLSFNSDWAWDLPLSANGFETYRYRK 501


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 116/698 (16%), Positives = 197/698 (28%), Gaps = 153/698 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56
              D E  S QP+             +   + A   + V       Q         + + 
Sbjct: 361 FAFDTECTSLQPVAS----------DLVGISIAIAPDTVCYIPVGHQSETQVPCGEVVTA 410

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115
           L  +  +      AHN+ F+  +     GI +    +  T + A   G    LK+     
Sbjct: 411 LAPFFANPQQPKFAHNAKFDMEVLAGA-GIKVSGLAF-DTMIAAAMLGKRQGLKDLAFYE 468

Query: 116 --LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L       +   G+    I+        + PY    A +        E  +R +EA  
Sbjct: 469 LKLPEPPTTIEDLIGRGNKQISFAEVPVEQAAPYAAADALYTL---RLTERLQRQLEAEP 525

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L      +   E  L  +   +   G R+D + + +L    AQ    L E I +   G 
Sbjct: 526 ALHDLYYRV---ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP 582

Query: 232 IRSSRQTYALRMYLFLITGI--------DLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +      L   LF   GI         L          +L   +        IL    
Sbjct: 583 F-NINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADILTYRQ 641

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +      ++ L + V+   GR+  +    GA  TGR S      QN+P           
Sbjct: 642 LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGA-ATGRLSSNNPNLQNIP----------- 689

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A  G + V AD + IE RVLA ++G++  I AF
Sbjct: 690 -------------VRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAF 736

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             G DI+  T ++ F      V K QR + K +                    G+     
Sbjct: 737 QQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVF--------------GVIYGIS---- 778

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +       +     A+  G+ +   
Sbjct: 779 --------------------------AFGLAQRLGIERDLARQLIDNLFAQFPGIRRYID 812

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
              E                                 +     RR V  D++   +    
Sbjct: 813 QTLEFGRQHGY--------------------------VQTLFGRRRVMEDLRASGARRAA 846

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
           A  +               +Q  + D++   M N  +          ++L VHDE+++E 
Sbjct: 847 AERE----------AINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEA 896

Query: 637 PDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           P+        L   +M+        +PL         +
Sbjct: 897 PEDEVEPAARLLRDVMSSVYR-DLVVPLSVNLEVGPNW 933


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 95/692 (13%), Positives = 183/692 (26%), Gaps = 135/692 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------M 53
            +L  D ET S  P            A +   +++WD                      +
Sbjct: 297 KRLSFDTETTSTNP----------RWADLVGISFSWDQGEGVYIPIRSPEGDVKLDESLV 346

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L +  +  V  N  ++ ++  + +G+++    +  T V             L 
Sbjct: 347 LEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGASF-DTMVAHYLLEAGARSHGLD 404

Query: 111 NAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                 L             GK  I            Y    A+               +
Sbjct: 405 ELSLRYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPL---RLDPILSERI 461

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           EA   L   L   +D E  L  +   +   G R+D++ + +L     +  + L+ +I +L
Sbjct: 462 EAE-GLGDLL---TDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLEREIYQL 517

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L   LF    + ++  ++    T   +L            I+     
Sbjct: 518 AGRDF-NINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAKIVQFRQY 576

Query: 285 SGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +      ++ L   +     R+  +     A  TGR S      QN+P            
Sbjct: 577 AKLKGTYVDALPVLICSKTDRVHTSFNQVVA-ATGRLSSNDPNLQNIP------------ 623

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                            S  +RS  I      KL+ AD + IE RVLA  +G+   ++++
Sbjct: 624 ------------IRTQESREIRSAFIPGTPDWKLLCADYSQIELRVLAHFSGDPALMESY 671

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              EDI+    ++ +  P+D+V+   R   K +   + Y               LD+ + 
Sbjct: 672 QKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSP-----FGLAKSLDIDKD 726

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                  + F+ +   +     +            ++G          R           
Sbjct: 727 EAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGRRRA--IDGVRTA--------- 775

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D  +     +      +   V       +               +L    V        +
Sbjct: 776 DKRDRLKRQLTMPERTAINTVIQGSAADII--------------KLAMLRVHRRLEKEGS 821

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                          +                 +V ETP     
Sbjct: 822 PAKL---------------------------LLQIHDE-----------LVFETPPEYLE 843

Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  L    M    + A  +PL  +      +
Sbjct: 844 QLAQLVREEMESARNLA--IPLVVDIKSGDNW 873


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 105/712 (14%), Positives = 192/712 (26%), Gaps = 168/712 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
            +  D ET +               A +   + A                          
Sbjct: 356 IVAFDTETDALSSAT----------AGLCGVSLAVAPGEACYIPLGHCEAEGLQLEAAAD 405

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                     + L   L D +V+ VA N+ ++  +  +     I       T +++    
Sbjct: 406 LTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY---GIEVGPIDDTMLISYVLE 462

Query: 105 LP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L+      K   G     +  K                       
Sbjct: 463 AGLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQKSFKYVG---------------LSEAT 507

Query: 161 EYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P    E          R +  +   +   G ++D + + +L 
Sbjct: 508 CYAAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLS 567

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266
               Q   +L+ +  +L      +      +   LF   G+    ++      T  S+L 
Sbjct: 568 NEFGQRMAELEAEAHRLAGRPF-NLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLE 626

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                      ++L+    S       + L  A+S   GR+  +     ++ TGR S   
Sbjct: 627 DLAAQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLA-STTTGRLSSSD 685

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
               N+P                                +R   +A  GK L+ AD + I
Sbjct: 686 PNLMNIP------------------------IRTEEGRKIRRAFVAEPGKVLISADYSQI 721

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA I       +AF  G DI+  T ++ F  P++ +  E R   K +   + Y   
Sbjct: 722 ELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYG-- 779

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + Q        + FE +    ++    +           + G    
Sbjct: 780 ---ISAFGLANQLGIPQDEAGAYIKTYFERFPGIRAYMDRTKQAARSQGFVHTIFGRKVN 836

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
           +           V                +  +I+A    +   +               
Sbjct: 837 I---------PAVKS-----KSQAERAFGDRAAINAPIQGSAADV--------------- 867

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
             R     + G                              +R      M          
Sbjct: 868 -MRRAMIRMPGALKAEGL----------------------TAR------ML--------- 889

Query: 625 VLTVHDEIVSETPDTPYFSVGTL-CSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            L VHDE+V E P+    +V  +  ++M K   P+ A  +PL  E   A  +
Sbjct: 890 -LQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPAVAISVPLVVEARAAPNW 940


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 198/701 (28%), Gaps = 164/701 (23%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59
            L  D ET +  P+          +A +   ++A+               E  A+      
Sbjct: 453  LCFDSETTAIDPV----------EADLVGLSFAYRAGEAFYVPVPADRAEAQAIVDQFKP 502

Query: 60   YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116
               + T+  V  N  ++ ++ KK  G+++  K    T +           ++       L
Sbjct: 503  VFENPTIEKVGQNLKYDLLMLKKY-GVEVQGK-LFDTMIAHYLIEPEMRHNMDMMAMTYL 560

Query: 117  NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            N+S    +   GK    +                      Q   +Y   D + T +L   
Sbjct: 561  NYSPVEIEALIGKKGKGQL--------------TMRDVDIQKVVDYAGEDADITLQLKHA 606

Query: 177  LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
              P  +           E  L  +   +   G +ID + + +L   +  + +++ ++I +
Sbjct: 607  FAPRLEKDNLHKLFDQVEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFE 666

Query: 227  LTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNR 281
            +  G   +      L   LF    +             T + ILS           IL+ 
Sbjct: 667  IA-GESFNIGSPKQLGEVLFDKLKLDKNAKKTKTGQYATGEEILSKLEAEHEIARKILDY 725

Query: 282  LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      ++ L   +S   GR+  +     A  TGR S      QN+P         
Sbjct: 726  RELIKLKNTYVDALPLLISKRTGRIHTSFNQAVA-ATGRLSSTNPNLQNIP--------- 775

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +       ++ AD + IE R++A  +G+   +
Sbjct: 776  ---------------IRTPRGQEIRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQTML 820

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            +AF NG DI+  T +K F+  +D+V+ + R   K +                    G+  
Sbjct: 821  EAFNNGVDIHTQTASKVFHVGLDEVTSDMRRKAKTINF--------------GIIYGISS 866

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               +Q +K                              +       + + + A    V  
Sbjct: 867  FGLAQRLK------------------------------IPRKEAGQIIEEYFAGFPAVKD 896

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                  E                                +      RR    D+      
Sbjct: 897  YIDQCIEKAR--------------------------GFGYAETILGRRRYLRDINSRNQ- 929

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIV 633
              T      R            +Q  + D+L   M          +    ++LTVHDE+V
Sbjct: 930  --TDRMFAERNA------VNAPIQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELV 981

Query: 634  SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +        +   +  +M        G+ ++      + +
Sbjct: 982  FDAHRDEIDLLRVRVDEIMKNAIP--MGVKMETGIGTGENW 1020


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 98/696 (14%), Positives = 193/696 (27%), Gaps = 144/696 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
                D+ET S   +           A I    +  D                       
Sbjct: 332 KTFVFDLETTSLDYM----------NATIVGWVFLVDKNS-FYVPVGHDYLNAPKQLDFK 380

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            +   L   L D ++  V  N  ++  +      ID+       T V +          +
Sbjct: 381 DVLDQLKLILEDVSIGKVGQNLKYDAHILANYQ-IDLQGIS-DDTMVKSYCLNSVATRHN 438

Query: 109 LKNACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           + +     LN          GK    I         + PY C             +    
Sbjct: 439 IDDLSEYYLNHKTIHFDDIAGKGKKQITFNQVDLETAFPYACEYVIVTDLLNHVLDEEIV 498

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                 +L++ L      E  L  +   +   G  +D++ +   Q  I Q+ K +   + 
Sbjct: 499 QYPKLVKLYQNL------ELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKDIQAQVF 552

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLIL 279
           +L  G I +      ++  LF   G+           +  T +  L   +      DLIL
Sbjct: 553 ELA-GDIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLLDHP--LVDLIL 609

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           +    +      L  L + +  +     T      + TGR S      QN+P        
Sbjct: 610 SYRTLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIP-------- 661

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A     ++ AD + IE R++A ++ +   +
Sbjct: 662 ----------------IRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLL 705

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF + +D++  T +  FN PI++V+K+ R   K +   L Y               +D+
Sbjct: 706 DAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMS-----AFGLTKQIDV 760

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                     + F+++     +   +++    +   + ++G    L           +  
Sbjct: 761 SIIEAKQYIDTYFDNYPGVLHYMDSIKESAKVWGYVETVMGRRLYL---------PQINS 811

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             K L +                                              +      
Sbjct: 812 KNKILQQHALRTA----------------------------------------INAPMQG 831

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
            +    +      +      N       DI              +++ VHDE+V E  ++
Sbjct: 832 SSADIIKKSMLDIHAWIGENNP------DI-------------RMIMQVHDELVFEVSES 872

Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                   +  LM     +   +PLK        ++
Sbjct: 873 KADEFAHKIQGLMANV--YLLDIPLKVNVGIGTSWQ 906


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59
           +  +D ET S  P+          QAV+   ++A +                P  L +  
Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQ 393

Query: 60  -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109
                   L D  V  V  +  ++  + ++  GI +       T + +           +
Sbjct: 394 ALALLQPLLEDPAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L +         GK                + T            +Y   D +
Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDAD 496

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             + E  L  + + I   G +ID + + K    +++  
Sbjct: 497 ITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             + +       G   +      L++ LF    +            T +  L        
Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL   + +         L E +    GR+       GA  TGR S      QN+P 
Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A +G+KL+  D + IE R++A +
Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++    A+ F   ID+V+  +R   K +                 
Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------G 756

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV    ++  +                                       RRL  + 
Sbjct: 787 RFAGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624
           +        T  +   R            +Q  + DI+   M            +    +
Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871

Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E  +    + V  + + M         +PL  +      +
Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 97/722 (13%), Positives = 178/722 (24%), Gaps = 186/722 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------------- 49
            D ET +            A  A +   + A           T                 
Sbjct: 401 FDTETDALS----------ATHAGLCGVSLAIGPNDACYVPLTHEHPPVEGAGGLDFGGD 450

Query: 50  -----------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
                      +  + + L   L D  V+ V  N  ++  +  +     I       T +
Sbjct: 451 TDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMARR---GIRVAPIDDTML 507

Query: 99  LARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           ++           +       L       K   G                    ++    
Sbjct: 508 ISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTG---------------KAQKSFKHV 552

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLD 204
             +    Y   D + T  L++ L P    ER           +  +   +  RG R+D  
Sbjct: 553 ELKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPA 612

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----T 260
            + +L         +L+    ++      +      +   LF    +     +      T
Sbjct: 613 RLRRLSSEFGLRMAELEAQAHEIAGRPF-NVGSPRQIGEILFGELNLPGGKKTASGQWET 671

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             + L     T     ++L+    S       + L  A+        T     A+ TGR 
Sbjct: 672 GAATLEGLAETHALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRL 731

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           +      QN+P                                +R   IA +G  L+ AD
Sbjct: 732 ASSDPNLQNIP------------------------IRTETGRQIRQAFIAKDGHVLISAD 767

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA I       +AF  G DI+  T ++ F  P+  +  E R   K +     
Sbjct: 768 YSQIELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAIN---- 823

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+                                   A +  +  
Sbjct: 824 ----------FGIVYGIS------------------------------AFGLANQLGIDQ 843

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                  K +  +  G+             +                            +
Sbjct: 844 GEAGAYIKTYFERFPGIRTYMDATRAEVRSLG--------------------------FV 877

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616
                R++    +               R            +Q  + DI+   M      
Sbjct: 878 STVFGRKIHIPAIASKSGAERQFG---ERAAINAP------IQGAAADIIRRAMIRMPGA 928

Query: 617 ATKNGY--DIVLTVHDEIVS-ETPDTPYFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAK 671
               G    ++L VHDE+V          ++  +  +M     P+ A  +PL  +   AK
Sbjct: 929 LEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEPAVALSVPLVVDARAAK 988

Query: 672 RY 673
            +
Sbjct: 989 NW 990


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 190/703 (27%), Gaps = 162/703 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPS----- 55
           + +D ET S  PL           A +   + AW    D          + A P      
Sbjct: 321 VALDTETTSLDPL----------HADLVGISCAWQAGGDYQAVYVPVGHRDAGPQLDRQT 370

Query: 56  ---DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---L 109
               L  +L D     +A N+ ++  +F +  GI         T + +       +   L
Sbjct: 371 VLTALRPWLEDPQAAKLAQNAKYDWRVFWRH-GIHPAGLA-RDTLLESYVLNSSHNGHDL 428

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L       +   GK                   R            Y   D +
Sbjct: 429 DTLAERYLQHQNIRYEEVVGKG---------------KSARNFADVPVAEALPYAAEDAD 473

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
               +   L P             + E  L L+   + + G +ID   +  L   ++++ 
Sbjct: 474 VCLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDM 533

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273
              ++    +  G   +      ++  LF    + ++  +      T + +L+   +   
Sbjct: 534 ADCEQKAF-VLAGQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVLAQLAVHAD 592

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL+    +       + L + ++ D GR+    Q   A  TGR S      QN+P 
Sbjct: 593 LPRLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVA-ATGRLSSNDPNLQNIP- 650

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A  G  L+ AD + IE R+LA +
Sbjct: 651 -----------------------VRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHL 687

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   ++AFA GEDI+  T A+ F+   + V    R   K +   L Y           
Sbjct: 688 SGDARLLQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTP-----YG 742

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + Q +        FE +     +    +    +    + L G    +       
Sbjct: 743 LAQQLGIDQAAARQYMDRYFERYLGVLEYMAQTRALAKKQGYVETLFGRRLYV------- 795

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +                          A++ ++ M      +       R      
Sbjct: 796 --PEIRSSNPARRTYAERAAINAPMQGTA--ADLIKMAMIAVDAWLQERPERGR------ 845

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATKNGYDIVLTVHDE 631
                                                    M          ++L     
Sbjct: 846 -----------------------------------------MILQVHDE---LIL----- 856

Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              E P+    +    L + M      A  +PL       K +
Sbjct: 857 ---EVPEAGLEAAKSALKARMEGVAELA--VPLLVGLGIGKHW 894


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 125/405 (30%), Positives = 204/405 (50%), Gaps = 19/405 (4%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
             L IDIET S   L K GV+AYA+     I L AY++DDE  K+ D  +   +  ++  
Sbjct: 7   KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            L D  ++  A N+ FER    K +G+ +  + W+CT+V +    LP SL+     L  S
Sbjct: 67  ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126

Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175
           E   K  EGK LI  F   CK +  +         H  + W+ F  YC RDV+  + + +
Sbjct: 127 EQKLK--EGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQ 184

Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +L   P+ + E   + LDQ INDRG  +D +LV +        +  +     ++T     
Sbjct: 185 KLHKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTGLE-- 242

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L+ +L    G+++  +S+G +  ++  ++      + +  RL  + +++ K  
Sbjct: 243 NPNSVSQLKGWLSER-GVEIDSLSKGAVAELIEDADG--EVLEALKLRLLMAKTSVKKYE 299

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET- 352
            +  +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+   S+  L +++    + E  
Sbjct: 300 AIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEEL 359

Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                    + S+ +R+  I   G + +VAD + IEARVLAW++G
Sbjct: 360 ELFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 108/714 (15%), Positives = 184/714 (25%), Gaps = 172/714 (24%)

Query: 8    IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------------- 51
            +E ++   +    V     QA +T  A A             +                 
Sbjct: 428  LEAKATFDIKSAVVDP--MQAELTGLALALGPNEACYVPLGHRQSGDAAGLFASGLEPDQ 485

Query: 52   ----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106
                     L   L    V+ +  N  F   +     GI + +       +++       
Sbjct: 486  IAARDALEALRPILESPGVLKIGFNIKF-TAVLLAQHGITLQNA--DDVQLMSYALDAGR 542

Query: 107  --SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
                L       L           G                     +    A      Y 
Sbjct: 543  HAHGLDALAETWLGHKTLSYGEVIGSG---------------KAKLSFDQVAIDRATCYA 587

Query: 164  KRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELI 213
              D +    L++ L P    ER           L  +   +  RG  ID  ++ +L    
Sbjct: 588  AEDADVALRLWRVLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDF 647

Query: 214  AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN 269
            AQ   +++ +I ++    I +      L   LF    +     ++     T   +L    
Sbjct: 648  AQTAARIEAEIREIAGEEI-NIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELA 706

Query: 270  IT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                     IL+    S       + L   V        T     A+ TGR S      Q
Sbjct: 707  EQGHEFPRKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQ 766

Query: 329  NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
            N+P                                +R   IA+ G KLV AD + IE R+
Sbjct: 767  NIP------------------------VRTEDGRKIRRAFIAAPGHKLVSADYSQIELRL 802

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            LA IA      +AF +G DI+  T ++ F  PI  +  E R   K +             
Sbjct: 803  LAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINF----------- 851

Query: 449  KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                   G+                                   A +  +         K
Sbjct: 852  ---GIIYGIS------------------------------AFGLANQLGIPREEAGAYIK 878

Query: 509  AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             +  +  G+        +                                 +     R+ 
Sbjct: 879  KYFERFPGIRAYMDATRDFCRAHG--------------------------FVETLFGRKC 912

Query: 569  VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGY 622
             Y D+K   + +        R             Q  + DI+   M          K   
Sbjct: 913  HYPDIKASNASVRAF---NERAAINARL------QGTAADIIRRAMVRMEDALAEKKLSA 963

Query: 623  DIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             ++L VHDE++ E  D     ++  +  +M     P+    +PL+ +   A  +
Sbjct: 964  QMLLQVHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNW 1017


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 105/691 (15%), Positives = 196/691 (28%), Gaps = 136/691 (19%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMP 54
           M +  +  D ET    PL          QA +   A++W+              E   + 
Sbjct: 372 MKQTSVCFDTETTDLDPL----------QAELVGIAFSWEKTKGFYVPFPSEKEEVQKLI 421

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +   E +  +  N  ++  +  K   +++  K    T +           ++   
Sbjct: 422 EALRPFFEAEEIEKIGQNLKYDIKVLAKY-DVEVKGK-LFDTMIAHYLINPDMRHNMDVL 479

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN++    +   GK    +  K   D P    T      A            E   
Sbjct: 480 AETYLNYTPVSIEELIGKK--GKNQKSMADVPVDQQTEYAVEDADVTLQLKEHFQKELGE 537

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              ++L    + E  L  +   +   G  +D + +  L E +  +   L++ I +     
Sbjct: 538 ANTQKLFD--EIEIPLVQVLADMELEGINLDQEFLGSLSEALNNDIASLEKSIYEEAGEE 595

Query: 232 IRSSRQTYALRMYLFLITGI--DLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF    +             T + +LS+          +L+    S 
Sbjct: 596 F-NIGSPKQLGEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAPDHEIVQHVLDYRGLSK 654

Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   V+   GR+        A  TGR S      QN+P              
Sbjct: 655 LKSTYVDALPAQVNAKTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------- 699

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   +       L+ AD + IE R++A ++ E+  +KAF  
Sbjct: 700 ----------IRTERGRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETMMKAFQE 749

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GEDI+ +T AK FN PID+V++EQR+  K +   + Y                DL +   
Sbjct: 750 GEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTDLTRSES 804

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + ++ + +  ++     D   E      ++G          R   + +      +
Sbjct: 805 KELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGR---------RRYLKDINSSNAVV 855

Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                   V      SA  +  +  + +                      KG  + +   
Sbjct: 856 RGAAERNAVNAPIQGSAADIIKIAMIKIHHKL----------------KDKGLRTKM--- 896

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                                         +                 +V +   +    
Sbjct: 897 ------------------------------LLQVHDE-----------LVFDVYKSELEE 915

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V   + S M         +PL  E      +
Sbjct: 916 VQELIKSEMEHAFK--LDVPLDVEVGLGDNW 944


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59
           +  +D ET S  P+          QAV+   ++A +                P  L +  
Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQ 393

Query: 60  -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109
                   L D  V  V  +  ++  + ++  GI +       T + +           +
Sbjct: 394 ALALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L +         GK                + T            +Y   D +
Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDAD 496

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             + E  L  + + I   G +ID + + K    +++  
Sbjct: 497 ITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             + +       G   +      L++ LF    +            T +  L        
Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL   + +         L E +    GR+       GA  TGR S      QN+P 
Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A +G+KL+  D + IE R++A +
Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++    A+ F   ID+V+  +R   K +                 
Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------G 756

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV    ++  +                                       RRL  + 
Sbjct: 787 RFSGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624
           +        T  +   R            +Q  + DI+   M            +    +
Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871

Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E  +    + V  + + M         +PL  +      +
Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/686 (13%), Positives = 195/686 (28%), Gaps = 132/686 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----EQSAMPSDLL 58
           K+ +D ET S              +A +   + + +    +         ++      L 
Sbjct: 373 KIAVDTETTSLDTF----------EAELAGISISAEPAKARFISFAGTGLDRGRSIEILR 422

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L +  +     N  ++ ++ K   G+++    +  T + +         +L +     
Sbjct: 423 PLLENPAIPKTGQNLKYDILVLKNY-GLELGPVGF-DTMLASYVLDPDGKHNLDDMAALH 480

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L           G             +   D    +   A QL G +  R++EA   L +
Sbjct: 481 LRLKTTKYDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLEGAF-TRNLEAEPRLME 539

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
               +   E  L  +   +  +G  ID   + +    +  + + L E I         + 
Sbjct: 540 LCQTI---EFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHAAAGTDF-NI 595

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF + G+     ++    T   +L            +L   +        +
Sbjct: 596 DSPKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYRSLQKLKTTYI 655

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L + V+   GR+  +   +  + TGR S      QN+P                    
Sbjct: 656 DALPKMVNPRTGRVHTSFNQHV-TATGRLSSSNPNLQNIP-------------------- 694

Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   I  +    L+ AD + IE R+ A I+G+   I+AF NG DI+ 
Sbjct: 695 ----IRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGLDIHA 750

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T    F+T  + ++ + R   K +   + Y       +       L++ +        +
Sbjct: 751 ETARVIFDT--EDITADMRRKAKEVNFGVLYG-----IQPFGLSKRLNIPRNEAREIIDT 803

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
             E +    S    + ++  +      L+G    L     R  +         + +    
Sbjct: 804 YREKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSN---------VQKAAER 854

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                                            +N  + ++   
Sbjct: 855 AAMNTPIQGTAADIIKC-------------------------------AMNLCSRRID-- 881

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                          +  +    +               DE+V ET +     + +L   
Sbjct: 882 ---------------AASMQSVMLLQVH-----------DELVFETTEDEKEGLKSLVEE 915

Query: 651 -MTKNPSWA--KGLPLKAEGYEAKRY 673
            M +  +    K +P+  +    K +
Sbjct: 916 AMIEAAALCGLKNVPVAVDTGIGKNW 941


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 98/709 (13%), Positives = 188/709 (26%), Gaps = 167/709 (23%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSAM 53
                D ET S              +A +   ++A                       + +
Sbjct: 455  HFAFDTETTSED----------QRKADLVGLSFAMAPGEAYYIPVGHTTTVDGQEPGTQL 504

Query: 54   PS-----DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
            P       L     D ++    HN+ ++  +  +  GI +    +  + + A        
Sbjct: 505  PLSHVLVQLKPIFEDASIGKYMHNAKYDIAVMLRY-GIQVEGLSF-DSMLAAYLIEPGR- 561

Query: 109  LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDV 167
                   L   E           ++       +         +      +   +Y   D 
Sbjct: 562  -----RGLGLKEQAF------QRLSILMTPITELIGSGSKIISMAQVPIRRAADYAGSDA 610

Query: 168  EATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            + T  L   L                E  L  +   +   G  +D + + +  E + ++ 
Sbjct: 611  DMTLRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQL 670

Query: 218  KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
            +K ++ I     G   +      L   LF+   +     ++        ++ +      A
Sbjct: 671  RKAEQTIYDAV-GHHFNVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPA 729

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             D +L     S      ++ L   +    GR+  +     AS  GR S      QN+P  
Sbjct: 730  IDSLLEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIASS-GRLSSSNPNLQNIP-- 786

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                          +R   IA     L+ AD + IE R+LA I 
Sbjct: 787  ----------------------VRTELGRQIRRAFIADPSYVLLTADYSQIELRILANIT 824

Query: 394  GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
             E   ++AF  GEDI+  T A  F+ P+++V+++QR + K +  A+              
Sbjct: 825  NEPRLVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVL------------- 871

Query: 454  HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                                   +    +         K +   
Sbjct: 872  -------------------------------YGQSAYGLSQVTGMRPGDAADFIKRYHET 900

Query: 514  HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
               +    +   E                                       R+    D+
Sbjct: 901  FPNIKVYVESTLEQARRQGYVNTCF--------------------------GRKRFIPDM 934

Query: 574  KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
            +        A   L RE           +Q  + D++   M               ++L 
Sbjct: 935  RVLSHVERQA---LEREA------VNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQ 985

Query: 628  VHDEIVSETPDTPYFSVGTLCS-LMT--KNPSWAKGLPLKAEGYEAKRY 673
            VHDE+V E P         +   +M         + +P+K +    K +
Sbjct: 986  VHDELVFEVPVEELERAKRIVKAVMEGIGALLVPQKVPIKVDMKSGKNW 1034


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 94/700 (13%), Positives = 185/700 (26%), Gaps = 168/700 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---SDLLQYL 61
             D+ET     +           A +   ++ W++          ++        +   L
Sbjct: 382 AFDLETTGLDEML----------AQVIGFSFCWEEGKSYYVPLVHETKELVDREQVRSLL 431

Query: 62  R----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACL- 114
                   +  V  N  ++  +  +  GI +P   +  T V A      S  ++      
Sbjct: 432 EEYLGSGRLSLVGQNIKYDYKVL-RQWGI-MPKNIYFDTMVAAWLLDSTSVFNMDYLAEK 489

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L++          K  +                        +    Y   D + T  L+
Sbjct: 490 YLDYKTVHYTDIVPKDKL------------------LSDIPLEQAVFYGAEDADVTFRLY 531

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           K    L           + E  L ++   +   G  ++  L+  L          +   I
Sbjct: 532 KLFSELLGARNLRSLLDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFEGRIDAIRNQI 591

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNR 281
             +      +      L+  LF+   I     +     T   +L          +LIL  
Sbjct: 592 FAICGHAF-NLNSPQQLQEVLFVERNIPTGAKTRSGFSTSTDVLEPLRDDYPEVELILQY 650

Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +      ++ L   ++    R+  +    G + TGR S      QN+P         
Sbjct: 651 RTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTG-TETGRLSCKDPNLQNIP--------- 700

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +RS  +   G   + AD + IE  VLA +A +     
Sbjct: 701 ---------------VRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKG 745

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AFA G D++ +T +  F+ P+D+V+  QR I K +                    G+   
Sbjct: 746 AFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINF--------------GVMYGMG-- 789

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           A+  K+  +  +     +  ++  V   
Sbjct: 790 ----------------------------THSLAMDLKIPHSEAKQFIDQYFERYSSVRSF 821

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +        V      +   R                                      
Sbjct: 822 VEATKTMSQQVGSVSTLLGHVRTITEINSRSAVE-------------------------- 855

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634
               ++  R           ++Q  + DI+   M          K G  ++L +HDE++ 
Sbjct: 856 ---RAKAERIA------VNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIF 906

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           E P+        +    +         +PL+        +
Sbjct: 907 EVPEAEIEETKAVVKEALEHAVK--LSVPLRTSIEVGSNW 944


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59
           +  +D ET S  P+          QAV+   ++A +                P  L +  
Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQ 393

Query: 60  -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109
                   L D  V  V  +  ++  + ++  GI +       T + +           +
Sbjct: 394 ALALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L +         GK                + T            +Y   D +
Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDAD 496

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             + E  L  + + I   G +ID + + K    +++  
Sbjct: 497 ITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             + +       G   +      L++ LF    +            T +  L        
Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL   + +         L E +    GR+       GA  TGR S      QN+P 
Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A +G+KL+  D + IE R++A +
Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++    A+ F   ID+V+  +R   K +                 
Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------G 756

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV    ++  +                                       RRL  + 
Sbjct: 787 RFAGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624
           +        T  +   R            +Q  + DI+   M            +    +
Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871

Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E  +    + V  + + M         +PL  +      +
Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 103/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59
           +  +D ET S  P+          QAV+   ++A +                P  L +  
Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQLDRGQ 393

Query: 60  -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109
                   L D  V  V  +  ++  + ++  GI +       T + +           +
Sbjct: 394 ALALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451

Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L +         GK                + TR            Y   D +
Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEATR------------YAAEDAD 496

Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T  L   L P             + E  L  + + I   G +ID + + K    +++  
Sbjct: 497 ITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273
             + +       G   +      L++ LF    +            T +  L        
Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +IL   + +         L E +    GR+       GA  TGR S      QN+P 
Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A +G+KL+  D + IE R++A +
Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   + AF +G D++    A+ F   ID+V+  +R   K +                 
Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINF--------------G 756

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A +  +     +     +  
Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV    ++  +                                       RRL  + 
Sbjct: 787 RFAGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624
           +        T  +   R            +Q  + DI+   M            +    +
Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871

Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E  +    + V  + + M         +PL  +      +
Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/699 (15%), Positives = 205/699 (29%), Gaps = 164/699 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDLLQ 59
             D E  S  P+           A +   +++ + E          D T   A+   L  
Sbjct: 381 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 430

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            L       + HN  ++ +L K+  G+++       T V           +L +     L
Sbjct: 431 VLA-RDTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARSVL 487

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+         G                     +      +    Y   D + +  L   
Sbjct: 488 NYKMVPIADLIGDETDR---------------DSMREVDVETAAPYACEDADISYRLADE 532

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L    +           E  L  +  T+   G R+D D++ ++   + +    ++E++ +
Sbjct: 533 LEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFE 592

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRL 282
           L      +   T  L   LF    + +V  +      T +S+L   +       L+L+  
Sbjct: 593 LAGEEF-NINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWR 651

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++       L++L E V    GRL  +      + TGR S      QN+P          
Sbjct: 652 STYKLKSTYLDSLGELVHPETGRLHTSFNQT-RTATGRLSSSDPNLQNIP---------- 700

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +  +G  L+ AD A IE R+LA ++G+D     
Sbjct: 701 --------------IRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRAT 746

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G DI+    A+ +    + V+ EQR+  K +                    G+    
Sbjct: 747 FQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWG 792

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            +Q                                ++     + + K +R  + GV QL 
Sbjct: 793 LAQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLL 822

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +L E           +                           RR    D+    S   
Sbjct: 823 NELVEKAQDKGYAETLL--------------------------GRRRYLPDIDSSNSNAR 856

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSE 635
           +A  ++              +Q    D++   M               ++L VHDE+V E
Sbjct: 857 SAAERV---------AVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFE 907

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            P     +  T+    M         +P+  +      +
Sbjct: 908 VPPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 945


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 109/720 (15%), Positives = 191/720 (26%), Gaps = 168/720 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ--------- 50
             + ID ET S  P            A +    + + +    +       Q         
Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKI 434

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                     +   L  +           N+ ++R++  +  GI +     I T +    
Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRH-GIILNGV-VIDTLLADYI 492

Query: 103 NG--LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
               L  SL         F          K                           +  
Sbjct: 493 FDATLKHSLDEIAYREFGFKPKSFSDVVKKG------------------EDFSYVDIKSA 534

Query: 160 GEYCKRDVEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVL 207
             YC  DV  TR+L    I               + E+ L  +   I   G  ID   + 
Sbjct: 535 SMYCGMDVYLTRKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLK 594

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262
            L   + ++   +++++  +      +      L   LF    +D            T  
Sbjct: 595 DLSLELTKKLNTIEKEVYNIAGSEF-NLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDV 653

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           ++L           +I+     S      ++ L + +    GR+         + TGR S
Sbjct: 654 AVLEKLESDHPIVKMIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLS 712

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                             S  +R   +     KL+ AD 
Sbjct: 713 SSNPNLQNIP------------------------VRTEFSRRIRKAFLPQKDWKLLSADY 748

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+L  ++GE+    A+   ED++  T    F    D +  ++R IGK +   + Y
Sbjct: 749 SQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTINFGVIY 806

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             GA   +  A   G+ L         +   E +    +   + +         + L+G 
Sbjct: 807 GMGA---QRFARSTGVSL--IEAKYFLSKFKERYPAVFNFLEYQERLALSQGFVETLLGR 861

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   +   ++                                 L          I 
Sbjct: 862 RR------YFHFNKN-------------------------------GLGRLLGTPPNEID 884

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
           L ++RR                 +Q +R            +Q  S DI+   M       
Sbjct: 885 LTTARRA-------------GMEAQQLRAAANAP------IQGSSADIIKLAMIQLHSAL 925

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
                   I+L VHDE+V E           L    M         +PL  E      + 
Sbjct: 926 RETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENAVK--LSVPLIVETGVGVNWM 983


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 113/697 (16%), Positives = 198/697 (28%), Gaps = 155/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           + +D ET S   +          QA +   + A +           +            +
Sbjct: 332 VALDTETTSLDEM----------QARLVGLSMAVEPGVACYIPLAHRGPEAGTQLPKQEV 381

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
              L  +L D T   + H++ ++  +F    GI +       T + A          L +
Sbjct: 382 LERLRGWLEDATRSKLLHHAKYDTHVFAN-EGIALRGVT-EDTMLQAYVLESHRGVGLND 439

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A    G Y   D + T
Sbjct: 440 LAQRYLGRSGVNYEDLCGKGAKQIG---------------FDEVAVDRAGFYAAEDADFT 484

Query: 171 RELFKRLIP--------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +L + L P        +   E ++  +   I   G ++D + + +    + +E   L++
Sbjct: 485 LQLHQALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQ 544

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLI 278
              +L      +      L   LF   G+ +V  +      T + +LS          ++
Sbjct: 545 RAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVL 603

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     S       + L   ++   GR+        A  TGR +      QN+P      
Sbjct: 604 LEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIP------ 656

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                LA   VR   +A     LV AD + IE R++A ++ +  
Sbjct: 657 ------------------VRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDAN 698

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             +AFA GEDI+  T A+ F  P+ +V+ EQR   K +   L Y  G            L
Sbjct: 699 LQRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGV-----FGLASNL 753

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + + +        F  +     +    +    E    + + G   +L           +
Sbjct: 754 GITRDAAQAYIDRYFARYPGVARYMDDTRRLAREQGYVETVFGRRLQL---------PDI 804

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                   +G                     +V  +        L S R           
Sbjct: 805 RAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQD------WLVSQRL---------- 848

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                                       +R I+             +VL        E P
Sbjct: 849 ---------------------------SARLIM-----QVHDE---LVL--------EVP 865

Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V   +  LM++    A  +PL AE      +
Sbjct: 866 AVELDLVRETVPRLMSEVA--ALRVPLIAEVGVGHNW 900


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 113/704 (16%), Positives = 213/704 (30%), Gaps = 157/704 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
              ID ET S             ++A +   + A ++          +            
Sbjct: 342 YFAIDTETNSLNS----------QKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIK 391

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106
              +   L  YL DETV  V  N  ++  +F K  GI++    +  T +L+ +       
Sbjct: 392 IKELVKVLKPYLEDETVKKVGQNIKYDLKIFLKY-GIELK--SFEDTMLLSYSLDAGVNR 448

Query: 107 SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            +L       L+      K     GK+ +        ++  Y C  A+          Y 
Sbjct: 449 HNLDLLAKTHLDHDNIKFKDVVGTGKSEVTFDEVLIDNAYRYACEDADV-----TLKLYN 503

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                  +E   ++      E  L  +   + + G +ID  ++ KL    + + K L++ 
Sbjct: 504 LFKDRIVKEKCFQIYETL--EIPLVDVLARMENNGIKIDQVILKKLSNSFSADLKTLEKK 561

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLI 278
           I KL+     +   T  L   L+    I     ++     T  ++L            L+
Sbjct: 562 IYKLSGEEF-NIASTKQLGDILYEKLKISGTKKTKKGNFATNVNVLEDLASKGNEFPKLV 620

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L     S       ++L E +  + +   T     A+ TGR +      QN+P       
Sbjct: 621 LEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQNIP------- 673

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +RS  ++  G  ++ AD + IE RVLA +A     
Sbjct: 674 -----------------IKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKEL 716

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            KAF N EDI+  T ++ F   I K++++ R   K +                    G+ 
Sbjct: 717 KKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINF--------------GIIYGIS 762

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               ++ +                               +     E    ++  K   + 
Sbjct: 763 SYGLAKQIS------------------------------VSNPEAEQFLFSYFKKFPEIR 792

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              ++  E                                 +    +R+  + ++     
Sbjct: 793 DYMQETLEFCRKNG--------------------------FVQTMFNRKCHFPNINDKNH 826

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632
              T  S   R            +Q  + DI+   M N        K    +++ +HDE+
Sbjct: 827 ---TLKSFQERAAINAP------IQGAAADIIRFAMINIDKKILSKKIKSRLLVQIHDEL 877

Query: 633 VSETPD-TPYFSVGTLCSLMTKNP--SWAKGLPLKAEGYEAKRY 673
           + ET D      +  + + M       +   +PL  +   AK +
Sbjct: 878 LLETKDMDLKKEIQKIKNEMENAIDGDYNFSVPLIVDANSAKNW 921


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 190/708 (26%), Gaps = 144/708 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ--------- 50
             + ID ET S  P            A +    + + +    +       +         
Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEI 434

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                     +   L  +           N+ ++R++  +  GI +     + T +    
Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRH-GIILNGV-VMDTLLADYI 492

Query: 103 NG--LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
               L  SL         F          K            +  Y        +   + 
Sbjct: 493 CDATLKHSLDEIAYREFGFKPKSFSDIV-KKGEDFSYVDIKSASMYCGMDVYLTRKLAII 551

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             Y  R  E + +L   L    + E+ L  +   I   G  ID   +  L   + +    
Sbjct: 552 --YINRLKETSIKLINLLK---EVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNT 606

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLA 274
           +++++  +      +      L   LF    +D            T  ++L         
Sbjct: 607 IEKEVYNIAGSEF-NLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHPI 665

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             +I+     S      ++ L + +    GR+         + TGR S      QN+P  
Sbjct: 666 VKIIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLSSSNPNLQNIP-- 722

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      S  +R   +     KL+ AD + IE R+L  ++
Sbjct: 723 ----------------------VRTEFSRRIRKAFLPQKDWKLLSADYSQIELRILTHLS 760

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           GE+    A+   ED++  T    F    D +  ++R IGK +   + Y  GA   +  A 
Sbjct: 761 GEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADERRIGKTINFGVIYGMGA---QRFAR 815

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+ L         +   E +        + +         + L+G         +   
Sbjct: 816 STGVSL--IEAKYFLSKFKERYPAVFKFLEYQERLALSQGFVETLLGRRR------YFHF 867

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++                                 L          I L ++RR      
Sbjct: 868 NKN-------------------------------GLGRLLGTPPNEIDLTTARRA----- 891

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
                      +Q +R            +Q  S DI+   M               I+L 
Sbjct: 892 --------GMEAQQLRAAANAP------IQGSSADIIKLAMIQLHSALRETGLAAKILLQ 937

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
           VHDE+V E           L    M         +PL  E      + 
Sbjct: 938 VHDELVLEVNPKDLEETKLLVQNTMENAVK--LSVPLIVETGVGVNWM 983


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 99/695 (14%), Positives = 179/695 (25%), Gaps = 151/695 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLL 58
           K+ +D ET   + +           A +   +++           + +     A    L 
Sbjct: 350 KVALDTETTDKEAIK----------AKLVGMSFSTAPGRAWYIPVSRETDTVKARLELLR 399

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115
            +     V+ V  N  ++  +     G+  P  R   T +        L  ++       
Sbjct: 400 PFWEKADVLIVGQNLKYDLTVLASY-GVK-PKGRLFDTMLSHYVVQPELAHNMDYLASVY 457

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN+     +   G              P     R       +   EY   D + T  L  
Sbjct: 458 LNYRPIPIEQLIG--------------PKGRGQRNMGDLDPKDVFEYACEDADVTLRLMA 503

Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              D E  L  +   +   G  +D + + ++         KL+ +I 
Sbjct: 504 PLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIY 563

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +L             +   LF    I             T + +L   +        IL 
Sbjct: 564 QLAGHPFM-ITSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILA 622

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      +  L + V+   G L  T      + TGR S      QN+P        
Sbjct: 623 HRGLKKLLSTYVEALPKLVNPQTGHLHTTFNQAV-TSTGRLSSSNPNLQNIP-------- 673

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             G     +R   I   G     AD + IE R++A ++ +   I
Sbjct: 674 ----------------VRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLI 717

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  GEDI+  T A+ F   + +VS+++R   K     + Y               +D+
Sbjct: 718 EAFKKGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYG-----ISAFGLAERMDV 772

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +        + F  + + + +     ++       +   G          R     +  
Sbjct: 773 SRTEARELIDNYFSTYPKVKEYMDSSIEKARRRGYIETAFGR---------RQYLADINS 823

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               +      V                                   +L    +      
Sbjct: 824 HNAVVRGYAERVAVNAPIQGTAADII---------------------KLAMIRIDQRLRA 862

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                         L   M           L VHDE+    P  
Sbjct: 863 EG----------------------------LKTKMI----------LQVHDELNFSIPPA 884

Query: 640 PYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   + S M     +   +PL+A+    K +
Sbjct: 885 ELECAKAIIVSEMESA--YQMSVPLEADCGTGKNW 917


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 117/705 (16%), Positives = 200/705 (28%), Gaps = 161/705 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55
              D ETR   PL             +   A A                     +  + +
Sbjct: 380 FAFDTETRGTNPLRD----------DLVGIALATIPGSGWYVPLGHTTGEAQLPRERVIA 429

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L  +  D     +AHN+ F+  + ++  GI +    +  T + A       +LK+    
Sbjct: 430 ALRPFFADPARSRIAHNAKFDIEVLERA-GIPVAGVAF-DTMLAAALLDKRRNLKDLAFY 487

Query: 116 -LNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            LN        +   GK           D P    T      A          + +  R 
Sbjct: 488 ELNLAAPLESIEALIGKGKNQ---VTFADVPIARATPYAAADADMTLRLKPALEAKL-RA 543

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   +   G  +D+  +  L E + +E +++++ I  +     
Sbjct: 544 AGSVADVFYRLEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYAIAGQTF 603

Query: 233 RSSRQTYALRMYLF------LITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNR 281
            +      L   LF        TG+D         +   L+ +   ++ T    +LIL  
Sbjct: 604 -NINSGDQLSEVLFGPKINLPTTGLDRTRTGRYSLTAQALEEL--QASDTTGIIELILRH 660

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   V+   GR+       GA  TGR S      QN+P         
Sbjct: 661 RRLSKLKSTYVDELPALVNPETGRVHTDYNQLGA-ATGRLSSNSPNLQNIP--------- 710

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR   IA+ G  L+ AD + IE RVLA + G+   I+
Sbjct: 711 ---------------TRTEEGREVRRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQ 755

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            F  G DI+  T A+ F      V K QR I K +   +                G+   
Sbjct: 756 TFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVI--------------YGISPF 801

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             +Q                                 +       +  +   +   +   
Sbjct: 802 GLAQR------------------------------LGISREQARGLIDSLFDQFPRIRDY 831

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                                         +   + + ++     RR    D++      
Sbjct: 832 IDR--------------------------TLDIGRSEGYVQSLFGRRRPMFDLRVS---- 861

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                   RE         + +Q+ + DI+   M               ++L VHDE++ 
Sbjct: 862 GPRRQAAEREAI------NHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIF 915

Query: 635 ETPDTPYFSVGTLC-SLMTKN-----PSWAKGLPLKAEGYEAKRY 673
           E P+     V  L    M        P +A  +PL+ E      +
Sbjct: 916 EAPEAEVDDVVALVRERMEGVLHGMEPPFA--VPLRVEIETGPNW 958


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 112/712 (15%), Positives = 186/712 (26%), Gaps = 178/712 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------S 51
             +D ET              A+Q  +   + A             Q            +
Sbjct: 354 FAMDTETDGLD----------AQQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIA 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGLP---S 107
            + + L   L D TV+ +  N  F+  + ++     +P       T +++          
Sbjct: 404 EIAAALNPILADPTVLKIFQNGKFDLAVLRRH---QMPVIAPIDDTMLISYAQEAGAHGH 460

Query: 108 SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +     L L  S        G              P    T             Y   D
Sbjct: 461 GMDELSVLHLGHSPISYDQVTGTGRNRL---PFPQVPIDKATA------------YAAED 505

Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T  L+  L P              ER L  +   +   G R+D   + ++    A  
Sbjct: 506 ADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFALR 565

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--------MSEGTLKSILSHS 268
              ++ +I +L      +      L   LF   G+                TL++I   S
Sbjct: 566 MADMETEIHQLAGRPF-NLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADES 624

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                A+  IL+    +       + L E V+       T      + TGR S      Q
Sbjct: 625 GHALPAR--ILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNLQ 682

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   IA  G  L+ AD + IE R+
Sbjct: 683 NIP------------------------IRTEEGSRIRRAFIADPGHVLISADYSQIELRL 718

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA +A       +FANGEDI+  T ++ F  P+  +    R   K +             
Sbjct: 719 LAHVADIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAIN------------ 766

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+                                   A    +          
Sbjct: 767 --FGIIYGIS------------------------------AFGLARSLAISPGEARQYID 794

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           A+ A++ G+    +   E                                 +V P  RR 
Sbjct: 795 AYFARYPGIRDYMERTKEEARING--------------------------FVVTPFGRRC 828

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------ 622
               +               R+            Q  + DI+   M              
Sbjct: 829 WVPGIADRNPARRGYA---ERQAINAPL------QGGAADIIKRAMVRLPAVLADNSFQT 879

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P+    +V  L  + M         +PL  E      +
Sbjct: 880 RMLLQVHDELLFEAPEAEAEAVARLVTTTMQDAAR--ISVPLVVETGIGTNW 929


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 89/697 (12%), Positives = 179/697 (25%), Gaps = 154/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
               D ET    PL           A +   ++A  +           S     +     
Sbjct: 353 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 402

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K   + +       T +            +       
Sbjct: 403 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 460

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K       +                   +   EY   D + T +L 
Sbjct: 461 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADVTLKLK 505

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P    E            L  +   +   G  +D   + +    +     KL++++
Sbjct: 506 NYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQEV 565

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +   T  +   LF    +             T + +L            +L
Sbjct: 566 YELAGAEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 624

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L E ++   G++  +      + TGR S      QN+P       
Sbjct: 625 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 676

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  N       AD + IE R++A ++G+  
Sbjct: 677 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 719

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G DI+  T AK +  P+++V+ + R   K     + Y               L
Sbjct: 720 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERL 774

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + +          F  + + + +         E    + +      L           +
Sbjct: 775 GIPRSESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFL---------PDI 825

Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                 +        +      SA  +  +  + +  ++R     L S   L   D    
Sbjct: 826 NSHNAVVRGYAERNAINAPIQGSAADIIKLAMVRI--YERFEEEGLKSKMILQVHDELNF 883

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
             Y                            +++             IVL          
Sbjct: 884 NVYKEE------------------------AEVVK-----------KIVL---------- 898

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         M         +PL A+  E + +
Sbjct: 899 ------------EEMENVMK--LQVPLIADCGEGENW 921


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 89/533 (16%), Positives = 162/533 (30%), Gaps = 87/533 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            ID ET S  P+           A +   + +                          + 
Sbjct: 361 AIDTETDSLDPMR----------ARLVGISLSVAPGEAAYLPLAHAYPGAPEQLPMAEVL 410

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +L +     +  N+ ++R +F    G+ I       T + +       P SL + 
Sbjct: 411 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 468

Query: 113 -CLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L        +   GK                         A  +   Y   D + T
Sbjct: 469 VSRHLGRDDTLSYEQVCGKGTK---------------AITFDQVALDVATRYSGEDADLT 513

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            ++ +RL P              E  +  + Q I   G  +D DL+      +  + + L
Sbjct: 514 LQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTL 573

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +   LF    + +   +      T + +L           
Sbjct: 574 EAQAFELAGGAF-NLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPR 632

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +IL+  + S         L + ++ D GR+        A  TGR +      QN+P    
Sbjct: 633 VILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 687

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G  +  +D + IE R++A ++ +
Sbjct: 688 --------------------VRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQD 727

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AFA GEDI+  T A+ F     +VS +QR + KV+   L Y              
Sbjct: 728 AGLLAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMS-----AFGLAR 782

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            L L++ +  +     F  +    ++    +    E    + + G    L   
Sbjct: 783 NLGLERSAAQLYIDRYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDI 835


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 111/699 (15%), Positives = 205/699 (29%), Gaps = 164/699 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDLLQ 59
             D E  S  P+           A +   +++ + E          D T   A+   L  
Sbjct: 358 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 407

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            L       + HN  ++ +L K+  G+++       T V           +L +     L
Sbjct: 408 VLA-RDTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARSVL 464

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+         G                     +      +    Y   D + +  L   
Sbjct: 465 NYKMVPIADLIGDETDR---------------DSMREVEVETAAPYACEDADISYRLADE 509

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L    +           E  L  +  T+   G R+D D++ ++   + +    ++E++ +
Sbjct: 510 LEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFE 569

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRL 282
           L      +   T  L   LF    + +V  +      T +S+L   +       L+L+  
Sbjct: 570 LAGEEF-NINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWR 628

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           ++       L++L E V    GRL  +      + TGR S      QN+P          
Sbjct: 629 STYKLKSTYLDSLGELVHPETGRLHTSFNQT-RTATGRLSSSDPNLQNIP---------- 677

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +  +G  L+ AD A IE R+LA ++G+D     
Sbjct: 678 --------------IRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRAT 723

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G DI+    A+ +    + V+ EQR+  K +                    G+    
Sbjct: 724 FQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWG 769

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            +Q                                ++     + + K +R  + GV QL 
Sbjct: 770 LAQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLL 799

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +L E           +                           RR    D+    S   
Sbjct: 800 NELVEKAQDKGYAETLL--------------------------GRRRYLPDIDSSNSNAR 833

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSE 635
           +A  ++              +Q    D++   M               ++L VHDE+V E
Sbjct: 834 SAAERV---------AVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFE 884

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            P     +  T+    M         +P+  +      +
Sbjct: 885 VPPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 922


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 91/692 (13%), Positives = 179/692 (25%), Gaps = 156/692 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D ET    PL             +   ++  +         +   A    +   L    
Sbjct: 382 FDTETTGLNPLMDN----------LLGVSFCAEPHKAWYMPVS-GPADLEAVRPLLEGPA 430

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-ALNFSEHL 122
              + H+  F+  +  +  GI +    +  T +       G+   +       L +S   
Sbjct: 431 -EKIGHHLKFDLEVL-RANGIHVKG-PFFDTLLAHALIAPGMKHGMDVLAENLLQYSTIK 487

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            K                                ++ G+Y   D + T +L   L     
Sbjct: 488 LKD-------------IAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVK 534

Query: 183 G----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   +   G R+  + + K    +      L E I +     +
Sbjct: 535 ESGMEKLFRTVELPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPL 594

Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L  +LF    +      ++     T +  LS           IL    +   
Sbjct: 595 -NLNSPKQLGDFLFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYRENMKL 653

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               L+ L + +   DGR+         + TGR +      QN+P               
Sbjct: 654 KSTYLDALPKYICPRDGRIHTQFHQ-MLTATGRLASQDPNLQNIP--------------- 697

Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R+  +  S    ++ AD + IE R++A ++G+     AF  G
Sbjct: 698 ---------VRTEQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREG 748

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI+  T A+ +  P D+V    R   K +                    G+        
Sbjct: 749 RDIHTETAARVYGIPRDQVDAVMRRAAKTVN--------------FGIIYGIS------- 787

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      + +          + + +  +   V    +DL 
Sbjct: 788 -----------------------AFGLSQRLGCPRGEAATLIENYFTQFPVVKSFMEDLV 824

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                       +                           RR +  ++        T  S
Sbjct: 825 HKAEQAGYAETLL--------------------------GRRRMIPEINSAN---KTIKS 855

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641
              R            +Q  + D++   M +  K        ++L +HDE++ +      
Sbjct: 856 AAERTAI------NTPIQGTAADMIKIAMIHVDKLLKGTRSRLILQIHDELLVDLHRDEL 909

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  +   M        G+P+  E      +
Sbjct: 910 DLIPKIEEAMVSALPLPNGVPILVEARTGGNW 941


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 95/697 (13%), Positives = 193/697 (27%), Gaps = 152/697 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDL 57
           +++  D ET S  PL          +A +   A++W+          E       +  +L
Sbjct: 369 NRVCFDTETTSLDPL----------EAELVGIAFSWEAHKGFYLPVPEGREAAGEVLEEL 418

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +   +T+  V  N  ++  +     GI +       T +           ++      
Sbjct: 419 RPFFESDTIEKVGQNLKYDIKVLSTY-GIPVRG-PLFDTMLAHYLINPDMRHNMDVLAET 476

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN++        GK    +                      +   EY   D + T +L 
Sbjct: 477 YLNYTPVPISDLIGKKGKNQLS--------------MRDVPLEDQTEYAVEDADITLQLA 522

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   P            + E  L  +   +   G  +D   + KL   + ++ + L   I
Sbjct: 523 QLFGPELREAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKI 582

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI--DLVDM---SEGTLKSILSHSNITQLAKDLIL 279
            +       +      L   LF    +             T + +LS          ++L
Sbjct: 583 YEAAGEEF-NIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVL 641

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +    +      ++ L + V+   GR+        A  TGR S      QN+P       
Sbjct: 642 DYRGLTKLKSTYVDALPQQVAPSTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------- 693

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I      +L+ AD + IE R++A ++ ED 
Sbjct: 694 -----------------IRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDT 736

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I++F  GEDI+  T A+ F  P+++V++EQR+  K +   + Y                
Sbjct: 737 MIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQT 791

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           +L +        + ++ + +  ++     D   E      ++G          R   + +
Sbjct: 792 NLSRTEAKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGR---------RRYLKDI 842

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +               +                          ++    +    
Sbjct: 843 NGSNAVVRGAAERNAVNAPIQGSAADII---------------------KIAMIRIYQKL 881

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N  T                             +                 +V +  
Sbjct: 882 REGNFKTR---------------------------MLLQVHDE-----------LVFDCY 903

Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +V   + S M      A  +PL  +    + +
Sbjct: 904 RGEADTVSALIKSEMESAYELA--VPLVVDMGFGETW 938


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 88/533 (16%), Positives = 162/533 (30%), Gaps = 87/533 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54
            ID ET S  P+           A +   + +                          + 
Sbjct: 349 AIDTETDSLDPMR----------ARLIGISLSVTPGEAAYLPLAHAYPGAPEQLPMAEVL 398

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +L +     +  N+ ++R +F    G+ I       T + +       P SL + 
Sbjct: 399 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 456

Query: 113 -CLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L        +   GK                         A  +   Y   D + T
Sbjct: 457 VSRHLGRDDTLSYEQVCGKGAK---------------AITFDQVALDVATRYSGEDADLT 501

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            ++ +RL P              E  +  + Q I   G  +D DL+      +  + + L
Sbjct: 502 LQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTL 561

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +   LF    + +   +      T + +L           
Sbjct: 562 EAQAFELAGGAF-NLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPR 620

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           +IL+  + S         L + ++ D GR+        A  TGR +      QN+P    
Sbjct: 621 VILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   +A  G  +  +D + IE R++A ++ +
Sbjct: 676 --------------------VRTAEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQD 715

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + AFA GEDI+  T A+ F     +VS +QR + KV+   L Y              
Sbjct: 716 AGLLAAFAAGEDIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMS-----AFGLAR 770

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            L L++ +  +     F  +    ++    +    E    + + G    L   
Sbjct: 771 NLGLERSAAQLYIDRYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDI 823


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 107/721 (14%), Positives = 184/721 (25%), Gaps = 177/721 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
            + ID ET              A ++ +   + A                          
Sbjct: 372 YIAIDTETVIEP---GAPFDVDALRSRLVGLSIAVAPGEAYYLPFAHRRDDGSGNLALLA 428

Query: 50  -------------------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
                                     S   + L   L D +V  +A N+ ++ ++  ++ 
Sbjct: 429 GDTGTGIVGRRINAGAPEPVNLPPFDSDACAPLRAMLEDPSVTKIAQNAKYDLLVL-RSS 487

Query: 85  GIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSI 140
           G+ +    +  T + +           L       L  +        GK           
Sbjct: 488 GVRVAGVGF-DTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVGKGKTQL------ 540

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLL 190
                       V       +Y   DV+ T  L  +L P+           + E  L  +
Sbjct: 541 ---------PFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSV 591

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  IDLD    L+   A ER ++++ I         +      LR  LF   G
Sbjct: 592 LAEMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAGEEF-NINSNPKLRAILFEKLG 650

Query: 251 IDLVDMS---EGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
           + +   +     T  S+L        +   L++            ++ L   V    R  
Sbjct: 651 LPVKKKTATGPSTDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRL 710

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T      S TGR S      QN+P                                +R 
Sbjct: 711 HTSYSQTVSATGRLSSHDPNLQNIP------------------------IRRELGRDIRR 746

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +   G +L+ AD + IE RVLA ++ +   + AF  G DI+  T A  F  P++ V+ 
Sbjct: 747 GFVPREGWRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTS 806

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           E RA  K +  A  Y  GA           L +          + FE +           
Sbjct: 807 EMRARAKTINFATIYGQGAHAL-----SRQLRITNAEAKAFIETYFERFAGVRGFLDQCV 861

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                    + L            R     + +   ++      V Q      +      
Sbjct: 862 VDARARGYVETLFKR---------RRYIPELKERNFNIRAFGERVAQNAPIQGSAADLI- 911

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                               ++   +V+        A+                      
Sbjct: 912 --------------------KIAMINVRNAIDAEGLASR--------------------- 930

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                  +                E+V E P     ++  L    M         +PL  
Sbjct: 931 ------MLLQVHD-----------ELVFELPVEEADTLSALVKREMEGAA--VLNVPLLV 971

Query: 666 E 666
           E
Sbjct: 972 E 972


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 109/696 (15%), Positives = 199/696 (28%), Gaps = 151/696 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             +  D ET +   +           A +   ++++          +E            
Sbjct: 377 KAVAFDTETTTLNEM----------DAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
            ++   E V  VAHN  F+  + ++  G  +       T +            +      
Sbjct: 427 REFFEKEDVSKVAHNLKFDYKILQQY-GFSLKGL-LFDTMIAHYLLNPDGKHVIDYLSEI 484

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN+     +   GK    +                      +    Y   D + T +L+
Sbjct: 485 YLNYKPVALESLIGKKGKNQL--------------TFRSLTVEEQTNYAAEDADITWQLY 530

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   P    E            L  +   +   G  +D   + +    +  + + L+  I
Sbjct: 531 EVFAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVALDEKWLAQESIDLENDLRGLEAKI 590

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279
            +L D    +      L   LF    +D     ++     T + +L   +        IL
Sbjct: 591 FELADVEF-NVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQKLSAKHDIIKYIL 649

Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L   +  D  R+  +     A  TGR +      QN+P       
Sbjct: 650 EYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTA-ATGRLASVNPNLQNIP------- 701

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                               L    +R   +A+ GKK++ AD + IE R++A I+ E+  
Sbjct: 702 -----------------IRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENM 744

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I AF NGEDI+V+T A+ F+ P+++V+K QR   K +   + Y  G       A      
Sbjct: 745 ILAFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQG-----AFALAEQTG 799

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           L +        S FE++ + + +      +  E    + ++     L         + + 
Sbjct: 800 LSRTEAKQMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHL---------KDIN 850

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +               +                          +L    +    S
Sbjct: 851 SANFVVKAHAERNAVNAPIQGSAADVI---------------------KLAMIKIDQKLS 889

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
            LN                            L   M           L VHDE++ E P 
Sbjct: 890 ELN----------------------------LKTKML----------LQVHDELLFEAPQ 911

Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                V  L    M         +PL  E      +
Sbjct: 912 EEVEMVMKLIKTEMESAFE--TKVPLLVEVGVGDNW 945


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 106/697 (15%), Positives = 191/697 (27%), Gaps = 154/697 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPS--DL 57
             D ET S  PL           A +   + A  +     +             P     
Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411

Query: 58  LQY------LRDETVMCVAHNSLFERIL-FKKTLGIDIPSKRWICTSVLARTNGL---PS 107
                    L D  +  + HN  F+        L   I       T + A          
Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 470

Query: 108 SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +       L       K    K           ++ PY    A+       F  Y K  
Sbjct: 471 GMDKLAESILGVKTIRFKDLV-KQGQNFSDIPLKEACPYAAEDAD-----ITFRFYKKFL 524

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +   ++L    D E  +  L   +  +G  +  + +    + + +E +  ++DI +
Sbjct: 525 PLLKKNNLEKLF--FDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYR 582

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L+  LF    +     ++    T  S+L +          IL+  A
Sbjct: 583 LVGHEF-NIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKILDYRA 641

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            +       +TL +    +GR+  +    G + TGR S      QN+P            
Sbjct: 642 LAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIP------------ 688

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G     +R    A  G+ L+ AD + IE  +LA ++ +   ++AF 
Sbjct: 689 ------------IRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFN 736

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D++  T +  F   I  VS++ R I K +                    G+      
Sbjct: 737 TGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINF--------------GVMYGMS----- 777

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A   ++     +   KA+ A + GV     +
Sbjct: 778 -------------------------AFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 812

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           + +           +                           RR     +          
Sbjct: 813 VCQEAEQRGYVETLM--------------------------GRRRYLPAINSKNKVEKAG 846

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
             ++              +Q  + DI+   M    K          I+L VHDE++ E  
Sbjct: 847 AERI---------AVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAA 897

Query: 638 DTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           ++    V +L    M         +PL+        +
Sbjct: 898 ESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSW 932


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 89/697 (12%), Positives = 179/697 (25%), Gaps = 154/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58
               D ET    PL           A +   ++A  +           S     +     
Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEVAKVVERFS 398

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K   + +       T +            +       
Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456

Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           L +     +   G K       +                   +   EY   D + T +L 
Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADITLKLK 501

Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P    E            L  +   +   G  +D   + +    +     KL++++
Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +L      +   T  +   LF    +             T + +L            +L
Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 620

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                       ++ L E ++   G++  +      + TGR S      QN+P       
Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  N       AD + IE R++A ++G+  
Sbjct: 673 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +G DI+  T AK +  P+++V+ + R   K     + Y               L
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERL 770

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + +          F  + + + +         E    + +      L           +
Sbjct: 771 GIPRSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFL---------PDI 821

Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                 +        +      SA  +  +  + +  ++R     L S   L   D    
Sbjct: 822 NSHNAVVRGYAERNAINAPIQGSAADIIKLAMVRI--YERFEEEGLKSKMILQVHDELNF 879

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
             Y                            +++             IVL          
Sbjct: 880 NVYKEE------------------------AEVVK-----------KIVL---------- 894

Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         M         +PL A+  E + +
Sbjct: 895 ------------EEMENVMK--LQVPLIADCGEGENW 917


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 198/700 (28%), Gaps = 154/700 (22%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP--------S 55
            L ID ET S           +A    +   + AW                P         
Sbjct: 449  LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 498

Query: 56   DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
             L   L    +  V HN  F+ I+  ++ G+ +       T V             L + 
Sbjct: 499  ILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDDL 556

Query: 113  C-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                L+ +    K     GK  I        D  P                 Y   DV+ 
Sbjct: 557  AQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSP-----------------YACEDVDV 599

Query: 170  TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
               L   L              + E  L  +   +   G  ++ D + K+ E   ++   
Sbjct: 600  PIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIAD 659

Query: 220  LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276
            L   +         +      L + LF   G+ ++  ++    T   +LS   +     +
Sbjct: 660  LRALVFSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAE 718

Query: 277  LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +L    ++      ++ L + +    GR+  + +   A  TGR S      QN+P    
Sbjct: 719  HVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVA-ATGRLSSSEPNLQNIP---- 773

Query: 336  SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+   A   G  L+ AD + IE RVLA  +G
Sbjct: 774  --------------------IRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 813

Query: 395  EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
            ++  I A+ +  DI+    A+       +V+ + R I K +   + Y             
Sbjct: 814  DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLA 868

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
              L +            F+ +   E+  +    +         ++G   E+         
Sbjct: 869  KTLGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREI--------- 919

Query: 515  QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                   K + +                                   LP S+R   ++ +
Sbjct: 920  -------KGVRDLAK--------------------------------LPESKRRSLTEPE 940

Query: 575  GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                 +    +     +    ++ E + Q    D+    +                 ++ 
Sbjct: 941  RIAINMPIQGTAADLIKLAMLRVHEQLKQ---SDLQARLLLQIHDE-----------LLL 986

Query: 635  ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+PD    ++  T+   MT        +PLK +    + +
Sbjct: 987  ESPDEELDALSDTIREAMTSVME--LDVPLKVDVAHGRTW 1024


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 191/691 (27%), Gaps = 137/691 (19%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMP 54
           M +  +  D ET   + L          +  +   A++++           D+ E   + 
Sbjct: 405 MKQTAVCFDTETTGLKAL----------EVELIGIAFSYETGKGYYVSFPEDQAETQRIL 454

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGL--PSSLKN 111
            D   +   E +  + HN  ++  +        +P K     T +           ++  
Sbjct: 455 EDFRPFFESE-IEKIGHNLKYDIKVLSTY---KMPVKGKLFDTMIAHYLINPDMRHNMDV 510

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                LN+         GK    +        P  + T      A   F        E  
Sbjct: 511 LAETYLNYQPISIAELIGKKGKNQLSM--RSVPLKEQTEYAVEDADITFQLKQLFTGELE 568

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                +L    D E  L  +   +   G  ++ D + +L   +  +  +L++ I +    
Sbjct: 569 NGNVTKLFN--DIELPLVSVLTAMEIEGINVNTDFLKELSVALTADIDRLEKSIYEQAGE 626

Query: 231 IIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285
              +      L + LF    +      ++     T + ILS+          I       
Sbjct: 627 EF-NIASPKQLGIVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEHDIIKDIQEYRQYK 685

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 ++ L   V+   GR+        A  TGR S      QN+P             
Sbjct: 686 KLQSTYVDALPNEVNPKTGRIHTQYMQAVA-ATGRLSSNNPNLQNIP------------- 731

Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              VR   +       L+ AD + IE R++A ++ E+  I AF 
Sbjct: 732 -----------IRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAALSEEENMINAFK 780

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           NGEDI+ +T AK FN P+++V+++QR+  K +   + Y                DL +  
Sbjct: 781 NGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVS-----AFGLSNQTDLSRSE 835

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                 + +E + + +++     D   E    + ++     L     R            
Sbjct: 836 AKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAV--------- 886

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +  G            +                          +L   +++         
Sbjct: 887 VRNGAERNAVNAPIQGSAADII---------------------KLAMINIQKRFEKEGFR 925

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
           +                             +                 +V +T       
Sbjct: 926 SR---------------------------MLLQVHDE-----------LVFDTHKDELEI 947

Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +    M         +PL  E    + +
Sbjct: 948 IKPIIKYEMEHAFK--MSVPLDVEVGIGENW 976


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/717 (15%), Positives = 191/717 (26%), Gaps = 171/717 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL------ 57
           + ID ET S +          A +A +   + A                    L      
Sbjct: 328 VAIDTETDSLK----------ARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAA 377

Query: 58  ----------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
                              LRD  V+ V HN  F+  +       D+       T VL+ 
Sbjct: 378 PPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLANAGLSDVAP--VDDTMVLSY 435

Query: 102 TNG---LPSSLKNACL-ALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQA 155
                     +       L       +   GK    I         +  Y    A+    
Sbjct: 436 VLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLR 495

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
             L     +   E    + + L      +R +  +   +   G R+D   +  L    A+
Sbjct: 496 LYLLLR-DRLLKEHMVRVHETL------DRPMVRILTDMEAAGVRVDALRLKALSGDFAK 548

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNI 270
               L++ I  L      +      L   LF    +          +  T   +L     
Sbjct: 549 RMGDLEDQIHALAGHAF-NVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQLAA 607

Query: 271 T-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   +L+    +       + L   +    GR+  T      + TGR S      Q
Sbjct: 608 EGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTV-TATGRLSSNDPNLQ 666

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                            A   +R   IA+ G  L+ AD + IE R+
Sbjct: 667 NIP------------------------VRSEAGRKIREAFIAAPGHLLISADYSQIELRL 702

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A +AG     +AFA G+DI+  T ++ F  P++ +    R   K +             
Sbjct: 703 VAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAIN------------ 750

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+                                   A +  +          
Sbjct: 751 --FGIIYGIS------------------------------AHGLAQQLGVGRPEAAAFIT 778

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           A+ A+   +    + + E    V                            +  P  RR+
Sbjct: 779 AYFARFPEIRSYMETVKEEARTVG--------------------------WVATPFGRRI 812

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGY-- 622
               ++              R+           +Q  + DI+   M        + G   
Sbjct: 813 PIPGIQDKNPAARAFA---ERQAINAP------IQGGAADIIKRAMIALPPALEQAGLAT 863

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG-----LPLKAEGYEAKRY 673
            ++L VHDE++ E P+    +   L   +M    +         +PL+ +   A  +
Sbjct: 864 RMLLQVHDELIFEAPEAEAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASW 920


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/697 (13%), Positives = 192/697 (27%), Gaps = 152/697 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----L 57
            ++  D ET S   +          +A I   A +++          E  ++       L
Sbjct: 356 KEICFDTETTSLNEM----------EAQIVGLALSYEIHKGYYILFPEDFSLAKQWFLLL 405

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114
             +  +E+++ +  N  ++  +     GI++  + +  T +           ++      
Sbjct: 406 KPFFENESILKIGQNLKYDFKILANY-GIEVKGE-FFDTMIAHYLLNPDMRHNMDLLSEA 463

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L +S    +   GK    +                      +L  EY   D + T +L 
Sbjct: 464 YLGYSPISIETLIGKKGKGQL--------------TMRAVPAELQKEYAVEDTDVTLQLK 509

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +PL +           E  L  +   +   G R+D   + +L + IA +   L++ I
Sbjct: 510 HVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTI 569

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQLAKDLIL 279
                    +      L   LF    +             T + +LS           +L
Sbjct: 570 F-SQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVL 628

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              A        +  L   V+   GR+  T      + TGR S      QN+P       
Sbjct: 629 EFRALQKLQSTYIEALPREVNPHTGRIHTTFMQAV-TATGRLSSNQPNLQNIP------- 680

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +       L+ AD + IE R++A ++ ED 
Sbjct: 681 -----------------IRTPRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDH 723

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF  G+DI+ +T AK F  P++ V+KEQR+  K +   + Y         +      
Sbjct: 724 MIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVS-----AIGLSQQT 778

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            L +        + ++ + + +++         E      ++G          R     V
Sbjct: 779 SLSRSQSKELIDTYYQTYPKLKTYIEKQIFFAREHGYVQTILGR---------RRYLPDV 829

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               + +               +                          ++    +    
Sbjct: 830 YSRNQVVRGAAERNAVNAPIQGSAADII---------------------KIAMVRIAQRI 868

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                AT                             +                 ++ + P
Sbjct: 869 QKEGLATR---------------------------MLLQVHDE-----------LLFDVP 890

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                    L    M    +    +PL  E      +
Sbjct: 891 KKELEVAKALIREEMENAYTLI--VPLIVEIGTGNNW 925


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/693 (14%), Positives = 194/693 (27%), Gaps = 139/693 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55
           +L +D ET S  P           QA +   + +             +       + +  
Sbjct: 345 ELAVDTETNSLDP----------HQADLVGISLSSKVGKACYIPIGHKSSKCINKNDVIK 394

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L D +V  +  N  F+ I+  K  GI++       T +++          ++   
Sbjct: 395 KLKPLLEDPSVKKIGQNIKFDFIVLFKQ-GIEM--TSMEDTMLMSYVLDAGKNRHNMDTL 451

Query: 113 CL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L       K     GK  I         +  Y    A+       F  Y K     
Sbjct: 452 SEIHLGHKTISFKEIVGTGKKEINFSDVEIERAKDYAAEDAD-----ITFRLYKKFSKNL 506

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E    +  +   E+ L  +   +   G  +D   +  L     ++ K L+++I K++ 
Sbjct: 507 KLEKMINIYEI--FEKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLEKEIFKISK 564

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLAS 284
               +      L   ++    I  +  ++     T  S+L            L+L+    
Sbjct: 565 KDF-NIASPKQLGEIIYNDLKIAELKKTKKGSFATSASVLEDLAFKGHKFPKLVLDWRQV 623

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           S       ++L E ++ + +   T     A+ TGR +      QN+P             
Sbjct: 624 SKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIP------------- 670

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R    +     L+ AD   IE R+LA +A      KAF N
Sbjct: 671 -----------IKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKN 719

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T ++ FN  I KV ++QR   K +   + Y               +++  +  
Sbjct: 720 DEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYG-----ISQYGLAKQINVSNYEA 774

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + F  + + + +         +    + + G          R+   G+     ++
Sbjct: 775 EEFLDAYFAKFPEIKIYMNDTIKFCRKSGYVNNIFGR---------RSHFNGINDKNFNV 825

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                          +                          RL    +    S      
Sbjct: 826 RNFQERAAINAPIQGSASEI---------------------MRLAMIRLNKKLSDKKN-- 862

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                            +Q+       + +                E++ E P     ++
Sbjct: 863 -----------------IQS-------KMLLQIHD-----------ELIFEVPKNNEKTM 887

Query: 645 -GTLCSLMTKNPS---WAKGLPLKAEGYEAKRY 673
              +   M         +  +PL  +      +
Sbjct: 888 IKLIKDEMASVVKSDHHSFSIPLTVDINVGDNW 920


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 106/684 (15%), Positives = 189/684 (27%), Gaps = 146/684 (21%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA +   A A             +                          L   L    
Sbjct: 435  MQAELCGLALALTPNEACYIPLGHKQSGDGDGLFAAGLAPDQIGTRDALEALRPLLESPG 494

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEH 121
            V+ +  N  F  +L  +     +  +      +++           L       L     
Sbjct: 495  VLKIGFNIKFTAVLLAQH---GLTLQNHDDVQLMSYALDAGRHAHGLDALAENWLGHKAL 551

Query: 122  LTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLI 178
                  G  KA +         +  Y    A+  ++ W++         E    +++ L 
Sbjct: 552  SYGEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLT--AERMMTVYETL- 608

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 ER L  +   +  RG  ID  ++ +L    AQ   +++ +I ++    + +    
Sbjct: 609  -----ERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAGEEL-NIGSP 662

Query: 239  YALRMYLFLITGIDLVDMSE----GTLKSILSHS--NITQLAKDLILNRLASSGSAILKL 292
              L   LF   G+     ++     T  SIL        Q  + ++  R  S   +    
Sbjct: 663  KQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRST-YT 721

Query: 293  NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            + L   V        T     A+ TGR S      QN+P                     
Sbjct: 722  DALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP--------------------- 760

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       +R   IA+ G KLV AD + IE R+L+ +A       AF +G DI+  T
Sbjct: 761  ---VRTEDGRKIRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMT 817

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             ++ F  P+  +  E R   K +   + Y               L + +          F
Sbjct: 818  ASEMFGVPVKDMPGEVRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAGAYIKKYF 872

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
            E +     +    ++        + L G  C       +A +  +               
Sbjct: 873  ERFPGIRDYMDATKEFCRAHGYVETLFGRKCHYPDI--KASNPSIRAFN---ERAAINAR 927

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
             +G +    R A V                                              
Sbjct: 928  LQGTAADIIRRAMVRMED------------------------------------------ 945

Query: 593  YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651
                       A++   L   M           L VHDE++ E PD     ++  +  +M
Sbjct: 946  -----------ALAAKQLSAQML----------LQVHDELIFEVPDDEVAATLPVVQQVM 984

Query: 652  TKN--PSWAKGLPLKAEGYEAKRY 673
                 P+    +PL+ +   A  +
Sbjct: 985  QDAPFPAVLLSVPLQVDARAADNW 1008


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 178/699 (25%), Gaps = 171/699 (24%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQ 59
           D ET +  P            A +     AW+           Q        A+ + L  
Sbjct: 375 DTETNNLDP----------RHARLVGIGCAWEPGVAYYLPLAHQQGSNLETDAVVAALTP 424

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           Y +D     V  N+ ++ ++ +   G+ +    +    + +         +L       L
Sbjct: 425 YWQDRERPKVLQNAKYDWLVLRNY-GVALAGIAF-DPMLASYVLDPEGKHNLMTLAQNHL 482

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +    +    K                                YC  D   T  L   
Sbjct: 483 QITMGSYEALVPKGQ------------------TIDAVEIAAVSRYCGEDAAVTLRLVPV 524

Query: 177 LIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L    D            E  L  +   + +RG RID   + +L + + ++ + L+++  
Sbjct: 525 LQAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAY 584

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILN 280
            L      +      L   LF   G+      +      T  ++L          + IL+
Sbjct: 585 TLAGSKF-NLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILS 643

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      ++ L   V     R+         + TGR S      QN+P        
Sbjct: 644 YRTLAKLKSTYVDALPLLVDPRTDRVHTDFNQTV-TTTGRLSSSNPNLQNIP-------- 694

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                S  +R   +   G  LV AD + IE R+LA +  E   +
Sbjct: 695 ----------------VRTSFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLL 738

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF                                        G              ++
Sbjct: 739 EAFQT-------------------------------------GGDVHTLTARLLLGREEV 761

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            +  ++ +        FA +  +  T  E   KA+  ++  V  
Sbjct: 762 TSEE---------RRLAKIINYGVVYGMGARRFARETGVSATEAEDFIKAFYRRYPAVFG 812

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +               +  RR       + +R +                        
Sbjct: 813 FMEQTRRMAVEQGYVETLLGRRRYFRGLGQLNQRDRE----------------------- 849

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSE 635
                   +R            +Q  + DI+   M    +        ++L VHDE+V E
Sbjct: 850 ------GALRAA------FNAPIQGTAADIIKIAMVRLEQTLAGRRTRLLLQVHDELVFE 897

Query: 636 TPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            P      V  L    M         +PLK E      +
Sbjct: 898 MPPEERPEVEPLIRSGMENALDLL--VPLKVELNAGPNW 934


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/709 (13%), Positives = 184/709 (25%), Gaps = 169/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           + +D ET     +      A      +   + A                           
Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLP 395

Query: 53  ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106
              + + L   L D++V+ +  N  ++  + ++  GI+I    +  T V++         
Sbjct: 396 LPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAP--YDDTIVMSFDLDAGQSL 452

Query: 107 --SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
               +  A    LN      K   G                     +          EY 
Sbjct: 453 AGHGMDEAARVHLNHVCISFKDVCGTGRSQ---------------ISFAEVPLDKATEYA 497

Query: 164 KRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             D + T  L++        E          R L  +   +   G ++D + + +L    
Sbjct: 498 AEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRLSAEF 557

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHS 268
                 L+ +I  L      +   T  L   LF   G       +       +  +    
Sbjct: 558 TAGIAALEGEIHALAGQPF-AIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILEQLK 616

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                    +L+    S       + L   ++ D GR+  +    GA +TGR S      
Sbjct: 617 AQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGA-QTGRLSSTDPNL 675

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R   +A  G  ++ AD + IE R
Sbjct: 676 QNIP------------------------IRTEVGRQIRHAFVAEPGNVILAADYSQIELR 711

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           + A +A      +AFANGEDI+  T  + F     +V+++ R   K +  A+ Y      
Sbjct: 712 LAAHMADVPALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG----- 762

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                    L++         +  +E +     +     ++       + L G       
Sbjct: 763 ISRWGLAGRLEISADEAQDMISRYYERFPGISLYITDTIEKARSRGYTETLFGRK----- 817

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                    +    +   +G                                       +
Sbjct: 818 ----TWFPRIKAPVQHERQGAERAAINAPIQGTSADII---------------------K 852

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
              + +    +       +                           M           L 
Sbjct: 853 RAMARMGPALAAEGLHRVK---------------------------ML----------LQ 875

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+         +  +M     P     +PL  E      +
Sbjct: 876 VHDELVFELPEGDVEHAGAVIRRVMEGAAEPIVKLSVPLGVEIGHGSSW 924


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 202/707 (28%), Gaps = 171/707 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53
           L ID ET    P+           A +   ++   +                        
Sbjct: 317 LAIDTETTGTDPMR----------ADLVGVSFCLKEGKAFYLPVGHHYLGVPAQVSWPDA 366

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L   L D+ V+ V  N  ++  + K+  G+ +    +  T + +          +L 
Sbjct: 367 RDVLKDVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGISF-DTMIASYVINPGLRQHNLD 424

Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 LN      K   GK   AR  +                   +   EY   D + 
Sbjct: 425 ALAQRYLNHKMISYKDVVGKGKNARGFEEVS---------------LEKACEYSCEDADM 469

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T  L + L              + E  L  +   +   G +ID  L   +    A+E K+
Sbjct: 470 TFRLRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQ 529

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274
           +++ I         +      L   LF +  +     +       T   +L     +   
Sbjct: 530 VEKKIQADAGMEF-NLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRI 588

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              IL   + +      L+ L   V+    R+  +     A  TGR S      QN+P  
Sbjct: 589 AREILRFRSLAKLKSTYLDALVRMVNPETKRVHTSFNQTVA-ATGRLSSSDPNLQNIP-- 645

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                   G A   +R   +A +GK LV AD + IE RV A  +
Sbjct: 646 ----------------------IRGDAGKNIRKGFMAGSGKILVAADYSQIELRVFAHYS 683

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   + AF   +DI+  T  +       +V+ E R I K +                  
Sbjct: 684 QDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINF--------------GI 729

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+  Q+ S+ +                               +   A +    A+  +
Sbjct: 730 IYGMGPQKLSEELS------------------------------ISKEAAQDYINAYYDR 759

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           ++GV +  +   E            +                          RR    D+
Sbjct: 760 YKGVKRFKEKAIETALEKGYVTTLFN--------------------------RRRYLPDI 793

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627
             + + + +   ++              +Q  + D++ + M               ++L 
Sbjct: 794 SHNNNRIRSEAERM---------AVNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKMLLQ 844

Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+     +   +   M         +PLK +  +   +
Sbjct: 845 VHDELLLEVPEEEADDLINMIREEMEGVYP--LRVPLKVDIGKGLNW 889


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 185/658 (28%), Gaps = 151/658 (22%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAM--PSDLLQYLR---DETVMCVAHNSLFERI-LF 80
            A I   A++ +              +     L + L            H++   R  + 
Sbjct: 347 SAGILGLAWSAEPGSGGYL---AGEELQPADKLTRILDTVLWTKGWVCFHDAK--RTDIL 401

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            + LG   P +    T + A       S  +                    I    +   
Sbjct: 402 LRRLGNK-PVRAGFDTMLAAYLLDPSVSNLDLAAL---------------SIKYLGQELS 445

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
               Y    A      +L     ++  E        L    D E  L  +   +   G +
Sbjct: 446 PGEDYRSFCAQADIILRLVPVLHEKLAELNM-----LDLYFDVEMPLLHILADMEFSGVK 500

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D + +  +   ++ E  ++  DI +L      +   T  L   LF   G+ ++  ++  
Sbjct: 501 LDKEYLEAMSVDLSTEIDRITGDIYRLAGEEF-NINSTRQLGTILFEKLGLPVIKKTKTG 559

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
             T   +L            +L+           ++ L   ++   G++  T      + 
Sbjct: 560 YSTDVEVLETLAERHEIVARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFNQTV-TA 618

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   +    G  
Sbjct: 619 TGRLSSTEPNLQNIP------------------------IRMEEGRRIRKAFVPSEPGWI 654

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + IE R+LA ++G++  ++AF N EDI+  T A+ F   +++V+ E R+  K +
Sbjct: 655 ILSADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAV 714

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               + + +        + F  +   + +         E    
Sbjct: 715 NFGIVYG-----ISDFGLAKNISVSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYV 769

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L+           R     +L   +++                               
Sbjct: 770 TTLLNR---------RRYLPDILSPNRNIRSF---------------------------- 792

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                              G+ + +NT                   +Q  + DI+   M 
Sbjct: 793 -------------------GERTAMNTP------------------IQGSAADIIKLAMV 815

Query: 616 NATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                         ++L VHDE++ E P      V  +    M         +PLK +
Sbjct: 816 RVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMENTVK--LTVPLKVD 871


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 191/707 (27%), Gaps = 165/707 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50
             ID ET S   +           A +   + ++            Q             
Sbjct: 357 FAIDTETNSLDTMV----------ANLVGISLSYRPGEAFYIPIGHQNKSDPSIKKQLKL 406

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107
             + S +  YL D TV  V  N  ++  +F K     I       T +++ +        
Sbjct: 407 KDVLSVIKPYLEDPTVKKVGQNIKYDYRIFLKH---GIQMNSIEDTMLMSYSLDAGKNRH 463

Query: 108 SLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            +       LN      K   G  K+ +                        +   +Y  
Sbjct: 464 GMDLLSELHLNHKTISFKDVAGIGKSQVTFDFVDI-----------------EQAKDYAC 506

Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T  L+K                + E+ L  +  ++ + G +ID +++ KL +   
Sbjct: 507 EDADITLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFE 566

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSN 269
            E + L++ I K+      +      L   ++    I     ++       +  +   ++
Sbjct: 567 IEIQNLEKKIFKIAKEEF-NIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLEDLAS 625

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  L+LN    S       +TL   +++  +   T     A+ TGR +      QN
Sbjct: 626 QGHEFPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQN 685

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                           +    +RS  ++    KL+ AD + IE R+L
Sbjct: 686 IP------------------------IKNIEGKEIRSAFVSDKNSKLISADYSQIEMRIL 721

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A +       KAF N EDI+  T ++ F+  + KV ++ R   K +   + Y        
Sbjct: 722 AHMGDVKELKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYG-----IS 776

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           +      + +          S F  + +             +      L    C      
Sbjct: 777 SYGLAKQISVSNSEAENFLKSYFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCH----- 831

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +      L                                          RL 
Sbjct: 832 ----FPNINDKNHTLRTFQERACINAPIQGTAADL---------------------LRLA 866

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
              +    S      S               ++Q                        VH
Sbjct: 867 MIQIDKKISAKEIPASL--------------LIQ------------------------VH 888

Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           DE++ E  +    SV   +   M     P     +PL  +    K +
Sbjct: 889 DELLLECKEKDVSSVQQKIAHEMENASEPLVKFSIPLTVDVKSGKNW 935


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 99/687 (14%), Positives = 200/687 (29%), Gaps = 134/687 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57
            +   D ET    PL           A I + ++A ++         +       +   L
Sbjct: 366 KQFAFDTETDGLNPLT----------ASIVVASFAPEEGEAYYLPLPQDFDEACAILQPL 415

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
              +R+  ++ +A N+ F++ L  +  G+   +     T V           +L      
Sbjct: 416 DALMRNSEILKMAQNAKFDQKLLARY-GVS-SATPLFDTLVAHYLIAPDQRHNLDTLAEQ 473

Query: 115 ALNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L +         E K    R          Y    A+ V+       Y     +  +E 
Sbjct: 474 YLGYRTIAYSDLSEKKNFDLRRDVAEELLVDYAAEDADVVR-----RLYPLLREKLEQEQ 528

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  + + +   G ++D+  + ++ E +  + ++ ++ I     G   
Sbjct: 529 QEKLF--WEVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIF-HWAGHSF 585

Query: 234 SSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      + + LF   G+          +  T + +LS           IL+        
Sbjct: 586 NVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKILDYRGLKKLI 645

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                 L E V  DGRLR +      + TGR S      QN+P                 
Sbjct: 646 GTYTEALPELVYPDGRLRTSYNQAV-TVTGRLSSSDPNLQNIP----------------- 687

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +RS  +   +    + AD + IE R++A  + ++  IKAF  GED
Sbjct: 688 -------IRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGED 740

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++ +T A+ +N   ++V+  QR+  K     + Y               L++     +  
Sbjct: 741 VHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYG-----ISAYGLSQRLNIDPSEASSL 795

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
            +S FE++    ++      +  +    + L+G          R     +      + + 
Sbjct: 796 ISSYFENYPAVRAYMDECVQKARKLGYTETLLGR---------RRYLPDINSRSATVRQF 846

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                  ++    +       N      
Sbjct: 847 AERNAVNAPIQGTAADLI---------------------KVAMIRIDAKMRERN------ 879

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                                 +   M           + VHDE+  +        +  L
Sbjct: 880 ----------------------MKSRMI----------MQVHDELNFDAYLPEVDELRAL 907

Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               M +       +PL+ E      +
Sbjct: 908 VHQEMCQAIP-NLRVPLEVEIGVGSSW 933


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 106/697 (15%), Positives = 190/697 (27%), Gaps = 154/697 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPS--DL 57
             D ET S  PL           A +   + A  +     +             P     
Sbjct: 370 AYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 419

Query: 58  LQY------LRDETVMCVAHNSLFERIL-FKKTLGIDIPSKRWICTSVLARTNGL---PS 107
                    L D  +  + HN  F+        L   I       T + A          
Sbjct: 420 KDAQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 478

Query: 108 SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +       L       K    K           ++ PY    A+       F  Y K  
Sbjct: 479 GMDKLAESILGVKTIRFKDLV-KTGQNFSDIPLNEACPYAAEDAD-----ITFRFYKKFL 532

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +   ++L    D E  +  L   +  +G  +  + +    + + +E +  ++DI +
Sbjct: 533 PLLKKNNLEKLF--FDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYR 590

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L+  LF    +     ++    T  S+L +          IL+  A
Sbjct: 591 LVGHEF-NIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKILDYRA 649

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            +       +TL +    +GR+  +    G + TGR S      QN+P            
Sbjct: 650 LAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIP------------ 696

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G     +R    A  G+ L+ AD + IE  +LA ++ +   ++AF 
Sbjct: 697 ------------IRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFN 744

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D++  T +  F   I  VS++ R I K +                    G+      
Sbjct: 745 KGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINF--------------GVMYGMS----- 785

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A   ++     +   KA+ A + GV      
Sbjct: 786 -------------------------AFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           + +           +                           RR     +          
Sbjct: 821 VCQEAEQRGYVETLM--------------------------GRRRYLPAINSKNKVEKAG 854

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
             ++              +Q  + DI+   M    K          I+L VHDE++ E  
Sbjct: 855 AERI---------AVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAA 905

Query: 638 DTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           ++    V +L    M         +PL+        +
Sbjct: 906 ESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSW 940


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 93/705 (13%), Positives = 183/705 (25%), Gaps = 170/705 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
               D +T S  P+          QA +   + A                          
Sbjct: 380 YFSFDTKTISLDPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEENLLGGGRI 429

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103
                     + L   L ++ V+ +  N  ++ ++ K+    +I    +  T +L+    
Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQY---NIVMCSFDDTMLLSYALE 486

Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                  +       L       K                         +      +   
Sbjct: 487 AGISTHGMDVLSKRWLGHKPISYKDLTHSG---------------RKIVSFAQVDLKQAT 531

Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            Y   D + T  L++ L P              +R L  +   + +RG  +D  ++ +L 
Sbjct: 532 LYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLS 591

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILS 266
             +AQ    L+E+I +L      +      L   LF   G+            T    L 
Sbjct: 592 GELAQAALNLEEEIYQLVGEKF-NIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTLE 650

Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
                   L + +I  R   +       + L   +    GR+         + TGR S  
Sbjct: 651 ELAAEGHILPRKIIDWRQ-LTKLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSS 708

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +AS G  L+ AD + 
Sbjct: 709 EPNLQNIP------------------------VRTAEGRKIRKAFVASKGYLLLSADYSQ 744

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA +A      +AF  G+DI+  T ++ F   ++ ++ E R   K +   + Y  
Sbjct: 745 IELRILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGI 804

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +   +      FE +   E +    +         + + G   
Sbjct: 805 SP-----FGLASQLGISRKEASDYIQLYFERFPGIEDYMERTKIFARHHGYVETIFGRRI 859

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                     +  +      +               +                       
Sbjct: 860 H---------YPEIKTAKSQIRAFNERAAINAPIQGSA---------------------- 888

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                           +    + L +ER                    + +         
Sbjct: 889 ---------ADIIRRAMIQMENALEKERLSA-----------------KMLLQVHD---- 918

Query: 624 IVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKA 665
                  E++ E P +    +   +  +M     P+ +  +PL+ 
Sbjct: 919 -------ELIFEVPKSESTKTAILIKKVMENATMPALSLSVPLEV 956


>gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 108/703 (15%), Positives = 200/703 (28%), Gaps = 144/703 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSD 56
           +S +  D ET     L           A I   +   D++        E +     + S 
Sbjct: 356 ISVVAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSP 405

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L   ++DE V+ VAHN+ F+  +  +  G+   +     T +           SL     
Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLTRY-GLP-EAHPLYDTMLAHYLIDADQGHSLDELAG 463

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L +     K                   P +          +L  +Y   D   T  L
Sbjct: 464 GLLRYDTIRYKDLA----------------PQESFALRTDVDPKLLCDYASEDAYVTLRL 507

Query: 174 FKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  L             + E  L  +   +  RG  +D++ + + ++ + +   +L+++I
Sbjct: 508 YHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEI 567

Query: 225 VKLT-DGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
              +  G+         +   LF    I +    ++     T +  L           LI
Sbjct: 568 QSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALI 627

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L+   +       ++ L +    DG+L  +      + TGR S      QN+P +     
Sbjct: 628 LDYREARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGR 686

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            L +   A                          G  L+ AD + +E RV+A ++ +   
Sbjct: 687 PLRRAFVADPYYTPRLSACTPVDHTHEE----PIGAVLLSADYSQVELRVMAHLSQDPAM 742

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I +F +G+DI+  T AK F    ++V+   R+  K     +              + G+ 
Sbjct: 743 IHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGIT 788

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               SQ                                 +       + K + A    + 
Sbjct: 789 PYGLSQR------------------------------LNIPVGEAAELIKEYFATFTHIQ 818

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +             +   RR                              ++   +
Sbjct: 819 AFMNEAIALATERGYTETAFGRRR-----------------------------QLRNLRT 849

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEI 632
                     R            +Q  + DI+   M    +          +VL VHDE+
Sbjct: 850 ARGAQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDEL 903

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRY 673
           V          V  L    M     W +  +PL  E    K +
Sbjct: 904 VLNVYLDELDRVTALVREAMEGA--WPECSVPLVVEIGTGKDW 944


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 110/683 (16%), Positives = 189/683 (27%), Gaps = 141/683 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-------- 56
             D ET    PL             +   + +              +    +        
Sbjct: 376 AFDCETTGLNPLYDS----------LVGFSLSLKAGTGIYVPLKAPAPELGEQPFAVMPL 425

Query: 57  --LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPS 107
               + L     ++ +  V HN  F+  + +          R   T + A       L  
Sbjct: 426 AAAKKLLARLWNNKELTLVLHNGKFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSF 485

Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            L+N   A L       K    K                  T      A      Y    
Sbjct: 486 GLENLTEAQLGLQGLDYKDVVPKGC------TFAAVSLPQATAYAAEDADFTLQLYHVYK 539

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +     L      E  L  L   +  +G  +  + +    E +A    + + +I K
Sbjct: 540 PALEQANLTTLFETL--EMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLARDEAEIYK 597

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L+  LF    +     ++    T  S+L            IL+  A
Sbjct: 598 LVGHPF-NIASPKQLQEVLFTERKLPTGKKTKTGYSTDISVLEELAAIDELPAKILDYRA 656

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S+       + L     ++GR+  +    G + TGR S      QN+P            
Sbjct: 657 SAKLKSGYADALPLLADANGRIHTSFIQTG-TATGRLSSRDPNLQNIP------------ 703

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G     +R    A++G KL+ AD A IE  +LA  + ++  +KAF 
Sbjct: 704 ------------IRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFR 751

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D++  T A  FN P++ V  + R I KV+   + Y   A           L + +  
Sbjct: 752 QGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLAN-----QLRISRTE 806

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                T  F  +    +    +++   E    + L+G          R   + +    + 
Sbjct: 807 AADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGR---------RRYIRAINSRNQT 857

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                  +        +                                     + +   
Sbjct: 858 QRAAAERIAINTPIQGSA-------------------------------ADIVKTAMLHV 886

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
              L R             Q +S                 ++L VHDE++ E PD+   S
Sbjct: 887 DRALKR-------------QHLSA---------------HLLLQVHDELILEAPDSEVDS 918

Query: 644 VGT-LCSLMTKNPSWAKGLPLKA 665
           V   L   M      A  +PL+ 
Sbjct: 919 VKALLKQEMEHVVKLA--VPLRV 939


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 107/699 (15%), Positives = 187/699 (26%), Gaps = 156/699 (22%)

Query: 16   LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPS 55
            L  V       QA +T  A A             +                         
Sbjct: 440  LEAVATSIDPMQAELTGVALALGPNDACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDALD 499

Query: 56   DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
             L   L    +  V     F  +L  +     +  +      +++           L   
Sbjct: 500  ALKPVLESAGIAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSHGLDAL 556

Query: 113  CLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168
              + L  + H      G  K  I     G   +  Y   RA+  ++  ++          
Sbjct: 557  SESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERADVSLRLARVLKPRLVAGSM 616

Query: 169  ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +I +L 
Sbjct: 617  T--AVYETL------ERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELA 668

Query: 229  DGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLA 283
             G   +      L   LF   G+     ++     T   +L             IL    
Sbjct: 669  -GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKKILEWRQ 727

Query: 284  SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
             S       + L   V        T     A+ TGR S      QN+P            
Sbjct: 728  VSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP------------ 775

Query: 344  IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +R   +A+ G KLV AD + IE R+L+ +A      KAF 
Sbjct: 776  ------------VRTEDGRKIRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQ 823

Query: 404  NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            +G DI+  T ++ F  P++ +  E R   K +                    G+      
Sbjct: 824  DGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS----- 864

Query: 464  QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                         A +  +         K +  +  G+     +
Sbjct: 865  -------------------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDE 899

Query: 524  LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
              +                                       R+  Y D+K     +   
Sbjct: 900  TRDFCRAHGYVTTLF--------------------------GRKCHYPDIKASNPSIRAF 933

Query: 584  TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETP 637
                 R             Q  + DI+   M          K    ++L VHDE++ E P
Sbjct: 934  ---NERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVP 984

Query: 638  DTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            +    +   +   +M     P+    +PL+ +   A  +
Sbjct: 985  EAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1023


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 193/689 (28%), Gaps = 156/689 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQSA--------------------MPSDLLQYLRDET 65
             QA +   A +             +                      +   L   L    
Sbjct: 455  MQAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGARDVLDALRPLLDSAG 514

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121
            +  +  N  F   +     G+ +         +++           L     + L  + H
Sbjct: 515  LAKIGFNIKF-TAVLLAQHGVTLR--NIDDVQLISYVLDAGRGSHGLDALSESNLGHTLH 571

Query: 122  LTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLI 178
            +     G  KA IA        +  Y   R++  ++ W++         E    +++ L 
Sbjct: 572  VLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLV--AERMMAVYETL- 628

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 ER L  +   +  RG  ID  ++ +L    AQ   +++ +I +L  G   +    
Sbjct: 629  -----ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELA-GEDINIGSP 682

Query: 239  YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293
              L   LF   G+     ++     T   +L             IL+    S       +
Sbjct: 683  KQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTD 742

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L   V    +   T     A+ TGR S      QN+P                      
Sbjct: 743  ALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 780

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R   +A+ G +LV AD + IE R+L+ +A      KAF +G DI+  T 
Sbjct: 781  --VRTEDGRKIRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTA 838

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            ++ F  P++ +  + R   K +                    G+                
Sbjct: 839  SEMFGVPVEGMPSDIRRRAKAINF--------------GIIYGIS--------------- 869

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                               A +  +         K +  +  G+     +  +       
Sbjct: 870  ---------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGY 914

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                      +     R+  Y D+K     +        R    
Sbjct: 915  --------------------------VETLFGRKCHYPDIKASNPSIRAF---NERAAIN 945

Query: 594  GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPY-FSVGT 646
                     Q  + DI+   M          K    ++L VHDE++ E P+     ++  
Sbjct: 946  ARL------QGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDELIFEVPEDEVTATLPV 999

Query: 647  LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            +  +M     P+    +PL+ +   A  +
Sbjct: 1000 VSHVMQDAPFPAVILNVPLQVDARAADNW 1028


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/683 (14%), Positives = 189/683 (27%), Gaps = 156/683 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTE--------------------QSAMPSDLLQYLRDETVMCV 69
           +   A A +                                 A  + L   L D+++M V
Sbjct: 364 LVGLALAVEPGQAGYLPLRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKV 423

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLAL-NFSEHLTKM 125
           A ++     L  +     I       T +L+          +L      L        K 
Sbjct: 424 AQDAKAAMKLLGRH---GIALAPVDDTHLLSYALNSGLHGHTLDTLSDRLLGHRPIELKS 480

Query: 126 E--EGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
               GK+             PY    A+  ++ WQ   +   R       +++ L     
Sbjct: 481 VVGTGKSARTFDRVPVEAVTPYAAEEADIVLRLWQALKQQLFRKQVT--RVYETL----- 533

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            ER L  +   +   G R+D D + ++    +Q+   L+ ++ +L      +      L 
Sbjct: 534 -ERPLIPVLAGMERAGIRVDRDTLSRMSNAFSQKMAGLEAEVYELAGREF-NLGSPKQLG 591

Query: 243 MYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
             LF   G+      +     T   +L            IL+    S       ++L   
Sbjct: 592 EILFDELGLPGGKKGKTGAYGTGADVLEDLATEHDLPGRILDWRQISKLKSTYTDSLQGY 651

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +     R+  +    GA  TGR +      QN+P                          
Sbjct: 652 IQPETSRVHTSYSQAGA-ATGRLASTEPNLQNIP------------------------VR 686

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +A  GK LV  D + IE R+LA +AG D   +AF +G+DI+  T ++ F
Sbjct: 687 TEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAATASEMF 746

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           N P+++++ + R   K +                    G+                    
Sbjct: 747 NVPLEEMTPDVRRQAKAINF--------------GVIYGISGF----------------- 775

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                          A   ++     +     +  +  G+     +              
Sbjct: 776 -------------GLARSLRIPREEAQGFINRYFERFPGIRDYMDETVAFAKEHG----- 817

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                 +     R++       + +          R        
Sbjct: 818 ---------------------FVQTLFGRKIHTP----EINAKGPGAGFARRAAINAP-- 850

Query: 598 TENIVQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652
               +Q  + D++   M             ++L VHDE++ E  +    + V     +M 
Sbjct: 851 ----IQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELLFEVEEGAVEALVAAAREVME 906

Query: 653 KN--PSWAKGLPLKAEGYEAKRY 673
               P     +PL  +  +   +
Sbjct: 907 AAAMPVVQFTVPLVVDAGQGTNW 929


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 201/699 (28%), Gaps = 160/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59
             +D ET S              +A +   +++ +          E         + L  
Sbjct: 379 FSVDTETTSLDTF----------EAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKP 428

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALN 117
            L +  +     N  ++ ++ K   G+++    +  T + +         +L +   AL+
Sbjct: 429 LLENPEIGKTGQNLKYDILVLKNY-GVELQPVEF-DTMLASYVLDPESRHNLDDMA-ALH 485

Query: 118 FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            S    K +E    GK+ I  F                     Q   +Y  +D + T +L
Sbjct: 486 LSRQTVKYDELVGTGKSAIGIFEVEP-----------------QKLSDYACQDADITLKL 528

Query: 174 FKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              L    +            E  L  +   +  +G  ID + + KL   + +E   L E
Sbjct: 529 RGELAAKLEATPELLEVCRTLEFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTE 588

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I +   G   +      L   LF +  +     ++    T   +L    +       +L
Sbjct: 589 RIHEAA-GETFNIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVL 647

Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
              +        +  L + + +  GRL  +      + TGR S      QN+P       
Sbjct: 648 EYRSLQKLKGTYIEALPKLLHAATGRLHTSFNQS-ITATGRLSSSNPNLQNIP------- 699

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I S     L+ AD + IE RV A ++G+  
Sbjct: 700 -----------------IRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPM 742

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF N EDI+  T    F+T  D+V+ + R   K +   + Y       +       L
Sbjct: 743 LIEAFRNHEDIHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYG-----IQPFGLSQRL 795

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + Q        +    +    S      ++  +      L+G          R     +
Sbjct: 796 GIPQKEAKEIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGR---------RRYVPDL 846

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                ++ +    V                                              
Sbjct: 847 NSPNGNIRKAAERVTMNTPIQGTAADIIKY------------------------------ 876

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
             + T + +L  ER        +++           +               DE++ ETP
Sbjct: 877 -AMCTISRRLKEER------LNSVM-----------LLQVH-----------DELLFETP 907

Query: 638 DTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAKRY 673
                 +  L    M    S    + +P++ E    K +
Sbjct: 908 ADEQSRLTELVEKCMVDAASKCGVRNVPVEVETGVGKNW 946


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/690 (14%), Positives = 191/690 (27%), Gaps = 151/690 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDL 57
           +  D ET +            A  A I   ++A ++                  +   + 
Sbjct: 323 VAFDTETNALD----------AYNAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEA 372

Query: 58  LQYLRDETVMCV-AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACL 114
            + L+      +   N  ++  + +   G+ +    +  T ++A      S+  L     
Sbjct: 373 KEALKKLFKHKIVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDTLAK 431

Query: 115 AL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              N      K    K       +     P           AW     Y K        L
Sbjct: 432 RFFNHDMVKFKDVVSKN------ENFSHVPLDKACEYASEDAWMTLKLYNKLHDMLEPRL 485

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              L    + E    L    +   G +ID      L +        L  +I  L D    
Sbjct: 486 ---LEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHEIFTLCDAQF- 541

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +   T  L   LF   G+  V  ++    T +++L+       +   IL           
Sbjct: 542 NLNSTQQLGTVLFEQLGLPPVKKTKTGYSTDENVLNELLDKHPSIAKILEYRELYKLRST 601

Query: 291 KLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
            +  L +    S  GR+  +    G + TGR S      QN+P                 
Sbjct: 602 YIEPLLKLSKESPLGRVHTSFIQTG-TSTGRLSSKDPNLQNIP----------------- 643

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          VR   +A  G  L+  D + IE R+LA  + ++  +KAF +G+DI
Sbjct: 644 -------VKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDI 696

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T  K F    ++ +  +R++ K +   L Y  G                        
Sbjct: 697 HYETALKLFG---EQEAASKRSVAKSINFGLLYGMGP----------------------- 730

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   +    +     +   +++ A    +     ++ E  
Sbjct: 731 ---------------------KRLSETLGISMAEAKRYIESYFATFPTIKAYVMEVAEQA 769

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                    +  +R  +       ++   +                              
Sbjct: 770 KTTGYVETLLGRKRFFDFEHANAMQYAGYLR----------------------------- 800

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
                  +    + Q  + D++   M             ++L +HDE++ E  ++   S 
Sbjct: 801 -------EAVNTVFQGSAADLIKLSMNKIMATLIHDEAKLLLQIHDELIFEVVESQAQSF 853

Query: 645 G-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +M +   +A  +PLK      K +
Sbjct: 854 ALEAQKVMEEI--YALRIPLKVSIAMGKNW 881


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 197/700 (28%), Gaps = 154/700 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP--------S 55
           L ID ET S           +A    +   + AW                P         
Sbjct: 397 LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 446

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            L   L    +  V HN  F+ I+  ++ G+ +       T V             L + 
Sbjct: 447 TLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDDL 504

Query: 113 C-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L+ +    K     GK  I        D  P                 Y   DV+ 
Sbjct: 505 AQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSP-----------------YACEDVDV 547

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
              L   L              + E  L  +   +   G  ++ D + K+ E   ++   
Sbjct: 548 PIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIAD 607

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276
           L   +         +      L + LF   G+ ++  ++    T   +LS   +     +
Sbjct: 608 LRALVFSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAE 666

Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L    ++      ++ L + +    GR+  + +   A  TGR S      QN+P    
Sbjct: 667 HVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVA-ATGRLSSSEPNLQNIP---- 721

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394
                                       +R+   A   G  L+ AD + IE RVLA  +G
Sbjct: 722 --------------------IRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 761

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  I A+ +  DI+    A+       +V+ + R I K +   + Y             
Sbjct: 762 DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLA 816

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L +            F+ +   E+  +    +         ++G   E+         
Sbjct: 817 KTLGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREI--------- 867

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                  K + +                                   LP S+R   ++ +
Sbjct: 868 -------KGVRDLAK--------------------------------LPESKRRSLTEPE 888

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                +    +     +    ++ E + Q    D+    +                 ++ 
Sbjct: 889 RIAINMPIQGTAADLIKLAMLRVHEQLKQ---SDLQARLLLQIHDE-----------LLL 934

Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+PD    ++   +   MT        +PLK +    + +
Sbjct: 935 ESPDEELDALSDMIREAMTSVME--LDVPLKVDVAHGRTW 972


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 102/699 (14%), Positives = 192/699 (27%), Gaps = 158/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
           + +D ET S   +          QA +   + A             +            +
Sbjct: 375 VALDTETTSLDEM----------QASLVGISMALAPGVACYIPLAHRGPDSAEQLPKREV 424

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111
              +  +L+D     + H++ ++  +F    G+ +   +   T + A          L +
Sbjct: 425 LERMRAWLQDPARPKLLHHAKYDAHVFAN-EGVALAGIQ-DDTMLQAYVLESHRGVGLND 482

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +   GK                         A +  G Y   D + T
Sbjct: 483 LAQRYLGRGGITYEELCGKGAKQIG---------------FDEVAVEQAGHYACEDADFT 527

Query: 171 RELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L   L P              E  +  +   +   G ++D   + +    + QE  +L
Sbjct: 528 LQLHHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQL 587

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF    + +V  +      T + +L+          
Sbjct: 588 EQRAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRLAQDYPLPQ 646

Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 647 VLLEYRGLSKLKSTYTDKLPRMINARTGRVHTHYSQA-AVVTGRLASSDPNLQNIP---- 701

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   +A +G  LV AD + IE R++A ++ +
Sbjct: 702 --------------------VRTEAGRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDD 740

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AFA G+DI+  T ++ F   +D+V  +QR   K +   L Y  G           
Sbjct: 741 ANLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGV-----FGLAS 795

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +        F  +     +    +    +    + + G   +L          
Sbjct: 796 NLGITRDAAQAYIDRYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQL---------P 846

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                       ++    V+ 
Sbjct: 847 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 885

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                  AT                I+Q                    ++L        E
Sbjct: 886 WLDAERLATR--------------MIMQ-------------VHDE---LIL--------E 907

Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD    +V   L  LM         +PL AE      +
Sbjct: 908 VPDGELDAVRARLPELMCGVAR--LRVPLVAEVGVGPNW 944


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 107/700 (15%), Positives = 198/700 (28%), Gaps = 144/700 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET     L           A I   +   D++        E +     + S L  
Sbjct: 359 VAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKD 408

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
            ++DE V+ VAHN+ F+  +  +  G+   +     T +           SL       L
Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRY-GLP-EAHPLYDTMLAHYLIDADQGHSLDELAGGLL 466

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +     K                   P +          +L  +Y   D   T  L+  
Sbjct: 467 RYDTIRYKDLA----------------PQESFALRTDVDPKLLCDYASEDAYVTLRLYHA 510

Query: 177 LIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L             + E  L  +   +  RG  +D++ + + ++ + +   +L+++I   
Sbjct: 511 LHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSY 570

Query: 228 T-DGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
           +  G+         +   LF    I +    ++     T +  L           LIL+ 
Sbjct: 571 SSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALILDY 630

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +       ++ L +    DG+L  +      + TGR S      QN+P +      L 
Sbjct: 631 REARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPLR 689

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           +   A                          G  L+ AD + +E RV+A ++ +   I +
Sbjct: 690 RAFVADPYYTPRLSACTPVDHTHEE----PIGAVLLSADYSQVELRVMAHLSQDPAMIHS 745

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F +G+DI+  T AK F    ++V+   R+  K     +              + G+    
Sbjct: 746 FLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPYG 791

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            SQ +                               +       + K + A    +    
Sbjct: 792 LSQRL------------------------------NIPVGEAAELIKEYFATFTHIQAFM 821

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
                          +   RR                              ++   +   
Sbjct: 822 NKAIALATERGYTETAFGRRR-----------------------------QLRNLRTARG 852

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSE 635
                  R            +Q  + DI+   M    +          +VL VHDE+V  
Sbjct: 853 AQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVLN 906

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRY 673
                   V  L    M     W +  +PL  E    K +
Sbjct: 907 VYLDELDRVTALVREAMEGA--WPECSIPLVVEIGTGKDW 944


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 110/689 (15%), Positives = 189/689 (27%), Gaps = 156/689 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA +   A A             +                          L   L    
Sbjct: 456  MQAELCGIALALAPNDAAYIPLGHRQTGDGSGLFAAGLAPDQLGAREALDALKPLLESAG 515

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121
            +  +  N  F   +     GI +         +++           L     + L  + H
Sbjct: 516  LAKIGFNIKF-TAVLLAQHGITLR--NIDDLQLMSYALDAGRGSHGLDALSESNLGHTLH 572

Query: 122  LTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLI 178
                  G  KA I         +  Y   RA+  ++ W++         E    +++ L 
Sbjct: 573  ALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLV--AERMMAVYETL- 629

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 ER L  +   +  RG  ID  ++ +L    AQ   +++ +I +L  G   +    
Sbjct: 630  -----ERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELA-GEDINIGSP 683

Query: 239  YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293
              L   LF   G+     ++     T   +L             IL+    S       +
Sbjct: 684  KQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTD 743

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L   V    +   T     A+ TGR S      QN+P                      
Sbjct: 744  ALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 781

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R   IAS G KLV AD + IE R+L+ +A      KAF +G DI+  T 
Sbjct: 782  --VRTEDGRKIRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTA 839

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            ++ F  P++ +  E R   K +                    G+                
Sbjct: 840  SEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS--------------- 870

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                               A +  +         K +  +  G+     +  +       
Sbjct: 871  ---------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGY 915

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                      +     R+  Y D+K     +        R    
Sbjct: 916  --------------------------VETLFGRKCHYPDIKASNPSIRAF---NERAAIN 946

Query: 594  GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                     Q  + DI+   M          K    ++L VHDE++ E PD    +   +
Sbjct: 947  ARL------QGSAADIIRRAMGRMEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPV 1000

Query: 648  CS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
               +M     P+    +PL+ +   A  +
Sbjct: 1001 VRHVMQDAPFPAVLLNVPLQVDARAADNW 1029


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 100/693 (14%), Positives = 197/693 (28%), Gaps = 147/693 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56
             + ID ET                   I   ++A         D + ++ +  D     
Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIDKDKCMNL 399

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113
           +   L  E +  + HN  +E  +  + +G  I    +  T V A          ++ +  
Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMM-RAIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L+++          A          D   Y C  A+       F  Y        T 
Sbjct: 458 IAYLSYNTIKYADLTDNAKKTLLDAPLKDVVEYACEDADV-----TFRFYECFAPLLKTH 512

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L      +   E  L  +   +   G  I  + +  L +  +   +K  E I K     
Sbjct: 513 NLEDLFFNI---EMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYKEAGEE 569

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             + +    L   LF   GI     ++    T + +L+  +      + +L     +   
Sbjct: 570 F-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLK 628

Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              L+     ++   GR+  +      + TGR S      QN+P                
Sbjct: 629 NTYLDVFPTLINEKTGRIHASFNQTV-TATGRLSSSEPNLQNIP---------------- 671

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G     +R+  I   G  L+ AD + IE R+LA  + +   ++AF N +D
Sbjct: 672 --------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNNDD 723

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T  K ++   + V+   R I                                    
Sbjct: 724 IHRKTAMKIYSVSKEHVTASMRNIA----------------------------------- 748

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                    +  +  +         + +  +     E   K + + +  V    +++ E 
Sbjct: 749 ---------KIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEEVVEE 799

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                           +     R    S      + +  A ++ 
Sbjct: 800 VRNKG--------------------------FVRTMCGRIRDLSKTINSSNAM--ARNEA 831

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641
            R           ++Q  + D++   M    K          IV+ VHDE+V E  +   
Sbjct: 832 ERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEA 885

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
               T+   +M  +      +P+  + ++   +
Sbjct: 886 DKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSW 916


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/714 (15%), Positives = 190/714 (26%), Gaps = 180/714 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY------------------AWDDEPVKLW 45
           L ID ET S  PL          QA +   +                   A ++      
Sbjct: 317 LVIDTETTSLDPL----------QAELVGISLTLAAPGSDESEAKASRTAAGENGACWYL 366

Query: 46  DRTEQ--------SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
               +        + +P       L   L D+  + + HN  ++  +  +    D+P   
Sbjct: 367 PIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRH---DLPLAP 423

Query: 93  -WICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T + +           L      L              L  R    +  +      
Sbjct: 424 PLADTMIASYLIDPSRRSHGLDVLSEEL--------------LQRRLTSFAEVTDRDRRP 469

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRG 198
            A    A      Y   DV ATR L++   P              E  L  +   +   G
Sbjct: 470 EAFAHVAPAAAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVG 529

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D  ++ +L    +QE ++L   I +L      +      L   LF    +     ++
Sbjct: 530 ILLDGQVLKELAAEFSQELERLSSKIYQLAGVEF-NINSPRQLGEVLFERLKLPHGRKTK 588

Query: 259 -----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
                 T    L            I+ +   S      ++ LS  ++  DGR+  +    
Sbjct: 589 GKTGYSTDIRELERLAAYHDLPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFNQT 648

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                                +R   IA+ 
Sbjct: 649 V-TATGRLSSSNPNLQNIP------------------------VRTQEGRRIRGAFIAAP 683

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G + + AD + I+ RVLA  + +   ++AF   +DI+  T A+ F      V+ + R + 
Sbjct: 684 GHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVA 743

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               L   +    V     FE +   ++    + +Q    
Sbjct: 744 KTINFGIIYGMS-----AFGLAEQLRCSRKEAQVFIDRYFELYRGVKTFMEEIVEQARRD 798

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                L+           R +   +    K   E                          
Sbjct: 799 GFVRTLLKR---------RRQLPEINSSNKLRREFAERTAINTPIQGTAADII------- 842

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                         +L       +    N  T                           E
Sbjct: 843 --------------KLAAIACDRELRRKNFNT---------------------------E 861

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
            +              HDE++ E P+    +VG L    M         +PL+ 
Sbjct: 862 ALLQI-----------HDELIFEVPEDEQAAVGKLVQQAMENVME--LTVPLRV 902


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 200/701 (28%), Gaps = 146/701 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET     L           A I   +   D++        E +     + S L +
Sbjct: 359 VAFDTETDGLDALC----------AGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKE 408

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGL--PSSLKNACL-A 115
            ++DE V+ VAHN+ F+  +  +     +P  R    T +           SL       
Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRY---GLPEARPLYDTMLAHYLIDADQGHSLDELAGGL 465

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +     K                   P +          +L  +Y   D   T  L++
Sbjct: 466 LRYDTIRYKDL----------------SPLEIFALRTDVDPKLLCDYASEDAYVTLRLYQ 509

Query: 176 RLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            L             + E  L  +   +  RG  +D++ + + ++ + +   +L+++I  
Sbjct: 510 ALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQS 569

Query: 227 LT-DGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280
            +  G+         +   LF    I +    ++     T +  L           LIL+
Sbjct: 570 YSSRGLNLKVNSPKQIGELLFDELQIMEKPRKTKTGSYVTNEETLLPLRSLHPVVALILD 629

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +       ++ L +    DG+L  +      + TGR S      QN+P +      L
Sbjct: 630 YREARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPL 688

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            +   A                          G  L+ AD + +E RV+A ++ +   I 
Sbjct: 689 RRAFVADPYYTPRLSACAPVDHTHEK----PIGAVLLSADYSQVELRVMAHLSQDPAMIH 744

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           +F +G+DI+  T AK F    ++V+   R+  K     +              + G+   
Sbjct: 745 SFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPY 790

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             SQ                                 +       + K + A    +   
Sbjct: 791 GLSQR------------------------------LNIPVGEAAELIKEYFATFTHIQAF 820

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +             +   RR                              ++   +  
Sbjct: 821 MNEAIALATERGYTETAFGRRR-----------------------------QLRNLRTAR 851

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVS 634
                   R            +Q  + DI+   M    +          +VL VHDE+V 
Sbjct: 852 GAQRGNAERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVL 905

Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRY 673
                    V  L    M     W +  +PL  E    K +
Sbjct: 906 NVYLDELERVTALVREAMECA--WPECSVPLVVEIGTGKDW 944


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 96/697 (13%), Positives = 177/697 (25%), Gaps = 154/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
               D ET    PL           A +   ++A  +             E   + +   
Sbjct: 368 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPAAREEADKILAHFS 417

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115
             L++   + +  N  F+ ++ +K  GI I       T +            +       
Sbjct: 418 PALQNPKSLKIGQNIKFDILVVRKY-GIRIAG-PLFDTMIAHYLLNPELRHGMDYLAETY 475

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +     +   G              P                 EY   D + T +L  
Sbjct: 476 LKYKTVRIEELIG--------------PRERKQLTMRDVPVVQVAEYAAEDADITLKLKN 521

Query: 176 RLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
              P  + E            L  +   +   G  +D   + +  E +    KKL+++I 
Sbjct: 522 YFTPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIY 581

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +L      +      +   LF    I          S  T + IL            +L 
Sbjct: 582 ELAGMKF-NINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHPVVGKLLE 640

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      ++ L E ++   G++  +      + TGR S      QN+P        
Sbjct: 641 YRGLKKLLSTYIDALPELINPETGKIHTSYNQAV-TSTGRLSSTNPNLQNIP-------- 691

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R    A         AD + IE R++A ++ +   
Sbjct: 692 ----------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHM 735

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G DI+  T AK +  P+++V+ + R   K     + Y               L 
Sbjct: 736 IEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLS 790

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           + +          F+ +    ++     +   E    + +      L           + 
Sbjct: 791 IPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFL---------PDIN 841

Query: 519 QLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                +        +      SA  +  V  + +    R     L S   L   D     
Sbjct: 842 SHNAIVRGYAERNAINAPIQGSAADIIKVAMVRI--FNRFETEGLKSKMILQVHDELNFN 899

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
            Y                                                  DE+     
Sbjct: 900 VYK-------------------------------------------------DEL----- 905

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +    M         +PL A+  E   +
Sbjct: 906 ----EKVKQIVLDEMENAIK--LQVPLIADCGEGVNW 936


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 193/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A + ++     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELRITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 195/700 (27%), Gaps = 164/700 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LL 58
             + ID ET S               A +   + ++ +          +  +  +   ++
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 59  QYLRD---ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113
           Q   +        +  N  F+  + K      IP   +  T + A         SL    
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L       +    K                         + ++   Y   D + T  
Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADITFR 490

Query: 173 LFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           LF               + + E     +   + + G  +D + + +  + + +E + ++ 
Sbjct: 491 LFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIEN 550

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLILN 280
           +I+K       +      +   LF    + L +  +   T   +L        + + ++ 
Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIK 609

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       + L E ++    RL  +      + TGR +      QN+P        
Sbjct: 610 YRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP-------- 660

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R      NG   + AD + IE  +LA ++ ++  I
Sbjct: 661 ----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLI 704

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           KAF N +DI+  T +K F     +++   R I K +                     +  
Sbjct: 705 KAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSD 750

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +                               A +  +     +    ++   +  + +
Sbjct: 751 FRL------------------------------AKELGITKEEAKGFINSYFDSYPKIKE 780

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              +              +  RR                           Y       +Y
Sbjct: 781 FIINQINFVKNAGYSETILKRRR---------------------------YIKEINSNNY 813

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633
           L    S   R          +I+Q  + DI+   M          K    I+L VHDE++
Sbjct: 814 L--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEML 865

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 866 IESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 92/685 (13%), Positives = 182/685 (26%), Gaps = 132/685 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59
           +  D ET   + L          +  +   A++++          E       +  +   
Sbjct: 374 VCFDTETTGLKAL----------EVELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRP 423

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116
           +   E +  V HN  ++  +      + +  K    T +           ++       L
Sbjct: 424 FFESEMIEKVGHNLKYDIKVLSNY-NMPVKGK-LFDTMIAHYLINPDMRHNMDVLAETYL 481

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N+         GK    +        P  D T      A   +        E        
Sbjct: 482 NYHPVSITELIGKKGKNQLSM--RVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTE 539

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L      E  L  +   +   G  +D + + +L   +  +  +L+++I +       +  
Sbjct: 540 LFN--KVELPLVSVLTAMEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQAGEEF-NIA 596

Query: 237 QTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291
               L + LF    + D    ++     T + ILS           I             
Sbjct: 597 SPKQLGIVLFENMKLVDKPKKTKTGQYKTGEDILSFLAKEHKIIRDIQEYRQYKKLQSTY 656

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++ L   ++   GR+        A  TGR S      QN+P                   
Sbjct: 657 VDALPNEINKKTGRIHTQYMQAVA-ATGRLSSNNPNLQNIP------------------- 696

Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        VR   +       L+ AD + IE R++A ++ E+  I AF NGEDI+
Sbjct: 697 -----IRTERGREVRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIH 751

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            +T AK F   I+ V++EQR+  K +   + Y                DL +        
Sbjct: 752 ASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVS-----AFGLSNQTDLSRGEAKELID 806

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
           + +E + + +++     D   E    + ++     L     R            +  G  
Sbjct: 807 TYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNA---------MVRSGAE 857

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                     +                          +L   ++          +     
Sbjct: 858 RNAVNAPIQGSAADII---------------------KLAMINIHNRFIQEGFKSK---- 892

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                                   +                 +V +       ++  +  
Sbjct: 893 -----------------------MLLQVHDE-----------LVFDAHKDELETIKPIIK 918

Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673
             M         +PL  E    + +
Sbjct: 919 NEMENAFK--MTVPLDVEMGIGQNW 941


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 193/702 (27%), Gaps = 163/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLL 58
            ++  D ET             +  +A +    +              +         L 
Sbjct: 314 KEICFDTETT----------HWHPLKAELVGIGFCIKQGAAWYIPMNGKLGLEKALKKLA 363

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-L 114
               +  +   AH+  ++  + K   GI + +  +  T + +          SL      
Sbjct: 364 PLFENSRIGFYAHHLKYDLHILKNY-GISLANISF-DTILASYILTPHLRQHSLDALTLE 421

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               ++  T    GK                           +    YC  DV+ T  L 
Sbjct: 422 HFGKTKIPTSDLIGKGKNQITMLEV---------------PIEKVCAYCCEDVDYTYRLK 466

Query: 175 KRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +         +           L  +   +   G  +D  ++  L++ +  + ++L+ +I
Sbjct: 467 QIFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEI 526

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
             + D    + +    L   LF    I     +     T   +L            +L  
Sbjct: 527 HAIADEPF-NLKSPKQLSGILFEKMKIPPPKKTATGYSTSAEVLETLQNEYAIAKKMLEF 585

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            +        + TL + ++   GR+  T     A  TGR S      Q +P         
Sbjct: 586 RSLEKLRSSYIETLPKEINPKTGRIHPTFNQSVA-ATGRLSCQDPNLQQIP--------- 635

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  VR        G   + AD + IE R+LA  + +   I
Sbjct: 636 ---------------IRTPLGREVRKAFRPEKQGWSYLSADYSQIELRLLAHFSEDPTLI 680

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF N EDI+  T A   N P+++V+KEQR                              
Sbjct: 681 SAFENNEDIHTHTAATVLNIPLEQVTKEQRRQA--------------------------- 713

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            +A +  +    Q    + +  +         K +  ++Q V  
Sbjct: 714 -----------------KAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQRYQRVKD 756

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   E      +    I                           R     ++      
Sbjct: 757 FVESCKEKTRKTGRAMTII--------------------------GRERPIPEIDSKNPQ 790

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIV 633
           +  A  +L              +Q  + D++ + M    +          ++L +HDE++
Sbjct: 791 IRGAAERL---------AVNTPLQGTAADLIKKAMIVIDEKLMRGQHLGFMILQIHDELI 841

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
            E PD    ++  L  S M     +   +PL  +    K ++
Sbjct: 842 FEIPDFEITAIEQLVISSMEGV--YQLRVPLTVDVSIGKNWK 881


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 191/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF                 + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 190/701 (27%), Gaps = 152/701 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSDLL 58
           D+ET     L       +   A +   A A   +                    +   L 
Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LAL 116
            +LR       AH+  ++ ++ ++  G   P   +  T + A   G  +  LK      L
Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERA-GFPRPHIDF-DTMIAAYLLGENAVGLKELAFTKL 440

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +         G+                               +Y   DVEAT  L + 
Sbjct: 441 GWEMEEITELIGRGKKQL---------------TMDRAEIARVTQYACADVEATYRLVEV 485

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P  +           E  L  +   +   G  ID+  + +L  ++  +   L+  I +
Sbjct: 486 LRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYE 545

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L   LF   G+     ++      + +L +   T    + IL    
Sbjct: 546 LAGHPF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ 604

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                   ++ L   V    GR+        A  TGR S      QN+P           
Sbjct: 605 LLKLKSTYVDALPRQVHPQTGRVHTIFHQTVA-ATGRLSSSDPNLQNIP----------- 652

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-------LVVADLAGIEARVLAWIA 393
                          G     VR   IA    G +       L+  D + IE R++A  +
Sbjct: 653 -------------ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFS 699

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AFA G+DI+  T ++ F  P+D V+ E R I KV+   + Y       +    
Sbjct: 700 QDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGL 754

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                + +        + F+ +     +    + +  E    + L G          R  
Sbjct: 755 ARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR---------RRY 805

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +    +                                   +L    V
Sbjct: 806 LPEITSSNPARRQAAERMAVNMPLQGTAADI---------------------MKLAMIAV 844

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
               +     +                             +                 +V
Sbjct: 845 HRALAERGLRSR---------------------------MLLQVHDE-----------LV 866

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P++   +   L  + M++       +PL+ +      +
Sbjct: 867 LEVPESELATTTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 191/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGCYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF                 + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 101/691 (14%), Positives = 189/691 (27%), Gaps = 148/691 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDL 57
           +  D ET S +             A +   +++ + E                 +   + 
Sbjct: 331 VAFDTETDSLE----------TRSAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEEA 380

Query: 58  LQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN-AC 113
              +    +   V HN  F+  +    LG   P  R   + +LA      +   L     
Sbjct: 381 RGAIEKIFSAQVVGHNLKFDLEILHGALGFY-PKGRIGDSMILAWLLDSGAPVGLDFQMK 439

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                     +    K       +        +        A   +  Y + + E  +  
Sbjct: 440 RWFGHEMIPFEKMVKKG------ETFAQVALEEAAEYAGEDALATYRLYFRLEEELKKRG 493

Query: 174 FKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            + L+ L++  E         + +RG R+D +   +L   +    ++L  ++     G  
Sbjct: 494 CESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHAGGEF 553

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   T  L   LF    +     ++    T + +LS         + IL          
Sbjct: 554 -NLNSTQQLGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYRELFKLKS 612

Query: 290 LKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +  L+     D   R    F +  + TGR S      QN+P                 
Sbjct: 613 TYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNPNLQNIP----------------- 655

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                      A   +R   IAS G  L+  D + IE R+LA  + +   + AF  G DI
Sbjct: 656 -------VKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADI 708

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T  K F    ++ +K  R I K +   L Y  G+                       
Sbjct: 709 HYETAKKIFG---EREAKAHRGIAKTINFGLIYGMGS----------------------- 742

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                 + +   ++     +    ++ A    V    K   E  
Sbjct: 743 ---------------------RKLSETLRISPKEAKGYIDSYFASFPTVKSFLKAQEEFA 781

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                    +  RR     +    +                                   
Sbjct: 782 LEHGYTETLLGRRRYFEFQQAPEYQK---------------------------------- 807

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSETPDTPYFS 643
               Y  +    I Q  + D++   M    +         ++L VHDE++ E P     +
Sbjct: 808 --AAYLREAVNCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDELIFEAPKEHAEA 865

Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   L  +M         +PL+      + +
Sbjct: 866 LARELALVMEGIHP--LRVPLQCGISLGEHW 894


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 106/704 (15%), Positives = 187/704 (26%), Gaps = 156/704 (22%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------------- 51
                 L  V       QA +   A A             +                    
Sbjct: 433  TGIVALETVATSIDPMQAELIGLALALGPNDACYIPLLHKQSGDGDGLFAAGLAPDQIGP 492

Query: 52   -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PS 107
                  L   L    V  V     F  +L  +     +  +      +++          
Sbjct: 493  RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549

Query: 108  SLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYC 163
            +L     + L  + H      G  K  I         +  Y   RA+  ++  ++     
Sbjct: 550  ALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRL 609

Query: 164  KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                     +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +
Sbjct: 610  VAGSMT--AVYETL------ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAE 661

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLI 278
            I +L  G   +      L   LF   G+     ++     T   +L             I
Sbjct: 662  IRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKI 720

Query: 279  LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
            L+    S       + L   V        T     A+ TGR S      QN+P       
Sbjct: 721  LDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP------- 773

Query: 339  ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                     +R   +A+ G KLV AD + IE R+L+ +A     
Sbjct: 774  -----------------VRTEDGRKIRRAFVATPGNKLVSADYSQIELRLLSEVADVPAL 816

Query: 399  IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
             KAF +G DI+  T ++ F  P++ +  E R   K +                    G+ 
Sbjct: 817  RKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS 862

Query: 459  LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                              A +  +         K +  +  G+ 
Sbjct: 863  ------------------------------AFGLANQLSIPREEAGAYIKRYFERFPGIR 892

Query: 519  QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +  +                                       R+  Y D+K    
Sbjct: 893  AYMDETRDFCRNHGYVTTLF--------------------------GRKCHYPDIKASNP 926

Query: 579  YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632
             +        R             Q  + DI+   M          K    ++L VHDE+
Sbjct: 927  SIRAF---NERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDEL 977

Query: 633  VSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
            + E P+    +   +   +M     P+    +PL+ +   A  +
Sbjct: 978  IFEVPEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDARAADNW 1021


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 193/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEI 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A + ++     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELRITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 98/702 (13%), Positives = 194/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 322 KYISIDTETSSLD----------IYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 371

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 372 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDF 427

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 428 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 469

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF                 + E     +   + + G  +D + + +  + + QE + +
Sbjct: 470 FRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELI 529

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K   GI  +      +   LF    + L +  +   T   +L        + + I
Sbjct: 530 ENEIIKSI-GINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENI 588

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 589 IKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 641

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 642 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEA 683

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++ + R I K +                     +
Sbjct: 684 LIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRM 729

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 730 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 759

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 760 KEFITNQINFVRNTGYSETILKRRR---------------------------YIKEINSN 792

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 793 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDE 844

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 845 MLIESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSW 885


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 193/677 (28%), Gaps = 137/677 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57
            +DIET S   +                 + A   +               +  A+   L
Sbjct: 344 ALDIETDSLDAMLANP----------VGFSLAVSPKQAAYLPLIAEGQRKFDDDAVRERL 393

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL 114
           ++     +V  + HN  ++  + ++   +         T V A           +     
Sbjct: 394 VRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLA--FDTMVAAWLLDTTANSYGMDPLAA 451

Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L +     K    K  +        D      TR     A   F  Y     +     
Sbjct: 452 SLLGYKTISFKDVVPKDGL------FQDISVETATRYAAEDADITFRFYELFRRQLKERG 505

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G  +  D +      + ++   +++DI +   G   
Sbjct: 506 LEKLF--FELEMPLVPILAEMECAGITLLSDRLEAYGRELEKDLGTIEDDIWQAC-GHSF 562

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +   T  L+  LF    +  +  ++    T  S+L       +   L+L   + +     
Sbjct: 563 NINSTKQLQQVLFEERKLTPIKKTKTGYSTDISVLEELAREDVVPLLVLRHRSLAKLKST 622

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L + V+   GR+   L   G + TGR S      QN+P                  
Sbjct: 623 YVDALPKLVNPETGRIHTQLIQTG-TATGRLSSKDPNLQNIP------------------ 663

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +RS  + + G   + AD + IE  VLA ++ +    +AF +G D++
Sbjct: 664 ------IRDEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRSGGDVH 717

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T +  F+     VS EQR I K +   + Y               L + +   +   +
Sbjct: 718 RRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMS-----AFRLSRELGISRSRADSFIS 772

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
           + F  + + +S    +  +  +  V   L+G                +    K    G  
Sbjct: 773 AYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRE---------RSIPAINSRNKTEKAGAE 823

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            +                             +L  SRR+   ++K               
Sbjct: 824 RIAVNTPIQGTAADIVKL------------AMLAVSRRMASEELKSK------------- 858

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLC 648
                                   M           L +HDE++ E P      +   L 
Sbjct: 859 ------------------------MV----------LQIHDELLFEVPFDEADRMEGLLK 884

Query: 649 SLMTKNPSWAKGLPLKA 665
             M         +PL+ 
Sbjct: 885 EEMESAVK--LSVPLRV 899


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 98/702 (13%), Positives = 194/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLD----------IYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF                 + E     +   + + G  +D + + +  + + QE + +
Sbjct: 489 FRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K   GI  +      +   LF    + L +  +   T   +L        + + I
Sbjct: 549 ENEIIKSI-GINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENI 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEA 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++ + R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFITNQINFVRNTGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 97/696 (13%), Positives = 199/696 (28%), Gaps = 151/696 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQ-- 59
            +  D ET             Y +   +   +++++D+             +P  + +  
Sbjct: 336 IVAFDTETTGLD---------YEKD-KLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKD 385

Query: 60  -YLRDETV---MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113
             L  + +     V HN  F+     + L  D+    +  + +LA          L    
Sbjct: 386 AALAMKKIFNSKVVGHNIKFDLHFVSRFLNDDM-LNIYSDSMILAWLINPESALGLDKLS 444

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L+ +    K    K       +        D ++     A+     +   + +   +
Sbjct: 445 DKLLDHTMLGFKDTVKKG------ETFASVELEDASKYAAEDAYITLKLFNLFNEKLKLQ 498

Query: 173 LFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
               LI  S   E         +   G R+D + +      + +    L + I +     
Sbjct: 499 DATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTIYEQAGTE 558

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +   T  L + LF   G+ +   ++    T +++LS           +L         
Sbjct: 559 F-NINSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEYREIYKLY 617

Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
              +  L +    D  GR+  +    G + TGR S      QN+P               
Sbjct: 618 STYIEPLLKLSLEDKEGRIHTSFVQTG-TATGRLSSKNPNLQNIP--------------- 661

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  GKKL+  D + IE R+LA  + +   + AF   +
Sbjct: 662 ---------ARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANK 712

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI++ T    F    ++ +  +RA+ K +   L Y  G                      
Sbjct: 713 DIHLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQ--------------------- 748

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                   + +    +     + + + +      V   ++ + +
Sbjct: 749 -----------------------KKLSETLGITTKEAKEIIEKYFESFPTVKTYFRSIVD 785

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
               +      +  RR                                    Y +  T+ 
Sbjct: 786 NSKEMGYVETLLKRRR------------------------------------YFDYETAS 809

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP 640
            M    Y  +   ++ Q  + D++   M          K    ++L +HDE++ E     
Sbjct: 810 PMFRAAYDRESVNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADE 869

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              +G     +M         +PL+A       + K
Sbjct: 870 AEMLGNRFKEIMENIYE--LNIPLEASMNIGDNWGK 903


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 100/693 (14%), Positives = 196/693 (28%), Gaps = 147/693 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56
             + ID ET                   I   ++A         D + ++ +  D     
Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIGKDKCMNL 399

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113
           +   L  E +  + HN  +E  + K  +G  I    +  T V A          ++ +  
Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMMK-AIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L+++          A          D   Y C  A+       F  Y        T 
Sbjct: 458 IAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADV-----TFRFYECFAPLLKTH 512

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L +    +   E  L  +   +   G  I  + +  L +  +   +K  E I       
Sbjct: 513 NLEELFFNI---EMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEE 569

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             + +    L   LF   GI     ++    T + +L+  +      + +L     +   
Sbjct: 570 F-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLK 628

Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              L+     ++   GR+  +      + TGR S      QN+P                
Sbjct: 629 NTYLDVFPTLINEKTGRIHASFNQTV-TATGRLSSSEPNLQNIP---------------- 671

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G     +R+  I   G  L+ AD + IE R+LA  + +   ++AF N +D
Sbjct: 672 --------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDD 723

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T  K ++   + V+   R I                                    
Sbjct: 724 IHRKTAMKIYSVSKEHVTASMRNIA----------------------------------- 748

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                    +  +  +         + +  +     E   K + + +  V     ++ E 
Sbjct: 749 ---------KIINFSIIYGKTAFGLSKELGIKKKEAEDFIKGYSSTYSRVKPFCDEVVEE 799

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                           +     R    S      + +  A ++ 
Sbjct: 800 VRNKG--------------------------FVRTMCGRIRDLSKTINSSNAM--ARNEA 831

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641
            R           ++Q  + D++   M    K          IV+ VHDE+V E  +   
Sbjct: 832 ERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEA 885

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
               T+   +M  +      +P+  + ++   +
Sbjct: 886 DKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSW 916


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 107/722 (14%), Positives = 186/722 (25%), Gaps = 177/722 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49
             + +D ET +            A QA +   + A                         
Sbjct: 357 RLVAVDTETSALD----------AMQADLVGVSLAIGPNQACYIPLGHFNEGGGGDDMFA 406

Query: 50  -------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                       + L   L  + V+ V  N  ++  +  +     I       T +++  
Sbjct: 407 EKPQQIETEVALAKLKPLLESDAVVKVGQNIKYDLNVLARH---GIAVAPIEDTMIVSFA 463

Query: 103 NGLP---------SSLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRA 150
                          +       L  +    K     GK  I         +        
Sbjct: 464 LDAGRSQDGIGGGHGMDELAQRHLGHTCLTFKEICGTGKKAIPFGEVPIDRAT------- 516

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYR 200
                     EY   D + T  L+  L P    E          R L  +   +   G +
Sbjct: 517 ----------EYAAEDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIK 566

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---- 256
           +D   +  L E  A+E  +L+ +I ++             L   LF   G          
Sbjct: 567 VDRQQLAALSERFARETARLEGEIHEIAGQEFT-VGSPKQLGDILFDKMGYKGGKKGKSG 625

Query: 257 SEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314
              T +S+L   + T       +L     +       + L +A++    R+  +    GA
Sbjct: 626 QYSTDQSVLEKLDATGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTNRVHTSYSLVGA 685

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
            +TGR S      QN+P                                +R   +A  G 
Sbjct: 686 -QTGRLSSTDPNLQNIP------------------------IRTEIGREIRQAFVADEGN 720

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R+ A +A      +AFA GEDI+  T  + F      V ++ RA  K 
Sbjct: 721 VLLAADYSQIELRLAAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKT 776

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +  A+ Y               L ++           F  +   + + +   +   E   
Sbjct: 777 INFAILYG-----ISRWGLAGRLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGY 831

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              L G                +    +   +G                     +     
Sbjct: 832 SQTLFGRK---------TWFPRINSKNQAERQGSERAAVNAPIQGTSADIIKRAMAR--- 879

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                        L  + +K D                        ++Q           
Sbjct: 880 ---------MGPALAEAGLKPD-----------------APDGVRMLLQ----------- 902

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAK 671
                        VHDE+V E P+        +   +M     P+    +PL  E    K
Sbjct: 903 -------------VHDELVFEMPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVEIGTGK 949

Query: 672 RY 673
            +
Sbjct: 950 NW 951


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 117/705 (16%), Positives = 199/705 (28%), Gaps = 161/705 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55
           +  D ETR   PL             +   + A                     +  + +
Sbjct: 388 VAFDTETRGMNPLRD----------DLVGLSLATVPGRAWYIPVGHTTGEMQLPRDRVIA 437

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L  +  D     VAHN+ F+  + ++  G+ +    +  T + A       +LK+    
Sbjct: 438 ALRSFFADPARPKVAHNAKFDIEVLERA-GMPVAGLSF-DTMLAAGLLDKRRNLKDLAFY 495

Query: 116 ---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L           GK           + P    TR     A          + +  R 
Sbjct: 496 ELELAEPLDAIGDLIGKGKNQ---VTFAEVPIARATRYAAADADMTLRLQPALEAKL-RA 551

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   +   G  +D+  +  L E + +E  ++++ I  +     
Sbjct: 552 AGSLADMFYRLEMPLVPVLVRMEQSGILLDVPYMRALGERMGRELAQIEQQIFAIAGKPF 611

Query: 233 RSSRQTYALRMYLF------LITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNR 281
            +      L   LF        TG++         +   L+ +   ++ T    +LIL  
Sbjct: 612 -NINSGDQLSEVLFGPKINLPTTGLERTRTGRYSLTAQALEEL--QASDTTGIIELILRH 668

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              S      ++ L   V+   GR+       GA  TGR S      QN+P         
Sbjct: 669 RRLSKLKSTYVDELPALVNPETGRVHTDYNQLGA-ATGRLSSNSPNLQNIP--------- 718

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR   IA+ G  L+ AD + IE RVLA I G+   I+
Sbjct: 719 ---------------TRTEEGREVRRGFIAAPGHVLIAADYSQIELRVLAHITGDPNLIQ 763

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            F  G DI+  T A+ F    + V K QR I K +   +                G+   
Sbjct: 764 TFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVI--------------YGISPF 809

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             +Q                                 +       +  +   +   +   
Sbjct: 810 GLAQR------------------------------LGISREQARNLIDSLFNQFPRIRDY 839

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +         EG                       ++     RR    D++      
Sbjct: 840 ---IDRTLETGRNEG-----------------------YVQSLFGRRRPMFDLRTS---- 869

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL------TVHDEIVS 634
                   RE         + +Q+ + DI+   M           L       VHDE++ 
Sbjct: 870 GPRRQAAEREAI------NHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIF 923

Query: 635 ETPDTPYFSVGTLC-SLMTKN-----PSWAKGLPLKAEGYEAKRY 673
           E P+     V  L    M        P +A  +PL+ E  +   +
Sbjct: 924 EAPEAEVDEVVALVRERMEGVLSDMHPPFA--VPLRVEIEKGSNW 966


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 101/685 (14%), Positives = 185/685 (27%), Gaps = 151/685 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDL 57
           +  D ET                 A +   ++A+++E                 +     
Sbjct: 336 VAFDTETTGLD----------TRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAA 385

Query: 58  LQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNAC- 113
            + +        V  N  F+  L    L ++ P +    T +LA      S   L     
Sbjct: 386 KKAIEKLMRHRIVGQNLKFDLSLLYSHLEME-PIEPEADTMILAWLLDPGSRVGLDILAQ 444

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172
             L +     K    K       +        +        AW     Y +      +  
Sbjct: 445 KFLGYQMKSFKETVKKG------EDFSSVALEEAAFYAAEDAWATRQLYFRLTELFKKGG 498

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L   L    + E     +   +   G R+D   +  L+E ++ E  +L ++I  L     
Sbjct: 499 LEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLAGTEF 558

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            + + T  L   LF   G+     ++    T +S+L +        + IL          
Sbjct: 559 -NIKSTQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYREHQKMLS 617

Query: 290 LKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
             ++ L +    D  GR+  T    G + TGR +      QN+P                
Sbjct: 618 TYVDPLLKLAEKDPEGRIHTTFVQTG-TATGRLASKDPNLQNIP---------------- 660

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           VR   +A  G +L   D + IE R+LA  +G+    +AF  GED
Sbjct: 661 --------VRSELGRRVRRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGED 712

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I++ T  K F                    A                 G+          
Sbjct: 713 IHMATAIKLFGPE---------EAAAKRNFA--------KSINFGLLYGMGS-------- 747

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                  + A +  +     + + +A+ A    V    + + + 
Sbjct: 748 ----------------------RKLADELGITTKEAKEIIEAYFAAFPTVRSYLEQIQQQ 785

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +  RRV +            +                             
Sbjct: 786 AKEQGYVETLLRRRRVFDYEGASGMMKAAILR---------------------------- 817

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDEIVSETPDTPY 641
                   +    + Q  + D++   M +      + G    ++L +HDE++ E P+   
Sbjct: 818 --------EAVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQA 869

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKA 665
                     M         +PLK 
Sbjct: 870 EETAARFRHTMEHIYP--LEVPLKC 892


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 96/693 (13%), Positives = 196/693 (28%), Gaps = 147/693 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56
             + +D ET                   I   ++A         D + ++ +  D     
Sbjct: 356 KLVCVDFETTGLDVFKDT----------IIGISFAIRSNEAFYLDVSGRTNIDKDKCIDM 405

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113
           + + L  E +  + HN  +E  +  + +        +  T V A          ++ +  
Sbjct: 406 VFETLAKEDIKVIGHNLKYEYKMM-RAINKSF-GNMYFDTMVAAYLINPTRGRYNMDDLA 463

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L+++          A          D   Y C  A+       F  Y        T 
Sbjct: 464 IAYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDAD-----ITFRFYECFAPLLKTH 518

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L +    +   E  L  +   +   G  I  + +  L +  +   +K  + I       
Sbjct: 519 NLEELFFNI---EMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEAGEE 575

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             + +    L   LF   GI     ++    T + +L+  +      + +L     +   
Sbjct: 576 F-NIQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLK 634

Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              L+     ++   GR+  +      + TGR S      QN+P                
Sbjct: 635 NTYLDVFPTLINEKTGRIHASFNQTV-TATGRLSSSEPNLQNIP---------------- 677

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G     +R+  IA  G  L+ AD + IE R+LA  + +   ++AF N +D
Sbjct: 678 --------VRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDD 729

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T  K ++   + V+   R I                                    
Sbjct: 730 IHRKTAMKIYSVSKEHVTASMRNIA----------------------------------- 754

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                    +  +  +         + +  +     E   K + + +  V    +++ E 
Sbjct: 755 ---------KIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEEVVEE 805

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                 R    S      + +  A ++ 
Sbjct: 806 VRNKGYVRTM--------------------------CGRIRDLSKTINSSNAM--ARNEA 837

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641
            R           ++Q  + D++   M    K          IV+ VHDE+V E  +   
Sbjct: 838 ERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEA 891

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
               T+   +M  +      +P+  + ++   +
Sbjct: 892 DKAMTIMKEIMEHSVK--TNVPITVDIHKGNSW 922


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 95/715 (13%), Positives = 181/715 (25%), Gaps = 171/715 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
             +D ET S            A  + +   + +           + QS            
Sbjct: 361 FAVDTETDSLS----------ATASGLVGVSLSCAPGSGVYIPLSHQSDDGGLALSGDEF 410

Query: 52  ------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
                    ++L   L D TV+ V  N  ++  +F +     I    +  T +++     
Sbjct: 411 KQIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFARY---GIRVAPYDDTMLISYVLEG 467

Query: 105 --LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 +       L  +    K   G                    ++      +   E
Sbjct: 468 GLHGHGMDELSELHLGHTPIPFKQVAGTG---------------KSAKSFKFVDLKPATE 512

Query: 162 YCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+  L P              ER +  +   +   G RID  ++  L +
Sbjct: 513 YAAEDADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQ 572

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKS 263
                  +++ +   +      +      L    F    +     +           L+ 
Sbjct: 573 DFGVRMGEIETEAHTVAGHPF-NLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEE 631

Query: 264 ILSHSNITQ--LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
           I       Q      L+L+    +       + L E      +   T     ++ TGR S
Sbjct: 632 IAEKGTHDQGQRLARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLS 691

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                           L    +R+  +A  G KL+ AD 
Sbjct: 692 SNEPNLQNIP------------------------IRTLEGRKIRTAFVARAGHKLISADY 727

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA I       KAF +G DI+  T ++ F  P++ +  E R   K +   + Y
Sbjct: 728 SQIELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIY 787

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L +          + FE +   +++    ++Q       + + G 
Sbjct: 788 G-----ISAFGLGNQLGIDNQEAGRYIKTYFERFPGIKAYMDAAKEQVKATGYVETIFGR 842

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +           +                                            
Sbjct: 843 RIHI---------PDIHAKSAGQRAFAERAAINAPI------------------------ 869

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                               TA   + R         E      +  +    +       
Sbjct: 870 ------------------QGTAADIIRRAMIRMPGALE------AAGLTTTMLLQVH--- 902

Query: 622 YDIVLTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
                   DE++          +   +  +M      A    +PL+ E   A  +
Sbjct: 903 --------DELIFEAPEAEVEAAKAVIVEVMKHAALPALDISVPLEVEAKAADNW 949


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 90/712 (12%), Positives = 181/712 (25%), Gaps = 175/712 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
           ++ +D ET +  P+           A +   + +                          
Sbjct: 360 RIAVDTETDNVDPVR----------ANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQI 409

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106
              A  + L   L    ++ +  N  ++ ++  K     +    +  T +L+        
Sbjct: 410 AMDAALAKLKPLLEAAHILKIGQNIKYDMVVLAKY---GVDVAPYDDTMLLSYDLDAGLG 466

Query: 107 -SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              +       L+      K   G                     +       +  EY  
Sbjct: 467 GHGMDELAQRHLDHGCIEFKTVCGTGKSQ---------------ISFDKVTLDVATEYAA 511

Query: 165 RDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            D + T  L++ L      E          R L  +   +   G ++D + + +L    +
Sbjct: 512 EDADVTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFS 571

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSN 269
            E  +L+  I                L   LF   G+      +       +  +   + 
Sbjct: 572 GEATRLEAAIHAEAGTPFT-VGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELERLAG 630

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                  L+L+    +       + L + ++   GR+        A +TGR S      Q
Sbjct: 631 DGVAIARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVA-QTGRLSSTDPNLQ 689

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   +A  GK ++ AD + IE R+
Sbjct: 690 NIP------------------------IRSDHGRRIRDAFVAEPGKLILSADYSQIELRL 725

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            A +A       AFA G+DI+  T  + F     +V+++ RA  K +  ++ Y       
Sbjct: 726 AAHMADVPALKDAFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSILYG-----I 776

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                   L++ +          F  +     +      Q  +      L G    L   
Sbjct: 777 SAWGLAGRLEVSREEAQGMIDRYFSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHL--- 833

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                   +    +   +                                          
Sbjct: 834 ------PWIRSAKQGERQSAERQ------------------------------------- 850

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR----DILCEGMKNATKNGYDI 624
                      +N        +      +  N   A++     D+  + +          
Sbjct: 851 ----------AINAPIQGTSADIIKRAMVRMNP--ALAAAGLGDV--KMLLQVH------ 890

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
                DE+V E           +   +M     P     +PL  E      +
Sbjct: 891 -----DELVFELAPEQVEPASAVIRAVMAGAAEPIVRLSVPLGVEIGTGPSW 937


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 110/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET S   +          QA +   + A                       +  +
Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111
            + L  +L D     + H++ ++  +F    G+ +       T + A          L +
Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A  L G Y   D + T
Sbjct: 439 LAQRFLGRSGVNYEDLCGKGAKQIG---------------FDEVAVALAGHYSCEDSDFT 483

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L + L P              E  +  +   +   G ++D   + +    + QE   L
Sbjct: 484 LQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLAL 543

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF   G+ +V  +      T + +LS          
Sbjct: 544 EQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 602

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 603 VLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 657

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   IA  G KL+ AD + IE R++A ++ +
Sbjct: 658 --------------------VRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDD 696

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AFA GEDI+  T ++ F  P+ +V  EQR   K +   L Y  G           
Sbjct: 697 ANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLAS 751

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +        F  +     +    +    +    + + G   +L          
Sbjct: 752 NLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------P 802

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                       ++    V+ 
Sbjct: 803 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 841

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T                I+Q                    +VL        E
Sbjct: 842 WLDAERLRTR--------------MIMQ-------------VHDE---LVL--------E 863

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD    +V   L  LM    +    +PL AE      +
Sbjct: 864 VPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 184/703 (26%), Gaps = 154/703 (21%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------------- 51
                 L          QA +   A A             +                    
Sbjct: 433  TGIVALEAAATSIDPMQAELIGLALALGPNDACYIPLPHKQSGDGDGLFAAGLAPDQIGP 492

Query: 52   -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PS 107
                  L   L    V  V     F  +L  +     +  +      +++          
Sbjct: 493  RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549

Query: 108  SLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
            +L     + L  + H      G  K  I         +  Y   RA+            +
Sbjct: 550  ALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARV-LKPR 608

Query: 165  RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                +   +++ L      ER L  +   +  RG  ID  ++ +L    AQ   +++ +I
Sbjct: 609  LVAGSMTAVYETL------ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEI 662

Query: 225  VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLIL 279
             +L  G   +      L   LF   G+     ++     T   +L             IL
Sbjct: 663  RELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKIL 721

Query: 280  NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            +    S       + L   V        T     A+ TGR S      QN+P        
Sbjct: 722  DWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP-------- 773

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                    +R   +A+ G KLV AD + IE R+L+ +A      
Sbjct: 774  ----------------VRTEDGRKIRRAFVATPGNKLVSADYSQIELRLLSEVADVPALR 817

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            KAF +G DI+  T ++ F  P++ +  E R   K +                    G+  
Sbjct: 818  KAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS- 862

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                             A +  +         K +  +  G+  
Sbjct: 863  -----------------------------AFGLANQLSIPREEAGAYIKRYFERFPGIRA 893

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               +  +                                       R+  Y D+K     
Sbjct: 894  YMDETRDFCRTHGYVTTLF--------------------------GRKCHYPDIKASNPS 927

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIV 633
            +        R             Q  + DI+   M          K    ++L VHDE++
Sbjct: 928  IRAF---NERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELI 978

Query: 634  SETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
             E P+    +   +   +M     P+    +PL+ +   A  +
Sbjct: 979  FEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1021


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/689 (15%), Positives = 192/689 (27%), Gaps = 150/689 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYLR 62
           +  D ET S             + A I   ++A+++E              P+ +     
Sbjct: 377 VSFDTETTSIDS----------KSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAA 426

Query: 63  DETV------MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC- 113
              +        V  N  ++  + K    I+ P  R+  T VLA          + +   
Sbjct: 427 KAAIDSLFRGYVVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISP 485

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L +          K       +          T      AW     Y K        L
Sbjct: 486 RYLGYETVHFGDVVKKG------ETFASVELDAATIYASEDAWVTLRLYFKLKGLLEPAL 539

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           FK      + E     +   +   G +ID++++ +L     +  + L ++I +L  G   
Sbjct: 540 FKL---AQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELC-GEQF 595

Query: 234 SSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF   G+           T +S+L        A   IL+          
Sbjct: 596 NINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYRELFKLQST 655

Query: 291 KLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               L +   +D   R+R      G + TGR +      QN+P                 
Sbjct: 656 YCEPLLQLALADAQNRVRSNFLQTG-TATGRLASKNPNLQNIP----------------- 697

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G  +  VR C +A  G  L+  D + IE R+LA  + +   + AF   EDI
Sbjct: 698 -------ARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFRADEDI 750

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F           R I K +   L                G+           
Sbjct: 751 HARTAISIFG----DAQPAHRTIAKSINFGLI--------------YGMG---------- 782

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                 + +    +     +   + + A    + +  + +    
Sbjct: 783 --------------------AGKLSDSLGIARAEAKGYIERYFAAFSTIKEFLQSIKSDA 822

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                       D ++     RR  +       + +        
Sbjct: 823 K--------------------------ADGYVSTLFGRRRYFDFANARNNMVY------- 849

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDTPYFSV- 644
              +Y  +      Q  + DI+ + M + +        ++L +HDE++ E  D       
Sbjct: 850 --ASYEREAVNTKFQGSAADIIKKAMVDISPLLNGEARLILQIHDELIFEVRDDLAQGFG 907

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +M    S    +PLK     AKR+
Sbjct: 908 ARAQEIMQSAAS--LNVPLKTSLNIAKRW 934


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET S   +          QA +   + A                       +  +
Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111
            + L  +L D     + H++ ++  +F    G+ +       T + A          L +
Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A  L G Y   D + T
Sbjct: 439 LAQRFLGRSGVNYEDLCGKGAKQIG---------------FDEVAVPLAGHYSCEDSDFT 483

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L + L P              E  +  +   +   G ++D   + +    + QE   L
Sbjct: 484 LQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLAL 543

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF   G+ +V  +      T + +LS          
Sbjct: 544 EQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 602

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   ++   GR+        A  TGR +      QN+P    
Sbjct: 603 VLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 657

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   IA  G KL+ AD + IE R++A ++ +
Sbjct: 658 --------------------VRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDD 696

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AFA GEDI+  T ++ F  P+ +V  EQR   K +   L Y  G           
Sbjct: 697 ANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLAS 751

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +        F  +     +    +    +    + + G   +L          
Sbjct: 752 NLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------P 802

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                       ++    V+ 
Sbjct: 803 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 841

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T                I+Q                    +VL        E
Sbjct: 842 WLDAERLRTR--------------MIMQ-------------VHDE---LVL--------E 863

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD    +V   L  LM    +    +PL AE      +
Sbjct: 864 VPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 189/707 (26%), Gaps = 173/707 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--------------EQ 50
             D ET    PL          +A +   + A   E                        
Sbjct: 367 AFDCETTGLNPL----------EAELAGFSLALKAEEAFYIPVKLPPPELQSQAPQPMPL 416

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
               S+L +  + + +  + HN  F+    +     +        T + A       +  
Sbjct: 417 EKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSF 476

Query: 111 NACLALNF----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +     +          K    K  I                       ++    Y   D
Sbjct: 477 SLDSLASSLLKLQTIAYKDVVPKGKI------------------FSDVPYEQAVAYAAED 518

Query: 167 VEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            + T + ++ L+P              E  L  L   +   G  +  + + +  E + +E
Sbjct: 519 ADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKKEELAEFSEELGKE 578

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
               + +I  +      +      L+  LF    +     ++    T  S+L       +
Sbjct: 579 IIVHEREIFDIVGHEF-NIASPKQLQEVLFTELKLPTGKKTKTGYSTDTSVLEVLASEHV 637

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
               IL   A +       + L      +GR+  +    G + TGR S      QN+P  
Sbjct: 638 IPAKILEYRALTKLKSTYTDALPALADKNGRVHTSFIQTG-TATGRLSSRDPNLQNIP-- 694

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                     A   +R    A  GK L+ AD A IE  +LA ++
Sbjct: 695 ----------------------IRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHLS 732

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AF  G D++  T A  F  PI +V  + R I K +                  
Sbjct: 733 QDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINF--------------GV 778

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+   + S                                 ++         + +   
Sbjct: 779 MYGMSAFRLSNA------------------------------LRIPRRQAADFIETYFKT 808

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           + GV    ++L E           +  RR         +  +                  
Sbjct: 809 YSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQ------------------ 850

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                      +   R            +Q  + DI+   M          K    ++L 
Sbjct: 851 -----------AGAERVAI------NTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQ 893

Query: 628 VHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+    +V TL    M         +PL+      K +
Sbjct: 894 VHDELICEAPEKETETVKTLLRQEMESVVKLL--VPLRVNIESGKTW 938


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 191/702 (27%), Gaps = 168/702 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
               ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYTSIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                    +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488

Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF               + + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL  +      + TGR +      QN+P      
Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEA 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 177/451 (39%), Positives = 255/451 (56%), Gaps = 13/451 (2%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 4   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 63  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q
Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  R  +S ++  K   L +
Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMK 302

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 303 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 362

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409
           + + L S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF         D+Y
Sbjct: 363 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 422

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
              YAKA+   +++V+K+QR IGKV+ELA  
Sbjct: 423 KLAYAKAYGIEVERVTKDQRQIGKVLELACI 453



 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            GY GG   F T A    LDL + +         +   +A+S +     +   + + +++
Sbjct: 739 CGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERV 798

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              AC+ +K+ WR  H      W +L       +        ++      L +RR    +
Sbjct: 799 FI-ACDSLKRLWRRAHPATCDFWYELERTVRTAIATP-----QKTLYCGYLKIRRDGAWL 852

Query: 559 HIVLPSSRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
            I LPS R + Y      KG+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   
Sbjct: 853 RIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGN 912

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           M      GY IVLTVHDEI+SE PD+P +S   +  L+   P WA  +PL A G+E+ RY
Sbjct: 913 MPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRY 972

Query: 674 RK 675
           RK
Sbjct: 973 RK 974


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/690 (13%), Positives = 190/690 (27%), Gaps = 134/690 (19%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMP 54
           M +  +  D ET    PL           A +   A++W+                  + 
Sbjct: 373 MKQPSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIAFPKEKEAAQEII 422

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
             L  +     +  +  N  ++  + +K   I +   +   T +           ++   
Sbjct: 423 ELLRPFFEATEIEKIGQNLKYDLKVLRKY-DIVVKG-QLFDTMLAHYLINPDMRHNMDIL 480

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               LN++        GK    +  K   D P  D T      A            E   
Sbjct: 481 AETYLNYTPVSITELIGKK--GKNQKSMRDVPVADQTEYAVEDADITLQLKEHFSKELGE 538

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              ++L   +D E  L  +   +   G  +D   +  L + +  +   L+++I       
Sbjct: 539 ANTQKLF--TDIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKNIYAEAGEE 596

Query: 232 IRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF    + +    ++     T + +LS           +L     + 
Sbjct: 597 F-NIASPKQLGEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADVLEYRGLAK 655

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                ++ L   V     R+        A  TGR S      QN+P              
Sbjct: 656 LKSTYVDALPLQVEPATQRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------- 700

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             VR   +       L+ AD + IE R++A ++ E+  ++AF N
Sbjct: 701 ----------IRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEETMMEAFKN 750

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GEDI+ +T +K F+ P+++V++EQR+  K +   + Y                 L +   
Sbjct: 751 GEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTSLSRGEA 805

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + +E + + + +     +   +    + ++G          R     +      +
Sbjct: 806 KELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGR---------RRYLNAINGSNAIV 856

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                          +                          ++   ++       N  T
Sbjct: 857 RGAAERNAVNAPIQGSAADII---------------------KIAMINIYRKLEEGNYKT 895

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                                        +         +V  VH              +
Sbjct: 896 K---------------------------MLLQVHDE---LVFDVH--------KDELDEM 917

Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            T +   M     +   +PL  E    + +
Sbjct: 918 KTMIKHEMENA--YLMDVPLDVEVGIGQNW 945


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
          Length = 904

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET S   +          QA +   + A                       +  +
Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111
            + L  +L D     + H++ ++  +F    G+ +       T + A          L +
Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L  S    +   GK                         A  L G Y   D + T
Sbjct: 439 LAQRFLGRSGVNYEDLCGKGAKQIG---------------FDEVAVPLAGHYSCEDSDFT 483

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L + L P              E  +  +   +   G ++D   + +    + QE   L
Sbjct: 484 LQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLAL 543

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276
           ++   +L      +      L   LF   G+ +V  +      T + +LS          
Sbjct: 544 EQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 602

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           ++L     S       + L   +S   GR+        A  TGR +      QN+P    
Sbjct: 603 VLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 657

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                   A   VR   IA  G KL+ AD + IE R++A ++ +
Sbjct: 658 --------------------VRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDD 696

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AFA GEDI+  T ++ F  P+ +V  EQR   K +   L Y  G           
Sbjct: 697 ANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLAS 751

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +        F  +     +    +    +    + + G   +L          
Sbjct: 752 NLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------P 802

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +        +G                                       ++    V+ 
Sbjct: 803 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 841

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   T                I+Q                    +VL        E
Sbjct: 842 WLDAERLRTR--------------MIMQ-------------VHDE---LVL--------E 863

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD    +V   L  LM    +    +PL AE      +
Sbjct: 864 VPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 99/679 (14%), Positives = 175/679 (25%), Gaps = 153/679 (22%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLF 75
             A +   A A +           +            + + +   L D  +  V H+  F
Sbjct: 340 MSAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAVMGPLLADPELPKVGHDVKF 399

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLA-LNFSEHLTKMEEGKALI 132
             ++  +   I +    +  T + +          L       L            K   
Sbjct: 400 CEVILLRHR-IGLVGVSF-DTMLASYLLDPEGKNQLHELAERELGAKMQTLDEVAPKRRG 457

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------D 182
                           RA           Y     +    L  RL P             
Sbjct: 458 Q-------------AQRALDEIELGEASSYGAAFADVALSLTDRLRPRLRAEKLEDLLVQ 504

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G  +D   + +L   +  E   L++   ++    I +      L 
Sbjct: 505 IELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDI-NLASPKQLE 563

Query: 243 MYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    +           T   +L   +       ++L   A +      ++ L   V
Sbjct: 564 AVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLV 623

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
               GR+        A  TGR S      QN+P                           
Sbjct: 624 HPGTGRIHTRWGQAVA-ATGRLSSQDPNLQNIP------------------------IRT 658

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G  +V AD + IE RVLA ++ +   + AF  G+D++V T  + F 
Sbjct: 659 ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFG 718

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
                V+ E R   K +   + Y              G+     ++ +            
Sbjct: 719 VDQAGVTAEMRRRSKTINFGVIY--------------GMGESALAKRLD----------- 753

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                              +          A+ A+++GV +  +               +
Sbjct: 754 -------------------ISRAEAARFIDAYFARYRGVHEFMEGTMAEAKRSESVRTLL 794

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             RR+    R   R                                +Q  R         
Sbjct: 795 GRRRLLPDLRSSDRMR-----------------------------RAQAERIAQ------ 819

Query: 599 ENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
              +Q  + D+L   M    +    G  +VLTVHDE+  E P          +   M   
Sbjct: 820 NTPIQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESV 879

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL  +      +
Sbjct: 880 FP--LDVPLVVDVGHGPTW 896


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 193/696 (27%), Gaps = 158/696 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
           +  D ET       K         A +   ++A+ +E                       
Sbjct: 321 VAFDTETD-DLDTKK---------ANLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKA 370

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
              + +         + HN  F+  L  +  GID   K  + T +LA      SS  L++
Sbjct: 371 LEAISKIFEH---TIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLES 425

Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L+      K    K       +           +     A   +  Y K      
Sbjct: 426 VAKRFLDHDMIAYKETVKKG------EDFSQVSIDAACKYASEDAVITYMVYFKLLDALR 479

Query: 171 RELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           ++    LI  +   E         +   G +ID+    +L+  + +   ++ + I +   
Sbjct: 480 KQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEITQKIYEYAG 539

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSG 286
           G   +   T  L   LF    +  +  ++    T ++ L           L+L       
Sbjct: 540 GEF-NINSTKQLAAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPLLLEYRELYK 598

Query: 287 SAILKLNTLSEA--VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                ++ L          R+  +    G + TGR +      QN+P             
Sbjct: 599 LKSTYIDPLINYAKRDPKHRIYTSFIQTG-TATGRLASKNPNLQNIP------------- 644

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   IA  G+ L+  D + IE R+LA  + +   ++AF  
Sbjct: 645 -----------IKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQK 693

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G DI++ T  K F       +KE+R I K +   L Y  G+                   
Sbjct: 694 GRDIHMETAIKLFGKEH---AKEKRNIAKSINFGLIYGMGS------------------- 731

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                     + A    +     + + +++ A    V    + +
Sbjct: 732 -------------------------RKLAETLGISTKEAKAIIESYFASFPTVKSYLESV 766

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                        +  RR                                    Y + A 
Sbjct: 767 ENFAKTHGYVETLLKRRR------------------------------------YFDFAH 790

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
           +   +   Y  + T  + Q  + D++   M               I+L +HDE++ E  +
Sbjct: 791 ASGAQLAAYLREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQE 850

Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                       +M         +P++     A+ +
Sbjct: 851 NQAQELAEEFKQIMQTIHP--LNVPIECSVQIARNW 884


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 191/701 (27%), Gaps = 152/701 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSDLL 58
           D+ET     L       +   A +   A A   +                    +   L 
Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LAL 116
            +LR       AH+  ++ ++ ++  G   P   +  T + A   G  +  LK      L
Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERA-GFPRPHIDF-DTMIAAYLLGENAVGLKELAFTKL 440

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +         G+                               +Y   DVEAT  L + 
Sbjct: 441 GWEMEEITELIGRGKKQL---------------TMDRAEIARVTQYACADVEATYRLVEV 485

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P  +           E  L  +   +   G  ID+  + +L  ++  +   L+  I +
Sbjct: 486 LRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYE 545

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L   LF   G+     ++      + +L +   T    + IL    
Sbjct: 546 LAGHPF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ 604

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                   ++ L   V    GR+        A  TGR S      QN+P           
Sbjct: 605 LLKLKSTYVDALPRQVHPQTGRVHTIFHQTVA-ATGRLSSSDPNLQNIP----------- 652

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-------LVVADLAGIEARVLAWIA 393
                          G     VR   IA    G +       L+  D + IE R++A  +
Sbjct: 653 -------------ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFS 699

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AFA G+DI+  T ++ F  P+D V+ E R I KV+   + Y       +    
Sbjct: 700 QDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGL 754

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                + +        + F+ +     +    + +  E    + L G          R  
Sbjct: 755 ARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR---------RRY 805

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +    +                                   +L    V
Sbjct: 806 LPEITSSNPARRQAAERMAVNMPLQGTAADI---------------------MKLAMIAV 844

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
               +     +                             +         +VL       
Sbjct: 845 HRPLAERGLRSR---------------------------MLLQVHDE---LVL------- 867

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P++   +   L  + M++       +PL+ +      +
Sbjct: 868 -EVPESELATTTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 98/696 (14%), Positives = 184/696 (26%), Gaps = 157/696 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET    P              +   +++ D +                     A 
Sbjct: 341 IAFDTETTGLDPSKDH----------LVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAA 390

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111
              +           + HN  F+     + LG+D     +  T VLA       S  + N
Sbjct: 391 AKAIRLIFEH---RVIGHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDN 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L+      K    K       +        D  +     A+  +  Y     +  
Sbjct: 447 LSQSLLHHEMIHFKDTVKKG------ENFASVAIEDACKYAGEDAYITYRLYEVLKEQLL 500

Query: 171 REL-FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            +   + L    D E    L    +   G  +D  ++   ++ +A E   L E I     
Sbjct: 501 LKGGQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATLTEQIH-SAC 559

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
           G + +      L + LF   G+     ++    T + +L           ++L       
Sbjct: 560 GTVFNLNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPMLLQYREYHK 619

Query: 287 SAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                +  L     +D   R+  +    G + TGR S      QN+P             
Sbjct: 620 LYSTYIEPLIALAQNDPSSRIYTSFVQTG-TATGRLSSKNPNLQNIP------------- 665

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +A  GKKL+  D + IE R+LA  + +   + AF  
Sbjct: 666 -----------VKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNE 714

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G DI++ T    F       +  +R I K +   L Y  G                    
Sbjct: 715 GHDIHMQTAIALFGAE---DASRKRNIAKTVNFGLLYGMGQ------------------- 752

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                     + +    +     + + + +      V   +  +
Sbjct: 753 -------------------------KKLSDTLGITTKEAKEIIERYFETFPSVKGYFNGI 787

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E    +      +  RR                                    Y +  +
Sbjct: 788 VEQAKEIGYVETLLHRRR------------------------------------YFDFGS 811

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
           +  M +  Y  +    + Q  + D++   M               ++L +HDE++ E   
Sbjct: 812 ATPMLKAAYERESVNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDA 871

Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                        M +       +PLK   +    +
Sbjct: 872 DVAEEYAVRFVDAMERILE--LRVPLKTSMHIGNHW 905


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 199/694 (28%), Gaps = 151/694 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET S             + A I   ++ +++                  +   
Sbjct: 332 SIVAFDTETTSLD----------TKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSIE 381

Query: 56  DLLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112
           D    +        +  N  ++  + K    I++    +  T +LA      S   L   
Sbjct: 382 DAKSAINKLNNFKLIVQNFKYDFDIIKFNFDIELNL--FADTIILAWLLDSSSKVGLDAL 439

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                + +    K    K                +        A   +  Y K   E  +
Sbjct: 440 AKNYFDHTMIAFKDVVKKG------DDFSTVDISNACNYAAEDALMTYKIYFKLLEEFKK 493

Query: 172 ELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           +  + L+ + +D E     +   + + G +ID  ++  L+    +  ++L + I +L   
Sbjct: 494 QNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHELAGT 553

Query: 231 IIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L + LF   G+           T + +L+    +     +IL+   +   
Sbjct: 554 KF-NINSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVILDYREAYKL 612

Query: 288 AILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
               +  L E  S+D   ++  +    G + TGR S      QN+P              
Sbjct: 613 QSTYIEPLLELASNDSENKIYTSFLQTG-TATGRLSSKNPNLQNIP-------------- 657

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                         A   +R   IA +G KLV  D + IE R+LA  + +   + AF + 
Sbjct: 658 ----------VKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSD 707

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI+  T  K F    ++ + ++R I K +   L Y  G+                    
Sbjct: 708 LDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGS-------------------- 744

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                    + A   K+     ++   ++      V +  K + 
Sbjct: 745 ------------------------KKLADTLKITPKEAKVYIDSYFEAFTNVKEYMKSIE 780

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +           I  RR+ +       +    +                           
Sbjct: 781 DFALENGYVETLIKRRRIFDFNAANTMQRIGYLR-------------------------- 814

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTP 640
                     +      Q  + D++   M              ++L +HDE++ E  +  
Sbjct: 815 ----------EAVNTKFQGSAADLIKLSMIKIFEKYKNNEDLKMILQIHDELIFEVKNEK 864

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   L  +M    +    +PLK        +
Sbjct: 865 QDEITNDLKKIMENIFT--LEIPLKVSVAVGNSW 896


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 185/709 (26%), Gaps = 169/709 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           + +D ET         G+            + A                           
Sbjct: 346 VAVDTETDML-DCVSCGL---------VGISLAVAPNAACYIPVGHGGTDMFAERPAQLD 395

Query: 53  ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG----- 104
              + + L   L D+ V+ V  N  ++  + ++     I    +  T V++         
Sbjct: 396 KALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH---GIEVVPYDDTIVMSFDLEAGKSL 452

Query: 105 LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
               +  A    L       K   G                     +          EY 
Sbjct: 453 SGHGMDEAARQHLGHECISFKDVVGTGKNQ---------------ISFAEVPLPRATEYA 497

Query: 164 KRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             D + T  L+KR       E          R L  +   +  +G ++D + + +L    
Sbjct: 498 AEDADVTLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREALSRLSAEF 557

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSN 269
                 L+ +I ++      +   T  L   LF   G          +  T  +IL    
Sbjct: 558 TAGIAALETEIHEIAGQPF-AIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLK 616

Query: 270 ITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                    +L     S       + L   ++ D GR+  +    GA +TGR S      
Sbjct: 617 AQGAPIAAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGA-QTGRLSSTDPNL 675

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R   +A  G  ++ AD + IE R
Sbjct: 676 QNIP------------------------IRTEVGRQIRHAFVAEPGHVILAADYSQIELR 711

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           + A +A      +AFA GEDI+  T  + F     +V++E R   K +  A+ Y      
Sbjct: 712 LAAHMADVPALKEAFAAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYG----- 762

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                    L++         +  +E +     +     ++  E    + L G       
Sbjct: 763 ISRWGLAGRLEISADEAQDMISRYYERFPGISIYINETIEKARERGYTETLFGRK----- 817

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                    +    +   +G                A++ +  M R    +     S  R
Sbjct: 818 ----TWFPRIKASIQHERQGAERAAINAPIQGT--SADIIKRAMVRMGPALEAAGLSGVR 871

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +                                             +             
Sbjct: 872 M---------------------------------------------LLQVH--------- 877

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
             DE+V E P+    +   +   +M     P     +PL  E      +
Sbjct: 878 --DELVFEVPEGDVDAASAVVRRVMETAAEPIVTLSVPLGVEIGTGPSW 924


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 97/680 (14%), Positives = 180/680 (26%), Gaps = 149/680 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYL 61
            +  D ET               + A +   ++ ++DE              P  +    
Sbjct: 318 IIAFDTETT----------DIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDF 367

Query: 62  RD---ETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNAC 113
                  +     V  N  ++  + K+ LG++ P  ++  T VLA          +    
Sbjct: 368 AAWAVGQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDALA 426

Query: 114 LAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             L N+     +    +       +     P  +  +     AW     Y          
Sbjct: 427 KRLYNYDTIKFEDVVRRG------ETFASVPLENAAKYAAEDAWITLKFYKSFLNLLDPA 480

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L   +   +  E    L    +   G  I+   +  L      + K L  +I +LT G  
Sbjct: 481 L---IELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIYELT-GEN 536

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF    + +   ++    T +++L+      L    +L          
Sbjct: 537 FNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEYRELYKLQS 596

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                L    + D   R    F    + TGR +      QN+P                 
Sbjct: 597 TYCEPLLNLANKDENSRIYTNFVQTGTSTGRLASKNPNLQNIP----------------- 639

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G  +  VR    A  G   V  D + IE R+LA  + ++  +KAF N EDI
Sbjct: 640 -------ARGSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDI 692

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F         + RA+ K +   L Y  G+                       
Sbjct: 693 HARTAISIFG----SADGQNRAVAKSINFGLIYGMGSSKLAG------------------ 730

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                     +  +     +   + +      +    + +    
Sbjct: 731 --------------------------QVNISRAEAKEYIERYFKAFPTIKGFLEGIKTAA 764

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                          +     R+  +              +  M
Sbjct: 765 KNEG--------------------------FVRTLLGRKRFFD----------FTNATPM 788

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSV- 644
           +   Y  +    I Q  + DI+   M            ++L +HDE++ E  D       
Sbjct: 789 QTAMYEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEVADEHAAEFG 848

Query: 645 GTLCSLMTKNPSWAKGLPLK 664
                +M +   +   +PLK
Sbjct: 849 EAAQKIMQEI--YKLNVPLK 866


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 102/690 (14%), Positives = 190/690 (27%), Gaps = 153/690 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD------L 57
           +  D ET S            A+ A I   ++ ++++                       
Sbjct: 315 ISFDTETTSTD----------AKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQISMNSA 364

Query: 58  LQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112
              +    +     +  N  ++  +     GI+ P K +  T +LA  +   SS  + N 
Sbjct: 365 KWAI--SQIYKGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMDNL 421

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
              L N+     +    K       +          ++     AW     Y     +   
Sbjct: 422 AKKLYNYETIKFESVVKKG------EDFSSVDLQSASKYASEDAWITLKFYKTFTNKLE- 474

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L    + E    L    +   G R++L+ +  L        + L  +I +L +  
Sbjct: 475 --ESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIYELCEQR 532

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +   +  L   LF    +     ++    T +S+LS       + + IL         
Sbjct: 533 F-NINSSKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYRELYKLQ 591

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                 L      D   R    F    + TGR S      QN+P                
Sbjct: 592 STYCEPLLNLAIKDENHRVYTNFIQTGTATGRLSSKNPNLQNIP---------------- 635

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G  +  +R+     +G  L+  D + IE R+LA  + +   I+AF NG+D
Sbjct: 636 --------ARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDD 687

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T    F     + + + RAI K +   L Y  G+                      
Sbjct: 688 IHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSN----------------- 726

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                      +  +   + +     +      +      +   
Sbjct: 727 ---------------------------ELSIDKKSAKEYIDRYFKAFSTIKDFLDSIKNR 759

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                        D  +     R+  +    G  + +       
Sbjct: 760 AK--------------------------NDGFVETLIGRKRYFD--FGGATPM------- 784

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSV 644
            +   +  +      Q  + DI+   M            ++L +HDE++ E  D    S 
Sbjct: 785 -QLAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDELIFEVRDEIAPSF 843

Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +  LM      A  +PL A    AK +
Sbjct: 844 AKNVQELMQTVV--ALNVPLVANWGMAKNW 871


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 192/701 (27%), Gaps = 152/701 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSDLL 58
           D+ET     L       +   A +   A A   +                    +   L 
Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LAL 116
            +LR       AH+  ++ ++ ++  G   P   +  T + A   G  +  LK      L
Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERA-GFPRPHIDF-DTMIAAYLLGENAVGLKELAFTKL 440

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +         G+                               +Y   DVEAT  L + 
Sbjct: 441 GWEMEEITELIGRGKKQL---------------TMDRAEIARVTQYACADVEATYRLVEV 485

Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           L P  +           E  L  +   +   G  ID+  + +L  ++  +   L+  I +
Sbjct: 486 LRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYE 545

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L    + +      L   LF   G+     ++      + +L +   T    + IL    
Sbjct: 546 LAGHPL-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ 604

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                   ++ L   V    GR+        A  TGR S      QN+P           
Sbjct: 605 LLKLKSTYVDALPRQVHPQTGRVHTIFHQTVA-ATGRLSSSDPNLQNIP----------- 652

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-------LVVADLAGIEARVLAWIA 393
                          G     VR   IA    G +       L+  D + IE R++A  +
Sbjct: 653 -------------ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFS 699

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +   ++AFA G+DI+  T ++ F  P+D V+ E R I KV+   + Y       +    
Sbjct: 700 QDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGL 754

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                + +        + F+ +     +    + +  E    + L G          R  
Sbjct: 755 ARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR---------RRY 805

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +    +                                   +L    V
Sbjct: 806 LPEITSSNPARRQAAERMAVNMPLQGTAADI---------------------MKLAMIAV 844

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
               +     +                             +         +VL       
Sbjct: 845 HRPLAERGLRSR---------------------------MLLQVHDE---LVL------- 867

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P++   +   L  + M++       +PL+ +      +
Sbjct: 868 -EVPESELATTTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 95/694 (13%), Positives = 179/694 (25%), Gaps = 158/694 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
           S++ ID ET S            A  A +   +   + +                     
Sbjct: 314 SRIVIDTETTSLD----------ARTAGLVGISLCAELDRAWYIPLAHIEATGTPVPGQL 363

Query: 52  ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLP 106
               + + L   L    ++ V HN  ++  + K   G++I       T V A     G  
Sbjct: 364 PISEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLA--DTMVAAHLLEKGRT 421

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             L + C  +                                 A    A +    Y   D
Sbjct: 422 LKLDDLCAEIGLELTSFAEV---------------VAEDKRADAFAYVALKEACHYSCED 466

Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           V     L++                D E  +  +   +   G  +D  ++++L     ++
Sbjct: 467 VYGALSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQ 526

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             +L   I +       +      L + LF   G+     ++    T   ++        
Sbjct: 527 IGELAATIYQEVGHEF-NISSPKQLGVILFEELGLPHGRKTKTGFSTDVKVMEKLASQHP 585

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL     +      ++ L    +   GR+  +      + TGR S      QN+P 
Sbjct: 586 VPALILKYRTIAKLKSTYVDKLLLLKNPETGRIYTSFNQT-ITATGRLSSSNPNMQNIP- 643

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                        + +R   +   GK  + AD + I+ RVLA  
Sbjct: 644 -----------------------IRMEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHY 680

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+D   +AFA G+DI+  T A+ F+     V+ E R + K +   + Y           
Sbjct: 681 SGDDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMS-----AFG 735

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +          F  +   +   + + +Q  E      L+G          R 
Sbjct: 736 LAQQLGIGRKEAQRFIDRYFHLYAGVKQFMIDIVEQTRERGYATTLLGR---------RR 786

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    K + E    +                                         
Sbjct: 787 AVPDIDAKNKGMREFAERMAINTPIQGTAADIIKC------------------------- 821

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                  +     +L                 +      + +                 +
Sbjct: 822 ------AMIAVEKKLAAA-------------GLGA----KMLLQIHDE-----------L 847

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665
           V E  +        +    M         +PL A
Sbjct: 848 VFEVSEAELAETRVVVQEAMESALQ--LDVPLVA 879


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 190/710 (26%), Gaps = 176/710 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA--------------WDDEPVKLWDRTE 49
           L ID ET S   L           A +   +                             
Sbjct: 316 LVIDTETTSLNALR----------AELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGH 365

Query: 50  Q--------SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +          +P       L   L D  ++ + HN  ++  + K   G+++       +
Sbjct: 366 RLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSH-GLELA-APLADS 423

Query: 97  SVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
            + +           L +    L              L  +    +  S       A   
Sbjct: 424 MIASYLIDPGRRSHKLDDLSSEL--------------LERQLTSFAEVSAGDRRPEAFAY 469

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDL 203
                   Y  +DV A+R L++   P            + E  L  +   +   G  +D 
Sbjct: 470 VEPAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDP 529

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----- 258
            ++ +L+    +E  +L+  I +L  G   +      L   L+    +     ++     
Sbjct: 530 AVLDELEREFGRELARLESKIAELA-GESFNINSPRQLGEVLYERLKLPHGRKTKGKTGY 588

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
            T    L            +++    S      ++ L+  +   DGR+  T      + T
Sbjct: 589 STDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFNQTV-TAT 647

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  +A+ G   +
Sbjct: 648 GRLSSSNPNLQNIP------------------------IRTPEGRRLRAAFVAAAGHLFL 683

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + I+ RVLA  +G+    +AFA+ +DI+  T A+ F      VS + R + K +  
Sbjct: 684 AADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINF 743

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L   +          FE ++        + +Q         
Sbjct: 744 GIVYGMS-----AFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARRDGWVGT 798

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556
           L+     L           +    K   E      +      +A  +  +  +       
Sbjct: 799 LLNRRRPL---------PEINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACD---- 845

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    R L  +  + +                                     +  
Sbjct: 846 ---------RALREAGCRSE------------------------------------ALLQ 860

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                       HDE++ E P      VG L    M +    A  +PL  
Sbjct: 861 I-----------HDELIFEVPQDELAQVGPLIRQAMEEVMELA--VPLTV 897


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 93/703 (13%), Positives = 188/703 (26%), Gaps = 170/703 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             + ID ET S               A +   + ++ +          +  +        
Sbjct: 341 KYISIDTETSSLD----------IYTARLIGISISFKEFEGYYIPIEARGKIYIEKHYII 390

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
                +   +  +  +  N  F+  + K      IP   +  T + A         SL  
Sbjct: 391 QKFNNFFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    K                         + ++   Y   D + T
Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFAGISLEMATSYSSEDADIT 488

Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LF                 + E     +   + + G  +D + + +  + + +E + +
Sbjct: 489 FRLFNVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELI 548

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278
           + +I+K       +      +   LF    + L +  +   T   +L        + + +
Sbjct: 549 ETEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENL 607

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     +       + L E ++    RL         + TGR +      QN+P      
Sbjct: 608 IKHRQIAKLKSTYTDNLIELINYKTNRLHTNFIQTK-TATGRVTSINPNLQNIP------ 660

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R      NG   + AD + IE  +LA ++ ++ 
Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            IKAF N +DI+  T +K F     +++   R I K +                     +
Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
              +                               A +  +     +    ++   +  +
Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFIDSYFDSYPKI 778

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +   +              +  RR                           Y       
Sbjct: 779 KEFIINQINFVRNTGYSETILKRRR---------------------------YIKEINSN 811

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
           +YL    S   R          +I+Q  + DI+   M          K    I+L VHDE
Sbjct: 812 NYL--ERSAAERISI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863

Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           ++ E+P      V  +  + M    +     PL+A     K +
Sbjct: 864 MLIESPIKEENEVKKILKIMMETAYTLTP--PLRANIETGKSW 904


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 94/673 (13%), Positives = 175/673 (26%), Gaps = 142/673 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSLFER 77
             +   A++            +             +   L   L D  V  + H+   + 
Sbjct: 331 GGVVGLAFSTAARSASYVPLAQDGLDLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDM 390

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC-LALNFSEHLTKMEEGKALIA 133
           +       I +       T + +       +    +        +         GK   A
Sbjct: 391 LWLAAHE-IRLRGLEL-DTMIASYLLDATRTTPTVETVALEHAGYQALTADTVRGKGAKA 448

Query: 134 --RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                        Y C RA+            + D E   EL++ L      E+ L  + 
Sbjct: 449 PDFDRLPPDGVLAYACERADLPLQAAE-PLRARLDQERLAELYREL------EQPLIPVL 501

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G ++  D +      +  +  +L   I  L      +      L   LF    +
Sbjct: 502 ADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAGEEF-NINSPRQLSAILFEKLAL 560

Query: 252 DLVDMS-----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRL 305
                +       T   +L           L++   A        ++ L + V  D GR+
Sbjct: 561 PTRKKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTGRV 620

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +     A  TGR S      QN+P                                +R
Sbjct: 621 HTSFNQAVA-ATGRLSSSDPNLQNIP------------------------IRTPLGREIR 655

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A +G  L+ AD + IE RVLA ++ +    +AF   EDI+                
Sbjct: 656 RAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNEDIH---------------- 699

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
                                         GLD  +               +  ++ L  
Sbjct: 700 ------------------DKTALHVFGPDSGLDAHEL----------RRRAKIINYALLY 731

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                  +    +   A +    A+   +  V      + +      +            
Sbjct: 732 GKTAFTLSRDIGVTPQAAQAFIDAYFEGYPAVRGFLDGVIDEARESGEVRTMF------- 784

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                               RR +  +++     +  A  ++              +Q  
Sbjct: 785 -------------------GRRRLVPELRNRNGQIRAAAERVT---------VNMPIQGT 816

Query: 606 SRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           + DIL   M +          ++LTVHDE++ E P     SV  L    M +       +
Sbjct: 817 AADILKRAMIDLAGALPPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAAD--LTV 874

Query: 662 PLKAEGYEAKRYR 674
           PL+ +    + + 
Sbjct: 875 PLRVDVGIGENWM 887


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 103/692 (14%), Positives = 200/692 (28%), Gaps = 153/692 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSA 52
            ++  D ET S               A I   ++ WD++                     
Sbjct: 313 KEIAFDTETTSVDS----------HNAKIVGFSFCWDEKSSFYVPLAHSYLGAPDMLDKN 362

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
           +   L++ +  + +  +  N  ++  + +   G++ P  ++  T +LA          + 
Sbjct: 363 IAKRLIEAIYTKFI--IGQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMD 419

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           N      ++     +    K       +        +        AW     Y K     
Sbjct: 420 NLAKRYFDYDTIKFENVVKKG------ENFSSVDVKNAANYASEDAWITLKFYKKFCGIL 473

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           + EL   L    + E     +   + + G ++D+  + ++   IA++ K L  +I  L+ 
Sbjct: 474 STEL---LDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNEIYDLS- 529

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
           G   +   T  L   LF   G+     ++    T +S LS  +        IL       
Sbjct: 530 GENFNINSTKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILAYRELYK 589

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                   L      +   R    F    + TGR S      QN+P              
Sbjct: 590 LQSTYTEPLLALALKNDENRIFSNFLQTGTSTGRLSSKNPNLQNIPAH------------ 637

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                       G  +  +R+C ++ +G   V  D + IE R+LA  + +   ++AF   
Sbjct: 638 ------------GSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFRED 685

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T    F T      KE+RA+ K +   L                          
Sbjct: 686 EDIHSRTAISIFGTS----DKEKRAVAKTINFGLI------------------------- 716

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                    + + +  +  +  +   + +      +    ++L 
Sbjct: 717 -------------------YGMGASKLSNELGISRSDAKDYIEKYFKAFASIKNFMENLK 757

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                          +R                                    Y + A +
Sbjct: 758 SEAKKNGYTTTLFGRKR------------------------------------YFDFANA 781

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDTPYF 642
             M+   Y  +      Q  + DI+ + M   +        ++L +HDE++ E  D    
Sbjct: 782 TPMQFAMYERESVNTKFQGSAADIIKKAMVEISPFLNENTRLLLQIHDELIFEVRDDMSE 841

Query: 643 SV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           S    +  +M         +PLK      KR+
Sbjct: 842 SFGKKMQEIMQNVVK--LNVPLKTSLSINKRW 871


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 95/696 (13%), Positives = 179/696 (25%), Gaps = 152/696 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
           ++  D ET         G  A A    +   +++                +  A+    L
Sbjct: 367 EISFDTETT--------GTDANAVD--LVGMSFSIKAGEGWYIPVPADKAQAQAIVDSFL 416

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA-CLA 115
                  +  +  N  ++ I+ K   G++        T +            +       
Sbjct: 417 PLFNTTHITLIGQNIKYDMIVMKWY-GVEFNG-PVFDTMLAHYLIEPEGRRGMDLLSAQY 474

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L +     +   GK    +                          EY   D + T +L +
Sbjct: 475 LQYEPVSIETLIGKKGKGQG--------------NMRDVEIDKIKEYAVEDADITLQLKE 520

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           +  PL           D E  L  +   +   G  +D+  +      +  E K+ +E + 
Sbjct: 521 KFAPLLPLKAVDKVFYDVENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVY 580

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILN 280
               G+  +      L   LF    +D     ++     T + +L+         + IL 
Sbjct: 581 -TQAGVRFNLASPKQLGEVLFEKLLLDPKAKKTKTGQYATGEDVLAKLANKHQIVEDILV 639

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               S      ++ L   ++    R+  +     A  TGR S      QN+P        
Sbjct: 640 FRELSKLKSTYVDALPLMLNKRTNRVHTSYNQAVA-VTGRLSSNNPNLQNIP-------- 690

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   VR   +A      L+ AD + IE R++A I+G+   
Sbjct: 691 ----------------IRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHM 734

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I AF  G DI+  T AK +   +  V+ + R   K +   + Y               L 
Sbjct: 735 IDAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVS-----AFGLSENLG 789

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           + +        + F  +   + +         +    + L+G    L         + + 
Sbjct: 790 IARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWL---------KDIN 840

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +                                          +L    +     
Sbjct: 841 SSNAVVRGYAERNAINMPIQGTAADMI---------------------KLAMISIHKTLK 879

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N  +                             M           L VHDE+V +   
Sbjct: 880 KENLRSR----------------------------MI----------LQVHDELVFDVHK 901

Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                +  L    M      A  +P+  E      +
Sbjct: 902 DEIEQIKPLIQDGMRNALPLA--VPVDVEIGIGVNW 935


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 138/522 (26%), Positives = 220/522 (42%), Gaps = 70/522 (13%)

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ ++L   P+   E + + +DQ INDRG RID  LV    +       +  +   +LT
Sbjct: 1   MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      L+ +L    G     +S+ ++  +L  +        ++  R   S S+
Sbjct: 61  G--LANPNSPLQLKDWL-QQQGAKTDSLSKASVAQLLQTTTGK--VHQILALRQLLSKSS 115

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
           + K   + +A+  DGR+ G LQFYGA+RTGRW+G + Q QNLPR    +    + +    
Sbjct: 116 VKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQG 175

Query: 349 R----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                         + S  +R+  I S      VAD + +EARV+AW++ E+W+ +AFA 
Sbjct: 176 NVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEAFAK 235

Query: 405 GEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            EDIY  + ++ F  P     ++ E R  GK+ ELALGY G     K M +   +     
Sbjct: 236 NEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLV----- 290

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              L       + + WR     ++Q W 
Sbjct: 291 -----------------------------------LTDDELPPLVQMWRNASPHIVQFWW 315

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+ +     ++     +         +        + + L S R L Y   K   +   +
Sbjct: 316 DVDKAAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPKPKIGTNRFGS 369

Query: 583 AT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
            +          +  R  TYG KL ENIVQA SRD+L E M+        +V+ +HDE V
Sbjct: 370 ESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAV 429

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + P     S+ T+  LMT+ P WA GL L A G+ +  Y+K
Sbjct: 430 IDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 117/688 (17%), Positives = 200/688 (29%), Gaps = 139/688 (20%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------EQSAMPSD----L 57
            ET     L   G    A  A +T  A +  +               +     S+    L
Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +  L ++ +   AHN+ +   L     G +I    +  T + A   G           L 
Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLGE--------KNLG 437

Query: 118 FSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + + +    E   +     +            +   Q    +    K    A      
Sbjct: 438 IKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETN 497

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            +    + E  L  +   +   G  +D DL+  + E +  +  KL+E I     G   + 
Sbjct: 498 LIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA-GHSFNI 556

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF    + ++  ++    T   +L          DLIL            L
Sbjct: 557 GSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYL 616

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL   V+   R   T      + TGR S      QN+P                     
Sbjct: 617 DTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP--------------------- 655

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G     +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T
Sbjct: 656 ---VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTAT 712

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+  N    +V+KEQR + K +   + Y              GL+              
Sbjct: 713 AARLLNILPSEVTKEQRRLAKTVNFGVIYGMS---------SYGLE-------------- 749

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                   +L     +   KA+  K+  V   + ++        
Sbjct: 750 ---------------------QATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNG 788

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                +                           RR    ++      L  +     R   
Sbjct: 789 YVETLL--------------------------GRRRYIPEINSPNRILRESA---ERMAI 819

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                    VQ  S DI+   M    +          ++L VHDE++ E PD     +  
Sbjct: 820 ------NMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSA 873

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L    M+   ++   +PLK E      +
Sbjct: 874 LLMETMSGAVTF--EIPLKVELKSGANW 899


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 125/679 (18%), Positives = 205/679 (30%), Gaps = 136/679 (20%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------EQSAMPSD----LLQYLRDET 65
           L   G    A  A +T  A +                  E     ++    L   L DE 
Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVPAEFIGSASEGQMFAAEGHSGLAALLGDEK 395

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTK 124
           +   AHN+ +   L     G  +    +  T + A   G     KN     L F     +
Sbjct: 396 ISKTAHNAKYLMNLLLSA-GQAVKGLDF-DTMIAAHLLGE----KNLAIKDLVFEHFGIE 449

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
           + + + ++ R  K +  S       +   Q    +    K    A     + +   +  E
Sbjct: 450 IADIENILTRNGKKASFSEVQ---LSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVE 506

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +   G  +D DL+  + E   ++  KL+EDI     G   +      L   
Sbjct: 507 MPLLPILLGMERTGIMLDTDLLKAMAEKTGRQIFKLEEDIYARA-GHNFNIGSPQQLGRI 565

Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           LF    + ++  ++    T   +L          DLIL            L+TL   V+ 
Sbjct: 566 LFDELKLPVIKKTKTGYSTGAEVLEELKGKHRIVDLILEYRMLVKLKSTYLDTLPRMVNP 625

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R   T      + TGR S      QN+P                          G   
Sbjct: 626 HTRRLHTSFNQTRTATGRLSSSEPNLQNIP------------------------VRGEMG 661

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R   IA  G  L+  D + I+ RVLA ++ +   I+AF + +DI+  T A+  N P 
Sbjct: 662 REIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPP 721

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            KV+KEQR + K +   + Y              GL+                       
Sbjct: 722 SKVTKEQRRLAKTVNFGVIYGMS---------SYGLE----------------------- 749

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                          +L     +   KA+  K+  V   + ++ +           +   
Sbjct: 750 ------------QATELSLEEADKFIKAYFEKYPRVAVYFSEIKQQVRTQGYVETLL--- 794

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                   RR    ++      L  +     R            
Sbjct: 795 -----------------------GRRRYIPEINSPNRILRESA---ERMAI------NMP 822

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           VQ  S DI+   M    +          ++L VHDE++ E P T    +   L   M+  
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGA 882

Query: 655 PSWAKGLPLKAEGYEAKRY 673
              A  +PLK E      +
Sbjct: 883 V--AFEIPLKVELKSGANW 899


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 192/701 (27%), Gaps = 166/701 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             + ID ET S               A +   + ++ +          +     +     
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390

Query: 61  -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113
                L       +  N  F+  + K      IP   +  T + A         SL    
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L       +    K                         + ++   Y   D + T  
Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSCEDADITFR 490

Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           LF                 + E     +   + + G  +D   + +  + + +E + ++ 
Sbjct: 491 LFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIEN 550

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279
           +I+K       +      +   LF    + L          +K + S     +  ++LI 
Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIK 609

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +R  +   +    + L E ++    RL  +      + TGR +      QN+P       
Sbjct: 610 HRRIAKLKST-YTDNLIELINYKTNRLHTSFIQT-RTATGRITSINPNLQNIP------- 660

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R      NG   + AD + IE  +LA ++ ++  
Sbjct: 661 -----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           IKAF N +DI++ T +K F     +++   R I K +                     + 
Sbjct: 704 IKAFENNKDIHIETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMS 749

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
             +                               A +  +     +    ++   +  + 
Sbjct: 750 DFRL------------------------------AKELGITKEEAKGFINSYFDSYPKIK 779

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +   +              +  RR                           Y       +
Sbjct: 780 EFIINQINFVKNTGYSETILKRRR---------------------------YIKEINSNN 812

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632
           YL    S   R          + +Q  + DI+   M          K    I+L VHDE+
Sbjct: 813 YL--ERSAAERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 193/701 (27%), Gaps = 166/701 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             + ID ET S               A +   + ++ +          +     +     
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390

Query: 61  -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113
                L       +  N  F+  + K      IP   +  T + A         SL    
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L       +    K                         + ++   Y   D + T  
Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSCEDADITFR 490

Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           LF                 + E     +   + + G  +D   + +  + + +E + ++ 
Sbjct: 491 LFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIEN 550

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279
           +I+K       +      +   LF    + L          +K + S     +  ++LI 
Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIK 609

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +R  +   +    + L E ++    RL  +      + TGR +      QN+P       
Sbjct: 610 HRRIAKLKST-YTDNLIELINYKTNRLHTSFIQT-RTATGRITSINPNLQNIP------- 660

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R      NG   + AD + IE  +LA ++ ++  
Sbjct: 661 -----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           IKAF N +DI+V T +K F T   +++   R I K +                     + 
Sbjct: 704 IKAFENNKDIHVETASKLFKTEEKEITPNLRRIAKSIN--------------FGIIYRMS 749

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
             +                               A +  +     +    ++   +  + 
Sbjct: 750 DFRL------------------------------AKELGITKEEAKGFINSYFDSYPKIK 779

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +   +              +  RR                           Y       +
Sbjct: 780 EFIINQINFVKNTGYSETILKRRR---------------------------YIKEINSNN 812

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632
           YL    S   R          + +Q  + DI+   M          K    I+L VHDE+
Sbjct: 813 YL--ERSAAERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/688 (17%), Positives = 201/688 (29%), Gaps = 139/688 (20%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------EQSAMPSD----L 57
            ET     L   G    A  A +T  A +  +               +     S+    L
Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +  L ++ +   AHN+ +   L     G +I    +  T + A   G           L 
Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLGE--------KNLG 437

Query: 118 FSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + + +    E   +     +            +   Q    +    K    A     K
Sbjct: 438 IKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETK 497

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            +    + E  L  +   +   G  +D DL+  + E +  +  KL+E I     G   + 
Sbjct: 498 LIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA-GHSFNI 556

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF    + ++  ++    T   +L          DLIL            L
Sbjct: 557 GSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYL 616

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL   V+   R   T      + TGR S      QN+P                     
Sbjct: 617 DTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP--------------------- 655

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G     +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T
Sbjct: 656 ---VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTAT 712

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+  N    +V+KEQR + K +   + Y              GL+              
Sbjct: 713 AARLLNILPSEVTKEQRRLAKTVNFGVIYGMS---------SYGLE-------------- 749

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                   +L     +   KA+  K+  V   + ++        
Sbjct: 750 ---------------------QATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNG 788

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                +                           RR    ++      L  +     R   
Sbjct: 789 YVETLL--------------------------GRRRYIPEINSPNRILRESA---ERMAI 819

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                    VQ  S DI+   M    +          ++L VHDE++ E PD     +  
Sbjct: 820 ------NMPVQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSA 873

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L    M+   ++   +PLK E      +
Sbjct: 874 LLMETMSGAVTF--EIPLKVELKSGANW 899


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 96/696 (13%), Positives = 185/696 (26%), Gaps = 157/696 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           +  D ET                   +   ++   +E                       
Sbjct: 330 VAFDTETTGLD----------TRTDKMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDA 379

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111
            + L + +       V  N  F+  L     G++     +  T ++A      S   L +
Sbjct: 380 VAALKKLM---KQKIVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDS 435

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                  +     K    K       +        D T      AW  F  Y     +  
Sbjct: 436 LAQKFFKYDMKPFKEMVKKG------ENFSHVNIADATFYAAEDAWMTFLLYGAIKKKME 489

Query: 171 RE-LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L   L    D E     +   +   G ++D   +  L++ ++++  +L  +I +L+ 
Sbjct: 490 LSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELSG 549

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               + R T  L + LF   G+     ++    T +++L            IL       
Sbjct: 550 SEF-NIRSTQQLGVVLFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGKILEYREYHK 608

Query: 287 SAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                +  L +    D   R+  +    G + TGR S      QN+P             
Sbjct: 609 MLSTYVEPLLKLAKKDEKSRIYTSFIQTG-TATGRLSSKDPNLQNIP------------- 654

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR   +A  G KLV  D + IE R+LA  + +   ++AF  
Sbjct: 655 -----------VRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNK 703

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G DI++ T  K F                                               
Sbjct: 704 GTDIHMATAVKLFGEEEA------------------------------------------ 721

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                    ++ ++ +  L       + + +  +     + +   + A    V    + +
Sbjct: 722 -----KAKRNFAKSVNFGLLYGMGPKKLSDELGITSAEAKEIIANYFASFPTVKNFLEGI 776

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E           +  RR+ +                                 Y N   
Sbjct: 777 QERVKIDGYVETLLKRRRIFD---------------------------------YENANG 803

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
            Q      Y  +    + Q  + D++   M +             ++L +HDE++ E  +
Sbjct: 804 MQK---AAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIRE 860

Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +      +M     W   +PL         +
Sbjct: 861 DQVEKISKRFVHVMEHI--WELEVPLVCSVSVGDSW 894


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 95/669 (14%), Positives = 182/669 (27%), Gaps = 149/669 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYLR 62
           +  D ET               + A +   ++ ++DE       + +    P    +   
Sbjct: 303 VAFDTETTDVD----------TQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFA 352

Query: 63  D---ETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACL 114
                 +     +  N  ++  + K+ LG++ P   +  T +LA      SS  +     
Sbjct: 353 AWAISQIYKGCVIGQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALAK 411

Query: 115 AL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L ++     +         +  +        +  +     AW     Y         EL
Sbjct: 412 RLYDYDTIKFEDVV------KRGETFASVALENAAKYAAEDAWITLKFYKSFLNLLDPEL 465

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              L      E    L    +   G  I+ + +  L      + K L  +I +LT G   
Sbjct: 466 ---LALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELT-GENF 521

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF    + +   ++    T +++L+         + +L           
Sbjct: 522 NINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYRELYKLQST 581

Query: 291 KLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               L      D   R+       G + TGR S      QN+P                 
Sbjct: 582 YCEPLLNLAKKDANSRIYTNFIQTG-TSTGRLSSKNPNLQNIP----------------- 623

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                    G  +  VR C  A +    V  D + IE R+LA  + ++  ++AFAN EDI
Sbjct: 624 -------ARGALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLRAFANDEDI 676

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T    F         + RA+ K +   L Y  G+                       
Sbjct: 677 HARTAISIFG----SAEGQNRAVAKSINFGLIYGMGSSKLAN------------------ 714

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                     +  +     +   + +      +    + +    
Sbjct: 715 --------------------------QVSITRAEAKEYIERYFKAFPTIKGFLEGIKTAA 748

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                    +  +R+ +                                      T+  M
Sbjct: 749 KNEGFVRTLLGRKRLFDF------------------------------------TTATPM 772

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSV- 644
           +   Y  +    I Q  + DI+   M            ++L +HDE++ E  D       
Sbjct: 773 QTAMYEREAVNTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQDGYAEEFG 832

Query: 645 GTLCSLMTK 653
                +M +
Sbjct: 833 AAAQKIMQE 841


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 117/688 (17%), Positives = 199/688 (28%), Gaps = 139/688 (20%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----TEQSAM-----PSDL 57
            ET     L   G    A  A +T  A +  +                  M        L
Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASGGQMFVSEGHPGL 387

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +  L ++ +   AHN+ +   L     G +I    +  T + A   G           L 
Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLGE--------KNLG 437

Query: 118 FSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             + + +    E   +     +            +   Q    +    K    A      
Sbjct: 438 IKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAEIN 497

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            +    + E  L  +   +   G  +D DL+  + E +  +  KL+E I     G   + 
Sbjct: 498 LIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA-GHSFNI 556

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L   LF    + ++  ++    T   +L          DLIL            L
Sbjct: 557 GSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYL 616

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           +TL   V+   R   T      + TGR S      QN+P                     
Sbjct: 617 DTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP--------------------- 655

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                G     +R   IA  G  ++  D + I+ RVLA ++G+   I+AF   +DI+  T
Sbjct: 656 ---VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTAT 712

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+  N    +V+KEQR + K +   + Y              GL+              
Sbjct: 713 AARLLNILPSEVTKEQRRLAKTVNFGVIYGMS---------SYGLE-------------- 749

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                   +L     +   KA+  K+  V   + ++        
Sbjct: 750 ---------------------QATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNG 788

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                +                           RR    ++      L  +     R   
Sbjct: 789 YVETLL--------------------------GRRRYIPEINSPNRILRESA---ERMAI 819

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                    VQ  S DI+   M    +          ++L VHDE++ E PD  +  +  
Sbjct: 820 ------NMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSA 873

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L    M+   ++   +PLK E      +
Sbjct: 874 LLMETMSGAVTF--EIPLKVELKSGANW 899


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 91/709 (12%), Positives = 185/709 (26%), Gaps = 181/709 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD- 56
            +  D ET               E   +   ++ ++++                 +  + 
Sbjct: 333 IVAFDTETTGLD----------YENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQED 382

Query: 57  ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLK 110
               + +         V HN  F+     + LG       +  + +LA         SL 
Sbjct: 383 AKIAIKKIFNS---RVVGHNIKFDLHFVIRFLGEG-ELDIFADSMILAWLINPESALSLD 438

Query: 111 NACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                L        K    K                         A +    Y   D   
Sbjct: 439 KLSEKLLEHKMITFKESVKKG------------------ETFASVALEEACNYAAEDAYI 480

Query: 170 TRELFKRLIPLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           T  L+   + +              + E         +   G  ++   + +        
Sbjct: 481 TLRLYYLFLEMLKDQGAEHLIEEAKEVEFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDS 540

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             +L + I +L      +   T  L   LF   G+     ++    T + +L+       
Sbjct: 541 LSELTKKIYELASLEF-NINSTQQLGNVLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHE 599

Query: 274 AKDLILNRLASSGSAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               +L            +  L +      + R+  +    G + TGR S      QN+P
Sbjct: 600 IIPYLLEYREVYKLYSTYIEPLLKLSQQDKESRIHTSFVQTG-TTTGRLSSKNPNLQNIP 658

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   +A  GKKL+  D + IE R+LA 
Sbjct: 659 ------------------------TRTALGTKIREAFVAPEGKKLIGIDYSQIELRLLAH 694

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
              +   ++AF   +DI++ T    F    ++ +  +R + K +   L Y  G       
Sbjct: 695 FTQDRVLVEAFMQDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQ------ 745

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                                  + +   K+     + + + + 
Sbjct: 746 --------------------------------------KKLSETLKITTAEAKEIIERYF 767

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           +    V   ++ + +           +  RR                             
Sbjct: 768 SSFPSVKSYFRSIVDFSKEAGYVETLLKRRR----------------------------- 798

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625
                  Y +  ++  M    Y  +   +I Q  + DI+   M          K    ++
Sbjct: 799 -------YFDYESASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKML 851

Query: 626 LTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L +HDE++ E   +    +     ++M         +PLKA      ++
Sbjct: 852 LQIHDELIFEVDTSEAEILGEKFKNIMQNIMP--LNIPLKASMKIGDKW 898


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 83/677 (12%), Positives = 176/677 (25%), Gaps = 153/677 (22%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQYLRDETVMCVAHNSLFERILFKK 82
            A +   A+   +          +            +    +T++ V  N  ++  + KK
Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430

Query: 83  TLGIDIPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGS 139
             GI +         +           +L       LN+    T+   G    ++     
Sbjct: 431 Y-GIRMN-YPIFDILIAHYLINPEYLHNLDFLAKTYLNYRIINTEELIGSKKESQLSVR- 487

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWL 189
                             L  +Y   + +   +L     P+             E  L  
Sbjct: 488 -------------QVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVF 534

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   + + G ++D+  +     ++ +  + +++ I+    G I +      +   LF   
Sbjct: 535 VLSDMEEFGVKLDISALKDYSVVLNRYLESIEK-IIFQISGKIFNVNSPKMVGEILFDHL 593

Query: 250 GI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDG 303
            I             T + IL +          IL    S       ++TL   VS  D 
Sbjct: 594 KIIENSKKTKSGQYATSEGILENLKKKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDK 653

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           ++  T      + TGR S      QN+P                                
Sbjct: 654 KIHTTYNQAT-TATGRLSSNSPNLQNIP------------------------IRDKEGKE 688

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   I  +    + AD + IE R++A ++ +   ++AF NG+DI+    +  F  P+ +
Sbjct: 689 IRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAE 748

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++ + R   K+                     G+ +   ++ ++ +              
Sbjct: 749 ITCDMRRKAKITNF--------------GIIYGISVFGLAEQLQVSRFI----------- 783

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                               + +   +      +                          
Sbjct: 784 -------------------AKELINKYFMIFPDIKNYIDRSIAIARKDGYVETIFR---- 820

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 R+    D+    S +        R            +Q
Sbjct: 821 ----------------------RKRFLPDINSRNSVVR---KYAERNSINAP------IQ 849

Query: 604 AISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656
             + DI+   M    +          +++ VHDE+           V  +    M     
Sbjct: 850 GSAADIIKVAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKVKQIVVYEMEHATH 909

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL       K +
Sbjct: 910 --LKVPLVVNCGIGKNW 924


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 89/702 (12%), Positives = 193/702 (27%), Gaps = 158/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             L +D ET SP P            A +   +++  ++          +++        
Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389

Query: 55  SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            ++ ++L       V  V  N  ++ I+ +   G  + + ++  T + +      G   +
Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRRHN 447

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN++    +   G                    +       +   EY   D 
Sbjct: 448 MDDLAKEFLNYNTITYEDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 492

Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L++                + E  L  +   +   G  +D+    +L     +E 
Sbjct: 493 DVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 552

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
           + L+ +I +   G   +   T  L+  LF    + +V  ++    T   +L         
Sbjct: 553 RHLESEIHRQAGGPF-NIASTKELQKILFDDLKLRIVKKTQTGFSTDHEVLEELAGEHPI 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            + +L+    +      ++ L + V+   GR+  +     A  TGR S      QN+P  
Sbjct: 612 IEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392
                                         +R      +   +++  D + IE R++A I
Sbjct: 669 ----------------------IRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHI 706

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++A+ +G DI+  T A  +  P   V+ E R   KV+  ++ Y           
Sbjct: 707 SKDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTP-----YG 761

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +             +   +S+   M +   +      L G    +       
Sbjct: 762 LSRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVT------ 815

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    K   E    +                                   ++    
Sbjct: 816 ---DINSTHKSAKEAAKRIAINSPIQGTSADMI---------------------KIAMIK 851

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +  D    +  +                             +                 +
Sbjct: 852 IHEDIEKKHYKSR---------------------------MLLQVHDE-----------L 873

Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E            +   M    S    LP+  EG     +
Sbjct: 874 VFEVHKKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 101/669 (15%), Positives = 187/669 (27%), Gaps = 140/669 (20%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPS-----DLLQYLRDETVMCVAHNSL-FERILF 80
            + ++  A    D  V        +A+P      +L +  ++E +  + HN   F     
Sbjct: 344 SSRLSGLALCTGD-EVFYI--ETGTALPENLIATELKELWQNENIHKIGHNIKEF-ITWL 399

Query: 81  KKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALNFSEHLTKMEEGKALIARFC 136
            K   +++    +  T +             + +     LN S        GK       
Sbjct: 400 LKH-DVELNGL-YFDTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGK---GA 454

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           K   + PP      +      +F  +  +         + L    D E  L  +  ++  
Sbjct: 455 KKYSEIPPERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFN--DIELPLITVLASMEY 512

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253
            G+++D   + +  E++    K L++ I  +  G   +   T  L   LF    + +   
Sbjct: 513 HGFKVDAAKLHEYGEVLLSRIKDLEKVIY-MLAGEEFNINSTKQLGTILFEKLKLPVVKS 571

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
                 T   +L            I+     +         L + ++   G++  +    
Sbjct: 572 TKTGYSTDVEVLEELYYKHDIIPCIIEYRQLTKLYTTYAEGLEKVINPVTGKIHSSFNQT 631

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371
             + TGR S      QN+P                                +R   I S 
Sbjct: 632 V-TATGRISSTEPNLQNIP------------------------VRHEMGREIRKAFIPSS 666

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                V AD + IE RVLA I G++  I AF  GEDI+  T +  F+   + V+ E R  
Sbjct: 667 ENAVFVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRK 726

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +                    G+                                  
Sbjct: 727 AKAVN--------------FGIVYGISDY------------------------------G 742

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            A    +     +     + AK+  V     ++                           
Sbjct: 743 LARDLGITRKEAKRYIDDYFAKYPKVKTYVDEIVRVGQEQGYVETLFH------------ 790

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         RR    ++     +  +   ++              +Q  + DI+ 
Sbjct: 791 --------------RRRYLPELASKNFHQRSFGKRV---------AMNTPIQGTAADIIK 827

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
             M    K          ++L VHDE+V ET +    +V  L    M +       +PL 
Sbjct: 828 IAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE--LSVPLV 885

Query: 665 AEGYEAKRY 673
            +    K +
Sbjct: 886 VDVSIGKNW 894


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 193/663 (29%), Gaps = 132/663 (19%)

Query: 29  VITLCAYAWDDEPVKLWDR---TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
            I    ++ + E +   D    +++ A+   + + L DE +  + H+   E   F     
Sbjct: 345 HILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEIRHFYVH-D 403

Query: 86  IDIPSKRWICTSVLARTNGL---PSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSID 141
           I++ +  +  T +            +LK+             +   GK         +  
Sbjct: 404 IEMKNVTF-DTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPK 462

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                          +++ E   +  E   E         + E  L  +   +  +G ++
Sbjct: 463 EDLMKYLCQRVSVIGKIYPEIKAKMQELELE-----KLYYEVELPLVEVLAAMEYKGIKV 517

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D  ++  L+    ++   L + I +L      +      L   LF    +  +  ++   
Sbjct: 518 DRSMLEILEIEFGEQIDLLTKAIHELA-ETNFNINSPKQLGEVLFEKLELPPIKKTKTGY 576

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
            T   +L            IL     +      ++ L   ++   GR+         + T
Sbjct: 577 STNAEVLEKLQDQHDIIPKILEYRQVTKLKSTYVDGLLNIINPETGRIHSNFNQTV-TTT 635

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   +A+   + +
Sbjct: 636 GRISSTEPNLQNIP------------------------IKLEMGRRLRKVFVANENHQFI 671

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E RVLA I  ++  + AF   +DI+  T A+ F+ P+++V+   R+  K +  
Sbjct: 672 DADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAVNF 731

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L+                                       
Sbjct: 732 GIVYG-----ISDYGLSQNLN--------------------------------------- 747

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +  K+  V +   ++ E            +                  
Sbjct: 748 ITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFN------------------ 789

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    ++K     + +   ++              +Q  + DI+   M N 
Sbjct: 790 --------RRRYLPELKSRNFNIRSFGERM---------AMNTPIQGSAADIIKIAMVNV 832

Query: 618 TKNG------YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670
            +          ++L VHDE++ E PD        +    M +  +    + LK +   A
Sbjct: 833 YRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAMN--LKVQLKVDLAYA 890

Query: 671 KRY 673
             +
Sbjct: 891 NNW 893


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/702 (12%), Positives = 193/702 (27%), Gaps = 158/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             L +D ET SP P            A +   +++  ++          +++        
Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389

Query: 55  SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            ++ ++L       V  V  N  ++ I+ +   G  + + ++  T + +      G   +
Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRRHN 447

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     LN++    +   G                    +       +   EY   D 
Sbjct: 448 MDDLAKEFLNYNTITYEDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 492

Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L++                + E  L  +   +   G  +D+    +L     +E 
Sbjct: 493 DVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 552

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
           + L+ +I +   G   +   T  L+  LF    + +V  ++    T   +L         
Sbjct: 553 RHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPI 611

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            + +L+    +      ++ L + V+   GR+  +     A  TGR S      QN+P  
Sbjct: 612 IEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 668

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392
                                         +R      +   +++  D + IE R++A I
Sbjct: 669 ----------------------IRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHI 706

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++A+ +G DI+  T A  +  P   V+ E R   KV+  ++ Y           
Sbjct: 707 SKDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTP-----YG 761

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +             +   +S+   M +   +      L G    +       
Sbjct: 762 LSRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVT------ 815

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    K   E    +                                   ++    
Sbjct: 816 ---DINSTHKSAKEAAKRIAINSPIQGTSADMI---------------------KIAMIK 851

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +  D    +  +                             +                 +
Sbjct: 852 IHEDIEKKHYKSR---------------------------MLLQVHDE-----------L 873

Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           V E            +   M    S    LP+  EG     +
Sbjct: 874 VFEVHKKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 199/700 (28%), Gaps = 167/700 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDLLQ 59
            +  D+ET S  P           QA I   A +            ++     +  +++ 
Sbjct: 337 IISFDLETSSLDP----------YQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVD 386

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LA 115
            L ++ V  +  N  ++  + K   GI++    +  + + A          ++ +     
Sbjct: 387 LLNNKKV--IGQNLKYDITVLK-VNGIELSKVHF-DSMIAAYLLNPDSRRFNMDDLAKEY 442

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L++     K   GK +                         +   EY   D +    LF+
Sbjct: 443 LDYKTIKYKEVMGKDIKLLTLGDIDK---------------KRVVEYAGEDADIAYRLFE 487

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L P              E     +   +   G   DL  + KL+E   ++   L  ++ 
Sbjct: 488 VLKPKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMK 547

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNR 281
           K+      +      +   LF   G+     ++     T    L          + +L  
Sbjct: 548 KIVGYDF-NPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEY 606

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                     +  + + V+   GR+  +    G + TGR S      QNLP         
Sbjct: 607 RKYQKLLSTYIIAIPKLVNKKTGRVHTSFNQTG-TATGRLSSSEPNLQNLP--------- 656

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                + +RS + A  +   L+ AD + IE RVLA +  ++  I
Sbjct: 657 ---------------IREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLI 701

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF NGEDI+  T A  F   ID V                                   
Sbjct: 702 NAFNNGEDIHALTAAAIFGVKIDDVDYNM------------------------------- 730

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            +  +  L         A   K+     +     +   +Q V +
Sbjct: 731 -------------RRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKE 777

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   +                                       R+    ++K     
Sbjct: 778 YQESSLKIATQKGYVETIF--------------------------GRKRFLKNIK----- 806

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSET 636
             T  S+L R       +    +Q  + DI+   M N  K       ++L VHDE+V E 
Sbjct: 807 --TGKSELKRI------VINTPIQGSAADIMKLAMINLYKKLPKEAKLILQVHDEVVIEL 858

Query: 637 PDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           P+        +    M         +PLK +    K ++K
Sbjct: 859 PEKIVEETKKMVQDCMENAVK--LNIPLKVDISVGKNWQK 896


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/689 (16%), Positives = 193/689 (28%), Gaps = 156/689 (22%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
            QA I   A A             +                      +   L   L  E 
Sbjct: 426 MQADICGIALALSPNEAAYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEA 485

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLA-LNFSEH 121
           V+    +  F  +L  +    +I  +      +++       S  +        L     
Sbjct: 486 VLKTGFDIKFAAVLLAQH---NITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHEMI 542

Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKRLI 178
                 G  +  I+        +  Y    A+  ++ W +F    +   E    +++ L 
Sbjct: 543 AHADIVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFK--ARLISERMNNVYESL- 599

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                ER L  +   +  RG  ID  ++ +L    AQ   +L+ +I ++  G   +    
Sbjct: 600 -----ERPLIDVLARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIA-GEDINPGSP 653

Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLN 293
             L   +F   G+     ++     T  SIL             IL+    S       +
Sbjct: 654 KQLGDVMFGKMGLPGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKSTYTD 713

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L   +    +   T     A+ TGR S      QN+P                      
Sbjct: 714 ALPTHLLPQTQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 751

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T 
Sbjct: 752 --VRTEDGRKIRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTA 809

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F  PI  +  E R   K +                    G+                
Sbjct: 810 SEMFGVPIKDMPGEVRRRAKAINF--------------GIIYGIS--------------- 840

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A +  +         K +  +  G+        +       
Sbjct: 841 ---------------AFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGY 885

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                           R+  Y D+K     L        R    
Sbjct: 886 VTTLF--------------------------GRKCHYPDIKASNPSLRAF---NERAAIN 916

Query: 594 GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGT 646
                    Q  + DI+   M          K    ++L VHDE+V E PD+    ++  
Sbjct: 917 ARL------QGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDKTLPV 970

Query: 647 LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
           +  +M +   P+ A  +PL+ +   A  +
Sbjct: 971 IREVMEQAPFPATALSVPLRVDARAADNW 999


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/644 (15%), Positives = 185/644 (28%), Gaps = 143/644 (22%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + ++L +    + +    H+        K   GI++ +     T + A       S  
Sbjct: 371 ETVVNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELENV-IFDTFIAAYILEPTRSTY 428

Query: 111 NACLALNFSEHLTK----------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                   SE   K           + GK L       S +     C  A +        
Sbjct: 429 TISE---LSEDKLKQSITPVEILYDKHGKRLEQGQDVSSSEV----CAAAVNAIYGLTQK 481

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                      EL+ ++      E  L  +   +  RG+++D++ +    + +      L
Sbjct: 482 LRPIIRDNGQDELYYKI------ELPLVEVLANMELRGFKVDVENLKAYSKELDSRLVIL 535

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277
           + +I  +  G   +      L + LF   G+ +   ++    T   +L   +      + 
Sbjct: 536 ENEIY-MQAGETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTSAEVLEQLSYKHEIVER 594

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           IL             + L   +  DG++         + TGR S      QN+P      
Sbjct: 595 ILEYRQLMKLKSTYADGLLSVLEQDGKIHSNFNQTV-TATGRISSTEPNLQNIP------ 647

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   I  ++   L+ AD + IE RVLA I G+ 
Sbjct: 648 ------------------VKLEMGRKIRKVFIPTNSDYVLLDADYSQIELRVLAHITGDP 689

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF N EDI+ TT +K F  P ++VS   R+  K +   + Y  G       +    
Sbjct: 690 NMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIG-----DFSLSKD 744

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           + + +           + + + + +     ++  EF     L            R     
Sbjct: 745 IGVTKKEARKYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNR---------RRYLPE 795

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +     ++                                                  G+
Sbjct: 796 LKSSNFNMRS-----------------------------------------------FGE 808

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHD 630
              +NT                    Q  + DI+   M          K    ++L VHD
Sbjct: 809 RVAMNTPI------------------QGSAADIIKISMVKVYTELKKRKLKSKLILQVHD 850

Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ ET  +    V   L   M         +PL  +      +
Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/689 (14%), Positives = 188/689 (27%), Gaps = 156/689 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA +   A +             +                          L   L    
Sbjct: 446  MQADLCGVALSLAPNDACYVPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSG 505

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121
            ++ +  +  F  ++  +  GI +         +++           L++        +  
Sbjct: 506  ILKIGFDVKFTAVMLAQH-GITLR--NTDDAQLISYVLDAGRGSHGLESLAERWFGHAML 562

Query: 122  LTKMEEG--KALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  G  K  I         + P         ++ W++       +   T  +++ L 
Sbjct: 563  KEGELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAEHMTT--VYETL- 619

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 ER L  +   +  RG  ID  ++ +L    AQ   +++ +I ++    + +    
Sbjct: 620  -----ERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAGEPV-NVGSP 673

Query: 239  YALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
              +   LF    +     ++      T + +   +         IL     S       +
Sbjct: 674  KQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQVSKLKSTYTD 733

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L E V+       T     A+ TGR S      QN+P                      
Sbjct: 734  ALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 771

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T 
Sbjct: 772  --VRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTA 829

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            ++ F  PI  +  E R   K +                    G+                
Sbjct: 830  SEMFGVPIKGMPSEIRRRAKAINF--------------GIIYGIS--------------- 860

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                               A +  +         K +  +  G+     +  +       
Sbjct: 861  ---------------AFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDFCRQHGY 905

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                            R+  Y D+K   + +        R    
Sbjct: 906  VTTLF--------------------------GRKCHYPDIKASNASVRAF---NERAAIN 936

Query: 594  GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGT 646
                     Q  + DI+   M          K    ++L VHDE++ E PD     ++  
Sbjct: 937  ARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPV 990

Query: 647  LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            +  +M     P+    +PL  +   AK +
Sbjct: 991  VQHVMQDAPFPAVLLSVPLHVDARAAKNW 1019


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 96/697 (13%), Positives = 183/697 (26%), Gaps = 157/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MPS 55
           ++  D+ET     + K               + +W                      M +
Sbjct: 377 QVAFDVETT-DIDVMKAVP---------VGFSLSWKAGEAWYVPLVAGGKTVSNEKAMKA 426

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
            + ++L +  +  +  N  ++  +  +  G+ I       T V A          ++   
Sbjct: 427 VVKKHLENPALGVIGQNLKYDYKVMARW-GVRIA-NPVFDTMVAAWLLDSASGIYNMDKL 484

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L +          K  +                            +Y   D + T 
Sbjct: 485 ADKYLGYVTITYDQVVPKGAL------------------FSDVPLDKAVQYAAEDADVTW 526

Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            L++   P+           D E  L  +   +   G R+D+D ++   E I    +K+ 
Sbjct: 527 RLYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKIT 586

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLI 278
            +I +L      +      L+  LF   G+ +   +     T    L           LI
Sbjct: 587 REIYELCGHEF-NINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPALI 645

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L+           ++ L E V  + GR+  T    G + TGR +      QN+P      
Sbjct: 646 LDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTG-TATGRLASRNPNLQNIP------ 698

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +RS  +   G   + AD A IE  VLA + G++ 
Sbjct: 699 ------------------IRNDDGRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEG 740

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             +AF  G+D++  T +  FN   + V+ +QR I K +   + Y               L
Sbjct: 741 LREAFLAGQDVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTFRLSNE-----L 795

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +          S F+ +   ++     + +  E      + G    +           +
Sbjct: 796 AISHSQAAEFIDSYFKRYHGVKTFVDETRKKAEETGFVSTMFGHERHV---------PEI 846

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +    G   VV                                  +L    +    
Sbjct: 847 RSSNRMEKSGAERVVVNTIIQGTAADI---------------------MKLAMLRI---- 881

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                 +  L         L                                  ++ E  
Sbjct: 882 ------SRSLKDSGINARLL-----------------LQVHDE-----------LIFEVA 907

Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 +  L    M K       +PL++       +
Sbjct: 908 SGQEEKLSVLVKDAMEKAVK--LSVPLRSSVETGASW 942


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 94/700 (13%), Positives = 190/700 (27%), Gaps = 164/700 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             + ID ET S               A +   + ++ +          +  +  +     
Sbjct: 340 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKVYIEKHYII 389

Query: 61  -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113
                L       +  N  F+  + K   G D P   +  T + A         SL    
Sbjct: 390 QKFNNLFKSKPKIIGQNYKFDYKILKNN-GFD-PIPPYFDTMIAAYLIDTNSKVSLDFLA 447

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L       +    K                         + ++   Y   D + T  
Sbjct: 448 EKYLMHKNIKYEDVIQKN------------------DNFAHISLEMATSYSSEDADITFR 489

Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           LF                 + E     +   + + G  +D + + +  + + +E + ++ 
Sbjct: 490 LFNVFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIEN 549

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLILN 280
           +I+K       +      +   LF    + L D  +   T   +L        + + ++ 
Sbjct: 550 EIIKSIGIDF-NLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIK 608

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       + L+E ++    RL         + TGR +      QN+P        
Sbjct: 609 HRQIAKLKSTYTDNLTELINYKTNRLHTNFIQTK-TATGRITSINPNLQNIP-------- 659

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R      NG   + AD + IE  +LA ++ ++  I
Sbjct: 660 ----------------IKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLI 703

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           KAF N +DI+  T +K F     +++   R I K +                     +  
Sbjct: 704 KAFENNKDIHAETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSD 749

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +                               A +  +     +    ++   +  + +
Sbjct: 750 FRL------------------------------AKELGITKEEAKGFINSYFDSYPKIKE 779

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              +                                        S RR    ++  +   
Sbjct: 780 FITNQINFVRNTGYSETI--------------------------SKRRRYIKEINSNNYL 813

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633
             +A     R          +I+Q  + DI+   M          K    I+L VHDE++
Sbjct: 814 ERSAA---ERIAI------NSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEML 864

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E+P         +   M +  ++   LPL+A     K +
Sbjct: 865 IESPIEEENETKKILKNMMET-AYTLSLPLRANIETGKSW 903


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 189/699 (27%), Gaps = 151/699 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---------SAM- 53
           + +D ET S   +             +   + +                         + 
Sbjct: 357 VAVDTETASLDSVT----------GRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQIA 406

Query: 54  ----PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106
                  L     D+ V+ V HN  ++  +  +     +    +  T +++         
Sbjct: 407 MGDALERLGALFADDAVLKVGHNLKYDIGVLAQH---GVTVAPYDDTLLMSFALDAGKHQ 463

Query: 107 SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             L       L+      K     GK+ I+        +  Y    A             
Sbjct: 464 HGLDELAKLHLDHVCLSFKDVCGTGKSQISFAEVQLDRATEYAAEDAEVAWRLWK----- 518

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +    E   R+  + D  R L  + + +   G  +D D + KL    A E  +++ +
Sbjct: 519 LLKLRLPLEGGTRVYEMVD--RPLAAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGE 576

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLI 278
           I  L      +      L   LF   G+      +          +             I
Sbjct: 577 IHALAGQPF-AIGSPRQLGEILFDKMGLKGGRKGKSGDWSTDQNELERLERDGVPIARKI 635

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L     +       + L E V+ + GR+  +    GA +TGR S      QN+P      
Sbjct: 636 LEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGA-QTGRLSSTDPNLQNIP------ 688

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R   IA+ G  L+ AD + IE R+ A +A    
Sbjct: 689 ------------------IRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPE 730

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             +AFA G+DI+  T  + F     +V+++ R   K +  ++ Y               L
Sbjct: 731 LKEAFARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYG-----ISRWGLAGRL 781

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++         +  FE +     +     +        + L G                +
Sbjct: 782 EITPDEAQALISRYFERFPGISDYISDTLETARARGYTETLFGRK---------TWFPRI 832

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               ++          E  +I+A        L+ R   R    +  +             
Sbjct: 833 KAANQN-----ERAGSERAAINAPIQGTSADLIKRAMARMPGALADAGL----------- 876

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                                         D+  + +                 +V E P
Sbjct: 877 -----------------------------ADV--KMLLQVHDE-----------LVFEAP 894

Query: 638 DTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
           +    + G +   +M     P+    +PL+ E    K +
Sbjct: 895 EDKAAAAGEVIRAVMMGAAEPALKLSVPLEVEIGTGKSW 933


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 96/691 (13%), Positives = 199/691 (28%), Gaps = 151/691 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET               ++A I   ++  ++        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366

Query: 56  DLLQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112
              + +        + HN  ++  + +    +++  +++  T +LA         ++ + 
Sbjct: 367 SAKKAIEAIFNHFVIGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDL 425

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L L N+     +    K       +           +     A+     Y         
Sbjct: 426 ALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNLET 479

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L +        E D   +   + + G ++D + +  L +    E K L E+I       
Sbjct: 480 PLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TLCED 535

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      +   LF    +      +    T + +L+           IL+    +   
Sbjct: 536 RFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLY 595

Query: 289 ILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 L +      + R+  +    G + TGR S      QN+P   +  +        
Sbjct: 596 STYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------ 648

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +SC +A +G   +  D + IE R+LA  + ++  + AFAN E
Sbjct: 649 ------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDE 690

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T    F     + + E R++ K +   L Y  G                      
Sbjct: 691 DIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---------------------- 724

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                 Y   +   K+     +   + +      + + ++ +  
Sbjct: 725 ----------------------YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKN 762

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            IV  S R+           Y +   ++
Sbjct: 763 EAKQNG--------------------------FIVTLSGRKR----------YFDFENAK 786

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643
            M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D    +
Sbjct: 787 PMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCEN 846

Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V     +M         + LK     AK +
Sbjct: 847 FVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 201/694 (28%), Gaps = 157/694 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET               ++A I   ++  ++        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366

Query: 56  DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
              + +    V+     + HN  ++  + +    +++  +++  T +LA         ++
Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNM 422

Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +  L L N+     +    K       +           +     A+     Y      
Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKN 476

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               L +        E D   +   + + G ++D + +  L +    E K L E+I    
Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      +   LF    +      +    T + +L+           IL+    +
Sbjct: 533 CEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELA 592

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                    L +      + R+  +    G + TGR S      QN+P   +  +     
Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +SC +A +G   +  D + IE R+LA  + ++  + AFA
Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFA 687

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N EDI+  T    F     + + E R++ K +   L Y  G                   
Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                    Y   +   K+     +   + +      + + ++ 
Sbjct: 725 -------------------------YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEK 759

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                   IV  S R+           Y +  
Sbjct: 760 VKNEAKQNG--------------------------FIVTLSGRKR----------YFDFE 783

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640
            ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D  
Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             + V     +M         + LK     AK +
Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 102/692 (14%), Positives = 195/692 (28%), Gaps = 163/692 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD 56
             +  D ET S             E   I   ++A++                   +P  
Sbjct: 320 KIVAFDTETDSL------------ENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367

Query: 57  -----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSL 109
                + + L       + HN  F+  + KK  G++I       T +LA       P  L
Sbjct: 368 TALKAIQKIL---DKKVIGHNLKFDFKMLKKY-GLEI-PTPHADTMILAWILDPDSPVGL 422

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L+      K   GK       K   +    +  +     A      Y     +
Sbjct: 423 DSVAKRYLDHQNIKFKEVIGKR------KNFSEVDIQEAAKYAAEDALISLKLYEILKEK 476

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E+      + + E     L   I  +G ++D++ + KLQ    ++ + L ++I +  
Sbjct: 477 LWEEVK---WDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQEIYRYA 533

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                + + T  L   LF +  + +   ++    T + +L+    T    + +L      
Sbjct: 534 GSEF-NIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLLEYRKLD 592

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                 +  L E      + ++       G + TGR S      QN+P            
Sbjct: 593 KLLSTYIIPLQEYAKKDPNHKIYTNFLQTG-TATGRLSSKNPNLQNIP------------ 639

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A    + V  D + IE R+LA  + ++  I AF 
Sbjct: 640 --------------TSTDINIRDAFVAEK--EFVSLDYSQIELRLLAHFSKDEHLINAFL 683

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             +DI++ T  K F    +  +KE R + K +   L Y  G                   
Sbjct: 684 EDKDIHLETAVKIFG---ENRAKEYRPVAKSINFGLIYGMGP------------------ 722

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      + +    +     +   + + A    V    ++
Sbjct: 723 --------------------------KKLSETINVSTKEAKEFIEKYFASFPTVKTFLEN 756

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                         +  RR  +                                     A
Sbjct: 757 TKIEAREKGYVETLLKRRRFFDF------------------------------------A 780

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GYDIVLTVHDEIVSETPDTPY 641
            +       +  +    I Q  + DI+ + M    +      ++L +HDE++ E      
Sbjct: 781 AANARTLANFEREAVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIFEI--DSR 838

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +M         +PLK      KR+
Sbjct: 839 DEAYEYKKIMQNVFK--LEVPLKVGISFGKRW 868


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
             Y E+  I   +   ++         + +       +++ ++       +S   R +  
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDTAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383

Query: 82  -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137
            +  GI++    +  T + A      +S  +             ++  E          K
Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
           G+  + P +   + H+    L  +  +  +    E   +L    + E  L L+   +   
Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D+D + ++ E +  + K+ +E I ++      +      L + LF   G+ +V  +
Sbjct: 496 GVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L          D IL            +  L +    D     T      
Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P                                +R   + S   
Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             +  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D+V+   R   K
Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     SQN                            
Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +           +    QGV    +D  +          +    R   +P L  R 
Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                 + + +NT                   +Q  + DI+ + 
Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M +             ++L VHDE++ E P      +  L   +M      A  +PLK +
Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869

Query: 667 GYEAKRY 673
                 +
Sbjct: 870 FASGPSW 876


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 91/663 (13%), Positives = 196/663 (29%), Gaps = 138/663 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             I        +E    + R E +       +++ DE+ +   +++    +  ++  GID
Sbjct: 330 GEIIGFGLK--NEKGLFFLRAEDALSSEAFKKWVEDESKIKHVYDAKRSIVALRRY-GID 386

Query: 88  IPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARF--CKGSID 141
           +    +    +++       ++++        ++      +   GK    +    K   +
Sbjct: 387 LRGTDF-DLLLVSYLLNPSDTVEDFASVAKTHDYGNVETDEAVYGKGAKRKLPEEKRYAE 445

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                    + +             +E   +L          E  L L+   +   G ++
Sbjct: 446 HISRKAEAIDALCEPCTKALKNNGQLELFEQL----------ELPLSLILADMEYTGVKV 495

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D D + ++ E       ++++ I  +      +      L + LF   G+ ++  ++   
Sbjct: 496 DTDRLKEMGEEFKLRLHEIEQRIYSMAGTEF-NINSPKQLGVILFEKMGLPVIKKTKTGY 554

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+           +  L + V  DG++         ++TG
Sbjct: 555 STSADVLEKLEPAHEIVREILHYRQLGKLQSTYIEGLLKVVHQDGKVHTRFNQA-LTQTG 613

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 614 RLSSTDPNLQNIP------------------------IRMEEGRKIRQAFVPSEEGWLIF 649

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            +D + +E RVLA I+G++  I+AF  G DI+  T  + F+   ++V+ E R   K +  
Sbjct: 650 SSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNF 709

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 710 GIVY-----GISDYGLSQNL---------------------------------------G 725

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         K + A +  V +   ++            S   +R   +P +  R     
Sbjct: 726 ISRKEAGEFIKRYFASYPRVKEYMDEIVREAKQKGYV--STLLKRRRYLPEITSRNFNL- 782

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 783 --------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDM 810

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  K    ++L VHDE++ E P+     +  +   +M      A   PLK +    
Sbjct: 811 AKRLKKEKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHAVDLAA--PLKVDSAYG 868

Query: 671 KRY 673
             +
Sbjct: 869 PTW 871


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
             Y E+  I   +   ++         + +       +++ ++       +S   R +  
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383

Query: 82  -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137
            +  GI++    +  T + A      +S  +             ++  E          K
Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
           G+  + P +   + H+    L  +  +  +    E   +L    + E  L L+   +   
Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D+D + ++ E +  + K+ +E I ++      +      L + LF   G+ +V  +
Sbjct: 496 GVKVDVDRLKRMGEELGTKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L          D IL            +  L +    D     T      
Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P                                +R   + S   
Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             +  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D+V+   R   K
Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     SQN                            
Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +           +    QGV    +D  +          +    R   +P L  R 
Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                 + + +NT                   +Q  + DI+ + 
Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M +             ++L VHDE++ E P      +  L   +M      A  +PLK +
Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869

Query: 667 GYEAKRY 673
                 +
Sbjct: 870 FASGPSW 876


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 190/701 (27%), Gaps = 170/701 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------AM 53
               D ET S +             A I   +++ +                        
Sbjct: 331 IFSFDTETTSLE----------VRSAKIVGFSFSVNGVDSYYVPIAHNYLGVEEQVSYEC 380

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPS--SLK 110
             + ++Y+       + HN  ++  + K      +    +   + +LA      +  +L 
Sbjct: 381 AKEFIEYIF-GCKYVIGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQSDALCNLD 439

Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                  N      K    K                           Q   EY   D  A
Sbjct: 440 FLMKKYFNHEMIHYKDIVHKK------------------ENFSQILIQYACEYASEDAAA 481

Query: 170 TRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             +L+ +L  L D          E         +   G +IDL+   +L     +   ++
Sbjct: 482 CYQLYFKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQI 541

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDL 277
            E+I  L +    +      L   LF    +     ++    T +S+L+    T      
Sbjct: 542 SEEIFALANKRF-NLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPK 600

Query: 278 ILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
           IL            +  LSE   +D   R+  +    G + TGR S      QN+P    
Sbjct: 601 ILEYREFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTG-TSTGRLSSKNPNLQNIP---- 655

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA     LV  D + IE R+LA  + +
Sbjct: 656 --------------------VKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSED 695

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  I+AF    DI++ T  K F    + +++E+RAI K +   L Y  G           
Sbjct: 696 EAMIEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGP---------- 742

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                              + +   K+     +   + +     
Sbjct: 743 ----------------------------------KKLSETLKITFQEAKTYIQNYFTSFP 768

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V +  K+  E           +   R  +   +   +    +                 
Sbjct: 769 TVKEFLKNQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREG-------------- 814

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIV 633
                                    I Q  + DI+   M   TK      ++L VHDE++
Sbjct: 815 ----------------------INAIFQGSAADIIKMAMNAITKANLESKLLLQVHDELI 852

Query: 634 SETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E P          +  +M    +    +PLK      + +
Sbjct: 853 FEAPKEIAKKESEEIAKIMENITT--LKVPLKCTISIGENW 891


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 194/699 (27%), Gaps = 157/699 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53
           + +D ET S   L             +   + + D                     ++ +
Sbjct: 334 VALDTETNSLDQLKT----------RLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEV 383

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111
              +  +L  E    +  N+ ++  +F    GI +   +   T VLA          L+ 
Sbjct: 384 LEAMRSWLESEQKTKILQNAKYDMHVFAN-EGIVLKGIK-HDTMVLAYVIDTNQRVGLEA 441

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                LN      +   GK                               +Y   D + T
Sbjct: 442 LSLKYLNRKGLSYEEICGKGAK---------------AITFDYVPLDQATQYACEDADFT 486

Query: 171 RELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L   L+P  +           E  +  +   +   G  ID   +L   E+I+    KL
Sbjct: 487 FHLLTELLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKL 546

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276
           + +I  L      +      L   LF    ++    +      T +  L    +      
Sbjct: 547 ESEIFNLAGEEF-NINSPKQLSEILFTKLKLETQGKTRTGVISTNEDALEKLALDHPIAV 605

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            +L   + S       + L   ++   GR+            GR S      QN+P    
Sbjct: 606 HLLEYRSLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLS-GRLSSFDPNLQNIP---- 660

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR   +A +G KL+ AD + +E R++A I+ +
Sbjct: 661 --------------------IRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISND 700

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  +KAF  G DI+ +T ++ F  P+ +V   QR   K +   L Y  G       A   
Sbjct: 701 EGMLKAFKEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMG-----AFALAN 755

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L + + +        F+ + +       ++ Q  +    + + G    +          
Sbjct: 756 NLGISRETAQNYIYKYFDRFPKVRKFMDDIKIQASQDGYVETIYGRRIYI---------P 806

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           G+    K   +     V     +       +   ++  HK      L S           
Sbjct: 807 GIQDS-KGARKAALERVAINAPVQGSAADIIKMAMISVHKWISQNKLNSR---------- 855

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                                            I+             +VL VH      
Sbjct: 856 ---------------------------------II----LQVHDE---LVLEVH------ 869

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++    +   L  LM         +PL+A+      +
Sbjct: 870 --ESEIEILKLKLPKLMEDVAK--LDVPLEAQVNVGSNW 904


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 200/694 (28%), Gaps = 157/694 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET               ++A I   ++   +        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQ 366

Query: 56  DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
              + +    V+     + HN  ++  + +   G+++  +++  T +LA         ++
Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNM 422

Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +  L L N+     +    K       +           +     A+     Y      
Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKN 476

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               L +        E D   +   + + G ++D + +  L +    E K L E+I    
Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      +   LF    +      +    T + +L+           IL+    +
Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELA 592

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                    L +      + R+  +    G + TGR S      QN+P   +  +     
Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +SC +A +G   +  D + IE R+LA  + ++  + AFA
Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N EDI+  T    F     + + E R++ K +   L Y  G                   
Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                    Y   +   K+     +   + +      + + ++ 
Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                   I   S R+           Y +  
Sbjct: 760 VKNKAKQNG--------------------------FITTLSGRKR----------YFDFE 783

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640
            ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D  
Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             + V     +M         + LK     AK +
Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
             Y E+  I   +   ++         + +       +++ ++       +S   R +  
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383

Query: 82  -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137
            +  GI++    +  T + A      +S  +             ++  E          K
Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
           G+  + P +   + H+    L  +  +  +    E   +L    + E  L L+   +   
Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D+D + ++ E +  + K+ +E I ++      +      L + LF   G+ +V  +
Sbjct: 496 GVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L          D IL            +  L +    D     T      
Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P                                +R   + S   
Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             +  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D+V+   R   K
Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     SQN                            
Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +           +    QGV    +D  +          +    R   +P L  R 
Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                 + + +NT                   +Q  + DI+ + 
Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M +             ++L VHDE++ E P      +  L   +M      A  +PLK +
Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869

Query: 667 GYEAKRY 673
                 +
Sbjct: 870 FASGPSW 876


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 202/693 (29%), Gaps = 155/693 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM--- 53
           S +  D ET               ++A I   ++   +        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQ 366

Query: 54  -PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110
                ++ + +  V  + HN  ++  + +   G+++  +++  T +LA         ++ 
Sbjct: 367 SAKKAIELIFNHFV--IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMD 423

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +  L L N+     +    K       +           +     A+     Y       
Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 477

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L +        E D   +   + + G ++D + +  L +    E K L E+I     
Sbjct: 478 EAPLLELAKNC---EFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIY-TLC 533

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      +   LF    +      +    T + +L+           IL+    + 
Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDYRELAK 593

Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   L +      + R+  +    G + TGR S      QN+P   +  +      
Sbjct: 594 LYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 648

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               +SC +A +G   +  D + IE R+LA  + ++  + AFAN
Sbjct: 649 --------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFAN 688

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T    F     + + E R++ K +   L Y  G                    
Sbjct: 689 DEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG-------------------- 724

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                   Y   +   K+     +   + +      + + ++ +
Sbjct: 725 ------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETV 760

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                              I   +SR+           Y +   
Sbjct: 761 KNEAKQNG--------------------------FITTLNSRKR----------YFDFEN 784

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641
           ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D   
Sbjct: 785 AKPMQIAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIFEVKDDLC 844

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + V     +M         + LK     AK +
Sbjct: 845 ENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
             Y E+  I   +   ++         + +       +++ ++       +S   R +  
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383

Query: 82  -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137
            +  GI++    +  T + A      +S  +             ++  E          K
Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
           G+  + P +   + H+    L  +  +  +    E   +L    + E  L L+   +   
Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D+D + ++ E +  + K+ +E I ++      +      L + LF   G+ +V  +
Sbjct: 496 GVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L          D IL            +  L +    D     T      
Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373
           ++TGR S      QN+P                                +R   + S   
Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             +  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D+V+   R   K
Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     SQN                            
Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +           +    QGV    +D  +          +    R   +P L  R 
Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                 + + +NT                   +Q  + DI+ + 
Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M +             ++L VHDE++ E P      +  L   +M      A  +PLK +
Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869

Query: 667 GYEAKRY 673
                 +
Sbjct: 870 FASGPSW 876


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 202/694 (29%), Gaps = 157/694 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET               ++A I   ++  ++        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366

Query: 56  DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
              + +    V+     + HN  ++  + +   G+++  +++  T +LA      S  ++
Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSSRVNM 422

Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +  L L N+     +    K       +           +     A+     Y      
Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLDFLKN 476

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               L +        E D   +   + + G +++ + +  L +    E K L E+I    
Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIY-TL 532

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      +   LF    +      +    T + +L+           IL+    +
Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILDYRELA 592

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                    L +      + R+  +    G + TGR S      QN+P   +  +     
Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +SC +A +G   +  D + IE R+LA  + ++  + AFA
Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N EDI+  T    F     + + E R++ K +   L Y  G                   
Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                    Y   +   K+     +   + +      + + ++ 
Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                   I   S R+           Y +  
Sbjct: 760 VKNEAKQNG--------------------------FITTLSGRKR----------YFDFE 783

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640
            ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D  
Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             + V     +M         + LK     AK +
Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 200/694 (28%), Gaps = 157/694 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET               ++A I   ++   +        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQ 366

Query: 56  DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
              + +    V+     + HN  ++  + +   G+++  +++  T +LA         ++
Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNM 422

Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +  L L N+     +    K       +           +     A+     Y      
Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYISLRFYLYFLKN 476

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               L +        E D   +   + + G ++D + +  L +    E K L E+I    
Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      +   LF    +      +    T + +L+           IL+    +
Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELA 592

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                    L +      + R+  +    G + TGR S      QN+P   +  +     
Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +SC +A +G   +  D + IE R+LA  + ++  + AFA
Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N EDI+  T    F     + + E R++ K +   L Y  G                   
Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                    Y   +   K+     +   + +      + + ++ 
Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                   I   S R+           Y +  
Sbjct: 760 VKNKAKQNG--------------------------FITTLSGRKR----------YFDFE 783

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640
            ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D  
Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             + V     +M         + LK     AK +
Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 105/688 (15%), Positives = 202/688 (29%), Gaps = 143/688 (20%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS----------DLLQYLR 62
              +        A  + +   ++ ++D+           +              L   L 
Sbjct: 326 VVSIQVETTRKDAMASDLAGLSFGFEDDGAWYVPLGPDGSEGDGRLPAAVALAALEPVLG 385

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNF 118
                 + H+     I+FKK  GI++    +  T V A           +       L  
Sbjct: 386 RSRPAKIGHDLKTAWIVFKKH-GIELRGIAF-DTMVAAYLLDPGKQNYGIDRVAAECLGE 443

Query: 119 SEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +    +   GK    +         +  Y C  A+  +      +    +   T ELF++
Sbjct: 444 NIDSYEDVTGKGKSQVGFDTIDIGRAAAYSCAAADAARRMHPVLKRKLDESRLT-ELFEK 502

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           +      E  L  +   +  RG   D + +  L     +   +  + I  L      + +
Sbjct: 503 I------ELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAKEKF-NIQ 555

Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF   G+ +V  ++    T  ++L    +     D +L     +       +
Sbjct: 556 SPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVFRTLAKLKGTYAD 615

Query: 294 TLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L + ++   GR+  +     A  TGR S      QN+P                     
Sbjct: 616 ALGKLINPRTGRIHTSYNQTVA-ATGRLSSSDPNLQNIP--------------------- 653

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +RS  I + G  L+ AD + IE R+LA  + ++  ++AF + EDI+  T
Sbjct: 654 ---IRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRT 710

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+ F     +V+ E R   K +                    G+     +Q +      
Sbjct: 711 AAEMFGVSPIEVTPEMRRQAKTINF--------------GIIYGMGPFGLAQRL------ 750

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                   ++           +   ++GV +      E    + 
Sbjct: 751 ------------------------RISTKTARTAIDKYFQGYRGVRRFIDTTIELARRLG 786

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                +                           RR    +++     +     +L     
Sbjct: 787 YSETLL--------------------------GRRRFIPELQSRNKTIRQLGERL----- 815

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGT 646
                    +Q  + D++ + M +A       G    ++L VHDE+V ETP     +   
Sbjct: 816 ----AINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQE 871

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L   +M     W   +PLK E      +
Sbjct: 872 LVRRVMEDV--WKLDVPLKVELGWGDNW 897


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 192/701 (27%), Gaps = 165/701 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
           + + ID ET S               A +   + ++ +          +  +  +     
Sbjct: 341 NYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIETKGKIYIEKHYII 390

Query: 61  -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113
                L       +  N  F+  + K      IP   +  T + A         SL    
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L       +    K                         + ++   Y   D + T  
Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSCEDADITFR 490

Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           LF                 + E     +   + + G  +D + + +  + + +E + ++ 
Sbjct: 491 LFNIFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIEN 550

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279
           +I+K       +      +   LF    + L          +K + S     +   +LI 
Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIK 609

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +R  +   +    + L E ++    RL  +      + TGR +      QN+P       
Sbjct: 610 HRRIAKLKST-YTDNLIELINYKTNRLHTSFIQT-RTATGRITSINPNLQNIP------- 660

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R      NG   + AD + IE  +LA ++ ++  
Sbjct: 661 -----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDETL 703

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           IKAF N +DI++ T +K F                                         
Sbjct: 704 IKAFENNKDIHIETASKLFKI--------------------------------------- 724

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                +  K T       ++ +  +  +      A +  +     +    ++   +  + 
Sbjct: 725 ----EEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIK 780

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +   +              +  RR                           Y       +
Sbjct: 781 EFIINQINFVKNTGYSETILKRRR---------------------------YIKEINSNN 813

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632
           YL    S   R          + +Q  + D +   M          K    I+L VHDE+
Sbjct: 814 YL--ERSAAERIAI------NSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHDEM 865

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + E+P      V  +  +M +  ++   LPL+A     K +
Sbjct: 866 LIESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 905


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 191/707 (27%), Gaps = 162/707 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA--WDDE-------PVKLWDRTEQS--- 51
             I IET     +          QA I   ++A    DE                     
Sbjct: 351 FSISIETTCADYM----------QAKIVGFSFALQVADENSAEITIEAFYLPLAHDYIDA 400

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                  A    L   L       V  N  F R +  +  GI++    +    + +    
Sbjct: 401 PAQLEYLATLDKLKPLLEKIAPQKVVFNLKFMRSVL-RLEGINLQGVAF-DPMLESYLLD 458

Query: 105 LPSSLKNAC---LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLF 159
                  A      L       +   GK             D  PY            L 
Sbjct: 459 STGKHDKASLTLKYLQIEIASYEAIAGKGKKQLPFNQVSIKDITPYVGEHVELSLRLHLL 518

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                        L++      D E  L ++   +   G  ID  ++      I +   +
Sbjct: 519 LWPKLEKFPKLVALYE------DIELPLAIVLSDVELGGVEIDATMLGAQSVEIGKRLLE 572

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275
           ++++          +      L+  LF    + +       +  T + +L     T    
Sbjct: 573 IEKEAYIEAGKEF-NLSSPKQLQSILFEDLELPILKKTPKGAPSTGEEVLVELAETYKLP 631

Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L++     S       + L + ++   GR+  +      + TGR S      QN+P   
Sbjct: 632 KLVIEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAV-TVTGRLSSSDPNLQNIP--- 687

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA  G K+V AD + IE R++A ++ 
Sbjct: 688 ---------------------IRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQ 726

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   ++AF+ G DI+  T ++ F+  +D+V+  QR   K +                   
Sbjct: 727 DKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINF--------------GLI 772

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+                                   A + K+  +  +L    +  ++
Sbjct: 773 YGMS------------------------------AFGLAKQLKISRSDAKLYMDKYFHRY 802

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            GVL   +   +                                 +     RRL    + 
Sbjct: 803 PGVLTYMQTTRDKAREQG--------------------------FVETILGRRLQLPHIN 836

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627
                         R            +Q  + DI+ + M +          +   +++ 
Sbjct: 837 SRN---GILKKASERAAINAP------MQGTAADIIKKAMLDVAAWVEKQAPSQVQLLMQ 887

Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V    +    +    +  +M K       +PL AE      +
Sbjct: 888 VHDELVFCIKEDQVENYTCIIQEIMAKAV--ILDVPLLAEVGVGNNW 932


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 93/696 (13%), Positives = 186/696 (26%), Gaps = 143/696 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWD--------RTE 49
           ++ ID+ET    PL             I   A AW                        +
Sbjct: 376 QICIDLETTGLDPLRD----------EIVGWAIAWAAQHGQPGRAVYLPVLGPPGSVLLD 425

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGL--- 105
            +A+   L   L +     +  N  F+ +  +K   + I      + T V          
Sbjct: 426 GTAVVQTLKPILENPQCQLINQNVKFDLLAMRK---VGIRPATIGLDTMVGDYLLDAGAR 482

Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +L+      L+ +        G     +           +    +     ++      
Sbjct: 483 SHNLEVLGQKYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDAELVVRMAPIIES 542

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  EA      +L    + E+ L  +   +  +G ++D+  + +  + ++    +L  +I
Sbjct: 543 QLQEAGL---WKLYD--EVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARLMSEI 597

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +L      +      LR  LF    + +   ++    T + +L            I   
Sbjct: 598 HELAGREF-NIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPLPAKITEH 656

Query: 282 LASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +      L+ L   V    GR+  +     A  TGR S      QN+P         
Sbjct: 657 RHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVA-ATGRLSSSDPNLQNIP--------- 706

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +      +LV AD + IE R+LA  + +   +
Sbjct: 707 ---------------IRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALV 751

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF +GEDI+    A+     ++ V+ + R I K +   + Y               L +
Sbjct: 752 SAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSP-----YGLSAALGI 806

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV-KKAWRAKHQGVL 518
            + +        F  +    +    + D+         ++G    +   +  R +++   
Sbjct: 807 SREAATTFIDEYFTRYAGVTTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRN-- 864

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                                +                          ++    V     
Sbjct: 865 ------RNMAERTGINTVIQGSAADLI---------------------KMAMIRVHHRLE 897

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N                                +               DE+V E P 
Sbjct: 898 RENHPGQL---------------------------LLQIH-----------DELVLEAPA 919

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                +G L    MTK       +PL+ +      +
Sbjct: 920 HLAEELGALVSEEMTKALP--LDVPLEVDVAIGTNW 953


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 189/702 (26%), Gaps = 170/702 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------A 52
           S    D ET S              +A I   +++ +                       
Sbjct: 331 SIFSFDTETTSLD----------VRKAKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLE 380

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPS--SL 109
              + ++ +       + HN  ++  + K      +    +   + +LA      +  +L
Sbjct: 381 CARECIEQIFQSQY-VIGHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDTLCNL 439

Query: 110 KNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   N      K   GK                           Q   EY   D  
Sbjct: 440 DFLMKKYFNHEMIHYKDIVGKN------------------ENFSNILIQHACEYASEDAA 481

Query: 169 ATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           A  +L+ +L  L D          E         +   G +IDL+  L L     ++  +
Sbjct: 482 ACYQLYFKLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQ 541

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKD 276
           + E+I  L +    +      L   LF    ++    ++    T + +L+    +     
Sbjct: 542 ISEEIFVLANKRF-NLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIP 600

Query: 277 LILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            IL    S       +  L E   SD   R+  +    G + TGR S      QN+P   
Sbjct: 601 KILEYRESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTG-TSTGRLSSKNPNLQNIP--- 656

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                   L    +R   IA     L+  D + IE R+LA  + 
Sbjct: 657 ---------------------VKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQ 695

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   I AF    DI++ T  K F    +++++E+RA+ K +   L Y  G          
Sbjct: 696 DKAMIDAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGP--------- 743

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                               + +   K+     +   + +    
Sbjct: 744 -----------------------------------KKLSETLKINFQEAKTYIQNYFTSF 768

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +    K+  E           +   R  +   +   +    +                
Sbjct: 769 PMIKNFLKEQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREG------------- 815

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDIVLTVHDEI 632
                                     I Q  + DI+   M           ++L VHDE+
Sbjct: 816 -----------------------INAIFQGSAADIIKMAMNKIMHSSLESKLLLQVHDEL 852

Query: 633 VSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + E P          +  +M    +    +PLK      + +
Sbjct: 853 IFEAPKEIASKEAKKIALIMENIAT--LRVPLKCSISIGENW 892


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 190/689 (27%), Gaps = 156/689 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA +   + A             +                        + L   L    
Sbjct: 457  MQANLCGLSLALAPGEACYIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTG 516

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121
            ++ + +N  F   +     GI +         +++           L +     L  +  
Sbjct: 517  LLKIGYNIKF-LAVLLAQHGITLQ--NVDDILLMSYALDAGRGSHKLDSLAEHVLAHAII 573

Query: 122  LTKMEEG--KALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLI 178
                  G  K  +         +  +    A+ + + W++         E    +++ L 
Sbjct: 574  SEGELIGSGKNKLTFEQVAIDRATAHAAEAADVIHRVWRVLKPRLT--AERMTAVYETL- 630

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 ER L  +   +  RG  ID  ++ +L    AQ   +++ ++ +L    I +    
Sbjct: 631  -----ERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQELAGEPI-NVGSP 684

Query: 239  YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293
              +   LF   G+     ++     T  SIL             IL     S       +
Sbjct: 685  KQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTD 744

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L   V+       T     A+ TGR S      QN+P                      
Sbjct: 745  ALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 782

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T 
Sbjct: 783  --VRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTA 840

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            ++ F  PI  +  E R   K +                    G+                
Sbjct: 841  SEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS--------------- 871

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                               A +  +         K +  +  G+     +  E       
Sbjct: 872  ---------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREFCRKNGY 916

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                      +V    R+  Y ++K   + +        R    
Sbjct: 917  --------------------------VVTLFGRKCHYPEIKASNASVRAF---NERAAIN 947

Query: 594  GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGT 646
                     Q  + DI+   M    +          ++L VHDE++ E P+     ++  
Sbjct: 948  ARL------QGTAADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAATLPV 1001

Query: 647  LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            +  +M     P+    +PL  +   A  +
Sbjct: 1002 VQHVMQDAPFPAVLLSVPLHVDARAADNW 1030


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 201/694 (28%), Gaps = 157/694 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET               ++A I   ++  ++        T         +   
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366

Query: 56  DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
              + +    V+     + HN  ++  + +    +++  +++  T +LA         ++
Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNM 422

Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +  L L N+     +    K       +           +     A+     Y      
Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKN 476

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               L +        E D   +   + + G ++D + +  L +    E K L E+I    
Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      +   LF    +      +    T + +L+       A   IL+    +
Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILDYRELA 592

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                    L +      + R+  +    G + TGR S      QN+P   +  +     
Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +SC +A +G   +  D + IE R+LA  + ++  + AFA
Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N EDI+  T    F     + + E R++ K +   L Y  G                   
Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                    Y   +   K+     +   + +      + + ++ 
Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                   I   S R+           Y +  
Sbjct: 760 VKNEAKQNG--------------------------FITTLSGRKR----------YFDFE 783

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640
            ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D  
Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             + V     +M         + LK     AK +
Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 204/658 (31%), Gaps = 131/658 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86
           I   A A  +E    + RT+ +   S   Q+L DE+       S+F+    I+  K  GI
Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTQWLEDESKKK----SVFDGKRAIVSLKWQGI 387

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            +   ++    + +       S ++               +    I  + KG+    P +
Sbjct: 388 QLRGVQF-DLLIASYLLNPSQSTEDVASI--AKTKQYTDVQSDEAI--YGKGAKQKIPDE 442

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              A H+          ++D     +  ++    +D E  L  +   +   G +ID+  +
Sbjct: 443 PVLAEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKRL 502

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++ E + ++ K+++++I +L      +      L + LF    + ++  ++    T   
Sbjct: 503 KEMGEELTEQLKEIEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAE 561

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          + IL+           +  L + V  D     T+     ++TGR S  
Sbjct: 562 VLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLSST 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R   +       +  AD +
Sbjct: 622 EPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWVIFSADYS 657

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA IA ++  I AF +  DI+  T    F+   D+V+   R   K +   +   
Sbjct: 658 QIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIV-- 715

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN                                +    
Sbjct: 716 ------------YGISDYGLSQN------------------------------LNITRKE 733

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                K +     GV Q  KD+ +          +    R   +P +  R          
Sbjct: 734 ASEFIKRYFEIFPGVKQYMKDIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL------ 785

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
                        + + +NT                   +Q  + DI+ + M +      
Sbjct: 786 ---------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLSNRLK 818

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E P      +  +   +M         +PLK + +    +
Sbjct: 819 KENMKARMLLQVHDELILEAPKEEVERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 143/644 (22%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
               ++L +    + +    H+        K   GI++ +     T + A       S  
Sbjct: 371 QEALNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELENV-IFDTFIAAYILEPTRSTY 428

Query: 111 NACLALNFSEHLTK----------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                    E   K           + GK L       S +     C  A +     +  
Sbjct: 429 TISELY---EDKLKQSITPVEILYDKHGKRLQQEQDISSSEV----CAAAVNAIYVLIQK 481

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                      EL+       + E  L  +   +  RG+++D++ +    + +      L
Sbjct: 482 LRPIIRDNGQDELYY------EIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVIL 535

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277
           + +I  +  G   +      L + LF   G+ +   ++    T   +L   +      + 
Sbjct: 536 ENEIY-MQAGETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVER 594

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           IL             + L   +  DG++         + TGR S      QN+P      
Sbjct: 595 ILEYRQLMKLKSTYADGLLSVLEQDGKIHSNFNQTV-TATGRISSTEPNLQNIP------ 647

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   I  +    L+ AD + IE RVLA I  + 
Sbjct: 648 ------------------VKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAHITDDS 689

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF   EDI+ TT +K F  P ++VS   R+  K +   + Y  G       +    
Sbjct: 690 NMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIG-----DFSLSKD 744

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           + + +           + + + + +     ++  EF     L            R     
Sbjct: 745 IGVTKKEARQYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNR---------RRYLPE 795

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +     ++                                                  G+
Sbjct: 796 LKSSNFNMRS-----------------------------------------------FGE 808

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
              +NT                    Q  + DI+   M               ++L VHD
Sbjct: 809 RVAMNTPI------------------QGSAADIIKISMVKVYNELKKRKLKSKLILQVHD 850

Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ ET  +    V   L   M         +PL  +      +
Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 192/694 (27%), Gaps = 148/694 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56
             + ID ET     L             I   ++A   +     D + ++ +  +     
Sbjct: 360 KLVCIDFETTGLDTLTD----------EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKL 409

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113
           +   L  E +  + HN  +E  +  + +   +    +  T V A          ++ +  
Sbjct: 410 VFDTLAKEDIKIIGHNLKYEYKMM-RAIDKKM-GNMYFDTMVAAYLINPSRGRYNMDDLA 467

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171
              L+++          A          D   Y C  A+       F  Y        T 
Sbjct: 468 LSYLSYNTIKYSDITDNAKKTLLDVELKDVVEYACEDAD-----ITFRFYEYFAPLLNTY 522

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L      +   E  L  +   +   G  I  + +  L E  A   +K    I +     
Sbjct: 523 NLEDLFFNV---EMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKIYEKAGEE 579

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287
             + +    L   LF    I+    ++     T + +L      +   + +L     S  
Sbjct: 580 F-NLQSPKQLEYILFEKLKINSTKKTKTGAYSTDEEVLRELAQREKIAEYMLTYRKYSKL 638

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               L+     V     R+  +      + TGR S      QN+P               
Sbjct: 639 KNTYLDVFPTLVHKKTNRIHASFNQTV-TATGRLSSSEPNLQNIP--------------- 682

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                      G     +R+  IA  G  L+ AD + IE R+LA  + +   ++AF N +
Sbjct: 683 ---------ARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNND 733

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T  K ++   + V+   R                                     
Sbjct: 734 DIHRKTAMKIYSVSKEHVTPSMRNTA---------------------------------- 759

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                     +  +  +         + +  +     +   K + + +  V    + + E
Sbjct: 760 ----------KIINFSIIYGKTAFGLSKELNISRKEADDFIKGYFSTYSQVKPFCEKVIE 809

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                      +                           R    S      + +    ++
Sbjct: 810 DVKAKGYVRTML--------------------------GRIRDLSKTINSSNAV--VRNE 841

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640
             R           ++Q  + D++   M    K          IV+ VHDE+V E  +  
Sbjct: 842 AERMA------LNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKE 895

Query: 641 YFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                T+   +M  +      +P+  + ++   +
Sbjct: 896 SDKAMTIMKEIMEHSVK--TNVPITVDIHKGLSW 927


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 104/691 (15%), Positives = 202/691 (29%), Gaps = 151/691 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--- 57
           S +  D ET              A +A I   ++   +             A+PS +   
Sbjct: 317 SIIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQ 366

Query: 58  --LQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112
              + L    +   + HN  ++  + +    +  P K++  T +LA         ++ + 
Sbjct: 367 TAKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDL 425

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L L ++     +    K       +                 A+     Y         
Sbjct: 426 ALRLFDYKTLHFESVVKKG------ENFASVELEKACNYAAEDAYITLRFYLYFLKNLEP 479

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L   L    + E +   + + +   G +++   +  L +   +E K L E+I  L D  
Sbjct: 480 NL---LKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDDK 536

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      +   LF    +     ++    T + +L +          IL     +   
Sbjct: 537 F-NLNSPKQVGDVLFEKLNLPSAKKTKTGYSTDEKVLENLVDKHPVVSKILAYRELAKLY 595

Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 L +    D   R+  +    G + TGR S      QN+P   +  +        
Sbjct: 596 STYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY------ 648

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +SC IA +G   +  D + IE R+LA  + ++  ++AF N E
Sbjct: 649 ------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDE 690

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T    F     + + E R++ K +   L Y  G                      
Sbjct: 691 DIHARTAIMIFG----ENNYETRSVAKSINFGLIYGMG---------------------- 724

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                 Y   +   K+  +  +   + + A    +   ++ +  
Sbjct: 725 ----------------------YKTLSQNLKIEASLAKEYIEKYFANFTSIKSYFERVKN 762

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            I   S R+           Y + A ++
Sbjct: 763 EAKINGY--------------------------ISTLSGRKR----------YFDFANAK 786

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643
            M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE++ E  D     
Sbjct: 787 PMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKDELCEK 846

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  +M         + LK     AK +
Sbjct: 847 FEKRARDIMENIVK--LKVNLKTSSSIAKNW 875


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 197/693 (28%), Gaps = 155/693 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------A 52
           S +  D ET               ++A I   ++   +        T             
Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLE 366

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110
                ++ + +  V  + HN  ++  + +   G+++  +++  T +LA         ++ 
Sbjct: 367 SAKKAIELIFNHFV--IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMD 423

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +  L L N+     +    K       +           +     A+     Y       
Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 477

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L +        E D   +   + + G ++D + +  L +    E K L E+I     
Sbjct: 478 EIPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIY-TLC 533

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      +   LF    +      +    T + +L            IL+    + 
Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYRELAK 593

Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   L +      + R+  +    G + TGR S      QN+P   +  +      
Sbjct: 594 LYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 648

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               +SC +A +G      D + IE R+LA  + ++  + AF N
Sbjct: 649 --------------------KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTN 688

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T    F     + + E R++ K +   L Y  G                    
Sbjct: 689 DEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG-------------------- 724

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                   Y   +   K+     +   + +      + + ++ +
Sbjct: 725 ------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETV 760

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                              I   S R+           Y +   
Sbjct: 761 KNEAKQNG--------------------------FITTLSGRKR----------YFDFEN 784

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641
           ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE++ E  D   
Sbjct: 785 AKPMQIAMYERESINSILQGSAADIIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLC 844

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + V     +M         + LK     AK +
Sbjct: 845 ENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 96/704 (13%), Positives = 192/704 (27%), Gaps = 174/704 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD 56
           S +  D ET +   L           A I   +++ D                   +  +
Sbjct: 323 SIVSFDTETTNLDVLC----------AKIVGFSFSLDGINAYYAPIAHSYLGVPEQISKE 372

Query: 57  L----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTN--GLPS 107
           L    +  L +  V  + HN  ++  +       +   K +     + +LA      +P 
Sbjct: 373 LALEFINSLFNAKV-VIGHNLKYDLEIL--HTNFNFTPKSYHNIKDSMLLAWLYQSDMPC 429

Query: 108 SLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +L +        +    K    K                           +    Y   D
Sbjct: 430 NLDDLMARYFKHTMIAFKDIIKKG------------------ENFSQLPIENAFTYACED 471

Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             A  +LF ++  L            E         +   G +I++     L+  + ++ 
Sbjct: 472 AAACYQLFFKINSLLPKSLQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKL 531

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLA 274
           + L ++I  L +    +      L + LF    +     ++    T  S+L+    +   
Sbjct: 532 QALSQEIYTLANKRF-NLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPI 590

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              +L            +  L E  S D   ++  +    G + TGR S      QN+P 
Sbjct: 591 IPKVLEYRELFKLYSTYIEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIP- 648

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   IA  G  L+  D + IE R+LA  
Sbjct: 649 -----------------------VKTQQGRRIREGFIAQEGHLLLSLDYSQIELRLLAHF 685

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF    DI++ T  K F    +++++E+R++ K +   L Y  G        
Sbjct: 686 SQDSAMIEAFHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLIYGMG-------- 734

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                 + +   ++     +   + +  
Sbjct: 735 ------------------------------------ARKLSETLQINHQEAKSYIQNYFQ 758

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               V    K+  E           +   R  +   +   +    +              
Sbjct: 759 SFPTVKNFLKEQEEFILKNGYSLTLLGRMRKFSFENIQEFQKVAFLREG----------- 807

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--TKNGYDIVLTVHD 630
                                       I Q  + DI+   M      K    ++L +HD
Sbjct: 808 -------------------------INAIFQGSAADIIKLAMIQITQEKLESKLLLQMHD 842

Query: 631 EIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ E P          +  +M    +    +PL+        +
Sbjct: 843 ELIFEAPKNIAETEAKKIAQIMESITT--LRVPLRCGVSLGANW 884


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 178/727 (24%), Gaps = 201/727 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---------------- 47
           +  D ET    P              +   +  + +                        
Sbjct: 393 VAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTC 442

Query: 48  --------------------------TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
                                         A+   L +   DET+  V HN  F+  +  
Sbjct: 443 ARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH 502

Query: 82  KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
           +    +  +     T V A           +               +    K        
Sbjct: 503 RAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQ------ 556

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDL 187
                             ++    Y   D + T  L+  L    +           E  L
Sbjct: 557 ------------TFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPL 604

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   + + G  +  D+V +L    +   ++ + DI  L      +      L+  LF 
Sbjct: 605 LPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEF-NIGSPKQLQTVLFQ 663

Query: 248 ITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
              +           T  S+L          + IL     S        +L++     GR
Sbjct: 664 ELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGR 723

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +    G + TGR S      QN+P                                +
Sbjct: 724 VHTSFVQIG-TATGRLSSRNPNLQNIP------------------------IKSTEGRKI 758

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    A+ G +L+ AD   IE  VLA ++ +   + AF    DI+  T A  FN  ID V
Sbjct: 759 RQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDV 818

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R I K +                    G+   + S                     
Sbjct: 819 QPAMRRIAKTINF--------------GIVYGMSAFRLSD-------------------- 844

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                     + K+     +     +   + GV      + E                  
Sbjct: 845 ----------ELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSL------- 887

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                              + RR     +    +      ++  R            +Q+
Sbjct: 888 -------------------AGRRRYIRTIDSRNTLER---ARAERMA------LNTQIQS 919

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
            + DI+   M    +          ++L VHDE++ E P      V  +  + M      
Sbjct: 920 SAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE- 978

Query: 658 AKGLPLK 664
              +PL+
Sbjct: 979 -LSIPLR 984


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
            Chicago]
          Length = 1015

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 178/727 (24%), Gaps = 201/727 (27%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---------------- 47
            +  D ET    P              +   +  + +                        
Sbjct: 411  VAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTC 460

Query: 48   --------------------------TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
                                          A+   L +   DET+  V HN  F+  +  
Sbjct: 461  ARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH 520

Query: 82   KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
            +    +  +     T V A           +               +    K        
Sbjct: 521  RAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQ------ 574

Query: 138  GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDL 187
                              ++    Y   D + T  L+  L    +           E  L
Sbjct: 575  ------------TFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPL 622

Query: 188  WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
              +   + + G  +  D+V +L    +   ++ + DI  L      +      L+  LF 
Sbjct: 623  LPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEF-NIGSPKQLQTVLFQ 681

Query: 248  ITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
               +           T  S+L          + IL     S        +L++     GR
Sbjct: 682  ELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGR 741

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            +  +    G + TGR S      QN+P                                +
Sbjct: 742  VHTSFVQIG-TATGRLSSRNPNLQNIP------------------------IKSTEGRKI 776

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R    A+ G +L+ AD   IE  VLA ++ +   + AF    DI+  T A  FN  ID V
Sbjct: 777  RQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDV 836

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                R I K +                    G+   + S                     
Sbjct: 837  QPAMRRIAKTINF--------------GIVYGMSAFRLSD-------------------- 862

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                      + K+     +     +   + GV      + E                  
Sbjct: 863  ----------ELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSL------- 905

Query: 545  NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                               + RR     +    +      ++  R            +Q+
Sbjct: 906  -------------------AGRRRYIRTIDSRNTLER---ARAERMA------LNTQIQS 937

Query: 605  ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
             + DI+   M    +          ++L VHDE++ E P      V  +  + M      
Sbjct: 938  SAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE- 996

Query: 658  AKGLPLK 664
               +PL+
Sbjct: 997  -LSIPLR 1002


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 97/688 (14%), Positives = 189/688 (27%), Gaps = 166/688 (24%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLF 75
             A I    +  D +                      + + L   L D ++  +  N  +
Sbjct: 346 MNASIVGWVFLIDKDS-FYVPVNHDYIDAPKQLNFNDVLNQLKPILEDVSISKIGQNLKY 404

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKAL 131
           +  +      ID+         V +          ++ +     LN+         GK  
Sbjct: 405 DAHILSNYK-IDLQGIS-DDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGK 462

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-------- 183
                               +    ++   Y   +V  T  L   L              
Sbjct: 463 KQ---------------VTFNQVNVEIALLYVCENVIITSLLNHMLDEEIAQYPRLVKLY 507

Query: 184 ---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E  L  +   +   G  +D++++   Q  I Q+ + +   + +L D +  +      
Sbjct: 508 QNLELPLIKVLLCMERNGVELDVNILSTQQLDITQQMEDIKNQVFELADNVF-NLESPKQ 566

Query: 241 LRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           ++  LF   G+              T +  L   +      DLIL+    +      L  
Sbjct: 567 IQRILFESKGLGLIPLRKTPKGVPSTNEEALKLLDHP--VVDLILSYRTLAKLNSTYLEV 624

Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L   +  +  RL  +      + TGR S      QN+P                      
Sbjct: 625 LPRKIDLNTHRLHTSYNQ-VVTATGRLSSSNPNLQNIP---------------------- 661

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    C+R   I   G  ++ AD + IE R++  ++ +   ++AF N +D++  T 
Sbjct: 662 --IFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETA 719

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +  FN PID+V+ E R   K +                    G+                
Sbjct: 720 STMFNIPIDEVTSEYRRRAKAINF--------------GLIYGMS--------------- 750

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A +  +  T  +     +   +  VL    ++ E       
Sbjct: 751 ---------------AYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAKVQGY 795

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
               +                           RRL    +      L     +       
Sbjct: 796 VETIM--------------------------GRRLYLPQINAKNKMLQQHALRT------ 823

Query: 594 GGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GT 646
                   +Q  S DI+ + M +             +++ VHDE+V E   +        
Sbjct: 824 ---AINAPMQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRK 880

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           + +LM+    +   +PLK +      ++
Sbjct: 881 IQALMSNT--YLLDIPLKVDVGIGNSWK 906


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/697 (14%), Positives = 189/697 (27%), Gaps = 152/697 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSDL--- 57
           S+   D ET S   L          +A I   ++A              +    + +   
Sbjct: 369 SEFCFDSETTSLNTL----------EAEIVGLSFAVKSFSAYYVPFPANREEAQAKINAF 418

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNAC-L 114
                D+T   +  N  ++  + K   GI+I   +   T V        +  ++      
Sbjct: 419 RSLFEDDTKTLIGQNIKYDFQVLKNY-GIEIK-NKLFDTMVAHFLIMPEMRHNMDILAQT 476

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            LN+S    +   GK    +                      +   EY   D + T +L 
Sbjct: 477 YLNYSPVSIETLIGKKGKEQTS--------------MRDVEIEKIKEYAAEDADVTFQLK 522

Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
               P            + E  L  +   I   G  +D+  + +    +  +   ++++I
Sbjct: 523 TAFAPKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEI 582

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279
                    +      +   LF    I D    ++     T + +LS           IL
Sbjct: 583 QDFAGTKF-NVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKIL 641

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           +           ++TL E V+    R+  +     A  TGR S      QN+P       
Sbjct: 642 DYRELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVA-VTGRLSSDNPNLQNIP------- 693

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   I  +    L+ AD + IE R++A I+G+  
Sbjct: 694 -----------------IRTERGRQIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKN 736

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
             +AF  G+DI+  T AK F      V+KE R   K +   + Y  G            L
Sbjct: 737 MCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQG-----AFGLSENL 791

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           ++ +        + F+++   +S+     +   E      L+G    L         + +
Sbjct: 792 NISRTEAKELIDNYFKEYGAIKSYMDRTINFARENGYVKTLLGRKRWL---------RDI 842

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                 +               +                          ++   ++  + 
Sbjct: 843 TSANATVRSYAERNAINAPIQGSAADMI---------------------KVAMINIYNEL 881

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N  T                             +                 +V +  
Sbjct: 882 EKQNFKTK---------------------------MLLQVHDE-----------LVFDVY 903

Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 V  +   LM +       +P++        +
Sbjct: 904 KPELEKVKPIIEKLMREALP--LDVPVEVGLGTGDNW 938


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/708 (17%), Positives = 208/708 (29%), Gaps = 155/708 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----S 55
           +L  D+ET S      V        A +   A                    +P     +
Sbjct: 354 RLIFDVETNSLNLFSPVP-------AKVVGIALTHTAGCGWYIPLGHRSGQQLPIAEVVA 406

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-- 113
            L     D     VAHN  F+       +G+D+P   +  T++ A   G   SLK+    
Sbjct: 407 ALQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLSF-DTAIAAALLGKRQSLKDLAFA 464

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              +  +   +M   + LI    K                 A +    Y   DV+ T  L
Sbjct: 465 ELRDADDRPIEMTRIETLIGTGKKQI----------TMDQVAIEQVTPYASADVDMTARL 514

Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
               +P               E  L  +   +   G  +D   +++  +++ Q  +++++
Sbjct: 515 LALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVLGQSLREIEQ 574

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS------------EGTLKSILSHSNI 270
            I       + +    + L   LF+   +   ++                    L     
Sbjct: 575 HIADFVGEPL-NINSRFDLNDLLFIRLKLPTANLKRLAGTTRSGGAVYSVNAETLEDLQT 633

Query: 271 TQL--AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
                   +IL     S      ++ L E ++   GR+    +  GA  TGR S      
Sbjct: 634 HDQSGIVAMILRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQIGAE-TGRLSSDSPNL 692

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R   +A  G  L+ AD + IE R
Sbjct: 693 QNIP------------------------VRSEEGREIRRAFVARPGHVLMTADYSQIELR 728

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA I  +   ++ F  G+DI+  T A+ F+ P+D+VSK QR I K+    + Y      
Sbjct: 729 VLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYG----- 783

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             +        L +          F  +   +S+     ++       + L G       
Sbjct: 784 ISSFGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGRRRYF-- 841

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                                   +Q+GG    RR A          +     ++    +
Sbjct: 842 ----------------------RELQDGGVTGPRRSAFEREATNAGIQGTAADLI----K 875

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           L    ++                                       M           L 
Sbjct: 876 LAMIRLEQALIAGGYQAK----------------------------ML----------LQ 897

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKN-PSWAKGLPLKAEGYEAKRY 673
           VHDE+V E P+    +V  L    MT+  P  A  +PL+        +
Sbjct: 898 VHDELVLEVPEDERDAVAQLVCDTMTQVYPDLA--VPLEVNVETGLNW 943


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 185/664 (27%), Gaps = 136/664 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
             A I   A   +DE                 + +L DE +     +    R+      G
Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387

Query: 86  IDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLT-KMEEGKALIARFCKGSI 140
            D+    +    +LA     P++     K   ++ ++ + L  +   GK           
Sbjct: 388 FDLRGVAFD--LLLATYIINPTNVSNEFKKVAMSYDYDDVLYDEEVYGKGAKR------- 438

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            +   +   A H           K       +   +L    + E  L  +   +   G  
Sbjct: 439 -AIAEESQIARHSIDIATAVLKLKETALEQLKEQDQLTLFEEMEMPLADVLAEMEFNGMA 497

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +DL  + ++ + +      L+ +I +   G+  +      L   LF    + ++  ++  
Sbjct: 498 LDLKTLDEMGQDLKGRITALENEIYEHA-GMSFNINSPKQLGEVLFDKLSLPVIKKTKTG 556

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L   +        I+     +      +  L +A  SDG++         ++T
Sbjct: 557 YSTNADVLEKLSDAHPIIKSIMEYRTLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQT 615

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
           GR S      QN+P                                +R   +    G  +
Sbjct: 616 GRLSSIEPNLQNIP------------------------IRLEEGRLIRKAFVPSEEGWVI 651

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R+LA I+  +  I+AF  GEDI+  T    F    ++++ + R   K + 
Sbjct: 652 LGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN 711

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L++ Q           E +     +               
Sbjct: 712 FGIIYGMS-----AFGLSENLNITQKEAKKYIDHYLETYSGINQYMEDTVKDAKFHGYAT 766

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            L            R     + Q    L +                              
Sbjct: 767 TLFNR---------RRYIPELSQKNYALRQ------------------------------ 787

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                             G+ + +N                     Q  + DI+ + M +
Sbjct: 788 -----------------FGERTAMNAPI------------------QGTAADIIKKAMID 812

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P      +  L    M         +PLKA+   
Sbjct: 813 VANAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSY 870

Query: 670 AKRY 673
              +
Sbjct: 871 GPTW 874


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 146/461 (31%), Gaps = 68/461 (14%)

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEE 127
           N  ++R + +   GI++    +  T + +           + +     L       +   
Sbjct: 1   NLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIA 58

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---- 183
           GK                      +  A +  G Y   D + T +L  ++ P        
Sbjct: 59  GKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGP 103

Query: 184 -------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                  E  L  +   +   G +ID  ++ K  E I     +L++    +  G   +  
Sbjct: 104 LNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLS 162

Query: 237 QTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            T  L+  LF   GI  +  +      T + +L    +      +IL     +       
Sbjct: 163 STKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYT 222

Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           + L   ++   GR+  +      + TGR S      QN+P                    
Sbjct: 223 DKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-------------------- 261

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  
Sbjct: 262 ----VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRA 317

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T A+ F  P+D V+ EQR   K +   L Y               L++ +          
Sbjct: 318 TAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGLSRQLNIPRKEAQKYMDLY 372

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           FE +     +    + Q  E    + L G    L       
Sbjct: 373 FERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSN 413


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/693 (14%), Positives = 202/693 (29%), Gaps = 155/693 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM--- 53
           S +  D ET              A++A I   ++  ++        T         +   
Sbjct: 317 SIIAFDTETTGLD----------AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366

Query: 54  -PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110
                ++ + +  V  + HN  ++  + +    + +  + +  T +LA         ++ 
Sbjct: 367 SAKKAIELIFNHFV--IGHNLKYDFKIIQNNFNLTL-PQEYADTMILAWLKNPSLRVNMD 423

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +  L L N+     +    K       +           +     A+     Y       
Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFTSVELEKACKYAAEDAYITLRFYLYFLKNL 477

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L +        E D   +   I + G ++D + +  L +    E K L E+I  +  
Sbjct: 478 ETPLLELAKTC---EFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIY-ILC 533

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      +   LF    +      +    T + +L+           IL+    + 
Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAK 593

Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   L +      + R+  +    G + TGR S      QN+P             
Sbjct: 594 LYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------- 641

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                        G  +   +SC +A  G   +  D + IE R+LA  + ++  + AFAN
Sbjct: 642 -------------GQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFAN 688

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+V T    F     + + E R++ K +   L Y  G                    
Sbjct: 689 DEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMG-------------------- 724

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                   Y   +   K+  +  +   + +      + + ++ +
Sbjct: 725 ------------------------YKTLSQNLKIEASLAKSYIEKYFENFTSIKKYFEKI 760

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                              I   S R+           Y +   
Sbjct: 761 KNEAKQNG--------------------------FITTLSGRKR----------YFDFEN 784

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641
           ++ M+   Y  +   +I+Q  + D++   M    K       ++L +HDE++ E  D   
Sbjct: 785 AKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDKLC 844

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + V     +M         + LK     AK +
Sbjct: 845 ENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/727 (13%), Positives = 177/727 (24%), Gaps = 201/727 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---------------- 47
           +  D ET    P              +   +  + +                        
Sbjct: 393 VAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTC 442

Query: 48  --------------------------TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
                                         A+   L +   DET+  V HN  F+  +  
Sbjct: 443 ARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH 502

Query: 82  KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
           +    +  +     T V A           +               +    K        
Sbjct: 503 RAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQ------ 556

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDL 187
                             ++    Y   D + T  L+  L    +           E  L
Sbjct: 557 ------------TFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPL 604

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   + + G  +  D+V +L    +   ++ + DI  L      +      L+  LF 
Sbjct: 605 LPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEF-NIGSPKQLQTVLFQ 663

Query: 248 ITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
              +           T  S+L          + IL     S        +L++     GR
Sbjct: 664 ELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGR 723

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +    G + TGR S      QN+P                                +
Sbjct: 724 VHTSFVQIG-TATGRLSSRNPNLQNIP------------------------IKSTEGRKI 758

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    A+ G +L+ AD   IE   LA ++ +   + AF    DI+  T A  FN  ID V
Sbjct: 759 RQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDV 818

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R I K +                    G+   + S                     
Sbjct: 819 QPAMRRIAKTINF--------------GIVYGMSAFRLSD-------------------- 844

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                     + K+     +     +   + GV      + E                  
Sbjct: 845 ----------ELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSL------- 887

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                              + RR     +    +      ++  R            +Q+
Sbjct: 888 -------------------AGRRRYIRTIDSRNTLER---ARAERMA------LNTQIQS 919

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
            + DI+   M    +          ++L VHDE++ E P      V  +  + M      
Sbjct: 920 SAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE- 978

Query: 658 AKGLPLK 664
              +PL+
Sbjct: 979 -LSIPLR 984


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/691 (15%), Positives = 201/691 (29%), Gaps = 151/691 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--- 57
           S +  D ET              A +A I   ++   +             A+PS +   
Sbjct: 317 SIIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQ 366

Query: 58  --LQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112
              + L    +   + HN  ++  + +    +  P K++  T +LA         ++ + 
Sbjct: 367 AAKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDL 425

Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L L ++     +    K       +                 A+     Y         
Sbjct: 426 ALRLFDYKTLHFESVVKKG------ENFASVELEKACNYAAEDAYITLRFYLYFLKNLEP 479

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L   L    + E +   + + +   G +++   +  L +   +E K L E+I  L D  
Sbjct: 480 NL---LKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDDK 536

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      +   LF    +     ++    T + +L            IL     +   
Sbjct: 537 F-NLNSPKQVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYRELAKLY 595

Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 L +    D   R+  +    G + TGR S      QN+P   +  +        
Sbjct: 596 STYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY------ 648

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +SC IA +G   +  D + IE R+LA  + ++  ++AF N E
Sbjct: 649 ------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDE 690

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T    F     + + E R++ K +   L Y  G                      
Sbjct: 691 DIHARTAIMIFG----ENNYETRSVAKSINFGLIYGMG---------------------- 724

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                 Y   +   K+  +  +   + + A    +   ++ +  
Sbjct: 725 ----------------------YKTLSQNLKIEASLAKTYIEKYFANFTSIKSFFEKVKN 762

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            I   S R+           Y + A ++
Sbjct: 763 DAKING--------------------------FISTLSGRKR----------YFDFANAK 786

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643
            M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE++ E  D     
Sbjct: 787 PMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKDELCEK 846

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  +M         + LK     AK +
Sbjct: 847 FEKRARDIMENIVK--LKVNLKTSSSIAKNW 875


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 197/676 (29%), Gaps = 131/676 (19%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
           SP  L    +     +A I   +   ++                   ++  DE+      
Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIPEETAVQ-SDCFKEWAEDESKKKWVF 374

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEG 128
           ++     +  +  GI++    +    + A       S  +             ++  E  
Sbjct: 375 DAK-RAAVALRWRGIELKGAEF-DVLLAAYIINPGHSYDDVASVAKEHQL-HIVSADEAV 431

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
                   KG+  + P +   A+H+          +  +    E  ++L      E  L 
Sbjct: 432 YG------KGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLA 485

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G ++D+D + K+ E ++ +  + ++ I +   G   +      L + LF  
Sbjct: 486 HILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESA-GETFNINSPKQLGVILFDK 544

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
            G+ +V  ++    T   +L       +  + IL+           +  L + +  D   
Sbjct: 545 LGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQIGKLQSTYVEGLLKVIKKDSHK 604

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      ++TGR S      QN+P                                +R
Sbjct: 605 VHTRFNQALTQTGRLSSTDPNLQNIP------------------------IRLEEGRKIR 640

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              + S  G  +  AD + IE RVLA I+ +   I+AF N  D++  T    F+   ++V
Sbjct: 641 QAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEV 700

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +   R   K +   +                G+     SQN                   
Sbjct: 701 TPAMRRQAKAVNFGIV--------------YGISDYGLSQN------------------- 727

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                        +         + +    QGV +  ++  +           +S RR  
Sbjct: 728 -----------LGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYI 776

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                          + + +NT                   +Q 
Sbjct: 777 PELTSRNFNL-----------------RSFAERTAMNT------------------PIQG 801

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
            + DI+ + M +             ++L VHDE++ E P+     +  L   +M      
Sbjct: 802 SAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE- 860

Query: 658 AKGLPLKAEGYEAKRY 673
              +PLK +      +
Sbjct: 861 -LDVPLKVDCASGPSW 875


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 185/664 (27%), Gaps = 136/664 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
             A I   A   +DE                 + +L DE +     +    R+      G
Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387

Query: 86  IDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLT-KMEEGKALIARFCKGSI 140
            D+    +    +LA     P++     K   ++ ++ + L  +   GK           
Sbjct: 388 FDLRGVAFD--LLLATYIINPTNVSNEFKKVAMSYDYDDVLYDEEVYGKGAKR------- 438

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            +   +   A H           K       +   +L    + E  L  +   +   G  
Sbjct: 439 -AIAEESQIARHSIDIATAVLKLKETALEQLKEQDQLTLYEEMEMPLADVLAEMEFNGMA 497

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +DL  + ++ + +      L+ +I +   G+  +      L   LF    + ++  ++  
Sbjct: 498 LDLKTLDEMGQDLKGRITALENEIYEHA-GMSFNINSPKQLGEVLFDKLSLPVIKKTKTG 556

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L   +        I+     +      +  L +A  SDG++         ++T
Sbjct: 557 YSTNADVLEKLSDAHPIIKSIMEYRTLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQT 615

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
           GR S      QN+P                                +R   +    G  +
Sbjct: 616 GRLSSIEPNLQNIP------------------------IRLEEGRLIRKAFVPSEEGWVI 651

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R+LA I+  +  I+AF  GEDI+  T    F    ++++ + R   K + 
Sbjct: 652 LGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN 711

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L++ Q           + +     +               
Sbjct: 712 FGIIYGMS-----AFGLSENLNITQKEAKKYIDHYLKTYSGINQYMEDTVKDAKFHGYAT 766

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            L            R     + Q    L +                              
Sbjct: 767 TLFNR---------RRYIPELSQKNYALRQ------------------------------ 787

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                             G+ + +N                     Q  + DI+ + M +
Sbjct: 788 -----------------FGERTAMNAPI------------------QGTAADIIKKAMID 812

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P      +  L    M         +PLKA+   
Sbjct: 813 VANAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSY 870

Query: 670 AKRY 673
              +
Sbjct: 871 GPTW 874


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/657 (15%), Positives = 194/657 (29%), Gaps = 131/657 (19%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPS 90
           L  ++  +E    +   + +       ++  ++       +S   R +   +  GI++  
Sbjct: 336 LLGFSIVNETGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSK--RAVVALRWQGIELKG 393

Query: 91  KRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +  T + A      +S  +             ++  E          KG+  + P + 
Sbjct: 394 AEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------KGAKRAVPSED 445

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             + H+    L  +  +  +    E   +L    + E  L L+   +   G ++D+D + 
Sbjct: 446 VLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLK 505

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++ E +  + K+ +E I ++      +      L + LF   G+ +V  ++    T   +
Sbjct: 506 RMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADV 564

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          D IL            +  L +    D     T      ++TGR S   
Sbjct: 565 LEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRLSSTD 624

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383
              QN+P                                +R   + S     +  AD + 
Sbjct: 625 PNLQNIP------------------------IRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA I+ +   I+AF N  DI+  T    F+   D+V+   R   K +        
Sbjct: 661 IELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNF------ 714

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+     SQN                                +     
Sbjct: 715 --------GIVYGISDYGLSQN------------------------------LGITRKEA 736

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                 +    QGV    +D  +          +    R   +P L  R           
Sbjct: 737 GAFIDQYLESFQGVKAYMEDSVQDAKQKGYV--TTLMHRRRYIPELTSRNFN-------- 786

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                       + + +NT                   +Q  + DI+ + M +       
Sbjct: 787 -------IRSFAERTAMNT------------------PIQGSAADIIKKAMIDMAAKLKE 821

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 822 KQLKARLLLQVHDELIFEAPQEEIEILEKLVPEVMEHA--LALDVPLKVDFASGPSW 876


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 197/676 (29%), Gaps = 131/676 (19%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
           SP  L    +     +A I   +   ++                   ++  DE+      
Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIPEETAVQ-SDCFKEWAEDESKKKWVF 374

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEG 128
           ++     +  +  GI++    +    + A       S  +             ++  E  
Sbjct: 375 DAK-RAAVALRWRGIELKGAEF-DVLLAAYIINPGHSYDDVASVAKEHQL-HIVSADEAV 431

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
                   KG+  + P +   A+H+          +  +    E  ++L      E  L 
Sbjct: 432 YG------KGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLA 485

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G ++D+D + K+ E ++ +  + ++ I +   G   +      L + LF  
Sbjct: 486 HILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESA-GETFNINSPKQLGVILFEK 544

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
            G+ +V  ++    T   +L       +  + IL+           +  L + +  D   
Sbjct: 545 LGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQIGKLQSTYVEGLLKVIKKDSHK 604

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      ++TGR S      QN+P                                +R
Sbjct: 605 VHTRFNQALTQTGRLSSTDPNLQNIP------------------------IRLEEGRKIR 640

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              + S  G  +  AD + IE RVLA I+ +   I+AF N  D++  T    F+   ++V
Sbjct: 641 QAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEV 700

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +   R   K +   +                G+     SQN                   
Sbjct: 701 TPAMRRQAKAVNFGIV--------------YGISDYGLSQN------------------- 727

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                        +         + +    QGV +  ++  +           +S RR  
Sbjct: 728 -----------LGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYI 776

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                          + + +NT                   +Q 
Sbjct: 777 PELTSRNFNL-----------------RSFAERTAMNT------------------PIQG 801

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
            + DI+ + M +             ++L VHDE++ E P+     +  L   +M      
Sbjct: 802 SAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE- 860

Query: 658 AKGLPLKAEGYEAKRY 673
              +PLK +      +
Sbjct: 861 -LDVPLKVDCASGPSW 875


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/640 (15%), Positives = 186/640 (29%), Gaps = 141/640 (22%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                       L     ++ +  V+HN      +FKK +GI+  S ++  T + A    
Sbjct: 367 IYEENNEDTLKCLKDIFENDKIEKVSHNIKVPYTVFKK-MGINFTSVKF-DTEIAAYLID 424

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                         +            I  + K  +     +     +     +F    K
Sbjct: 425 SSRG------EYGLNSI----------IQDYLKIMLQGEEDEIRVKENSLLKDVFETLNK 468

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  E   E       L + E+ L L+   +   G+++D   + +L E    E  KL +DI
Sbjct: 469 QIKELNME-----ELLYEVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDI 523

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
             L +    +      L   LF    + ++  ++    T   +L          + I   
Sbjct: 524 YGLAEEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYY 582

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +      +  L   +  DG++  +      + TGR S      QN+P          
Sbjct: 583 RQFTKLYSTYIEGLKAVIDKDGKIHSSFNQTV-TTTGRLSSTEPNLQNIP---------- 631

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +       ++ AD + IE RVLA IA ++  I 
Sbjct: 632 --------------IKYEMGREIRKVFVPEDENSIILSADYSQIELRVLAHIADDENLID 677

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF N  DI+  T ++ F  PID+V+K QR+  K +   + Y  G       +    L + 
Sbjct: 678 AFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIG-----DFSLAKDLKIS 732

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +        + FE +   + +   +  Q  +      ++           R     +   
Sbjct: 733 RKEAKNYIDTYFERYPGVKRYMDNVIKQAEDNLYVTTIMNR---------RRFIPEIKNS 783

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            K +                                                  G+   +
Sbjct: 784 KKMV-----------------------------------------------KAFGERLAM 796

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634
           NT                   +Q  + DI+   M N             ++L VHDE++ 
Sbjct: 797 NTP------------------IQGSAADIIKMSMVNVYNILKSKNLKSKVILQVHDELIL 838

Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                    V  L    M         +PL+ +      +
Sbjct: 839 NVYKDELEEVKELVKNQMEDVMK--LRVPLEVDINLGDNW 876


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 107/676 (15%), Positives = 188/676 (27%), Gaps = 147/676 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFE 76
           A +   A   D                         +   L  +L D+ +  V H+    
Sbjct: 338 AELIGVALGLDSGNAGYIPLEPGAAEKSASSLSEEQVFPVLFPFLADKKIALVGHDLKTV 397

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALI 132
            I+  +  G+ +     + T V A                   L+           K L 
Sbjct: 398 LIVLSQ-KGVKVQ-NPLLDTMVAAYILNPARRGYELSEIVQDYLHRQVEP----LRKKL- 450

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------- 183
                           ++      +   ++  R VEA  EL   LI   +          
Sbjct: 451 ---------VGGSSPKQSPASFPPERLRDFACRRVEAIGELASTLIEKMEETGLRELFDS 501

Query: 184 -ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   + ++G  +DL L+ ++ + +      L E  +    G   +      L+
Sbjct: 502 VEMPLVAVLAAMEEKGVLLDLHLLKEMSQELG-HLLSLSEAKIYALAGERFNIASPKQLQ 560

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    +     ++    T   +LS+  +       IL   + +      ++ L   +
Sbjct: 561 TILFEKLNLPKGKKTKGGYSTDVEVLSNLALNHELPAEILAYRSMAKLKSTYIDALPSLI 620

Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+  +     A  TGR S      QN+P                           
Sbjct: 621 NIRTGRIHTSYNQTVA-ATGRLSSSNPNLQNIP------------------------IRT 655

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           L    +R   IA  G  +V AD + IE RVLA ++ +   I AFA GEDI+  T A  F 
Sbjct: 656 LEGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFG 715

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              + ++ E R   KV+   + Y               L + Q          F+ +E  
Sbjct: 716 VFPEMINAEMRRQAKVINFGVLYGMS-----AFGLSRELGIPQKQAQAYIDGYFKKYESV 770

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           +++   +  Q  E      L+           R     +  +   + +    +       
Sbjct: 771 KTYLDGILQQARERGYVTTLLNR---------RRYLPEINSVNPAVRQLAERMAINAPIQ 821

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                                I +   R       KG                       
Sbjct: 822 GTAADL---------------IKMAMLRIADLIREKG----------------------- 843

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657
                      +   M           + VHDE+V E P     ++  L    M      
Sbjct: 844 -----------MKSAMT----------MQVHDELVFEVPQEEKIALMNLVRQEMEGVVE- 881

Query: 658 AKGLPLKAEGYEAKRY 673
              +PLK +    + +
Sbjct: 882 -LKVPLKVDIASGRNW 896


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 108/719 (15%), Positives = 199/719 (27%), Gaps = 180/719 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-----MPSD 56
             + +D ET S            A +A +   + A                      P  
Sbjct: 357 RLVAVDTETSSLD----------AMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQ 406

Query: 57  LL---------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           +            L D++V+ V  N  ++  +  +   + I       T V++       
Sbjct: 407 VAMEDALAALKLLLEDDSVLKVFQNGKYDLNVLAR---VGIDVSPIEDTMVMSFDLDAGR 463

Query: 108 S--------LKNACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                    +       L       K     GK  I                        
Sbjct: 464 GEGMGGGHGMDELSERHLLHKPLAFKDVCGTGKKAIPFGEVP-----------------L 506

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLV 206
               EY   D + T  L++ L P    E          R L  +   +   G ++D   +
Sbjct: 507 DRATEYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARL 566

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--------VDMSE 258
            KL E  A     L+++I ++  G   +      L   LF   G               +
Sbjct: 567 AKLSEEFATTTASLEKEIHEIA-GQQFAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQ 625

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
             L+++        +A  ++  R   S       + L   ++   GR+  +    GA +T
Sbjct: 626 SVLENLAKDEAAKPIADKVLEWR-HLSKLKSTYTDALQAQINPETGRVHTSYSLVGA-QT 683

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   +  +G  L+
Sbjct: 684 GRLSSTDPNLQNIP------------------------IRTEIGRTIREAFVPEDGNVLL 719

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+ A +A  D   +AFANGEDI+  T  + F     +V+++ RA  K +  
Sbjct: 720 AADYSQIELRLAAHMADVDTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINF 775

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           A+ Y               L+++         + F+ +   + + +   +   E    + 
Sbjct: 776 AILYG-----ISRWGLAGRLEVEPDEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSET 830

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           L G                +    +   +G                           KR 
Sbjct: 831 LFGRK---------TWFPRITSKNQAERQGSERAAINAPIQGT---------SADIIKRA 872

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           +  +LP+ R     +V+                                       +   
Sbjct: 873 MARMLPALRDEGLGNVRM--------------------------------------LLQV 894

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673
                        E+V E PD        +   +M +   P+ +  +PL  +    + +
Sbjct: 895 HD-----------ELVFELPDGDVEKASPIIERVMAEAALPAVSLDVPLAVDIGTGQSW 942


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 98/674 (14%), Positives = 185/674 (27%), Gaps = 163/674 (24%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-------FE 76
           +AE A I     ++  E +         +M  +LL+ L         H +        F+
Sbjct: 344 FAENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALV--------HVAKHAGRFVVFD 394

Query: 77  RIL-FKKTLGID-IPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKA 130
                    G++    ++   + V A            ++     L          E   
Sbjct: 395 LKSSLPYLKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTELE--K 452

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           ++      +  S      +    + W+LF                     ++ E  L   
Sbjct: 453 MVCYEAYAAFASSEVLEEKLKKEEMWKLF---------------------TEIEMPLVFT 491

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G R++ + +    E +  +  +L+++I +L      +      L + LF    
Sbjct: 492 LFHMEQNGVRVEAEELKSYGEQLGGKIVQLEKEIYELAGEEF-NINSPKQLGVVLFEHLS 550

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLR 306
           +     ++    T   +L            IL     +       + L+  +  D  R+ 
Sbjct: 551 LPNGKKTKTGYSTAADVLDKLAPDYPIVAKILEYRQLAKLKSTYADGLAVFIHEDDHRIH 610

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
           G       + TGR S      QN+P                                +R 
Sbjct: 611 GKFNQTV-TATGRISSTEPNLQNIP------------------------ARVELGRLIRK 645

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +   G   V AD + IE RVLA  +G+   I+A+   +DI+  T ++ F+TP D+V+ 
Sbjct: 646 VFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTD 705

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            QR   K +   + Y        +      L + +          FE +   +       
Sbjct: 706 LQRRNAKAVNFGIVYG-----ISSFGLSQDLSITRKEAAEYIDRYFETYPGIKKFLDDAV 760

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
               E      L G    +           +        +                    
Sbjct: 761 AHAKEQGYVVTLFGRRRPV---------PELSSSNFMQRQ-------------------- 791

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                                       G+   +N+                    Q  +
Sbjct: 792 ---------------------------FGERVAMNSPI------------------QGTA 806

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK 659
            DI+   M    K          +VL VHDE++ ET       V  +    M        
Sbjct: 807 ADIMKIAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAAD--L 864

Query: 660 GLPLKAEGYEAKRY 673
            +PL+ + +  K +
Sbjct: 865 SVPLEIDMHSGKNW 878


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/690 (15%), Positives = 181/690 (26%), Gaps = 158/690 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             Q  ++  A A           + +                          L   L    
Sbjct: 433  MQTELSGIALALAPNHACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRG 492

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121
             + +  N  F  +L  +  GI + +       +++           L +     L  +  
Sbjct: 493  HLKIGLNVKFSAVLLAQH-GIVMQNH--DDIELISYALDAGRGSHDLASLAKRWLGHATV 549

Query: 122  LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  G                     A    A      Y     + T  L++ L P  
Sbjct: 550  SHGELTGSGRNRL---------------AFDQVAIDRATAYAAEYADMTLRLWQVLKPRL 594

Query: 182  DGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              ER           +      +  RG  ID  ++ +L    AQ   +L+ +I +L    
Sbjct: 595  VAERMNTVYETLERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEP 654

Query: 232  IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSG 286
            I +      +   +F   G+     ++     T   IL             IL+    S 
Sbjct: 655  I-NVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDELAEQGHDFPRKILDWRQVSK 713

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                  + L E V    R   T     A+ TGR S      QN+P               
Sbjct: 714  LKSTYTDALPEYVHPQTRRVHTTYALAATTTGRLSSNEPNLQNIP--------------- 758

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +R   IA+ G KLV AD + IE R+LA IA      +AF +G 
Sbjct: 759  ---------VRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGL 809

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            DI+  T ++ F  P+  +  E R   K +   + Y               L + +     
Sbjct: 810  DIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAAA 864

Query: 467  KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 FE +    ++    ++   E      L G  C          +  +         
Sbjct: 865  YIKKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCH---------YPDIKSPNPSHRA 915

Query: 527  GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                         +                          R   + +    +  N     
Sbjct: 916  FNERAAINARLQGSAADII---------------------RRAMARMDDALAARNL---- 950

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVG 645
                               +R      M           L VHDE++ E PD     ++ 
Sbjct: 951  ------------------SAR------ML----------LQVHDELIFEVPDDEVAATLP 976

Query: 646  TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             +  +M     P+    +PL+ +   A  +
Sbjct: 977  VVQHVMQDAPFPAVLLSVPLQVDARAADNW 1006


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/667 (15%), Positives = 190/667 (28%), Gaps = 139/667 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I  CA    D          +   P  L++ LRD + +    +     +   +  GID
Sbjct: 330 ADIRGCALGRFDGSAAFVQGEARDW-PQPLVECLRDGSKLKAVQDLKPLLLALHRQ-GID 387

Query: 88  IPSKRWICTSVLARTNGLPS--------SLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
           +P   +  T V                 ++      L   E     +  K   + F    
Sbjct: 388 MPG-PYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGER---EDTSKGPQSLFDVDE 443

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                     A   +   +  E  K            L    D E  L  +   I   G+
Sbjct: 444 ALVRRTGEAAAVTAKVAPMLRERLKE--------QGSLSLFQDVEMPLVPVLAEIERNGF 495

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDM 256
            +D+  +  L + +  E +++   I +L  G   +      L   LF   G+        
Sbjct: 496 LLDVAGLQALSKELEHELEQMVGSIYRLGGGEF-NIGSPKQLATVLFETLGLKPLRKTKT 554

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315
              T +  L+           ILN    +      ++ L + V+    RL  +L    A 
Sbjct: 555 GYSTDEDTLTQLASQHELPAQILNYRTLTKLKSTYVDALPQLVNPETKRLHTSLNQTVA- 613

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                          G     +R   IA  G +
Sbjct: 614 ATGRLSSTDPNLQNIP------------------------VKGDYGLRIREAFIAPPGHQ 649

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + +E R+LA ++ +   ++ F  GEDI++ T  + FN P  +V+++ R   K +
Sbjct: 650 LLCADYSQVEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSV 709

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               + + Q                                  
Sbjct: 710 VFGIVYGISP-----FGLASNIGVPQAD-------------------------------- 732

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
                   +   + +  K   V  L     +           +                 
Sbjct: 733 -------AKKYIETFFEKFAAVRALMDRNIDDGKTKGYTTTIL----------------- 768

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    +++G          ++            + +Q  + D++   M 
Sbjct: 769 ---------GRRRPIPELQGGDPSQRGVGERM---------AVNSPIQGSAADLIKVAMI 810

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN-PSWAKGLPLKAEG 667
              +          ++L VHDE++ E P+        L    M     +    +PLK + 
Sbjct: 811 KVHQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEMEATGAALGLSVPLKVDL 870

Query: 668 YEAKRYR 674
                +R
Sbjct: 871 GVGLNWR 877


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/678 (14%), Positives = 190/678 (28%), Gaps = 133/678 (19%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
            S   L   G         +     + ++      D+    +  S    +L D  V    
Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNNNGH-YFIDKDTALS-SSKFKAWLEDGRVKKTV 369

Query: 71  HNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS--EHLTKMEE 127
            N    R +   K  G +I         + +       +  +            +   E 
Sbjct: 370 FNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSDEA 426

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                    KG+  S       A HV        Y K  +E      ++       E  L
Sbjct: 427 VYG------KGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPL 480

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
            ++   +  +G +ID   + ++ E + ++ +K++  I +       +      L + LF 
Sbjct: 481 AIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF-NINSPKQLGVVLFE 539

Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DG 303
              + ++  ++    T   +L     T      IL            +  L + +   DG
Sbjct: 540 KMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQSTYIEGLKKVIHESDG 599

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           ++         ++TGR S      QN+P                                
Sbjct: 600 KVHTRFNQT-LTQTGRLSSVDPNLQNIP------------------------IRLEEGKK 634

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S  G  +  AD + IE RVLA IA ++  I AF +  DI+  T    F+   +
Sbjct: 635 IRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +                    G+     SQ+                 
Sbjct: 695 EVTANMRRQAKAVNF--------------GIVYGISDYGLSQS----------------- 723

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                          +   A     + +     GV +    +            +    R
Sbjct: 724 -------------LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYV--TTLLHR 768

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
              +P +  R                       + + +NT                   +
Sbjct: 769 RRYLPEITSRNFNL---------------RSFAERTAMNT------------------PI 795

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
           Q  + DI+ + M    K          ++L VHDE++ E P+     +  +   +M    
Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
                +PLK +    K +
Sbjct: 856 E--LEVPLKVDYSYGKTW 871


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/686 (12%), Positives = 200/686 (29%), Gaps = 156/686 (22%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-----EQSAMPSDLLQYL 61
           D E      +    +++      I       + E   + D        +  +  DL ++ 
Sbjct: 319 DTEIYMSYSIGNGELYSKI---YIDTIFMKVE-EKTYIVDLKKIIEQNREDVLKDLKEFF 374

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
            ++ +  + H+S     +  K  GI I +  +  T++            +LK+A   +  
Sbjct: 375 ENKKIAKIIHDSKNMYTVLMKN-GIKIENLAF-DTAIAEYLINPSKKEYNLKDAAEEMLL 432

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            +   +  + K           +         +                    EL+ ++ 
Sbjct: 433 LDLTGEDNDIKIKEVYVMDKIYNKLKDKIKEYD------------------MDELYYKV- 473

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E  L  +  ++   G++++ + + ++ +    E  K+ ++I  +      +    
Sbjct: 474 -----ELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEIYNMAGEEF-NISSP 527

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    + ++  ++    T   +L          + ++     +      +  L
Sbjct: 528 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYYRQLTKLYSTYVEGL 587

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              +  D ++  +      + TGR S      QN+P                        
Sbjct: 588 KPVIDVDEKIHSSFNQTV-TTTGRLSSTEPNLQNIP------------------------ 622

Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   +   ++ AD + IE RVLA IA ++  I AF +  DI+  T +
Sbjct: 623 IKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHSDIHTKTAS 682

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           + F  PI++V+   R+  K +   + Y          +    + + +        + FE 
Sbjct: 683 EVFRVPIEEVTSRMRSNAKAVNFGIVYG-----ISDFSLAQDIKVSKKEAKEYIDTYFER 737

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           +   + +   +     +    + ++           R     +    K +          
Sbjct: 738 YPNVKKYLEDIVVTAKKNMYVNTIMNR---------RRIIPEIASSNKIV---------- 778

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                                   G+   +NT            
Sbjct: 779 -------------------------------------KGFGERLAMNTP----------- 790

Query: 595 GKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  +Q  + D++   M N        K    ++L VHDE++          V  L 
Sbjct: 791 -------IQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELV 843

Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRY 673
            L M +       +PL+ +      +
Sbjct: 844 KLEMEEVME--LKVPLEVDIESGNTW 867


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/670 (15%), Positives = 196/670 (29%), Gaps = 140/670 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---SDLLQYLRDETVMCVAHNSLFERI 78
             Y E+  I   +   ++  +          +         +  DE++     +S   R 
Sbjct: 328 DNYHEEP-ILGFSI-VNETGLYYIP----KEIAIQSETFKSWAEDESMKKWVFDSK--RS 379

Query: 79  LFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIAR 134
           +   +  GI++    +    + A      +S  +          +  ++K E        
Sbjct: 380 VVALRWQGIELKGTEF-DALLAAYIINPGNSYDDVASVAKEYGLN-IVSKDEAVYG---- 433

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             KG+  + P +   A+H+          +  +    E   +L    D E  L L+   +
Sbjct: 434 --KGAKRAVPAEKELADHLARKASAVNSLRDKLLHALEENNQLELYEDLELPLALILGEM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G ++D++ + ++ E +  + K+ +E I  +      +      L + LF   G+  V
Sbjct: 492 ESMGVKVDVERLKRMGEELKAKLKEYEEKIHDIAGEPF-NINSPKQLGVILFEKLGLPPV 550

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             ++    T   +L            IL            +  L +    D     T   
Sbjct: 551 KKTKTGYSTSADVLEKLADKHDIVAHILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFN 610

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370
              ++TGR S      QN+P                                +R   +  
Sbjct: 611 QALTQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPS 646

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                +  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D+V++  R 
Sbjct: 647 EPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRR 706

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   +                G+     SQN                         
Sbjct: 707 QAKAVNFGIV--------------YGISDYGLSQN------------------------- 727

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +           +     GV    ++  +          +   +R   +P L 
Sbjct: 728 -----LGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYV--TTLMQRRRYIPELT 780

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
            R                       + + +NT                   +Q  + DI+
Sbjct: 781 SRNFNL---------------RSFAERTAMNT------------------PIQGSAADII 807

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
            + M +             ++L VHDE++ E P      +  L   +M      A  +PL
Sbjct: 808 KKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPL 865

Query: 664 KAEGYEAKRY 673
           KA+      +
Sbjct: 866 KADYASGPSW 875


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/694 (14%), Positives = 202/694 (29%), Gaps = 150/694 (21%)

Query: 8   IET--RSPQPLPKVGVWAYAE-------QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            ET       L       Y E        A I   + A  +  V      E +       
Sbjct: 302 FETAENILDDLFADETAFYVEMLEENYHTAEIAGFSAASGNG-VYFIP-AELALSSETFK 359

Query: 59  QYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---A 112
           ++  DE+   +     ++     +  +  GI +    +    + +       S+++    
Sbjct: 360 KWAEDESKKKIV----YDAKRTEVSLRHHGIHLKGVEF-DLLIASYIINPSESIEDFASV 414

Query: 113 CLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                ++   T     GK    +         P     A H+       E  +  +E   
Sbjct: 415 AKRHGYNGVQTDDAVYGKGAKRK--------IPAQEELAGHLARKAAALEALRDKLEDEL 466

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           +  ++     D E  L L+   +  +G ++DL+ +  + E I Q+   ++E I +L  G 
Sbjct: 467 KENRQYELFYDLEMPLSLILADMESQGVKVDLERLQAMGEQINQKLGDIEERIHELA-GE 525

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L + LF   G+  V  ++    T   +L            IL         
Sbjct: 526 AFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLEDKHEIIREILQYRQLGKLQ 585

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +  L +      G++         ++TGR S      QN+P                
Sbjct: 586 STYIEGLLKVTDKKTGKVHTRFNQA-LTQTGRLSSTDPNLQNIP---------------- 628

Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   + S  G  +  AD + IE RVLA IAG++  I+AF   +
Sbjct: 629 --------IRLEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKLIEAFREDQ 680

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T  + F+    +V+   R   K +                    G+     SQ+ 
Sbjct: 681 DVHTKTAMEVFHVSEGEVTSNMRRHAKAVNF--------------GIVYGISDYGLSQS- 725

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +           +   + GV +   D+ +
Sbjct: 726 -----------------------------LGITRKEAGQFIDRYLESYPGVREYMDDIIQ 756

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                     S    R   +P +  R                       + + +NT    
Sbjct: 757 EAKQKGYV--STLLHRRRYLPEITSRNFNL---------------RSFAERTAMNT---- 795

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
                          +Q  + D++ + M +             ++L+VHDE++ E P+  
Sbjct: 796 --------------PIQGSAADVIKKAMIDMADRLREEGLQSRLLLSVHDELIFEAPEEE 841

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              +  +   +M         +PLK +      +
Sbjct: 842 IEILKRIVPDVMENTVD--LDVPLKVDFSYGPTW 873


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/681 (14%), Positives = 186/681 (27%), Gaps = 151/681 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL-LQY 60
            +  D ET               + A I   +++++DE              P  + L++
Sbjct: 317 IVAFDTETTGVDS----------KSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDLKF 366

Query: 61  LRDE--TVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC 113
                  +     +  N  ++  + K  LG++ P   +  T +LA  +   SS  +    
Sbjct: 367 ATWAVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNSSVGMDALA 425

Query: 114 LAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             L ++     +    K           D P  +  +     AW     Y          
Sbjct: 426 KRLYDYDTIKFEDVVKKGQ------TFGDVPLENAAKYAAEDAWITLKFYKTFQNTLDPN 479

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L   L      E    L    +   G +I+   + KL      + K L  +I +L+ G  
Sbjct: 480 L---LALADMHEFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIYELS-GEN 535

Query: 233 RSSRQTYALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF    +           T +S+L+           IL          
Sbjct: 536 FNINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAYRELYKLQS 595

Query: 290 LKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                L      D   R+  +    G + TGR S      QN+P                
Sbjct: 596 TYCEPLLALAKKDEGSRIYTSFLQTG-TSTGRLSSKNPNLQNIP---------------- 638

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                     G  +  VR C  A  G   V  D + IE R+LA  + +   ++AF N ED
Sbjct: 639 --------ARGSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDED 690

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T    F         + RA+ K +   L Y  G+                      
Sbjct: 691 IHARTAISIFG----SSDGQNRAVAKSINFGLIYGMGSSKLAN----------------- 729

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                      +  +     +   + +      + +  + +   
Sbjct: 730 ---------------------------QVNITRAEAKEYIERYFKAFATIKEFLESIKIS 762

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                           +     R+           Y +  ++  
Sbjct: 763 AKNEG--------------------------FVQTLLGRKR----------YFDFKSATP 786

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDTPYFSV 644
           M+   +  +    + Q  + D++   M            ++L +HDE++ E  D      
Sbjct: 787 MQMAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKNASMLLQIHDELIFEVKDEFAQEF 846

Query: 645 -GTLCSLMTKNPSWAKGLPLK 664
                  M +   +   +PLK
Sbjct: 847 GRATQKTMEEI--YTLNVPLK 865


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/673 (15%), Positives = 192/673 (28%), Gaps = 140/673 (20%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLFE 76
           GV   +++  +     A     +             + + L +   D T++C       +
Sbjct: 256 GVALLSDKEGVYGLGIALTKGEIYYVPVEGLLTGDYICAALKEI-ADSTILC-----SID 309

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHL-TKMEEGKA- 130
                K +G++  +     T V            +  +     L+ +         GK  
Sbjct: 310 VKSMLKHVGLE-DADHVFDTGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDS 368

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           L A + K S     Y C  A    A+           E       R     + E  L   
Sbjct: 369 LKAAWEKSSDGLMSYACHLAYT--AYATREPIENALKETEMWNVYR-----EIELPLIFT 421

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
             ++   G R+  + +    E +     +L++ I +       +      L + LF   G
Sbjct: 422 LDSMEKWGIRVKGEELKSYGEKLQVRIAELEKLIYEQAGEEF-NINSPKQLGVILFEKMG 480

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
           I     ++    T   IL      Q   + IL     +       + LS  + +DGR+  
Sbjct: 481 IPGGRKTKTGYSTAADILEKLAPEQPIVNDILEYRQLTKLKSTYADGLSAVIEADGRIHS 540

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T      + TGR S      QN+P                                +R  
Sbjct: 541 TFNQT-ITATGRISSTEPNLQNIP------------------------VRMELGRLIRKV 575

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +  +G   + AD + IE RVLA ++G++  I+A+   EDI+  T ++ F+ P D+V+  
Sbjct: 576 FVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTDL 635

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   + Y        +      L + +          FE + + +     +  
Sbjct: 636 QRRNAKAVNFGIVYG-----ISSFGLSQDLSITRKEAAEYIEKYFETYPKIKGFLDGLVA 690

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
              E      ++G    +           +                              
Sbjct: 691 DGKEKGYVSTMLGRRRPI---------PELKSGNFMQRS--------------------- 720

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                                      G+   +N+                    Q  + 
Sbjct: 721 --------------------------FGERVAMNSPI------------------QGTAA 736

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKG 660
           DI+   M    +          +VL VHDE++ ET      +V  +    M         
Sbjct: 737 DIIKIAMNRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGAVH--LS 794

Query: 661 LPLKAEGYEAKRY 673
           + L  + +E   +
Sbjct: 795 VELDVDMHEGNSW 807


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 188/667 (28%), Gaps = 134/667 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
             Y E+  I   +   ++  +    +            +  DE+      +S   R +  
Sbjct: 328 DNYHEEP-ILGFSI-VNETGLYYIPKETAIQ-SEAFKSWAEDESKKKWVFDSK--RSVVA 382

Query: 82  -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137
            +  GI++    +    + A      +S  +          +  ++K E      A+   
Sbjct: 383 LRWQGIELKGTEF-DALLAAYIINPGNSYDDVASVAKEYGLN-IVSKDEAVYGKGAKHAV 440

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
            +         R                      EL++ L      E  L L+   +   
Sbjct: 441 PAEKELADHLARKAAAVNSLRDKLLHALKENNQLELYEDL------ELPLALILGEMESM 494

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D++ + ++ E +  + K+ +E I  +      +      L + LF   G+ +V  +
Sbjct: 495 GVKVDVERLKRMGEELRAKLKEYEEKIHDIAGEPF-NINSPKQLGVILFDKLGLPVVKKT 553

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            IL            +  L +    D     T      
Sbjct: 554 KTGYSTSADVLEKLADKHDIVAYILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFNQAL 613

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNG 373
           ++TGR S      QN+P                                +R   +     
Sbjct: 614 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEPD 649

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             +  AD + IE RVLA I+ ++  I+AF N  DI+  T    F+   D+V++  R   K
Sbjct: 650 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAK 709

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +   +                G+     SQN                            
Sbjct: 710 AVNFGIV--------------YGISDYGLSQN---------------------------- 727

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +           +     GV    ++  +          +   +R   +P L  R 
Sbjct: 728 --LGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYV--TTLMQRRRYIPELTSRN 783

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                 + + +NT                   +Q  + DI+ + 
Sbjct: 784 FNL---------------RSFAERTAMNT------------------PIQGSAADIIKKA 810

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M +             ++L VHDE++ E P      +  L   +M         +PLKA+
Sbjct: 811 MIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILEKLVPEVMEHALD--LDVPLKAD 868

Query: 667 GYEAKRY 673
                 +
Sbjct: 869 YASGPSW 875


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 99/685 (14%), Positives = 185/685 (27%), Gaps = 151/685 (22%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVM 67
           ET    P            A +   A A + E          +S     +  +L D  + 
Sbjct: 329 ETHGDNP----------HHADVIGLALATE-ERQYFLPFDVLKSEEAEPVRAWLADSEIP 377

Query: 68  CVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSE- 120
                  ++           GI      +    + A       S   L         +  
Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAAF-DVHLAAYLLDPTESNQTLSGLASKYGLAYL 432

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              +   GK         +    P     + H+    L         E      + L   
Sbjct: 433 QADEDVFGKG--------AKYKVPDVEKLSEHMARKCLAVSELVPIQEKELAANEMLPLF 484

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E  L  +   +  +G  ++ + + +L      +  KL ++I ++      +      
Sbjct: 485 HDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEF-NLNSPKQ 543

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   LF+   + ++  ++    T   +L           LIL     +      +  L +
Sbjct: 544 LGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLLK 603

Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            +SS  G++    +   A  TGR S      QN+P                         
Sbjct: 604 EISSVTGKVHTYYRQTIA-ATGRLSSQYPNLQNIP------------------------I 638

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +    G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T   
Sbjct: 639 RLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMD 698

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F   +D+V    R   K +   + Y               L+                 
Sbjct: 699 VFGVGMDEVDSNMRRSAKAVNFGIVYG-----ISDYGLSQNLN----------------- 736

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +           +    QGV +    + +         
Sbjct: 737 ----------------------ITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVK 774

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    ++      L +      R      
Sbjct: 775 TLLE--------------------------RRRYLPEINASNFNLRSFA---ERTAM--- 802

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+   M +  K          ++L VHDE+V E P+     +  L  
Sbjct: 803 ---NTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVP 859

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M++       +PLK+E    + +
Sbjct: 860 DVMSQALK--LSVPLKSEVSYGENW 882


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 102/654 (15%), Positives = 177/654 (27%), Gaps = 150/654 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAM--PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              A  D P  L    E  A+  P++LL    D     V H+          + GI+ P 
Sbjct: 346 VGLAMGDPPAWL----EGEALADPAELL----DSGARLVGHDLKPLYNWL-YSQGIE-PP 395

Query: 91  KRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                T++ A       S   L + C      E                           
Sbjct: 396 APAFDTALAAYLLDPSRSSYDLADLCRQHGLGELP------------------------- 430

Query: 148 TRANHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
              +    W           R +EA            + E  L  +   +   G  ID  
Sbjct: 431 -PGDTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAEMEAVGVGIDPA 489

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----T 260
            + ++   + +   ++ ++I +L  G+  +      L   LF   G+     ++     T
Sbjct: 490 ALHEMSVELERRILQVSQEIYELA-GMQFNISSPKQLGDVLFGKLGLPSGKKTKSGGYST 548

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            +L+    +      ++ L + ++ DGR+  T     A  TGR 
Sbjct: 549 DAEVLEELAAAYPIAARVLDYRTLTKLKGTYVDALGQLIARDGRIHTTFAQTVAE-TGRL 607

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +A  G  L+ AD
Sbjct: 608 SSKDPNLQNIP------------------------IRIEEGRRIRKAFVARPGCVLLSAD 643

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RV+A  +G+    +AF + +DI+  T A+ F  P+D+V+ E R   K +   L 
Sbjct: 644 YSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLI 703

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               + + +        + F  +     +    + +  E      L G
Sbjct: 704 YGQT-----DFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDG 758

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               L           +      + +    +                             
Sbjct: 759 RRRPL---------PEINHRVFTIRQNAERMAINTPIQGTAADL---------------- 793

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                 +     V+                               +R      M      
Sbjct: 794 -----MKRAMIAVRRAMREEGL----------------------SAR------MI----- 815

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                L VHDE+V E P      +  L    M         +PLK E      +
Sbjct: 816 -----LQVHDELVFECPVGEVDRLARLVRREMEGAMK--LDVPLKVEVKVGPDW 862


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/678 (14%), Positives = 188/678 (27%), Gaps = 133/678 (19%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
            S   L   G         +     +  +      D+    +  S    +L D  V    
Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNKNGH-YFIDKDTALS-SSKFKAWLEDGRVKKTV 369

Query: 71  HNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS--EHLTKMEE 127
            N    R +   K  G +I         + +       +  +            +   E 
Sbjct: 370 FNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSDEA 426

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                    KG+  S       A HV        Y K  +E      ++       E  L
Sbjct: 427 VYG------KGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPL 480

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
            ++   +  +G +ID   + ++ E + ++ +K++  I +       +      L + LF 
Sbjct: 481 AIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF-NINSPKQLGVVLFE 539

Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DG 303
              + ++  ++    T   +L     T      IL            +  L + +   DG
Sbjct: 540 KMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQSTYIEGLKKVIHESDG 599

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           ++         ++TGR S      QN+P                                
Sbjct: 600 KVHTRFNQT-LTQTGRLSSVDPNLQNIP------------------------IRLEEGKK 634

Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   + S     +  AD + IE RVLA IA ++  I AF +  DI+  T    F+   +
Sbjct: 635 IRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +                    G+     SQ+                 
Sbjct: 695 EVTSNMRRQAKAVNF--------------GIVYGISDYGLSQS----------------- 723

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                          +   A     + +     GV +    +            +    R
Sbjct: 724 -------------LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYV--TTLLHR 768

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
              +P +  R                       + + +NT                   +
Sbjct: 769 RRYLPEITSRNFNL---------------RSFAERTAMNT------------------PI 795

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
           Q  + DI+ + M    K          ++L VHDE++ E P+     +  +   +M    
Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
                +PLK +    K +
Sbjct: 856 E--LEVPLKVDYSYGKTW 871


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 100/693 (14%), Positives = 196/693 (28%), Gaps = 155/693 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET S             ++A I   ++   +        T         +   
Sbjct: 317 SIIAFDTETTSID----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQ 366

Query: 56  DLLQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110
              + +    +     + HN  ++  + +    + +  +++  T +LA         ++ 
Sbjct: 367 SAKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMD 423

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +  L L N+     +    K       +           +     A+     Y       
Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 477

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L   L    + E D   +   + + G ++D   +  L +    E K L E+I  L  
Sbjct: 478 EPHL---LDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALC- 533

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      +   LF    +      +    T + +L+           IL+    + 
Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAK 593

Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   L +      + R+  +    G + TGR S      QN+P   +  +      
Sbjct: 594 LYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 648

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               +SC IA  G   +  D + IE R+LA  + ++  + AF N
Sbjct: 649 --------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKN 688

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T    F     + + E R+I K +   L Y  G K                  
Sbjct: 689 DEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKN------------- 731

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                           K+     +   + +      +   ++ +
Sbjct: 732 -------------------------------LKIEANLAKTYIEKYFENFTSIKSYFEKV 760

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                              I   S R+           Y +   
Sbjct: 761 KNEAKANG--------------------------FISTLSGRKR----------YFDFEN 784

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641
           ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE++ E  D   
Sbjct: 785 AKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEVKDELC 844

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + V     +M         + LK     AK++
Sbjct: 845 ENFVKKTSDIMENIVK--LKVKLKTSSSIAKKW 875


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 98/711 (13%), Positives = 187/711 (26%), Gaps = 173/711 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52
           + +D ET     +      A      +   + A                           
Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYVPVGHGGKDMFAEKPDQLP 395

Query: 53  ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106
              + + L   L D++V+ +  N  ++  + ++  GI+I    +  T V++         
Sbjct: 396 LALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAP--YDDTIVMSFDLDAGQSL 452

Query: 107 --SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
               +  A    LN      K     GK+ I+        +                  E
Sbjct: 453 AGHGMDEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKAT-----------------E 495

Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211
           Y   D + T  L+K        E          R L  +   +   G ++D + + +L  
Sbjct: 496 YAAEDADVTLRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRLSA 555

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH 267
                   L+ +I  L      +   T  L   LF   G          +  T  +IL  
Sbjct: 556 EFTAGIAALETEIHGLAGQPF-AIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQ 614

Query: 268 SNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVF 325
             +        +L+    S       + L   ++ D  R+  +    GA +TGR S    
Sbjct: 615 LKVQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGA-QTGRLSSTDP 673

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   +A  G  ++ AD + IE
Sbjct: 674 NLQNIP------------------------IRTEVGRQIRHAFVAEPGNVILAADYSQIE 709

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+ A +A      +AFANGEDI+  T  + F     +V+++ R   K +  A+ Y    
Sbjct: 710 LRLAAHMADVPALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG--- 762

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      L++         +  +E +     +     ++       + L G     
Sbjct: 763 --ISRWGLAGRLEISADEAQDMISRYYERFPGISLYITDTIEKARSKGYTETLFGRK--- 817

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                      +    +   +G                                      
Sbjct: 818 ------TWFPRIKASVQHERQGAERAAINAPIQGTSADII-------------------- 851

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
            +   + +    +       ++                          +           
Sbjct: 852 -KRAMARMGPALAAEGLHDVKM--------------------------LLQVHD------ 878

Query: 626 LTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
                E+V E P+        +   +M     P     +PL  E      +
Sbjct: 879 -----ELVFELPEGDVEQASAVIRRVMEGAAEPIVKLSVPLGVEIGHGPSW 924


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 94/671 (14%), Positives = 191/671 (28%), Gaps = 143/671 (21%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDLLQYLRDETV---MCVAHNSLFE 76
           ++A +   ++ +D +               + +   +    +    +     + HN  F+
Sbjct: 359 QEAQLVGFSFCFDGKNAYYVPVGHRYLGVGNQLNLQEAKSAI--SRIFTHPLIGHNLKFD 416

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN-ACLALNFSEHLTKMEEGKALIA 133
             L  +TLG++    +   + +L+       P  L        N +         K    
Sbjct: 417 FSLIYRTLGLE-HIGKIYDSMILSWLYDSIAPVGLDKQMLKWFNHTMISFDSVVPKG--- 472

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQ 192
              +          T+     A   F  Y + + E  +  +   L    + E     +  
Sbjct: 473 ---ENFSQVNIITATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYPFIKVLM 529

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G R+D+ L+  L++  ++   +L + I  L  G   +      L   LF   G+ 
Sbjct: 530 DMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLC-GETFNLNSPQQLAHILFENLGLK 588

Query: 253 LV---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA--VSSDGRLRG 307
                     T +  L     +    DLIL+   S+      +  L      +   R+  
Sbjct: 589 PGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNETHRIHT 648

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +    G + TGR S      QN+P                                +R  
Sbjct: 649 SFLQNG-TATGRLSSKSPNLQNIP------------------------VRREEGRKIRQA 683

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I+  G  L+  D + IE R+LA    +   +++F   +DI+  T A+ F    ++ + +
Sbjct: 684 FISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLFG---EQEAMQ 740

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           +R I K +   L Y  G+                                          
Sbjct: 741 KRFIAKSINFGLIYGMGS------------------------------------------ 758

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
              + +   ++     +   +++ A    +        E           +  RR  +  
Sbjct: 759 --KKLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQEEFLLENGYSQTLLGHRRYFDFK 816

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
           R         +                                         +I Q  + 
Sbjct: 817 RATDFMKANFLREG------------------------------------INSIFQGSAA 840

Query: 608 DILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLP 662
           D++   M    K        ++L VHDE++ E P     +    +  +M     +   +P
Sbjct: 841 DLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAENYAKEVADIMNSI--YKLEVP 898

Query: 663 LKAEGYEAKRY 673
           LK        +
Sbjct: 899 LKCGIAIGTNW 909


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 101/692 (14%), Positives = 188/692 (27%), Gaps = 163/692 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSA 52
           + +  D ET S             E   I   ++A+++                      
Sbjct: 321 NIVSFDTETTSL------------ENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEK 368

Query: 53  M-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGL--PSS 108
           +    + + L       + HN  F+  + K      I     +  T +L        P  
Sbjct: 369 IALKAIEKILE---KKVIGHNLKFDFKMLK---DYKIKTPTPFADTMILGWIIDPDSPVG 422

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L +     LN      K   GK           +       +     A      Y     
Sbjct: 423 LDSLAKRYLNHQNIKYKEIVGKNQN------FSEIDIKTAAKYASEDAIITLKLYEVLKE 476

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +   E+      + + E  L  +   +   G ++D++ + KLQ+ + Q+ + L ++I  L
Sbjct: 477 KTWEEVK---WDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNL 533

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                 + +    L   LF +  + +         T + +L+    T    + +L     
Sbjct: 534 AGSEF-NIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYRKF 592

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L E    D   +    F    + TGR S      QN+P            
Sbjct: 593 DKLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIPTSTEIN------ 646

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R+  I       +  D + IE R+LA  + +   I+AF 
Sbjct: 647 --------------------IRNAFITDK--LFISLDYSQIELRLLAHFSKDPHLIEAFL 684

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N +DI++ T AK F    +  +KE R+I K +   L Y  G                   
Sbjct: 685 NDKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGP------------------ 723

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                      + +    +     +   + +      V    + 
Sbjct: 724 --------------------------KKLSETINVSTKEAKEFIEKYFENFSTVKDFIEK 757

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                            RR  +                                      
Sbjct: 758 TKVETKEKGYVETLFKRRRFFDFN------------------------------------ 781

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GYDIVLTVHDEIVSETPDTPY 641
           ++       Y  +    I Q  + DI+ + M +         ++L +HDE++ E      
Sbjct: 782 SANARTLAAYEREAVNTIFQGSAADIIKKAMIDIKNKFPSSKMILQIHDELIFEI--DNK 839

Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +M         +PLK     AKR+
Sbjct: 840 DEAYEYKEIMENAIK--LEVPLKVGISFAKRW 869


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 99/685 (14%), Positives = 185/685 (27%), Gaps = 151/685 (22%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVM 67
           ET    P            A +   A A + E          +S     +  +L D  + 
Sbjct: 329 ETHGDNP----------HHADVIGLALATE-ERQYFLPFDVLKSEEAEPVRAWLADSEIP 377

Query: 68  CVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSE- 120
                  ++           GI      +    + A       S   L         +  
Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAAF-DVHLAAYLLDPTESNQTLSGLASKYGLAYL 432

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              +   GK         +    P     + H+    L         E      + L   
Sbjct: 433 QADEDVFGKG--------AKYKVPDVDKLSEHMARKCLAVSELVPIQEKELAANEMLPLF 484

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E  L  +   +  +G  ++ + + +L      +  KL ++I ++      +      
Sbjct: 485 HDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEF-NLNSPKQ 543

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   LF+   + ++  ++    T   +L           LIL     +      +  L +
Sbjct: 544 LGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLLK 603

Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            +SS  G++    +   A  TGR S      QN+P                         
Sbjct: 604 EISSVTGKVHTYYRQTIA-ATGRLSSQYPNLQNIP------------------------I 638

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +    G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T   
Sbjct: 639 RLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMD 698

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F   +D+V    R   K +   + Y               L+                 
Sbjct: 699 VFGVGMDEVDSNMRRSAKAVNFGIVYG-----ISDYGLSQNLN----------------- 736

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +           +    QGV +    + +         
Sbjct: 737 ----------------------ITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVK 774

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    ++      L +      R      
Sbjct: 775 TLLE--------------------------RRRYLPEINASNFNLRSFA---ERTAM--- 802

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+   M +  K          ++L VHDE+V E P+     +  L  
Sbjct: 803 ---NTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVP 859

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M++       +PLK+E    + +
Sbjct: 860 DVMSQALK--LSVPLKSEVSYGENW 882


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 102/670 (15%), Positives = 186/670 (27%), Gaps = 121/670 (18%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLLQYLRDETVMCVAHNS 73
           L  +          I   A     E     +  +     + S L   L DE +  + H+ 
Sbjct: 330 LKTITEENNIVTDRIVALAMTTTGEIQYYIEFKDFKESDIISPLKDILEDEHIRIIGHDL 389

Query: 74  LFERILFKKTLGIDIPSKR-WICTSVLARTNGLPSS---LKNAC-LALNFSEHLTKMEEG 128
             E I        +I     +  T V         S   LK+     L       +   G
Sbjct: 390 KKEII---HFYPYEIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVG 446

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           K         +           NHV+      +Y +  +E  + + K      + E  L 
Sbjct: 447 KGKNQL-SLWAAPENEVKALLCNHVKVIAELAKYIQEKIE-DQGIHKLYY---EVELPLV 501

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +  ++   G ++D +++L L+    +   KL  +I     GI  +      L   LF  
Sbjct: 502 EVLASMEFLGIKVDRNMLLALEVEFKEIIDKLTSEIY-SLAGISFNINSPKQLGEVLFEK 560

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304
            G+     ++    T   +L            I      +      ++ L   ++    R
Sbjct: 561 LGLPPTKKTKTGYSTNADVLEKLQDQHEIIPKISEYRQVTKLKTTYVDGLLSIINPVTNR 620

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  +      + TGR S      QN+P                                +
Sbjct: 621 IHSSFNQTV-TATGRISSTEPNLQNIP------------------------VRLEMGRRL 655

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   I+  G + + AD + IE RVLA IA +D  I AF   +DI+  T ++ F  P+++V
Sbjct: 656 RKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVPMEEV 715

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +   R   K +   + Y               L++          S FE +   + +   
Sbjct: 716 TSLMRGDAKAVNFGIVYG-----ISDFGLSQNLNIPVSKAKKYIESYFEKYPSIKEYMHN 770

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
           + ++  E      L+           R     +     ++      +        +    
Sbjct: 771 IVEEGKEKGYVVTLLNR---------RRYLPELKSSNFNIRSFGERIAMNTPIQGSA--- 818

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                                    ++     Y     EN    
Sbjct: 819 -------------------------------------ADIIKIAMIAVYNRLKAEN---- 837

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663
                              +   VHDE++ E P+     V  +    M         +PL
Sbjct: 838 -------------YDAKLIL--QVHDELIIECPENEIEEVSKILKESMENAIEMV--VPL 880

Query: 664 KAEGYEAKRY 673
           K +   A  +
Sbjct: 881 KVDLSYANNW 890


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 100/681 (14%), Positives = 205/681 (30%), Gaps = 139/681 (20%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVA-H 71
           + K+G+    E   +        D  +     +    +S +   L   +   +   +A  
Sbjct: 326 IEKIGLSIVREN-ELIAVGITLSDTEIYYIPVSGFVTESYLADRLSDVVSVASNRNIASA 384

Query: 72  NSLFERI-LFKKTL--GIDI-PSKRWICTSVLARTN---GLPSSLKNAC-LALNFSEHLT 123
           N   + + +F+K    G  +   K +I T++ A            ++     L+ +    
Sbjct: 385 NIK-DYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSK 443

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               GK  I +    + D+                +  Y   D    +   + +  L + 
Sbjct: 444 TELLGKLSINKAVNEAEDNLIKYA-------CLSSYAYYKCADKITEQLKSENMYELFET 496

Query: 184 -ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +  +G  +D   ++   +++  +   L+++I +       +      L 
Sbjct: 497 IEMPLIFVLFEMQQQGISVDKQALVDYSKVLGTKISVLEKEIYEAAGEEF-NINSPKQLG 555

Query: 243 MYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           + LF   G+     ++    T   +L            IL     +       + L++ +
Sbjct: 556 VILFERLGMPNGKKTKSGYSTAADVLEKLAPDYPVVSKILEYRQLAKLKSTYADGLTQYI 615

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           S DGR+ GT      + TGR S      QN+P                            
Sbjct: 616 SEDGRIHGTFNQT-ITATGRISSTEPNLQNIP------------------------IRME 650

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +  +G   + AD + IE R+LA ++G++  I+A+ +  DI+  T A+ F  
Sbjct: 651 MGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATAAQVFGV 710

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+++V+ EQR   K +   + Y        +      L                      
Sbjct: 711 PLEEVTDEQRRNAKAVNFGIIYGMS-----SFGLSQDLS--------------------- 744

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +     +   + + A +  +      L              +
Sbjct: 745 ------------------ISRKEAKEYIERYFASYPTIKTFIDGLVSDAKEKGYSLTMYN 786

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            RR     +                          G+   +                   
Sbjct: 787 RRREIPEIKSSNFMQ-----------------RSFGERVAM------------------N 811

Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
             +Q  + DI+   M N             ++L VHDE++ ET +    +V  +    M 
Sbjct: 812 APIQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMK 871

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
              S    +PL+ +  E K +
Sbjct: 872 NAVS--LKVPLEVDLKEGKDW 890


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 88/660 (13%), Positives = 182/660 (27%), Gaps = 132/660 (20%)

Query: 27  QAVITLCAYAWDDEPV-KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
                  A+  + +     +      +    +   L  E    + H+         K  G
Sbjct: 328 DGEFFGLAFCAEPDVALCCFPDAMTDSYLERVRPVLAGERPGKIGHDLKRIMTAIGK-KG 386

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           + +    +  T V +       S  +          + ++   K                
Sbjct: 387 VALRGLSF-DTMVASYLLNPNRSDHSLA------TLVFELLGVK----WEQGPGARGGND 435

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLD 204
               A    A +    +  ++    +     L+P  +  E  L  +  ++ + G+ +D D
Sbjct: 436 GRETAMRGAAEEAHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASMEEVGFSVDTD 495

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTL 261
            + +L + +  +  +L+  I  L  G   +      L   LF    +           T 
Sbjct: 496 QLSELGKELESQLSRLESRIFALA-GEHFNINSPKQLAEVLFQRLKLTPLKRTKTGYSTN 554

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
             +L    +T      +LN  + +      ++ L        GR+  +      + TGR 
Sbjct: 555 VEVLQRLAVTHELPAEVLNYRSLAKLKSTYVDVLLRLAERTSGRIHTSFNQTV-TATGRL 613

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +AS G +L+ AD
Sbjct: 614 SSSEPNLQNIP------------------------VRTEVGRRIRQAFVASEGHRLLSAD 649

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA ++ +   I AF  G D++ +T A+ F    + V+ E R   KV+     
Sbjct: 650 YSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRAKVINF--- 706

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     +                               + ++  
Sbjct: 707 -----------GIVYGMSPFGLAA------------------------------ELEISQ 725

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               L    +   + GV             +                            +
Sbjct: 726 EEAALYIDRYFQIYHGVKAFIDRTICEARELG--------------------------FV 759

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617
                RR    ++K     +     +L              +Q  + D++   M      
Sbjct: 760 STFWGRRRAIPELKSSDQTVRQLGERL---------AVNTPIQGSAADLIKVAMIAISRR 810

Query: 618 ---TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +    ++L +HDE++ E P+        +    M    +    +PLK +      +
Sbjct: 811 LRSEQLETRMILQIHDELLFEVPEVELDVARRMATEEMEWAAT--LSVPLKVDIGVGTSW 868


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 92/661 (13%), Positives = 194/661 (29%), Gaps = 135/661 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGID 87
            I   A   +   +           P    ++  DET      ++   R +   +  GI+
Sbjct: 331 DIVGMAVQNEKG-IFYLPTESTLKSP-VFKKWAEDETKKKTVFDAK--RTVIALRRHGIE 386

Query: 88  IPSKRWICTSVLARTNGLPSS---LKNACLALNFSE-HLTKMEEGKALIARFCKGSIDSP 143
           +    +    + +       S     +      F+E    +   GK          +  P
Sbjct: 387 LKGIEF-DLLLASYLINPSESPSDFADVAKLHGFNEVQSDEAVYGKGAK-------LKLP 438

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
             +    +  +      +  +   +  +E  + L    D E  L L+   +   G ++D+
Sbjct: 439 DREIYEEHIARKAVGLTKLAETCRDVLKENDQ-LSLFYDLEMPLALILADMEWTGVKVDV 497

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           D + ++ + +    ++++++I +L      +      L   LF   G+ ++  ++    T
Sbjct: 498 DRLTEMGDELHNRLQEIEKEIYELAGQEF-NINSPKQLGHILFEKMGLPVIKKTKTGYST 556

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L     +      IL            ++ L + V  +     T      ++TGR 
Sbjct: 557 SADVLEKLESSHEIVRYILEYRQLGKLQSTYIDGLLKVVHQNTHKVHTRFNQALTQTGRL 616

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   + S     +  A
Sbjct: 617 SSADPNLQNIP------------------------IRLEEGRKIRQAFVPSEKDWVIFSA 652

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA I+G+   I+AF    DI+  T    F+   ++V+   R   K +    
Sbjct: 653 DYSQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNF-- 710

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+     SQN+                               + 
Sbjct: 711 ------------GIVYGISDYGLSQNL------------------------------GIT 728

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   + + A +  V +   ++            +    R   +P +  R       
Sbjct: 729 RKEAGQFIERYFASYPDVKEYMDEIVREAKRKGYV--TTLLHRRRYLPEITSRNFN---- 782

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                           + + +NT                   +Q  + DI+ + M +  +
Sbjct: 783 -----------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDMAE 813

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E P     ++  +   +M         +PLK +      
Sbjct: 814 RLKKEQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHAVE--LKVPLKVDYAYGPT 871

Query: 673 Y 673
           +
Sbjct: 872 W 872


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 91/702 (12%), Positives = 192/702 (27%), Gaps = 158/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             L +D ET SP P            A +   +++  ++          +++        
Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393

Query: 55  SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            ++ ++L       V  V  N  ++ I+ +   G  + + ++  T + +      G   +
Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQF-DTMLASYVIQPEGRRHN 451

Query: 109 LKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +      L N+         G                    +       +   EY   D 
Sbjct: 452 MDVLAKDLLNYDTITYDDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 496

Query: 168 EATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L++                  E  L  +   +   G  +D+    +L     +E 
Sbjct: 497 DITFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 556

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLA 274
           + L+ +I +   G   +   T  L+  LF    +  V  +     T   +L         
Sbjct: 557 RHLESEIHRQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPI 615

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            + +L+    +      ++ L + V+   GR+  +     A  TGR S      QN+P  
Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 672

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWI 392
                                         +R      +   +++  D + IE R++A I
Sbjct: 673 ----------------------IRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++A+ +G DI++ T A  +  P  +V+ E R   KV+  ++ Y           
Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YG 765

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +             +   +S+   M +   +      L G    +V      
Sbjct: 766 LSRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIV------ 819

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    K   E    V                                   ++   +
Sbjct: 820 ---DINSTHKSAKEAAKRVAINSPVQGTSADMI---------------------KIAMIN 855

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +  D    +  +                             +         +V  VH   
Sbjct: 856 IHEDIEKKHYRSR---------------------------MLLQVHDE---LVFEVH--- 882

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         ++   M         LP+  EG     +
Sbjct: 883 -----KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917


>gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 95/698 (13%), Positives = 181/698 (25%), Gaps = 159/698 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-------- 56
             D ET S   +             I   + +           +   A+ +         
Sbjct: 355 AFDCETDSLDRI----------HTRIVGFSLSRRAGTGIYVPLSVPDALLTQTLIEKQDA 404

Query: 57  ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110
              L +           HN  F+  +  ++ G+  P  R   T V A          SL+
Sbjct: 405 FVQLERLFSVPACTLAMHNGKFDYEVL-RSNGLAEPRCRIADTMVAAWLLDPDRSAYSLE 463

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L            K                           +    Y   D + 
Sbjct: 464 ALAADKLGLETIPYTDVVPKG------------------STFADIPLEQAVPYAAEDADL 505

Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           T +L++  +P            + E  +  +   +   G  I+   ++   E +  E ++
Sbjct: 506 TWQLYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIER 565

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276
           +  +I +L      +   T  L+  LF    +     ++    T   +L           
Sbjct: 566 IRREIYELVGHEF-NVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPR 624

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            IL+    +      ++TL   V  + R+  +    G + TGR S      QN+P     
Sbjct: 625 KILDYRLKTKLFSSYVDTLPLMVDGNDRIHTSFIQTG-TATGRLSSREPNLQNIP----- 678

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R    A  G +L+ AD + IE  +LA ++G+ 
Sbjct: 679 -------------------VRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSGDP 719

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
               AF+ G D++  T A  F    D V+ + R   K +   + Y   A           
Sbjct: 720 NLCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAG-----A 774

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L + +        + F+ +    +    M +   +    + + G          R   + 
Sbjct: 775 LGIPRTQAAEFIEAYFKTYAGVRNFMNEMVNAAQQSGFVETIFGR---------RRYIRA 825

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +    K    G   V        +                          +    DV   
Sbjct: 826 INSSSKIEKSGAERVAVNTPIQGSAADIV---------------------KKAMIDVAAA 864

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                +                               +         ++L        E 
Sbjct: 865 LKKTGSPARL---------------------------LLQVHDE---LIL--------EC 886

Query: 637 P-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           P ++   +   +   M    S    +PLK       R+
Sbjct: 887 PQESAAETASLIKQTMENVVS--LRVPLKVSVEIGPRW 922


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 94/687 (13%), Positives = 192/687 (27%), Gaps = 151/687 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAV----ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           D E        K G  A A Q      +   A    +    L      +   S  L+ L+
Sbjct: 327 DFE-DLLVQAQKSGKVALALQGRREKGLISVALCLSEGQNYLLPLNSSTETTSFALKLLQ 385

Query: 63  ----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
               D  +    +++  +        GI+I    +    +         S ++       
Sbjct: 386 NICVDSKIKKCCYDTKADL-WLLHYYGIEINQPGF-DVMLADYLLNPGKSARSLPET-AL 442

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           S     ++EG          +                            +   +  + L 
Sbjct: 443 SHLDIVLQEGSE----TYLPASAEVISR--------------LVDILQSKLLLQEQENLY 484

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              D E  L  +  ++   G  +D + +  + E + ++ + L  DI +   G I +   T
Sbjct: 485 --YDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQVLTTDIYEHA-GEIFNINST 541

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    +     ++    T  ++L           L+L     +      ++ L
Sbjct: 542 KQLGSILFEKLKLKAGKKTKTGYSTDVTVLEELAGDHPVVSLLLEYRQLAKLKSTYVDGL 601

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           +  ++   G+L  T      + TGR S      QN+P                       
Sbjct: 602 TGLINPQTGKLHTTFHQAV-TATGRLSSSEPNLQNVP----------------------- 637

Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                A   +R   +       +  AD + IE R+LA IA ++  + AFA  +DI+  T 
Sbjct: 638 -IRLDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTA 696

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F   +D+V+ E R   K +   + Y               + + +        + F 
Sbjct: 697 SEVFGVAMDEVTPEMRGRAKAVNFGIVYG-----ISDFGLAKDIKVTRKEAGRYINNYFN 751

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            +   +++   +  +  E      ++           R     +    + +         
Sbjct: 752 RYSGVKAYIDRVIREAREKGYVTTILNR---------RRYLPDLFSSNRVVRSF------ 796

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                                    G+ + +NT           
Sbjct: 797 -----------------------------------------GERTAMNTP---------- 805

Query: 594 GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                   +Q  + DI+   M    +          ++L VHDE++ +   +    +  L
Sbjct: 806 --------IQGSASDIIKLAMVLIYREMRKRKLSSTMILQVHDELIFDVVASEVEEMQNL 857

Query: 648 CS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               M         +PL  +      +
Sbjct: 858 VKYYMENAVE--LSVPLVVDMKIGPNW 882


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 97/665 (14%), Positives = 199/665 (29%), Gaps = 137/665 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TL 84
            Q  I   A A ++         E       L+Q+L+DE       ++   R +      
Sbjct: 328 HQGDILGLAIAHNNG-CYYIPTDEALR-SEALIQWLKDERKEKWLFDAK--RAVVALGWK 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLA--LNFSEHLTKMEE--GKALIARFCKGSI 140
            I++    +    + +      +S          +   H+ + E   GK    R      
Sbjct: 384 NIELAGSTF-DLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAVYGKGAKRR------ 436

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
              P +     H+          K  VE   +  ++L   ++ E  L ++   +   G +
Sbjct: 437 --IPDEKELGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVK 494

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D++ + ++ E +    ++L++ I +L  G+  +      L   LF    + ++  ++  
Sbjct: 495 VDVEQLEQMGEDLNARLEELEQTIHELA-GVSFNINSPKQLGEILFEKLQLPVIKKTKTG 553

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
             T   +L          D IL+           ++ L + V    G++         ++
Sbjct: 554 YSTSADVLEKLAGQHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFNQA-LTQ 612

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKK 375
           TGR S      QN+P                                +R   + S     
Sbjct: 613 TGRLSSTDPNLQNIP------------------------IRLEEGRKIRKAFVPSEKDWF 648

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + IE RVLA  A ++  ++AF    D++  T    F+   ++V+   R   K +
Sbjct: 649 ILAADYSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAV 708

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 709 NFGIVYG-----ISDYGLSQNL-------------------------------------- 725

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +         + + A +  V +    + +          +   +R   +P L  R   
Sbjct: 726 -GITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYV--TTLLKRRRYLPDLTSRNFN 782

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           +                   + + +NT                   +Q  + DI+ + M 
Sbjct: 783 Q---------------RSFAERTAMNT------------------PIQGTAADIIKQAMV 809

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
                         ++L VHDE++ E P      +  L  S+M +       +PLK +  
Sbjct: 810 QMASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAVE--LRVPLKVDVA 867

Query: 669 EAKRY 673
               +
Sbjct: 868 CGDTW 872


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/665 (14%), Positives = 194/665 (29%), Gaps = 135/665 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL 84
            +     +  +      +  E+   +           D  +    H+   F  I++ K  
Sbjct: 344 KLAGLCVSIKEGSSYFLNINERLTENEFLEGFKSIFEDGEIKKYGHDLKNF--IVYLKQN 401

Query: 85  GIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSI 140
           GI++    +  T + A             + A   LN +    +   GK   +    GS+
Sbjct: 402 GIELNGVAF-DTMIGAYIINPSRETYTISELAADFLNTNVKPIEEMAGKGK-SFLPFGSM 459

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           D          + +   ++    K D +        L      E  L  +   +   G++
Sbjct: 460 DVEELKNVVGLYPE--IIYKAMKKIDDKLNENDQLNLY--YKIELPLVRVLADMEFYGFK 515

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           I+++ +  +   + ++  +L   I +L      +      L + LF    + ++  ++  
Sbjct: 516 ININELTVISRQLDEKINQLTLKIYELAGEEF-NINSPKQLGVVLFEKLELPIIKKTKTG 574

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
             T   +L            IL            +  L   ++   G++  +      + 
Sbjct: 575 YSTDAEVLEELAEKHEIVSNILEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFNQTV-TV 633

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375
           TGR S      QN+P                                +R   +  +G  K
Sbjct: 634 TGRISSTEPNLQNIP------------------------IKLEMGRNIRKAFVPCDGNYK 669

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LV AD + IE RVLA I  ++  I AF N EDI+ +T +K F  P ++V+   R+  K +
Sbjct: 670 LVDADYSQIELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAV 729

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              +                G+     S++                              
Sbjct: 730 NFGIV--------------YGIGDFSLSKD------------------------------ 745

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +           +  K+  V +   D+                              K
Sbjct: 746 LGITRKEARNYIDGYLDKYANVRKYMHDIVAQ--------------------------GK 779

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
               +    +RR    ++K     + +      R            +Q  + DI+   M 
Sbjct: 780 EFGFVTTMFNRRRYLPELKASNFNVRSFG---ERIAM------NTPIQGSAADIIKIAMV 830

Query: 616 NAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
                    +    ++L VHDE++ E  ++    V  +    M      A  +PL  +  
Sbjct: 831 MVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESMENAT--ALKVPLSVDVK 888

Query: 669 EAKRY 673
               +
Sbjct: 889 SGNSW 893


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 95/643 (14%), Positives = 193/643 (30%), Gaps = 134/643 (20%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + S L +   +E ++ + HN  +++++ ++  GI I    +    +++          
Sbjct: 195 EEILSYLKKIFENEHLLKIGHNIKYDKLVLQRY-GIIIRG--FEDIMLMSYVLDSGRYSH 251

Query: 111 NAC----LALNFSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           +        L +     K   + GK  I+     +     Y   ++N +    L     K
Sbjct: 252 DIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQEYVVEKSNVILQLWLL-LRAK 310

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              E    +++RL         +  +   +   G +ID  L+ ++   I+++   L+E I
Sbjct: 311 LIAEKLLHVYERLDK------PMIDIVAQMETTGIQIDRQLLAQVSSEISKDLLCLEEKI 364

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLIL 279
             L      +      L   LF          ++      T + +   +    +  + IL
Sbjct: 365 HNLAGEKF-NISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQINCQDNILIEHIL 423

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                S       ++L   ++   +   T     ++ TGR +      QN+P        
Sbjct: 424 EWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------- 475

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA   KKL+ AD + IE R+LA +A  +   
Sbjct: 476 ----------------VKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLY 519

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF N  DI+    ++ F   I++VS   R   K +  ++ Y              G+  
Sbjct: 520 QAFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIY--------------GISP 565

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            + +  +K                                 +      + +  +  G+ +
Sbjct: 566 FRLANQLKIK------------------------------RSEATDYIQRYFDRFPGIHE 595

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +                                           RR+ Y ++      
Sbjct: 596 YIEKTKNFARKNSYVETIF--------------------------GRRIYYDEINSPKVS 629

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633
           +        R            +Q  + DI    M    K          ++L +HDE+V
Sbjct: 630 IRNL---NERAAINAP------IQGSAADITRRAMILVHKSIECHKLSTKMLLQIHDELV 680

Query: 634 SETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673
            E P+     V  +    M     P     +PLK +   +  +
Sbjct: 681 FEAPEEEIEQVTNIITESMENACLPKINLRVPLKVDIKVSDNW 723


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/693 (14%), Positives = 196/693 (28%), Gaps = 155/693 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55
           S +  D ET S             ++A I   ++   +        T         +   
Sbjct: 285 SIIAFDTETTSID----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQ 334

Query: 56  DLLQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110
              + +    +     + HN  ++  + +    + +  +++  T +LA         ++ 
Sbjct: 335 SAKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMD 391

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +  L L N+     +    K       +           +     A+     Y       
Sbjct: 392 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 445

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              L   L    + E D   +   + + G ++D   +  L +    E K L E+I  L  
Sbjct: 446 EPHL---LDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALC- 501

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      +   LF    +      +    T + +L+           IL+    + 
Sbjct: 502 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAK 561

Query: 287 SAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   L +    D   R+  +    G + TGR S      QN+P   +  +      
Sbjct: 562 LYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 616

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                               +SC IA  G   +  D + IE R+LA  + ++  + AF N
Sbjct: 617 --------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKN 656

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T    F     + + E R+I K +   L Y  G K                  
Sbjct: 657 DEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKN------------- 699

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                           K+     +   + +      +   ++ +
Sbjct: 700 -------------------------------LKIEANLAKTYIEKYFENFTSIKSYFEKV 728

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                              I   S R+           Y +   
Sbjct: 729 KNEAKANG--------------------------FISTLSGRKR----------YFDFEN 752

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641
           ++ M+   Y  +   +I+Q  + DI+   M    K       ++L +HDE++ E  D   
Sbjct: 753 AKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEVKDELC 812

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + V     +M         + LK     AK++
Sbjct: 813 ENFVKKTSDIMENIVK--LKVKLKTSSSIAKKW 843


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 102/681 (14%), Positives = 185/681 (27%), Gaps = 159/681 (23%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE---------QSAMPSDLLQYLRDETVMCVAHNSLFERI 78
           A +     A  D                     A  +   + L D  V    H+     +
Sbjct: 348 AKLVGLGVALPDGQTAYVPLRHAQLGVTQVRPEAFTAAFREVLEDAAVKKGGHDLKALSL 407

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALN--FSEHLTKMEEGKALI 132
           +     GI +         +L+          +L +     LN                 
Sbjct: 408 VLAN-DGITLHGAH-DDVELLSYLLNPSRREHALVDLSRERLNTELPPLP---------- 455

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------D 182
                 + +       RA      +          EA R L   L              D
Sbjct: 456 -----PAAEGKRGKKDRALADHTVEEVATGFAIRAEAARRLAPELWKELEAAKLAALARD 510

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  L   +  RG  +D   + +    +    +   +++ +       +      L 
Sbjct: 511 MELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAGREF-NIGSNPQLV 569

Query: 243 MYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    +             + +L   +        I+   + S      L+TL   V
Sbjct: 570 EVLFTELKLPIIKRGKTGPSADQEVLEKLSEEHPLPGAIIEYRSLSKLKSTYLDTLPTLV 629

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           ++DGR+  T     A+ TGR S      QN+P                            
Sbjct: 630 AADGRIHTTYHQA-ATATGRLSSTDPNLQNIP------------------------VRTD 664

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A+ G +LV AD + +E R+LA IA +   I+AF + EDI+  T A+ F  
Sbjct: 665 LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGV 724

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             ++V +EQR +                        GL                      
Sbjct: 725 AKEQVDREQRRVA--------------KMVNFGIAYGLSP-------------------- 750

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                          +  +       + + +  ++ G+ +  ++  +             
Sbjct: 751 ----------HGLGARLGIAQDVARDIIERYFTRYAGIRRYLEETVDRARKTGY------ 794

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                               +     RR   +D+      +  A     R          
Sbjct: 795 --------------------VETLYGRRRYMADLNSKNRGVAQAA---ERAAI------N 825

Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
             +Q  + D++ + M    +          ++L VHDE++ E PD     V  L    M+
Sbjct: 826 MPIQGTAADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAVKAMS 885

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
                   +PLK E    + +
Sbjct: 886 SVAD--LKVPLKVEVGAGRSW 904


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/657 (13%), Positives = 178/657 (27%), Gaps = 151/657 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-- 90
            + A+  E +          +     +       +     ++F+    KK L        
Sbjct: 346 VSIAYGPEQIYSILCDTNMDIEYLFGKLTEIAGSVKTF--AMFD---LKKYLPHVKAPDQ 400

Query: 91  KRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++    +V A            ++     L            KA                
Sbjct: 401 EKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDEKADVMTKAC--------------- 445

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                  +A+  F        +   E    L   +D E  L      +   G +++ + +
Sbjct: 446 ------YEAYTAFAAVKPLRDKMQAEGMYHLF--TDIEMPLVFTLFDMEQAGIQVEAEAL 497

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
               E +     +L+++I ++  G   +      L + LF    +     ++    T   
Sbjct: 498 KFYGEQLGGRIVELEKEIYEMA-GETFNINSPKQLGVVLFDHMQLPNGKKTKTGYSTAAD 556

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          + IL     +       + L+  + +DGR+ G       + TGR S  
Sbjct: 557 VLDKLAPDYPVVEKILEYRQLTKLKSTYADGLAVYIGADGRIHGKFNQT-ITATGRISST 615

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +   G   + AD + 
Sbjct: 616 EPNLQNIP------------------------VRMELGRLIRKVFVPKEGYVFIDADYSQ 651

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA  +G++  I+A+ +  DI+  T ++ F+TP ++V++ QR   K +   + Y  
Sbjct: 652 IELRILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTELQRRNAKAVNFGIVYG- 710

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                 +      L + +        + FE +   +           E      L G   
Sbjct: 711 ----ISSFGLSQDLSITRKEAAQYIENYFETYPGIKRFLDDTVAHAKEEGYVVTLFGRRR 766

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +                                              
Sbjct: 767 PV---------PELKSSNFMQRN------------------------------------- 780

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                      G+   +N                     Q  + DI+   M    +    
Sbjct: 781 ----------FGERVAMNAPI------------------QGSAADIMKIAMIGVNRELKE 812

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++ E        V  +    M +       +PL  + +  + +
Sbjct: 813 KGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAAD--LDVPLIVDMHTGENW 867


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 92/702 (13%), Positives = 192/702 (27%), Gaps = 158/702 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54
             L +D ET SP P            A +   +++  ++          +++        
Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393

Query: 55  SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            ++ ++L       V  V  N  ++ I+ +   G  + + ++  T + +      G   +
Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQF-DTMLASYVIQPEGRRHN 451

Query: 109 LKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +      L N+         G                    +       +   EY   D 
Sbjct: 452 MDVLAKDLLNYDTITYDDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 496

Query: 168 EATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           + T  L++                  E  L  +   +   G  +D+    +L     +E 
Sbjct: 497 DITFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 556

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLA 274
           + L+ +I K   G   +   T  L+  LF    +  V  +     T   +L         
Sbjct: 557 RHLESEIHKQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPI 615

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
            + +L+    +      ++ L + V+   GR+  +     A  TGR S      QN+P  
Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 672

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWI 392
                                         +R      +   +++  D + IE R++A I
Sbjct: 673 ----------------------IRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++A+ +G DI++ T A  +  P  +V+ E R   KV+  ++ Y           
Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YG 765

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +             +   +S+   M +   +      L G    +V      
Sbjct: 766 LSRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIV------ 819

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    K   E    V                                   ++   +
Sbjct: 820 ---DINSTHKSAKEAAKRVAINSPVQGTSADMI---------------------KIAMIN 855

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +  D    +  +                             +         +V  VH   
Sbjct: 856 IHEDIEKKHYRSR---------------------------MLLQVHDE---LVFEVH--- 882

Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         ++   M         LP+  EG     +
Sbjct: 883 -----KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/648 (14%), Positives = 190/648 (29%), Gaps = 145/648 (22%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             + S L ++  +E  + + HN  +++++  +  GI +    +    +++       S  
Sbjct: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSYVLDSGRSSH 503

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +                 K L +   K  + S     +      +     E+   +    
Sbjct: 504 DIA-----------SIAQKWL-SYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVI 549

Query: 171 RELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            +L+  L P    E+           +  +   +   G +ID DL+ ++   I++    L
Sbjct: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAK 275
           +E+I  L+     +      L   LF          ++      T + +   +       
Sbjct: 610 EENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             IL     S       ++L   ++   +   T     ++ TGR +      QN+P    
Sbjct: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---- 724

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   I+   KKL+ AD + IE R+LA IA  
Sbjct: 725 --------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               + F N  DI+    A+ F   I+KVS + R   K +  ++                
Sbjct: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII--------------Y 810

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+   +                               A + ++  +      K +  +  
Sbjct: 811 GISPFRL------------------------------ATQLRIPRSEAADYIKRYFHRFP 840

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           G+ +  +                                           RR+ Y ++  
Sbjct: 841 GIHEYIEKTKNFVRQNGYVETIF--------------------------GRRIHYDEINS 874

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629
             S +                     +Q  + DI    M +  K          ++L +H
Sbjct: 875 PKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925

Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAEGYEAKRYR 674
           DE+V E P+    +    +   M K   P     +PLK     +  ++
Sbjct: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/691 (13%), Positives = 191/691 (27%), Gaps = 151/691 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQY 60
           S +  D ET               ++A I   ++   +              +   +   
Sbjct: 317 SIVAFDTETTGLD----------TKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQ 366

Query: 61  LRDETVMCV------AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112
              + +  +       HN  ++  + K    + +P K +  T +LA         ++   
Sbjct: 367 AAKKGIEKIYQSTVIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVL 425

Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                ++     +    K       +           +     A+     Y        +
Sbjct: 426 AKRIFDYETLHFEDLVKKG------ESFAGVDVEKACKYAAEDAYITLRFYLYFLKNLEK 479

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L   L      E +   +   + + G ++D+  +  L +   Q+ K L E I  L    
Sbjct: 480 SL---LELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLAGEK 536

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      +   LF    +     S+    T + +L++     L    IL     +   
Sbjct: 537 F-NINSPKQVGDILFEKLKLPSGKKSKTGYSTDEKVLNNLIDEHLIIKEILAYRELAKLV 595

Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 L +    D   R+  +    G + TGR S      QN+P   +  +        
Sbjct: 596 GTYCEPLLKLAKKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------ 648

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             ++C +A  G   +  D + IE R+LA  + ++  ++AF+N E
Sbjct: 649 ------------------KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDE 690

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T    F     + +   R+I K +   L Y  G                      
Sbjct: 691 DIHAKTAIMIFG----ESNYHTRSIAKSINFGLIYGMG---------------------- 724

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                 Y   +   K+     +   + +      +   ++ +  
Sbjct: 725 ----------------------YKTLSQNLKIEAKLAKEYIEKYFKNFTSIKTYFEKVKN 762

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            I     R+           Y +   ++
Sbjct: 763 EAKQNG--------------------------FIKTLLGRKR----------YFDFENAK 786

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643
            M+   Y  +   + +Q  + DI+   M    K       ++L +HDE++ E  D     
Sbjct: 787 PMQIAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDELIFEVKDEFCDE 846

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  +M         + LK     AK +
Sbjct: 847 FAKNASDIMENIVK--LKVKLKTSSSIAKNW 875


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/686 (14%), Positives = 181/686 (26%), Gaps = 153/686 (22%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQSAMPSDLLQYLRDETVM 67
           ET    P            A I    +A   +      D  +  A    +  +L D    
Sbjct: 327 ETHGDNP----------HHADIVGLIFAATGQQFFMTLDVLQSDAATP-IRAWLADPERK 375

Query: 68  CVAHNSLFERI----LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSE 120
              H    +            GI+     +    +            +L         S 
Sbjct: 376 KRGH----DLHRTDLALHWH-GIEFAGAEF-DVQLAGYLLDPTDANQTLSGLAAKYGLSS 429

Query: 121 H-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               +   GK               +   +A  ++A         +  E  +    +L  
Sbjct: 430 IRPDEEVFGKGA-KYKVPDVDVLSDHVARKAAVIEALVPV-----QQAELEKTEMHKLF- 482

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +   +  +G  ++++ +  L +    +   L  +I  +      +     
Sbjct: 483 -HELEMPLSRILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIAGVEF-NLNSPK 540

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF   G+ ++  ++    T   +L            IL     +      +  L 
Sbjct: 541 QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL 600

Query: 297 EAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           + +S   G++    +   A  TGR S      QN+P                        
Sbjct: 601 KEISGKTGKVHTYFRQTVA-ATGRLSSQFPNLQNIP------------------------ 635

Query: 356 PLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +    G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T +
Sbjct: 636 IRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTAS 695

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             F    + V    R   K +                    G+     SQN+        
Sbjct: 696 DVFGVAAEDVDSNMRRSAKAVNF--------------GIVYGISDYGLSQNL-------- 733

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                  +           +    QGV +   D+ +        
Sbjct: 734 ----------------------NITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYV 771

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
              +                           RR    ++      L +      R     
Sbjct: 772 KTLLE--------------------------RRRYLPEINASNFNLRSFA---ERTAM-- 800

Query: 595 GKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  +Q  + DI+   M    K          ++L VHDE+V E P     ++  L 
Sbjct: 801 ----NTPIQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELV 856

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + M      A  +PLKAE      +
Sbjct: 857 PATMEAALELA--VPLKAEVSYGSNW 880


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 93/679 (13%), Positives = 179/679 (26%), Gaps = 139/679 (20%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET    P            A I    +A       +     QS   + + ++L D     
Sbjct: 327 ETHGDNP----------HHAEIVGLIFAATGRQFFMTLNVLQSDAATPIREWLADPERKK 376

Query: 69  VAHNSLFERI----LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEH 121
             H    +            GI+     +    +            +L         S  
Sbjct: 377 RGH----DLHRTDLALHWH-GIEFAGAEF-DVQLAGYLLDPTDANQTLSGLAAKYGLSSI 430

Query: 122 LTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  GK               +   +A  ++A         +  E  +    +L   
Sbjct: 431 RPDDEVFGKGA-KYKVPEMDVLSDHVARKAAVIEALVPV-----QQAELEKTEMHKLF-- 482

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E  L  +   +  +G  ++++ +  L +    +   L  +I  +      +      
Sbjct: 483 HELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIAGVEF-NLNSPKQ 541

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   LF   G+ ++  ++    T   +L            IL     +      +  L +
Sbjct: 542 LGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLLK 601

Query: 298 AVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            +S   G++    +   A  TGR S      QN+P                         
Sbjct: 602 EISEKTGKVHTYFRQTVA-ATGRLSSQFPNLQNIP------------------------I 636

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +    G  ++ AD + IE RVLA I+ ++   +AF +  DI+  T + 
Sbjct: 637 RLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASD 696

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F  P + V  + R   K +   + Y               L++ +          F+ +
Sbjct: 697 VFGVPAEAVDSDMRRSAKAVNFGIVYG-----ISDYGLSQNLNITRKEAARFIDQYFDVF 751

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
           +    +   +            L+           R     +     +            
Sbjct: 752 QGVRRYMDDIVKDAKRDGYVKTLLER---------RRYLPEINASNFNQRSFAER----- 797

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                                     + +NT         T   
Sbjct: 798 ------------------------------------------TAMNTPIQG-----TAAD 810

Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
            +   +VQ        +           ++L VHDE+V E P     ++  L  + M   
Sbjct: 811 IIKLAMVQ-------MDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAA 863

Query: 655 PSWAKGLPLKAEGYEAKRY 673
              A  +PLKAE      +
Sbjct: 864 LKLA--VPLKAEVSYGSNW 880


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 206/695 (29%), Gaps = 120/695 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQSAMPS------- 55
              D ET         GV  Y +  VI   +                 +A P        
Sbjct: 139 FAFDTETT--------GVDVYQD--VIVGVSLTLPRAGYHVYIPVAHNNAGPQLRRSYVL 188

Query: 56  -DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKN 111
             L +YL D TV  V HN+ F+  +  +  G+ +       T +  +         +LKN
Sbjct: 189 NGLKRYLTDPTVGKVLHNAKFDIHMLLRH-GMRMRGLA-HDTMIAMKILNENEPSVALKN 246

Query: 112 ACLALNF------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                          H  +   GKA          D P               +  Y  +
Sbjct: 247 LATRYGKFFGFDGESHTFEDLFGKAC-------FADVPLDMALIYAAKDTHLTWELYKWQ 299

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
               T+     L    + E  L  +   +   G+ +D     +  E +  E  ++++ +V
Sbjct: 300 MEHLTKR-EDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLV 358

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      L   L+   G+        T    L          + +L     +
Sbjct: 359 AHFGE--INFNSPAQLAEVLYDRLGLPQGK-ERSTDVKTLKGLKGRHPGIEPLLKYRELT 415

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L   + +DGR+ G+     A+ TGR++      QNLP +            
Sbjct: 416 KLLGTYVEALPHQLKADGRIHGSFNQ-VATVTGRFASREPNLQNLPPRA----------- 463

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                              R  I+A  G  L+  D + IE R+LA ++G+    + +  G
Sbjct: 464 -------------------RRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKG 504

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVME--LALGYQGGAKVFKTMASHCGLDLQQFS 463
           ED+Y T  A+ F  P+ +     +    +    LA+ Y               L +    
Sbjct: 505 EDLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTSM-----FTLSEQLGISVEE 559

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
            +      ++++    +      +   +      L G            +  G  +    
Sbjct: 560 AHRFIEGFYDEYPDVYAFIKDTWEFVKKNEYVATLYGRK---------RRFPGHREQAIV 610

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
             +  A + +  G+          + +            P   +  +  VKG+   +   
Sbjct: 611 YDQLAAKICKALGTERVPLDFWSNKGI------------PKDLKRKFGAVKGEVERVRRM 658

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDT 639
                             +Q  + DI+   + N  +     G+ I  TVHDE +    DT
Sbjct: 659 -------------AVNARIQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLLVRDT 705

Query: 640 -PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                V  L + M +       +P+K +     R+
Sbjct: 706 ITLAEVEELEACMVRAAE--LEVPVKVDTEIMARW 738


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 188/689 (27%), Gaps = 156/689 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA +   A A             +                        + L   L    
Sbjct: 443  MQASLCGIALALAPNDACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAG 502

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLA-LNFSEH 121
            ++ +  N  F   +     GI +         +++            ++     L  +  
Sbjct: 503  ILKIGFNIKF-VAVLLAQHGITL--ANVDDIQLMSYALDAGRGSQKFESLAEHVLAHAVL 559

Query: 122  LTKMEEG--KALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLI 178
                  G  K  +         +  +    A+ + + W++         E    +++ L 
Sbjct: 560  GEGELVGSGKNKLTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLV--AERMTAVYETL- 616

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 ER L  +   +  RG  ID  ++ +L    AQ   +++ ++ +L    I +    
Sbjct: 617  -----ERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPI-NVGSP 670

Query: 239  YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293
              +   LF   G+     ++     T  SIL             IL     S       +
Sbjct: 671  KQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTD 730

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L   V+   +   T     A+ TGR S      QN+P                      
Sbjct: 731  ALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 768

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      +R   IA+ G KLV AD + IE R+LA IA      +AF +G DI+  T 
Sbjct: 769  --VRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTA 826

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            ++ F  PI  +  E R   K +                    G+                
Sbjct: 827  SEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS--------------- 857

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                               A +  +         K +  +  G+     +  E       
Sbjct: 858  ---------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREFCRKHGY 902

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                            R+  Y ++K   + +        R    
Sbjct: 903  VTTLF--------------------------GRKCHYPEIKASNASVRAF---NERAAIN 933

Query: 594  GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP-YFSVGT 646
                     Q  + DI+   M          K    ++L VHDE++ E PD     ++  
Sbjct: 934  ARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPV 987

Query: 647  LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
            +  +M     P+    +PL  +   A  +
Sbjct: 988  VQHVMQDAPFPAVLLSVPLHVDARAADNW 1016


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 106/687 (15%), Positives = 189/687 (27%), Gaps = 146/687 (21%)

Query: 12  SPQPLPKVGVWAYA-----EQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDET 65
           S     + G++  A      QA +   A A  D    +      Q    ++L ++L D  
Sbjct: 321 SALQGTEHGLYVEAIGENPHQAEVLGLAAAVGD-TAYVVPVAALQQPFTAELRKWLEDAD 379

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLARTNGLP---SSLKNACLALNF 118
                    F+    +  LG       W        + A          +L   C     
Sbjct: 380 KPKNG----FDTHKIELALGW--RGIEWHGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQ 433

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           S      E      A+F     ++     +                 +     EL+  L 
Sbjct: 434 SSVPH-DEAVYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELYFEL- 491

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E+ L ++   +  +G +++   + +L   +  +      +I +L +    +    
Sbjct: 492 -----EQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEMEF-NIGSP 545

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF   G+ +   ++    T   +L           LIL+    S      +  L
Sbjct: 546 KQLGEVLFEKLGLPVQKKTKTGYSTDAEVLEKLAPYHEIVPLILHYRTLSKLQSTYIEGL 605

Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            + V    G++    +   A  TGR S      QN+P                       
Sbjct: 606 LKEVRPETGKIHTYYRQTIA-ATGRLSSQFPNLQNIP----------------------- 641

Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +    G  ++ AD + IE RVLA I+G++   +AF +  DI+  T 
Sbjct: 642 -IRLEEGRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTA 700

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
              F    D+V    R   K +   + Y               L+               
Sbjct: 701 MDVFGVSADQVDSNMRRSAKAVNFGIVYG-----ISDFGLSQNLN--------------- 740

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                   +         + +    QGV +   D+         
Sbjct: 741 ------------------------ITRKEAAKFIEQYFEVFQGVRKYMDDIVMQARR--- 773

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                  D  +     RR    D+K     L +      R    
Sbjct: 774 -----------------------DGFVTTLLERRRYLPDIKASNFNLRSFA---ERTAM- 806

Query: 594 GGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP-DTPYFSVGT 646
                   +Q  + DI+   M    +          ++L VHDE+V E P +        
Sbjct: 807 -----NTPIQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKEL 861

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + S M    +    +PLKA+      +
Sbjct: 862 VPSTMAGALT--LDVPLKADVNYGVNW 886


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/597 (14%), Positives = 161/597 (26%), Gaps = 129/597 (21%)

Query: 92  RWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 V               +     L  +        GK       +    +   D 
Sbjct: 112 PLFDAGVAGYLLNPLKDTYDYDDLARDYLGLTVPSRAGLIGK-------QSVKMALETDE 164

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLV 206
            +A     +  +  +   D          +    +D E  L      +   G + +   +
Sbjct: 165 KKAFTCVCYMGYIAFMSADRLTEELKRTEMYSLFTDIEMPLIYSLFHMEQVGIKAERVRL 224

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKS 263
            +  + +  +   L++ I + T G   +      L   LF    +     ++    T   
Sbjct: 225 KEYGDRLKVQIAVLEQKIYEET-GETFNINSPKQLGEVLFDHMKLPNGKKTKSGYSTAAD 283

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L           +IL+    +         L+  +  D R+ GT      + TGR S  
Sbjct: 284 VLDKLAPDYPVVQMILDYRQLTKLNSTYAEGLAVYIGPDERIHGTFNQT-ITATGRISST 342

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +  +G   + AD + 
Sbjct: 343 EPNLQNIP------------------------VRMELGREIRKIFVPEDGYVFIDADYSQ 378

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++G++  I A+ + EDI+  T ++ F+TP+D+V+  QR   K +   + Y  
Sbjct: 379 IELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVYG- 437

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                 +     GL + +          FE +   +     +     E      + G   
Sbjct: 438 ----ISSFGLSEGLSISRKEATEYINKYFETYPGVKEFLDRLVADAKETGYAVSMFGRRR 493

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +                                              
Sbjct: 494 PV---------PELKSANFMQRS------------------------------------- 507

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                      G+   +N+                    Q  + DI+   M    +    
Sbjct: 508 ----------FGERVAMNSPI------------------QGTAADIMKIAMIRVDRALKA 539

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL VHDE++ ET      +V   L   M         + L+ E      +
Sbjct: 540 KGLKSRIVLQVHDELLIETRKDEVEAVKALLVDEMKHAAD--LSVSLEVEANVGDSW 594


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 99/724 (13%), Positives = 192/724 (26%), Gaps = 171/724 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAM------ 53
           ++ ID ET    P+    V            A A  D  V             +      
Sbjct: 363 EIGIDTETDGLDPMQCNIVG--------LCLAAAAKDGSVPKGYYIPLGHTDDIGFPYPA 414

Query: 54  -----------PSDLLQYLRD---------------ETVMC---VAHNSLFERILFKKTL 84
                          + +  D                       V HN+ F+  +  +T 
Sbjct: 415 GKGGNFDFNATKKWFIDFWNDSCTLPGDISDSGSKQPDSAKRSLVFHNAKFDLHVLARTF 474

Query: 85  GID---IPSKRWICTSVLARTNGLP---SSLKN-ACLALNFSEHLTKMEEG--KALIARF 135
           G+    I S   I T + A           L N     L       +   G  K  I   
Sbjct: 475 GLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQVMQLLQHEMIPIENLIGRGKKQITFN 534

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                D+  Y    A +         +     +  +  +++       E  L  +   + 
Sbjct: 535 RTPIKDATEYGAEDAVY-----TLRLWAPLRAKLQKYDYEKYF--FSQEMPLLKVLYQME 587

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  +D  ++ KLQ  +    +KL+++I  +      +      L   LF   G+  + 
Sbjct: 588 GVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAGCEF-NIGSPKQLGEVLFDTLGLPEIK 646

Query: 256 MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQF 311
               T  ++L   +      +   +I  R          ++ L   V+ D  R+  +   
Sbjct: 647 KR-STDAAVLEELSFRSAHPIVFAVIEYR-ELKKMQSTYVSVLPTLVNPDTKRIHTSFIQ 704

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
           +G + TGR S      QN+P                                +R+  +  
Sbjct: 705 WG-TATGRLSSRDPNLQNIP------------------------VRSDLGKQIRAAFVPQ 739

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                ++  D + IE R+LA ++G++  I+++  G DI+  T A      ++ V+ + R 
Sbjct: 740 NPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRR 799

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             KV+   + Y               L +            FE ++  +      +    
Sbjct: 800 DAKVVNFGVLYGMT-----AFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAH 854

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                + L G    +          G+    +  ++    +        +          
Sbjct: 855 RDGYVETLSGRRRYIA---------GIDSSDRMESQMAERMAVNTPVQGSAADLI----- 900

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                           ++    ++   +  N                             
Sbjct: 901 ----------------KIAMIRIQKRINDENLPLR------------------------- 919

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYE 669
              M              HDE+V E P     ++  +    M         +PL A    
Sbjct: 920 --MMLQV-----------HDELVFECPKDQVEALSAMVKSEMEGAME--LKVPLVASVGF 964

Query: 670 AKRY 673
            K +
Sbjct: 965 GKNW 968


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 90/596 (15%), Positives = 165/596 (27%), Gaps = 127/596 (21%)

Query: 92  RWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                S+               +     L+ S        GK+ + R  + + +      
Sbjct: 364 PVFDASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIGKSSMKRAMEENKE----KA 419

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                  ++  F           +    +L    + E  L      + D G R++  L+ 
Sbjct: 420 VSCICYMSYVAFRSRDLLQEALEKAGMDKLF--YEIEMPLTYSLYRMEDAGIRVERKLLK 477

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +  + +     +L++ I + T G   +      L   LF    I     ++    T   +
Sbjct: 478 EYGDRLKVRIAELEQKIYEET-GETFNINSPKQLGEVLFDHMKIPGGKKTKTGYSTAADV 536

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L        A  LIL+    +       + L+  +  D R+ GT      + TGR S   
Sbjct: 537 LEKLASDWPAVRLILDYRQLTKLNSTYADGLAAYIGPDERIHGTFNQT-ITATGRISSTE 595

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   +   G   + AD + I
Sbjct: 596 PNLQNIP------------------------VRMELGREIRKVFVPQEGCVFIDADYSQI 631

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA ++G+   I A+   EDI+  T ++ F+ P+ +V+  QR   K +   + Y   
Sbjct: 632 ELRVLAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNFGIVYG-- 689

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +     GL + +   +      FE +   ++    +  +  E      + G    
Sbjct: 690 ---ISSFGLSEGLSITRKEASEYIEKYFETYPGVKTFLDGLVAEAKELGYAASMFGRRRP 746

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
           +           +                                               
Sbjct: 747 V---------PELKSSNFMQRS-------------------------------------- 759

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
                     G+   +N+                    Q  + DI+   M          
Sbjct: 760 ---------FGERVAMNSPI------------------QGTAADIIKIAMIRVDGALRKQ 792

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                IVL VHDE++ E        V   L   M      A  + L+ E      +
Sbjct: 793 GLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAADLA--VSLEVEANAGDSW 846


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 110/665 (16%), Positives = 193/665 (29%), Gaps = 131/665 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82
             A +   A+A+    V +   T     + +   +  +        + H++     +   
Sbjct: 398 RHADLGGLAFAFTPLDVWVVQPTIELSSAKIFEAVKPWFE-SNAPKLFHDAKAAIHVLAA 456

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGS 139
              I +   +     ++        S          L           GK        G 
Sbjct: 457 QH-IAVNG-QIDDAMLMDYVLEAHLSHDLVRISARELRRRIPTRDEVSGKGAKR---VGW 511

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            ++PP D  R     A  L                K L    D ER L  +   +   G 
Sbjct: 512 RETPPEDAARFLAESAAALRAAGSVLKARL-LADEKLLRVYEDIERPLVGVLARMESAGI 570

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-- 257
            +D  L+ +  + +  E ++L E+          +      L   LF   G+ +V  +  
Sbjct: 571 TVDASLLAQESKELGVEVEQLVEEAHAAAGHPF-NLSSPKQLAQILFAEQGLPVVKKTAS 629

Query: 258 --EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T + +LS   +      +IL     +      L+ L   +  DGR+  T     A 
Sbjct: 630 GTPSTDEEVLSELALNYPLPKIILEHRRLTKLKSTYLDKLPTLIDRDGRIHTTFGQAVA- 688

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                                +R+   A  G  
Sbjct: 689 VTGRLSSMDPNLQNIP------------------------TRTPEGRRIRTAFTARRGWS 724

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + +E R++A ++ +   + AF+ GEDI+ +T A+ F+TP+D+V+ +QR + KV+
Sbjct: 725 VIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRMAKVI 784

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+                                   A +
Sbjct: 785 N--------------FGLIYGMS------------------------------AFGLAQQ 800

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L           +  K  GV +  +      A       +                  
Sbjct: 801 MGLDRQVAAAYVDEYFHKFPGVKRYMEKTRAQAAEDGYVETAF----------------- 843

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RRL   D+      +  A  +               +Q  + DI+   M 
Sbjct: 844 ---------GRRLWVPDITAPRPMVRAAAERAAINA---------PMQGTAADIIKRAMI 885

Query: 616 NAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGY 668
                    K    ++L VHDE++ E P      V   L  LM         +PL A+  
Sbjct: 886 AVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMAGAAK--LSVPLIADVG 943

Query: 669 EAKRY 673
               +
Sbjct: 944 VGASW 948


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/697 (15%), Positives = 186/697 (26%), Gaps = 155/697 (22%)

Query: 8   IETRSPQP---------LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPS 55
           +ET                K+G++   +   +   A A  D+ V +           +  
Sbjct: 302 LETTEQIDGFFADKMKNTHKIGLYPIRKDGTLFGLAAAISDKDVFILSNLNGMEHDRLTE 361

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGLP---SSL 109
           +++   RD            + +  K+       D    +     V A          S 
Sbjct: 362 NIVSVTRDG--------MQIDILDLKEALSVFPFDESDTKVHDIGVAAYLLNPMEDVYSY 413

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  L  +    K   GK  +  F   +         +A           Y   D+ 
Sbjct: 414 DAIARDYLGATLPSEKELVGKDELNLFSFTNETFRKLFAYKA--------LIPYLAGDLL 465

Query: 169 AT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               E  +     ++ E         +  RG R+D   +      +     +L  +I+  
Sbjct: 466 MERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKLQSRIDELHTEIIGY 525

Query: 228 TDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+           T   +L            IL     
Sbjct: 526 AGKEF-NINSPKQLGVILFEDMGLSGGKKTKTGYSTSVDVLEKIKNDHPIIPAILEYRQL 584

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +         L+  +S DGR+ GT      + TGR S      QN+P             
Sbjct: 585 TKLNSTYAQGLTAYISEDGRIHGTFNQT-ITATGRISSTDPNLQNIP------------- 630

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   I  +G   V AD + IE RVLA ++ +     AF N
Sbjct: 631 -----------MKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLN 679

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             DI+ TT ++ F+ PID+V+  QR   K +   + Y               L + +   
Sbjct: 680 HVDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVYG-----ISAFGLSEDLGISRKEA 734

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                  F  ++  +S      ++     V   + G    +           +       
Sbjct: 735 ADYIEKYFATYKNIKSFLDRQVEEAKADGVVRTMFGRIRPV---------PELRSSNFMT 785

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                             G+   +N+  
Sbjct: 786 RS-----------------------------------------------FGERVAMNSPI 798

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDEIVSETPD 638
                             Q  + DI+   M        K G    ++L +HDE++ ET  
Sbjct: 799 ------------------QGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVETAK 840

Query: 639 TPYFSVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673
                V     +M K    A    +PL+    E   +
Sbjct: 841 DEVDIVK---EIMEKEMMGAADMAVPLEIGISEGDNW 874


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 181/630 (28%), Gaps = 141/630 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L   + ++ V  V H+         K   I +    +  T++ A       S      
Sbjct: 453 ELLKNVMENDKVKKVIHDGKNLVTFLNKN-NITVKEFDF-DTAIAAYLLDSAQS------ 504

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             N +E + K    K +     +       Y                Y        +E  
Sbjct: 505 KYNLTELIEKYLN-KEIDGIESENEGILGSYIP------------KLYMILKSNIEKEKM 551

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            +L    + E  L  +  ++   G+ I+  ++ +L+     E ++  ++I +L D    +
Sbjct: 552 DKLY--YEVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELADEEF-N 608

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L   LF    + ++  ++    T + +L            I+     +  +   
Sbjct: 609 VSSPKQLGKILFEKLDLPIIKKTKTGYSTNQEVLEKLLDKHEIIPKIMYYRQITKISSTY 668

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +  L   +  DGR+         + TGR S      QN+P                    
Sbjct: 669 VEGLKNVIDEDGRIHSNFNQTV-TTTGRLSSTDPNLQNIP-------------------- 707

Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   I    G  LV  D + IE RVLA IAG++  I AF +  DI+ 
Sbjct: 708 ----IRHELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHT 763

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T ++ F  P++ V+   R+  K +   + Y          +    L + +         
Sbjct: 764 KTASEVFKVPVEDVTSLMRSRAKAVNFGIVYG-----ISAFSLSQDLKIPKAEAQEYMNI 818

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            FE + + +S+   +  +  E      ++           R     +    K +      
Sbjct: 819 YFERYPKIKSYLENIVSEAEEKGYVLTILNR---------RRFIPEINASNKIV------ 863

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                                       G+   +N         
Sbjct: 864 -----------------------------------------KALGERLAMNAPI------ 876

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644
                       Q  + DI+   M N        K    ++L VHDE++    +  +  V
Sbjct: 877 ------------QGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELILNVKENEFEEV 924

Query: 645 GTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +    M      + G  L  +    K +
Sbjct: 925 KKIVVDEMENAIKLSVG--LDVDINSGKTW 952


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 204/662 (30%), Gaps = 139/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86
           I   A A  +E    + RT+ +   S    +L DE+       S+F+    I+  K  G+
Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKK----SVFDGKRAIVSLKWQGV 387

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSIDS 142
            +   ++    + +       S ++        +       +   GK    +        
Sbjct: 388 HLRGIQF-DLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAVYGKGAKQK-------- 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          ++      +  ++    +D E  L  +   +   G ++D
Sbjct: 439 VPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           ++ + ++ E +A++ K+++++I +L      +      L + LF    + ++  ++    
Sbjct: 499 VERLKEMGEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D     T+     ++TGR
Sbjct: 558 TSAEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGR 617

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   I       +  
Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFIPSEPDWVIFS 653

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA ++  I AF +G DI+  T    F+   ++V+   R   K +   
Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFG 713

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 714 IV--------------YGISDYGLSQN------------------------------LNI 729

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    K +     GV Q  KD+ +          +    R   +P +  R      
Sbjct: 730 TRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL-- 785

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                            + + +NT                   +Q  + DI+ + M +  
Sbjct: 786 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLS 814

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                      ++L VHDE++ E P      +  +   +M         +PLK + +   
Sbjct: 815 KRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGP 872

Query: 672 RY 673
            +
Sbjct: 873 TW 874


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/665 (13%), Positives = 174/665 (26%), Gaps = 140/665 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR---DETVMCVAHNSLFERILFKKT 83
           +T  A    +E +      E      +   +          +      N      +    
Sbjct: 371 VTGLALCLGEEDIYCMAAGEKLSGEFLIRQVKALCALKPGSSHEVWVLNLK---EMLPYL 427

Query: 84  LGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGS 139
              D          V               +     L  +         KA +      +
Sbjct: 428 ETGDTAP--VYDGGVAGYLLNPLKDTYGYDDLARDYLGLTVPSRADLLAKADLG-DALWN 484

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRG 198
            D+    C        W+      ++  +     L+K      + E  L      +   G
Sbjct: 485 EDARAVTCACYMAYTVWKAAAPLTRQLKDTGMYALYK------EIEMPLIYSLYHMEQEG 538

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            +++   + +    +      L+++I + T     +      L   LF    +     ++
Sbjct: 539 VKVERAELEEYGNRLKVRIVDLEQEIYRDTGKEF-NINSPKQLGEILFEDMKMPGGKKTK 597

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    +         L+  +  DGR+ G       +
Sbjct: 598 TGYSTAADVLDKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRIHGKFNQT-IT 656

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                                +R   +   G  
Sbjct: 657 ATGRISSTEPNLQNIP------------------------VRMELGREIRKVFVPKEGCV 692

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            V AD + IE R+LA ++G++  I+A+ + +DI+  T ++ F+ P+ +V+  QR   K +
Sbjct: 693 FVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAV 752

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L + +          FE +   +     +  Q  E    
Sbjct: 753 NFGIVYG-----ISAFGLSEDLSISRKEAVEYINKYFETYPGVKIFLDGLVSQGKEQGYV 807

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L G    +           +        +                             
Sbjct: 808 TTLYGRRRPI---------PELKSANFMQRQ----------------------------- 829

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                              G+   +N+                    Q  + DI+   M 
Sbjct: 830 ------------------FGERVAMNSPI------------------QGSAADIMKIAMI 853

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
              +          IVL +HDE++ ET +    +V  +    M         + L+ E  
Sbjct: 854 AVDRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAAE--LKVSLEVEAE 911

Query: 669 EAKRY 673
             + +
Sbjct: 912 VGRSW 916


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/665 (14%), Positives = 191/665 (28%), Gaps = 141/665 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           A I   + A D         T   +       +  DET         ++     +  +  
Sbjct: 331 ADIIGFSVANDKGNFFFSKETALKS--DVFKTWAEDETKKKTV----YDAKRSEVSLRHH 384

Query: 85  GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEH-LTKMEEGKALIARFCKGSI 140
           G+ +    +    + +           + +      ++     +   GK    R  +   
Sbjct: 385 GVHLKGADF-DLYIASYLINPSQTIEDMASIAKNHGYNAIQSDEAFYGKGAKRRIPEEKE 443

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            +       A       L     K D E        L    D E  L L+   +   G +
Sbjct: 444 LAGHLARKAA------ALMTLKEKLDSELKENQQSELF--YDLEMPLSLILADMESTGIK 495

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +DL+ +  + + +  +  ++++ I +L  G   +      L + LF   G+  +  ++  
Sbjct: 496 VDLERLKTMGQDLLSKLDEIEKRIHELA-GEAFNINSPKQLGVILFEKLGLPAIKKTKTG 554

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
             T   +L     +      IL+           +  L + V+   G++         ++
Sbjct: 555 YSTSADVLEKLENSHEIIRDILHYRQLGKLQSTYIEGLLKVVNYETGKVHTRFNQA-LTQ 613

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   +    G  
Sbjct: 614 TGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWA 649

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  AD + IE RVLA IA ++  I+AF    DI+  T  + F+   ++V+   R   K +
Sbjct: 650 IFAADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAV 709

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+     SQ++                             
Sbjct: 710 NF--------------GIVYGISDYGLSQSL----------------------------- 726

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +           +   + GV Q   D+            S    R   +P +  R   
Sbjct: 727 -GITRKEAGKFIDRYLESYPGVKQYMDDIIHDAKQKGYV--STLLHRRRYLPEITSRNFN 783

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                               + + +NT                   +Q  + DI+ + M 
Sbjct: 784 L---------------RSFAERTAMNT------------------PIQGSAADIIKKAMI 810

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
           +        +    ++L VHDE++ E P+    ++  +   +M         +PLK +  
Sbjct: 811 DMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIVPDVMENAVE--LKVPLKVDYS 868

Query: 669 EAKRY 673
               +
Sbjct: 869 FGPTW 873


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/673 (15%), Positives = 188/673 (27%), Gaps = 154/673 (22%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
             + +   A+  +   +   D     A       +L D+ V  V  ++     +    LG
Sbjct: 360 HDSEVVAVAW-TNGSEIFTGDARLLQADL--FKAWLSDDQVTKVVFDAK-RTKVMLDYLG 415

Query: 86  IDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSID 141
           ID          + +         + L       +  +        GK            
Sbjct: 416 IDFAGV-VDDVLIGSYLLHARDNSNDLAEVAREFDMDDLSYDEAIYGKGAKRG------- 467

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLD 191
                       +  +   E+  R V     L + + P  +           E  L L+ 
Sbjct: 468 ----------VPEEAETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKIELPLALVL 517

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G  +D   ++ +Q    +    L+ DI K       +      L + LF   G+
Sbjct: 518 ANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGHEF-NVNSPKQLGVILFEEMGL 576

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
            ++  ++    T + +L          DLILN    +      +  L E +  DG++   
Sbjct: 577 PVIKKTKTGYSTAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFIHEDGKIHSR 636

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            Q    + TGR S      QN+P                                +R   
Sbjct: 637 FQQT-LTSTGRLSSADPNLQNIP------------------------IRSEEGRSIRKAF 671

Query: 369 IA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           +       +  +D + IE RVLA I+G+    +AF N EDI+ +T  K +N P ++V+  
Sbjct: 672 VPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSN 731

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y               L                              
Sbjct: 732 MRRNAKAVNFGIVY-----GISDYGLSQNL------------------------------ 756

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                     +     +     +   + GV    KD+ E            +        
Sbjct: 757 ---------NISRPEAKNFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFN-------- 799

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR    D+K     + +   +               +Q  + 
Sbjct: 800 ------------------RRRYLPDLKAKNFNVRSFAERN---------AMNTPIQGTAA 832

Query: 608 DILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKG 660
           DI+   M          K   +++L +HDE+V E P     ++  L   +M         
Sbjct: 833 DIIKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIETLEKLVTEIMGSAAQ--LD 890

Query: 661 LPLKAEGYEAKRY 673
           +PL+ E      +
Sbjct: 891 VPLEIESNYGATW 903


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/674 (13%), Positives = 176/674 (26%), Gaps = 143/674 (21%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERI- 78
           V      + I      +D             ++ ++ + Q+L D           F++  
Sbjct: 329 VGENPHHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHR 383

Query: 79  ---LFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLT-KMEEGKAL 131
                    GI +    +    + +       S   L       + +     +   GK  
Sbjct: 384 AQLALSW-KGIKLRGVSF-DVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGA 441

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
             +  +  +             +   +     +                 + E  L  + 
Sbjct: 442 KFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQEL--------YYELEHPLAGVL 493

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G ++D + + +L   I+ + K + + I +       +      L   LF    +
Sbjct: 494 AEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTF-NINSPKQLGEVLFEKLQL 552

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
            +   ++    T   +L            IL+    +      +  L + V  D G++  
Sbjct: 553 PVQKKTKTGYSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHT 612

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +   A  TGR S      QN+P                                +R  
Sbjct: 613 YYRQTIA-ATGRLSSQYPNLQNIP------------------------IRLEEGRKIRKV 647

Query: 368 IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            +    G  ++ AD + IE RVLA I+G++   +AF    DI+  T    F     +V  
Sbjct: 648 FVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDA 707

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L                             
Sbjct: 708 NMRRSAKAVNFGIVY-----GISDYGLSQNL----------------------------- 733

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      +         + + +  +GV      +             +        
Sbjct: 734 ----------GITRKEASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQ------- 776

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RR    ++           S   R            +Q  +
Sbjct: 777 -------------------RRRYLPEINASN---YNLRSFAERTAM------NTPIQGTA 808

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
            DI+   M    +          ++L VHDE++ E P+    ++  L   +M +    A 
Sbjct: 809 ADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LAL 866

Query: 660 GLPLKAEGYEAKRY 673
            +PLK E  E + +
Sbjct: 867 DVPLKVEVDEGENW 880


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 204/662 (30%), Gaps = 139/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86
           I   A A  +E    + RT+ +   S    +L DE+       S+F+    I+  K  G+
Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKK----SVFDGKRAIVSLKWQGV 387

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSIDS 142
            +   ++    + +       S ++        +       +   GK    +        
Sbjct: 388 HLRGIQF-DLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAVYGKGAKQK-------- 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          ++      +  ++    +D E  L  +   +   G ++D
Sbjct: 439 VPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           ++ + ++ E +A++ K+++++I +L      +      L + LF    + ++  ++    
Sbjct: 499 VERLKEMGEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D     T+     ++TGR
Sbjct: 558 TSAEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGR 617

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   I       +  
Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFIPSEPDWVIFS 653

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA ++  I AF +G DI+  T    F+   ++V+   R   K +   
Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFG 713

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 714 IV--------------YGISDYGLSQN------------------------------LNI 729

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    K +     GV Q  KD+ +          +    R   +P +  R      
Sbjct: 730 TRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL-- 785

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                            + + +NT                   +Q  + DI+ + M +  
Sbjct: 786 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLS 814

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                      ++L VHDE++ E P      +  +   +M         +PLK + +   
Sbjct: 815 KRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGP 872

Query: 672 RY 673
            +
Sbjct: 873 TW 874


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/676 (13%), Positives = 179/676 (26%), Gaps = 146/676 (21%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
           GV+ Y  +      +  ++++ V          +  +   +   +          N+  E
Sbjct: 322 GVFIYRNKDNF-GVSLCFNNDNVYYIGKEGFVTEDYIIEKVRDLV----------NAKAE 370

Query: 77  RILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEG 128
             +       DI     ++     S+ A             +     L  +         
Sbjct: 371 LTILNIKENNDILENDDAESIFDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFDEIFP 430

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDL 187
           K          I          N       +  Y  +D      +  + L   ++ E  L
Sbjct: 431 KTKKNETPSDEIPENILKYACYNA------YVAYKAKDALTEKLKETEMLDIYNNVEIPL 484

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                 +   G  +  D + +  E +      L++DI         +      L   LF 
Sbjct: 485 TYALYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGHEF-NINSPKQLGEILFG 543

Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
              +     ++    T  S+L            IL     +       + L+  +  D R
Sbjct: 544 EMQLPGGKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQLAKLKSTYADGLAVYIGEDNR 603

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           + G       + TGR S      QN+P                                +
Sbjct: 604 IHGKFNQT-ITATGRISSTEPNLQNIP------------------------VRMPLGREI 638

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   I   G   + AD + IE R+LA ++ +   I A+ + +DI+  T +  F+ P+++V
Sbjct: 639 RKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEV 698

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KEQR+  K +   + Y   +                                       
Sbjct: 699 TKEQRSNAKAVNFGIVYGISSFGLSN---------------------------------- 724

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                        +     E   K +   + G+     +  +              RR  
Sbjct: 725 ----------DLSISRKEAEQYIKDYFISYPGIKNYLDNSVKEAKEKGYSVTMFGRRRPI 774

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                            L S   +      G+   +                   + +Q 
Sbjct: 775 P---------------ELTSGNFM--QRQFGERVAM------------------NSPIQG 799

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657
            + DI+   M N  K          IVL VHDE++ E  +     V  +    M +    
Sbjct: 800 SAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAAH- 858

Query: 658 AKGLPLKAEGYEAKRY 673
              +PL  +      +
Sbjct: 859 -LNVPLDVDVQVGNNW 873


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/674 (13%), Positives = 176/674 (26%), Gaps = 143/674 (21%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERI- 78
           V      + I      +D             ++ ++ + Q+L D           F++  
Sbjct: 353 VGENPHHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHR 407

Query: 79  ---LFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLT-KMEEGKAL 131
                    GI +    +    + +       S   L       + +     +   GK  
Sbjct: 408 AQLALSW-KGIKLRGVSF-DVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGA 465

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
             +  +  +             +   +     +                 + E  L  + 
Sbjct: 466 KFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQEL--------YYELEHPLAGVL 517

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G ++D + + +L   I+ + K + + I +       +      L   LF    +
Sbjct: 518 AEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTF-NINSPKQLGEVLFEKLQL 576

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307
            +   ++    T   +L            IL+    +      +  L + V  D G++  
Sbjct: 577 PVQKKTKTGYSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHT 636

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +   A  TGR S      QN+P                                +R  
Sbjct: 637 YYRQTIA-ATGRLSSQYPNLQNIP------------------------IRLEEGRKIRKV 671

Query: 368 IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            +    G  ++ AD + IE RVLA I+G++   +AF    DI+  T    F     +V  
Sbjct: 672 FVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDA 731

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L                             
Sbjct: 732 NMRRSAKAVNFGIVY-----GISDYGLSQNL----------------------------- 757

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      +         + + +  +GV      +             +        
Sbjct: 758 ----------GITRKEASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQ------- 800

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RR    ++           S   R            +Q  +
Sbjct: 801 -------------------RRRYLPEINASN---YNLRSFAERTAM------NTPIQGTA 832

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
            DI+   M    +          ++L VHDE++ E P+    ++  L   +M +    A 
Sbjct: 833 ADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LAL 890

Query: 660 GLPLKAEGYEAKRY 673
            +PLK E  E + +
Sbjct: 891 DVPLKVEVDEGENW 904


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 96/660 (14%), Positives = 196/660 (29%), Gaps = 127/660 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
            QA I   A A  +E    +  TE++        + R +       ++    +      G
Sbjct: 329 HQAEIAGMAVA--NEKGCFYFPTEKAVKSDAFRAFARSQEKKKWLFDAKRAVVALAWH-G 385

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +D+    +    + +       S        + +         +       KG+  S P 
Sbjct: 386 VDLNGVDF-DLQMASYLLDPSLSSHEIS---DIATRKGTGGVAEDEAVY-GKGAKRSLPE 440

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           +   A H+          K  +E      ++L  L   E  L ++   +   G R+D + 
Sbjct: 441 EAALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQ 500

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + ++ + ++     L++ I K       +      L + LF   G+  V  ++    T  
Sbjct: 501 LEEMGKDLSDRLNTLEKAIHKEAGEPF-NINSPKQLGVILFEKLGLPPVKKTKTGYSTSA 559

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321
            +L     T    + +L            +  L + +    G++         ++TGR S
Sbjct: 560 DVLEKLAGTHPIIEHLLLYRQLGKLYSTYIEGLLKVIDSETGKVHTRFNQA-LTQTGRLS 618

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380
                 QN+P                                +R   +A   G K+V AD
Sbjct: 619 STDPNLQNIP------------------------IRLEEGRKIRKAFVASKEGWKIVAAD 654

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA I+G++   +AF  G DI+  T    F+   ++V+   R   K +   + 
Sbjct: 655 YSQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIV 714

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     SQ+                                +  
Sbjct: 715 --------------YGISDYGLSQS------------------------------LGITR 730

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +     + A +  V    +++ +           ++ RR     +            
Sbjct: 731 KEAKDFIDRYLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQ------ 784

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                          + + +NT                   +Q  + DI+   M   ++ 
Sbjct: 785 -----------RSFAERTAMNT------------------PIQGTAADIIKRAMVKMSEA 815

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +++L VHDE++ E        +  L   +M +       +PL+ +      +
Sbjct: 816 LEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTEVMEQALE--LDVPLQVDVSSGNSW 873


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 192/710 (27%), Gaps = 167/710 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-------AMPSD 56
              D E          G+  +A Q  +   + A              S        + + 
Sbjct: 365 FAFDTE--------ASGLRPFASQ--LCGISLALSPGSAVYVPCGHSSGAQLSLAEVVAA 414

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115
           L  +  D      AHN+ F+  +    +GI++    +  T + A   G  + LK+     
Sbjct: 415 LGPFFADPNKAKYAHNAKFDIEMLLG-VGIEVQGLAF-DTMIAAALLGKRAGLKDLAFYE 472

Query: 116 --LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       +   G+                    +      +    Y   D + T  L
Sbjct: 473 LQLPDPMTPIEDLIGRGTKQ---------------ISFAQVPIERATPYAAADADMTLRL 517

Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              L P               E  L  +   +   G  +D   +  L + +      +++
Sbjct: 518 VHALEPQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRMGTRIAAIEQ 577

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMSEGTLKSILSHSNITQL-- 273
           +I ++ +G   +   +  L   LF   G+                    L          
Sbjct: 578 EIYQIAEGPF-NINSSDQLSDILFGKIGLSTEGVERTAKTKKYSITADTLERLRERDTSG 636

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + IL     S      ++ L   V+   GR+  T    GA  TGR S      QN+P 
Sbjct: 637 ICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYNQVGA-ATGRLSSNDPNLQNIP- 694

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +A+ G + + AD + IE RVLA+I
Sbjct: 695 -----------------------VRTQEGREIRRGFVAAPGHRFIAADYSQIELRVLAYI 731

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
             +   ++AF  G+DI+  T A+ F   ID+V KEQR I K +   + Y           
Sbjct: 732 TKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYG-----ISAFG 786

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                ++ +        S F  +     +     +Q     V   + G            
Sbjct: 787 LAQRTEMGRSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQ---------R 837

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +              +      +A  +  +  + M                     
Sbjct: 838 AMPELQSRGPRRAAAEREAINAPIQGTAADIMKIAMIKMA-------------------- 877

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                      + + +R R                      +         ++L      
Sbjct: 878 --------RALSERGLRTRL---------------------LLQVHDE---LIL------ 899

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWA----KG----LPLKAEGYEAKRY 673
             E P+     V  L   +M    S A    +G    +PL  +      +
Sbjct: 900 --EAPEEEVALVAELVREVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNW 947


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 89/696 (12%), Positives = 193/696 (27%), Gaps = 156/696 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54
           S + ID ET S              ++ I   + ++ +          +         + 
Sbjct: 354 SYIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKEYII 403

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
               +   +     +  N  F+  + K+  G ++    +  T + A         SL   
Sbjct: 404 QKFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFL 460

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +                   P   T  +     ++   Y   D + T 
Sbjct: 461 AAKYLMHKNIKYEEIV----------------PQHSTLKD--IPLEIASNYAAEDADITF 502

Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            LF  L                E     +   + + G  +D + + +    + QE K ++
Sbjct: 503 RLFNILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIE 562

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLIL 279
            ++++       +   +  L   LF    I +      + T   +L        + + ++
Sbjct: 563 NEVIQSIGIEF-NLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLI 621

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           N    +       + L E ++    ++         + TGR S      QN+P       
Sbjct: 622 NYRQLAKLKNTYTDNLIEFINEKTNKIHTNFIQTK-TATGRISSTAPNLQNIP------- 673

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R+    + G   + AD + IE  +LA ++ ++  
Sbjct: 674 -----------------IKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESL 716

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF + +DI++ T +K F      ++   R I K +   + Y+  A           L 
Sbjct: 717 IEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQE-----LS 771

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +++        S F  + + ++      D   +    + L+           R   + + 
Sbjct: 772 IKREEAQNFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKR---------RRYIREIN 822

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                   G   +                                         +     
Sbjct: 823 SQNYLERTGAERMA----------------------------------------INSIIQ 842

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
              +   ++   + Y      N+                      I+L VHDE++ E+P+
Sbjct: 843 GSASDIMKIAMIKVYNEFKNNNL-------------------KSKILLQVHDEMLIESPE 883

Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +  +M         +PLK      K +
Sbjct: 884 EECEKAQIIIKEMMENAYP--LKIPLKTNIETGKSW 917


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 94/678 (13%), Positives = 194/678 (28%), Gaps = 149/678 (21%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLF 75
           VGV  +AE+  +   A A   E +   + +       +   L Q      V      + F
Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGEYLADKLAQ------VAKQTQIAAF 376

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
              +  K + ++  ++ +    V A              A ++ +       GK  + + 
Sbjct: 377 HVKVLLKYVNVETWTQTFG-AEVAAYLLNP------LKTAYDYEDI------GKEYLGQI 423

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGER 185
             G  +       +    +  +               +   L              + E 
Sbjct: 424 FPGRQEVVGKKGDKDALAEKPEEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIEM 483

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L     ++   G +++ + +    E +     +L++ I     G   +      L   L
Sbjct: 484 PLVFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQIC-GQAGEDFNINSPKQLGAIL 542

Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F    +     ++    T   +L            IL     +       + L+  +  D
Sbjct: 543 FEKMKLPGGKKTKTGYSTAADVLDKLAPKHPIVRDILEYRQLTKLKSTYADGLAGYIGED 602

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  T      + TGR S      QN+P                               
Sbjct: 603 GRIHSTFHQT-ITATGRISSTEPNLQNIP------------------------IRMELGR 637

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +   G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+TP +
Sbjct: 638 LIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHTPFE 697

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+  QR   K +   + Y        +      L                         
Sbjct: 698 EVTDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS------------------------ 728

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                          +         + + + +  +      L                  
Sbjct: 729 ---------------ITRKEAADYIERYFSTYPKIKGFLDGL------------------ 755

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                   +++ K D ++     RR    ++K       +      R          + +
Sbjct: 756 --------VKKGKEDGYVTTMFGRRRPIPELKSSNFMQRSFG---ERIAM------NSPI 798

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
           Q  + DI+   M               ++L VHDE++ ET +     V  +    M +  
Sbjct: 799 QGTAADIIKIAMNRVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMRQAA 858

Query: 656 SWAKGLPLKAEGYEAKRY 673
           S    + L+ + +  K +
Sbjct: 859 S--LDVALEVDMHTGKNW 874


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/639 (15%), Positives = 187/639 (29%), Gaps = 131/639 (20%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGLPSS- 108
                 L     +  +    +N   + ++ K     +I     +   ++        SS 
Sbjct: 361 EKDVLKLKDVFENPEIKKYGYNLKNDCLILK---PYEINLTGLYFDIAIAEYLIDSTSSN 417

Query: 109 --LKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +K+  L  N       +   GK    +  K   D+       +      +      K 
Sbjct: 418 YEIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDK-----GKE 472

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            +  T E +       + E  L  +   +   G   D +++ +L++    E K L+  I 
Sbjct: 473 ALITTIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIY 532

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           +   G   +      L   LF   G+  +  ++    T   +L   +      D I    
Sbjct: 533 EYA-GENFNINSPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKITLYR 591

Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
             +      ++ L   ++   GR+  +      + TGR S      QN+P          
Sbjct: 592 QYTKLQSTYVDGLLNIINPKTGRIHSSFNQT-ITTTGRISSTEPNMQNIP---------- 640

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R   +A     LV AD + IE R+LA IA ++  I A
Sbjct: 641 --------------VRLEIGRELRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDA 686

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F+ G+DI+  T ++ FN P+D+V+KE R+  K +   + Y                    
Sbjct: 687 FSKGDDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYGISDFGLSNN---------- 736

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                               +     +     + A++  V +  
Sbjct: 737 ----------------------------------LGISKQVAKEYIDNYFARYPYVKKYM 762

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +D+ E           I                           RR    ++  +   + 
Sbjct: 763 EDIVEKAKNDGYVETYI--------------------------GRRRYIPELGSNNFIMK 796

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
               +L              +Q  + D++   M               ++L VHDE++ E
Sbjct: 797 NLGKRL---------AMNTPIQGSAADVIKIAMVKVYARLKSEGLKSKLILQVHDELIIE 847

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +PD+    V   L   M         + L  +    K +
Sbjct: 848 SPDSEKSYVADLLKEEMESAVD--LNVKLTVDAKWGKSW 884


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 184/659 (27%), Gaps = 156/659 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIP 89
              A+ ++ +      E      DL      L   TV+     +LF+       + I+  
Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398

Query: 90  SKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
            +      + A       S    L  A   L+             LI         +  Y
Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSL------------LID------EKTEGY 440

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
             +       W       ++  E+ T ELF+ +      E  L      +   G R++ +
Sbjct: 441 CRSCYEAYVIWAAAAVLEEKMKESGTEELFRTI------EMPLLFTLFAMEQAGVRVEAE 494

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            +    E +  +  +L+++I     G   +      L + LF    +     ++    T 
Sbjct: 495 ALRFYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGVILFEKLKLPHGKKTKTGYSTA 553

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L          + IL     +       + L+  + +DGR+ G       + TGR S
Sbjct: 554 ADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYICADGRIHGKFNQT-ITATGRIS 612

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   I   G   V AD 
Sbjct: 613 STEPNLQNIP------------------------VRMELGRLIRKVFIPEEGYVFVDADY 648

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA  +G+   I A+   +DI+  T ++ F+TP D+V++ QR   K +   + Y
Sbjct: 649 SQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                   +      L                                        +   
Sbjct: 709 G-----ISSFGLSQDLS---------------------------------------ITRK 724

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   +   + G+ +   D       +         RR                   
Sbjct: 725 EASEYIDRYFETYPGIKKFLDDTVAHAKEMGYVVTLFGRRRPVPELASSNFMQ------- 777

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
                        G+   +                     +Q  + D++   M       
Sbjct: 778 ----------RSFGERVAM------------------NAPIQGTAADVMKIAMIGVHREL 809

Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              K    +VL VHDE++ E  +     V  +    M +       +PL+ + +  + +
Sbjct: 810 TERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 89/656 (13%), Positives = 184/656 (28%), Gaps = 154/656 (23%)

Query: 38  DDEPVKLWDRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           +++ V L +     ++  D     L   + +E +  + H+      +  K L I I +  
Sbjct: 345 NEDKVYLINFKNIYSVNKDEANLALKAIMENEELTKIIHDGKSLVTVLNK-LDISIKTFE 403

Query: 93  WICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           +  T++ A       S  +        L       +   G+  I            Y+  
Sbjct: 404 F-DTAIAAYLIDSARSSYDLLTLINEYLG------EDITGEGEILEGKVNFKLRDIYELL 456

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           +    +       Y                     E  L  +  ++   G+ I+ +++  
Sbjct: 457 KKKIEEEKMEELYYKV-------------------EHPLIFVLSSMEALGFNINKNMLDD 497

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           L     +E  + +++I  L +    +      L   LF    + ++  ++    T   +L
Sbjct: 498 LAIKFKEEITRTEKEIYDLAEEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVL 556

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                       I      +      +  L   + SDG +  +      + TGR S    
Sbjct: 557 EKLQDKHEIIPKITYYRQITKLNSTYVEGLKNVIDSDGHIHSSFNQTV-TTTGRLSSTEP 615

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384
             QN+P                                +R   I    G  L+  D + I
Sbjct: 616 NLQNIP------------------------IKYEMGREIRKVFIPDEEGDILLSCDYSQI 651

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA ++ ++  I AF +  DI+  T ++ F  PI+ V+   R+  K +   + Y   
Sbjct: 652 ELRVLAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVYG-- 709

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                  +    L + +   +      FE + + + +   +  +  E      ++     
Sbjct: 710 ---ISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNR--- 763

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R     +    + +                                        
Sbjct: 764 ------RRFIPEIKSSNRIV---------------------------------------- 777

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
                     G+   +N                        + DI+   M N        
Sbjct: 778 -------KALGERLAMNAPIQG------------------SAADIIKLAMVNVYNKLKEK 812

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE++    +     V  +    M K       +PL+ +    K +
Sbjct: 813 ELKSTMILQVHDELILNVKENELEEVKQIVKDEMEKVLD--MKVPLEVDTNMGKTW 866


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 94/652 (14%), Positives = 194/652 (29%), Gaps = 123/652 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
             +A  +E    +  T+ +   S   ++L DE       ++    +  K   GI++    
Sbjct: 332 VGFALVNERGHFFIPTDIALASSRFKRWLEDEQCKKSVFDAKRAIVALKWN-GIELKGVD 390

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + A       +  +               +    +  + KG+  + P     A H
Sbjct: 391 F-DLLLAAYLLNPTDANGDVAAV--AKTKQYTDVQSDEEV--YGKGAKQAIPPTNVLAEH 445

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           +          K       +  ++   L   E  L  +   +   G ++D+D + ++ + 
Sbjct: 446 LVRKAKAIASLKETYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKE 505

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
              + +++++ I +L  G   +      L   LF    + +V  ++    T   +L    
Sbjct: 506 FTAQLEQIEQRIYELA-GTTFNINSPKQLGTILFEKLQLPIVKKTKTGYSTSADVLEKLA 564

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 + IL+           +  L + V  D     T+     ++TGR S      QN
Sbjct: 565 PYHEIIEQILHYRQLGKLQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQN 624

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388
           +P                                +R   + S +   +  AD + IE RV
Sbjct: 625 IP------------------------IRIEEGRKIRQAFVPSSDDWVIFAADYSQIELRV 660

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA IA ++  I AF +  DI+  T    F+   D+V+   R   K +   +         
Sbjct: 661 LAHIANDENLIAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIV-------- 712

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+     SQN                                +         +
Sbjct: 713 ------YGISDYGLSQN------------------------------LGITRKEAAEFIE 736

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            +   + GV +  +++ +           +  RR                          
Sbjct: 737 RYFRSYPGVKRYMEEVVQDAKQKGYVTTLLHRRRYLPDITSGNFN--------------- 781

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622
                  + + +NT                   +Q  + DI+ + M +        +   
Sbjct: 782 --VRSFAERTAMNT------------------PIQGSAADIIKKAMIDLANRLHEERLQT 821

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P      +  +   +M    S    +PLK + +    +
Sbjct: 822 RLLLQVHDELILEAPKEEIELLKKIVPDVMENAVS--LRVPLKVDYHFGPTW 871


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 97/673 (14%), Positives = 183/673 (27%), Gaps = 136/673 (20%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL 74
           K G++  ++  ++   A   D   V + +        AM   +       T +C+     
Sbjct: 329 KAGMYVISDSDILYGIAITCDARTVYVINSMSGVSSDAMSDIVRDIKTSGTSICIG---- 384

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKA 130
            +       +         +   + A          +  +     L       K   GK 
Sbjct: 385 -DIKSCLNDMDFSECDTNVLDVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKELTGKE 443

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            +  F   S +       +A       +     K       +L+       + E      
Sbjct: 444 ELNAFTFISDNFLELFAYKALVP-LLAMDTLIEKLKGTGMYDLYM------NVELPTVYT 496

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +  RG R+D   + +    +    K+L + I++       +      L   LF    
Sbjct: 497 LHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIEYAGKDF-NINSPKQLGPVLFEDMA 555

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
           +     ++    T   +L          + IL     S         L   +SSDGR+ G
Sbjct: 556 LPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQLSKLNSTYAIGLGSFISSDGRIHG 615

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T      + TGR S      QN+P                                +R  
Sbjct: 616 TFNQT-ITATGRISSTDPNLQNIP------------------------MRMELGRLIRKA 650

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I  +G   V AD + +E RVLA ++ +     AF N  DI+ TT ++ F  PID+V+  
Sbjct: 651 FIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVFGVPIDEVTPL 710

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   + Y               L + +   +      ++ ++  +++      
Sbjct: 711 QRRHAKAVNFGIVYG-----ISAFGLSEDLGISRKEASDFIEKYYDTYKSIKTYLDGQVK 765

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
              E      + G    +           +                              
Sbjct: 766 FAKENGYVKTMFGRIRPI---------PELKSSNFMQRS--------------------- 795

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                                      G+   +N+                    Q  + 
Sbjct: 796 --------------------------FGERVAMNSPI------------------QGSAA 811

Query: 608 DILCEGM----KNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKG 660
           DI+   M        + G    ++L +HDE++ ET      +V  +    M         
Sbjct: 812 DIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEMMHAAD--MT 869

Query: 661 LPLKAEGYEAKRY 673
           +PL+        +
Sbjct: 870 VPLEVGVASGNNW 882


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 104/668 (15%), Positives = 197/668 (29%), Gaps = 136/668 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
           +    +  +   A+++D       D         DL +    E    V+H    + ++  
Sbjct: 320 YPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLREIFEREDCEFVSHEIK-DFLVKL 373

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEGKALIARFCK 137
              GI+    +++ T+++A       S   L       L       +   GK    R  +
Sbjct: 374 SYKGIECK-SKYLDTAIMAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYE 432

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +    +       +   LF    K          K+L  L + E  L  + +++   
Sbjct: 433 EVSEEVMAEYICG---RCNHLFELKDKLMSFIEEMDMKKL--LLEIEMPLVEVLKSMEVD 487

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G+ +D +++ +L E I +   ++ + I K   G   +      L  +LF    + ++  +
Sbjct: 488 GFTLDRNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKT 546

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            I+     +      +      +  + R+    +   A
Sbjct: 547 KTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVA 606

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372
             TGR S      QN+P                                +R   I    +
Sbjct: 607 -ATGRISSTEPNLQNIP------------------------VREEFGRQIRRAFIPRTKD 641

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  +V AD + IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V+ E R   
Sbjct: 642 GY-IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAA 700

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           KV+                    G+                                   
Sbjct: 701 KVVNF--------------GIIYGISDY------------------------------GL 716

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   K+     +     +  K++GV +  + +             ++             
Sbjct: 717 AKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMN------------- 763

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR    ++        T  SQ  R            +Q  + DI+  
Sbjct: 764 -------------RRRYIPEINSRNF---TQRSQAERLAM------NTPIQGSAADIIKM 801

Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
            M               ++L VHDE+V +T       V  +    M         +PL  
Sbjct: 802 AMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVV 859

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 860 EIGVGPNW 867


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 103/694 (14%), Positives = 213/694 (30%), Gaps = 115/694 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTE--------QSA 52
           ++ +D ET         G+  Y +  VI   ++     D  V               + A
Sbjct: 139 EIAVDTETT--------GLDVYND--VIVGLSFTLPKADYHV-YIPVAHKVAGQQLSRRA 187

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSL 109
           + + L   L D  +  + HNS ++  +  +  G+ +   +   T +            +L
Sbjct: 188 VLTALKPILTDVNIGKILHNSKYDIHMLIRH-GLRLRGIK-HDTMIAMAVLNENEPTLAL 245

Query: 110 KNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
           KN          F +     EE     +        +  Y     +       +      
Sbjct: 246 KNLATKYGKYFGFEDKSYTYEELFGKTSFAEIPLDAALVYAAKDTHLTYELYKWQRQHLN 305

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             E+ R ++  L      E  L  +   +   G+ ID+D  ++ +  +  E   L+ ++ 
Sbjct: 306 QKESLRLIYDEL------ENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLT 359

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNI--TQLAKDLILNRL 282
           +       +      L   L+    + ++   E  T    L            D++L   
Sbjct: 360 EHFGD--INFNSPLQLAAVLYDKLKLPVIKGKERSTDVKTLKKLRDETKHEGIDVLLKYR 417

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +      +  L + +  DG L G+     A+ TGR++      QNLP +         
Sbjct: 418 ELTKLLGTYVEALPQLIKKDGLLHGSFNQ-VATVTGRFASREPNLQNLPPRA-------- 468

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 R  I+A     ++  D + IE RVLA ++G+    + +
Sbjct: 469 ----------------------RRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQEPY 506

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME--LALGYQGGAKVFKTMASHCGLDLQ 460
             G+D+Y T  ++ F    ++   + +    +    LA+ Y               L + 
Sbjct: 507 LKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTSMWTLAD-----QLGIT 561

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               N      F  +    +      +   +    + L G            +  G  + 
Sbjct: 562 VEEANQFIEDFFATYPDVYAFICATHEFAKQNEYVETLYGRK---------RRFPGHRE- 611

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
                     +V +  +     +     +            LP   R  +  VKG+   +
Sbjct: 612 --------KAIVYDKLATEICEILGTKAVPYDY--WQYKKELPVILRRQFRAVKGEVERV 661

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT- 639
                                +Q  + DI+   + N   +G  I+ TVHDE +       
Sbjct: 662 RRM-------------AVNARIQGTAADIMKRALINLYNDGRKIIGTVHDEALLIVNKNI 708

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V  + + M ++ +    +P++ +   + R+
Sbjct: 709 TLAEVEKIEACMIRSAN--LNVPIRVDTELSTRW 740


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 95/675 (14%), Positives = 182/675 (26%), Gaps = 146/675 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYL-RDETVMCVAHNSL----------- 74
           +T  A    +E +      E      +   L     R++     A NS            
Sbjct: 367 VTGLALCLGEEDIYCLAAGEQITGEYLLEQLRALCGRNQEQDNQAQNSQGQDNPGVRELW 426

Query: 75  -FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGK 129
             +       L +   +       V            +  +     L  +         K
Sbjct: 427 ALDLKSMLAYLELK-DTDPVYDAGVAGYLLNPLKDTYAYDDLARDYLGLTVPSRADLLAK 485

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLW 188
             +         +   DC       AW+       +  +     L+       D E  L 
Sbjct: 486 EDLGDALWRGEKNA-VDCVCYMGYTAWKAAAPLAGQLKDTGMYSLYT------DIEMPLI 538

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
                +   G +++   + +  + +     KL+++I + T     +      L   LF  
Sbjct: 539 YSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGHEF-NINSPKQLGEILFEQ 597

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             +     ++    T   +L            IL+    +         L+  +  DGR+
Sbjct: 598 MELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRI 657

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            G       + TGR S      QN+P                                +R
Sbjct: 658 HGKFNQT-ITATGRISSTEPNLQNIP------------------------VRMALGREIR 692

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +   G   V AD + IE R+LA ++G++  I+A+ + +DI+  T ++ F+ P+D+V+
Sbjct: 693 KVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVT 752

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
             QR   K +   + Y              GL + +          FE +   ++    +
Sbjct: 753 PLQRRNAKAVNFGIVYG-----ISAFGLSEGLSISRKEAVEYIDKYFETYPGVKTFLDGL 807

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
             Q  E      L G    +           +        +                   
Sbjct: 808 VKQGKEQGYVTTLYGRRRPI---------PELKSANFMQRQ------------------- 839

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                                        G+   +N+                    Q  
Sbjct: 840 ----------------------------FGERVAMNSPI------------------QGT 853

Query: 606 SRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658
           + D++   M    +          IVL +HDE++ ET      +V  +    M       
Sbjct: 854 AADVMKIAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEAVKEILTDKMKHAAD-- 911

Query: 659 KGLPLKAEGYEAKRY 673
             + L+ E    K +
Sbjct: 912 LRVSLEVEAEVGKSW 926


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 103/668 (15%), Positives = 197/668 (29%), Gaps = 136/668 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
           +    +  +   A+++D       D         DL +    E    V+H    + ++  
Sbjct: 84  YPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-DFLVKL 137

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCK 137
              GI+    +++ T+++A       S  +        L       +   GK    R  +
Sbjct: 138 SYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLKKYLKVDVLSHEEVFGKGKDRRRYE 196

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +    +       +   LF    K          K+L  L + E  L  + +++   
Sbjct: 197 EVSEEVMAEYICG---RCSHLFELKDKLMAFIEEMDMKKL--LLEIEMPLVEVLKSMEVD 251

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G+ +D +++ +L E I +   ++ + I K   G   +      L  +LF    + ++  +
Sbjct: 252 GFTLDRNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKT 310

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            I+     +      +      +  + R+    +   A
Sbjct: 311 KTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVA 370

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372
             TGR S      QN+P                                +R   I    +
Sbjct: 371 -ATGRISSTEPNLQNIP------------------------VREEFGRQIRRAFIPRTKD 405

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  +V AD + IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V+ E R   
Sbjct: 406 GY-IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAA 464

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           KV+                    G+                                   
Sbjct: 465 KVVNF--------------GIIYGISDY------------------------------GL 480

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   K+     +     +  K++GV +  + +             ++             
Sbjct: 481 AKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMN------------- 527

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR    ++        T  SQ  R            +Q  + DI+  
Sbjct: 528 -------------RRRYIPEINSRNF---TQRSQAERLAM------NTPIQGSAADIIKM 565

Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
            M               ++L VHDE+V +T       V  +    M         +PL  
Sbjct: 566 AMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKESMENVIK--LKVPLVV 623

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 624 EIGVGPNW 631


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 184/659 (27%), Gaps = 156/659 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIP 89
              A+ ++ +      E      DL      L   TV+     +LF+       + I+  
Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398

Query: 90  SKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
            +      + A       S    L  A   L+             LI         +  Y
Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSL------------LID------EKTEGY 440

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
             +       W       ++  E+ T ELF+ +      E  L      +   G R++ +
Sbjct: 441 CRSCYEAYVIWAAAAVLEEKMKESGTEELFRTI------EMPLLFTLFAMEQAGVRVEAE 494

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            +    E +  +  +L+++I     G   +      L + LF    +     ++    T 
Sbjct: 495 ALRLYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGVILFEKLRLPHGKKTKTGYSTA 553

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L          + IL     +       + L+  + +DGR+ G       + TGR S
Sbjct: 554 ADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYICADGRIHGKFNQT-ITATGRIS 612

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   I   G   V AD 
Sbjct: 613 STEPNLQNIP------------------------VRMELGRLIRKVFIPEEGYVFVDADY 648

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA  +G+   I A+   +DI+  T ++ F+TP D+V++ QR   K +   + Y
Sbjct: 649 SQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                   +      L                                        +   
Sbjct: 709 G-----ISSFGLSQDLS---------------------------------------ITRK 724

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   +   + G+ +   D       +         RR                   
Sbjct: 725 EASEYIDRYFETYPGIKKFLDDTVAHAKEMGYVVTLFGRRRPVPELASSNFMQ------- 777

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
                        G+   +                     +Q  + D++   M       
Sbjct: 778 ----------RSFGERVAM------------------NAPIQGTAADVMKIAMIGVHREL 809

Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              K    +VL VHDE++ E  +     V  +    M +       +PL+ + +  + +
Sbjct: 810 TERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  E    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 355 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK       + SI +              +          
Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 460

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            A  E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  L
Sbjct: 461 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 521 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 103/674 (15%), Positives = 193/674 (28%), Gaps = 148/674 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
              A+   D                            + L  +  +   +++ + + +F 
Sbjct: 390 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 449

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIA--RFC 136
             +GI++         + +       S    K A   L +     +   GK         
Sbjct: 450 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 507

Query: 137 KGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                +  +   R   V +  +LF +    D +   ++++      D E  L  +   + 
Sbjct: 508 VSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKME 560

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----- 250
             G  ID  L+ +    +  + ++L+E   ++  G          L   LF   G     
Sbjct: 561 QNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVVLEG 619

Query: 251 ---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
                 +  +  T + +LS          + L     +         L + V   DGR+ 
Sbjct: 620 AKPKKTISGNYSTSEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVH 679

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T +   A  TGR S      QN+P                                VR 
Sbjct: 680 TTFEQAVA-VTGRLSSTNPNLQNIP------------------------IRTEEGRKVRE 714

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             I+++G KL+ AD + IE R++A ++ +   ++AF N EDI+  T A+ F    DKV+ 
Sbjct: 715 AFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTP 774

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R I KV+                    G+     ++N+                    
Sbjct: 775 NDRRIAKVINF--------------GLMYGMSPFGLAKNL-------------------- 800

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      +     +     + A+  GV    +              +         
Sbjct: 801 ----------GIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTF-------- 842

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RRL   ++    +    A                  +Q  +
Sbjct: 843 ------------------GRRLWLPEIHAGGARRAAAERA----------AINAPMQGTA 874

Query: 607 RDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAK 659
            D++   M    K          ++L +HDE++ E P+     V   L  +M        
Sbjct: 875 ADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIMDSVTE--L 932

Query: 660 GLPLKAEGYEAKRY 673
            +PL AE      +
Sbjct: 933 HVPLIAEVGVGDNW 946


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/679 (13%), Positives = 185/679 (27%), Gaps = 135/679 (19%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
            SP  +    +      A I   +   ++        TE +       ++  DE      
Sbjct: 311 YSPSAIVVEVLEENYHNAEIVGISI-VNEVGSYYIP-TEVAINSDMFKKWANDEKNEKWI 368

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN----FSEHLTKME 126
            N+    +       I +    +    + +      +S        N    ++    +  
Sbjct: 369 FNAKQAIVSLGWN-DISLRGVTF-DIQIASYLIDPSASSHEMADISNRKRSYTVKSDEAV 426

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
            GK           +       R              +       ELFK L      E  
Sbjct: 427 YGKGKKR--QVPEEEIVAQHLVRKAAAINVLKEELESELKENEQFELFKDL------EMP 478

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L ++   +   G  I+ + +L++ E ++ +   ++++I +L      +      L   LF
Sbjct: 479 LSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGVEF-NINSPKQLGEILF 537

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302
               + +V  ++    T   +L          + IL            +  L + +    
Sbjct: 538 DKLQLPVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQLGKLNSTYIEGLLKVIHQKS 597

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 598 GKIHTIFNQA-LTQTGRLSSTEPNLQNIP------------------------IRLEEGR 632

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   +       +  AD + IE RVLA I+ ++    AF    D++  T    F+   
Sbjct: 633 KIRRAFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVFHVSA 692

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D+V+   R   K +   + Y               L                        
Sbjct: 693 DEVTSLMRRTAKAVNFGIVY-----GISDYGLSQNL------------------------ 723

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                           +     +     +   + GV +  + + E     V    +    
Sbjct: 724 ---------------GITRKEAKKFIDRYFDSYPGVKEYMESIVEEAR--VNGYVTTMLH 766

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           R   +P +  R                       + + +NT                   
Sbjct: 767 RRRYLPEITSRNFNL---------------RSFAERTAMNT------------------P 793

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+ + M    +          ++L VHDE++ E       ++  L   +M   
Sbjct: 794 IQGSAADIIKKAMVKMEEEMKEKGLKSTLLLQVHDELIFEVVQEEIETMKELVPKVMENA 853

Query: 655 PSWAKGLPLKAEGYEAKRY 673
            + A  +PLK +      +
Sbjct: 854 VNLA--VPLKVDFSFGDTW 870


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  E    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 355 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK       + SI +              +          
Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 460

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            A  E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I   
Sbjct: 461 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIH-S 519

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
             G   +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 520 LAGEAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
               I     +           T+ ++      ++LRDE+   V +++    +  K+  G
Sbjct: 328 MNGKIIGYGLSNQSGH-YFIP-TDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ-G 384

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKGSID 141
           +++    +  + + A       + ++          S     +   GK            
Sbjct: 385 LELNGVSF-DSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDEQVYGKGAKQAVPNLDAL 443

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S       +      +      K + +             D E  L  +   +  +G ++
Sbjct: 444 SEHVARKASMLWDLTEKLKTALKENHQDAL--------FFDLELPLAFILGEMEYQGVKV 495

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D   +  + + +  + K+L+E I  L  G   +      L + LF    + ++  ++   
Sbjct: 496 DRTRLTSMGKELGGKLKELEEKIYDLA-GETFNINSPKQLGVILFEKLELPVIKKTKTGY 554

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L          + IL+           +  L + +  D     T      ++TG
Sbjct: 555 STSADVLEKLQSKHEIVEYILHYRQLGKLNSTYIEGLLKVIHEDSDKVHTRFNQALTQTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 615 RLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSKEGWVIF 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I+G++  ++AF   ED++  T  + F+   D V+ E R   K +  
Sbjct: 651 AADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNF 710

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            +                G+     SQ+                                
Sbjct: 711 GIV--------------YGISDFGLSQS------------------------------LN 726

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + +   +  V +  +D+            S    R   +P L  R     
Sbjct: 727 ITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYV--STLLNRRRYIPELTSRNFNL- 783

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                            G+ + +NT                   +Q  + DI+ + M + 
Sbjct: 784 --------------RSFGERTAMNT------------------PIQGSAADIIKQAMIDM 811

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          ++L VHDE++ E P +    + T+   +M         +PLK +    
Sbjct: 812 AKRLEEENIEAKLLLQVHDELIFEAPQSEIEKLKTMVPDVMENAVE--LNVPLKVDFAFG 869

Query: 671 KRY 673
             +
Sbjct: 870 PTW 872


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 186/654 (28%), Gaps = 137/654 (20%)

Query: 30  ITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           +   A + D    +    D   +S +   L  +L D + +    +S   +   K+  GI 
Sbjct: 331 LLGIALS-DGNKTQYIPFDIAAKSDI---LRCWLEDSSKIKYMSDSKASQAALKRA-GIQ 385

Query: 88  IPSKRWICTSVLARTNGLPSSLKN---ACLALNF-SEHLTKMEEGKALIARFCKGSIDSP 143
           +    +    + +  N    S  +       L +      +   GK            + 
Sbjct: 386 LAGVDF-DLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAKR--------AI 436

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P     A HV          +  +EA  +  ++     D E  L  +   +   G  ++ 
Sbjct: 437 PEIDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVNR 496

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + K+ + + ++   L+++I     G   +      L + LF   G+ ++  ++    T
Sbjct: 497 ATLEKMGQELNEKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYST 555

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL            +  L + +        T      + TGR 
Sbjct: 556 AADVLEKLKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRL 615

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +R   + S     L  A
Sbjct: 616 SSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSNENWILFSA 651

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA ++ +   ++AF  G D++  T    F+   D+V    R   K +   +
Sbjct: 652 DYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGI 711

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+     SQN+                               + 
Sbjct: 712 V--------------YGISDYGLSQNLD------------------------------IT 727

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                     + A   GV Q   D+ +           ++                    
Sbjct: 728 RKEAATFIDKYFASFPGVKQYMDDIVQNAKFNGYVTTILN-------------------- 767

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+      L +      R            +Q  + DI+ + M +   
Sbjct: 768 ------RRRYLPDITSSNFNLRSFA---ERTAM------NTPIQGSAADIIKKAMIDMDA 812

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                     ++L VHDE++ E P      +  +   +M         +PLK +
Sbjct: 813 RLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIE--LSVPLKVD 864


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 103/698 (14%), Positives = 196/698 (28%), Gaps = 166/698 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------SAMPSDL 57
           +  D ET     L          QA +   ++ +D         +             D 
Sbjct: 341 IAYDCETNGLDAL----------QARLVGFSFCFDGIHGYYVPISHDYLGVGKQVDTKDA 390

Query: 58  LQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
            + +    +   V HN  F+ ++ K    +  P +    + +LA      +S+       
Sbjct: 391 KRAIEKIFSHPIVGHNLKFDLMIAKANFNLT-PKREIQDSMLLAYLLD-SASMMGL---- 444

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              + L +   GK +IA               +       +   EY   D  A   L +R
Sbjct: 445 ---DILMEKFFGKKMIAYDEVVKK-------GKTFGDVDLERASEYASEDAVACFCLQER 494

Query: 177 LIPLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L                 D E     +   +  +G +ID++    L+E +++   + +E+
Sbjct: 495 LKEELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEE 554

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT---GIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           I         +      L   LF      G+  V     T +  L     +     +++ 
Sbjct: 555 IFAHAKQNF-NINSPKQLSRVLFDDLKLRGLRRVKGGYSTDEKTLEELKDSHPIIPILME 613

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                         + +  + + ++  +    G + TGR S      QN+P         
Sbjct: 614 YREIFKLKNTYAEPILKLRTKENKIHTSFSQTG-TTTGRLSSRSPNLQNIP--------- 663

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                              A   +R   IA  GKKL+  D + IE R+LA  + +   + 
Sbjct: 664 ---------------VRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLD 708

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF    DI++ T    F       +K +R I K +   L Y  G                
Sbjct: 709 AFRKDLDIHLRTAQMVFGED----AKNKRHIAKTINFGLIYGMGT--------------- 749

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                         + +   K+  T  +     + A    V Q 
Sbjct: 750 -----------------------------RKLSQTLKISNTEAKEYIDRYFASFPTVRQF 780

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +   E           +  RR  N   +        +                      
Sbjct: 781 LRTEEEQILRRGYAQTLLGHRRYFNFKGVGDFMRSNFLREG------------------- 821

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSET 636
                               I Q  + D++   M         +G  ++L VHDE++ ++
Sbjct: 822 -----------------INAIFQGSAADLMKLSMNKIYQTFQNSGVKMLLQVHDELIFQS 864

Query: 637 P-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           P +    +   + ++M         +PL+      + +
Sbjct: 865 PEEEAEDAAREIENIMNGVYE--LRVPLRCNVAIGQNW 900


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  +    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 174 EVFRKWVESDQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 227

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK         + +        A    A     +    D 
Sbjct: 228 FTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDD- 282

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  L
Sbjct: 283 ---LEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 339

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 340 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 398

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 399 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 445

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 446 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 494

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 495 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 540

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 541 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 570

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 571 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 612

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 613 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 655

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 656 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 690


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  E    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 365 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 418

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK       + SI +              +          
Sbjct: 419 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 470

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            A  E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I   
Sbjct: 471 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIH-S 529

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
             G   +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 530 LAGEAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 589

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 590 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 636

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 637 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 685

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 686 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 731

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 732 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 761

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 762 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 803

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 804 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 846

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 847 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 881


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 169/663 (25%), Gaps = 131/663 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERI----LF 80
            Q+     A A  D  + +    E  A     + ++L D  +        F+        
Sbjct: 335 HQSETIAVALATAD-VIFVVPMAELQASALGFVREWLADADMEKAG----FDLHRTELSL 389

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSE-HLTKMEEGKALIARFC 136
               GI +    +    + A          S+   C           +   GK    +F 
Sbjct: 390 AWH-GIALKGISF-DIQLAAYLLDPTDSTQSISGLCGKYGLPTVQADESVYGKGA--KFK 445

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                                   +  + +     +L+  L      E+ L  +   +  
Sbjct: 446 LPEAGVLHGHIASKTDAVRSIAAIQREELEKTGMHKLYYDL------EQPLSRVLAGMEL 499

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G R D  ++ +L   +      +   +  L      +      L   LF   G+ ++  
Sbjct: 500 QGIRCDASVIEQLGAELESRISDIMTKVYTLAGMEF-NINSPRQLGEVLFEKLGLPVIKK 558

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFY 312
           ++    T   +L            IL     +      +  L + +  + G++    +  
Sbjct: 559 TKTGYSTDADVLEKLEPYHEIIPSILLFRQLAKLQSTYVEGLLKEIRPNTGKIHTYYRQT 618

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371
            A  TGR S      QN+P                                +R   +   
Sbjct: 619 IA-ATGRLSSQYPNLQNIP------------------------IRLEEGRQIRKAFVPSE 653

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  ++ AD + IE RVLA I+G++   +AF    DI+  T +  F    + V    R  
Sbjct: 654 PGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMRRQ 713

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +   + Y               L++ +          F  ++    +   +  Q   
Sbjct: 714 AKAVNFGIVYG-----ISDFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQART 768

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 L+           R     +     ++                           
Sbjct: 769 DGYVTTLLER---------RRYLPEIKASNFNIRSFAERTAMNTPIQGTAADI------- 812

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                   I L   R       +G  S +                               
Sbjct: 813 --------IKLAMVRMDEQLRARGLRSRM------------------------------- 833

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                        +L VHDE+V E P      +  L   +M         +PLKA+    
Sbjct: 834 -------------LLQVHDELVFEVPADELELMKELVPQVMESAIK--LDVPLKADVSFG 878

Query: 671 KRY 673
             +
Sbjct: 879 DNW 881


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  +    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 355 EVFRKWVESDQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK         + +        A    A     +    D 
Sbjct: 409 FTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDD- 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  L
Sbjct: 464 ---LEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 521 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes str. 4b F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
          Length = 875

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  +    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 355 EVFRKWVESDQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK         + +        A    A     +    D 
Sbjct: 409 FTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDD- 463

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  L
Sbjct: 464 ---LEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 521 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 103/668 (15%), Positives = 197/668 (29%), Gaps = 136/668 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
           +    +  +   A+++D       D         DL +    E    V+H    + ++  
Sbjct: 320 YPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-DFLVKL 373

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCK 137
              GI+    +++ T+++A       S  +        L       +   GK    R  +
Sbjct: 374 SYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLKRYLKVDILSHEEVFGKGKDRRRYE 432

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +    +       +   LF    K          K+L  L + E  L  + +++   
Sbjct: 433 EVSEEVMAEYICG---RCSHLFELKDKLMAFIEEMDMKKL--LLEIEMPLVEVLKSMEVD 487

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G+ +D +++ +L E I +   ++ + I K   G   +      L  +LF    + ++  +
Sbjct: 488 GFTLDRNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKT 546

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            I+     +      +      +  + R+    +   A
Sbjct: 547 KTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVA 606

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372
             TGR S      QN+P                                +R   I    +
Sbjct: 607 -ATGRISSTEPNLQNIP------------------------VREEFGRQIRRAFIPRTKD 641

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  +V AD + IE RVLA ++ ++  I+AF N EDI++ T ++ F  P   V+ E R   
Sbjct: 642 GY-IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAA 700

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           KV+                    G+                                   
Sbjct: 701 KVVNF--------------GIIYGISDY------------------------------GL 716

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   K+     +     +  K++GV +  + +             ++             
Sbjct: 717 AKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMN------------- 763

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR    ++        T  SQ  R            +Q  + DI+  
Sbjct: 764 -------------RRRYIPEINSRNF---TQRSQAERLAM------NTPIQGSAADIIKM 801

Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
            M               ++L VHDE+V +T       V  +    M         +PL  
Sbjct: 802 AMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVV 859

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 860 EIGVGPNW 867


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/635 (14%), Positives = 173/635 (27%), Gaps = 142/635 (22%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
               + L      E+V    H++  + +       I++ +     T V A      +S  
Sbjct: 373 DPCLTVLKAICECESVKKYFHDAK-QALWMLHHHSIELKALA-ADTMVSAYLLNPTAS-- 428

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                              AL         +      +RA  ++       + K      
Sbjct: 429 ------------NYDINDVALEHLGMVLPAEGETAMASRAEAIRRLAQ-KLFEKLAERQE 475

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             L      L+  E  L  +   +   G  +D   +  +   +    + L   I +L  G
Sbjct: 476 DRL------LTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELA-G 528

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF    + ++  ++    T   +L           LIL     +  
Sbjct: 529 ENFNINSPKQLGPILFEKLKLPVLKKTKTGYSTDAEVLEKLAEEHEIVALILEYRQMAKL 588

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L+  V    GRL  T      + TGR S      QN+P               
Sbjct: 589 KSTYTDGLAALVDPQTGRLHSTFHQTV-TATGRLSSAEPNLQNIP--------------- 632

Query: 347 LNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   I    G  ++ AD + IE RVLA ++ ++  + AF  G
Sbjct: 633 ---------IRLETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQG 683

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +DI+  T ++ F  P+D+V+ E R+  K +   + Y                        
Sbjct: 684 QDIHTRTASEVFGVPMDQVTSEMRSRAKAVNFGIVY-----GISDFGL------------ 726

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                      A   K+     +     + A+  GV Q    + 
Sbjct: 727 ---------------------------ARDLKVSRKEAQGYIDHYFARCPGVRQYIDRVI 759

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +           ++                          RR    ++      +     
Sbjct: 760 KEAKETGYVNTLLN--------------------------RRRYLPELFSKNFNIRNFGE 793

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639
           +               +Q  + DI+   M               +VL VHDE++ + P+ 
Sbjct: 794 RA---------AMNTPIQGTAADIIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPEN 844

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
              S+  L    M         +PL  +      +
Sbjct: 845 EIESLIMLVRQSMENALQ--LDVPLVVDIKLGPNW 877


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/651 (13%), Positives = 156/651 (23%), Gaps = 134/651 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           I    ++ +     L         + + + +   D  V    HN+  +    +     D+
Sbjct: 338 IEALGFSVEAGN-YLLPLGAADLEILAGVRRLFADAAVAKHMHNAK-D--FLRWAPDFDL 393

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +  +  + V A                       +               +   P    
Sbjct: 394 ANICF-DSMVAAYLVNP------LAA-----NQQLEDVVH----QYLNLVLVPDGPAAPA 437

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A           Y      A    ++        E  L  +   +   G  +D D +  
Sbjct: 438 TAADCIR----RLYPVL--RAELRGYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEA 491

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           L E       +L   I  L      +      L   LF   G+     ++    T   +L
Sbjct: 492 LSEEFGTRAGELAARICTLAGEDF-NLNSPRQLGYILFEKLGLPAGKKTKTGYSTDAGVL 550

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                      L+L             + L+  V    GRL  TL     + TGR S   
Sbjct: 551 LDLAEKHEIAALLLEYRQLIKLKTTYADGLAALVDPATGRLHTTLHQTV-TNTGRLSSAE 609

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R   I     + L+ AD + 
Sbjct: 610 PNLQNIP------------------------IRMEEGRRIRKVFIPRDPARVLLTADYSQ 645

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++G+   I AF + +DI+  T A+ F  P++ V+ E R+  K +   + Y  
Sbjct: 646 IELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYG- 704

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          F      + +         E       +    
Sbjct: 705 ----ISDFGLARDLKVTRAEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRRR 760

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            L           +      +                                       
Sbjct: 761 PL---------PELFSANHTVRSFGERAAVNTPIQGTAADII------------------ 793

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
              +L    +       N                                          
Sbjct: 794 ---KLAMVKIHARMRERN--------------------------------------LKTL 812

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           ++L VHDE++ + P     +V  L    M         +PL  +      +
Sbjct: 813 MILQVHDELLFDVPAEEVCTVAPLVKAEMETVLP--LNVPLTVDLKIGHNW 861


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 103/668 (15%), Positives = 203/668 (30%), Gaps = 136/668 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
           +    +  I   A+++ ++ V   D  +      DL +    E      H    + ++  
Sbjct: 10  YPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEIFEKEEFEFTTHEIK-DFLVKL 63

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEGKALIARFCK 137
              GI+    ++I T+++A       S   L       L       +   GK    +  +
Sbjct: 64  SYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLE 122

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +    D   +   +   LF    K          K+L  L + E  L  + + +   
Sbjct: 123 EIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKKL--LLEIEMPLVEVLKLMEVS 177

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G+ +D +++ +L + I     ++ + I K   G   +      L  +LF    + ++  +
Sbjct: 178 GFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKT 236

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            I+     +      ++     +  + R+    +    
Sbjct: 237 KTGYSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDENNRVHSNFKQMV- 295

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372
           + TGR S      QN+P                                +R   I    +
Sbjct: 296 TATGRISSTEPNLQNIP------------------------IREEFGRQIRRAFIPRTKD 331

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  +V AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P++KV+ E R   
Sbjct: 332 GY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAA 390

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   +                G+     S                             
Sbjct: 391 KAVNFGII--------------YGISDYGLS----------------------------- 407

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
               K+     +     +  +++GV +  + +             ++             
Sbjct: 408 -RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMN------------- 453

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR    ++        T  SQ  R            +Q  + DI+  
Sbjct: 454 -------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQGSAADIIKM 491

Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
            M    +          ++L VHDE+V +T       V  +    M         +PL  
Sbjct: 492 AMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVEIVKKILKENMENVIK--LKVPLVV 549

Query: 666 EGYEAKRY 673
           E      +
Sbjct: 550 EIGIGPNW 557


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/682 (13%), Positives = 205/682 (30%), Gaps = 138/682 (20%)

Query: 10  TRSPQPLPK---VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           T     L K   + ++ +     I   ++A  D      +  +         + L ++ +
Sbjct: 302 TYVKNVLGKFDVLSLYPFIYDGKIKAVSFACGDGS-FFVEIDDYDNF-----KLLNNDKL 355

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHL 122
             + H+   + ++     GI++   + + T+++        S  +        L      
Sbjct: 356 TLIGHDLK-DFLVNISYCGIELN-CKILDTAIMTYLLNPSESNYDISRVLKKYLKEDLQN 413

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                GK    +           D   +      +L  +      E   E   +     +
Sbjct: 414 IDDIVGKGRNKKSYDDIDKKLLVDYMCSAASNLSKLKDKLMSFIKEMEMEDLLK-----N 468

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  + +++   G+ +D D++  + + I ++  K+ +DI         +   T  L 
Sbjct: 469 VEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYDAAGYEF-NINSTKQLS 527

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            +LF    +  +  ++    T   +L+           I+            ++     +
Sbjct: 528 EFLFDKLNLPAIKKTKTGYSTDMEVLAELIPYNDIVGEIIEYRQLMKLKSTYIDGFIPIM 587

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             + R+  T +   A  TGR S      QN+P                            
Sbjct: 588 DENNRVHSTFKQTVA-ATGRISSTEPNLQNIP------------------------VREE 622

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   ++S     ++ AD + IE RVLA ++ ++  I++F N EDI++ T ++ F 
Sbjct: 623 FGRRIRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFK 682

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              ++V+ E R   K +   +                G+     S+++K           
Sbjct: 683 VSKEEVTSEMRRRAKAVNFGIV--------------YGISDYGLSKDLK----------- 717

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                              +     +     +  +++GV      + +           +
Sbjct: 718 -------------------ISRKEAKEYIDNYFDRYKGVKNYIDSIVKFAKENGYVTTIL 758

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
           + RR                                G+   +NT                
Sbjct: 759 NRRRYIPEINSKNFNQ-----------------RSFGERMAMNT---------------- 785

Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
              +Q  + DI+   M               ++L VHDE++ +T       V   L S+M
Sbjct: 786 --PIQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIM 843

Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673
                    +PL  +  + K +
Sbjct: 844 ENIIK--LKVPLVVDIGQGKNW 863


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/605 (15%), Positives = 168/605 (27%), Gaps = 138/605 (22%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           +  ++ +  G+ +         +LA      +S   A     +                 
Sbjct: 357 DLTVWARREGVRVQPG--EDPLLLAYLYDPTNS-DPAATVRRYG---------------- 397

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                 S           + W++ GE           L+       + ER L  +   + 
Sbjct: 398 --AGDWSEDPAARALAAAELWRILGERLAG----EEALWWLYR---EVERPLAGVLAEME 448

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G R+D+  +  L   + +E   ++ ++ +L  G   +      L + L+   G+    
Sbjct: 449 HAGVRVDVAYLEALSAELGREIAAIEAEVHRLA-GRAFNLNSRDQLEVILYDELGLTPTR 507

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                    T  + L          + IL     S      L+ L   V    GR+    
Sbjct: 508 RTQKTGRRSTSAAALEALVGAHPIVERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRY 567

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                                +R   +
Sbjct: 568 HQTG-TATGRLSSSDPNLQNIP------------------------VRTEVGRRIRRAFV 602

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  LV AD + IE RVLA ++G++   + F    DI+  T +  F  P + V   +R
Sbjct: 603 AEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEAVDPFRR 662

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L ++           FE + + +++     +Q 
Sbjct: 663 RAAKTVNFGVLYGMSPHRL-----SRELGIEYAEAERFIQRYFESYPRVQAYIERTLEQA 717

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            E    + L G          R     +    +++ E    +                  
Sbjct: 718 REKGYVETLFGR---------RRYIPDIRSRNRNVREAAERMAFNMPVQGTAADL----- 763

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            +L    +  +   L                             
Sbjct: 764 ----------------MKLAMVKLAPEIRSLG---------------------------- 779

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
                         ++L VHDE+V E P     +V  +   +M     WA  +PL+ E  
Sbjct: 780 ------------ARLILQVHDELVLEAPQERAEAVARVVREVMEGA--WALDVPLEVEVG 825

Query: 669 EAKRY 673
             + +
Sbjct: 826 IGENW 830


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 92/658 (13%), Positives = 168/658 (25%), Gaps = 138/658 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKK 82
             A +    ++                 P    DL   L D  +  + H+  + R +  K
Sbjct: 331 MDAHLIGIGFSPSRGEGFYVPAEVLEKSPEVKSDLKAVLADPGITKIIHDGKYARTVLAK 390

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
              I +       T + A                +    +     G  L           
Sbjct: 391 ---IGMDFVYNFDTMLAAYLLDPSKP------RYDLESVVF-DNLGVELKG-------TE 433

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P             +     K    A  ELF         E  L  +   +   G ++D
Sbjct: 434 DPGRRVAYLIPLKEIM---SEKLKSCAMEELFF------GVEMPLSFVLSDMEMTGIKVD 484

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259
            + +  L     ++ ++L  +I +L      +      L   LF    + ++   +    
Sbjct: 485 PEKLESLSREFGEKLEELTGEIYRLAGVEF-NINSPKQLGEVLFEKLNLPVIKKKKSGYS 543

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L          + IL             + L   V     R+         + TG
Sbjct: 544 TDAEVLEKLKNAHPVVEKILEYRFLMKMKSTYADGLLALVDKSTYRIHSNFNQT-ITATG 602

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                                +R   +A      L+
Sbjct: 603 RISSTEPNLQNIP------------------------VKTDIGRKIRGVFVAESPEHVLL 638

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE RVLA ++G++  I+AF  GEDI+  T ++ F  P ++V+   R   K +  
Sbjct: 639 SGDYSQIELRVLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNF 698

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L +          +    + +   +                
Sbjct: 699 GIIYG-----ISDYGLAQNLGISTAEAREYIENYLNRYPKVRDYIRETIRNARMSGYVTT 753

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556
           ++           R     +     +L        +      SA  +  V  + +  H  
Sbjct: 754 ILNR---------RRYIPEINSRNYNLRSFAERVAMNTPIQGSAADIIKVAMVKITNHF- 803

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                                             R YG K    ++Q             
Sbjct: 804 ----------------------------------REYGLKAKM-LIQ------------- 815

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                      VHDE++ + P +    V  +    M         +PL  +  E   +
Sbjct: 816 -----------VHDELIFDVPKSELEVVKNIVKDDMENAIP--LKVPLVVDFKEGYTW 860


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 179/664 (26%), Gaps = 132/664 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81
               +   A+ WD              +    L  +L D       H    +     +  
Sbjct: 353 HDGEVRGVAW-WDGHTAYFIPFERLVQSDMRPLADWLADARRPKRTH----DSHRAEVAL 407

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLT-KMEEGKALIARFCK 137
              G+      + CT + A          +L +             +   GK    +F  
Sbjct: 408 FWHGLAFRGTSF-CTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAEDVYGKGA--KFKV 464

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              D+      R   + A  +            R LF  L      E  L      +   
Sbjct: 465 PDRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDL------ELPLSSELAVMETV 518

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G R+D   +    E + +   K++ +I +L  G   +   T  L   LF   G+ +V  +
Sbjct: 519 GVRVDAAALAAYGEELREAAAKVEREIYELA-GTTFNIGSTKQLGEILFDKLGLPVVKKT 577

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + IL+    +      +  L + +    G++    Q   
Sbjct: 578 KTGYSTDADVLEELAPYHPIVEKILHYRQLTKLQSTYIEGLLKEIRPQTGKIHTYYQQTI 637

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372
           A  TGR S      QN+P                                +R   +    
Sbjct: 638 A-ATGRLSSQFPNLQNIP------------------------IRLEEGRKIRKAFVPSEP 672

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  ++ AD + IE RVLA ++G++   +AF  G DI+  T    F    D+V    R   
Sbjct: 673 GWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRVDARMRRQA 732

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               L++ +          F  +   +++   + +Q    
Sbjct: 733 KAVNFGIIYG-----ISDFGLAQNLNISRKEAAEFIRQYFAVFSGVKAYRERIVEQARRD 787

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVM 551
                L+G          R     +     +L        +      +A  +     + +
Sbjct: 788 GYVTTLLGR---------RRYLPDINASNYNLRSFAERTAMNTPIQGTAADIIKTAMVRL 838

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         RR+    +K                                     
Sbjct: 839 T-------------RRMRDVGLKS------------------------------------ 849

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE-GYE 669
             +                E+V E P     ++  L   +M         +PLK +  + 
Sbjct: 850 RMLLQVHD-----------ELVFEVPPDELDAMRELVTDVMESAVP--LDVPLKVDVSWG 896

Query: 670 AKRY 673
           A  Y
Sbjct: 897 ADWY 900


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 187/694 (26%), Gaps = 153/694 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------A 52
           K+  D E+ S             ++A +   ++ +D E                      
Sbjct: 345 KIGFDCESDSLN----------MQEANLVGFSFCFDGENAYYVPVGHHYLGVGCQLTHTQ 394

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
               L +     T   + HN  F+  L   TL ++  +     + +L        P  L 
Sbjct: 395 AKIALKRIF---TYPLIGHNLKFDLSLIFHTLELE-HTGEIYDSMILGWLYDSIAPIGLD 450

Query: 111 N-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                  N +         K       +          T+     A   F  Y + +   
Sbjct: 451 KQMLKWFNHTMISFDSVVAKD------ENFSQVNIAAATQYAAEDAIATFRLYHRLEEVF 504

Query: 170 TRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            +  +   L   +  E     +   +   G ++D+ L+  L+E  ++   +L   I +L 
Sbjct: 505 YKREWSSILELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELC 564

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLASS 285
            G   +      L   LF   G+           T +  L           LIL+    +
Sbjct: 565 -GETFNLNSPQQLAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAHPVIALILDYREVN 623

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYG-ASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 +  L    S++ + R    F    + TGR S      QN+P             
Sbjct: 624 KLKSTYIEPLLRFGSANDKHRIYTSFLQSGTATGRLSSKSPNLQNIP------------- 670

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   I+  G  L+  D + IE R+LA    +   I++F  
Sbjct: 671 -----------VRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQ 719

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            +DI+  T A+ F      ++ ++RAI K +   L Y  G+                   
Sbjct: 720 DKDIHFETAARLFGVE---LAAQKRAIAKSINFGLIYGMGS------------------- 757

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                     + A   ++     +   +++ A    +       
Sbjct: 758 -------------------------KKLAQTLQISLKEAKNYIESYFALFPTIKNFLNAQ 792

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E           +  RR  +            +                          
Sbjct: 793 KEFLLENGYSQTLLGHRRYFDFKNATDFMKANFLREG----------------------- 829

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTP 640
                          +I Q  + D++   M    K      + ++L VHDE++ E P   
Sbjct: 830 -------------INSIFQGSAADLIKLSMCEIHKRYGHSDFKMLLQVHDELIFEAPQEK 876

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                     +M         +PLK      K +
Sbjct: 877 AHIYAQEAAQIMNHIYE--LEVPLKCGISIGKNW 908


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 94/637 (14%), Positives = 183/637 (28%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  E    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 11  EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 64

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK       + SI +              +          
Sbjct: 65  FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 116

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            A  E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+E I  L
Sbjct: 117 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 176

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF   G+  V  ++    T   +L   +      D IL     
Sbjct: 177 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 235

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 236 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 282

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 283 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 331

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   D+V    R   K +                    G+     S
Sbjct: 332 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 377

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 378 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 407

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR   +P +V R                       + + +NT 
Sbjct: 408 IVRFAKEKGYVETILHRRR--YIPEIVSRNFN---------------VRGFAERTAMNT- 449

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 450 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 492

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 493 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 527


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 103/674 (15%), Positives = 193/674 (28%), Gaps = 148/674 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
              A+   D                            + L  +  +   +++ + + +F 
Sbjct: 331 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 390

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIA--RFC 136
             +GI++         + +       S    K A   L +     +   GK         
Sbjct: 391 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 448

Query: 137 KGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                +  +   R   V +  +LF +    D +   ++++      D E  L  +   + 
Sbjct: 449 VSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKME 501

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----- 250
             G  ID  L+ +    +  + ++L+E   ++  G          L   LF   G     
Sbjct: 502 QNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVVLEG 560

Query: 251 ---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
                 +  +  T + +LS          + L     +         L + V   DGR+ 
Sbjct: 561 AKPKKTISGNYSTSEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVH 620

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T +   A  TGR S      QN+P                                VR 
Sbjct: 621 TTFEQAVA-VTGRLSSTNPNLQNIP------------------------IRTEEGRKVRE 655

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             I+++G KL+ AD + IE R++A ++ +   ++AF N EDI+  T A+ F    DKV+ 
Sbjct: 656 AFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTP 715

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R I KV+                    G+     ++N+                    
Sbjct: 716 NDRRIAKVINF--------------GLMYGMSPFGLAKNL-------------------- 741

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      +     +     + A+  GV    +              +         
Sbjct: 742 ----------GIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTF-------- 783

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RRL   ++    +    A                  +Q  +
Sbjct: 784 ------------------GRRLWLPEIHAGGARRAAAERA----------AINAPMQGTA 815

Query: 607 RDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAK 659
            D++   M    K          ++L +HDE++ E P+     V   L  +M        
Sbjct: 816 ADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIMDSVTE--L 873

Query: 660 GLPLKAEGYEAKRY 673
            +PL AE      +
Sbjct: 874 HVPLIAEVGVGDNW 887


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 92/682 (13%), Positives = 187/682 (27%), Gaps = 128/682 (18%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDET 65
           D E    +   ++   AY  +        A  +      WD T+  A  + L+++L   T
Sbjct: 310 DFEKFLQESKDQMVGIAYFVEDNTLGLGVAIGERVGYSEWDLTDTEAK-AVLIEFLESAT 368

Query: 66  VMCVAH---NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              + H   N   E +     +G+ +    +  T + A      +   +         + 
Sbjct: 369 YQKIVHDSKNFKHELL----KVGLGLNGVCF-DTFIAAYLLHPTNKSYDLAELEELFINK 423

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
             +   + L+ +           D  R N++             ++   +         D
Sbjct: 424 QSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLALSVTEAMKEALQEQNMTRLFYD 483

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G ++D + +    E +      L   I +   G   +      L 
Sbjct: 484 IEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLDTLTTSIYEAA-GESFNINSPKQLG 542

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           + LF   GI     ++    T   +L            IL     +      ++ L   +
Sbjct: 543 VILFEKLGIPCAKKTKTGYSTAAEVLEALKNDYPIVAQILEYRQYAKLKSTYVDGLLNVL 602

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           +   ++  T      + TGR S      QN+P                            
Sbjct: 603 TEQNKIHSTFNQT-ITATGRLSSTEPNLQNIP------------------------VKFE 637

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S      +  D + IE RVLA ++G+   IKAF    DI+  T ++ F+
Sbjct: 638 MGKKIRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFH 697

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            P + V+  QR+  K +                    G+                     
Sbjct: 698 VPFEDVTSMQRSNAKAVNF--------------GIVYGIS-------------------- 723

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                         +   K+     +     +  K+  +     ++ +            
Sbjct: 724 ----------AFALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQNGYVETLY 773

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                                      R+    ++      +     ++           
Sbjct: 774 H--------------------------RKREIPEILASNYNMREFGKRV---------AM 798

Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
              +Q  S DI+   M    +          ++LTVHDE++ +        V   L   M
Sbjct: 799 NTPIQGTSADIIKIAMIRVHQKLKEHSLKSKLILTVHDELLIDAHKDEVEIVKKLLKEEM 858

Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673
                    +PL  + ++   +
Sbjct: 859 EHAAD--LSVPLVVDVHQGANW 878


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 91/695 (13%), Positives = 192/695 (27%), Gaps = 154/695 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54
           S + ID ET S              ++ I   + ++ +          +         + 
Sbjct: 354 SYIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKDYII 403

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
               +   +     +  N  F+  + K+  G ++    +  T + A         SL   
Sbjct: 404 QKFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFL 460

Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +                   P   T  +     ++   Y   D + T 
Sbjct: 461 AAKYLMHKNIKYEEIV----------------PQHSTLKD--IPLEIASNYAAEDADITF 502

Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            LF  L                E     +   I + G  +D + + +    + QE K ++
Sbjct: 503 RLFNILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIE 562

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLIL 279
            ++++       +   +  L   LF    I +      + T   +L        + + ++
Sbjct: 563 NEVIQSIGIEF-NLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLI 621

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           N    +       + L E ++       T      + TGR S      QN+P        
Sbjct: 622 NYRQLAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATGRISSTAPNLQNIP-------- 673

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R+    + G   + AD + IE  +LA ++ ++  I
Sbjct: 674 ----------------IKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLI 717

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF + +DI++ T +K F      ++   R I K +   + Y+  A           L +
Sbjct: 718 EAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQE-----LSI 772

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
           ++        S F  + + ++      D   +    + L+           R   + +  
Sbjct: 773 KRDEAQNFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKR---------RRYIREINS 823

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                  G   +                                         +      
Sbjct: 824 QNYLERTGAERMA----------------------------------------INSIIQG 843

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
             +   ++   + Y      N+                      I+L VHDE++ E+P+ 
Sbjct: 844 SASDIMKIAMIKVYNEFKNNNL-------------------KSKILLQVHDEMLIESPEE 884

Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +  +M         +PLK      K +
Sbjct: 885 ECEKAQIIIKEMMENAYP--LKIPLKTNIETGKSW 917


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/737 (13%), Positives = 182/737 (24%), Gaps = 196/737 (26%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51
            +  D ET                +A +   ++ +D                         
Sbjct: 491  VAFDCETNGLD----------VREADMVGFSFCFDGLHAYYVPFLHGGIKREKSKYEVMK 540

Query: 52   ------------------------------------AMPSDL-----LQYLRDE-TVMCV 69
                                                  P+ +      + L    +   +
Sbjct: 541  SQSISQNLFSTEEAKPTFSLFDDTTMSKDSADNDTTNAPAQISQSDAKKALEILFSYPLI 600

Query: 70   AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA-CLALNFSEHLTKME 126
             HN  F+  +     GI         + +LA  +    S  L N      N +       
Sbjct: 601  GHNIKFDLHIAWHNFGIKPKHTP-QDSMLLAWLDDPSQSVSLDNLMKKHFNHNMIAFSDI 659

Query: 127  EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
              K            +  Y    A        F  Y          LF       D E  
Sbjct: 660  VPKKA-TFDSIDIKTASNYAAEDAAA-----TFQLYFYFKNTLYPHLFTLAK---DLEFP 710

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
                   + D G  I+      L+   +   ++L ++I +   G+  +      +   LF
Sbjct: 711  FIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKA-GVSFNLNSPKQVAEILF 769

Query: 247  LITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
                +D     +    T ++ L     +     L+L            +  + +   ++ 
Sbjct: 770  DTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYREIFKLFSTYIEPILKLGKNEN 829

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+  T    G + TGR S      QN+P                                
Sbjct: 830  RIYTTFLQTG-TNTGRLSSKSPNLQNIP------------------------VRSEMGRS 864

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +R   ++ +G KL+  D + IE R+LA  +G+   +++F N  DI+  T    F    +K
Sbjct: 865  IRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHAETAKLLF-KDSNK 923

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
                 R+I K +   L Y  G                                       
Sbjct: 924  DFSLLRSIAKSINFGLIYGMG--------------------------------------- 944

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                   + +    +  T  +   + + A    V Q  +   +           +  +R 
Sbjct: 945  -----ARKLSQTLNITQTEAKQYIEDYFATFPSVKQFLESQKDSILKNGYSSTLLGRKRY 999

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
             +            +                                          I Q
Sbjct: 1000 FDFFSATEFMRANFLREG------------------------------------VNTIFQ 1023

Query: 604  AISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656
              + D++   M    K          ++L VHDE++ E  D+   S+   L  +M     
Sbjct: 1024 GSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELKEIMENI-- 1081

Query: 657  WAKGLPLKAEGYEAKRY 673
            +   +PL         +
Sbjct: 1082 YKLKVPLVCNLSIGNTW 1098


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 196/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++   +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R   +P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +       +PLK + +  
Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 100/672 (14%), Positives = 192/672 (28%), Gaps = 136/672 (20%)

Query: 31  TLCAYAWDDEPVKLWDRTEQS-AMPSD------LLQYLRDETVMCVAHNSLFERILFKKT 83
              A A +           +   +  +      L+    D  ++   ++   +   F   
Sbjct: 365 VGLALATEPGRGWYLVFQSEESKVLDEAEVFNKLIPLFEDHAIVKTGYDIKADYHWF-NA 423

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLK-NACL-------------ALNFSEHLTKMEEGK 129
           L I  PS+      V+A           +                 L  S    +   GK
Sbjct: 424 LNIS-PSRLLNDVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGK 482

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
           A   +    ++ +       A         G++ ++   A+R+L +      + ER L  
Sbjct: 483 AGKRQLSPSAVKADDIGQWWAERADFVLRLGQWLEQ-GLASRQLSRV---YQEIERPLSK 538

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
               I + G ++D++ V +L     ++ + ++     L      +      L   LF   
Sbjct: 539 TLAAIEENGVKLDVEFVHELSTRFKRDLEDIERQAHDLAGVEF-NLDSPKQLADVLFERM 597

Query: 250 GIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA-VSSDG- 303
           G+ +   +      T + +L+          LIL             + L    +  DG 
Sbjct: 598 GLPVKSKTASGAPSTNEEVLTELAAEHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDGD 657

Query: 304 -RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            RL  T    GA +TGR +      QN+P                               
Sbjct: 658 QRLHTTYNQTGA-QTGRLNSNDPNLQNIP------------------------VRSEEGR 692

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +A  G ++V AD + IE R++  ++ +   I+AF  G+DI+  T A+      +
Sbjct: 693 SIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEEE 752

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +VS EQR   K +   L Y               L + +        + FE +     + 
Sbjct: 753 QVSAEQRRSAKAINFGLIYGMS-----AFGLARQLGISRTEAKTYVDAYFERYPGVRRYM 807

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              + +  E    + + G    L          G+    +   +                
Sbjct: 808 DETRAEAAESGYVETVFGRRLYL---------PGIQSSNQIARKAAERTAINAPMQGTAA 858

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                   ++   DV       N  ++  +R R           
Sbjct: 859 DII---------------------KMAMVDVD------NWLSNSSLRAR----------- 880

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
                      M           + VHDE+V E  +    ++       M    +    +
Sbjct: 881 -----------MI----------MQVHDELVFEVHEDDVAALTEGVRFRMQHCAN--LDV 917

Query: 662 PLKAEGYEAKRY 673
           PL  +      +
Sbjct: 918 PLIVDVDTGASW 929


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 184/659 (27%), Gaps = 132/659 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +      +D E   +    + +  P +L+ +L DET     H++    I  K++   DI
Sbjct: 331 ELLKFGL-YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DI 385

Query: 89  PSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPY 145
             +     T + +       ++++    +   +                F          
Sbjct: 386 AIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQDDVSVYGKGKSFHIPEDGVLDK 445

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       +     +            L+   + E  L L+   +   G   D+D 
Sbjct: 446 HIAS----ILDAIHVVQPQMMTILEAHEQTSLLS--EIELPLALILSEMEYIGIHTDIDT 499

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + +++ +I  E  +L E I +       +      L + LF    + ++  ++    T  
Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L          D IL     S      +  L + +  DGR+        A +TGR S 
Sbjct: 559 DVLEKLQNAHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSS 617

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R    +      ++ AD 
Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRKAFKSTHEDYVILAADY 653

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA I G+    +AF + ED++ TT  K FN   D+V+   R   K +      
Sbjct: 654 SQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNF---- 709

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQ+                                +   
Sbjct: 710 ----------GIVYGISDYGLSQS------------------------------LGITRK 729

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +     GV     ++ +           +  RR            +      
Sbjct: 730 EAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRG----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
                         + + +                   + +Q  + DI+   M    +  
Sbjct: 785 ------------FAERTAM------------------NSPIQGSAADIIKLAMVQFHREV 814

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E P       G  +  +M         +PL  E    K +
Sbjct: 815 QKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKTW 871


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 184/659 (27%), Gaps = 132/659 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +      +D E   +    + +  P +L+ +L DET     H++    I  K++   DI
Sbjct: 331 ELLKFGL-YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DI 385

Query: 89  PSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPY 145
             +     T + +       ++++    +   +                F     D    
Sbjct: 386 AIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQDDVSVYGKGKSFHIPEDDILDK 445

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       +     +            L+   + E  L L+   +   G   D+D 
Sbjct: 446 HIAS----ILDAIHVVQPQMMTILEAHEQTSLLS--EIELPLALILSEMEYIGIHTDIDT 499

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + +++ +I  E  +L E I +       +      L + LF    + ++  ++    T  
Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L          D IL     S      +  L + +  DGR+        A +TGR S 
Sbjct: 559 DVLEKLQNAHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSS 617

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R    +      ++ AD 
Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRKAFKSTHEDYVILAADY 653

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA I G+    +AF + ED++ TT  K FN    +V+   R   K +      
Sbjct: 654 SQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNF---- 709

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQ+                                +   
Sbjct: 710 ----------GIVYGISDYGLSQS------------------------------LGITRK 729

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +     GV     ++ +           +  RR            +      
Sbjct: 730 EAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRG----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
                         + + +                   + +Q  + DI+   M    +  
Sbjct: 785 ------------FAERTAM------------------NSPIQGSAADIIKLAMVQFHREV 814

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E P       G  +  +M         +PL  E    K +
Sbjct: 815 QKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKTW 871


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/663 (15%), Positives = 200/663 (30%), Gaps = 134/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  + + R E +   S  L +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL--VNEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GID+    +    + A          +            +       +  + KG   S
Sbjct: 384 WKGIDVRGVAF-DLLLAAYLLNPAQDAGDIAAV--AKMKQYEAVRSDEAV--YGKGVKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          ++         ++   L+  E+ L  +   +   G  +D
Sbjct: 439 LPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++ + +++ I +       +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQT-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  +++ +          +    R   +P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVRRYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +  S    +PLK + +  
Sbjct: 814 AARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVS---SVPLKVDYHYG 870

Query: 671 KRY 673
             +
Sbjct: 871 PTW 873


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/663 (15%), Positives = 197/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  +   R E +      + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL--VNEHGRFSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++   +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R    P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +       +PLK + +  
Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++   +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R    P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +       +PLK + +  
Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++   +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R    P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +       +PLK + +  
Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  + + R E +   S  L +L DET       S+F+     +  K
Sbjct: 328 HDAPIVGIAL--VNEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 382 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 436

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 437 LPDEPTLAEHLVRKAAAIWALERPSLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVD 496

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 497 TKRLEQMGSELAEQLRAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 555

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQA-LTQTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 615 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 651 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 710

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 711 --------------GVVYGISDYGLAQN------------------------------LN 726

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R   +P +  R     
Sbjct: 727 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 782

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 783 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 811

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +    A  +PLK + +  
Sbjct: 812 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--ALRVPLKVDYHYG 869

Query: 671 KRY 673
             +
Sbjct: 870 PTW 872


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 206/689 (29%), Gaps = 146/689 (21%)

Query: 11  RSPQPLPKVGV----------WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            S   + K+            +    +  I   A+++ ++ V   D  +      DL + 
Sbjct: 300 WSKVDIRKLITLLQDSRNIAFYPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEI 354

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLAL 116
              E      H    + ++     GI+    ++I T+V+A       S   L       L
Sbjct: 355 FEKEEFEFTTHEIK-DFLVKLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLKKYL 412

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  +   GK    +  +   +    D   +   +   LF    K          K+
Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKK 469

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L  L + E  L  + + +   G+ +D +++ +L + I     ++ + I K       +  
Sbjct: 470 L--LLEIEMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVN 526

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L  +LF    + ++  ++    T   +L            I+     +      ++
Sbjct: 527 SPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYID 586

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
                +  + R+    +    + TGR S      QN+P                      
Sbjct: 587 GFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIP---------------------- 623

Query: 354 ADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                     +R   I    +G  +V AD + IE RVLA ++G++  I++F N EDI++ 
Sbjct: 624 --IREEFGRQIRRAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLR 680

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T A+ F  P++KV+ E R   K +   +                G+     S        
Sbjct: 681 TAAEVFKVPMEKVTPEMRRAAKAVNFGII--------------YGISDYGLS-------- 718

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                    K+     +     +  +++GV +  + +       
Sbjct: 719 ----------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKEN 756

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                 ++                          RR    ++        T  SQ  R  
Sbjct: 757 GYVTTIMN--------------------------RRRYIPEINSRNF---TQRSQAERLA 787

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG 645
                     +Q  + DI+   M    +          ++L VHDE+V +T       V 
Sbjct: 788 MNAP------IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVK 841

Query: 646 TL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +    M         +PL  E      +
Sbjct: 842 KILKENMENVIK--LKVPLVVEIGIGPNW 868


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 186/654 (28%), Gaps = 134/654 (20%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D   +   D+    +MP +++  + DE +  +  N   + I   +  GI +    +   S
Sbjct: 368 DPYKIYYMDKELAESMPKEIVDLIEDEDIEKIGCNIKSDYINL-RPYGIRLGKIGF-DIS 425

Query: 98  VLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRA 150
           +        +S        A   +       +   GK             D   +     
Sbjct: 426 IAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGIM 485

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           N +           +D +  + L+       D E  L  +   +   G  +D   + +L 
Sbjct: 486 NTLSGVVPKMRQIIKDDDMEKLLY-------DVEIPLIEVLGDMEYIGIHVDKKTLDELG 538

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
            L     K L+  I  ++     +      L + LF    + ++  ++    T   +L  
Sbjct: 539 VLFNDRIKYLETKIYDISGEKF-NINSPKQLGLILFEKLELPVIKKTKTGYSTNAEVLEK 597

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                   D+I +           +  ++  ++  DGR+  +     A+ TGR S     
Sbjct: 598 LRDKHPIIDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIAT-TGRISSTDPN 656

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +A  G KLV AD + +E 
Sbjct: 657 MQNIP------------------------VRTDLGRQLRRVFVAGQGSKLVDADYSQVEL 692

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA ++G++  I+AF  G DI+  T ++ F  P D+VS E R+  K +   +       
Sbjct: 693 RVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGII------ 746

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                         A    +     +  
Sbjct: 747 --------------------------------------YGKSDFGLAKDLDISIAKAKEY 768

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + + A+   +      +                                         R
Sbjct: 769 IENYFARFPKIKGFMDHIVSDAEEKGYSTTIF--------------------------GR 802

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R    ++K           +               +Q  + DI+   M N          
Sbjct: 803 RRYIPEIKSSNFVEKNRGIRA---------AMNAPIQGSAADIIKIAMVNVHNRLEEEGL 853

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +++L VHDE++ E+P      V   L   M    +    + L  +      +
Sbjct: 854 KSNLILQVHDELIVESPIEEVERVRVLLKEEMENAVN--LKVNLDVDLNVGDSW 905


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/666 (13%), Positives = 182/666 (27%), Gaps = 148/666 (22%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              A   +D+       +    +  +  L   L DE +     N  F+     +    LG
Sbjct: 343 VGFALKINDQ----IYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I +  + +    + +      ++  +     +           K  I  + KG  +  P 
Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDIEIYGKGKSEHVP- 448

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGY 199
                +  + +              + L ++L            E     +   +   G 
Sbjct: 449 ----DDDEELFNHLASKVNAIENLKQPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGM 504

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
           +++   +L+LQ   A   K+L++ I +   G   +      L   LF    + ++  ++ 
Sbjct: 505 KVEASTLLELQNEFAVRLKELEDKIYQQA-GERFNLNSPKQLGHILFEKLNLPVIKKTKT 563

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L            IL+    +      +  L + +  DGR+         + 
Sbjct: 564 GYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   +       
Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPTEPDGY 658

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           +   D + +E RVLA ++G+    +AF  G DI+  T  + F+    D+V+   R   K 
Sbjct: 659 IFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKA 718

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y               L                                     
Sbjct: 719 VNFGIVY-----GISDYGLSKNL------------------------------------- 736

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +     +     +  ++  + +      +           +                
Sbjct: 737 --GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH--------------- 779

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+        T  S   R          + +Q  + DI+   M
Sbjct: 780 -----------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAM 819

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
            N  K          +V+ VHDE++ + P     ++  +   +M         +PL A+ 
Sbjct: 820 INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADS 877

Query: 668 YEAKRY 673
                +
Sbjct: 878 GWGHNW 883


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/652 (14%), Positives = 185/652 (28%), Gaps = 133/652 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           +   A + D    +     E +A    L ++L D + +    +S   +   K+  GI + 
Sbjct: 331 LLGMALS-DGTKTQYIPF-EIAAKSDILRRWLEDSSKIKYMSDSKASKAALKRA-GIQLA 387

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPY 145
              +    + +  N    S  +       L +      +   GK            + P 
Sbjct: 388 GVDF-DLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAKR--------AVPE 438

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A HV          +  +EA  +  ++     + E  L  +   +   G  ++   
Sbjct: 439 IDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVNRAT 498

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + K+ + +  +   L+++I     G   +      L + LF   G+ ++  ++    T  
Sbjct: 499 LEKMGQELNDKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAA 557

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L          + IL            +  L + +        T      + TGR S 
Sbjct: 558 DVLEKLKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSS 617

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +       L  AD 
Sbjct: 618 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSKEDWILFSADY 653

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++ +   ++AF  G D++  T    F+   ++V    R   K +   +  
Sbjct: 654 SQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIV- 712

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN+                               +   
Sbjct: 713 -------------YGISDYGLSQNLD------------------------------ITRK 729

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 + + A   GV Q   D+ +           ++                      
Sbjct: 730 EAATFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILN---------------------- 767

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               RR    D+      L +   +               +Q  + DI+ + M +     
Sbjct: 768 ----RRRYLPDITSSNFNLRSFAERT---------AMNTPIQGSAADIIKKAMIDMDARL 814

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                   ++L VHDE++ E P      +  +   +M         +PLK +
Sbjct: 815 KKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENAIE--LSVPLKVD 864


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/667 (13%), Positives = 181/667 (27%), Gaps = 150/667 (22%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              A   +         +    +  +  L   L DE +     N  F+     +    LG
Sbjct: 343 VGFALKIN----YQIYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I +  + +    + +      ++  +     +           K  I  + KG  +  P 
Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDIEIYGKGKSEHVP- 448

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGY 199
                +  + +              + L ++L            E     +   +   G 
Sbjct: 449 ----DDDEELFNHLASKVNAIENLKQPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGM 504

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
           +++   +L+LQ   A   K+L++ I +   G   +      L   LF    + ++  ++ 
Sbjct: 505 KVEASTLLELQNEFAVRLKELEDKIYQQA-GERFNLNSPKQLGHILFEKLNLPVIKKTKT 563

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L            IL+    +      +  L + +  DGR+         + 
Sbjct: 564 GYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGK 374
           TGR S      QN+P                                +R   +    +G 
Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPTNPDGY 658

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
                D + +E RVLA ++G+    +AF  G DI+  T  + F+    D+V+   R   K
Sbjct: 659 IF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAK 717

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +   + Y               L                                    
Sbjct: 718 AVNFGIVY-----GISDYGLSKNL------------------------------------ 736

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  + +      +           +               
Sbjct: 737 ---GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH-------------- 779

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+        T  S   R          + +Q  + DI+   
Sbjct: 780 ------------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIA 818

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M N  K          +V+ VHDE++ + P     ++  +   +M         +PL A+
Sbjct: 819 MINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIAD 876

Query: 667 GYEAKRY 673
                 +
Sbjct: 877 SGWGHNW 883


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  + + R E +   S  L +L DET       S+F+     +  K
Sbjct: 328 HDAPIVGIAL--VNEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 382 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 436

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 437 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVD 496

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 497 TKRLEQMGSELAEQLRAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 555

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQA-LTQTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 615 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 651 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 710

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 711 --------------GIVYGISDYGLAQN------------------------------LN 726

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R   +P +  R     
Sbjct: 727 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 782

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 783 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 811

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +    A  +PLK + +  
Sbjct: 812 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--ALRVPLKVDYHYG 869

Query: 671 KRY 673
             +
Sbjct: 870 PTW 872


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 184/659 (27%), Gaps = 138/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
                  +    +   E +       +++  +    V     ++     +    LG  + 
Sbjct: 333 IGLTIHSDKGTYFFAKETAENSPAFKEWIESDASKVV-----YDAKKAMIAMHRLGYAVS 387

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPY 145
              +    + +       S+ +     +  +++E    +   GK         + +    
Sbjct: 388 GITF-DIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKR----STPEESVV 442

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A    A  +  +    D+E   +L      + D E  L  +   +  +G  +D   
Sbjct: 443 APHLARKAVAIAILEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKR 498

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  ++  +A   K L+E I  L +    +      L + LF   G+  V  ++    T  
Sbjct: 499 LEDMKVELAGRLKTLEESIHSLAEEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAA 557

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D IL            +  L +    +     T      ++TGR S 
Sbjct: 558 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 617

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                                +R   + S  G K+  AD 
Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSQPGWKIFSADY 653

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA I+ ++  I AF +  DI+  T    F+   ++V    R   K +      
Sbjct: 654 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF---- 709

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 710 ----------GIVYGISDYGLSQN------------------------------LGITRK 729

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +   +  V +  +D+             +  RR            +      
Sbjct: 730 DAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSDRL 814

Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              K    ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 815 KSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/663 (15%), Positives = 197/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  +   R E +      + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL--VNEHGRFSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++   +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  + + +          +    R    P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +       +PLK + +  
Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/670 (14%), Positives = 183/670 (27%), Gaps = 144/670 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ-----YLRDETVMCVAHNSLFERILF 80
           +     A  D                 +P           L D  V    H    +  + 
Sbjct: 344 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 399

Query: 81  KKTLG---IDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIA 133
              LG   + +         +L+          +L +     L                 
Sbjct: 400 SLLLGGMKLTLQGAH-DDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 458

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
              + S +                    + + +      L +      D E  L  +   
Sbjct: 459 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR------DMELPLLPILAR 512

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G ++D  +   L   +  E +   + I  L      +      L   L+    + +
Sbjct: 513 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQLAQVLYEKLQLPI 571

Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T + +L            IL   + S      L+TL   V+ DGR+  T  
Sbjct: 572 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAKDGRIHTTYH 631

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR S      QN+P                                +R   +A
Sbjct: 632 QA-ATATGRLSSSDPNLQNIP------------------------VRTELGREIRRAFVA 666

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G +LV AD + +E R+LA IA +   + AF + EDI+  T A+ F    DKV ++QR 
Sbjct: 667 EAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRR 726

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           + K +                    GL     S  +                        
Sbjct: 727 VAKTVNF--------------GIAYGLSPHGLSTRLS----------------------- 749

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +       + + +  ++ G+ +  +D  E                        
Sbjct: 750 -------ISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMF------------ 790

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR + +D+      +  A  +               +Q  + D++
Sbjct: 791 --------------GRRRLMADLNSKNRAVAQAAERAA---------INMPIQGTAADLI 827

Query: 611 CEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
            + M    +          ++L VHDE++ E P+     V  L    M+   +    +PL
Sbjct: 828 KKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT--LKVPL 885

Query: 664 KAEGYEAKRY 673
           K +    K +
Sbjct: 886 KVDVGAGKTW 895


>gi|307692866|ref|ZP_07635103.1| DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 185/635 (29%), Gaps = 131/635 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSL 109
            +LQ L    +  V H +       +K L   GI+    R+  T + A           L
Sbjct: 376 QVLQALFAPDIQKVVHGAK----ELEKELMDQGIEPQGIRF-DTELAAYLLSPTDGSYDL 430

Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           +       N      K                +        A       +   Y      
Sbjct: 431 EKLGITYYNQEFAKAKEYLTPGAFDSLFSLDSEGQSAGPMGAFLSHCALIDALYETLSQR 490

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                  +L    + E  L  +   +   G  +D   +    E +AQ  +K    I +L 
Sbjct: 491 LEELKLTQLY--GEIELPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALIYELA 548

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +   T  L   LF   G+  V  ++    T   +L          + IL+    +
Sbjct: 549 GEEF-NINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGKHPIIEAILDYRQLT 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  + L + ++ DGR+  T      + TGR S      QN+P              
Sbjct: 608 KLKSTYADGLGKVIAPDGRIH-TCFQNTVTATGRLSSTEPNLQNIP-------------- 652

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A+ GK LV AD + IE R+LA +AG+   I+ F +G
Sbjct: 653 ----------IRTQLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEGFHSG 702

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI+  T ++ F    D+V+ + R   K +   +                G+     SQ+
Sbjct: 703 ADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIV--------------YGISPFSLSQD 748

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +                               +     +     + A + GV      + 
Sbjct: 749 I------------------------------GVSVQQAKEYMDKYFAHYSGVRAYMDGVV 778

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E                            K+D ++     RR    ++K       +   
Sbjct: 779 EQ--------------------------GKQDGYVATLFGRRRWLPELKSSNFNTRSFGE 812

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDT 639
           ++              +Q  + DI+   M               +VL VHDE++ E P+ 
Sbjct: 813 RV---------ALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECPEA 863

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              +V  L    M         +PL AE +    +
Sbjct: 864 EAETVCRLVKEEMEGVCQ--LSIPLLAETHAGTTW 896


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/666 (13%), Positives = 180/666 (27%), Gaps = 142/666 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82
           A     +   +D+       +    +  +  +   L DE +     N  F+     +   
Sbjct: 340 ADFVGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAH 391

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
            LGI      +    + +      ++  +     +           K  +  + KG  + 
Sbjct: 392 RLGIHTQGLDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDLEVYGKGKSEH 446

Query: 143 PPYDCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            P D     +  A     +     +   +        L      E     +   +   G 
Sbjct: 447 IPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTI--EIPTARVLARMEMNGM 504

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
           +++   +++LQ   A + K+L++ I         +      L   LF   G+ ++  ++ 
Sbjct: 505 KVEASTLIQLQNEFAVKLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPVIKKTKT 563

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L    +       IL+    +      +  L + +  DGR+         + 
Sbjct: 564 GYSTSVEVLDQLKMQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   +       
Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGY 658

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           +   D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K 
Sbjct: 659 IFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKA 718

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y               L                                     
Sbjct: 719 VNFGIVY-----GISDYGLSKNL------------------------------------- 736

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +     +     +  ++  +        +           +                
Sbjct: 737 --GISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMH--------------- 779

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+        T  +   R          + +Q  + DI+   M
Sbjct: 780 -----------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAM 819

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
            N  K          +V+ VHDE++ + P     ++  +   +M         +PL A+ 
Sbjct: 820 INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADS 877

Query: 668 YEAKRY 673
                +
Sbjct: 878 GWGHNW 883


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG+  S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          +R         ++   L   E+ L  +   +   G ++D
Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++   +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G  + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV +  +++ +           +                   
Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMENIVQEAKQKGYVTTLLH------------------ 770

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+      + +   ++              +Q  + DI+ + M + 
Sbjct: 771 --------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +       +PLK + +  
Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVE--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/637 (13%), Positives = 176/637 (27%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  +    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 355 EAFRKWVESDQTKVV-----YDAKKTIVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK         + +        A    A     +    D+
Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDDL 464

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   +L      + D E  L  +   +  +G  +D D +  ++  +    K L+  I  L
Sbjct: 465 EKNEQLAL----MEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    +  V  ++    T   +L   +      D IL     
Sbjct: 521 AGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   ++V    R   K +                    G+     S
Sbjct: 676 HDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 101/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  + + R E +   S  L +L DET       S+F+     +  K
Sbjct: 328 HDAPIVGIAL--VNEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 381

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG   S
Sbjct: 382 WKGIELRGVAF-DLLLAAYLLNPAQDAGDIAAV--AKMKQYEAVRSDEAV--YGKGVKRS 436

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          ++         ++   L+  E+ L  +   +   G  +D
Sbjct: 437 LPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 496

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 497 TKRLEQMGSELAEQLRAIEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 555

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQA-LTQTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 615 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 651 AADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNF 710

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 711 --------------GIVYGISDYGLAQN------------------------------LN 726

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV Q  +++ +          +    R   +P +  R     
Sbjct: 727 ITRKEAAEFIERYFASFPGVKQYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 782

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 783 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 811

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +  +    +PLK + +  
Sbjct: 812 AARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHYG 869

Query: 671 KRY 673
             +
Sbjct: 870 PTW 872


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 101/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A    +E  + + R E +   S  L +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAL--VNEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A          +            +       +  + KG   S
Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDIAAV--AKMKQYEAVRSDEAV--YGKGVKRS 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P + T A H+          ++         ++   L+  E+ L  +   +   G  +D
Sbjct: 439 LPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++   +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          + IL+           +  L + V  D G++         ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQA-LTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA IA +D  I+AF    DI+  T    F+   ++V+   R   K +  
Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNF 712

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +QN                                
Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         + + A   GV Q  +++ +          +    R   +P +  R     
Sbjct: 729 ITRKEAAEFIERYFASFPGVKQYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 784

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+ + M + 
Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813

Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  +    ++L VHDE++ E P      +  L   +M +  +    +PLK + +  
Sbjct: 814 AARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/637 (13%), Positives = 176/637 (27%), Gaps = 138/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
               +++  +    V     ++     +    +G+ I    +    + +       S+ +
Sbjct: 355 EAFRKWVESDQTKVV-----YDAKKTIVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408

Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                +  +++E    +   GK         + +        A    A     +    D+
Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDDL 464

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E   +L      + D E  L  +   +  +G  +D D +  ++  +    K L+  I  L
Sbjct: 465 EKNEQLAL----MEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                 +      L + LF    +  V  ++    T   +L   +      D IL     
Sbjct: 521 AGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L +    +     T      ++TGR S      QN+P             
Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G K+  AD + +E RVLA I+ ++  I AF 
Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +  DI+  T    F+   ++V    R   K +                    G+     S
Sbjct: 676 HDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN                                +     +     +   +  V +  +D
Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             +  RR            +                    + + +NT 
Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637
                             +Q  + DI+ + M          K    ++L VHDE++ E P
Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +     +  +   +M         +PLK +      +
Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/659 (13%), Positives = 178/659 (27%), Gaps = 138/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
                       +   E +   +    ++  +    V     ++     +    +G  I 
Sbjct: 333 IGLTVHSSQGTYFFTKETAEKSAVFRNWVESDETKVV-----YDAKKTMVAMNRIGFAIK 387

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145
              +    + +       S+ +     +  +++E  T     GK         + +    
Sbjct: 388 GVTF-DIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKR----STPEENIV 442

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A    A     +    D     E  ++L  + D E  L  +   +  +G  +D   
Sbjct: 443 AAHLARKAVAIAELEKRLVDD----LEENEQLALMEDLELPLTFVLAQMEMQGVSVDTKR 498

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  ++  +A   K L+E I  L      +      L + LF    +  V  ++    T  
Sbjct: 499 LENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAA 557

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D IL            +  L +    +     T      ++TGR S 
Sbjct: 558 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 617

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G K+  AD 
Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSKPGWKMFSADY 653

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA I+ ++  I AF +  DI+  T    F+   D+V    R   K +      
Sbjct: 654 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF---- 709

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 710 ----------GIVYGISDYGLSQN------------------------------LGITRK 729

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +   +  V +  +D+             +  RR            +      
Sbjct: 730 EAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSERL 814

Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 815 KSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023]
          Length = 552

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 178/659 (27%), Gaps = 138/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
                       +   E +   +    ++  E    V     ++     +    +G  I 
Sbjct: 10  IGLTVHSSQGTYFFTKETAEKSAVFRDWVESEETKVV-----YDAKKTMVAMNRIGFAIK 64

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145
              +    + +       S+ +     +  +++E  T     GK         + +    
Sbjct: 65  GVTF-DIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKR----STPEEDIV 119

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A    A     +    D+E   +L      + D E  L  +   +  +G  +D   
Sbjct: 120 AAHLARKAVAIAELEKRLVDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTQR 175

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  ++  +A   K L+E I  L      +      L + LF    +  V  ++    T  
Sbjct: 176 LGNMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAA 234

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D IL            +  L +    +     T      ++TGR S 
Sbjct: 235 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 294

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G K+  AD 
Sbjct: 295 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSKPGWKMFSADY 330

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA I+ ++  I AF +  DI+  T    F+   D+V    R   K +      
Sbjct: 331 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF---- 386

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 387 ----------GIVYGISDYGLSQN------------------------------LGITRK 406

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +   +  V +  +D+             +  RR            +      
Sbjct: 407 EAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 461

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 462 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSERL 491

Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 492 KSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 548


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 103/679 (15%), Positives = 203/679 (29%), Gaps = 136/679 (20%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
              Q    +  +    +  I   A+++    V   D  +      DL +    E      
Sbjct: 271 TLLQDSRNIAFYPLIYEGEIKKIAFSFGSNTV-YIDIFQ----IEDLKEIFEKEEFEFTT 325

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKME 126
           H    + ++     GI+    ++I T+++A       S   L       L       +  
Sbjct: 326 HEIK-DFLVKLSYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV 383

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
            GK    +  +   +    D   +   +   LF    K          K+L  L + E  
Sbjct: 384 FGKGRDKKKLEEIREDVLADYICS---RCVHLFDLREKLMNFIEEMDMKKL--LLEIEMP 438

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  + +++   G+ +D +++ +L + I     ++ + I K       +      L  +LF
Sbjct: 439 LVEVLKSMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLF 497

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               + ++  ++    T   +L            I+     +      ++     +  + 
Sbjct: 498 EKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDENN 557

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+    +    + TGR S      QN+P                                
Sbjct: 558 RVHSNFKQMV-TATGRISSTEPNLQNIP------------------------IREEFGRQ 592

Query: 364 VRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
           +R   I    +G  +V AD + IE RVLA ++G++  I++F N EDI++ T A+ F  P+
Sbjct: 593 IRRAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPM 651

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           +KV+ E R   K +   +                G+     S                  
Sbjct: 652 EKVTPEMRRAAKAVNFGII--------------YGISDYGLS------------------ 679

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                          K+     +     +  +++GV +  + +             ++  
Sbjct: 680 ------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMN-- 725

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                   RR    ++        T  SQ  R            
Sbjct: 726 ------------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------ 752

Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
           +Q  + DI+   M    +          ++L VHDE+V +T       V  +    M   
Sbjct: 753 IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENMENV 812

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL  E      +
Sbjct: 813 IK--LKVPLVVEIGIGPNW 829


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++        ++ +       ++L D+ +     ++    +  K   GI+
Sbjct: 338 ADIQGFGIQNENG-CYFIP-SDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KGIE 394

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 395 IQGI-YFDLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQD 449

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G  +D + +
Sbjct: 450 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 508

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + + +A   K+++++I +L      +      L + LF    + ++  ++    T   
Sbjct: 509 RSMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 567

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 568 VLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 626

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   I    G  +  AD 
Sbjct: 627 TDPNLQNIP------------------------IRLEEGRKIRQAFIPSKEGWVMYAADY 662

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 663 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 721

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 722 -------------YGISDYGLSQN------------------------------LGITRK 738

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + + A   GV +   ++ +          S    R   +P +  R         
Sbjct: 739 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL----- 791

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 792 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 823

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 824 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 880


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/663 (13%), Positives = 186/663 (28%), Gaps = 137/663 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82
           A     +   +D+       ++   +  +  L   L DE +     N  F+     +   
Sbjct: 340 ADFVGFSLKINDQ----IYVSKDVELLEEDNLKHLLEDEKIKK---NV-FDLKRTTVGLH 391

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
            LGI      +    + +      ++  +     +           K  +  + KG  + 
Sbjct: 392 RLGIHAHGLDY-DMLLASYLVNNENNSNDLGEIAHL----YGDYSVKTDMEVYGKGKSEH 446

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P D    NH+ +     E  K  +    +  ++       E     +   +   G +++
Sbjct: 447 IPDDDILFNHLASKVNAIEKLKEPLLKKLKEHEQDDLFDTIEIPTARVLAKMEMNGMKVE 506

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              +++LQ   A + K+L++ I +   G   +      L   LF   G+ ++  ++    
Sbjct: 507 ASTLIQLQNEFAVKLKELEDKIYEQA-GERFNLNSPKQLGHILFEKLGLPVLKKTKTGYS 565

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L            IL+    +      +  L + +  DGR+         + TGR
Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATGR 624

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +       +  
Sbjct: 625 LSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIFS 660

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
            D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K +  
Sbjct: 661 CDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNF 720

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +  ++  +        +           +                   
Sbjct: 737 ISRKRAKEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMH------------------ 778

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+        T  +   R          + +Q  + DI+   M N 
Sbjct: 779 --------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMINM 821

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          +V+ VHDE++ + P     ++  +   +M         +PL A+    
Sbjct: 822 QKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWG 879

Query: 671 KRY 673
             +
Sbjct: 880 HNW 882


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/660 (16%), Positives = 198/660 (30%), Gaps = 134/660 (20%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            + I        D P  + D    S   S   +   DE ++  + +   + +L  K LGI
Sbjct: 331 HSEIYKLGIKTTDTPTYIID--PDSDFVSKFKEIFEDEEIVKNSFDIKEDVVLLDK-LGI 387

Query: 87  DIPSKRWICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALI--ARFCKGSI 140
           ++    +    ++        S   LK      L++         GK             
Sbjct: 388 NLKL-PYDDMMLMHYLIDPSRSSYDLKVLSQSYLDYEVKSPVDLLGKGKKALKYQDLDFD 446

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           +   Y  +  N ++         K  +E   + +  L    + E  L  +   +   G+ 
Sbjct: 447 ELGNYLASGINAIED-------SKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFV 499

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
            D  ++  L+E I ++  K+ E+I +L      +   T  L   LF    + ++  ++  
Sbjct: 500 TDKKVLEDLKENIDKDIDKITEEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTG 558

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            I             +  L +A+  DGR+R T +   A  T
Sbjct: 559 FSTNAQVLEKLRDKHQIIPKIERYRELFKLRSTYIEGLEKAIDEDGRIRSTFRQNIA-AT 617

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QNLP                                +R    A  GK L+
Sbjct: 618 GRLSSQDPNLQNLP------------------------IKTDEGRLIRKAFRAEEGKILI 653

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA ++G+   I AF  G DI+  T +K F+T +DKV+K QR+  K +  
Sbjct: 654 DADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEAKAVNF 713

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L++                                      
Sbjct: 714 GIIYG-----ISDYGLSQNLNIP------------------------------------- 731

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
                 +     + A +  + +    + E                               
Sbjct: 732 --RKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLFK------------------ 771

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-- 615
                   RR    ++      + +   ++              +Q  + DI+   M   
Sbjct: 772 --------RRRYVPEINSRNFNVRSFGQRV---------ALNTPIQGTAADIIKIAMIET 814

Query: 616 --NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670
             N  K G    IVL +HDEI+ E  ++       +    M         +PL  +    
Sbjct: 815 DKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENATD--LEVPLIVDIDTG 872


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 97/655 (14%), Positives = 199/655 (30%), Gaps = 139/655 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86
           I   A A  +E    + RT+ +        +L DET       S+F+    I+  K  GI
Sbjct: 334 ILGFALA--NEHGHFFIRTDTALSSPLFTAWLEDETKKK----SVFDGKRAIVALKWKGI 387

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSIDS 142
           ++    +    + +       S ++        +       +   GK            +
Sbjct: 388 ELRGIEF-DLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAVYGKGAKQ--------T 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          +++     +  ++    +D E  L  +   +   G ++D
Sbjct: 439 VPEEKALAEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           ++ + ++ E + ++ + ++++I +L      +      L + LF    + ++  ++    
Sbjct: 499 VERLKEMGEELTEQLRAVEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D     T+     ++TGR
Sbjct: 558 TSADVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGR 617

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +       +  
Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSKPDWVIFS 653

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA ++  I AF +  DI+  T    F+   D+V+   R   K +   
Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFG 713

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 714 IV--------------YGISDYGLSQN------------------------------LNI 729

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    + +     GV Q  +++ +          +    R   +P +  R      
Sbjct: 730 PRKEAAEFIRRYFEIFPGVKQYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL-- 785

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                            + + +NT                   +Q  + DI+ + M +  
Sbjct: 786 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLA 814

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 K    ++L VHDE++ E P      +  +   +M         +PL  +
Sbjct: 815 DRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENAIQ--LKVPLLID 867


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 184/662 (27%), Gaps = 147/662 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A I   A A            E+  + SD+  +L       VA    F+       L   
Sbjct: 408 AEIRGMAVATPK-RAYYVRFGERLEL-SDVRPWLV-SDRPKVA----FDLKSMAFALDAH 460

Query: 85  GIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           GI +     W    + A                           G+ L A   +      
Sbjct: 461 GIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARER-------GQELPAW--EEGEREK 511

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
               T +     ++    Y  R  E    L++      + E  L  +   +   G+ ++ 
Sbjct: 512 WLAYTASQLPPLFESLA-YTIRMQEME-RLYQ------EVELPLAFVLAKMEITGFYVNR 563

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + ++   + + +  K++ ++I  L  G   +      L   LF   G+  +  ++    T
Sbjct: 564 EKLVAFGQELTERIKRITQEIYDLA-GTSFNLNSPKQLGEILFDKLGLPALKKTKTGYST 622

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              +L            IL+    +      +  L + +    GR+         + TGR
Sbjct: 623 SADVLEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQT-LTATGR 681

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R     +     +  
Sbjct: 682 LSSSEPNLQNIP------------------------IRLEEGRRLRQVFEPTYKDWVIFA 717

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA ++G++  I AF    DI+  T A  F  P ++V+   R   K +   
Sbjct: 718 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 776

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     +QN+                               +
Sbjct: 777 -------------GIVYGISDFGLAQNL------------------------------NI 793

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +++  K  GV +   ++ +           ++                   
Sbjct: 794 PQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMN------------------- 834

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    D+           S   R            +Q  + D++   M    
Sbjct: 835 -------RRRYLPDIHSRN---YQLRSFAERTAM------NTPIQGSAADLIKLAMVRID 878

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671
           +          ++L VHDE++ E P     ++  L    M    +    +PLK +     
Sbjct: 879 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 936

Query: 672 RY 673
            +
Sbjct: 937 TW 938


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 203/573 (35%), Positives = 276/573 (48%), Gaps = 58/573 (10%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL      
Sbjct: 1   MDWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIG 60

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + 
Sbjct: 61  AVERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLP 120

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +  ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 332 RQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           R   S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWIAGEDWKIKAFANGEDI---------------------------------------- 408
           LAW+AGE  K+ AF + +                                          
Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  ++    
Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +A     W +               AC++ K+AWR  H  +   WK L    
Sbjct: 361 PPLLLQ--EAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583
              ++   +           + M+  +  + + LPS R L Y+  +    G  SY+ T  
Sbjct: 419 TDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F
Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAF 533

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/666 (13%), Positives = 179/666 (26%), Gaps = 142/666 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82
           A     +   +D+       +    +  +  +   L DE +     N  F+     +   
Sbjct: 340 ADFVGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAH 391

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
            LGI      +    + +      ++  +     +           K  +  + KG  + 
Sbjct: 392 RLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDLEVYGKGKSEH 446

Query: 143 PPYDCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            P D     +  A     +     +   +        L      E     +   +   G 
Sbjct: 447 IPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTI--EIPTARVLARMEMNGM 504

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
           +++   +++LQ     + K+L++ I     G   +      L   LF   G+ ++  ++ 
Sbjct: 505 KVEASTLIQLQNEFTVKLKELEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKT 563

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L            IL+    +      +  L + +  DGR+         + 
Sbjct: 564 GYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   +       
Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGY 658

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           +   D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K 
Sbjct: 659 IFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKA 718

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y               L                                     
Sbjct: 719 VNFGIVY-----GISDYGLSKNL------------------------------------- 736

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +     +     +  ++  +        +           +                
Sbjct: 737 --GISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMH--------------- 779

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+        T  +   R          + +Q  + DI+   M
Sbjct: 780 -----------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAM 819

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
            N  K          +V+ VHDE++ + P     ++  +   +M         +PL A+ 
Sbjct: 820 INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADS 877

Query: 668 YEAKRY 673
                +
Sbjct: 878 GWGHNW 883


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++        ++ +       ++L D+ +     ++    +  K   GI+
Sbjct: 331 ADIQGFGIQNENG-CYFIP-SDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KGIE 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 IQGI-YFDLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQD 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G  +D + +
Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + + +A   K+++++I +L      +      L + LF    + ++  ++    T   
Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   I    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFIPSKEGWVMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + + A   GV +   ++ +          S    R   +P +  R         
Sbjct: 732 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 147/698 (21%)

Query: 1   MSKLFID--IETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAM 53
           + +L  D   E        K  ++   E                D      + +      
Sbjct: 296 LKELTFDVLTELTEKHFSGKTALYVELENENYHTGNFIGLTIHSDKG-TYFFTKETAENS 354

Query: 54  PSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           P+   +++  +    V     ++     +    LG  +    +    + +       S+ 
Sbjct: 355 PA-FKEWIESDASKVV-----YDAKKTMVAMHRLGYAVSGITF-DIMLASYLLNPSDSIA 407

Query: 111 N---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +     +  +++E    +   GK         + +        A    A  +  +    D
Sbjct: 408 DFTSVAIRHDYTEVETDEAVYGKGAKR----STPEERVVAPHLARKAVAIAVLEKRLLDD 463

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           +E   +L      + D E  L  +   +  +G  +D   +  ++  +A   K L+E I  
Sbjct: 464 LEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHS 519

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L      +      L + LF   G+  V  ++    T   +L   +      D IL    
Sbjct: 520 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 578

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   +  L +    +     T      ++TGR S      QN+P            
Sbjct: 579 LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------ 626

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   + S  G K+  AD + +E RVLA I+ ++  I AF
Sbjct: 627 ------------IRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAF 674

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T    F+   ++V    R   K +                    G+     
Sbjct: 675 KHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF--------------GIVYGISDYGL 720

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           SQN                                +     +     +   +  V +  +
Sbjct: 721 SQN------------------------------LGITRKDAKDFIDRYFVSYPAVKEYMQ 750

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           D+             +  RR            +                    + + +NT
Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT 793

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSET 636
                              +Q  + DI+ + M          K    ++L VHDE++ E 
Sbjct: 794 ------------------PIQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEA 835

Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           P+     +  +   +M         +PLK +      +
Sbjct: 836 PEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378]
          Length = 552

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 88/635 (13%), Positives = 174/635 (27%), Gaps = 138/635 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN-- 111
              ++  +    V     ++     +    +G  I    +    + +       S+ +  
Sbjct: 34  FRNWVESDETKVV-----YDAKKTMVAMNRIGFAIKGVTF-DIMLASYLLNPSDSIDDFT 87

Query: 112 -ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
              +  +++E    +   GK         + +        A    A     +    D+E 
Sbjct: 88  SVAVRHDYTEVETDEAIYGKGAKR----STPEENIVAAHLARKAVAIAELEKRLVDDLEK 143

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +L      + D E  L  +   +  +G  +D   +  ++  +A   K L+E I  L  
Sbjct: 144 NEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAG 199

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      L + LF    +  V  ++    T   +L   +      D IL       
Sbjct: 200 EEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGK 258

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                +  L +    +     T      ++TGR S      QN+P               
Sbjct: 259 IQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP--------------- 303

Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   +    G K+  AD + +E RVLA I+ ++  I AF + 
Sbjct: 304 ---------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHD 354

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI+  T    F+   D+V    R   K +                    G+     SQN
Sbjct: 355 YDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLSQN 400

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                           +     +     +   +  V +  +D+ 
Sbjct: 401 ------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQDIV 430

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                       +  RR            +                    + + +NT   
Sbjct: 431 RFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT--- 470

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639
                           +Q  + DI+ + M               ++L VHDE++ E P+ 
Sbjct: 471 ---------------PIQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEA 515

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +  +   +M         +PLK +      +
Sbjct: 516 EIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 548


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 103/691 (14%), Positives = 206/691 (29%), Gaps = 146/691 (21%)

Query: 9   ETRSPQPLPKVGV----------WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           E  S   + ++            +    +  I   A+++  + V   D  +      DL 
Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQTE----DLK 352

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACL 114
           +    E      H    + ++     GI+    ++I T+V+A       S   L      
Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLKK 410

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L       +   GK    +  +   ++   D   +   +   LF    K          
Sbjct: 411 YLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICS---RCVYLFDLKEKLMNFIEEMDM 467

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K+L  L + E  L  + +++   G+ +D +++ +L + I     ++ + I K       +
Sbjct: 468 KKL--LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQF-N 524

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L  +LF    + ++  ++    T   +L            I+     +      
Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQLTKLKSTY 584

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++     +  + R+    +    + TGR S      QN+P                    
Sbjct: 585 IDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIP-------------------- 623

Query: 352 TIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       +R   I    +G  +V AD + IE RVLA ++G++  I++F N EDI+
Sbjct: 624 ----IREEFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + T ++ F  P++KV+ E R   K +   +                G+     S      
Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGII--------------YGISDYGLS------ 718

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                      K+     +     +  +++GV    + +     
Sbjct: 719 ------------------------RDLKISRKEAKEYINNYFERYKGVKDYIEKIVRFAK 754

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   ++                          RR    ++        T  SQ  R
Sbjct: 755 ENGYVTTIMN--------------------------RRRYIPEINSRNF---TQRSQAER 785

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M               ++L VHDE+V +T       
Sbjct: 786 LAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDI 839

Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +    M         +PL  E      +
Sbjct: 840 IKKILKENMENVVQ--LKVPLVVEIGVGPNW 868


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/691 (14%), Positives = 207/691 (29%), Gaps = 146/691 (21%)

Query: 9   ETRSPQPLPKVGV----------WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           E  S   + ++            +    +  I   A+++  + V   D  +      DL 
Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQTE----DLK 352

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACL 114
           +    E      H    + ++     GI+    ++I T+V+A       S   L      
Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLKK 410

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L       +   GK    +  +   ++   D   +   +   LF    K          
Sbjct: 411 YLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICS---RCVYLFDLKEKLMNFIEEMDM 467

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           K+L  L + E  L  + +++   G+ +D +++ +L + I     ++ + I K       +
Sbjct: 468 KKL--LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQF-N 524

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L  +LF    + ++  ++    T   +L            I+     +      
Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQLTKLKSTY 584

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++     +  + R+    +    + TGR S      QN+P                    
Sbjct: 585 IDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIP-------------------- 623

Query: 352 TIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       +R   I    +G  +V AD + IE RVLA ++G++  I++F N EDI+
Sbjct: 624 ----IREEFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           + T ++ F  P++KV+ E R   K +   +                G+     S      
Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGII--------------YGISDYGLS------ 718

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                      K+     +     +  +++GV +  + +     
Sbjct: 719 ------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAK 754

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   ++                          RR    ++        T  SQ  R
Sbjct: 755 ENGYVTTIMN--------------------------RRRYIPEINSRNF---TQRSQAER 785

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M               ++L VHDE+V +T       
Sbjct: 786 LAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDI 839

Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +    M         +PL  E      +
Sbjct: 840 IKKILKENMENVVQ--LKVPLVVEIGVGPNW 868


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/635 (13%), Positives = 175/635 (27%), Gaps = 138/635 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN-- 111
             +++       V     ++     +    +G  I    +    + +       S+ +  
Sbjct: 357 FREWVESAQTKVV-----YDAKKTMVAMNRMGFAISGITF-DIMLASYLLNPSDSIDDFT 410

Query: 112 -ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
              +  +++E    +   GK       + SI +           +  +   +        
Sbjct: 411 SVAVRHDYTEVETDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVD-------- 462

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E  ++L  + D E  L  +   +  +G  +D + +  ++  +A   K L+  I  L  
Sbjct: 463 DLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLAG 522

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      L + LF    +  V  ++    T   +L   +      D IL       
Sbjct: 523 EEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHDIIDEILLYRQLGK 581

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                +  L +    +     T      ++TGR S      QN+P               
Sbjct: 582 IQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP--------------- 626

Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   +    G K+  AD + +E RVLA I+ ++  I AF + 
Sbjct: 627 ---------IRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHD 677

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI+  T    F+   ++V    R   K +                    G+     SQN
Sbjct: 678 YDIHTKTAMDVFHVEQEEVDSLMRRQAKAVN--------------FGIVYGISDYGLSQN 723

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                           +     +     +   +  V +   D+ 
Sbjct: 724 ------------------------------LGITRKDAKDFIDRYFVSYPAVKEYMHDIV 753

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                       +  RR            +                    + + +NT   
Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT--- 793

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639
                           +Q  + DI+ + M          +    ++L VHDE++ E P+ 
Sbjct: 794 ---------------PIQGSAADIIKKAMILMSERLESEQLEAKLLLQVHDELIFEAPEA 838

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +  +   +M         +PLK +      +
Sbjct: 839 EIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 188/664 (28%), Gaps = 135/664 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
            QA I   A   +                   +++ +DET      ++    ++      
Sbjct: 327 HQADIAGFALVHEKGR-YFIPTETALR-SDLFVEWAKDETKKKWLLDAKRGVVVLGW-KD 383

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF----CKGSID 141
           + +    +    + +       S  +               +G   I        KG+  
Sbjct: 384 VLLDGVDF-DLLMASYLLDPSHSSHDLS--------DIATRKGAKSIQADEAVYGKGAKR 434

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             P     A H+          K  +E   +  ++     D E  L ++   +   G ++
Sbjct: 435 KVPETDVLAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKV 494

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D+D +  + E +A    +L++ I +   G+  +      L   LF   G+ ++  ++   
Sbjct: 495 DIDQLKAMGEDLASRLAELEKHIHEHA-GVSFNINSPKQLGEVLFEKLGLPVIKKTKTGY 553

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
            T   +L            IL+           +  L +       ++         ++T
Sbjct: 554 STSADVLEKLAEDHEIIRHILHYRQLGKLNSTYIEGLVKVTHKGTSKIHTRFNQA-LTQT 612

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
           GR S      QN+P                                +R   I    G K+
Sbjct: 613 GRLSSTDPNLQNIP------------------------IRLEEGRKIRKAFIPSEEGWKI 648

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE RVLA IA ++  I AF    D++  T    F+   + V+   R   K + 
Sbjct: 649 LAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSAKAVN 708

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             +                G+     SQ+                               
Sbjct: 709 FGIV--------------YGISDYGLSQS------------------------------L 724

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +         + + A +  V +  + + E          S    R   +P L  R   +
Sbjct: 725 GITRKEAAKFIERYLASYPNVAEYMERIIEEARENGYV--STLLNRRRYLPELTSRNFNQ 782

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                              + + +NT                   +Q  + DI+ + M  
Sbjct: 783 ---------------RSFAERTAMNT------------------PIQGTAADIIKKAMVE 809

Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P      +  +   +M      A  +PLK +   
Sbjct: 810 MALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAVELA--VPLKVDISA 867

Query: 670 AKRY 673
              +
Sbjct: 868 GDTW 871


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 182/660 (27%), Gaps = 145/660 (21%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           ++     W       + S L   L +  +  + HN  F   L K+   I +         
Sbjct: 408 NNNDTYQWYLNLTE-VLSILKPILENIKIKKIGHNMKFIFSLLKQH-NIHLSG-PIFDVI 464

Query: 98  VLARTNGLPSSLKNACLALNFSEH------------LTKMEEGKALIARFCKGSIDSPPY 145
           +        S+ +N    LN +                K    K +     + S  +   
Sbjct: 465 LELYVLYGTSNYQNIKRFLNKTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCSTQLI 524

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H   W    ++ +                 + E  L  +   I D G  ID   
Sbjct: 525 YAISNLHQILWTEIKQHNELKKI-----------FINIEIPLISVLSRIEDYGVLIDKKF 573

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTL 261
           +      +  +   L     +LT G   +      L+  L+    + +   +      T 
Sbjct: 574 LYSHSIKLNSQLNNLKTQAYQLT-GSSFNLDSPKQLQEILYNQEKLPIFKKTPHGAPSTS 632

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
           + +L   +       +IL   + S       N L   ++    R+  +      + TGR 
Sbjct: 633 EEVLKKLSKKHSIPKIILKYRSLSKLKSTYTNKLISMINKKSNRIHTSYNQT-RTSTGRL 691

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   IA     ++ AD
Sbjct: 692 SSTNPNLQNIP------------------------NRNYDGRKIRQAFIAPENSLIISAD 727

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ +   I  F   +DI+ TT ++ F T +  V+ EQR   K +   L 
Sbjct: 728 YSQIELRIMAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLI 787

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               L                                        +  
Sbjct: 788 YGMT-----AFGLSKQLS---------------------------------------VTC 803

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +     +  ++ GV+Q  + + +                                 +
Sbjct: 804 QEAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGY--------------------------V 837

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617
                R+L   D+               R            +Q  + DI+   M +    
Sbjct: 838 STLDGRKLYLPDIYSSNISQK---KGAERSAINAP------MQGSAADIIKRAMISIDSW 888

Query: 618 ---TKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +++ VHDE+V E  +T    +V  +  LM +   +   +PLK +    K +
Sbjct: 889 LQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQIRKLMEEC--FILNVPLKVDIGVGKNW 946


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       D+        T+ +      +++L+DE +     ++    +  K   G++
Sbjct: 331 ADIQGFGIQNDNG-CYFIP-TDIALASEAFIKWLKDEEMRKYTFDAKRAIVALKW-KGVE 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 IRGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPAQE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++     + E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + + +A   K+++++I +L      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVVLFEKLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V     ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPKILHYRQLGKLNSTYIEGLLKVVHDESSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                                +R   I S  G  +  AD 
Sbjct: 620 TEPNLQNIP------------------------IRLEEGRKIRQAFIPSQEGWVMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   I+AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + + A   GV +   ++ +          S    R   +P +  R         
Sbjct: 732 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFN------ 783

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 784 ---------VRSFAERTAMNT------------------PIQGSAADIIKKAMIVMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/652 (15%), Positives = 190/652 (29%), Gaps = 146/652 (22%)

Query: 38  DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           ++    + D      + +    + L  ++ D+TV  V H+S        K   IDI    
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY-DIDIQGFD 404

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +  T++ A       +                  E   LI RF          DC     
Sbjct: 405 F-DTAIAAYLIDSSKA----------------NYEVFDLINRFL---EKDIKSDCDDLKA 444

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +  L   Y K      +E    L      E  L  +  ++   G++I+ D + +L+  
Sbjct: 445 ICSSYLTKLYEKLKERLHKEDMDELY--YKVEHPLIYVLSSMESIGFKINKDKLEELRIK 502

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
             ++ +K +++I +L D    +      L   LF    + ++  ++    T + +L    
Sbjct: 503 FKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   ++     +      +  L   +  DG +         + TGR S      QN
Sbjct: 562 DKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTV-TTTGRLSSTEPNLQN 620

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARV 388
           +P                                +R   I  +    L+  D + IE RV
Sbjct: 621 IP------------------------IKYEMGKEIRKVFIPQDSDDILISCDYSQIELRV 656

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA +A +   I AF +  DI+  T ++ F  P+D+V+   R+  K +   + Y       
Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYG-----I 711

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              +    L + +          FE + + + +  ++ +   E      ++         
Sbjct: 712 SDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNR------- 764

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             R     +    K +                                            
Sbjct: 765 --RRFIPEIKSSNKIV-------------------------------------------- 778

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                 G+   +N                     Q  + DI+   M N            
Sbjct: 779 ---KALGERLAMNAPI------------------QGSAADIIKLAMVNVYNKLREKNLNS 817

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +++L VHDE++       +  V  L    M K       + L  +      +
Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/652 (15%), Positives = 189/652 (28%), Gaps = 146/652 (22%)

Query: 38  DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           ++    + D      + +    + L  ++ DETV  V H+S        K   IDI    
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +  T++ A       +                  E   LI RF          D      
Sbjct: 405 F-DTAIAAYLIDSSKA----------------NYEVFDLINRFL---EKDIKSDSNDLKA 444

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +  L   Y K      +E    L      E  L  +  ++   G++I+ D + +L+  
Sbjct: 445 ICSSYLKKLYEKLKEMLHKEDMDELY--YKVEHPLIYVLSSMESIGFKINQDKLEELRVK 502

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
             ++ +K +++I +L D    +      L   LF    + ++  ++    T + +L    
Sbjct: 503 FKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   ++     +      +  L   +  DG +         + TGR S      QN
Sbjct: 562 DKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTV-TTTGRLSSTEPNLQN 620

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARV 388
           +P                                +R   I  +    L+  D + IE RV
Sbjct: 621 IP------------------------IKYEMGKEIRKVFIPQDSDDILISCDYSQIELRV 656

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA +A +   I AF +  DI+  T ++ F  P+D+V+   R+  K +   + Y       
Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYG-----I 711

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              +    L + +          FE + + + +  ++ +   E      ++         
Sbjct: 712 SDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNR------- 764

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             R     +    K +                                            
Sbjct: 765 --RRFIPEIKSSNKIV-------------------------------------------- 778

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                 G+   +N                     Q  + DI+   M N            
Sbjct: 779 ---KALGERLAMNAPI------------------QGSAADIIKLAMVNVYNKLREKNLNS 817

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +++L VHDE++       +  V  L    M K       + L  +      +
Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/652 (15%), Positives = 189/652 (28%), Gaps = 146/652 (22%)

Query: 38  DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           ++    + D      + +    + L  ++ DETV  V H+S        K   IDI    
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +  T++ A       +                  E   LI RF          D      
Sbjct: 405 F-DTAIAAYLIDSSKA----------------NYEVFDLINRFL---EKDIKSDSNDLKA 444

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +  L   Y K      +E    L      E  L  +  ++   G++I+ D + +L+  
Sbjct: 445 ICSSYLKKLYEKLKEMLHKEDMDELY--YKVEHPLIYVLSSMESIGFKINKDKLEELRVK 502

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
             ++ +K +++I +L D    +      L   LF    + ++  ++    T + +L    
Sbjct: 503 FKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   ++     +      +  L   +  DG +         + TGR S      QN
Sbjct: 562 DKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTV-TTTGRLSSTEPNLQN 620

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARV 388
           +P                                +R   I  +    L+  D + IE RV
Sbjct: 621 IP------------------------IKYEMGKEIRKVFIPQDSDDILISCDYSQIELRV 656

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA +A +   I AF +  DI+  T ++ F  P+D+V+   R+  K +   + Y       
Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYG-----I 711

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
              +    L + +          FE + + + +  ++ +   E      ++         
Sbjct: 712 SDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNR------- 764

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             R     +    K +                                            
Sbjct: 765 --RRFIPEIKSSNKIV-------------------------------------------- 778

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                 G+   +N                     Q  + DI+   M N            
Sbjct: 779 ---KALGERLAMNAPI------------------QGSAADIIKLAMVNVYNKLREKNLNS 817

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +++L VHDE++       +  V  L    M K       + L  +      +
Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/674 (13%), Positives = 185/674 (27%), Gaps = 134/674 (19%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75
           +  +G         +     + D   +              +   L +  +    ++   
Sbjct: 323 IDVIGKEGNILDKRVLYVFLSLDGNEIYYV----NEDELPQIKTLLSNPEIKKHGYDLKE 378

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKA 130
           +  +  K   I++ S  +  T +        SS    C       L       +   GK 
Sbjct: 379 DY-ILLKPYEIELNSMDFDIT-IAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKG 436

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
             A+                       ++ +  ++  E   +           E  L  +
Sbjct: 437 AKAKKFDEIEFDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFY-----HVEMPLVEV 491

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
             ++   G ++D D + +L+E       +L+ +I +L      +      L + LF   G
Sbjct: 492 LGSMEYIGMKVDKDQLNELKEKFTTIINELENEIFELAGEPF-NINSPKQLGVVLFEKLG 550

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
           + ++  ++    T   +L          D I             +  L + ++   GR+ 
Sbjct: 551 LPVIKKTKTGYSTNAEVLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIH 610

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            +      + TGR S      QN+P                                +R 
Sbjct: 611 SSFNQT-ITTTGRISSTEPNMQNIP------------------------VKTEMGRDIRK 645

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +A    KLV AD + +E RVLA ++G++  I AF +GEDI+  T ++ F+  I  V+ 
Sbjct: 646 VFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTS 705

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +QR   K +   +                                               
Sbjct: 706 KQRIEAKAINFGII--------------------------------------------YG 721

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 +    +     +    ++  K+  + +   +  E           ++       
Sbjct: 722 KTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEFMDEAVESATETGYATTILN------- 774

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RR    ++K     +     +               +Q  +
Sbjct: 775 -------------------RRRYIPEIKASNFIVRNQGKRF---------AMNAPIQGSA 806

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
            DI+   M N             ++L VHDE++ E  D        +    M    S   
Sbjct: 807 ADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEMENAQS--M 864

Query: 660 GLPLKAEGYEAKRY 673
            + L  +      +
Sbjct: 865 DVKLDVDLNTGDSW 878


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 160/580 (27%), Gaps = 125/580 (21%)

Query: 91  KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            R+    V A                   L       K   GK L         +    D
Sbjct: 416 GRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGK-LDFTQMMKEDEKKAVD 474

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           C       AW+      ++  E        L    D E  L  +   + + G R D   +
Sbjct: 475 CACYEVYTAWKSKPVLLQKLKEMNM-----LTLYRDIELPLVFVLYDMENEGIRADGIKL 529

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +  + +A    +L++ I +       +      L + LF   G+     ++    T   
Sbjct: 530 KEYGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTKTGYSTAAD 588

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +       + LS  ++SDG++  TL     + TGR S  
Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQT-ITATGRLSST 647

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +   G   V +D + 
Sbjct: 648 EPNLQNIP------------------------IRIELGKLIRKVFLPEEGDLFVDSDYSQ 683

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++G++  I+AF NG+DI+ +T +  F+TP D+V+  QR   K +   + Y  
Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYG- 742

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +        S F  + + +           +      + G   
Sbjct: 743 ----ISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIR 798

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +        +                                     
Sbjct: 799 PI---------PELNSSNFMQRQ------------------------------------- 812

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                      G+   +N+                       + DI+   M         
Sbjct: 813 ----------FGERVAMNSPIQG------------------TAADIIKIAMIRVHDRLLD 844

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656
                 ++L VHDE++ ET +     V   L   M     
Sbjct: 845 EGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAVD 884


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/662 (13%), Positives = 187/662 (28%), Gaps = 133/662 (20%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
              I   +    +     +   E +       ++  DE +    +++    +  ++  G+
Sbjct: 328 NGEIVGISMR--NGSGNYFFTLETALASDAFKKWAADEKMKKSVYDAKRSIVALRRQ-GV 384

Query: 87  DIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDS 142
           ++    +    +++       S  +          S     +   GK    +  +    +
Sbjct: 385 ELTGVEF-DLLIVSYILNPAESADDFAGVAKKHGASVIESDEAVYGKGAKRKVPEEEKLA 443

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                      +      E  K + +            +D E  L ++   +   G  +D
Sbjct: 444 EHLARKANVVYELKSTCEEALKENDQYQL--------FTDLELPLAIILADMEYTGVGVD 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +D + +++  +A+   ++++ I +L      +      L + LF    + ++  ++    
Sbjct: 496 VDRLKEMKSELAERLDEMEKKIYELAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYS 554

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          D IL+           +  L + +  D     T      ++TGR
Sbjct: 555 TSADVLEKLQSKHEIIDHILHYRQLGKLQSTYIEGLLKVIHEDSNKVHTRFNQALTQTGR 614

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378
            S      QN+P                                +R   I S     +  
Sbjct: 615 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFIPSEKNWLMFA 650

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IAG++  I AF  G DI+  T    F+   D V+   R   K +   
Sbjct: 651 ADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFG 710

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQ+                                +
Sbjct: 711 IV--------------YGISDFGLSQS------------------------------LGI 726

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    + +   + GV +   D+             +  RR                
Sbjct: 727 TRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQNGFVKTLLQRRRYIPEITSRNFNL---- 782

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 783 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDMA 811

Query: 616 -NATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               K      ++L VHDE++ E P+     +  +   +M         +PLK +     
Sbjct: 812 ARLEKENLQTRLLLQVHDELIFEAPEDEIERLKEIVPEVMENAVE--LEVPLKVDYSYGP 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/663 (13%), Positives = 179/663 (26%), Gaps = 142/663 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              +   +D+       +    +  +  +   L DE +     N  F+     +    LG
Sbjct: 342 VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLG 393

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I      +    + +      ++  +     +           K  +  + KG  +  P 
Sbjct: 394 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDLEVYGKGKSEHIPD 448

Query: 146 DCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           D     +  A     +     +   +        L      E     +   +   G +++
Sbjct: 449 DDDELFNHLASKVNAIEKLKRELLKKLKEHEQDALFDTI--EIPTACVLARMEMNGMKVE 506

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              +++LQ   A + K+L++ I     G   +      L   LF   G+ ++  ++    
Sbjct: 507 ASTLIQLQNEFAVKLKELEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 565

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L            IL+    +      +  L + +  DGR+         + TGR
Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATGR 624

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +       +  
Sbjct: 625 LSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIFS 660

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
            D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K +  
Sbjct: 661 CDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNF 720

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +  ++  +        +           +                   
Sbjct: 737 ISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMH------------------ 778

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+        T  +   R          + +Q  + DI+   M N 
Sbjct: 779 --------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMINM 821

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          +V+ VHDE++ + P     ++  +   +M         +PL A+    
Sbjct: 822 QKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWG 879

Query: 671 KRY 673
             +
Sbjct: 880 HNW 882


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++        ++ +       ++L D+ +     ++    +  K   GI+
Sbjct: 331 ADIQGFGIQNENG-CYFIP-SDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KGIE 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 IQGIDF-DLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQD 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G  +D + +
Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + + +A   K+++++I +L      +      L + LF    + ++  ++    T   
Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   I    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFIPSKEGWVMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + + A   GV +   ++ +          S    R   +P +  R         
Sbjct: 732 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/668 (13%), Positives = 186/668 (27%), Gaps = 146/668 (21%)

Query: 28  AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81
           A     +   +D  + +    D  E+  +       L DE +     N  F+     +  
Sbjct: 340 ADFVGFSLKIND-KIYVSRDVDLLEEDNI----KHILEDEKIKK---NV-FDLKRSMVGA 390

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCK 137
             LGI      +    + +      ++  +         ++S        GK        
Sbjct: 391 HRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPD 449

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +   +  ++ N +++ +       +D E        L      E     +   +   
Sbjct: 450 DDDELFNHLASKVNAIESLKKTLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMN 502

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G +++   +++LQ   A + KKL++ I     G   +      L   LF   G+ ++  +
Sbjct: 503 GMKVETSTLIQLQNEFAVKLKKLEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKT 561

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            IL+    +      +  L + +  DGR+         
Sbjct: 562 KTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-L 620

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNG 373
           + TGR S      QN+P                                +R   +     
Sbjct: 621 TATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPD 656

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIG 432
             +   D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   
Sbjct: 657 GYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHA 716

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +                    G+     S+N                           
Sbjct: 717 KAVNF--------------GIVYGISDYGLSKN--------------------------- 735

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +     +     +  ++  +        +           +              
Sbjct: 736 ---LGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMH------------- 779

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR    D+        T  +   R          + +Q  + DI+  
Sbjct: 780 -------------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKI 817

Query: 613 GMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665
            M N  K          +V+ VHDE++ + P     ++  +   +M         +PL A
Sbjct: 818 AMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIA 875

Query: 666 EGYEAKRY 673
           +      +
Sbjct: 876 DSGWGHNW 883


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 169/705 (23%), Positives = 272/705 (38%), Gaps = 84/705 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60
             LF+D ET S   L + G+  Y          + +    +   D  E    +P  + ++
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEVGQRVPEVITRH 63

Query: 61  LRDETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNA 112
           +R    + VAHN+ F+      + ++  G     ++   +  C++  AR NGLP SL  A
Sbjct: 64  VR-AGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 122

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C AL       K  EG    A++ K    +P  D T A+H + +    +Y   D +A   
Sbjct: 123 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVG 174

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG +
Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +  +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +     
Sbjct: 235 LAVSEVEKIKTYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQAL 347
             L   V   GRL+ +  ++GA   GR +              PR  +        + A 
Sbjct: 294 AILRAHVG--GRLQHSTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 350

Query: 348 NRGETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            R +            +       R    A   G  LV ADL+GIEAR   WIAG+   +
Sbjct: 351 LRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELL 410

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G D Y    A  F    + V+K+QR IGKV  LAL Y GGA  F +MA++ G+ L
Sbjct: 411 EAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHL 470

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                                       + +   WRA      +
Sbjct: 471 PPEQ---------------------------------------VDEIVLNWRAARPAFER 491

Query: 520 LWKDLTEGFACVVQ--EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574
            W          +                  +      R + + LPS R + Y + +   
Sbjct: 492 WWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLHL 551

Query: 575 --GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
             G    +           T   K+   N+ Q ++RD+    + +  +    IV  V+DE
Sbjct: 552 EPGANVPIAIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRVE-QIVHHVYDE 610

Query: 632 IVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + E  +         L   M +  +W  GLPL AEG+   R+RK
Sbjct: 611 ALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/670 (14%), Positives = 183/670 (27%), Gaps = 144/670 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ-----YLRDETVMCVAHNSLFERILF 80
           +     A  D                 +P           L D  V    H    +  + 
Sbjct: 297 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 352

Query: 81  KKTLG---IDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIA 133
              LG   + +         +L+          +L +     L                 
Sbjct: 353 SLLLGGMKLTLQGAH-DDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 411

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
              + S +                    + + +      L +      D E  L  +   
Sbjct: 412 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR------DMELPLLPILAR 465

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G ++D  +   L   +  E +   + I  L      +      L   L+    + +
Sbjct: 466 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQLAQVLYEKLQLPI 524

Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T + +L            IL   + S      L+TL   V+ DGR+  T  
Sbjct: 525 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAKDGRIHTTYH 584

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR S      QN+P                                +R   +A
Sbjct: 585 QA-ATATGRLSSSDPNLQNIP------------------------VRTELGREIRRAFVA 619

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G +LV AD + +E R+LA IA +   + AF + EDI+  T A+ F    DKV ++QR 
Sbjct: 620 EAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRR 679

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           + K +                    GL     S  +                        
Sbjct: 680 VAKTVNF--------------GIAYGLSPHGLSTRLS----------------------- 702

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +       + + +  ++ G+ +  +D  E                        
Sbjct: 703 -------ISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMF------------ 743

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR + +D+      +  A  +               +Q  + D++
Sbjct: 744 --------------GRRRLMADLNSKNRAVAQAAERAA---------INMPIQGTAADLI 780

Query: 611 CEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
            + M    +          ++L VHDE++ E P+     V  L    M+   +    +PL
Sbjct: 781 KKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT--LKVPL 838

Query: 664 KAEGYEAKRY 673
           K +    K +
Sbjct: 839 KVDVGAGKTW 848


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/579 (15%), Positives = 160/579 (27%), Gaps = 125/579 (21%)

Query: 91  KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            R+    V A                   L       K   GK L         +    D
Sbjct: 416 GRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGK-LDFTQMMKEDEKKAVD 474

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           C       AW+      ++  E        L    D E  L  +   + + G R D   +
Sbjct: 475 CACYEVYTAWKSKPVLLQKLKEMDM-----LTLYRDIELPLVFVLYDMENEGIRADGIKL 529

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +  + +A    +L++ I +       +      L + LF   G+     ++    T   
Sbjct: 530 KEYGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTKTGYSTAAD 588

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +       + LS  ++SDG++  TL     + TGR S  
Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQT-ITATGRLSST 647

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +   G   V +D + 
Sbjct: 648 EPNLQNIP------------------------IRIELGKLIRKVFLPEEGDLFVDSDYSQ 683

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++G++  I+AF NG+DI+ +T +  F+TP D+V+  QR   K +   + Y  
Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYG- 742

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +        S F  + + +           +      + G   
Sbjct: 743 ----ISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIR 798

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +        +                                     
Sbjct: 799 PI---------PELNSSNFMQRQ------------------------------------- 812

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                      G+   +N+                       + DI+   M         
Sbjct: 813 ----------FGERVAMNSPIQG------------------TAADIIKIAMIRVHDRLLD 844

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655
                 ++L VHDE++ ET +     V   L   M    
Sbjct: 845 EGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAV 883


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/651 (14%), Positives = 184/651 (28%), Gaps = 133/651 (20%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              A + D    +       +     L ++L D T +    +S   +   K+  GI +  
Sbjct: 332 LGIALS-DGIKTQYIPFDNAAK-SDTLRRWLEDATKIKYMSDSKAAQASLKRA-GIQLAG 388

Query: 91  KRWICTSVLARTNGLPSSLKN---ACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYD 146
             +    + +  N    S  +       L +      +   GK            + P  
Sbjct: 389 VDF-DLLLASYINNPALSGDDIATLARELGYYDVQADEAVYGKGAKR--------AIPDL 439

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              A HV          +  +EA  +  ++     + E  L  +   +   G  ++   +
Sbjct: 440 DQLAQHVSRKAFAVWSLQPKLEALLKDNEQFDLYKNLELPLAGILGEMESEGITVNRATL 499

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            K+ + +  +   ++++I     G   +      L + LF   G+ ++  ++    T   
Sbjct: 500 EKMGQELNDKLVVIEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAAD 558

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          + IL            +  L + +        T      + TGR S  
Sbjct: 559 VLEKLQSEHAIIEHILLYRQLGKLQSTYIEGLLKEIHESNSKVHTRFQQALTATGRLSST 618

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R   +       L  AD +
Sbjct: 619 DPNLQNIP------------------------IRLEEGRKIRQAFVPSKEDWILFSADYS 654

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++ +   ++AF  G D++  T    F+   D+V    R   K +   +   
Sbjct: 655 QIELRVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIV-- 712

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN+                               +    
Sbjct: 713 ------------YGISDYGLSQNLD------------------------------ITRKE 730

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                + + A   GV Q   D+ +           ++                       
Sbjct: 731 AANFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILN----------------------- 767

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---- 618
              RR    D+      L +   +               +Q  + DI+ + M +      
Sbjct: 768 ---RRRYLPDITSSNFNLRSFAERT---------AMNTPIQGSAADIIKKAMIDMDARLK 815

Query: 619 --KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
             K    ++L VHDE++ E P      +  +   +M      A  +PLK +
Sbjct: 816 KEKMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIELA--VPLKVD 864


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/634 (14%), Positives = 175/634 (27%), Gaps = 132/634 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112
           ++   +   TV    +N   +R+LFK+ L I++ +  +    + A       +   L   
Sbjct: 375 EIKAIIESPTVEKRVYNVKAQRVLFKR-LDIELRNATF-DFLLAAYLLDTTDNNAELATL 432

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +    L +   GK    +F   + +          H+             V    +
Sbjct: 433 AQKYDIYLQLDEDIYGKGA--KFSVPTDEGRVL-----MHIAHKADTLNQLIEPVMVQLK 485

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++L    D E  L  +   +   G R+D + + ++ E +  +   +++ I +      
Sbjct: 486 EHEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEEF 545

Query: 233 RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+           T   +L            IL     +    
Sbjct: 546 -NINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEKLADQAPIVAYILQYRQLAKLKS 604

Query: 290 LKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V   D ++         ++TGR S      QN+P                 
Sbjct: 605 TYIDGLLAVVYRQDSKIHTRYLQT-LTQTGRLSSVDPNLQNIP----------------- 646

Query: 349 RGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                      A   +R   +      ++  AD + IE RVLA + G+    +AF N ED
Sbjct: 647 -------MRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDKNLQRAFLNDED 699

Query: 408 IYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           I+  T    F    D  ++  QR   K +   + Y               L         
Sbjct: 700 IHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYG-----ISDFGLSNNL--------- 745

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     +     +  K   V +  ++   
Sbjct: 746 ------------------------------GISRAEAKRFIDTYFEKFPQVHEWMENAKT 775

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            +   + RR    D+        +   +
Sbjct: 776 LAHEQGY--------------------------VETLAKRRRYLPDIHAKNFNRRSFAER 809

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP 640
                          +Q  + DI+   M               ++L VHDE++ E P + 
Sbjct: 810 T---------AMNTPIQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPTSE 860

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              +  +   +M      A  +PLK E      +
Sbjct: 861 IPELEEIVPQVMDSAV--ALDVPLKVESRHGSNW 892


>gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 567

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/659 (14%), Positives = 187/659 (28%), Gaps = 138/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
                  +    +   E +       +++  +    V     ++     +    LG  + 
Sbjct: 25  IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYTVS 79

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPY 145
              +    + +       S+ +     +  +++E    +   GK         + +    
Sbjct: 80  GITF-DIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIV 134

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A    A  +  +    D+E   +L      + D E  L  +   +  +G  +D   
Sbjct: 135 APHLARKAVAIAVLEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKR 190

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  ++  +A   K L+E I  L      +      L + LF   G+  V  ++    T  
Sbjct: 191 LEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAA 249

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D IL            +  L +    +     T      ++TGR S 
Sbjct: 250 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 309

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                                +R   + S  G K+  AD 
Sbjct: 310 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSQPGWKIFSADY 345

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA I+ ++  I AF +  DI+  T    F+   ++V    R   K +      
Sbjct: 346 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF---- 401

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 402 ----------GIVYGISDYGLSQN------------------------------LGITRK 421

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +   +  V +  +D+             +  RR   +P +V R         
Sbjct: 422 DAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYXETILHRRR--YIPEIVSRNFN------ 473

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 474 ---------VRGFAERTAMNT------------------PIQGSAADIIKKAMILMSDRL 506

Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              K    ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 507 KSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 563


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/667 (13%), Positives = 181/667 (27%), Gaps = 144/667 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82
           A     +   +D+       +    +  +  +   L DE +     N  F+     +   
Sbjct: 340 ADFVGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRSMVGAH 391

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKG 138
            LGI      +    + +      ++  +         ++S        GK         
Sbjct: 392 RLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
             +   +  ++ N +++ +       +D E        L      E     +   +   G
Sbjct: 451 DDELFNHLASKINAIESLKKPLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMNG 503

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            ++    +++LQ   A + K+L++ I         +      L   LF   G+ ++  ++
Sbjct: 504 MKVKASTLIQLQNEFAVQLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPVIKKTK 562

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    +      +  L + +  DGR+         +
Sbjct: 563 TGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LT 621

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
            TGR S      QN+P                                +R   +      
Sbjct: 622 ATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDG 657

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
            +   D + +E RVLA ++G+    +AF  G DI+  T  K F+      V+   R   K
Sbjct: 658 YIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAK 717

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     S+N                            
Sbjct: 718 AVNF--------------GIVYGISDYGLSKN---------------------------- 735

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  +        +           +               
Sbjct: 736 --LGISRKRAKEFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMH-------------- 779

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+      + +      R          + +Q  + DI+   
Sbjct: 780 ------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADIIKIA 818

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M N  K          +VL VHDE++ + P     +V  +   +M         +PL A+
Sbjct: 819 MINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQSAVR--LDVPLIAD 876

Query: 667 GYEAKRY 673
                 +
Sbjct: 877 SGWGHNW 883


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/636 (13%), Positives = 182/636 (28%), Gaps = 147/636 (23%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                      + ++  V     ++  +       +GI +    +    + A       +
Sbjct: 374 KAVETAKMLFENSSLSKV----SYDVKVPCSILHRMGIKLLGIEF-DIKIAAYLMDPART 428

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                        + K                     +       +       Y     +
Sbjct: 429 NYEL-------PDIIKEYL------------NIEISEEREDCFIKETLLFSRLYSTLKKK 469

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            +     +L  L + E+ L  +  ++   G+++D D + +++E    E  K+ ++I  L+
Sbjct: 470 ISDSSMDKL--LYEVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKEIYFLS 527

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
           +    +      L   LF    + ++  ++    T   +L   +      + I+     +
Sbjct: 528 EEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIYYRQLT 586

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L   +  DG++         + TGR S      QN+P              
Sbjct: 587 KLYSTYIEGLKGVIEEDGKIHSNFNQTV-TTTGRLSSTEPNLQNIP-------------- 631

Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   I  N    ++ AD + IE RVLA I+G++  I AF N
Sbjct: 632 ----------IKYEMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFIN 681

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             DI+  T ++ FN P+ +V+  QR+  K +   + Y  G       +    L++ +   
Sbjct: 682 HNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIG-----DFSLARNLNIPRKEA 736

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + FE + + + +   +  Q  +      ++           R     +    K +
Sbjct: 737 KSYIDAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNR---------RRFIPEIKSSNKII 787

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                                             G+   +NT  
Sbjct: 788 -----------------------------------------------KALGERFAMNTP- 799

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
                            +Q  + DI+   M N             I+L VHDE+V     
Sbjct: 800 -----------------IQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYK 842

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                V  +    M         +PL+ +      +
Sbjct: 843 DELKDVKDIVKEEMENVFK--LKVPLEVDISIGDNW 876


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/663 (13%), Positives = 192/663 (28%), Gaps = 141/663 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI- 86
           I   +    ++       ++   +  +  L + L D+T+     N  F+    +  +G+ 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLRKMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
             ++ ++       + +      ++  +     +           K  +  + KG   + 
Sbjct: 392 RLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAV 447

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P D     H+ A     E  K  +    +  ++       E  +  +   +   G +++ 
Sbjct: 448 PDDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
            ++ +L    A + ++L+  I +       +      L   LF   G+  +  ++    T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYST 566

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L    +       IL+    +      +  L E +  DGR+         + TGR 
Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDGRIHTRYLQT-LTATGRL 625

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVV 378
           S      QN+P                                +R   +    +G     
Sbjct: 626 SSVDPNLQNIP------------------------TRTNEGKQIRKAFVPSTKDGYIF-S 660

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
            D + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +  
Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   + +  ++  +     D  +           +                   
Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH------------------ 778

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+      + +      R          + +Q  + DI+   M N 
Sbjct: 779 --------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINM 821

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          +VL VHDE++ + P     ++  +   +M         +PL A+    
Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWG 879

Query: 671 KRY 673
             +
Sbjct: 880 HNW 882


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I     + D E +   D    S   S L     +  +    +N   + I  K    I++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391

Query: 90  SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142
              +   ++        SS    C       L+      +   GK +           D 
Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y       V+      E    D+ +   LF  +      E  L  +   +   G ++D
Sbjct: 451 AEYMGQIICTVKETIPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
             ++ +L     +    L+++I +L+     +      L + LF    + ++  ++    
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          D I             +  L   ++ +  R+  +      + TG
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   IA +  KLV 
Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   
Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                                                     A    +
Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +++ AK+  + +      E  +        ++                   
Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    ++K           +               +Q  + DI+   M N  
Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          ++L VHDE++ E  D     V  +    M    +    + L  +     
Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--MDVHLDVDLNVGS 876

Query: 672 RY 673
            +
Sbjct: 877 SW 878


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I     + D E +   D    S   S L     +  +    +N   + I  K    I++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391

Query: 90  SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142
              +   ++        SS    C       L+      +   GK +           D 
Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y       V+      E    D+ +   LF  +      E  L  +   +   G ++D
Sbjct: 451 AEYMGQIICTVKETVPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
             ++ +L     +    L+++I +L+     +      L + LF    + ++  ++    
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          D I             +  L   ++ +  R+  +      + TG
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   IA +  KLV 
Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   
Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                                                     A    +
Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +++ AK+  + +      E  +        ++                   
Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    ++K           +               +Q  + DI+   M N  
Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          ++L VHDE++ E  D     V  +    M    +    + L  +     
Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--MDVHLDVDLNVGS 876

Query: 672 RY 673
            +
Sbjct: 877 SW 878


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 113/661 (17%), Positives = 202/661 (30%), Gaps = 132/661 (19%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            + +   A    D P  + D     A          DE ++  + +   +  +    LGI
Sbjct: 332 HSKVYKLAIKTKDSPAYILD--PDQAFIDSFKDVFEDEKILKNSFDIKEDI-VLLNKLGI 388

Query: 87  DIPSKRWICTSVLARTNGLPSS---LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDS 142
           D+    +    ++        S   LK      L++         GK   +         
Sbjct: 389 DLNL-PFDDLMLMHYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGKGKKSLSYGELDYD 447

Query: 143 PPYDC-TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +      +             +     +L++      D E  L  +   +   G+  
Sbjct: 448 KLSNYLASELNAIEDAKAKLVDMLNEYKMYDLYE------DIEIKLSKVLANMEIVGFVT 501

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D  ++L L+E I ++ +KL  +I +L      +   T  L   LF    + ++  ++   
Sbjct: 502 DRKVLLDLKEDINKDLEKLTSEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTGF 560

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T  S+L            I             +  L +A+  DGR+R T +   A  TG
Sbjct: 561 STDASVLEKLRDKHQIIPKIEKYRELFKLQSTYIEGLEKAIDDDGRIRSTFRQNIA-ATG 619

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QNLP                                +R    A  GK L+ 
Sbjct: 620 RLSSQDPNLQNLP------------------------IKTDEGRLIRKAFKAGQGKILID 655

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA ++G++  I+AF NGEDI+  T +K F+TP+D+V+K QR+  K +   
Sbjct: 656 ADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L++                                       
Sbjct: 716 IIYG-----ISDYGLSQNLNIP-------------------------------------- 732

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +     + A +  +      + E                              D 
Sbjct: 733 -RKEAKAYIDNYMASYPSIKAYMDSIVEKAKE--------------------------DG 765

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
            +    +RR    ++      + +   ++              +Q  + DI+   M    
Sbjct: 766 FVETLFNRRRYVPEINSKNFNVRSFGQRV---------ALNTPIQGTAADIIKIAMIETD 816

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671
            N  K G    IVL +HDEI+ E       S   +    M +  +    +PL  +    +
Sbjct: 817 KNLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAAN--LKVPLIVDIDTGE 874

Query: 672 R 672
            
Sbjct: 875 S 875


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 170/659 (25%), Gaps = 159/659 (24%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
              A              S +  +L  +L D  V+ VA +     +   + LGI+     
Sbjct: 346 IGLARKRGEACAV----TSELIVELKPWLEDAAVVKVACDVKSAVLQLAR-LGIEARGFG 400

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                +                                          D          H
Sbjct: 401 -HDVMIYGFLLD-----------------------------------ADPGGCGLENQAH 424

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202
            +     G   ++  + T EL+++L P            + E  L  +   +   G RID
Sbjct: 425 RRLDLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRID 484

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMS 257
              + +L  L+  +   L  +I  L      +      L   LF    +          +
Sbjct: 485 GAELKRLSVLMESQISGLTAEIHALAGKPF-NISSPQQLGKVLFEDLNLPAPVKYGKGKT 543

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
             T   +L            +L     +      ++ L   +    GRL  +    GA  
Sbjct: 544 ISTAADVLDELAAEHEIVRKVLEYRQLTKLKGTYVDALPALIDPATGRLHTSFNQTGA-A 602

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                +R+  +  +G KL
Sbjct: 603 TGRLSSSNPNLQNIP------------------------IRTSLGREIRAAFVPRDGWKL 638

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +VAD + IE R+LA ++G++  ++AF  GEDI+  T A+    P   V+ E R   K + 
Sbjct: 639 LVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEARRDAKAVN 698

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L + +        + F  +   +        +  +  V  
Sbjct: 699 FGIVYG-----ISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIAEVRKTGVTK 753

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            L G    +           +     +                                 
Sbjct: 754 TLFGRERPI---------PEINGRNPNARGFAERTAVNSPLQGTAADLI----------- 793

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                     +L    +    +                        QA         M  
Sbjct: 794 ----------KLAMVRIDAALAAGGF--------------------QA--------AM-- 813

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674
                   +L VHDE+V E P      V  +    M         +PL  +      +R
Sbjct: 814 --------LLQVHDELVFECPPEELDEVSRMVKREMEGACE--LKVPLVVDVGSGDNWR 862


>gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067]
          Length = 566

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 183/659 (27%), Gaps = 138/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
                  +    +   E +       +++  +    V     ++     +    LG  + 
Sbjct: 24  IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYAVS 78

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPY 145
              +    + +       S+ +     +  +++E    +   GK         + +    
Sbjct: 79  GITF-DIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKR----STPEESVV 133

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A    A  +  +    D+E   +L      + D E  L  +   +  +G  +D   
Sbjct: 134 APHLARKAVAIAVLEKRLLDDLEKNEQLSL----MEDLELPLTFVLAQMEMQGVSVDTKR 189

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  ++  +A   K L+E I  L      +      L + LF   G+  V  ++    T  
Sbjct: 190 LEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAA 248

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D IL            +  L +    +     T      ++TGR S 
Sbjct: 249 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 308

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
                QN+P                                +R   + S  G K+  AD 
Sbjct: 309 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSQPGWKIFSADY 344

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E RVLA I+ ++  I AF +  DI+  T    F+   ++V    R   K +      
Sbjct: 345 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF---- 400

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 401 ----------GIVYGISDYGLSQN------------------------------LGITRK 420

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +   +  V +  +D+             +  RR            +      
Sbjct: 421 DAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 475

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 476 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSDRL 505

Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              K    ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 506 KSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 562


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/669 (13%), Positives = 184/669 (27%), Gaps = 148/669 (22%)

Query: 28  AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81
           A     +   +D  + +    D  E+  +       L DE +     N  F+     +  
Sbjct: 340 ADFVGFSLKIND-KIYVSRDVDLLEEDNI----KHILEDEKIKK---NV-FDLKRSMVGA 390

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCK 137
             LGI      +    + +      ++  +         ++S        GK        
Sbjct: 391 HRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPD 449

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +   +  ++ N +++ +       +D E        L      E     +   +   
Sbjct: 450 DDDELFNHLASKVNAIESLKKTLLEKLKDHE-----QDDLFDTI--EIPTARVLAKMEIN 502

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G +++   +++LQ   A + + L++ I +       +      L   LF   G+ ++  +
Sbjct: 503 GMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEF-NLNSPKQLGHILFEKLGLPVLKKT 561

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            IL+    +      +  L + +  DGR+         
Sbjct: 562 KTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-L 620

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SN 372
           + TGR S      QN+P                                +R   +    +
Sbjct: 621 TATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSDPD 656

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAI 431
           G      D + +E RVLA ++G+    +AF  G DI+  T  K F+    DKV+   R  
Sbjct: 657 GYIF-SCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRH 715

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +   + Y               L                                  
Sbjct: 716 AKAVNFGIVY-----GISDYGLSKNL---------------------------------- 736

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 +     +     +  ++  +        +           +             
Sbjct: 737 -----GISRKQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMH------------ 779

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         RR    D+        T  +   R          + +Q  + DI+ 
Sbjct: 780 --------------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIK 816

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
             M N  K          +V+ VHDE++ + P     ++  +   +M         +PL 
Sbjct: 817 IAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLI 874

Query: 665 AEGYEAKRY 673
           A+      +
Sbjct: 875 ADSGWGHNW 883


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 193/662 (29%), Gaps = 135/662 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143
           +    +    + A       + K+ C      E       +   GK          +   
Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFCTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R  HV          +       ELF  L      E  L  +   +  +G ++D 
Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  + E +A   K+++++I KL      +      L + LF    + ++  ++    T
Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            IL+           +  L + V  D  ++         ++TGR
Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G  +  
Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              A     + +     GV +  +D+ +          +    R   +P +  R      
Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               + G    ++L VHDE++ E P      +  L   +M      A  +PLK +     
Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 885

Query: 672 RY 673
            +
Sbjct: 886 TW 887


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I     + D E +   D    S   S L     +  +    +N   + I  K    I++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391

Query: 90  SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142
              +   ++        SS    C       L+      +   GK +           D 
Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y       V+      E    D+ +   LF  +      E  L  +   +   G ++D
Sbjct: 451 AEYMGQIICTVKETVPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
             ++ +L     +    L+++I +L+     +      L + LF    + ++  ++    
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          D I             +  L   ++ +  R+  +      + TG
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   IA +  KLV 
Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   
Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                                                     A    +
Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +++ AK+  + +      E  +        ++                   
Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    ++K           +               +Q  + DI+   M N  
Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          ++L VHDE++ E  D     V  +    M    +    + L  +     
Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--MDVHLDVDLNVGS 876

Query: 672 RY 673
            +
Sbjct: 877 SW 878


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 103/657 (15%), Positives = 198/657 (30%), Gaps = 136/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A      P  +          +++ +   DE ++  + +   + +L  K LGID     
Sbjct: 336 IAIKTKKSPTYI--AEPDEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGAL-P 391

Query: 93  WICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALI--ARFCKGSIDSPPYD 146
           +    ++        S   +K      L++  +  +   GK                 + 
Sbjct: 392 YDDIMLMHYLIDPSRSSYDMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDKLGNFM 451

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDL 205
            +  N +        Y  +D    +     +     + E +L  +   +   G+  D  +
Sbjct: 452 ASEINAI--------YDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTDRKV 503

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + +L+E I  +  +L ++I +L+     +   T  L   LF    + ++  ++    T  
Sbjct: 504 LEELKEGIDADIDELTQEIYELSGSEF-NINSTKQLGEVLFKDLELPVIKKTKTGFSTDA 562

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           S+L            I             +  L +A+  DGR+R T +   A  TGR S 
Sbjct: 563 SVLEKLRDKHQIIPKIERYRELFKLRSTYIEGLEKAIDYDGRIRSTFRQNIA-ATGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QNLP                                +R    A  GK L+ AD +
Sbjct: 622 QDPNLQNLP------------------------IKTDEGRLIRKAFKAEEGKILIDADYS 657

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA ++G++  I AF N +DI+  T +K F+TP+++V+K QR+  K +   + Y 
Sbjct: 658 QIELRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYG 717

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L+                                       +    
Sbjct: 718 -----ISDYGLSQNLN---------------------------------------ISRKE 733

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     + A +  + +    + E                                    
Sbjct: 734 AKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLFK----------------------- 770

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    ++      + +   ++              +Q  + DI+   M    KN  
Sbjct: 771 ---RRRYVPEINSRNFNVRSFGQRV---------ALNTPIQGTAADIIKIAMIETYKNLK 818

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672
                  I+L +HDEI+ E           +    M    +    +PL  +      
Sbjct: 819 KEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESAAN--LEVPLIVDIDTGDS 873


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 183/662 (27%), Gaps = 147/662 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A I   A A            E+  + SD+  +L       VA    F+       L   
Sbjct: 361 AEIRGMAVATPK-RAYYVRFGERLEL-SDVRPWLVS-DRPKVA----FDLKSMAFALDAH 413

Query: 85  GIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           GI +     W    + A                           G+ L A   +      
Sbjct: 414 GIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARER-------GQELPAW--EEGEREK 464

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
               T +     ++    Y  R  E    L++      + E  L  +   +   G+ ++ 
Sbjct: 465 WLAYTASQLPPLFESLA-YTIRMQEME-RLYQ------EVELPLAFVLAKMEITGFYVNR 516

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + ++   + + +  K++ ++I  L  G   +      L   LF   G+  +  ++    T
Sbjct: 517 EKLVAFGQELTERIKRITQEIYDLA-GTSFNLNSPKQLGEILFDKLGLPALKKTKTGYST 575

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              +L            IL+    +      +  L + +    GR+         + TGR
Sbjct: 576 SADVLEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQT-LTATGR 634

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R     +     +  
Sbjct: 635 LSSSEPNLQNIP------------------------IRLEEGRRLRQVFEPTYKDWVIFA 670

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA ++G++  I AF    DI+  T A  F  P ++V+   R   K +   
Sbjct: 671 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 729

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     +QN                                +
Sbjct: 730 -------------GIVYGISDFGLAQN------------------------------LNI 746

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +++  K  GV +   ++ +           ++                   
Sbjct: 747 PQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMN------------------- 787

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    D+           S   R            +Q  + D++   M    
Sbjct: 788 -------RRRYLPDIHSRN---YQLRSFAERTAM------NTPIQGSAADLIKLAMVRID 831

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671
           +          ++L VHDE++ E P     ++  L    M    +    +PLK +     
Sbjct: 832 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 889

Query: 672 RY 673
            +
Sbjct: 890 TW 891


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/664 (13%), Positives = 184/664 (27%), Gaps = 144/664 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              +   +D+       +    +  +  +   L DE +     N  F+     +    LG
Sbjct: 343 VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLG 394

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141
           I      +    + +      ++  +         ++S        GK           +
Sbjct: 395 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 453

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  ++ N +++ +       +D E        L      E     +   +   G ++
Sbjct: 454 LFNHLASKVNAIESLKKTLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMNGMKV 506

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           +   +++LQ   A + KKL++ I     G   +      L   LF   G+ ++  ++   
Sbjct: 507 EASTLIQLQNEFAVKLKKLEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY 565

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    +      +  L + +  DGR+         + TG
Sbjct: 566 STSVEVLDQLKTQSPIVSKILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATG 624

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 625 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 660

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
             D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K + 
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 720

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     S+N                               
Sbjct: 721 F--------------GIVYGISDYGLSKN------------------------------L 736

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  +        +           +                  
Sbjct: 737 GISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMH----------------- 779

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+        T  +   R          + +Q  + DI+   M N
Sbjct: 780 ---------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMIN 821

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             K          +V+ VHDE++ + P     ++  +   +M         +PL A+   
Sbjct: 822 MQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 879

Query: 670 AKRY 673
              +
Sbjct: 880 GHNW 883


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 95/652 (14%), Positives = 181/652 (27%), Gaps = 131/652 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             I   ++A + E            +   L     D  +    HN   E I      GI 
Sbjct: 350 GGIAAASFALEGESTAYSLDGPPDKILEILKTICEDGNIKKYCHNGK-ETIRLLHRNGIT 408

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +  T + A      SS ++    ++                         P  D 
Sbjct: 409 LRQLAF-DTMIAAYLLNPASSNQDL-EDISLEHLN-----------------AVLPGEDR 449

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                            + ++   +L+ +     + E  L  +   +   G  +D   + 
Sbjct: 450 KLPAQAHCIMEL----AQLLDNKLKLYGQDRLFYEIEIPLAGILAEMEIEGVAVDKKQLE 505

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
            + E + ++ +KL ++I +LT     +      L   LF    + ++  ++    T   +
Sbjct: 506 AMSEELGRQIEKLADEIYRLTGREF-NINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADV 564

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           L        A   IL     +       + L+  ++   G+L  T      + TGR S  
Sbjct: 565 LEELAAAHEAVAKILEYRQMAKLKSTYADGLAALINPETGKLHTTFHQTV-TNTGRLSSS 623

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                            A   +R   I       L+ AD +
Sbjct: 624 DPNLQNIP------------------------IRLEAGRLIRKVFIPGRPENLLLTADYS 659

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I+G+   IKAF NGEDI+  T A+ F    ++V++E R   K +   + Y 
Sbjct: 660 QIELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYG 719

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         + + +        + F  +   + +   +  +  +      L+   
Sbjct: 720 -----LSDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNR- 773

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +    + +               +                      
Sbjct: 774 --------RRYLPDLFSPNRTIRSFGERTAMNTPIQGSAADII----------------- 808

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
               +L   ++  + +                               L   M        
Sbjct: 809 ----KLAMVNIHRELAEHG----------------------------LKAKMI------- 829

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              L VHDE++ + P      +  L    M         +PL  E    + +
Sbjct: 830 ---LQVHDELIFDAPAVEIDQLKDLVKRCMENA--LVLEVPLLVEIKAGRNW 876


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 181/690 (26%), Gaps = 158/690 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA +   + A             +                          L   L    
Sbjct: 443  MQAELAGLSLALAPNDACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPILESGG 502

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121
             + +  N  F  +L  +  GI + +       +++ T         L +     L  +  
Sbjct: 503  HLKIGLNIKFSAVLLAQH-GIVMQNH--DDVELISYTLDAGRGSHDLASLAKRWLGHTTL 559

Query: 122  LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  G                     A    A      Y     + T  L++ L P  
Sbjct: 560  SHGELTGSGRNRL---------------AVDQVAIDRATAYAAEYADMTLRLWQVLKPRL 604

Query: 182  DGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              ER           +      +  RG  ID  ++ +L   +AQ   +L+ +I +L    
Sbjct: 605  VAERMNAVYETLERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEP 664

Query: 232  IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSG 286
            I +      +   +F   G+     ++     T   +L             IL+    S 
Sbjct: 665  I-NVGSPKQIGDIMFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSK 723

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                  + L E V+   R   T     A+ TGR S      QN+P               
Sbjct: 724  LKSTYTDALPEYVNPQTRRVHTTYALAATTTGRLSSNEPNLQNIP--------------- 768

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +R   IA+ G +LV AD + IE R+LA IA      +AF +G 
Sbjct: 769  ---------VRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDGL 819

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            DI+  T ++ F  P+  +  E R   K +   + Y               L + +     
Sbjct: 820  DIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAAA 874

Query: 467  KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 FE +    ++    +D   E      L G  C          +  +         
Sbjct: 875  YIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCH---------YPDIKAPNPSHRA 925

Query: 527  GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                         +   A++ R  M R    +     S+R L                  
Sbjct: 926  FNERAAINARLQGSA--ADIIRRAMVRMDDALAAKKLSARML------------------ 965

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVG 645
                                                         ++ E PD     ++ 
Sbjct: 966  ----------------------------LQVHDE-----------LIFEVPDEEVAATLP 986

Query: 646  TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             +  +M     P+    +PL+ +   A  +
Sbjct: 987  VVQHVMQDAPFPAVLLSVPLQVDARAADNW 1016


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L +  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLANGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D D +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSCKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF N  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 92/641 (14%), Positives = 183/641 (28%), Gaps = 131/641 (20%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--- 105
               +   +   L DE +  + +    + +  K   GID+ +  +   ++          
Sbjct: 351 HGDDILK-IRTILEDEDIEKIGYEMKADYVALK-PYGIDLRNMAF-DIAIAEYVIDSKTS 407

Query: 106 -PSSLKNACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
               + +      +   ++K    GK   A   +                    + G Y 
Sbjct: 408 TSYDIDSISSKYIYKTIMSKEDLLGKGAKALDYRQVDLEKLDQYVSGM---LSTIIGSYP 464

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           K       +    L    D E  L  +   +   G  +D D++  L +   +   K +++
Sbjct: 465 KMKKIIDEDQLSMLF--YDVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKTEKN 522

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L      +      L   LF   G+ ++  ++    T   +L          ++I  
Sbjct: 523 IHELAGQDF-NVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAEVLEKLRDKHEIINMITE 581

Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             +        ++ +   V+  DGR+  +      + TGR S      QN+P        
Sbjct: 582 YRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQT-ITTTGRISSTDPNMQNIP-------- 632

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   IA +   LV AD + +E RVLA ++ +   I
Sbjct: 633 ----------------VRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMI 676

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF +GEDI+  T ++ FN   ++V+ E R+  K +   +                    
Sbjct: 677 EAFNSGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGII------------------- 717

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A    +     +   +++  K++ +  
Sbjct: 718 -------------------------YGKSDFGLAQDLNISQKKAKEYIESYFNKYETIKA 752

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               +              +                          RR    ++K     
Sbjct: 753 FMDHIVSEAEEKGYSTTIFN--------------------------RRRYIPEIKSSNFV 786

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M N             ++L VHDE++
Sbjct: 787 EKNRGKRA---------AMNAPIQGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELI 837

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            E        V  L    M    +   G+ LK +    K +
Sbjct: 838 VEATADELTQVEVLLREEMENAVN--LGVDLKVDLNIGKSW 876


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 200/663 (30%), Gaps = 131/663 (19%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFK 81
           Y + A I    +  + + V +    +      +L+++L D+    + +++   +   +  
Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKNYKNLVRWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
             LGI+I +  +    + +       S+ +    +            K  I  F KG   
Sbjct: 382 HRLGINIENIEF-DVMLASYIIDPSRSIDDVKSVVGLYGQNY----VKDNITVFGKGKKH 436

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             P +     H+ +           +++  E + ++  L D E  L  +   + + G   
Sbjct: 437 HIPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYT 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D++ + +++  I ++   L  +I +   G   +      L + LF    + ++  ++   
Sbjct: 497 DINDLKEMEFEIQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGY 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L          D IL     S      +  L + +S D R+        A +TG
Sbjct: 556 STAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R      S    ++
Sbjct: 615 RLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     SQ+                                
Sbjct: 711 --------------GIVYGISDYGLSQS------------------------------LG 726

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     + A   GV Q   D+ +           +  RR               
Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL--- 783

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+   M   
Sbjct: 784 --------------RSFAERTAMNT------------------PIQGSAADIIKLAMVKF 811

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670
           ++          ++L VHDE++ E P +        +  +M +       +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 102/677 (15%), Positives = 205/677 (30%), Gaps = 136/677 (20%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
            Q    +  +    +  I   A+++ ++ V   D  +      DL +    E      H 
Sbjct: 312 LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIFEKEKFEFTTHE 366

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEG 128
              + ++     GI+    +++ T+++A       S   L       L       +   G
Sbjct: 367 IK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 424

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           K    +  +   +    D   +   +   LF    K          KRL  L + E  L 
Sbjct: 425 KGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKRL--LLEIEMPLV 479

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            + +++   G+ +D +++ +L + I     ++ + I K       +      L  +LF  
Sbjct: 480 EVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEK 538

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             + ++  ++    T   +L          + I+     +      ++     +  + R+
Sbjct: 539 LNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQLTKLKSTYIDGFLPLMDENNRV 598

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
               +    + TGR S      QN+P                                +R
Sbjct: 599 HSNFKQMV-TSTGRISSTEPNLQNIP------------------------IREEFGRQIR 633

Query: 366 SCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
              I    +G  +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++K
Sbjct: 634 RAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEK 692

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+ E R   K +   +                G+     S                    
Sbjct: 693 VTPEMRRAAKAVNFGII--------------YGISDYGLS-------------------- 718

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                        K+     +     +  +++GV +  + +             ++    
Sbjct: 719 ----------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIMN---- 764

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 RR    ++        T  SQ  R            +Q
Sbjct: 765 ----------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQ 793

Query: 604 AISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656
             + DI+   M               ++L VHDE+V +T       V  +    M     
Sbjct: 794 GSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENVVQ 853

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  E      +
Sbjct: 854 --LKVPLVVEIGVGPNW 868


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 92/686 (13%), Positives = 190/686 (27%), Gaps = 141/686 (20%)

Query: 10  TRSPQPLPK----VGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           T     + K    V +  Y E      +   + A +     +           +   + +
Sbjct: 308 TTLDPSILKDEMAVHLELYDEHYHSCDLLGVSLATE-RDTYVIPMDVVER-SEEFRAWCK 365

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNF 118
           D T      +S      F +  G+++    +    + A       +  +         + 
Sbjct: 366 DSTKKKFMSDSKAATAAFLR-FGVELRGVDF-DLMLGAYIVNPSLTYTDMASIVQEYGHN 423

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                +   GK    +  + +I              A  ++        +        L 
Sbjct: 424 DVSTNEQIYGKGAKKKVPEDAILHEHIARK------ARTIWKVRPLIMAKLEDNEQFDLY 477

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E  L  +   +   G  ++ D ++++ + +A + +K++ DI  L      +    
Sbjct: 478 DKL--ELPLATVLGQMESLGVMVNRDQLVEMGKELAHKLEKIESDIHGLAGQEF-NINSP 534

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L + LF   G+  +  ++    T   +L            IL            +  L
Sbjct: 535 KQLGVILFEKLGLPALKKTKTGYSTAADVLEKLEGQHEIISHILMYRQLGKLLSTYIEGL 594

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + +  DG++    Q    + TGR S      QN+P                        
Sbjct: 595 LKEIHEDGKIHTRFQQA-LTTTGRLSSINPNLQNIP------------------------ 629

Query: 356 PLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +    G  +V AD + IE RVLA ++ ++  ++AF +  DI+ TT +
Sbjct: 630 VRLEEGRKIRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTAS 689

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             F+   ++V+ + R   K +   + Y               L                 
Sbjct: 690 DVFHVTEEEVTSDMRRAAKAVNFGIVY-----GISDYGLSQNL----------------- 727

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                  +         + + A   GV     ++          
Sbjct: 728 ----------------------NIPRKEAAAFIERYFASFPGVKSYMTNIVADAKR---- 761

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                 D  +    +RR    D+      L +   +        
Sbjct: 762 ----------------------DGFVTTLMNRRRYLPDITSSNFNLRSFAERT------- 792

Query: 595 GKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  +Q  + DI+ + M +             ++L VHDE++ E P      +  L 
Sbjct: 793 --AMNTPIQGSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDHLMKLV 850

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
             +M         +PLK +      +
Sbjct: 851 PEVMENAVK--LSVPLKVDIAHGSTW 874


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 187/662 (28%), Gaps = 139/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           I   +    ++       ++   +  +  L + L D+T+     N  F+     +    L
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENLLRKMLEDKTIKK---NV-FDIKRTYVGLHRL 393

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            +      +    + +      ++  +     +           K  +  + KG   + P
Sbjct: 394 NLKAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAVP 448

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            D     H+ A     E  K  +    +  ++       E     +   +   G +++  
Sbjct: 449 DDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEAS 508

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
           ++ +L    A + ++L+  I +       +      L   LF   G+  +  ++    T 
Sbjct: 509 VLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTS 567

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L    +       IL+    +      +  L E +  DGR+         + TGR S
Sbjct: 568 VEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDGRIHTRYLQT-LTATGRLS 626

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVA 379
                 QN+P                                +R   +    +G      
Sbjct: 627 SVDPNLQNIP------------------------TRTNEGKQIRKAFVPSTKDGYIF-SC 661

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438
           D + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +   
Sbjct: 662 DYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFG 721

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L                                        +
Sbjct: 722 IVY-----GISDYGLSKNL---------------------------------------GI 737

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  ++  +     D  +           +                    
Sbjct: 738 SRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH------------------- 778

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    D+      + +      R          + +Q  + DI+   M N  
Sbjct: 779 -------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQ 822

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          +VL VHDE++ + P     ++  +   +M         +PL A+     
Sbjct: 823 KKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGH 880

Query: 672 RY 673
            +
Sbjct: 881 NW 882


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 195/806 (24%), Positives = 313/806 (38%), Gaps = 142/806 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDE-PVKLWDRTEQS------AMPS 55
            ID ETRSP  + K G + Y+          AY    E  VKLW              P+
Sbjct: 40  TIDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPT 99

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKK----TLGID-IPSKRWICTSVLARTNGLPSSLK 110
           DL  ++     +  AHN+ FER ++        G   I   +W C++  A    LP SL+
Sbjct: 100 DLFAFILAGG-LVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLE 158

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSI----------------------DSPPYDCT 148
            A  A++      K  EG+ L+ + CK                          S  Y   
Sbjct: 159 EAVAAMDLGID--KDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIV 216

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                +      +YCK+DV A   L   L  LS+ E + W +DQ +N RG R DL +  +
Sbjct: 217 YHETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQ 276

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
              + ++ RK+L+  +  LT   I S+ +  A++ +L     +DL D +  TLK  L + 
Sbjct: 277 ALSMASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLENE 334

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLS-EAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
            ++  A+ ++      + ++  K N +  +A   D R R  + ++GA  TGRW+G   Q 
Sbjct: 335 ELSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQV 393

Query: 328 QNLPRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADL 381
            N P ++   +   +  + +  G+         D +   S  +R  I+A  G++L+VAD 
Sbjct: 394 HNFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADY 453

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN------------TPIDKVSKEQR 429
           A IEAR + W A +   +  F  G+DIY       +              P   +    R
Sbjct: 454 AAIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCR 513

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN--------------------VKST 469
             GK   L LGY  G   F       G+   +                        + + 
Sbjct: 514 QFGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTP 573

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV---------KKAWRAKHQGVLQL 520
            +    E+A+ +    +          +      ++V            +RA++  V  +
Sbjct: 574 PSKMTPEEAKRYSARKRQAARSRRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKAM 633

Query: 521 WKDLTEGFACVVQ-----EGGSISARRVANVPRLVMR----------------------- 552
           W D        V+     E  +        +PR V                         
Sbjct: 634 WSDQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVDA 693

Query: 553 -------RHKRDVHIVLPSSRRLVYSDVKGDCS--------------YLNTATSQLMRER 591
                  +  + +H  LPS RR+ Y D +   +               ++  T + +R  
Sbjct: 694 LAGTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTA 753

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           TYGGK+ ENI QA++RDI+ E M N+ K G  YD +++VHDE+V E  +     +    +
Sbjct: 754 TYGGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDEDKGD-LEEFET 812

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           LM+  P WA G P+ AE    KRYRK
Sbjct: 813 LMSDLPIWAAGCPIVAEAERFKRYRK 838


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/663 (13%), Positives = 192/663 (28%), Gaps = 141/663 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI- 86
           I   +    ++       ++   +  +  L Q L D+T+     N  F+    +  +G+ 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENSLRQMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
             DI ++       + +      ++  +     +           K  +  + KG   + 
Sbjct: 392 RLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHL----YDDYSVKTDLEVYGKGKKQAV 447

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P D     H+ A     E  K  +    +  ++       E  +  +   +   G +++ 
Sbjct: 448 PDDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
            ++ +L    A + ++L+  I +       +      L   LF   G+  +  ++    T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYST 566

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L    +       IL+    +      +  L + +  DGR+         + TGR 
Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLDCIQPDGRIHTRYLQT-LTTTGRL 625

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVV 378
           S      QN+P                                +R   +    +G     
Sbjct: 626 SSVDPNLQNIP------------------------TKTEEGKQIRKAFVPSTKDGYIF-S 660

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
            D + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +  
Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   + +  ++  +     +  +           +                   
Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH------------------ 778

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+      + +      R          + +Q  + DI+   M N 
Sbjct: 779 --------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINM 821

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          +VL VHDE++ + P     ++  +   +M         +PL A+    
Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWG 879

Query: 671 KRY 673
             +
Sbjct: 880 HNW 882


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 107/683 (15%), Positives = 187/683 (27%), Gaps = 149/683 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF+D+E          G + +           A + E V+     E S+    L Q LR+
Sbjct: 340 LFLDLE----------GGYQF---GTPRGVGVA-EGERVRYLLCGEDSSWAEGLTQMLRE 385

Query: 64  ETVMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----AL 116
             +  +     ++     +    LG  +P   +    + A          +        L
Sbjct: 386 PGLTVL-----YDIKSWKVLADRLGFTLPGDAF-DVLLAAYLINPQDGHPDLTEVFERYL 439

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             S       EG+                +  R   + A  L G Y     +        
Sbjct: 440 GVSVPP---LEGRGSPQ----------GEERQRWWALYAAALAGVYPALKRDLEIRGLWP 486

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L      E  L  +   +   G R+D   +  L E  + E  +L+E+I KL  G   +  
Sbjct: 487 LYHNL--ELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLA-GTTFNLN 543

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF   G+     ++    T   +L            IL+           + 
Sbjct: 544 SPKQLAEILFDKLGLPPQKKTKTGYSTGADVLEKLAPYHEIVQRILDWRQLIKLQSTYIE 603

Query: 294 TLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L + +    G++    Q    + TGR S      QN+P                     
Sbjct: 604 GLLKVIRPETGKIHTCFQQAV-TATGRLSSTDPNLQNIP--------------------- 641

Query: 353 IADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R   I S  G K+V AD + IE RVLA  + +   ++AF +  DI+  
Sbjct: 642 ---VRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLDIHAR 698

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T A+ F  P ++V+   R   K +   + Y               L + +          
Sbjct: 699 TAAEVFEVPQEQVTPGMRRQAKAVNFGIVYG-----ISDYGLSQNLGIPRKEAAEFIARY 753

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
           F  + + +S+         +      L+G          R     +     +L       
Sbjct: 754 FAKFPRVKSYMEETVAAARKNGFVTTLLGR---------RRYLPDIHSSNYNLRSFAERT 804

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                   +        +V               RRL   D +                 
Sbjct: 805 AMNTPIQGSAADIIKRAMVEVD------------RRLTEGDFR----------------- 835

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL- 650
                               + +                E+V E P     ++  +    
Sbjct: 836 -------------------AKMLLQVHD-----------ELVFEVPPEEVGALQDMVKQA 865

Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673
           M    S    +PLK + +    +
Sbjct: 866 MESAVS--LDVPLKVDIHAGDNW 886


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/721 (13%), Positives = 176/721 (24%), Gaps = 189/721 (26%)

Query: 31   TLCAYAWDDEPVKLWDRTEQSA---MPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82
               A + +      +          +P+      L   L +  +   AH+      + K+
Sbjct: 423  VGLALSSEPGRGWYFPFMGPPGATVIPAQTARDLLTPLLENPRIAWHAHDLKAHLRVLKR 482

Query: 83   TLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA-LNF-------------------- 118
              G  +  K      VL+          +        LN                     
Sbjct: 483  H-GWTLAGKGV-DPMVLSYLLESGERNHTAPELAKRFLNHTLSRPPEPNASATTTRSKPK 540

Query: 119  -------------------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQA 155
                                +  T    G  L         D         +        
Sbjct: 541  ANPKRGRSRSQADASEETNPDDETPDVVG--LPQTTGTPPRDGFLVFADDPHQDGPAAVP 598

Query: 156  WQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDL 205
             +    +     +A+  L + L      E          R L  +   + + G  +D   
Sbjct: 599  PERLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRAR 658

Query: 206  VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTL 261
            + +L    +     L+    +L      +      LR+ LF   G+            T 
Sbjct: 659  LRQLSRDFSARLTDLERQAHQLAGEPF-NLSSPPQLRVILFERLGLPPRGKTPKGEASTA 717

Query: 262  KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            + +L           ++L            L+ L      DGR+R T    G + TGR S
Sbjct: 718  QEVLEELAALHQLPKVLLEHRRIEKLKNTYLDALPNLTHPDGRIRATFNQ-GVTATGRLS 776

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVA 379
                  QN+P                                VR   +A     + L+ A
Sbjct: 777  SSEPNLQNIP------------------------VRTEEGRQVRQAFVAGDPARQVLLTA 812

Query: 380  DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            D + IE RVLA  + +   ++AF    DI+    AK F   +D V+ +QR + K +    
Sbjct: 813  DYSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNF-- 870

Query: 440  GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                            GL                                   A +  + 
Sbjct: 871  ------------GVIYGLS------------------------------AHGLASRLGIS 888

Query: 500  GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             +       A+  ++  V      +        +       RR  N              
Sbjct: 889  QSEAAAFINAYFDQYPHVEAFMTRVLTQARDTGRVETLEGRRRAING------------- 935

Query: 560  IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618
            I     R                      R           ++Q  + D++   M     
Sbjct: 936  IKHVEGRHRNL----------------AERTAI------NTVIQGSAADLIKRAMIAVDQ 973

Query: 619  -----KNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
                 K    ++L +HDE++ E        +   +   M    +     PLK +      
Sbjct: 974  RLKETKLPARMILQIHDELLFEVERDALTETARLVQEAMIHAAT--LETPLKVDLAAGPN 1031

Query: 673  Y 673
            +
Sbjct: 1032 W 1032


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            A      I   + A+D E        E         Q L  ++V+ + H    +  L  
Sbjct: 324 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 379

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +          +    +++ +        SL                           + 
Sbjct: 380 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARM 423

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +           N +   +LF  Y                     ER L  +   + + G
Sbjct: 424 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 465

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253
             +D +++ +L +      + L+++I  L      +      L   LF   G+      +
Sbjct: 466 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCTF-NVASARQLGKLLFERMGLSSSAKKM 524

Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              S  T   +L   +       D +L     S      ++ L   V +  +   T    
Sbjct: 525 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 584

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                                +R   +A  
Sbjct: 585 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 620

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F         E R   
Sbjct: 621 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 678

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               +                                   
Sbjct: 679 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 698

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +           +   +  +    + +            +               
Sbjct: 699 ----GITRQEASQYVAQYFRSYPEIKSYMEAIKAYARKYGYTRTAF-------------- 740

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+   S +  +     T      R            +Q  + D++ +
Sbjct: 741 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 779

Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
            M N       G  I+L VHDE++ E P++    V  L   +M    ++   +PLK +  
Sbjct: 780 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 836

Query: 669 EAKRY 673
               +
Sbjct: 837 VGSSW 841


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDSALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 141/382 (36%), Positives = 205/382 (53%), Gaps = 8/382 (2%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 4   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 63  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++KRL  
Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q
Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+L+  R  +S ++  K   L +
Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMK 302

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+AL  G       
Sbjct: 303 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 362

Query: 355 DPLGLASDCVRSCIIASNGKKL 376
           + + L S  +R CIIA  GK  
Sbjct: 363 NIMELTSSALRGCIIAPTGKNW 384


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 202/573 (35%), Positives = 276/573 (48%), Gaps = 58/573 (10%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL      
Sbjct: 1   MDWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIG 60

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + 
Sbjct: 61  AVERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLP 120

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +  ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 332 RQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           R   S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWIAGEDWKIKAFANGEDI---------------------------------------- 408
           LAW+AGE  K+ AF + +                                          
Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YA +F      V+K+QR IGKV ELALGY GG   F   A+   +DL+  ++    
Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +A     W +               AC++ K+AWR  H  +   WK L    
Sbjct: 361 PPLLLQ--EAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583
              ++   +           + M+  +  + + LPS R L Y+  +    G  SY+ T  
Sbjct: 419 TDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+++E  D   F
Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALNSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
          Length = 886

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/664 (13%), Positives = 183/664 (27%), Gaps = 138/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A +        D     W  ++  A+ ++  L  +L D +             +    LG
Sbjct: 338 ADLIGFYIGAPDH----WYVSDDVALLAEPVLKDWLEDASHPKAVFGVK-RTQVAANRLG 392

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           + +    +    + +      ++  +     N  E                  + ++   
Sbjct: 393 VHLAGVDF-DLLLASYLLNTTNNSNDLGTVANLHE-------------YQNVQTDEAVYG 438

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195
              +        L  ++  +   A   L  +L              D E  L L+   + 
Sbjct: 439 KGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQME 498

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G R+D   + ++    +Q  K L+E +     G   +      L + LF   G+ +V 
Sbjct: 499 ITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETFNINSPKQLGVILFEKMGLPVVK 557

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T   +L            IL+    +      +  L +++  D ++       
Sbjct: 558 KTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGLLKSIHQDNKVHTRYLQT 617

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371
             ++TGR S      QN+P                                +R   +   
Sbjct: 618 -LTQTGRLSSVDPNLQNIP------------------------VRLAEGRKIRQAFVPSH 652

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRA 430
              ++  +D + IE RVLA I+G+    +AF    DI+  T  K F     D+V+ + R 
Sbjct: 653 PDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIHANTAMKIFGLNSADEVTPDMRR 712

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K     + Y               + + +        + FE +   +   + +  +  
Sbjct: 713 QAKATNFGIVYG-----ISDYGLSQNIGISRQEAKRFIDAYFEQYPGVQQFMVDIVKKAR 767

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           E    + L            R     +     +L                          
Sbjct: 768 EEGYVETLFHR---------RRYLPDIHAKNFNLRSFAER-------------------- 798

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                                      + +NT             K+   ++Q       
Sbjct: 799 ---------------------------TAMNTPIQG---SAADIIKVAMILMQ------- 821

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P      +  L  S+M      A  +PLK E   
Sbjct: 822 --QELKKANLQARMLLQVHDELIFEAPTEEIPILQKLVPSVMDSAVKLA--VPLKVESGF 877

Query: 670 AKRY 673
              +
Sbjct: 878 GPTW 881


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 201/573 (35%), Positives = 275/573 (47%), Gaps = 58/573 (10%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             W  F EY +RDV A R++ KRL     S  E  LW LDQTINDRG  +D DL      
Sbjct: 1   MDWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIG 60

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + + +  L      LT G ++++ Q  AL  +L    G+ L DM + T++  L    + 
Sbjct: 61  AVERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLP 120

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +  ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 332 RQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           R   S+ ++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWIAGEDWKIKAFANGEDI---------------------------------------- 408
           LAW+AGE  K+ AF + +                                          
Sbjct: 241 LAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           Y   YA +F      V+KEQR IGKV ELALGY GG   F   A+   +DL+  ++    
Sbjct: 301 YKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +A     W +               AC++ K+AWR  H  +   W+ L    
Sbjct: 361 PPLLLQ--EAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAA 418

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583
              +    +           + ++  +  + + LPS R L Y+  +    G  SY+ T  
Sbjct: 419 TDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+++E  D   F
Sbjct: 474 ITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 VQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/670 (12%), Positives = 180/670 (26%), Gaps = 146/670 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLF---ERI------ 78
                A +  +E            +P   +L              + +   +        
Sbjct: 374 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 425

Query: 79  -LFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIA 133
            L ++ +  +I         + A            ++           +K    GK  I 
Sbjct: 426 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 485

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
           +  K + ++        N+V       +  K+ +E   +        ++ E  L      
Sbjct: 486 QAMKDAPEAFL------NYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLAD 539

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           + + G     + + +  + +A    +L++ I +       +      L + LF    +  
Sbjct: 540 MENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQLGVILFEKLSMPY 598

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              ++    T   +L            IL     +       + L   ++ DGR+  +  
Sbjct: 599 GKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFN 658

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   + 
Sbjct: 659 QT-ITATGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFVP 693

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+  QR 
Sbjct: 694 KEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRR 753

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   + Y        +      L                                 
Sbjct: 754 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 776

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +         + +   +  +      L                RR        
Sbjct: 777 -------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSS 829

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                                   G+   +                   + +Q  + DI+
Sbjct: 830 NFMQ-----------------RSFGERVAM------------------NSPIQGTAADII 854

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663
              M               ++LTVHDE++ ET      +V  +    M      A  + L
Sbjct: 855 KIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA--VTL 912

Query: 664 KAEGYEAKRY 673
           + + +  K +
Sbjct: 913 EIDAHVGKNW 922


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + + + +        +L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKRKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/673 (13%), Positives = 187/673 (27%), Gaps = 136/673 (20%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL----QYLRDETVMCVAHNSL 74
           VG+    E+  I     AW +E  +++    Q  +  D L    Q    +  +  + N  
Sbjct: 322 VGIELLEEKGQILGLGLAWGEEETEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIK 381

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKA 130
                  + + +           + A          +  +            K    GK 
Sbjct: 382 ----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK- 435

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                   + +    +  ++    A+              +E  K L   +D E  L   
Sbjct: 436 ---LSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELY--TDMEMPLLFT 490

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ++ + + +  E +    + L+++I +       +      L + LF    
Sbjct: 491 LADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKLE 549

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
           +     ++    T   +L            IL     +       + L+  ++ DGR+  
Sbjct: 550 LPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQLTKLKSTYADGLANYIAEDGRIHS 609

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T      + TGR S      QN+P                                +R  
Sbjct: 610 TFNQT-ITATGRISSTEPNLQNIP------------------------VRTELGRLLRKV 644

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I  +G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+  
Sbjct: 645 FIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPL 704

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   + Y        +      L                              
Sbjct: 705 QRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------------- 730

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                     +         +++   +  +      L E              RR     
Sbjct: 731 ----------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKEKGYVSTLFHRRRPVPEL 780

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
           +                          G+   +                   + +Q  + 
Sbjct: 781 KSSNFMQ-----------------RSFGERVAM------------------NSPIQGTAA 805

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKG 660
           DI+   M    K          +VL VHDE++ ET       V  +    M +       
Sbjct: 806 DIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAAH--LS 863

Query: 661 LPLKAEGYEAKRY 673
           + L+ + +  + +
Sbjct: 864 VALEIDMHTGENW 876


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/665 (13%), Positives = 180/665 (27%), Gaps = 149/665 (22%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80
           +A +A I      +D+E     + TE   +  +   L +              +F+    
Sbjct: 341 FANEAAIGGIGLCFDEEHAYCIEVTEQITKEFLLEKLSKLNESCGRFV-----MFDIKEA 395

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGS 139
            K L I      +  T V A                        +            +  
Sbjct: 396 MKWLPIKNQKHCFDAT-VAAYLLNP------------LKNDYTYEDVA---------REQ 433

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRG 198
           ++    + + A     ++ +  +   D+     E  + L    D E  L      +   G
Sbjct: 434 LNIVIEEKSEAYVKVCYEAYTAFKGSDLLYKKLEETQMLHLFEDIEMPLVFTLYDMERNG 493

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            R + + +      +     +L+++I ++  G   +      L + LF    +     ++
Sbjct: 494 IRAEGEALKVYSSQLGGRISELEKEIYEMA-GESFNINSPKQLGVILFEKLLLPGSKKTK 552

Query: 259 G---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T  S+L            +L     +       + L   +  DGR+         +
Sbjct: 553 SGYSTAASVLDKLAPDYPIVSKVLEYRQLTKLKSTYADGLVNYIEEDGRIHSKFNQT-IT 611

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                                +R   +  +G  
Sbjct: 612 ATGRISSTEPNLQNIP------------------------VRVELGRLIRKVFVPEDGYI 647

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            V AD + IE RVLA  +G+   I+A+   +DI+  T ++ F+ P ++V+  QR   K +
Sbjct: 648 FVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAV 707

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y        +      L                                      
Sbjct: 708 NFGIVYG-----ISSFGLSEDLS------------------------------------- 725

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +         + +   + G+     D       +         RR             
Sbjct: 726 --IGRKEAAKYIEDYFKTYPGIKTFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQ- 782

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                              G+   +                     +Q  + DI+   M 
Sbjct: 783 ----------------RSFGERVAM------------------NAPIQGTAADIMKIAMI 808

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
              +          +VL VHDE++ E        V  +    M +  S    +PL+ + +
Sbjct: 809 GVNRRLKEQNLKSRLVLQVHDELLIEAYRPELPEVEKILREEMEQAAS--LDVPLEIDMH 866

Query: 669 EAKRY 673
             + +
Sbjct: 867 TGENW 871


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/677 (15%), Positives = 205/677 (30%), Gaps = 136/677 (20%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
            Q    +  +    +  I   A+++ ++ V   D  +      DL +    E      H 
Sbjct: 312 LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIFEKEKFEFTTHE 366

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEG 128
              + ++     GI+    +++ T+++A       S   L       L       +   G
Sbjct: 367 IK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 424

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           K    +  +   +    D   +   +   LF    K          KRL  L + E  L 
Sbjct: 425 KGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKRL--LLEIEMPLV 479

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            + +++   G+ +D +++ +L + I     ++ + I K       +      L  +LF  
Sbjct: 480 EVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEK 538

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             + ++  ++    T   +L          + I+     +      +N     +  + R+
Sbjct: 539 LNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQLTKLKSTYINGFLPLMDENNRV 598

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
               +    + TGR S      QN+P                                +R
Sbjct: 599 HSNFKQMV-TSTGRISSTEPNLQNIP------------------------IREEFGRQIR 633

Query: 366 SCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
              I    +G  +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++K
Sbjct: 634 RAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEK 692

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+ E R   K +   +                G+     S                    
Sbjct: 693 VTPEMRRAAKAVNFGII--------------YGISDYGLS-------------------- 718

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                        K+     +     +  +++GV +  + +             ++    
Sbjct: 719 ----------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIMN---- 764

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 RR    ++        T  SQ  R            +Q
Sbjct: 765 ----------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQ 793

Query: 604 AISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656
             + DI+   M               ++L VHDE+V +T       V  +    M     
Sbjct: 794 GSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENVVQ 853

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  E      +
Sbjct: 854 --LKVPLVVEIGVGPNW 868


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/664 (13%), Positives = 185/664 (27%), Gaps = 140/664 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            I   A++ +   + + D      +  D  L  +L D        ++    +   + +G 
Sbjct: 335 EIVGFAWS-NGNRIYVTDNLS---LLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVG- 389

Query: 87  DIPSKRW-ICTSVLARTNGLPSSLKNAC---LALNFSEH-LTKMEEGKALIARFCKGSID 141
                     + +         S  +          +E    +   GK       + +  
Sbjct: 390 --SPNGIQFDSLLACYLLDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGLPEDNER 447

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +   +   +Q         K   E   +    L    + E  L  +   +   G  +
Sbjct: 448 FYSHLARKVATMQKLDT-----KLSDELVEKGQWTLYK--EMELPLSFILAEMEITGIHV 500

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D   ++ ++   A +   ++E I    +    +      L + LF   G+ ++  ++   
Sbjct: 501 DAQRLIAMKSEFATKLHDIEEKIYAQANERF-NLNSPKQLGVILFEKMGLPVIKKTKTGY 559

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L    +     + IL     +      +  L   + SDG++         ++TG
Sbjct: 560 STAVDVLEQLKVQAPIVEDILTYRQIAKIQSTYVEGLLRMIQSDGKVHTRYVQT-LTQTG 618

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 619 RLSSVDPNLQNIP------------------------IRLEEGRKIRQAFVPRNKNWVIY 654

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
            +D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K + 
Sbjct: 655 SSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRRQAKAVN 714

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     SQN                               
Sbjct: 715 --------------FGIVYGISDYGLSQN------------------------------L 730

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++ GV    +++ E                              
Sbjct: 731 GITRKQAQQYIDTYFERYPGVKAYMENVVEQAKKDGYVETLYH----------------- 773

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+      + +      R          + +Q  + DIL   M  
Sbjct: 774 ---------RRRYLPDLYAKNYNIRSFA---ERTAI------NSPIQGSAADILKIAMIE 815

Query: 617 A------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                   K    ++L VHDE+V E P+     V  L   +M    + A  +PL  +   
Sbjct: 816 MNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHAVTLA--IPLVTDSNW 873

Query: 670 AKRY 673
            + +
Sbjct: 874 GETW 877


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/670 (12%), Positives = 180/670 (26%), Gaps = 146/670 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLF---ERI------ 78
                A +  +E            +P   +L              + +   +        
Sbjct: 378 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 429

Query: 79  -LFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIA 133
            L ++ +  +I         + A            ++           +K    GK  I 
Sbjct: 430 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 489

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
           +  K + ++        N+V       +  K+ +E   +        ++ E  L      
Sbjct: 490 QAMKDAPEAFL------NYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLAD 543

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           + + G     + + +  + +A    +L++ I +       +      L + LF    +  
Sbjct: 544 MENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQLGVILFEKLSMPY 602

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              ++    T   +L            IL     +       + L   ++ DGR+  +  
Sbjct: 603 GKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFN 662

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   + 
Sbjct: 663 QT-ITATGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFVP 697

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+  QR 
Sbjct: 698 KEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRR 757

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   + Y        +      L                                 
Sbjct: 758 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 780

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +         + +   +  +      L                RR        
Sbjct: 781 -------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSS 833

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                                   G+   +                   + +Q  + DI+
Sbjct: 834 NFMQ-----------------RSFGERVAM------------------NSPIQGTAADII 858

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663
              M               ++LTVHDE++ ET      +V  +    M      A  + L
Sbjct: 859 KIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA--VTL 916

Query: 664 KAEGYEAKRY 673
           + + +  K +
Sbjct: 917 EIDAHVGKNW 926


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/661 (14%), Positives = 185/661 (27%), Gaps = 129/661 (19%)

Query: 26  EQAVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
             A       A +D  + + WD  ++      L ++L D        +   + +      
Sbjct: 334 HHAPFLGIGLATEDTVMFVPWDVAKEW---KALCEWLADPAKEKWVFDGKRDTVGLAWH- 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEH-LTKMEEGKALIARFCKGSI 140
              I    +    + +       S   L +       +     +   GK          +
Sbjct: 390 DFAIKGISF-DVYLASYLLNAAESNPTLDSIAAQYAQTRVLSDEEVYGKGAKRL--VPEM 446

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           D              WQ      ++  E   E       L + E  L ++   +  +G +
Sbjct: 447 DVLSEHVAHKAAAI-WQSVPVLREQLAENEME-----KLLGELEAPLSMVLALMEKQGVK 500

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           ++ + ++++ E + ++   L + I +L  G   +      L   LF    + ++  ++  
Sbjct: 501 VNSERLVQMGEDLDKKLAGLTDQIYELAGGAF-NINSPKQLGEILFDRLSLPVLKKTKTG 559

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
             T   +L          D IL            +  L++ +     ++         + 
Sbjct: 560 PSTSADVLEKLAPYHPIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQAT-TA 618

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   I   +G  
Sbjct: 619 TGRLSSTDPNLQNIP------------------------IRMEEGRKIREAFIPSEDGWY 654

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + IE R+LA I+ ++  I AF  G DI+  T    F    ++V+   R   K +
Sbjct: 655 MLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAV 714

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L++ +          F+ +   +     +  Q       
Sbjct: 715 NFGIVYG-----ISDYGLSQNLNITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHV 769

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L+           R     +     +L                               
Sbjct: 770 TTLLNR---------RRYLPDIRSSNFNLRSFAER------------------------- 795

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                 + +NT             KL    +Q        E   
Sbjct: 796 ----------------------TAMNTPIQG---TAADVIKLAMIRMQ--------EA-- 820

Query: 616 NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
              + G    ++L VHDE+V E PD     +  L   +M    S    +PLK +  + + 
Sbjct: 821 -LEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVMESALS--LDVPLKVDVSDGRT 877

Query: 673 Y 673
           +
Sbjct: 878 W 878


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/662 (16%), Positives = 189/662 (28%), Gaps = 150/662 (22%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82
           AY E+  IT CA+    + V L            L      E +    HNS        +
Sbjct: 330 AYGEEGEITQCAF-LKSDTVHLV-TEGAEKAVMGLCSL---EGMSLCVHNSKPLFAWLDR 384

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
            +G +          + A      +S                            K   + 
Sbjct: 385 -MGGEARVS--YDAMLAAYLLNPNAS------------------------DYSLKRLQEE 417

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRI 201
                 +  +  AWQ       ++ +A   L      L +  E  L  +   + + G+ +
Sbjct: 418 AGTAAPKLENETAWQAAVLPRVKNWQAASLLANGQRKLLEEMEIPLAQVLARMENIGFLV 477

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D + +    E +  E + L + I +       +      L   LF+  G+     ++   
Sbjct: 478 DGESIRVYGERLETEIEALQKQIYEEVGYEF-NINSPKQLGDALFVKLGLPSGKKTKTGY 536

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   IL        A +L+L+    +         + + +  DGR+         +RTG
Sbjct: 537 STNAEILEKLRYDHPAVELVLHYRTLTKLKSTYCEGMLKVIGPDGRIHSNFNQTE-TRTG 595

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   +A  G  LV 
Sbjct: 596 RISSTEPNLQNIP------------------------VRTELGRELRKFFLAKEGWVLVD 631

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA ++  IKAF + EDI+  T ++ F  P + V+   R+  K +   
Sbjct: 632 ADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKAVNFG 691

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+                                   +    +
Sbjct: 692 IV--------------YGIG------------------------------AFSLSKDINV 707

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +     +   + GV +  K++ E                                
Sbjct: 708 SRKEAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVETLFH------------------- 748

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    ++      L     ++ R            +Q  + DI+   M    
Sbjct: 749 -------RRRYLPELTASNFNLRAFGERVAR---------NMPIQGTAADIIKIAMVRVD 792

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           +          ++L VHDE++ E P+        +    M    S    +P+ AE    K
Sbjct: 793 RRLKRENMRARLILQVHDELIVEAPEDEAEQAARILTEEMEGAVS--LTVPMVAEASVGK 850

Query: 672 RY 673
            +
Sbjct: 851 TW 852


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/677 (15%), Positives = 205/677 (30%), Gaps = 136/677 (20%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
            Q    +  +    +  I   A+++ ++ V   D  +      DL +    E      H 
Sbjct: 312 LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIFEKEKFEFTTHE 366

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEG 128
              + ++     GI+    +++ T+++A       S   L       L       +   G
Sbjct: 367 IK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 424

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           K    +  +   +    D   +   +   LF    K          KRL  L + E  L 
Sbjct: 425 KGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKRL--LLEIEMPLV 479

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            + +++   G+ +D +++ +L + I     ++ + I K       +      L  +LF  
Sbjct: 480 EVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEK 538

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             + ++  ++    T   +L          + I+     +      ++     +  + R+
Sbjct: 539 LNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQLTKLKSTYIDGFLPLMDENNRV 598

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
               +    + TGR S      QN+P                                +R
Sbjct: 599 HSNFKQMV-TSTGRISSTEPNLQNIP------------------------IREEFGRQIR 633

Query: 366 SCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
              I    +G  +V AD + IE RVLA ++G++  I++F N EDI++ T ++ F  P++K
Sbjct: 634 RAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEK 692

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+ E R + K +                    G+     S                    
Sbjct: 693 VTPEMRRVAKAVNF--------------GIIYGISDYGLS-------------------- 718

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                        K+     +     +  +++GV +  + +             ++    
Sbjct: 719 ----------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIMN---- 764

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 RR    ++        T  SQ  R            +Q
Sbjct: 765 ----------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQ 793

Query: 604 AISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656
             + DI+   M               ++L VHDE+V +T       V  +    M     
Sbjct: 794 GSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENVVQ 853

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  E      +
Sbjct: 854 --LKVPLVVEIGVGPNW 868


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/653 (13%), Positives = 182/653 (27%), Gaps = 148/653 (22%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIPSKRWIC 95
            EP ++W   +   + ++   +   E    +     ++     L  +   ++I       
Sbjct: 400 PEPPRVWVVDDPGPIFAEAKPFWSSEKHRKLF----YDVKSLWLLARQEDVEIQGID-GD 454

Query: 96  TSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             + A          SL      L   +   +   GK ++         +  +  T A  
Sbjct: 455 GLIGAYLLDPLANNYSLARLAHELIDWKISPE--AGKQVLPAEDAALAVAGLFHLTPAME 512

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            +  +       RDVE                  L  +  ++   G +++  ++  +   
Sbjct: 513 AKLGEESLGKLYRDVEL----------------PLAPILGSMEWIGIKVNPKVLQDMAGE 556

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN 269
           +  + +KL  +I +L  G   +   T      LF   G+           T   +L   +
Sbjct: 557 LNSDIQKLQAEIHELA-GETFNINSTQQFGKILFEKLGLPVIKRTKTGYSTDVEVLEELS 615

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   +L            +  L   +   +GR+  +      + TGR S      Q
Sbjct: 616 DRHPIVPKVLEFRQLMKLKSTYVEGLLPLIDGPEGRIHTSFNQSV-TATGRLSSTEPNLQ 674

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P                                +R   IA   G  L+ AD + IE R
Sbjct: 675 NIP------------------------VRLEQGRHIRKAFIAPEPGWTLLAADYSQIELR 710

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA ++ +     AFA  +DI+  T ++ F+ P+  V++E R   K +   +        
Sbjct: 711 ILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIV------- 763

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+     S                                  +     +   
Sbjct: 764 -------YGISDFGLS------------------------------RDLGVTRGEAKEYI 786

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           + +  ++ GV      +                                   +     RR
Sbjct: 787 EGYFRRYHGVRGYIDRIIAEARQQG--------------------------FVTTLLGRR 820

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------G 621
               D+              +R+           +Q  + DI+   M    K        
Sbjct: 821 RRLPDLFVKN---------KIRQNFGERTAMNTPIQGTAADIIKAAMVKIPKALKDHGLK 871

Query: 622 YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++L VHDE++ E P+     V   +  +M K       +PL  +  +   +
Sbjct: 872 TRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIE--ISVPLTVDVKKGANW 922


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/663 (15%), Positives = 201/663 (30%), Gaps = 131/663 (19%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFK 81
           Y + A I    +  + + V +    +      +L+Q+L D+    + +++   +   +  
Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKDYKNLVQWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
             LGI+I +  +    + +       S+ +    ++           K  I  F KG   
Sbjct: 382 HRLGINIENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITVFGKGKKH 436

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             P +     H+ +           +++  E + ++  L D E  L  +   + + G   
Sbjct: 437 HIPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYT 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D++ + +++  I ++   L  +I +   G   +      L + LF    + ++  ++   
Sbjct: 497 DINDLKEMEFEIQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGY 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L          D IL     S      +  L + +S D R+        A +TG
Sbjct: 556 STAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R      S    ++
Sbjct: 615 RLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  ++    AF NG DI+  T  K FN   D+V    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     SQ+                                
Sbjct: 711 --------------GIVYGISDYGLSQS------------------------------LG 726

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     + A   GV Q   D+ +           +  RR               
Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL--- 783

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+   M   
Sbjct: 784 --------------RSFAERTAMNT------------------PIQGSAADIIKLAMVKF 811

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670
           ++          ++L VHDE++ E P +        +  +M +       +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/669 (12%), Positives = 180/669 (26%), Gaps = 146/669 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLF---ERI------- 78
               A +  +E            +P   +L              + +   +         
Sbjct: 379 CLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAALG 430

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIAR 134
           L ++ +  +I         + A            ++           +K    GK  I +
Sbjct: 431 LLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIEQ 490

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             K + ++        N+V       +  K+ +E   +        ++ E  L      +
Sbjct: 491 AMKDAPEAFL------NYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLADM 544

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G     + + +  + +A    +L++ I +       +      L + LF    +   
Sbjct: 545 ENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQLGVILFEKLSMPYG 603

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             ++    T   +L            IL     +       + L   ++ DGR+  +   
Sbjct: 604 KKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFNQ 663

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P                                +R   +  
Sbjct: 664 T-ITATGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFVPK 698

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G + + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+  QR  
Sbjct: 699 EGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRN 758

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +   + Y        +      L                                  
Sbjct: 759 AKAVNFGIVYG-----ISSFGLSQDLS--------------------------------- 780

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 +         + +   +  +      L                RR         
Sbjct: 781 ------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSN 834

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                                  G+   +                   + +Q  + DI+ 
Sbjct: 835 FMQ-----------------RSFGERVAM------------------NSPIQGTAADIIK 859

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664
             M               ++LTVHDE++ ET      +V  +    M      A  + L+
Sbjct: 860 IAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA--VTLE 917

Query: 665 AEGYEAKRY 673
            + +  K +
Sbjct: 918 IDAHVGKNW 926


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/663 (12%), Positives = 180/663 (27%), Gaps = 145/663 (21%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            +A  ++   L  R  +     ++  +L +  +     N+  + +   + LGI +    +
Sbjct: 341 GFALGNDEQWLVSRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR-LGISLDGIDF 399

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
               + +       +  +    L                      + +       +    
Sbjct: 400 -DLLLASYLLNTNDNSNDLGK-LAHEH------------GYDDVQTDEEVYGKGAKRTIP 445

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDL 203
              QLF ++      A  +L  +L    +           E  L  +   +   G  +D 
Sbjct: 446 DDDQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVDA 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             +  +   + +   +++E I +       +   T  L   LF    + ++  ++    T
Sbjct: 506 QTLKNMGSKLTERLTEIEEQIYQEAGEEF-NINSTKQLGKILFEKLKLPVIKKTKTGYST 564

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              +L          + IL     S      +  L + + S D ++         ++TGR
Sbjct: 565 AVDVLEKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHTRYLQT-LTQTGR 623

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G ++  
Sbjct: 624 LSSVDPNLQNIP------------------------VRLPEGRLIRQAFVPSHEGWQIFS 659

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMEL 437
           +D + +E RVLA I G+    + F NGEDI+ +T  + F+  P  ++ +  R   K +  
Sbjct: 660 SDYSQVELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVN- 718

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +Q +                               
Sbjct: 719 -------------FGIVYGISDYGLAQRIH------------------------------ 735

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +  +      + +  +   V     D  E              RR               
Sbjct: 736 VSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPDINSKSFSR--- 792

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+   M   
Sbjct: 793 --------------RSFAERTAMNT------------------PIQGSAADIIKIAMIKM 820

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                       ++L +HDE+V E P      +  L   +M         +PLK +    
Sbjct: 821 QDELEKRQLKAKMLLQIHDELVFEAPKEEIPVLSKLVPDVMDSAVK--LSVPLKVDSKYG 878

Query: 671 KRY 673
             +
Sbjct: 879 DTW 881


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/651 (13%), Positives = 180/651 (27%), Gaps = 134/651 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A    +E   +     +  +         DE +  + HN   + I     L  DI  K 
Sbjct: 341 IAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396

Query: 93  W-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPYDCTRA 150
           +   + +         S        + +         G   +            +   + 
Sbjct: 397 YTHDSEIAEYILNSTES------NYDINNISNTYFSRGYKDLEELLGKGKKKIKFSDLKY 450

Query: 151 NHVQAWQLFGE---YCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           + +  +  F     Y  RDV+  +    +      + E  L  +  ++   G R D  ++
Sbjct: 451 DELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAIL 510

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG---IDLVDMSEGTLKS 263
            ++   +  +   L+ DI +       +      L + LF   G   +        T   
Sbjct: 511 DEIGIDLDNKILNLENDIYEKAGEEF-NINSPKKLGLILFDKLGYPVLKKTKTGYSTNAD 569

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSG 322
           +L          D +L     +      +  L E ++ + G +         + TGR S 
Sbjct: 570 VLEKLKKDGDIIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFNQT-ITSTGRISS 628

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   ++S G  LV AD +
Sbjct: 629 TNPNLQNIP------------------------IKTDEGKLIRKAFLSSEGCVLVDADYS 664

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I+ ++  I AF N +DI+  T AK F    + V+   R+  K +   + Y 
Sbjct: 665 QIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVYG 724

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L+                                       +    
Sbjct: 725 -----ISDYGLSQNLN---------------------------------------IPRKL 740

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +   + +   + G+     +  +           ++                       
Sbjct: 741 AQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTILN----------------------- 777

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    ++      + +      R            +Q  + DI+   M    +   
Sbjct: 778 ---RRRYIPELSAKNFNIRSFG---ERIAI------NTPIQGSAADIIKIAMVKVYRALK 825

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666
                  ++L +HDE++ +  +    +V  L   +M         + LK +
Sbjct: 826 ENNLKSKLILQIHDELIVDAREDEVETVKKLMRNIMENAVEMV--VKLKVD 874


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/678 (14%), Positives = 189/678 (27%), Gaps = 148/678 (21%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLF 75
           VG+    E   +   +  +  E   +           + S L   L  +  + +     F
Sbjct: 438 VGIKLIMENKSLVGISVYYGSEASFIIPCEGFITPDFLTSKLNGLLEKKITLAI-----F 492

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           +   +   L  +         ++        +S         +     K  E        
Sbjct: 493 DIKKYLPYLNAN-EESPCFDVTIAGYLLEPDAS------TYEYQTIAEKYLE------LD 539

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ER 185
                +        +  +     + +    +      ++  L+ L             E 
Sbjct: 540 LPSEKEVFSGQTYASLSLLDQDQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEM 599

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L      +  RG R+D + +    + +     +L++ I +L      +      L   L
Sbjct: 600 PLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGVEF-NINSPKQLGEIL 658

Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F   G+     ++    T   +L   +       LIL     +       + L   V  D
Sbjct: 659 FQRLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQLTKLKSTYADGLVSYVEGD 718

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+ GT     A  TGR S      QN+P                               
Sbjct: 719 GRIHGTFNQTIA-ATGRLSSTEPNLQNIP------------------------IRMELGR 753

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   I  +G   + AD + IE R+LA ++ +   I+A+   +DI+  T ++ F+TP D
Sbjct: 754 KIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFD 813

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+  QR+  K +   + Y   +                                     
Sbjct: 814 EVTSAQRSNAKAVNFGIVYGISSFSL---------------------------------- 839

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                          +     E     +   + GV      L E      +E G +    
Sbjct: 840 ----------GQDLDITRKEAEEYINKYFMTYPGVKTYLDGLIEE----GKETGVVKTLY 885

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                  R     ++        +A     R          + +
Sbjct: 886 ----------------------GRIRPVPNLTNSNFMKRSAE---ERIAM------NSPI 914

Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
           Q  + DI+   M +        K    ++L +HDE++ ET ++    V  +    M +  
Sbjct: 915 QGTAADIMKLAMIHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA 974

Query: 656 SWAKGLPLKAEGYEAKRY 673
           S    +PL+ E      +
Sbjct: 975 S--LSVPLEVEVANGNNW 990


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/638 (15%), Positives = 193/638 (30%), Gaps = 128/638 (20%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                  +  +Y  DE +  V+ +   +  +    LGI+I    +    ++        S
Sbjct: 250 PDQKFVDNFKKYFEDENINKVSFDIKEDI-VLFNKLGIEIN-FPYDDIMLMHYLIDPSRS 307

Query: 109 LKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +        L +     +   GK    +  K   +        +  +           
Sbjct: 308 SYDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSS--IINAIEDSLDIL 365

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D      +++        E  L  +   +   G+  D + + K+++ ++ E + L++ I
Sbjct: 366 TDKLKELSMYELYKDC---EIKLSKVLADMEITGFVCDKNELEKIKDEVSVELEGLEKII 422

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +L      +      L + LF    + ++  ++    T   +L            I   
Sbjct: 423 YELAGSEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERY 481

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     L +L E +  DGR+R T +    + TGR S      QNLP          
Sbjct: 482 REMYKLKSTYLESLEECIDGDGRIRSTFKQNV-TATGRLSSTEPNLQNLP---------- 530

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +R    A N K L+ AD + IE RVLA +A +    +A
Sbjct: 531 --------------IRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEA 576

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F++  DI+  T ++ FNTPID+V+K QR+  K +   + Y               L++  
Sbjct: 577 FSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYG-----ISDYGLSQNLNIP- 630

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                                     +   + +   +  + +  
Sbjct: 631 --------------------------------------RKRAKEYIENYLNTYPQIKKYM 652

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           KD+ +                                 +    +RR    ++      + 
Sbjct: 653 KDIVKKAKEEG--------------------------FVNTIFNRRRYVPEINSKNFNVR 686

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
           +   ++              +Q  + DI+   M N+ +N         IVL +HDEI+ E
Sbjct: 687 SFGERV---------ALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIE 737

Query: 636 TPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672
                      +  S M +  +    +PL  +      
Sbjct: 738 ASKKDLQKAKEILKSSMEEAVN--LKVPLLVDIDSGDS 773


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/663 (13%), Positives = 192/663 (28%), Gaps = 141/663 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI- 86
           I   +    ++       ++   +  +  L + L D+T+     N  F+    +  +G+ 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLHKMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
             D+ ++       + +      ++  +     +           K  +  + KG   + 
Sbjct: 392 RLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAV 447

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P D     H+ A     E  K  +    +  ++       E  +  +   +   G +++ 
Sbjct: 448 PNDNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
            ++ +L    A + ++L+  I +       +      L   LF   G+  +  ++    T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYST 566

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L    +       IL+    +      +  L + +  DGR+         + TGR 
Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLDCIQPDGRIHTRYLQT-LTTTGRL 625

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVV 378
           S      QN+P                                +R   +    +G     
Sbjct: 626 SSVDPNLQNIP------------------------TKTEEGKQIRKAFVPSTKDGYIF-S 660

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
            D + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +  
Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   + +  ++  +     +  +           +                   
Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH------------------ 778

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+      + +      R          + +Q  + DI+   M N 
Sbjct: 779 --------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINM 821

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          +VL VHDE++ + P     ++  +   +M         +PL A+    
Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSAVK--LDVPLIADSNWG 879

Query: 671 KRY 673
             +
Sbjct: 880 HNW 882


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/673 (13%), Positives = 187/673 (27%), Gaps = 136/673 (20%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL----QYLRDETVMCVAHNSL 74
           VG+    E+  I     AW +E  +++    Q  +  D L    Q    +  +  + N  
Sbjct: 322 VGIELLEEKGQILGLGLAWGEEKTEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIK 381

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKA 130
                  + + +           + A          +  +            K    GK 
Sbjct: 382 ----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK- 435

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                   + +    +  ++    A+              +E  K L   +D E  L   
Sbjct: 436 ---LSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELY--TDMEMPLLFT 490

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  ++ + + +  E +    + L+++I +       +      L + LF    
Sbjct: 491 LADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKLE 549

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
           +     ++    T   +L            IL     +       + L+  ++ DGR+  
Sbjct: 550 LPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQLTKLKSTYADGLANYIAEDGRIHS 609

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T      + TGR S      QN+P                                +R  
Sbjct: 610 TFNQT-ITATGRISSTEPNLQNIP------------------------VRTELGRLLRKV 644

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I  +G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+  
Sbjct: 645 FIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPL 704

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR   K +   + Y        +      L                              
Sbjct: 705 QRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------------- 730

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                     +         +++   +  +      L E              RR     
Sbjct: 731 ----------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKEKGYVSTLFHRRRPVPEL 780

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
           +                          G+   +                   + +Q  + 
Sbjct: 781 KSSNFMQ-----------------RSFGERVAM------------------NSPIQGTAA 805

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKG 660
           DI+   M    K          +VL VHDE++ ET       V  +    M +       
Sbjct: 806 DIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAAH--LS 863

Query: 661 LPLKAEGYEAKRY 673
           + L+ + +  + +
Sbjct: 864 VALEIDMHTGENW 876


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/636 (14%), Positives = 161/636 (25%), Gaps = 129/636 (20%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERI----LFKKTLGIDIPSKRWICTSVLARTNGLPS 107
              +++  +L DE V        ++      +     G+           + A       
Sbjct: 362 EAAAEVRAWLADEQVPKRG----YDLHRADLVLFWH-GVAFAGAE-HDVQLAAYLLDPTE 415

Query: 108 S---LKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           S   +          +     E  GK    +F     D       R        L  +  
Sbjct: 416 SDQTISGLAAKYQLPQVPGDDEVYGKGA--KFKVPEPDVLSRHLARKADALLRILPLQRE 473

Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                   +LF  L      E  L  +   +  +G  ++ + + +L      +  KL   
Sbjct: 474 DLAKYEMEKLFYEL------EMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVAR 527

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I ++      +   T  L   LF   G+ ++  ++    T   +L            IL 
Sbjct: 528 IYEIAGQEF-NINSTKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHEIVQFILE 586

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +      +  L + +S   G++    +   A  TGR S      QN+P        
Sbjct: 587 YRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIA-ATGRLSSQYPNLQNIP-------- 637

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +    G  ++ AD + IE RVLA I+G+   
Sbjct: 638 ----------------IRLEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGL 681

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            +AF +  DI+  T    F    D+V    R   K +   + Y               L+
Sbjct: 682 QEAFLHDMDIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYG-----ISDYGLSQNLN 736

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           + +          F  ++    +   +            L+           R     + 
Sbjct: 737 ITRKEAARFIEQYFNAFQGVRRYMDEIVKAAKRDGYVKTLLER---------RRYLPEIN 787

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +L                                          +L    +  +  
Sbjct: 788 ASNFNLRSFAERTAMNTPIQGTAADII---------------------KLAMVRMDEELH 826

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
                                          L   M           L VHDE+V E P 
Sbjct: 827 KHG----------------------------LKSRML----------LQVHDELVFEVPP 848

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                +  L    M K       +PLKAE      +
Sbjct: 849 EELEFMSKLVPETMGKALE--LSVPLKAEVSSGLNW 882


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + + + +        +L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + + + +        +L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGREF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN+                               +   
Sbjct: 715 -------------YGISDYGLSQNL------------------------------GITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + + + +        +L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       E  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/658 (14%), Positives = 175/658 (26%), Gaps = 149/658 (22%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR 92
             A DD    L D     A    +   L+D  +    H    +      T G   +    
Sbjct: 406 GLAADDNTALLLDLNAPEATA--IRDALKDPALPKTTH----DLKSLLHTAGQRGLEIAN 459

Query: 93  W-ICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                 + +           L +    +  S                     +  P    
Sbjct: 460 VAHDVMLYSYLINPTHGSHKLADVAARMGQSITPL---------------VKNQTPPATA 504

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                 A        +   E   EL   L P  + +  L  +   +   G RID  ++  
Sbjct: 505 LPEAASAIHRLAPALRIQAE-EGEL---LKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRD 560

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKS 263
           +   +A +   L E I  ++     +      L   LF    +       +     T + 
Sbjct: 561 MSSKLAVDMDALAERIYAMSGHRF-NINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQD 619

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L        A  L+L     +         L +    +GR+  T    G + TGR S  
Sbjct: 620 VLEELAAHHEAPALVLEYRQLAKLRSNYTEQLPQLADREGRVHTTFNQVG-TATGRLSST 678

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R+  I + G  L+ AD + 
Sbjct: 679 NPNLQNIP------------------------TRTALGREIRAAFIPAEGNVLLSADYSQ 714

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A  + +   + A+  G+DI+  T A+ F    + + KE R   K +   + Y  
Sbjct: 715 IELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVY-- 772

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+     +                                  +     
Sbjct: 773 ------------GISPFGLAAQ------------------------------LGIPQGEA 790

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +L  + +R ++ GV              + +  S                      +   
Sbjct: 791 KLYIERYRERYAGVTAF-------IERTISDTRSTG-------------------KVSTL 824

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618
             R     D+            +               +Q  + D++   M         
Sbjct: 825 FGRTRPIPDIGSRNPNQRGFAERT---------AVNTPLQGTAADMIKIAMLKIDAALTE 875

Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674
            K    + L VHDE++ + P      V  L  L M    S    +P+ AE  +   +R
Sbjct: 876 RKLATRMTLQVHDELLFDAPVGETEEVAALVKLEMEGVVS--LSIPIVAEVGKGPNWR 931


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/671 (13%), Positives = 174/671 (25%), Gaps = 147/671 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNS 73
            K  +  +A QA I      +  + +             +  +L +       +     S
Sbjct: 330 TKNTLPLFAGQADIGGIGLCYGADKIFCIRADGDITAEYLLRELKEV---SGSVQTF--S 384

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-LTKMEEGKALI 132
           +F+     +   +          ++ A                        +    + L 
Sbjct: 385 MFDIKESMQYFTVA-EPSACFDVTIAAYLLNP------------LKNDYTYEDVAREQLG 431

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
                   D              +       ++  E   E        +D E  L     
Sbjct: 432 LLLEDKVEDHVKVCYEAYTA---YASVEPLRQKLKETQME-----HLFTDIEMPLVFTLY 483

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G RI+ + +    E +  + ++L+++I +       +      L + LF   G+ 
Sbjct: 484 DMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYEAAGEEF-NINSPKQLGVILFDKMGLK 542

Query: 253 LVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
               ++    T   +L            IL     +       + LS  +S DGR+ G  
Sbjct: 543 GGKKTKTGYSTAADVLDKLAPDYPVVAQILEYRQLTKLKSTYADGLSNYISGDGRIHGKF 602

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                + TGR S      QN+P                                +R   I
Sbjct: 603 NQT-ITATGRISSTEPNLQNIP------------------------VRMELGRLIRKVFI 637

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             +G   + AD + IE RVLA  +G++  I A+   +DI+  T ++ F+ P  +V+  QR
Sbjct: 638 PEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGEVTDLQR 697

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y        +      L                                
Sbjct: 698 RNAKAVNFGIVYG-----ISSFGLSQDLS------------------------------- 721

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +           +   + G+     D       +         RR       
Sbjct: 722 --------ITRKEAAKYIDDYFKTYPGIKLFLDDTVAHAKEMGYVVTLFGRRRPVPELSS 773

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                                    G+   +                   + +Q  + DI
Sbjct: 774 SNFMQ-----------------RSFGERVAM------------------NSPIQGTAADI 798

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLP 662
           +   M    +          +VL VHDE++ E        V  +    M    S    +P
Sbjct: 799 IKIAMIGVNRRLKEKHMRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAAS--LEVP 856

Query: 663 LKAEGYEAKRY 673
           L+ + +    +
Sbjct: 857 LEIDMHTGDNW 867


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 200/691 (28%), Gaps = 133/691 (19%)

Query: 2   SKLFIDI-ETRSPQPLPKVGVWAYAEQAVITL----------CAYAWDDEPVKLWDRTEQ 50
            ++  DI  T          +        I              + +D E   + D    
Sbjct: 298 KQVSFDILPTFEYVDFNH--LDEAVIHFEIDGSNYLKDDILKFGF-YDKERYIVVDADNI 354

Query: 51  SAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              P +L+++L +E    V +++   F   +    L I+I +       + +       +
Sbjct: 355 KDYP-ELIKWLENENSKKVVYDAKKTF---VIAHRLNINIQNI-VFDAMLASYIIDPSRT 409

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           + +    +            K  ++ + KG     P       H+ +     +  K  +E
Sbjct: 410 IDDVYSVVTNYHQTY----VKEDVSIYGKGKKRHVPDTEILNTHIASITKSIDAVKPLME 465

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E  +++  L D E  L  +   + + G   D++ +  +Q+ + ++ + L + I    
Sbjct: 466 KELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAA 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L + LF    + ++  ++    T   +L          + IL     +
Sbjct: 526 GEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLQNEHPIINDILEYRQLA 584

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L + +S+D R+        A +TGR S      QN+P              
Sbjct: 585 KLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDPNLQNIP-------------- 629

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R     S     ++ AD + IE RVLA I  +D   +AF +
Sbjct: 630 ----------IRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIH 679

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G+DI+  T  K F    ++V+   R   K +   + Y               L++ +   
Sbjct: 680 GQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYG-----ISDYGLSQSLNITRKEA 734

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            +        +   + +   +          + L+           R     +     +L
Sbjct: 735 KIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNL 785

Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                   +      SA  +  +  +   +                              
Sbjct: 786 RGFAERTAMNTPIQGSAADIIKLAMVEFDKQ----------------------------- 816

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                             VQ  S            K    ++L VHDE++ E P +    
Sbjct: 817 ------------------VQHTS-----------YKAK--LLLQVHDELIFEVPKSEVEE 845

Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                  +M         +PLK +      +
Sbjct: 846 FSLFVEDIMEHALD--LDVPLKVDSNYGPTW 874


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/628 (14%), Positives = 179/628 (28%), Gaps = 146/628 (23%)

Query: 59  QYLRDETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + L+ E+V  V     ++         L      +      + +       S      + 
Sbjct: 352 EILKSESVKIV-----YDLKNIFHELYLENTDNIRNCEDVMIASYVLDSTRS------SY 400

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                                    +      + +      +  +    ++ +  +L   
Sbjct: 401 ELETLFISYL---------------NTDLAAVKKDKKVTSVILLKRLWDELSSLIDLNSC 445

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               ++ ER L  +   +   G+++D D +L+  + I  +   L++ I ++  G   +  
Sbjct: 446 QFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIA-GEWFNIN 504

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L           LIL+    +        
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQ 564

Query: 294 TLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L +A++   GR+  T    G + TGR +      QN+P                     
Sbjct: 565 GLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP--------------------- 602

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T
Sbjct: 603 ---VKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQT 659

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+ F   ID V+ E R+  K +   +                G+               
Sbjct: 660 AAEVFGVDIDDVTPEMRSQAKAVNFGIV--------------YGISDY------------ 693

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                               A   K+           +  ++  V +   ++ +      
Sbjct: 694 ------------------GLARDIKISRKEAAEFINRYFERYPKVKEYLDNIVKFARDNG 735

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                 +                          RR    D+K        A +   R   
Sbjct: 736 YVLTLFN--------------------------RRRYVKDIKSAN---RNARNYAERIAM 766

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                  + +Q  + DI+   M    +          I+L VHDE++ E P      V  
Sbjct: 767 ------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820

Query: 647 LCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           +    M      A  +PL  E  E   +
Sbjct: 821 IVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 104/654 (15%), Positives = 198/654 (30%), Gaps = 130/654 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A         +++            +Y   + +  V+ +   + +LF K LGI+I    
Sbjct: 351 IAIKTSSSKTYIYN--PDEKFVEKFKKYFEADNIKKVSFDIKEDIVLFDK-LGINISL-P 406

Query: 93  WICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           +  T ++        S  +        L +     +   GK    +  K           
Sbjct: 407 YDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVENEEDLLGKGKSKKSYKDLDSDNLGKY- 465

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A+ V A +   +   + +E    ++         E  L  +   +   G+  D + + K
Sbjct: 466 LASIVNAIEDSLDILTQKLE-ELSMYDLYKDC---EIKLSKVLADMEITGFICDKNELEK 521

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           +++ ++ E   L++ I +L      +      L   LF    + ++  ++    T   +L
Sbjct: 522 IKDEVSLELGDLEKIIYELAGSEF-NINSPKQLSKILFEDLKLPIIKKTKTGYSTNAQVL 580

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                     + I             L +L E +  DGR+R T +    + TGR S    
Sbjct: 581 EKLRKKHPIIEKIERYREMYKLKSTYLESLEECIDEDGRIRSTFKQNV-TATGRLSSTEP 639

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QNLP                                +R    A +GK L+ AD + IE
Sbjct: 640 NLQNLP------------------------IRTEEGRKIRKAFKADDGKVLIDADYSQIE 675

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A +    +AF+   DI+  T ++ F+TPID+V+K QR+  K +   + Y    
Sbjct: 676 LRVLAHLANDKKMQEAFSKDIDIHTKTASEVFSTPIDEVTKLQRSEAKAVNFGIIYG--- 732

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      L++                                            + 
Sbjct: 733 --ISDYGLSQNLNIP---------------------------------------RKRAKE 751

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             + +   +  + +  KD+ +            +                          
Sbjct: 752 YIENYLDTYPEIKKYMKDIVKKAKEDGYVNTIFN-------------------------- 785

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG 621
           RR    ++      + +   ++              +Q  + DI+   M N      K  
Sbjct: 786 RRRYVPEINSKNFNVRSFGERV---------ALNTPIQGTAADIIKFAMINSYQNLQKAK 836

Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672
               IVL +HDEI+ E           +  S M         +PL  +    + 
Sbjct: 837 IDAKIVLQIHDEIIIEASKKDLEKAKEILKSSMQDAVD--LKVPLLVDIDSGES 888


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            A      I   + A+D E        E         Q L  ++V+ + H    +  L  
Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +          +    +++ +        SL                           + 
Sbjct: 394 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARM 437

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +           N +   +LF  Y                     ER L  +   + + G
Sbjct: 438 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 479

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253
             +D +++ +L +      + L+++I  L      +      L   LF   G+      +
Sbjct: 480 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCTF-NVASARQLGKLLFERMGLSSSAKKM 538

Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              S  T   +L   +       D +L     S      ++ L   V +  +   T    
Sbjct: 539 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 598

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                                +R   +A  
Sbjct: 599 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 634

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F         E R   
Sbjct: 635 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 692

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               +                                   
Sbjct: 693 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 712

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +           +   +  +    + +            +               
Sbjct: 713 ----GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 754

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+   S +  +     T      R            +Q  + D++ +
Sbjct: 755 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 793

Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
            M N       G  I+L VHDE++ E P++    V  L   +M    ++   +PLK +  
Sbjct: 794 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 850

Query: 669 EAKRY 673
               +
Sbjct: 851 VGSSW 855


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143
           +    +    + A       + K+        E       +   GK          +   
Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R  HV          +       ELF  L      E  L  +   +  +G ++D 
Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  + E +A   K+++++I KL      +      L + LF    + ++  ++    T
Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            IL+           +  L + V  D  ++         ++TGR
Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G  +  
Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              A     + +     GV +  +D+ +          +    R   +P +  R      
Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               + G    ++L VHDE++ E P      +  L   +M      A  +PLK +     
Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 885

Query: 672 RY 673
            +
Sbjct: 886 TW 887


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143
           +    +    + A       + K+        E       +   GK          +   
Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R  HV          +       ELF  L      E  L  +   +  +G ++D 
Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  + E +A   K+++++I KL      +      L + LF    + ++  ++    T
Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            IL+           +  L + V  D  ++         ++TGR
Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G  +  
Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              A     + +     GV +  +D+ +          +    R   +P +  R      
Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               + G    ++L VHDE++ E P      +  L   +M      A  +PLK +     
Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 885

Query: 672 RY 673
            +
Sbjct: 886 TW 887


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/684 (14%), Positives = 189/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLEEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVAFITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +    V     
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKVFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/613 (13%), Positives = 161/613 (26%), Gaps = 129/613 (21%)

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-ALNFSEHLTKMEEG-KALI 132
            I+ +   G  +       T +        L   +       L++         G K   
Sbjct: 1   MIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEIYLHYQTIHIDELIGPKGKN 58

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
            +  +   D  P D        A          + E      +RL    D E  L  +  
Sbjct: 59  QKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLF--YDIEMPLVPVLV 113

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI- 251
            I   G  +D + + +       + ++++++I +L  G   +      +   LF    I 
Sbjct: 114 NIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA-GETFNIASPKQVGEVLFDKLKIV 172

Query: 252 DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
           +    ++     T + +L          + IL            ++ L   ++   GR+ 
Sbjct: 173 EKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVH 232

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            +      + TGR S      QN+P                                +R 
Sbjct: 233 TSFNQTV-TATGRLSSSNPNLQNIP------------------------IRDENGKEIRK 267

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             I   G     AD + IE R++A ++ +   I AF +  DI+  T AK +   +  V  
Sbjct: 268 AFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDS 327

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           + R   K                      G+ +   ++                      
Sbjct: 328 DMRRKAKTAN--------------FGIIYGISVFGLAER--------------------- 352

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      +     + +   +   + GV        +                    
Sbjct: 353 ---------MNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH------- 396

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              R+    D+    + +     +               +Q  +
Sbjct: 397 -------------------RKRFLPDINSRNAVVRGYAERN---------AINAPIQGSA 428

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
            DI+   M    +          ++L VHDE+    P      V  +        ++   
Sbjct: 429 ADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE-EMEKAYRMH 487

Query: 661 LPLKAEGYEAKRY 673
           +PLKA+    K +
Sbjct: 488 VPLKADCGWGKNW 500


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/664 (13%), Positives = 185/664 (27%), Gaps = 144/664 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              +   +D+       +    +  +  +   L DE +     N  F+     +    LG
Sbjct: 106 VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLG 157

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141
           I      +    + +      ++  +         ++S        GK           +
Sbjct: 158 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 216

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  ++ N +++ +       +D E        L      E     +   +   G ++
Sbjct: 217 LFNHLASKVNAIESLKKTLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMNGMKV 269

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           +   +++LQ   A + K+L++ I     G   +      L   LF   G+ ++  ++   
Sbjct: 270 EASTLIQLQNEFAVKLKELEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY 328

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    +      +  L + +  DGR+         + TG
Sbjct: 329 STAVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATG 387

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 388 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 423

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
             D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K + 
Sbjct: 424 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 483

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     S+N+                              
Sbjct: 484 F--------------GIVYGISDYGLSKNL------------------------------ 499

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  +        +           +                  
Sbjct: 500 GISRKRAQEFIDNYFEQYPQIEDYMNKAVQEARDKGYAETIMH----------------- 542

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+        T  +   R          + +Q  + DI+   M N
Sbjct: 543 ---------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMIN 584

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             K          +V+ VHDE++ + P     ++  +   +M         +PL A+   
Sbjct: 585 MQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 642

Query: 670 AKRY 673
              +
Sbjct: 643 GHNW 646


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143
           +    +    + A       + K+        E       +   GK          +   
Sbjct: 388 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 444

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R  HV          +       ELF  L      E  L  +   +  +G ++D 
Sbjct: 445 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 498

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  + E +A   K+++++I KL      +      L + LF    + ++  ++    T
Sbjct: 499 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 557

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            IL+           +  L + V  D  ++         ++TGR
Sbjct: 558 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 616

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G  +  
Sbjct: 617 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 713 IV--------------YGISDYGLSQN------------------------------LGI 728

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              A     + +     GV +  +D+ +          +    R   +P +  R      
Sbjct: 729 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 784

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 785 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 813

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               + G    ++L VHDE++ E P      +  L   +M      A  +PLK +     
Sbjct: 814 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 871

Query: 672 RY 673
            +
Sbjct: 872 TW 873


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 196/661 (29%), Gaps = 133/661 (20%)

Query: 28  AVITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A I       ++        D    S       ++L DE +     ++    +  K    
Sbjct: 338 ADIQGFGIQNENG-CYFIPSDVALGS---EAFTKWLADEDMRKYTFDAKRAIVALKW-KD 392

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           ++I    +    + A          +          + +    K+    + KG+  + P 
Sbjct: 393 VEIKGIDF-DLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPE 447

Query: 146 DCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               A H  A ++   +  +       E  ++    ++ E  L  +   +  +G ++D +
Sbjct: 448 QGVVAEH-VARKVHVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTE 506

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            +  + + +A   K++++ I +L      +      L + LF    + ++  ++    T 
Sbjct: 507 RLRNMGDELAGRLKEMEQKIYELAGTEF-NINSPKQLGVVLFENLNLPVIKKTKTGYSTS 565

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRW 320
             +L            IL+           +  L + V  D  ++         ++TGR 
Sbjct: 566 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRL 624

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +R   I S  G  +  A
Sbjct: 625 SSTDPNLQNIP------------------------IRLEEGRKIRQAFIPSTEGWVMYAA 660

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +
Sbjct: 661 DYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGI 720

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+     SQN                                + 
Sbjct: 721 V--------------YGISDYGLSQN------------------------------LGIT 736

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             A     + + A   GV +   ++ +          S    R   +P +  R       
Sbjct: 737 RKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL--- 791

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---- 615
                           + + +NT                   +Q  + DI+ + M     
Sbjct: 792 ------------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMAN 821

Query: 616 NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
              + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      
Sbjct: 822 RLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPT 879

Query: 673 Y 673
           +
Sbjct: 880 W 880


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGAMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLEKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   + AF    DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +   +R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLKRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/662 (13%), Positives = 178/662 (26%), Gaps = 136/662 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I             +    E +      +  L++E      +++  E  +    L IDI
Sbjct: 329 EIIGVGILVGA-HTFVIPPDEIAQ-NESFINALQNEDTKKYVYDAK-ETKVLFSRLDIDI 385

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPP 144
                 C  + +        + +   +            +M  GK    +       +  
Sbjct: 386 KGIE-HCVMLASYLLDPALKIIDVAQSAQMQGIYYVESDEMIFGKGA--KMHIPERTNLF 442

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                  +        +  K +     EL   L      E  L L+   +  +G +++  
Sbjct: 443 KHIASEVNAIHEVSALQIRKLNELKQLELLTAL------ELPLSLVLADMEMQGIKVNRQ 496

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----G 259
            + ++Q+ I     +L   I +       +      L + LF    +D     +      
Sbjct: 497 TLQEMQQEIQSRLDELITRIHEHAGSTF-NINSPKQLGVVLFEDLKLDSPKKKKTKTGYS 555

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL     S      +  L + +  D ++        A +TGR
Sbjct: 556 TAVDVLESLAGKHPIIEDILLYRTLSKLQSTYVEGLQKLIGDDDKIHTRFNQVIA-QTGR 614

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +       +  
Sbjct: 615 LSSIDPNLQNIP------------------------VRLDEGRKIRKAFVPSEPNSVIFA 650

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA I G+   ++AF  G DI+  T  K FN   ++V+ + R   K +   
Sbjct: 651 ADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNF- 709

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     SQ+                                +
Sbjct: 710 -------------GIVYGISDYGLSQS------------------------------LGI 726

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +     +      V     D+ +           ++ RR            +   
Sbjct: 727 TRKDAQAFIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRG-- 784

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                            + + +NT                   +Q  + DI+   M +  
Sbjct: 785 ---------------FAERTAMNT------------------PIQGSAADIIKLAMVHYN 811

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAK 671
           +          ++L VHDE++ E P     +    +  +M         +PL+ E    +
Sbjct: 812 EQVKETDFKAKLLLQVHDELIFEVPKDELEAFSLFVKHVMENALE--LKVPLEVEYDSGE 869

Query: 672 RY 673
            +
Sbjct: 870 SW 871


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/672 (13%), Positives = 189/672 (28%), Gaps = 118/672 (17%)

Query: 12  SPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           S        +    E    A I   +   DD+   L            +   L  + V  
Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIDDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
              +   + +   + LG+ +    +    +++       +  +    L   +H     E 
Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKINF-DLLLVSYLLDNSENSNDLG--LLAQQHEYYDVES 438

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
              I          P        H+          K  +    E  ++L   +  ER L 
Sbjct: 439 DEQI-YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLS 497

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           ++   +   G ++D + +  +Q  + +   +L+++I         +      L + LF  
Sbjct: 498 IVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEK 556

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304
             + ++  ++    T   +L          D IL     +      +  L + VS  DG+
Sbjct: 557 LKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGK 616

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
                     + TGR S      QN+P                                +
Sbjct: 617 AHTRYTQT-LTSTGRLSSVDPNLQNIP------------------------VRLEEGRKI 651

Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-ID 422
           R   +    G ++  +D + IE RVLA I+ +    +AF  G DI+ +T  + FN    D
Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +   + Y               + + +        +  + +   + + 
Sbjct: 712 EVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
             + +   E    + +            R     +     +L                  
Sbjct: 767 EKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFNLRSFAER------------ 805

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                              + +N+             K+    +
Sbjct: 806 -----------------------------------TAMNSPIQG---SAADIIKVAMINM 827

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           Q    ++L E           ++L VHDE++ E P      +  +   +M         +
Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876

Query: 662 PLKAEGYEAKRY 673
           PLK E    + +
Sbjct: 877 PLKVESKHGQTW 888


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 104/685 (15%), Positives = 199/685 (29%), Gaps = 167/685 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            KL+++ ET               E   +   A  +D   V     +    +    ++++
Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFD-GKVY---ISTDEEL---FVKFI 356

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSE 120
            D  +     N      L+      +I  +       + A                    
Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEP--------------- 398

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             +K    K L       +              + ++ F  Y +   +   ++       
Sbjct: 399 -SSKDYSDKNL------CASYEIALPVCTDEQNEKYEAFACYAELCEKLGDKIKAHGQEK 451

Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              + E  L  +   + + G  +D   +    E+++ + K+L+  I +       +    
Sbjct: 452 LLSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYESAGCEF-NINSP 510

Query: 239 YALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L + LF   G+     ++    T   +L          +++L     S         L
Sbjct: 511 KQLGVVLFENLGLPCKKKTKSGYSTNAEVLESLRYEHPVVEMVLRYRTLSKLNSTYCEGL 570

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + ++ DGR+         +RTGR S      QN+P                        
Sbjct: 571 LKVIADDGRIHSNFNQTE-TRTGRISSTEPNLQNIP------------------------ 605

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R    A +G  LV AD + IE RVLA I+G+   IKAF + EDI+  T ++
Sbjct: 606 VRTELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITASQ 665

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            FN P+D V+   R+  K +   +                G+                  
Sbjct: 666 VFNMPLDMVTPIMRSRAKAVNFGIV--------------YGIG----------------- 694

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                            A    +     +   +++ A + GV    K++ E         
Sbjct: 695 -------------AFSLAKDIGVSNKEAKHYIESYLAHYSGVDSYMKNVVEKA------- 734

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                D ++     RR    ++      +     ++ R      
Sbjct: 735 -------------------NADGYVETMFGRRRNLPELTSSKHMIRAFGERVAR------ 769

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+   M    +          +VL VHDE++ E P      V  +  
Sbjct: 770 ---NMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQDESMRVALIVQ 826

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
             M         +PL A+    + +
Sbjct: 827 EEMENAVK--MSVPLTADAAIGRTW 849


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/652 (15%), Positives = 193/652 (29%), Gaps = 128/652 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92
           + +      +    E       L+Q+L D+    + +++   +   +    LGI+I +  
Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + +       S+ +    ++           K  I  F KG     P +     H
Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +           +++  E + ++  L D E  L  +   + + G   D++ + +++  
Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           I ++   L  +I +   G   +      L + LF    + ++  ++    T   +L    
Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 D IL     +      +  L + +S D R+        A +TGR S      QN
Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388
           +P                                +R      S    ++ AD + IE RV
Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I  ++    AF N  DI+  T  K FN   D+V    R   K +             
Sbjct: 662 LAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+     SQ+                                +     +    
Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A   GV Q   D+ +           +  RR                          
Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 783

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                  + + +NT                   +Q  + DI+   M   ++         
Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P +        +  +M +       +PLK +      +
Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 184/665 (27%), Gaps = 153/665 (23%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84
           A I   A A   +        E+  + SD+  +L       VA    F+       L   
Sbjct: 440 AEIRGMAVA-APKRAYYVRFGERLEL-SDVRPWLV-SDRPKVA----FDLKSMAFALDAH 492

Query: 85  GIDI-PSKRWICTSVLARTNGLPSS---LKNA-CLALNFSEHLTKMEEGKALIARFCKGS 139
           GI +     W    + A           L +     L                      +
Sbjct: 493 GIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARELGQELPTFDDGV---REKWLAYTA 549

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
              PP   + A  ++  ++   Y                   + E  L  +   +   G+
Sbjct: 550 SQLPPLFESLAYTIRMQEMERLYQ------------------EVELPLAFVLAKMEITGF 591

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
            ++ + ++   + + +   ++ ++I  L  G   +      L   LF   G+  +  ++ 
Sbjct: 592 YVNREKLVAFGQELTERITRITQEIYDLA-GTSFNLNSPKQLGEILFDKLGLPALKKTKT 650

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315
              T   +L            IL+    +      +  L + +    GR+         +
Sbjct: 651 GYSTSADVLEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQT-LT 709

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P +      L +  +                              
Sbjct: 710 ATGRLSSSEPNLQNIPIRLEEGRRLRRVFEPTY-----------------------KDWV 746

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           +  AD + IE R+LA ++G++  I AF    DI+  T A  F  P ++V+   R   K +
Sbjct: 747 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 806

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+     +QN+                             
Sbjct: 807 NF--------------GIVYGISDFGLAQNL----------------------------- 823

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +   +++  K  GV +   ++ +           ++                
Sbjct: 824 -NIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMN---------------- 866

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+           S   R            +Q  + D++   M 
Sbjct: 867 ----------RRRYLPDIHSRN---YQLRSFAERTAM------NTPIQGSAADLIKLAMV 907

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
              +          ++L VHDE++ E P+    ++  L    M    +    +PLK +  
Sbjct: 908 RIDRAMRDAQMDARMLLQVHDELIFECPNDELAALEVLVRDNMENAMT--LSVPLKVDTA 965

Query: 669 EAKRY 673
               +
Sbjct: 966 YGPTW 970


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 194/652 (29%), Gaps = 128/652 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92
           + +      +    E       L+Q+L D+    + +++   +   +    LGI+I +  
Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + +       S+ +    ++           K  I  F KG     P +     H
Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +           +++  E + ++  L D E  L  +   + + G   D++ + +++  
Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           I ++   L  +I +   G   +      L + LF    + ++  ++    T   +L    
Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 D IL     +      +  L + +S D R+        A +TGR S      QN
Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388
           +P                                +R      S    ++ AD + IE RV
Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I  ++    AF NG DI+  T  K FN   D+V    R   K +             
Sbjct: 662 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+     SQ+                                +     +    
Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A   GV Q   D+ +           +  RR                          
Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 783

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                  + + +NT                   +Q  + DI+   M   ++         
Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P +        +  +M +       +PLK +      +
Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 194/652 (29%), Gaps = 128/652 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92
           + +      +    E       L+Q+L D+    + +++   +   +    LGI+I +  
Sbjct: 363 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 419

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + +       S+ +    ++           K  I  F KG     P +     H
Sbjct: 420 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 474

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +           +++  E + ++  L D E  L  +   + + G   D++ + +++  
Sbjct: 475 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 534

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           I ++   L  +I +   G   +      L + LF    + ++  ++    T   +L    
Sbjct: 535 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 593

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 D IL     +      +  L + +S D R+        A +TGR S      QN
Sbjct: 594 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 652

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388
           +P                                +R      S    ++ AD + IE RV
Sbjct: 653 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 688

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I  ++    AF NG DI+  T  K FN   D+V    R   K +             
Sbjct: 689 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 737

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+     SQ+                                +     +    
Sbjct: 738 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 764

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A   GV Q   D+ +           +  RR                          
Sbjct: 765 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 810

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                  + + +NT                   +Q  + DI+   M   ++         
Sbjct: 811 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 849

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P +        +  +M +       +PLK +      +
Sbjct: 850 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 899


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 194/652 (29%), Gaps = 128/652 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92
           + +      +    E       L+Q+L D+    + +++   +   +    LGI+I +  
Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + +       S+ +    ++           K  I  F KG     P +     H
Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +           +++  E + ++  L D E  L  +   + + G   D++ + +++  
Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           I ++   L  +I +   G   +      L + LF    + ++  ++    T   +L    
Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 D IL     +      +  L + +S D R+        A +TGR S      QN
Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388
           +P                                +R      S    ++ AD + IE RV
Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I  ++    AF NG DI+  T  K FN   D+V    R   K +             
Sbjct: 662 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+     SQ+                                +     +    
Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A   GV Q   D+ +           +  RR                          
Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNVNL-------------- 783

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                  + + +NT                   +Q  + DI+   M   ++         
Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P +        +  +M +       +PLK +      +
Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I     + D E +   D    S   S L     +  +    +N   + I  K    I++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391

Query: 90  SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142
              +   ++        SS    C       L+      +   GK +           D 
Sbjct: 392 -NMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y       V+      E    D+ +   LF  +      E  L  +   +   G ++D
Sbjct: 451 AEYMGQIICTVKETVPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
             ++ +L     +    L+++I +L+     +      L + LF    + ++  ++    
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318
           T   +L          D I             +  L   ++ +  R+  +      + TG
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   IA +  KLV 
Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E RVLA ++ ++  I+AF + EDI+  T ++ FN P++ V+ E R   K +   
Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                                                     A    +
Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +++ AK+  + +      E  +        ++                   
Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    ++K           +               +Q  + DI+   M N  
Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          ++L VHDE++ E  D     V  +    M    +    + L  +     
Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--IDVHLDVDLNVGS 876

Query: 672 RY 673
            +
Sbjct: 877 SW 878


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/640 (14%), Positives = 174/640 (27%), Gaps = 141/640 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++      L ++  +E ++   ++        KK LGI+     + C  + A      
Sbjct: 355 LAQEEENIKALKEFFENEDILKNGYSIKNALTALKK-LGIEFKGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKDGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  V   L   M         +PL  +    + + K
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 105/657 (15%), Positives = 197/657 (29%), Gaps = 137/657 (20%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWI 94
           +  D  V+ W   + S + + +   L D  +    H    ++++  +  L +++ +    
Sbjct: 390 SLSDGAVQQW---KPSEVLAKVGPLLSDAKLPKYTHALKDQQVVLSRADLNVEVRNV-VG 445

Query: 95  CTSVLARTNGL---PSSLKNACLALNFSEH-LTKMEEGKALIA--RFCKGSIDSPPYDCT 148
            T + + T        +L+     +        +   GK              + P+   
Sbjct: 446 DTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGFDQVAVAVAGPWAGE 505

Query: 149 RA-NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           RA              K   E T++L+       + E  L  +   +  RG  +D   + 
Sbjct: 506 RAGLAATLGPHMVAAAKAAGEQTQKLYA------EVELPLARVLARLERRGVLLDEAELQ 559

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +  + +  +   L   + +     +        L   LF   G+     ++    T    
Sbjct: 560 RQNDELGGQIDALKSTLQEEAGYAVD-PNSPKQLGKLLFEERGLPAKKKTKTGYSTDAQT 618

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
           L   ++      +IL+  + +      L+TL + V+ + GRL    +   A  TGR S  
Sbjct: 619 LEELSLLDPIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVA-ATGRLSSR 677

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +A  G +LV  D + 
Sbjct: 678 EPNLQNIP------------------------IRTEQGRRIRRGFVAPEGMQLVTLDYSQ 713

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++ +   +KAF +G D++  T A+ F  P  +V+ EQ               
Sbjct: 714 IELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQ--------------- 758

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                                            +A +  +         A +  +     
Sbjct: 759 -----------------------------RRVAKAVNFGVIYGQSAFGLARQLGIPQGRA 789

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
               KA+  K  GV      L +                                     
Sbjct: 790 GKYIKAYFKKIPGVSSYMNALIDTAKDTGFAET--------------------------- 822

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNG- 621
                    + G    +     +    R+YG ++     +Q  + DIL   M    +   
Sbjct: 823 ---------IFGRRRRIPELRRRGAVARSYGERIARNTPIQGSAADILKIAMVEVERLLD 873

Query: 622 ----YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++LTVHDE++ E        +  L    M K+ S    +PL  EG     +
Sbjct: 874 DKPWARMLLTVHDELIFECETDKVQELIGLVKPAMEKSAS--LDVPLLVEGGAGANW 928


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 197/672 (29%), Gaps = 137/672 (20%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
            +  +    +  +   ++A DDE   +           ++ + L +E +  + H+   + 
Sbjct: 313 TLSFYPLILEGEVKAVSFATDDESFFV------EVDDYEVFKLLDNEKLTLIGHDIK-DF 365

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIA 133
            +     GI++   ++  T+++        S  +        L       +   GK    
Sbjct: 366 FVNLSYHGIELN-CKFYDTAIMTYLLNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSK 424

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQ 192
           +           D   A              +D   +      +  L D  E  L  + +
Sbjct: 425 KSYDDIDKKLLIDYLCATAS------KLSKLKDKLMSFIKEMEMEELLDNVELPLVEVLK 478

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
           ++   G+ +D D++  L + I ++  K+ +DI         +   T  L  +LF    + 
Sbjct: 479 SMEVYGFTLDKDVLKDLSKEIGEKTDKIIKDIYDAAGYEF-NINSTKQLSEFLFDKLNLP 537

Query: 253 LVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +  ++    T   +L            I+            ++     +  D ++  T 
Sbjct: 538 PIKKTKTGYSTDMEVLVELIPYNEIVGEIIEYRQLMKLKSTYIDGFMPIMDKDDKVHSTF 597

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
           +   A  TGR S      QN+P                                +R   I
Sbjct: 598 KQTVA-ATGRISSTEPNLQNIP------------------------VRDEFGRRIRKAFI 632

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +S  G  +V AD + IE RVLA ++ +   I++F N EDI++ T ++ F    ++V+ E 
Sbjct: 633 SSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGEM 692

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +                    G+     S                         
Sbjct: 693 RRRAKAVNF--------------GIVYGISDYGLS------------------------- 713

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                   K+     +     +  +++GV      + +           ++ RR      
Sbjct: 714 -----RDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIPEIN 768

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +       G+   +NT                   +Q  + D
Sbjct: 769 S-----------------KNYNQRSFGERMAMNT------------------PIQGSAAD 793

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           I+   M               ++L +HDE++ +T       V  L   +M         +
Sbjct: 794 IIKMSMVKVYNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENVIK--LRV 851

Query: 662 PLKAEGYEAKRY 673
           PL  +    K +
Sbjct: 852 PLVVDIGYGKNW 863


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            A      I   + A+D E        E         Q L  ++V+ + H    +  L  
Sbjct: 327 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 382

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +          +    +++ +        SL                           + 
Sbjct: 383 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARL 426

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +           N +   +LF  Y                     ER L  +   + + G
Sbjct: 427 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 468

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253
             +D +++ +L +      + L+++I  L      +      L   LF   G+      +
Sbjct: 469 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCKF-NVASARQLGKLLFERMGLSSSAKKM 527

Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              S  T   +L   +       D +L     S      ++ L   V +  +   T    
Sbjct: 528 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 587

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                                +R   +A  
Sbjct: 588 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 623

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F         E R   
Sbjct: 624 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 681

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               +                                   
Sbjct: 682 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 701

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +           +   +  +    + +            +               
Sbjct: 702 ----GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 743

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+   S +  +     T      R            +Q  + D++ +
Sbjct: 744 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 782

Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
            M N       G  I+L VHDE++ E P++    V  L   +M    ++   +PLK +  
Sbjct: 783 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 839

Query: 669 EAKRY 673
               +
Sbjct: 840 VGSSW 844


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 100/629 (15%), Positives = 181/629 (28%), Gaps = 148/629 (23%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNACLAL 116
           + L+ +TV  V     ++       L ++     K      + +       S       L
Sbjct: 352 EILKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYEL-ETL 405

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             S   T +E  K       K  +          + ++                  L   
Sbjct: 406 FVSYLNTDIEAVKK-----DKKMVSVVLLKRLWDDLLRLID---------------LNSC 445

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                + ER L  +   +   G+++D D +L+  + I  +  KL+  I ++  G   +  
Sbjct: 446 QFLYENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKILKLETQIYQIA-GEWFNIN 504

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L           LIL+    +        
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQ 564

Query: 294 TLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L +A++   GR+  T    G + TGR +      QN+P                     
Sbjct: 565 GLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP--------------------- 602

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T
Sbjct: 603 ---VKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQT 659

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+ F   I  V+ E R+  K +   +                G+               
Sbjct: 660 AAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISDY------------ 693

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                               A   K+           +  ++  V +   ++        
Sbjct: 694 ------------------GLARDIKISRKEAAEFINKYFERYPKVKEYLDNIVRFARENG 735

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                 +                          R+    D+K                R+
Sbjct: 736 YVLTLFN--------------------------RKRYVKDIKSANRN----------ARS 759

Query: 593 YGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645
           Y  ++  N  +Q  + DI+   M    +          I+L VHDE++ E P      V 
Sbjct: 760 YAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVK 819

Query: 646 TLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            +    M      A  +PL  E  E   +
Sbjct: 820 RIVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            A      I   + A+D E        E         Q L  ++V+ + H    +  L  
Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +          +    +++ +        SL                           + 
Sbjct: 394 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARL 437

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           +           N +   +LF  Y                     ER L  +   + + G
Sbjct: 438 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 479

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253
             +D +++ +L +      + L+++I  L      +      L   LF   G+      +
Sbjct: 480 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCKF-NVASARQLGKLLFERMGLSSSAKKM 538

Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              S  T   +L   +       D +L     S      ++ L   V +  +   T    
Sbjct: 539 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 598

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                                +R   +A  
Sbjct: 599 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 634

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KLV AD + +E +++A IAG      AF+ G+DI++ T  + F         E R   
Sbjct: 635 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 692

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               +                                   
Sbjct: 693 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 712

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +           +   +  +    + +            +               
Sbjct: 713 ----GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 754

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+   S +  +     T      R            +Q  + D++ +
Sbjct: 755 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 793

Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
            M N       G  I+L VHDE++ E P++    V  L   +M    ++   +PLK +  
Sbjct: 794 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 850

Query: 669 EAKRY 673
               +
Sbjct: 851 VGSSW 855


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143
           +    +    + A       + K+        E       +   GK          +   
Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R  HV          +       ELF  L      E  L  +   +  +G ++D 
Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  + E +A   K+++++I KL      +      L + LF    + ++  ++    T
Sbjct: 513 ERLCNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            IL+           +  L + V  D  ++         ++TGR
Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G  +  
Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              A     + +     GV +  +D+ +          +    R   +P +  R      
Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               + G    ++L VHDE++ E P      +  L   +M      A  +PLK +     
Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGP 885

Query: 672 RY 673
            +
Sbjct: 886 TW 887


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAKRT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 200/691 (28%), Gaps = 133/691 (19%)

Query: 2   SKLFIDI-ETRSPQPLPKVGVWAYAEQAVITL----------CAYAWDDEPVKLWDRTEQ 50
            ++  DI  T          +        I              + +D E   + D    
Sbjct: 298 KQVSFDILPTFEYVDFNH--LDEAVIHFEIDGSNYLKDDILKFGF-YDKERYIVVDADNI 354

Query: 51  SAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              P +L+++L +E    V +++   F   +    L I+I +       + +       +
Sbjct: 355 KDYP-ELIKWLENENSKKVVYDAKKTF---VIAHRLNINIQNI-VFDAMLASYIFDPSRT 409

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           + +    +            K  ++ + KG     P       H+ +     +  K  +E
Sbjct: 410 IDDVYSVVTNYHQTY----VKEDVSIYGKGKKRHVPDTEILNTHIASITKSIDAVKPLME 465

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E  +++  L D E  L  +   + + G   D++ +  +Q+ + ++ + L + I    
Sbjct: 466 KELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAA 525

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L + LF    + ++  ++    T   +L          + IL     +
Sbjct: 526 GEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLQNEHPIINDILEYRQLA 584

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L + +S+D R+        A +TGR S      QN+P              
Sbjct: 585 KLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDPNLQNIP-------------- 629

Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R     S     ++ AD + IE RVLA I  +D   +AF +
Sbjct: 630 ----------IRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIH 679

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G+DI+  T  K F    ++V+   R   K +   + Y               L++ +   
Sbjct: 680 GQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYG-----ISDYGLSQSLNITRKEA 734

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
            +        +   + +   +          + L+           R     +     +L
Sbjct: 735 KIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNL 785

Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                   +      SA  +  +  +   +                              
Sbjct: 786 RGFAERTAMNTPIQGSAADIIKLAMVEFDKQ----------------------------- 816

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                             VQ  S            K    ++L VHDE++ E P +    
Sbjct: 817 ------------------VQHTS-----------YKAK--LLLQVHDELIFEVPKSEVEE 845

Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                  +M         +PLK +      +
Sbjct: 846 FSLFVEDIMEHALD--LDVPLKVDSNYGPTW 874


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 186/664 (28%), Gaps = 158/664 (23%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
           +A      I   + A+D E      + E         Q L  ++V+ V H++    ++ +
Sbjct: 323 YAKIADETINELSVAYDREHALTIRKEEVQNFMEVAKQILASDSVLKVVHDAK---LIMQ 379

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
               + +    +    +++ +        SL          +   KM    AL+      
Sbjct: 380 HFPDLGV----FDDVMLMSYSLDASSHDHSLTGMTYRYLHQKFPAKMAC--ALVQLHSVM 433

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                         + + +LF  Y                     ER L  +   + + G
Sbjct: 434 REK-----------LLSDRLFTVY------------------YQLERPLVRVLYEMQEVG 464

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253
             +D +++ +L        + L+ +I  L      +      L   LF   G+      +
Sbjct: 465 IEVDTEILKQLSRDFHGSIRSLEREIYGLAGCKF-NVASARQLGKLLFERMGLSSSTKKM 523

Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              S  T   +L   +       D +L     S      ++ L   V +      T    
Sbjct: 524 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSM 583

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            A+ TGR S      QN+P                                +R   +A  
Sbjct: 584 VATATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 619

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KLV AD + +E +++A IAG      AFA G+DI+  T  + F    D    E R   
Sbjct: 620 GHKLVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFG--DDVTDPELRRRA 677

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +                    G+     ++NV                          
Sbjct: 678 KSINF--------------GIIYGMSPFGLAKNV-------------------------- 697

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +         + +   +  +    + +            +               
Sbjct: 698 ----GITRQEATQYVEQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 739

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+     +      +        R            +Q  + D++ +
Sbjct: 740 ------------GRKCYVPGINSAQHAIRGFA---ERAAINAP------IQGTAADVVKK 778

Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYE 669
            M N         I+L VHDE++ E P++   +V  L   +M    S+   +PL+ +   
Sbjct: 779 AMINLRDKLEVGTIILQVHDELLVEVPESHVDNVAQLMKEVMEGVASF--SVPLRVDIGV 836

Query: 670 AKRY 673
              +
Sbjct: 837 GNSW 840


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 88/597 (14%), Positives = 165/597 (27%), Gaps = 127/597 (21%)

Query: 91  KRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYD 146
           K +   SV A           +++       S   +K    GK+ ++      +      
Sbjct: 393 KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLS----EVLKFNDEK 448

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +    +++           +       RL      E  L      + + G R+D   +
Sbjct: 449 AEKYFASESYVALFASDYLLKKLNELELTRLYENV--ELPLIYSLARMENTGVRVDEKRL 506

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKS 263
               + + ++  KL+  I+    G   +      L   LF    +           T   
Sbjct: 507 KDYADTLLEKISKLEASIIDKA-GESFNINSPKQLGEILFGKLKLSGGKKTKTGYSTAAD 565

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +         L+  +  DGR+ G+      + TGR S  
Sbjct: 566 VLEKLAPEHEIIRDILEYRQLTKLNSTYATGLAGYIRDDGRIHGSFNQT-ITATGRISST 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +   G   V AD + 
Sbjct: 625 DPNLQNIP------------------------VRTEMGSKIRDIFVPKPGYVFVDADYSQ 660

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++G++  I+++    DI+  T A+ F+ P+DKV+ E R   K +   + Y  
Sbjct: 661 IELRVLASMSGDEKLIESYHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVYG- 719

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +        + F+ +E  +           E      + G   
Sbjct: 720 ----ISAFGLSEDLSISRKEALDYINNYFKIYEGVKRFLDKQVADAKEKGYVKTMFGRIR 775

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +                                              
Sbjct: 776 PI---------PEIKSSNFMTRS------------------------------------- 789

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                      GD   +N+                       + DI+   M    +    
Sbjct: 790 ----------FGDRVAMNSPIQG------------------SAADIMKIAMIRVDEALNK 821

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                +IVL +HDE++ E      + V  +    M +  S    +PL+ + +  K +
Sbjct: 822 SGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREAVS--LKVPLEVDAHIGKTW 876


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +      +L+ 
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/661 (14%), Positives = 191/661 (28%), Gaps = 137/661 (20%)

Query: 30  ITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGI 86
           I   +   +             QS +     ++  DE+      +S   R +   +  GI
Sbjct: 336 ILGFSLVNETGH-YYIPKEIAVQSEI---FKKWAEDESQKKWVFDSK--RSVVALRWQGI 389

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           ++    +    + A      ++  +             ++  E          KG+  + 
Sbjct: 390 ELKGAEF-DALLAAYIINPANTYDDVASVAKDYGL-HIVSSDEAVYG------KGAKRAV 441

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P +   A H+       +  +  +    E   +L    + E  L L+   +   G ++D+
Sbjct: 442 PGENELAMHLVRKAAAVDSLREKLLQELENNDQLELYEELELPLALILGEMESIGVKVDV 501

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + ++ E +    K+ +E I ++      +      L + LF   G+ +V  ++    T
Sbjct: 502 GRLERMGEELGARLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKLGLPVVKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL            +  L + +  D     T      ++TGR 
Sbjct: 561 SADVLEKLADQHDIVSYILQYRQIGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   + S     +  A
Sbjct: 621 SSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKDWLIFAA 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA I+ ++  I+AF N  D++  T    F+   D+V+   R   K +    
Sbjct: 657 DYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNF-- 714

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+     SQN                                + 
Sbjct: 715 ------------GIVYGISDYGLSQN------------------------------LGIT 732

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   + +    +GV    ++  +          +   +R   +P L  R       
Sbjct: 733 RKEAAAFIERYLESFKGVKVYMEESVQEAKQKGYV--TTLMQRRRYIPELTSRNFNL--- 787

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                           + + +NT                   +Q  + DI+ + M +   
Sbjct: 788 ------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDMAA 817

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E P      +  L   +M         +PLK +      
Sbjct: 818 KLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEHA--LNLDVPLKVDFASGPS 875

Query: 673 Y 673
           +
Sbjct: 876 W 876


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +        +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEAVIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/652 (13%), Positives = 174/652 (26%), Gaps = 148/652 (22%)

Query: 32  LCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             + ++ +            + +   +   +  E V  +      +           I  
Sbjct: 337 GISLSFKEGEGYFISPFDFNNEIRKKIENIISSENVKKIGSYIQRDLHFL----NCKIKG 392

Query: 91  KRWICTSVLARTNGL---PSSLKNA-CLALNFSE-HLTKMEEGKALIARFCKGSIDSPPY 145
                 S+ +          SL       LN +     K               + S   
Sbjct: 393 D-VFDVSLASYLLNPERQNHSLDILIGEYLNKTSFIPQKY--------AGYLFPLKSILE 443

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           +  +   ++    F  Y                     E  L  +  ++   G ++D + 
Sbjct: 444 ERIKNEGLE----FVLYNI-------------------EIPLIPVLYSMEKWGIKVDKEY 480

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + +L +   +  KKL+E+I +L  G   +      L   LF    +      +    T  
Sbjct: 481 LKQLSDEFCERIKKLEEEIYELA-GTRFNLNSPKQLSEVLFERLKLPSGKKGKTGYSTSS 539

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           S+L +          IL            ++ +   V+   GR+       G + TGR S
Sbjct: 540 SVLQNLINAHPIVRKILQYRELYKLKSTYVDAIPNLVNPQTGRVHTKFNPTG-TATGRIS 598

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   ++ +G  LV  D 
Sbjct: 599 SSEPNLQNIP------------------------IKSEEGRKIRRAFVSEDGYFLVSLDY 634

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++ E   I AF  GEDI+  T ++ F  P ++V    R+  K +   + Y
Sbjct: 635 SQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNFGIIY 694

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                   +      + +          S F+ + + +        +  E      L G 
Sbjct: 695 G-----ISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGR 749

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +           +  + K +   +  +                              
Sbjct: 750 KRYI---------PEIKSINKQVRNAYERIA----------------------------- 771

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                      +            +L     Y  K  EN                     
Sbjct: 772 -----------INAPIQGTAADIIKLAMIEIY--KEIEN-----------------KNLK 801

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672
             I+L +HDE++ E P+        +    M K       +PL  E    K 
Sbjct: 802 SRILLQIHDELILEVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 851


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 188/662 (28%), Gaps = 139/662 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   +    D+       ++   +  +  L Q L D+ +     N  F+     +    L
Sbjct: 342 LEGFSLKVGDK----IYVSKDVVLLQETPLRQMLEDKKIKK---NV-FDIKRTYVGLHRL 393

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            ID     +    + +      ++  +     +           K  +  + KG   + P
Sbjct: 394 DIDAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YGDYSVKTDLEVYGKGKKKAVP 448

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            D     H+ A  +  E  K+ +    +  ++       E  +  +   +   G +++  
Sbjct: 449 EDDEFFEHLAAKVVVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEAS 508

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
           ++ +L    A + ++L+  I +       +      L   LF    +  +  ++    T 
Sbjct: 509 VLNQLGNDFALKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLNLPPIKKTKTGYSTS 567

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L    +       IL+    +      +  L E +  DGR+         + TGR S
Sbjct: 568 VEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDGRIHTRYLQT-LTATGRLS 626

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVA 379
                 QN+P                                +R   +    +G      
Sbjct: 627 SVDPNLQNIP------------------------TRTDEGKQIRKAFVPSTKDGYIF-SC 661

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438
           D + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +   
Sbjct: 662 DYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFG 721

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L                                        +
Sbjct: 722 IVY-----GISDYGLSKNL---------------------------------------GI 737

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +     +  ++  +        +           +                    
Sbjct: 738 SRKQAKTFIDNYFEQYPQIKDYMDKAIKEAREKGYAETIMH------------------- 778

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    D+      + +      R          + +Q  + DI+   M N  
Sbjct: 779 -------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQ 822

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          +VL VHDE++ + P     ++  +   +M    +    +PL A+     
Sbjct: 823 KKLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSAVT--LDVPLIADSNWGH 880

Query: 672 RY 673
            +
Sbjct: 881 NW 882


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/664 (13%), Positives = 180/664 (27%), Gaps = 144/664 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              +    D+       +    +  +  +   L DE +     N  F+     +    L 
Sbjct: 343 VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLD 394

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141
           I      +    + +      ++  +         ++S        GK           +
Sbjct: 395 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 453

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  ++ N +++ +       +D E        L      E     +   +   G ++
Sbjct: 454 LFNHLASKINAIESLKKPLLEKLKDHE-----QDDLFETI--EIPTARVLARMEMNGMKV 506

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           +   +++LQ   A + K+L++ I         +      L   LF   G+  +  ++   
Sbjct: 507 EASTLIQLQNEFAVKLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGY 565

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    +      +  L + + SDGR+         + TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQSDGRVHTRYLQT-LTATG 624

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 625 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 660

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
             D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K + 
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L                                       
Sbjct: 721 FGIVY-----GISDYGLSKNL--------------------------------------- 736

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  + +      +           +                  
Sbjct: 737 GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH----------------- 779

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+        T  S   R          + +Q  + DI+   M N
Sbjct: 780 ---------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAMIN 821

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             K          IV+ VHDE++ + P     ++  +   +M         +PL A+   
Sbjct: 822 MQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 879

Query: 670 AKRY 673
              +
Sbjct: 880 GHNW 883


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/664 (13%), Positives = 180/664 (27%), Gaps = 144/664 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
              +    D+       +    +  +  +   L DE +     N  F+     +    L 
Sbjct: 343 VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLD 394

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141
           I      +    + +      ++  +         ++S        GK           +
Sbjct: 395 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 453

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  ++ N +++ +       +D E        L      E     +   +   G ++
Sbjct: 454 LFNHLASKINAIESLKKPLLEKLKDHE-----QDDLFETI--EIPTARVLARMEMNGMKV 506

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           +   +++LQ   A + K+L++ I         +      L   LF   G+  +  ++   
Sbjct: 507 EASTLIQLQNEFAVKLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGY 565

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    +      +  L + + SDGR+         + TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQSDGRVHTRYLQT-LTATG 624

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       + 
Sbjct: 625 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 660

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
             D + +E RVLA ++G+    +AF  G DI+  T  K F+    D+V+   R   K + 
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L                                       
Sbjct: 721 FGIVY-----GISDYGLSKNL--------------------------------------- 736

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  + +      +           +                  
Sbjct: 737 GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH----------------- 779

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+        T  S   R          + +Q  + DI+   M N
Sbjct: 780 ---------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAMIN 821

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             K          IV+ VHDE++ + P     ++  +   +M         +PL A+   
Sbjct: 822 MQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 879

Query: 670 AKRY 673
              +
Sbjct: 880 GHNW 883


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/632 (14%), Positives = 177/632 (28%), Gaps = 145/632 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNA 112
             +   L  +++  V     ++       +  D     K      + +       S    
Sbjct: 346 EAIKDLLTLQSIQKVV----YDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRS---- 397

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             + +              I+                A  +            D+ + + 
Sbjct: 398 --SYDLETLF---------ISYLNTDIAAIKENRWAGATVLLRNLWDELSKLIDLNSAQY 446

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++ +      E  L  +   +   G+++D + + +  + I  +  KL+  I ++  G  
Sbjct: 447 VYESI------EMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIA-GEW 499

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF    + +V  ++    T   +L           LIL+    +    
Sbjct: 500 FNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILT 559

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                L +A++   GR+       G + TGR +      QN+P                 
Sbjct: 560 TYCQGLVQAINPATGRIHTNFIQTG-TATGRLASAEPNLQNIP----------------- 601

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI
Sbjct: 602 -------VKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDI 654

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T A+ F   I +V+   R+  K +   + Y              GL           
Sbjct: 655 HSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS---------DYGLSRD-------- 697

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                       K+           +  K+  V +   ++ +  
Sbjct: 698 ---------------------------IKISRKEAAEFINRYFEKYPRVKEYLDNVVKFA 730

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                          ++   +R+    D+K     L        
Sbjct: 731 RENG--------------------------FVLTIFNRKRYIKDIKSTNKNLRNYA---E 761

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           R          + +Q  + DI+   M    K          I+L VHDE++ E+P     
Sbjct: 762 RIAM------NSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815

Query: 643 SVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            V  +    M         +PL  E  E   +
Sbjct: 816 IVKEIVKSEMENAV--LLKVPLVVEVKEGSNW 845


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 178/662 (26%), Gaps = 138/662 (20%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRD-ETVMCVAHNS 73
           + G+    E   +   A  + +E +             +   + +      +V  +  + 
Sbjct: 321 EAGMQLVIENGQVAAMALCYGEEKIYSIPAAGFITGEYLAERMEELCTAVPSVSVL--DL 378

Query: 74  LFERILFKKTLGIDIPS-------KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHL 122
             +    K      +         +      V               +     L+ +   
Sbjct: 379 KPQLPYLKNRDRRVVDGSGNDGGSEAMFDAGVAGYLLNPLKDTYDYDDLARDYLDMTVPS 438

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                GK         + D  P          A+  +    +   +      ++L    D
Sbjct: 439 KADLMGKT----SFTAAFDMMPDKAQTCVCYMAYVAWKAKPELVKKLEASGMRKLF--FD 492

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  +      + + G  +  + +    E +  +  KL+++I + T+    +      L 
Sbjct: 493 IEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDTETEF-NINSPKQLG 551

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    +     ++    T   +L            +L+    +       + L+  +
Sbjct: 552 EILFDRMKMPGGKKTKTGYSTAADVLEKLAPEYPVVRKVLDYRQLTKLKSTYADGLAAFI 611

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DGR+ GT      + TGR S      QN+P                            
Sbjct: 612 REDGRIHGTFNQT-ITATGRISSTEPNLQNIP------------------------VRME 646

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +   G  L+ AD + IE RVLA ++G++  I A+   EDI+  T ++ F+ 
Sbjct: 647 LGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITASEVFHV 706

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+++V+  QR   K +   + Y               L + +          FE + + +
Sbjct: 707 PLEEVTPLQRRNAKAVNFGIVYG-----ISAFGLSEDLSISRKEALEYINRYFETYPEVK 761

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                + +   E    + + G    +           +                      
Sbjct: 762 KFLDHLVELGKEQGYVETMFGRRRPI---------PELKSANFMQRS------------- 799

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                              G+   +N+                 
Sbjct: 800 ----------------------------------FGERVAMNSPIQG------------- 812

Query: 600 NIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652
                 + DI+   M          K    +VL VHDE++ ET       V   L   M 
Sbjct: 813 -----TAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKVLEEEMK 867

Query: 653 KN 654
             
Sbjct: 868 NA 869


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +      +L+ 
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/672 (13%), Positives = 188/672 (27%), Gaps = 118/672 (17%)

Query: 12  SPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           S        +    E    A I   +    D+   L            +   L  + V  
Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
              +   + +   + LG+ +    +    +++       +  +    L   +H     E 
Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKINF-DLLLVSYLLDNSENSNDLG--LLAQQHEYYDVES 438

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
              I          P        H+          K  +    E  ++L   +  ER L 
Sbjct: 439 DEQI-YGKGAKHAVPEDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLS 497

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           ++   +   G ++D + +  +Q  + +   +L+++I         +      L + LF  
Sbjct: 498 IILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEK 556

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304
             + ++  ++    T   +L          D IL     +      +  L + VS  DG+
Sbjct: 557 LKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGK 616

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
                     + TGR S      QN+P                                +
Sbjct: 617 AHTRYTQT-LTSTGRLSSVDPNLQNIP------------------------VRLEEGRKI 651

Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-ID 422
           R   +    G ++  +D + IE RVLA I+ +    +AF  G DI+ +T  + FN    D
Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +   + Y               + + +        +  + +   + + 
Sbjct: 712 EVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
             + +   E    + +            R     +     +L                  
Sbjct: 767 EKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFNLRSFAER------------ 805

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                              + +N+             K+    +
Sbjct: 806 -----------------------------------TAMNSPIQG---SAADIIKVAMINM 827

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           Q    ++L E           ++L VHDE++ E P      +  +   +M         +
Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876

Query: 662 PLKAEGYEAKRY 673
           PLK E    + +
Sbjct: 877 PLKVESKHGQTW 888


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELHGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDILMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 199/659 (30%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D D +
Sbjct: 457 VVAEH-VARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/681 (14%), Positives = 169/681 (24%), Gaps = 157/681 (23%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
             +   A +      +            A  + L  +L D     + H+     +  ++ 
Sbjct: 336 GELAGLALSVGAGHGRFIPLHCEGGLGEAGLAKLRPWLEDPKRYKLGHDCKASWVALRR- 394

Query: 84  LGIDIPSKRWICTSVLARTNGL----PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKG 138
            G+ +       T + +         P  L       L  +    K   G          
Sbjct: 395 KGVALAGI-VGDTMIESFLVEPNKLIPHRLDQLTKEYLQRTIPPQKRILGSG-------- 445

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLW 188
                     +       +    +C   VEA    F  +    D E            L 
Sbjct: 446 -------KRLKRFSQLDAEALAPWCCTQVEAVAAAFVEIRERLDAEGHRDTLEQVSLPLS 498

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G  ID + + K+ E   +   KL++ I ++      +   +  L   LF  
Sbjct: 499 WVLGQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEIAGREF-NIASSKQLGAVLFDE 557

Query: 249 TGID---LVDMSEGTLKSILSHSNIT-----QLAKDLILNRLASSGSAILKLNTLSEAVS 300
             +           T   +L                 +L     +       + L  AV+
Sbjct: 558 LELPVIKRTKTGYSTNAEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVN 617

Query: 301 SD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            D GR+  T Q   A  +GR        Q  P                            
Sbjct: 618 PDSGRIHATFQQT-AGVSGRLITTEPDLQRTP------------------------IKTP 652

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               VR   +   G KL+ AD + IE R+LA  + +   ++AFA G D++  T A+ F  
Sbjct: 653 EGKRVRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEV 712

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                                  GG +         G                    +  
Sbjct: 713 ----------------------GGGPEKVSREQRGVG--------------------KLV 730

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           +                K+     +     + A + GV                      
Sbjct: 731 NFATIYGQGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQA----------- 779

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                            D  +     RR    ++  +      A     R          
Sbjct: 780 ---------------NVDGFVETLLGRRRYIPELSSNNWQDRQAG---ERIA------AN 815

Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
             +Q  + DI    M        A K    ++L +HDE+V E P     +V  +    M 
Sbjct: 816 TPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQME 875

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
                   +PL  +      +
Sbjct: 876 SVVE--LRVPLVVDVGVGDTW 894


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 188/667 (28%), Gaps = 152/667 (22%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A    IT   YA+ DE V  + +TE + +   L + L  ET+  +  N+    +      
Sbjct: 338 ARNGKITEILYAFQDESVYSY-KTENNKIADALKEILESETIEKLFINAKESSLALL-CA 395

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140
           GI++ +  +    +        SSL +        L+                       
Sbjct: 396 GIEVKNISFE-PLLAYYLLQPSSSLPDLEEIFSRELDIGMQEFS---------------- 438

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGY 199
                     + + A +    +  RD+   +     L  L    E  L  +   +   G 
Sbjct: 439 ---------QDQILAVETIKLFKLRDILIKKLKDDSLYDLFKNMELPLIKVLAQMEYNGV 489

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDM 256
           +ID D + +L + + +  + + +   +L      +      L   LF   G+        
Sbjct: 490 KIDKDWLQQLSDKLEKRLEIITKKAHELAGEDF-NLNSPKQLGEILFEKLGLPVIKRTKT 548

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGAS 315
              T  ++L           LI      +      +++L   ++   G++  +      +
Sbjct: 549 GYSTNANVLEKLEGKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKIHTSFNQMV-T 607

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374
            TGR S      QN+P                                +R   I S +  
Sbjct: 608 ATGRLSSTNPNLQNIP------------------------IRTEEGREIRKAFIPSSDNM 643

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+  D + IE RV A ++G+    +AF +G DI+  T ++ F    ++VS   R   KV
Sbjct: 644 ILLAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKV 703

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +                    G+                                   + 
Sbjct: 704 IN--------------FGLAYGMS------------------------------AYGLSQ 719

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +     +     +  +  GV +   +  +                            
Sbjct: 720 DLDIPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLY---------------- 763

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      R+    ++           S   R            VQ  + DI+ + M
Sbjct: 764 ----------GRKRYIPEINSSN---YHRRSFAERSAI------NTPVQGTAADIMKKSM 804

Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEG 667
            +            +I+L VHDE+V E  +         +   M         +PL  + 
Sbjct: 805 LDVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDKMEAAAE--LDVPLLVDL 862

Query: 668 YEAKRYR 674
             A+ +R
Sbjct: 863 QIAENWR 869


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +      +L+ 
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/633 (13%), Positives = 170/633 (26%), Gaps = 130/633 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112
           +L   + +  ++    N   + IL K+ LGI +   ++    +++       +   L   
Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTKF-DFLLVSYLLDTTDNDNELATL 429

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +      +   GK       +       +   +A+ +   +       ++ E T  
Sbjct: 430 AQRFDLYMTSDEDIYGKGAKFAIPEDDARVLAHLANKADILMQVEQSAFDALQEHEQTHL 489

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                   ++ E  L  +   +  +G +ID   +  +   +      +++ I  +  G  
Sbjct: 490 -------YTEIELPLAQVLADMEYQGIKIDQKRLRDIGSDLEGRIHAIEDAIY-IEAGEK 541

Query: 233 RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+           T   +L          D IL     +    
Sbjct: 542 FNINSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVDHILQYRQLAKLKS 601

Query: 290 LKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +  L   V   D ++         ++TGR S      QN+P                 
Sbjct: 602 TYVEGLLTVVHDQDSKIHTRFLQT-LTQTGRLSSVDPNLQNIP----------------- 643

Query: 349 RGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R+  +      ++V AD + IE RVLA + G+    +AF NGED
Sbjct: 644 -------MRTEEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGED 696

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T    F    D                                 G+     + N  
Sbjct: 697 IHAETARAVFGLKDDAPVDALMRR-------------TAKAVNFGIVYGISDFGLANN-- 741

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                         +     +     +  +   +      + E 
Sbjct: 742 ----------------------------LGISRGEAKSFIDTYFKEFPQIHAWMAKIKEI 773

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                           +   + RR    ++      L +     
Sbjct: 774 AHEQG--------------------------FVETIAKRRRYLPEIGSKNFNLRSFA--- 804

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPY 641
            R          + +Q  + DI+   M               ++L VHDE++ E P    
Sbjct: 805 ERTAM------NSPIQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEI 858

Query: 642 FSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  L  ++M         +P++ E +    +
Sbjct: 859 QELTELVTNVMDSAV--VLDVPMRVESHYGNTW 889


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 169/656 (25%), Gaps = 142/656 (21%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL---FERILFKKTLGIDI 88
             + A  D        T      S +++ L         H +L   ++   +     +  
Sbjct: 343 GFSVAVAD-KTYYLPIT-GENELSKIMELLT-------GHQALTVVYDAKTWHNLSAVAS 393

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                   S+ A       +         +            ++    K        +  
Sbjct: 394 D-TAVFDVSLAAYLLDPLEN--------GYPPQKLAARYLDRILPEEPKKKKGEAVCNRD 444

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            +       L+  Y   D +        L      E  L      +   G  +DL  +  
Sbjct: 445 FSCAAV-RTLYDLYPLLDEKLKEASLDHLYEDL--ELPLAYTLARMERTGVAVDLQALDA 501

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           ++    +    L+++I  L      +      L   LF   G+  +  ++    T   +L
Sbjct: 502 MKTEFRERIGALEQEIYSLAGEEF-NLNSPKQLGQILFDKLGLPALKKTKTGYSTDAKVL 560

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                       IL            L  LS+ V+   GR+         + TGR S   
Sbjct: 561 EELAPHHEVVAKILKYRTLIKILTTYLEGLSKLVNEQTGRIHTHFNQTV-TATGRLSSTE 619

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P                                VR   +    G  L+ AD + 
Sbjct: 620 PNLQNIP------------------------IRLEEGRRVRRAFVPGKKGNLLLSADYSQ 655

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++ +   I +F   EDI+  T A+ F    + V+ E R   K +   + Y  
Sbjct: 656 IELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIVYGI 715

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL                                     + K+     
Sbjct: 716 S---------DYGLS-----------------------------------QQLKIPRQEA 731

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     +  +  GV     ++ E           ++                        
Sbjct: 732 KEYISRYFERLPGVRDFIHNVVEDAKKNGYVTTLLN------------------------ 767

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RR    D+        +      R            +Q  + DI+   M    +    
Sbjct: 768 --RRRYLPDINAKNFNQRSFA---ERTAM------NTPIQGTAADIIKLAMLRVEEALAG 816

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                +VL VHD++V E  +    +V  L    M      A  +PL  +      +
Sbjct: 817 MDDVQMVLQVHDDLVFEVKEESLINVARLVKKQMESALELA--VPLTVDVKAGLNW 870


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 150/686 (21%), Positives = 228/686 (33%), Gaps = 130/686 (18%)

Query: 6   IDIETRSP--QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
            D ET       +  +GV AY           ++             S  P +       
Sbjct: 25  FDTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNFV--GHPSECPWE-----EF 77

Query: 64  ETVMCVAHNSLFERILFKK--TLGI---DIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
              + ++HN+ F+R +F +   LGI    I  + W  ++ LA     P +L  A   L  
Sbjct: 78  NDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL-L 136

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RL 177
            E   K       I    KG                       Y   D     EL+    
Sbjct: 137 GEKPNK------AIRDAMKGIQGGLLCHDKAVLD---------YALDDARLACELWISHC 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 ER L  L     + G  +D   + +  E + Q R     +   L          
Sbjct: 182 DKWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVRDD---EATNLPWFPRLKPSS 238

Query: 238 TYALRMYLFLITGIDLVDMSEGTL---KSILSHSNITQLA-KDLILNRLASSGSAILKLN 293
             A          I + + +       +  +          K +   R A+    +  L 
Sbjct: 239 PKAFAEACQQAR-IPIPNSTSEDDPQTQEWIERYGERYPWLKHMSEWRKANRMLKV--LE 295

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC-VFQPQNLPRQERSEEILTQTIQALNRGET 352
           T+      DG L   L+++GA  TGRW+G      QN  R+                   
Sbjct: 296 TMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYGVDP------------ 343

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       R C++A  G KL++ADL+ IE RVLAWIAG+        NG  IY   
Sbjct: 344 ------------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAH 391

Query: 413 ---YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                      + K +     + K   + LGY  G K F+++A   GL++          
Sbjct: 392 AETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSIGEA----- 446

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                             +     +R  +  ++ LW+ + +   
Sbjct: 447 ----------------------------------KRTVDDFRKANPRIVSLWQAVEDSMR 472

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
             +                           + LPS R + Y DV+ +     T      R
Sbjct: 473 YHI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRR 510

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
              YGGKLTEN+VQA +RD+  EG+    K G  I+ TVHDE++ E P+    +V T+  
Sbjct: 511 LHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVTD 570

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L+ + P W  GLP+ AEG E   Y K
Sbjct: 571 LLAQTPDWIPGLPVAAEGIETSCYTK 596


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/632 (14%), Positives = 177/632 (28%), Gaps = 145/632 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNA 112
             +   L  +++  V     ++       +  D     K      + +       S    
Sbjct: 346 KAIKDLLTLQSIQKVV----YDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRS---- 397

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             + +              I+                A  +            D+ + + 
Sbjct: 398 --SYDLETLF---------ISYLNTDIAAIKENRWAGATVLLRNLWDELSKLIDLNSAQY 446

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++ +      E  L  +   +   G+++D + + +  + I  +  KL+  I ++  G  
Sbjct: 447 VYESI------EMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIA-GEW 499

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF    + +V  ++    T   +L           LIL+    +    
Sbjct: 500 FNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILT 559

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                L +A++   GR+       G + TGR +      QN+P                 
Sbjct: 560 TYCQGLVQAINPATGRIHTNFIQTG-TATGRLASAEPNLQNIP----------------- 601

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI
Sbjct: 602 -------VKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDI 654

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T A+ F   I +V+   R+  K +   + Y              GL           
Sbjct: 655 HSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS---------DYGLSRD-------- 697

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                       K+           +  K+  V +   ++ +  
Sbjct: 698 ---------------------------IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFA 730

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                          ++   +R+    D+K     L        
Sbjct: 731 RENG--------------------------FVLTIFNRKRYIKDIKSTNKNLRNYA---E 761

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
           R          + +Q  + DI+   M    K          I+L VHDE++ E+P     
Sbjct: 762 RIAM------NSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815

Query: 643 SVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            V  +    M         +PL  E  E   +
Sbjct: 816 IVKEIVKSEMENAV--LLKVPLVVEVKEGSNW 845


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/648 (14%), Positives = 180/648 (27%), Gaps = 149/648 (22%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICT 96
           D+       T    +  ++   L+ +TV  V     ++       L ++     K     
Sbjct: 335 DQESNTVFVTRDGHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDV 386

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + +       S      +                  R  K  +            ++  
Sbjct: 387 MIASYVLDSTRS------SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLI 440

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                           L        + ER L  +   +   G+++D D +L+  + I  +
Sbjct: 441 D---------------LNSCKFLYENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESK 485

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             KL+  I ++  G   +      L   LF    + ++  ++    T   +L        
Sbjct: 486 ILKLETQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL+    +         L +A++   GR+  T    G + TGR +      QN+P 
Sbjct: 545 IVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP- 602

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +   G  L+ AD + IE R+LA I
Sbjct: 603 -----------------------VKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHI 639

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  I AF N  DI+  T A+ F   I  V+ E R+  K +   +             
Sbjct: 640 SEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIV------------ 687

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A   K+           +  
Sbjct: 688 --YGISDY------------------------------GLARDVKISRKEAAEFINKYFE 715

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +   +  +                                 ++   +R+    D
Sbjct: 716 RYPKVKEYLDNTVKFARDNG--------------------------FVLTLFNRKRYVKD 749

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           +K     L        R          + +Q  + DI+   M    +          I+L
Sbjct: 750 IKSTNRNLRGYA---ERIAM------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIIL 800

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P      V  +    M      A  +PL  E  E   +
Sbjct: 801 QVHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/684 (14%), Positives = 189/684 (27%), Gaps = 152/684 (22%)

Query: 17  PKVGVWAYAEQAVIT------------LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ++G+ A  E   I                YA ++             +P  L + L  E
Sbjct: 310 TEIGLIAAIEDGNILTKRIVRLYLLADSITYAVEE-----------ENIPK-LKELLERE 357

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEH 121
            V    +N   E    K   GI +P   +  + +              +   +       
Sbjct: 358 NVFIYGNNLKREYTALK-PYGITLPKISF-DSQLAQYILNPSEVEQEPEKIGIKYGMPIV 415

Query: 122 L--TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               +   GK            +               +     K       E  K L  
Sbjct: 416 SPNLEDLLGKGKKR---MSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQEEDTKFLFE 472

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E  L  +   +   G  ++ D++ +L++  A+   + +++I  L      +     
Sbjct: 473 KI--ELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAGEEF-NINSPK 529

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   IL            IL+    S      +  L 
Sbjct: 530 QLGVVLFEKLQLPVIKKTKTGYSTGAEILEKLYDKHPIISKILSYRQVSKLQSTYVIGLL 589

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
             ++   +   +      + TGR S      QN+P                         
Sbjct: 590 SLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIP------------------------V 625

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +A  G  LV AD + IE RVLA +A E   I+ F    DI+  T ++ 
Sbjct: 626 RTEMGRELRKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEV 685

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F+ P+++V+KE R+  K +   + Y                                   
Sbjct: 686 FSVPVEEVTKELRSAAKAVNFGIVYGISDFGLSNN------------------------- 720

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                                +     +     + A++ G+      + +    +     
Sbjct: 721 -------------------LNITKKQAKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTT 761

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                        RR    ++K     +     +L         
Sbjct: 762 L--------------------------CGRRRYIPEIKSSNFIVKNMGKRL--------- 786

Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649
                +Q  + DI+   M          K   ++VL VHDE++ E  +     V   +  
Sbjct: 787 AMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDELLLEVREDDAKYVRDKVIE 846

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           LM     W+  +PLK +      +
Sbjct: 847 LMEGA--WSMDVPLKVDATIGDSW 868


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/630 (14%), Positives = 179/630 (28%), Gaps = 146/630 (23%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + + L+ E+V  V     ++         L      +      + +       S      
Sbjct: 350 IEEILKSESVKIV-----YDLKNMFHELYLENTDNIRNCEDVMIASYVLDSTRS------ 398

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +                          +   +  + +      +  E    ++ +  +L 
Sbjct: 399 SYELETLFMSYL---------------NTDLEAVKKDKKVTSVILLERLWDELSSLIDLN 443

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                 ++ ER L  +   +   G+++D D +L+  + I  +   L++ I ++  G   +
Sbjct: 444 SCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIA-GEWFN 502

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L   LF    + ++  ++    T   +L           LIL+    +      
Sbjct: 503 INSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY 562

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
              L +A++   GR+  T    G + TGR +      QN+P                   
Sbjct: 563 CQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP------------------- 602

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+ 
Sbjct: 603 -----VKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHS 657

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T A+ F   ID V+ E R+  K +   +                G+             
Sbjct: 658 QTAAEIFGVDIDDVTPEMRSQAKAVNFGIV--------------YGISDY---------- 693

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A   K+           +  ++  V +   ++ +    
Sbjct: 694 --------------------GLARDIKISRKEAAEFINRYFERYPKVKEYLDNIVKFARE 733

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                   +                          R+    D+        +      R 
Sbjct: 734 NGYVLTLFN--------------------------RKRYIKDINSTNRNTRSYA---ERI 764

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                    + +Q  + DI+   M    +          I+L VHDE++ E P      V
Sbjct: 765 AM------NSPIQGSAADIMKLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIV 818

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             +    M      A  +PL  E  E   +
Sbjct: 819 KRIVKTEMENAV--ALKVPLVVEVKEGLNW 846


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++         + +       ++L +  +     ++    +  K   G+D
Sbjct: 345 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   ++ +               R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/648 (14%), Positives = 183/648 (28%), Gaps = 149/648 (22%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICT 96
           D+       T    +  ++L+       + +    +++       L ++     K     
Sbjct: 335 DQESNTVFITSNKLLIEEILK----SDTVKI----MYDLKNIFHQLNLEDTNNIKNCEDV 386

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + +       S       L  S   T +E  K       K  +            ++  
Sbjct: 387 MIASYVLDSTRSSYEL-ETLFVSYLNTDIEAVKK-----DKKIVSVVLLKRLWDELLRLI 440

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                           L        + ER L  +   +   G+++D D +++  + I  +
Sbjct: 441 D---------------LNSCQFLYENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENK 485

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             KL+  I ++  G   +      L   LF    + ++  ++    T   +L        
Sbjct: 486 ILKLETQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL+    +         L +A++   GR+  T    G + TGR +      QN+P 
Sbjct: 545 IVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP- 602

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +   G  L+ AD + IE R+LA I
Sbjct: 603 -----------------------VKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHI 639

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  I AF N  DI+  T A+ F   I  V+ E R+  K +   +             
Sbjct: 640 SEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIV------------ 687

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A   K+           +  
Sbjct: 688 --YGISDY------------------------------GLARDIKISRKEAAEFINKYFE 715

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +   +  +                                 ++   +R+    D
Sbjct: 716 RYPKVKEYLDNTVKFARDNG--------------------------FVLTLFNRKRYIKD 749

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           +K     L        R          + +Q  + DI+   M    +          I+L
Sbjct: 750 IKSTNRNLRGYA---ERIAM------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIIL 800

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P      V  +    M      A  +PL  E  E   +
Sbjct: 801 QVHDELLIEAPYEEKDIVKEIVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 15/332 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M KL ID+ET S   L K GV+ YAE     I L AY+ DD  VK+ D +    +P ++L
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D+++   A N+ FER+   + LG  +  + W CT + +   GLP SL+     L  
Sbjct: 61  SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174
                KM EGKALI  F   CK +  +        +H ++ W  F EY +RDVE   E+ 
Sbjct: 121 --DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIK 178

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           K+L   P+   E + + +DQ INDRG  ID  LV    +     R++  +  ++LT    
Sbjct: 179 KKLSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTGLE- 237

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L+ +L    G+++  +++  ++S L ++      K+++  R   S S++ K 
Sbjct: 238 -NPNSPMQLKEWLNEK-GLEIDSLAKKDVESALKNAEGD--IKEVLELRQELSKSSVRKY 293

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           + +     +D R+RG LQFYGA+RTGR+    
Sbjct: 294 DAMKNVKGNDKRVRGLLQFYGANRTGRYCLTG 325



 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 116/411 (28%), Positives = 175/411 (42%), Gaps = 67/411 (16%)

Query: 281 RLASSGSAILKLNTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                 +  +    +   A++  G         G       SG + Q QNL R    +  
Sbjct: 592 HQIQRKAKKIDYTGMVYCAMTPTGFFLVRRN--GRVWVTGNSGRLIQVQNLRRNNLQDLD 649

Query: 340 LTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
           L +++      E+       P  + S  +R+  I   G + +V+D + IEARVLAW+AGE
Sbjct: 650 LARSLVRNKEYESLEMLYDSPSDVLSQLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGE 709

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           DW + AF NGEDIY +T ++ F  P     V+ + R  GKV  LA GY G     K M  
Sbjct: 710 DWVLNAFKNGEDIYCSTASQMFGVPVVKHGVNGDLRQKGKVATLACGYGGSVGALKAMG- 768

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                                  A++  L     + +  +WR  
Sbjct: 769 ---------------------------------------AIEMGLSEDELQSIVDSWREA 789

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
           +  ++ LW D+      VV+       R       LV+   K  + I LPS RRL Y   
Sbjct: 790 NPNIVSLWWDIDSVVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKA 843

Query: 574 KGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           K   +     +         ++  +  +YGGK  ENIVQAI+RDIL E M    K G++I
Sbjct: 844 KIGMNRFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNI 903

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V+ +HDE+V E+  +       +  +M+  PSWA GL L A+G+E++ Y+K
Sbjct: 904 VMHIHDEVVIESDSSSIEE---INEIMSLVPSWAPGLILDADGFESEFYKK 951


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++         + +       ++L +  +     ++    +  K   G+D
Sbjct: 345 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   ++ +               R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 190/660 (28%), Gaps = 132/660 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       D   V + +  + +  P +L+++L ++      +++      + +   ++
Sbjct: 331 ADILKFGIQADGHFV-VINAEQINDYP-ELVEWLENDQTRKRVYDAK---KTYAEAHRLN 385

Query: 88  IPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPP 144
           I  K       + +       S+ +    ++        +         +      +   
Sbjct: 386 IDIKNVSFDIMLASYILDPSRSIDDVYSVVHNYGQNYVAEEVNIYGKGRKRQIPEDEVLD 445

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                     +      Y + +     +LF+ L      E  L  +   + + G   D+D
Sbjct: 446 TYIASILDAISESTPIMYDQLEEFNQLDLFESL------ELPLARILGEMEELGIYTDVD 499

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            + ++++ I  +   L   I         +      L + LF    + ++  ++    T 
Sbjct: 500 ELKEMEKEIQGKLDTLITRIHDAAGEDF-NINSPKQLGVVLFENLKLPVIKKTKTGYSTA 558

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L          D IL     S      +  L + + +D R+        A +TGR S
Sbjct: 559 VDVLEQLQGEHPIIDDILEYRQLSKLQSTYIEGLQKVIQNDHRIHTHFNQTLA-QTGRLS 617

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380
                 QN+P                                +R        G  ++ AD
Sbjct: 618 SVDPNLQNIP------------------------VRLEEGRRIRKAFKPAEPGNVILSAD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA I  ++  IKAF  G DI+  T  K F    D+V    R   K +     
Sbjct: 654 YSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRRQAKAVNF--- 710

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     SQ+                                +  
Sbjct: 711 -----------GIVYGISDYGLSQS------------------------------LGITR 729

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
            A +     +     GV Q   D+ +      +        R   +P +  R   R    
Sbjct: 730 KAAKQFIDDYLDSFPGVKQYMSDIVKDAK--AKGYVETLLHRRRYIPDITSRNFNR---- 783

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                          + + +NT                   +Q  + DI+   M N  K 
Sbjct: 784 -----------RSFAERTAMNT------------------PIQGSAADIIKLAMVNFDKE 814

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE++ E P+    +    +  +M         +PL+ +      +
Sbjct: 815 IKNKDFHAHLLLQVHDELIFELPEEEVEAFSAFIEDIMDNAID--LDVPLQVDTNYGPTW 872


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/644 (13%), Positives = 178/644 (27%), Gaps = 133/644 (20%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
            D  ++      L   L+ ++V     N+  + +   + LGI + +  +    + +    
Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENINF-DLLLASYLLN 411

Query: 105 LPSSLKNA---CLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
              +  +         + +    +   GK             P  D T  +H+       
Sbjct: 412 TNDNSNDLGQVAQEHGYDDVRTDEEVYGKGAKR-------AVPDDDETFFSHLATKARAI 464

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           E  ++D+ A  +  K+    +D E  L  +   +   G  +D   +  +   + +   ++
Sbjct: 465 EQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEI 524

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277
           +  I +       +   T  L   LF    + ++  ++    T   +L          + 
Sbjct: 525 ESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQ 583

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           IL     +      +  L + + S+ +   T      ++TGR S      QN+P      
Sbjct: 584 ILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP------ 637

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396
                                     +R   +    G ++  +D + +E RVLA I G+ 
Sbjct: 638 ------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDK 679

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              + F NGEDI+ +T  + F+   D                                  
Sbjct: 680 NLQEDFKNGEDIHASTARRIFHLAPD---------------------------------- 705

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                     +         +A +  +         A +  +         + +  +  G
Sbjct: 706 ---------AEIDRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPG 756

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +   D                                          RR    D+   
Sbjct: 757 VKKYINDTIAFAKENGYVETITH--------------------------RRRYLPDIHAK 790

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630
                +   +               +Q  + DI+   M               ++L +HD
Sbjct: 791 SFNKRSFAERT---------AMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHD 841

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E P      +  L   +M         +PLK +      +
Sbjct: 842 ELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/659 (13%), Positives = 171/659 (25%), Gaps = 137/659 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I     A  D+            +       ++       +  ++       +K     
Sbjct: 326 DIIGFGIATPDQ----IYVASAELVDDPAFRDWIES-DHQKICLDAKQAAFALRKH---G 377

Query: 88  IPSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +    +    +      L     L +            +   GK          +  P  
Sbjct: 378 LKLTAFDDLLLAGYLLNLSGGTTLASIAGHYMLMAPNEEAVLGKGAKRLAPADDVLHPYL 437

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                     +    E  +       EL++ L      ER L  +   +   G R+D+  
Sbjct: 438 AEKARMIELLFPKVKE--ELKANQQFELYETL------ERPLSGVLAEMEWTGIRVDVGT 489

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + ++Q  +A     L++ I         +      L + LF    +     ++    T  
Sbjct: 490 LQEMQHDLAGRLHDLEQLIYGEVGEEF-NINSPKQLGVILFEKMELPAFKKTKTGYSTAA 548

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L          D I+            +  L + +  DG++        A +TGR S 
Sbjct: 549 DVLEKLRPLHPVIDHIMLYRELQKLQSTYVEGLQKVIKEDGKIHTRFAQTIA-QTGRLSS 607

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  L  AD 
Sbjct: 608 VNPNLQNIP------------------------VRIEEGRKIRKAFVPSEPGWSLYAADY 643

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RV+A ++ +   ++AF +  DI+  T +  F    + V+   R   K +   +  
Sbjct: 644 SQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFGII- 702

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 703 -------------YGISDYGLSQN------------------------------LNISRK 719

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     +      +        E                              +  + 
Sbjct: 720 EAQDFIDRYFELFPQIKLFMDAAIEKAR--------------------------MNGFVE 753

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
              +RR    D+      L        R            +Q  + DI+ + M +     
Sbjct: 754 TLMNRRRNIPDINSKNFNLRGFA---ERTAI------NTPIQGSAADIIKKAMLDVHAAL 804

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E PD    ++ TL    M +       +PL+ +G     +
Sbjct: 805 EQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQTVQ--LSVPLRVDGDAGHSW 861


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/672 (13%), Positives = 188/672 (27%), Gaps = 118/672 (17%)

Query: 12  SPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           S        +    E    A I   +    D+   L            +   L  + V  
Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
              +   + +   + LG+ +    +    +++       +  +    L   +H     E 
Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKINF-DLLLVSYLLDNSENSNDLG--LLAQQHEYYDVES 438

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
              I          P        H+          K  +    E  ++L   +  ER L 
Sbjct: 439 DEQI-YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLS 497

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           ++   +   G ++D + +  +Q  + +   +L+++I         +      L + LF  
Sbjct: 498 IVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEK 556

Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304
             + ++  ++    T   +L          D IL     +      +  L + VS  DG+
Sbjct: 557 LKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGK 616

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
                     + TGR S      QN+P                                +
Sbjct: 617 AHTRYTQT-LTSTGRLSSVDPNLQNIP------------------------VRLEEGRKI 651

Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-ID 422
           R   +    G ++  +D + IE RVLA I+ +    +AF  G DI+ +T  + FN    D
Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+   R   K +   + Y               + + +        +  + +   + + 
Sbjct: 712 EVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
             + +   E    + +            R     +     +L                  
Sbjct: 767 EKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFNLRSFAER------------ 805

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                              + +N+             K+    +
Sbjct: 806 -----------------------------------TAMNSPIQG---SAADIIKVAMINM 827

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           Q    ++L E           ++L VHDE++ E P      +  +   +M         +
Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSAVK--LDV 876

Query: 662 PLKAEGYEAKRY 673
           PLK E    + +
Sbjct: 877 PLKVESKHGQTW 888


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/660 (13%), Positives = 184/660 (27%), Gaps = 138/660 (20%)

Query: 33  CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFE----RILFKKTL 84
              AW ++         D  E     + L       +   V     ++     +   +  
Sbjct: 337 VGVAWGNQQKIYVTNQDDLFENEYFIAWLKNA---SSQKKV-----YDAKRTYVALNRYA 388

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKN---ACLALN-FSEHLTKMEEGKALIARFCKGSI 140
               P      T + A       S  +          ++    +   GK +         
Sbjct: 389 --AAPQGIVFDTLLAAYLLDTNDSNNDIAGVAKHYGFYAIQSDEAIYGKGVKR------- 439

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
             P  +     H+        Y    +        +    +D E  L  +   +   G R
Sbjct: 440 GLPADEEVFFAHLARKVAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIR 499

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D   + +++   A+   ++++ I +       +      L + LF   G+ ++  ++  
Sbjct: 500 VDASRLHQMKGEFAERLHEIEQKIYQEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTG 558

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L          + IL     +      +  L + +  DG++         ++T
Sbjct: 559 YSTAVDVLEQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQT 617

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       +
Sbjct: 618 GRLSSVDPNLQNIP------------------------IRLEEGRKIREAFVPRAKDWVI 653

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
             +D + IE RVLA I+ ++    AF  G+DI+ +T  + F     ++V+   R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L + + +      + FE +   +++   +  +  +    
Sbjct: 714 NFGIVYG-----ISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYV 768

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRH 554
           + L            R     +     +L        +      SA  +  +  + +   
Sbjct: 769 ETLYHR---------RRYLPDINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLD-- 817

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RRL    +                             QA          
Sbjct: 818 -----------RRLKEEKL-----------------------------QAT--------- 828

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE+V E P+     +  L   +M    S    +PL  +    K +
Sbjct: 829 ---------MLLQVHDELVFEVPEDELERLDALVKEVMENAVS--LHVPLLTDSNWGKTW 877


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/649 (13%), Positives = 181/649 (27%), Gaps = 145/649 (22%)

Query: 38  DDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           + E V +++  +        L  +L +E +  + HN  F  ++ K+  G+     R   T
Sbjct: 344 NGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY-GLKFDGVR-GDT 401

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            +L+       S +     L                    +   +               
Sbjct: 402 LLLSYVLDPGFSGETLSEHLFH---------------YLGEVVDEK--------MDPGLA 438

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
               +   + +E        +      E  L  +   +   G ++D  ++ ++ + +A  
Sbjct: 439 VRGLKKLHQVLEEKLGSQDLVNLYKVVELPLSPVLADMEFTGIKVDPRILAEISQELALR 498

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             +    I ++      +   T  L   LF   G+  V  ++    T   +L     +  
Sbjct: 499 IAEDQARIYQVAGQEF-NINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELYGSHE 557

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + I+     +      ++T    +    GR+    +    + TGR S      QN+P 
Sbjct: 558 IIEHIVEYRTLAKLKSTYVDTFPGYIHPETGRVHTVFKQAV-TATGRLSSVEPNLQNIP- 615

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391
                                          +R   +       L+  D + I+ R LA 
Sbjct: 616 -----------------------IRMEEGRRIRKAFVPGDENHILLSCDYSQIDLRSLAH 652

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G++  I+ F  G DI+  T ++ F  P+D+V+ + R   K +                
Sbjct: 653 MSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNF-------------- 698

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   A    +     +   + + 
Sbjct: 699 GIVYGISDF------------------------------GLARGTGVTREEAKAYIERYL 728

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             + GV +  +++             +                           RR    
Sbjct: 729 DSYPGVRRYMQEVVAMGREKGYVSTVL--------------------------GRRRYLP 762

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
           D+        T  S   R            +Q  S DI+   M +  +          ++
Sbjct: 763 DLLSSN---RTVRSMAERMA------LNAPIQGTSADIIKLAMLSVYRELKRRNLRSRML 813

Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHD++V E P      V  L    M         +PL+ E      +
Sbjct: 814 LQVHDDLVFEVPLEELEEVALLVRDCMENAFE--LKVPLEVEVKVGANW 860


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++         + +       ++L +  +     ++    +  K   G+D
Sbjct: 331 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPGLE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFEDLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   ++ +               R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 153/440 (34%), Positives = 229/440 (52%), Gaps = 16/440 (3%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R++ K   G ++  +  I T ++A  + LP SL + 
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T A H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  +   
Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        L+          + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILQELAPAHR---IHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   L    SSD R RG LQ+ GA RT RW+G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357

Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G+K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKE 427
           IY  T  K F    D + KE
Sbjct: 418 IYCVTAGKMFGMDPDDIKKE 437



 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 122/289 (42%), Gaps = 45/289 (15%)

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                EL LGY+GG   F T A + GLDL + ++ +  T     W      + W + Q  +
Sbjct: 744  AHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAK 803

Query: 492  FA------------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--- 536
                          + DK +   C+ +K+ WR  H   +  W+DL +G    V+  G   
Sbjct: 804  RPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREF 863

Query: 537  ------------SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV----------- 573
                        +I   R         +     + + LPS R L Y  +           
Sbjct: 864  WAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDED 923

Query: 574  -------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                   +      N  T Q     T+GGK  ENIVQA+ RD+L   M N    GY IVL
Sbjct: 924  GRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVL 983

Query: 627  TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            +VHDE+V ETPDTP ++V  L  LM   P WA G PL AEG E KRY K
Sbjct: 984  SVHDELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 193/652 (29%), Gaps = 128/652 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92
           + +      +    E       L+Q+L D+    + +++   +   +    LGI+I +  
Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + +       S+ +    ++           K  I  F KG     P +     H
Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           + +           +++  E + +   L D E  L  +   + + G   D++ + +++  
Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           I ++   L  +I +   G   +      L + LF    + ++  ++    T   +L    
Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                 D IL     +      +  L + +S D R+        A +TGR S      QN
Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388
           +P                                +R      S    ++ AD + IE RV
Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I  ++    AF NG DI+  T  K FN   D+V    R   K +             
Sbjct: 662 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+     SQ+                                +     +    
Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A   GV Q   D+ +           +  RR                          
Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 783

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                  + + +NT                   +Q  + DI+   M   ++         
Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P +        +  +M +       +PLK +      +
Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/631 (14%), Positives = 177/631 (28%), Gaps = 143/631 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
             +   L  +++  V ++      +  K         K      + +       S     
Sbjct: 346 EAIKHLLTLQSIQKVVYDLK---NILHKVDFDETNQIKNCDDVMLASYVLDSTRS----- 397

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            + +              I+                A  +            D+ + + +
Sbjct: 398 -SYDLETLF---------ISYLNTDIAAIKENRWAGATVLLRNLWDELSKLIDLNSAQYV 447

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           ++ +      E  L  +   +   G+++D + + +  + I  +  KL+  I ++  G   
Sbjct: 448 YESI------EMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIA-GEWF 500

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L   LF    + +V  ++    T   +L           LIL+    +     
Sbjct: 501 NINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTT 560

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
               L +A++   GR+       G + TGR +      QN+P                  
Sbjct: 561 YCQGLVQAINPVTGRIHTNFIQTG-TATGRLASAEPNLQNIP------------------ 601

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+
Sbjct: 602 ------VKYDEGKLIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIH 655

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T A+ F   I +V+   R+  K +   + Y              GL            
Sbjct: 656 SQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS---------DYGLSRD--------- 697

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                      K+           +  K+  V +   ++ +   
Sbjct: 698 --------------------------IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFAR 731

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                         ++   +R+    D+K     L        R
Sbjct: 732 ENG--------------------------FVLTIFNRKRYIKDIKSTNKNLRNYA---ER 762

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                     + +Q  + DI+   M    K          I+L VHDE++ E+P      
Sbjct: 763 IAM------NSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEI 816

Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           V  +    M         +PL  E  E   +
Sbjct: 817 VKEIVKSEMENAV--LLKVPLVVEVKEGSNW 845


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/654 (15%), Positives = 195/654 (29%), Gaps = 134/654 (20%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            + I   A    D    +    E   + S+L     D+T+  ++ +   E ++    L I
Sbjct: 331 HSEIYSLAIKTKDTDTYII---EPEKI-SELKNIFEDKTINKISFDIK-EEMVLLDKLDI 385

Query: 87  DIPSKRWICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALI--ARFCKGSI 140
           D+    +    ++        S   LK      L +     +   GK             
Sbjct: 386 DL-IGPYDDLMLMHYLIDPSRSSYDLKLLSQSYLTYELDSDESLIGKGAKTKKYAEVDQD 444

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           D      ++ N ++         +  V      ++ +    + E+ L  +  ++   G+ 
Sbjct: 445 DLAKLLASQVNAIED-------SRDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFG 497

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
            D  ++  L+  + ++ + +  +I  L      +   T  L   LF    + +V  ++  
Sbjct: 498 TDRKILEGLKADLEKQIEAITSEIYDLAGSEF-NINSTKQLGEVLFKDLDLPVVKKTKTG 556

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L          + I             +  L  A+  DGR+R T +   AS T
Sbjct: 557 FSTDAKVLEKLRDKHPIIEKIERYREIYKLRSTYIEGLENAIDEDGRIRSTFRQNIAS-T 615

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QNLP                                +R    A  GK L+
Sbjct: 616 GRLSSQEPNLQNLP------------------------IKTDEGRAIRKAFKAGEGKILI 651

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA +A +     AF  G DI+  T ++ F+TP+D+V+K QR+  K +  
Sbjct: 652 DADYSQIELRILASLADDKNMQDAFNRGIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNF 711

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L++ +                                    
Sbjct: 712 GIIYG-----ISDYGLSQNLNIPRP----------------------------------- 731

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
                 +     ++  +  + +   D+ +                               
Sbjct: 732 ----RAKEYIDKYKKSYPQIKEYMDDVVQLARSQGY------------------------ 763

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             I     RR    ++      + +   ++              +Q  + DI+   M + 
Sbjct: 764 --IETLFKRRRYIPEISSRNFNVRSFGERI---------ALNTPIQGTAADIIKIAMIDT 812

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664
                       I+L +HDEI+ E+ +        +    M         L + 
Sbjct: 813 YNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAAKLKVDLLVD 866


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/675 (14%), Positives = 184/675 (27%), Gaps = 143/675 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFE 76
           A I     + D +                       + S L   L +E +  V  +  F 
Sbjct: 372 ANIISICLSIDTKESAYIPIKTDSINNHQNFLYLEEILSILQPTLENEKIKKVGQHLKFS 431

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             + K+   I++    +    +        ++  +    L+           K       
Sbjct: 432 YSILKRY-NINLAGMAF-DVILELYILYGTANYHDIKNFLDKDTFNVVTNFKKNYDNYNE 489

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ER 185
              +            +Q  QL   Y  + +++   L   L P  +            E 
Sbjct: 490 NNILS----------DLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEM 539

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   I + G  ID  L+      +      L+ +  +L      +   T  L+  L
Sbjct: 540 PLISILSRIENYGVLIDKKLLNTHAVELDYRLHALELEAYQLVGTPF-NLASTKQLQEIL 598

Query: 246 FLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           +    + +       +  T + +L   +       +IL   A S      +N L   ++ 
Sbjct: 599 YNQQKLPILKKTPKGAPSTNEEVLKKLSKKYSMPRIILQYRALSKLQSTYINKLIAMINK 658

Query: 302 D-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
              R+  +      + TGR S      QN+P                             
Sbjct: 659 KSNRVHTSYNQT-RTSTGRLSSTSPNLQNIP------------------------NRNYD 693

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   IA     +V AD + IE R++A ++ +   I  F + +DI+  T ++ F T 
Sbjct: 694 GRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELINDFLSEKDIHTATASEIFVTA 753

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +  V+ EQR   K +   L Y               L +            F  +     
Sbjct: 754 LHLVTDEQRQRAKTINFGLIYGMS-----AFGLARQLSVTCKEAQKYVDRYFNRYPGVMK 808

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSIS 539
           +   +++   ++     L G    L           +        +G     +      S
Sbjct: 809 YMQHIREHANKYGYVSTLDGRRLYL---------PDIYSANILQKKGAERAAINAPMQGS 859

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           A  +     + +    +   I                                       
Sbjct: 860 AADIIKKAMISIDNWLQKDEIP-------------------------------------- 881

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA 658
                 +R I+                 VHDE+V E  +      V  +  LM +   + 
Sbjct: 882 ------ARIIM----------------QVHDELVFEVHNDIVDPVVKKIKKLMEEC--FI 917

Query: 659 KGLPLKAEGYEAKRY 673
             +PLK +    K +
Sbjct: 918 MDVPLKVDVGIGKNW 932


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/624 (14%), Positives = 191/624 (30%), Gaps = 131/624 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSE 120
            +  + ++   E       L  ++  K +    +L             LK +   LN   
Sbjct: 377 DIKIIGYDIKEE---LFFALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEI 433

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K   GK    +      +   +     N      +F      D+   +     LI L
Sbjct: 434 LDLKEMLGKGKNKKTFFELEEDIIFKFISQN------VFAISALYDIFIEKAKENNLISL 487

Query: 181 SDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  E+ L  +   +   G  +D + +++L E  ++     ++ + +L  G + +     
Sbjct: 488 YENVEKPLVKVLADMEKTGVLVDRNKIIELNEEYSKLAYLYEQKVYELA-GEVFNLNSPK 546

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF   G+ +V  ++    T   +L   +      D IL   + +      L+ + 
Sbjct: 547 QLGVILFEKIGLPVVKKTKTGYSTDVEVLEKLSKKHEIVDYILKYRSLNKLISTYLDGIL 606

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           E +  DGR+R + +    + TGR S      QN+P                         
Sbjct: 607 EYIMDDGRVRTSFKQ-MITATGRLSSVDPNLQNIP------------------------I 641

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   +A   K  + AD + IE RVLA ++ +   I +F N  DI+  T ++ 
Sbjct: 642 RSEEGKNIRKVFVADKNKVFIDADYSQIELRVLAHLSKDSVMIDSFKNDLDIHYKTASEV 701

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F  PI++V+  QR   K +   + Y              GL                   
Sbjct: 702 FGVPINEVTDNQRRSAKAVNFGIVYGIS---------DYGLSKD---------------- 736

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                                +           +   +  +    +++            
Sbjct: 737 -------------------LNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKK------ 771

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                               D  +     R+    ++      + +   ++         
Sbjct: 772 --------------------DGFVTTILDRKRYIPEINSKNFNIRSFGERI--------- 802

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                +Q  + DI+   M    +          ++L +HDE++ E  ++   +V  +  +
Sbjct: 803 ALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHDELIVECEESEKETVKKILKN 862

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
            M     +   LPLK +  E + +
Sbjct: 863 SMENV--YKLDLPLKVDICEGRNW 884


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++         + +       ++L +  +     ++    +  K   G+D
Sbjct: 345 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPGLE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D D +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   ++ +               R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/658 (14%), Positives = 196/658 (29%), Gaps = 133/658 (20%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +A  +E    +   E +       ++++DET      +S    +  +     D+  K
Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391

Query: 92  RWI-CTSVLARTNGLPSSLKNAC---LALNFS-EHLTKMEEGKALIARFCKGSIDSPPYD 146
                  + +       S ++          +     +   GK           +   + 
Sbjct: 392 GVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDEKVYGKGAKQAIP-PEDELKGHL 450

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +A  + A            +   EL++ L      E  L L+   +   G ++DL  +
Sbjct: 451 GRKAAAISALHDLTLEALEKND-QHELYEDL------ELPLALILGEMESLGVKVDLKRL 503

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            K+ E + ++ K+ +E I +L  G   +      L + LF   G+ ++  ++    T   
Sbjct: 504 EKMGEELTKKLKEYEETIHRLA-GETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSAD 562

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL+           +  L +    D     T      ++TGR S  
Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLSST 622

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R   +    G  +  AD +
Sbjct: 623 DPNLQNIP------------------------IRLEEGRKIRQAFVPSKEGWLMFAADYS 658

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I+ ++  I+AF    DI+  T    F+   ++V+   R   K +   +   
Sbjct: 659 QIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIV-- 716

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN+                               +    
Sbjct: 717 ------------YGISDYGLSQNL------------------------------GITRKE 734

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                + +    +GV    +++ +          +   +R   +P +  R          
Sbjct: 735 AAAFIERYLTSFKGVKTYMEEIVQEAKQKGYV--TTLLKRRRYIPDITSRNFN------- 785

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
                        + + +NT                   +Q  + DI+ + M +  +   
Sbjct: 786 --------IKSFAERTAMNT------------------PIQGSAADIIKKAMIDMARRLK 819

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +++L VHDE++ E P      +  +   +M         +PLK +      +
Sbjct: 820 EENLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 179/663 (26%), Gaps = 130/663 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLFERIL 79
           +   A+A             +            +   L   +    +   AH+       
Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPPDVREGLRPLVE-AALPLHAHDLKAAAHA 399

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFC 136
             + LG+         T +++R         +L +            ++    A  A+  
Sbjct: 400 LAR-LGLARSGPG-EDTELMSRLLLPTRREHALVDVAR----ERTSCELPRSPADGAKRG 453

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTIN 195
              ++    +   A          +   +  E    E    L    + ER L  +   + 
Sbjct: 454 APGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR--EVERPLVPVLVEME 511

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  +D   +  +     +  + L+  I         +   T  L   LF+   + +V 
Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF-NVASTRELAQVLFVELELPVVK 570

Query: 256 ---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311
                  T + +L           L+L   + S      ++ L + V   DGR+  T   
Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQ 630

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA  TGR S      QN+P                             S  +R   +A 
Sbjct: 631 AGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRQAFVAP 665

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G +L+ AD + IE R+LA  + +   ++AF + ED++  T A+ F    ++V+ +QR I
Sbjct: 666 AGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRI 725

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            KV+   + Y               LDL            F  +     +  W  ++   
Sbjct: 726 AKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARA 780

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 L G A              +      L                           
Sbjct: 781 KGESRTLFGRA---------RAMPEIGAPNPALRNAAERTAINTPIQGTAADIV------ 825

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                          ++    V    +    A                            
Sbjct: 826 ---------------KIAMIRVHDALAQERRAAR-------------------------- 844

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670
                       ++L VHDE+V E P+     V  L    M         +PL+ +    
Sbjct: 845 ------------LLLQVHDELVLEVPERELEPVEALVRREMEGAAR--LKVPLEVQVGHG 890

Query: 671 KRY 673
           + +
Sbjct: 891 QTW 893


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/655 (13%), Positives = 177/655 (27%), Gaps = 129/655 (19%)

Query: 32  LCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             +    D  V +  D       P  L   L +  +     +      +    L + +  
Sbjct: 344 GFSLKVGD-KVYVSKDIALLQEKP--LKDILENRKIQKDVFDLK-RMTVGLHRLDVIVEG 399

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             +    + +       +  +     +           K  +  + KG   + P D    
Sbjct: 400 LNY-DMLLASYLVNNEKNSNDLGEIAHL----YDEYSIKTDLEVYGKGKKQAIPEDKEFF 454

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            H+ A     E  K ++    +  ++       E     +   +   G +++   +++LQ
Sbjct: 455 KHLAAKVCVIEKLKPELLKQLKEHEQDDLFETIEIPTARVLAKMEINGIKVEASTLIELQ 514

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
              A + K+L++ I K       +      L   LF    + ++  ++    T   +L  
Sbjct: 515 NEFAVKLKELEDKIYKQAGEEF-NLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQ 573

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                     IL+    +      +  L + +  DGR+         + TGR S      
Sbjct: 574 LKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQRDGRVHTRYLQT-LTATGRLSSVDPNL 632

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEA 386
           QN+P                                +R   +       +   D + +E 
Sbjct: 633 QNIP------------------------TRTEEGKQIRKAFVPSEPDGYIFSCDYSQVEL 668

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGA 445
           RVLA ++G+    +AF  G DI+  T  + F+    D+V+   R   K +   + Y    
Sbjct: 669 RVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVY---- 724

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      L                                        +     + 
Sbjct: 725 -GISDYGLSKNL---------------------------------------GISRKRAKE 744

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               +  ++  +        +           +                           
Sbjct: 745 FIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMH-------------------------- 778

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR    D+        T  S   R          + +Q  + DI+   M N  K      
Sbjct: 779 RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAMINMQKKLDELH 829

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +V+ VHDE++ + P     ++  +   +M         +PL A+      +
Sbjct: 830 LKTKMVIQVHDELIFDVPKDELETIKKIVPEIMQSAVK--LDVPLIADSGWGHNW 882


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 180/659 (27%), Gaps = 125/659 (18%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TL 84
            Q  I   A A +   +   +  E         ++  D+       ++   R +      
Sbjct: 330 HQGSIIGVAIANETG-IYYVEAEEALT-SDVFKKWAEDDQKEIYTFDAK--RTVVALGWA 385

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSI 140
           GID+ +  +    + +      S         N          +   GK           
Sbjct: 386 GIDLSNTTF-DIQMASYLIDPASGSHEIADIANRKNGIQVQTDEAVYGKGKKQ------- 437

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            + P     + H+          K+++E      ++     D E  L ++   +   G  
Sbjct: 438 -AIPEAEELSQHLGRKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVS 496

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D   +  + + + +   KL++ I +   G   +      L   LF   G+ ++  ++  
Sbjct: 497 VDQQELETIGKDLTERLAKLEQQIYEAA-GQSFNINSPKQLGKVLFEDLGLPVLKKTKTG 555

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
             T   +L          D IL            +  L + +    G++         ++
Sbjct: 556 YSTSADVLEKLKGEHDVIDHILFYRQLGKLNSTYIEGLLKVIHPKTGKIHTIFNQAV-TQ 614

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R   +    G K
Sbjct: 615 TGRLSSTEPNLQNIP------------------------VRLEEGRKIRRAFVPSKPGSK 650

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L  AD + IE RVLA I+ ++  I AF  G DI+  T +  F    ++V+ E R   K +
Sbjct: 651 LFAADYSQIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAV 710

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L + +          FE +   +++   +  +  E    
Sbjct: 711 NFGIVYG-----ISDYGLSQNLGISRKKAQTFIDKYFESYPGVKTYMEDIVAEAREQGYV 765

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             ++           R     +     +                +               
Sbjct: 766 TTMLQR---------RRYLPDLTSRNFNQRSFAERTAMNTPIQGSAADIIKK-------- 808

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                   +    ++L R+                   L   M 
Sbjct: 809 -----------------------AMVDMATELERQN------------------LKSVML 827

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                     L VHDE++ E P+    ++  L   +M         +PL  +      +
Sbjct: 828 ----------LQVHDELIFEVPEDEIETMEKLVKDVMESTIE--LNVPLITDMATGDTW 874


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 157/703 (22%), Positives = 275/703 (39%), Gaps = 83/703 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           LF+D E  S   L   G+  Y          + +    ++  D  E    +P  +L ++ 
Sbjct: 8   LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWELGQPIPRQILAHIA 67

Query: 63  DETVMCVAHNSLFERILFK----KTLGIDIPS----KRWICTSVLARTNGLPSSLKNACL 114
                 VAHN+ F+ +++     + +  D+P      +  C++  AR NGLP  L  A  
Sbjct: 68  -AGKTFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRAAE 126

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL       K  EG A +             + T A H + +    +Y   D +    L+
Sbjct: 127 ALGLPLQ--KDREGAAAMKELMHNP------EWTPATHPELFARTYKYALLDTDVMVALW 178

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +   P+   E+  W LD  IN RG+ +D++    + E+    +  +D ++   T G I +
Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           +     ++ +     G +L +    ++K++L+  ++ ++ +D++  RL +S +       
Sbjct: 239 TSVIKQIQSFAAG-LGAELDEAGRESVKALLTRDDVPEVLRDVLTLRLDASRAPKKHDAI 297

Query: 295 LSEAVSSDGRLRGTLQFYGA--SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNRG 350
           L   V+  GR+  +  ++GA   R+        Q  N+  PR  R  +     + A  R 
Sbjct: 298 LRAHVN--GRMCHSTVYHGALSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYLDAARRR 355

Query: 351 ETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
           +            +       R    A + G  LVVADL+GIEAR   W+A ++  +  +
Sbjct: 356 DYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLVEY 415

Query: 403 ANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
             G D Y    A  F+ P  D V+ +QR IGK+  LAL + GG      MA   GL+L +
Sbjct: 416 EQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLELSE 475

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                                       +  ++R  H  +   W
Sbjct: 476 ---------------------------------------DLRRKIVWSYRESHPALSTWW 496

Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
             L       + + G   +              R    + + LPS R + Y + +     
Sbjct: 497 ASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVLEP 556

Query: 575 GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           G  + +           T   K+   N+ Q ++RD+  E M +       IV  V+DE++
Sbjct: 557 GASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPVE-QIVHHVYDEVI 615

Query: 634 SETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E P+      +  L + ++K P WA GLPL AEG+ +  +RK
Sbjct: 616 LEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84
             +    +                + ++L D         +  +  +F           L
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138
           G+ +P   +    + +       +  +           +      +   GK    +  + 
Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +            LF        +  ++    L   +D E  L  +   +  +G
Sbjct: 447 DKLFGQFARKSD------ALFALRPDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQG 498

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ++   +  +    +Q  K L+E I         +      L   LF    + ++  ++
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L+           IL+    +      +  L +A   D ++         +
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
           +TGR S      QN+P ++                             +R   +    G 
Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
           ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                + Y               + + +          F+ + +   +   M  +  E  
Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + L            R     +     +L +                           
Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                   + +NT             K+    +Q          
Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817

Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K   + G    ++L VHDE++ E P+     +  L   +M         +PLK E +  
Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874

Query: 671 KRY 673
             +
Sbjct: 875 PTW 877


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 196/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + + + +        +L +  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +    K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELVGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 196/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + + + +        +L +  +     ++    +  K   GID
Sbjct: 331 ADIQGFGIQNENG--CYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-GID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +    K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 502 RNMGEELVGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 561 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +  +D+ +          +    R   +P +  R         
Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84
             +    +                + ++L D         +  +  +F           L
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138
           G+ +P   +    + +       +  +           +      +   GK    +  + 
Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +            LF        +  ++    L   +D E  L  +   +  +G
Sbjct: 447 DKLFGQFARKSD------ALFALRPDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQG 498

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ++   +  +    +Q  K L+E I         +      L   LF    + ++  ++
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L+           IL+    +      +  L +A   D ++         +
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
           +TGR S      QN+P ++                             +R   +    G 
Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
           ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                + Y               + + +          F+ + +   +   M  +  E  
Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + L            R     +     +L +                           
Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                   + +NT             K+    +Q          
Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817

Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K   + G    ++L VHDE++ E P+     +  L   +M         +PLK E +  
Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874

Query: 671 KRY 673
             +
Sbjct: 875 PTW 877


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + RT+ +       ++L D  +     ++    +  K   GID
Sbjct: 345 ADIQGFGIQNENG--CYFIRTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 575 VLEKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 746 AAAEFIEKYLESFPGVQEYMSDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617
                         + + +NT                   +Q  + DI+ + M       
Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830

Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G    ++L VHDE++ E P      +  L   +M         +PLK +      +
Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHAIELV--VPLKVDYSYGPTW 887


>gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22]
 gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22]
          Length = 886

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 184/661 (27%), Gaps = 137/661 (20%)

Query: 30  ITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
           +   +    D  + +  D       P  L Q L D+ +     N  F+     +    L 
Sbjct: 342 LEGFSLKVSD-KIYVSKDVVLLQEAP--LRQMLEDKKIKK---NV-FDIKRTYVGLHRLD 394

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           ID     +    + +      ++  +     +           K  +  + KG   + P 
Sbjct: 395 IDAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAVPE 449

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           D     H+ A     E  K+ +    +  ++       E  +  +   +   G +++  +
Sbjct: 450 DDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASV 509

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + +L    A + ++L+  I +       +      L   LF    +  +  ++    T  
Sbjct: 510 LNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLNLPPIKKTKTGYSTSV 568

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L    +       IL+    +      +  L E +  D R+         + TGR S 
Sbjct: 569 EVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDSRIHTRYLQT-LTATGRLSS 627

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVAD 380
                QN+P                                +R   +    +G      D
Sbjct: 628 VDPNLQNIP------------------------TRTDEGKQIRKAFVPSTKDGYIF-SCD 662

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +   +
Sbjct: 663 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGI 722

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L                                        + 
Sbjct: 723 VY-----GISDYGLSKNL---------------------------------------GIS 738

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               +     +  ++  +        +           +                     
Sbjct: 739 RKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH-------------------- 778

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+      + +      R          + +Q  + DI+   M N  K
Sbjct: 779 ------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQK 823

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
                     +VL VHDE++ + P     ++  +   +M         +PL A+      
Sbjct: 824 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 881

Query: 673 Y 673
           +
Sbjct: 882 W 882


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 99/662 (14%), Positives = 188/662 (28%), Gaps = 135/662 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     +   + +        +L +  +     ++    +  K   G+D
Sbjct: 345 ADIQGFGIQNENG--CYFISADIALKSDAFKAWLANAEMRKHTFDAKRAIVALKW-KGVD 401

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143
           I    +    + A       + K+        E       +   GK          +D  
Sbjct: 402 IQGIDF-DLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKR--AVPELDVV 458

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R  HV          +       ELF  L      E  L  +   +  +G ++D 
Sbjct: 459 AEHVARKVHVLYDVKQTFIEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +  + E +A   K+++++I KL      +      L + LF    + ++  ++    T
Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            IL+           +  L + V  D  ++         ++TGR
Sbjct: 572 SADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G  +  
Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           +                G+     SQN                                +
Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
              A     + +     GV +   ++ +               R   +P +  R      
Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL-- 798

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                            + + +NT                   +Q  + DI+ + M    
Sbjct: 799 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMA 827

Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
               + G    ++L VHDE++ E P      +  L   +M      A  +PLK +     
Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGP 885

Query: 672 RY 673
            +
Sbjct: 886 TW 887


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 91/640 (14%), Positives = 174/640 (27%), Gaps = 141/640 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEDNIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRREAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR        +        IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRR-------YIPEANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  V   L   M         +PL  +    + + K
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/659 (14%), Positives = 168/659 (25%), Gaps = 150/659 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             +T  A +  +   +  +   +      + + L D TV    H++           G+ 
Sbjct: 406 PQVTSVALSSREGAARAVEL--KGESGEVVRRALADPTVPKAVHDAK-----AAMHAGLP 458

Query: 88  IPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           + S     T +         +           LN                          
Sbjct: 459 LESVE-HDTMLYEYLLDPTYTTYRLPDVVLRRLNLK----------------------LA 495

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                 A+              D          +    D +R L  +   +   G ++D 
Sbjct: 496 GTLPEAADMTHRLTTKLHKLVEDG-------GLMKVYEDIDRPLVTVLYAMEAAGVKLDC 548

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSE 258
           D++ ++   + ++   L   I  L+     +      L   LF    +          + 
Sbjct: 549 DVLAEMSTRLQRDADALARKIYGLSGQEF-NINSPKQLGDVLFNKLNLPKPVKYGKGKTI 607

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
            T   +L           L+L     +      ++ L     +  GRL  T     A+ T
Sbjct: 608 STAVDVLEGLAGEHEVPKLVLEYRQFTKLKSTYVDALPNLCHAGTGRLHTTFAQA-ATST 666

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  +A  G  L+
Sbjct: 667 GRLSSVNPNLQNIP------------------------IRTELGREIRAAFVAEKGNVLL 702

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA  + +   + A+ N  DI+  T ++ F  P   +  E R   K +  
Sbjct: 703 AADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKAVNF 762

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L +          S FE +         + +Q  +      
Sbjct: 763 GIVYGISP-----FGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLEQVRKDEKVST 817

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           L G    +           +     +L                                 
Sbjct: 818 LFGRIRPI---------PDIHSRNPNLRGFAERTATNTPLQGTAADLI------------ 856

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                    +L    +                                 RD++       
Sbjct: 857 ---------KLAMIRIH--------------------------------RDLIER----- 870

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN-PSWAKGLPLKAEGYEAKRYR 674
            K    ++L VHDE+V E P      V  L    M    P     +PLK +    K +R
Sbjct: 871 -KLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPE--LTVPLKVDVGVGKNWR 926


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/657 (16%), Positives = 191/657 (29%), Gaps = 133/657 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I      ++DE                 L YL+DET     ++     ++  +  G++I 
Sbjct: 327 ILGYGI-YNDEQAYFISYENALK-DESFLAYLKDETKKKYGYDIK-SAVIGSRWNGVEIN 383

Query: 90  SKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
              +   S+ +          LK  C   ++       E        F KG+    P D 
Sbjct: 384 GYTF-DLSLASYVLEPAIKEELKYVCTHFDYDGVQYDEEV-------FGKGAKKHIPDDA 435

Query: 148 TRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  +      Y  +DV     +  K+     D E  +  +   +   G  IDLD++
Sbjct: 436 LLAQHTVSKAKAI-YELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVL 494

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++ E   +  +KL  DI +++ G   +      L   LF   G+     ++    T + 
Sbjct: 495 KEMDEAFDETIEKLSNDIYRIS-GTTFNISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQD 553

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L           L+L     +  +   L  L E V  D ++    +    + TGR S  
Sbjct: 554 VLEKIIDAHPVVPLVLEYRMLTKLSSTYLKGLQEQVFPDNKIHTIYKQT-LTHTGRLSSV 612

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   ++ NG  LV  D + 
Sbjct: 613 DPNLQNIP------------------------VRSEEGKLIRKAFVSHNGY-LVSFDYSQ 647

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA +A     I AF  G+DI+  T A  F    ++V+ + R+  K +   + Y  
Sbjct: 648 IELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGM 707

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        + +                                            
Sbjct: 708 -----SEFRLSKDIGMSIA---------------------------------------EA 723

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                 +   +  V     ++ E           ++                        
Sbjct: 724 RNFINKYFETYPEVKTYMDEVVEVCKKQGYVSTLLN------------------------ 759

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             R+     +      +     +               +Q    DIL   M    K    
Sbjct: 760 --RKRYIPTINDKNFMVRQQAQRY---------AMNTPIQGTGADILKLAMIEVDKALKV 808

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++ +  +     V +L    M         +PL  EG  AK +
Sbjct: 809 HHLKSQMILQVHDELIFDVFEDELEEVMSLVKEKMENCIK--MDVPLIVEGNYAKNW 863


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 99/658 (15%), Positives = 194/658 (29%), Gaps = 127/658 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++         + +       ++L +  +     ++    +  K   G+D
Sbjct: 292 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 348

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 349 IQGIDF-DLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPEQE 403

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             A HV          K+  E   E  ++    ++ E  L  +   +  +G  +D + + 
Sbjct: 404 VVAEHVARKVHVLYDVKQIFEEELEKNEQYELFTELELPLARVLADMEVKGVTVDTERLR 463

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
            + E +A   K+++++I +L      +      L + LF    + ++  ++    T   +
Sbjct: 464 NMGEELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVLKKTKTGYSTSADV 522

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGC 323
           L            IL+           +  L + V  D  ++         ++TGR S  
Sbjct: 523 LDKLMDHHAIIPKILHYRQLGKLNSTYIEGLLKVVHDDSSKIHTRFNQ-VLTQTGRLSST 581

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R   I    G  +  AD +
Sbjct: 582 EPNLQNIP------------------------IRLEEGRKIRQAFIPSEEGWIMYAADYS 617

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA IA ++  ++AF +  DI+  T    F    D+V+   R   K +   +   
Sbjct: 618 QIELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV-- 675

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN                                +   A
Sbjct: 676 ------------YGISDYGLSQN------------------------------LGITRKA 693

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                + +     GV +   D+ +          S    R   +P +  R          
Sbjct: 694 AGEFIERYLESFPGVQEYMADIVKDAKQKGYV--STLLNRRRYIPEITSRNFNL------ 745

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NAT 618
                        + + +NT                   +Q  + DI+ + M        
Sbjct: 746 ---------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRLE 778

Query: 619 KNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           + G    ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 779 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 834


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/632 (13%), Positives = 175/632 (27%), Gaps = 129/632 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113
           L   L+ ++V     N+  + +   + LGI + +  +    + +       +  +     
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENINF-DLLLASYLLNTNDNSNDLGQVA 423

Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               + +    +   GK             P  D T  +H+       E  ++D+ A  +
Sbjct: 424 QEHGYDDVRTDEEVYGKGAKR-------TVPDDDETFFSHLATKARAIEQLRKDLFAKLD 476

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             K+    +D E  L  +   +   G  +D   +  +   + +   +++  I +      
Sbjct: 477 ENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEF 536

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   T  L   LF    + ++  ++    T   +L          + IL     +    
Sbjct: 537 -NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQS 595

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + + S+ +   T      ++TGR S      QN+P                  
Sbjct: 596 TYIAGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP------------------ 637

Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +    G ++  +D + +E RVLA I G+    + F NGEDI
Sbjct: 638 ------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDI 691

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + +T  + F+   D                                            + 
Sbjct: 692 HASTARRIFHLAPD-------------------------------------------AEI 708

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +A +  +         A +  +         + +  +  GV +   D     
Sbjct: 709 DRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFA 768

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                RR    D+        +   +  
Sbjct: 769 KENGYVETITH--------------------------RRRYLPDIHAKSFSKRSFAERT- 801

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
                        +Q  + DI+   M               ++L +HDE+V E P     
Sbjct: 802 --------AMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIP 853

Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  L   +M         +PLK +      +
Sbjct: 854 VLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84
             +    +                + ++L D         +  +  +F           L
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138
           G+ +P   +    + +       +  +           +      +   GK    +  + 
Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +            LF        +  ++    L   +D E  L  +   +  +G
Sbjct: 447 DKLFGQFARKSN------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ++   +  +    +Q  K L+E I         +      L   LF    + ++  ++
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L+           IL+    +      +  L +A   D ++         +
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
           +TGR S      QN+P ++                             +R   +    G 
Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
           ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                + Y               + + +          F+ + +   +   M  +  E  
Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + L            R     +     +L +                           
Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                   + +NT             K+    +Q          
Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817

Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K   + G    ++L VHDE++ E P+     +  L   +M         +PLK E +  
Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874

Query: 671 KRY 673
             +
Sbjct: 875 PTW 877


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84
             +    +                + ++L D         +  +  +F           L
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138
           G+ +P   +    + +       +  +           +      +   GK    +  + 
Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +            LF        +  ++    L   +D E  L  +   +  +G
Sbjct: 447 DKLFGQFARKSD------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ++   +  +    +Q  K L+E I         +      L   LF    + ++  ++
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L+           IL+    +      +  L +A   D ++         +
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
           +TGR S      QN+P ++                             +R   +    G 
Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
           ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                + Y               + + +          F+ + +   +   M  +  E  
Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + L            R     +     +L +                           
Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                   + +NT             K+    +Q          
Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817

Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K   + G    ++L VHDE++ E P+     +  L   +M         +PLK E +  
Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSAVH--LDVPLKVESHYG 874

Query: 671 KRY 673
             +
Sbjct: 875 PTW 877


>gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
          Length = 896

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 184/661 (27%), Gaps = 137/661 (20%)

Query: 30  ITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
           +   +    D  + +  D       P  L Q L D+ +     N  F+     +    L 
Sbjct: 352 LEGFSLKVSD-KIYVSKDVVLLQEAP--LRQMLEDKKIKK---NV-FDIKRTYVGLHRLD 404

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           ID     +    + +      ++  +     +           K  +  + KG   + P 
Sbjct: 405 IDAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAVPE 459

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           D     H+ A     E  K+ +    +  ++       E  +  +   +   G +++  +
Sbjct: 460 DDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASV 519

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + +L    A + ++L+  I +       +      L   LF    +  +  ++    T  
Sbjct: 520 LNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLNLPPIKKTKTGYSTSV 578

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L    +       IL+    +      +  L E +  D R+         + TGR S 
Sbjct: 579 EVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDSRIHTRYLQT-LTATGRLSS 637

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVAD 380
                QN+P                                +R   +    +G      D
Sbjct: 638 VDPNLQNIP------------------------TRTDEGKQIRKAFVPSTKDGYIF-SCD 672

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + +E RVLA ++G++   +AF +G DI+  T  K F+    D+V+   R   K +   +
Sbjct: 673 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGI 732

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L                                        + 
Sbjct: 733 VY-----GISDYGLSKNL---------------------------------------GIS 748

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               +     +  ++  +        +           +                     
Sbjct: 749 RKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH-------------------- 788

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+      + +      R          + +Q  + DI+   M N  K
Sbjct: 789 ------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQK 833

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
                     +VL VHDE++ + P     ++  +   +M         +PL A+      
Sbjct: 834 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 891

Query: 673 Y 673
           +
Sbjct: 892 W 892


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84
             +    +                + ++L D         +  +  +F           L
Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138
           G+ +P   +    + +       +  +           +      +   GK    +  + 
Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +            LF        +  ++    L   +D E  L  +   +  +G
Sbjct: 447 DKLFGQFARKSN------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ++   +  +    +Q  K L+E I         +      L   LF    + ++  ++
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L+           IL+    +      +  L +A   D ++         +
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
           +TGR S      QN+P ++                             +R   +    G 
Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
           ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                + Y               + + +          F+ + +   +   M  +  E  
Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + L            R     +     +L +                           
Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                   + +NT             K+    +Q          
Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817

Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K   + G    ++L VHDE++ E P+     +  L   +M         +PLK E +  
Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874

Query: 671 KRY 673
             +
Sbjct: 875 PTW 877


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 94/628 (14%), Positives = 173/628 (27%), Gaps = 146/628 (23%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNACLAL 116
           + L+ +TV  V     ++       L +      K      + +              + 
Sbjct: 352 EILKSDTVKIV-----YDLKNIFHQLNLKDTDNIKNCEDVMIASYVLDSTRG------SY 400

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                            R  K  +            ++                  L   
Sbjct: 401 ELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLID---------------LNSC 445

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                + ER L  +   +   G+++D D +L+  + I  +  KL+  I ++  G   +  
Sbjct: 446 KFLYENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIA-GEWFNIN 504

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L   LF    + ++  ++    T   +L           LIL+    +        
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQ 564

Query: 294 TLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            L +A++   GR+  T    G + TGR +      QN+P                     
Sbjct: 565 GLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP--------------------- 602

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T
Sbjct: 603 ---VKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQT 659

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            A+ F   I  V+ E R+  K +   +                G+               
Sbjct: 660 AAEVFGVDIANVTPEMRSQAKAVNFGIV--------------YGISDY------------ 693

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                               A   K+           +  ++  V +   +  +      
Sbjct: 694 ------------------GLARDVKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDNG 735

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                      ++   +R+    D+K     L        R   
Sbjct: 736 --------------------------FVLTLFNRKRYVKDIKSTNRNLRGYA---ERIAM 766

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                  + +Q  + DI+   M    +          I+L VHDE++ E P      V  
Sbjct: 767 ------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820

Query: 647 LCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           +    M      A  +PL  E  E   +
Sbjct: 821 IVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 176/690 (25%), Gaps = 158/690 (22%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65
             QA ++  A A             +                          L   L    
Sbjct: 437  MQAELSGIALALAPNAACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGG 496

Query: 66   VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA-LNFSEH 121
             + V  N  F   +     GI + +       +++           L+      L+ +  
Sbjct: 497  HLKVGFNVKF-TAVLLAQHGIVMQNN--DDVELISYALDAGRGAHDLEALAQRWLDHTAL 553

Query: 122  LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  G                     A           Y       T  L++ L P  
Sbjct: 554  NYGELIGSG---------------RNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRL 598

Query: 182  DGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
              ER           +      +  RG  ID  ++ +L    AQ   +L+ +I KL    
Sbjct: 599  VAERMNSVYETLERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEP 658

Query: 232  IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSG 286
            I +      +   +F   G+     ++     T   IL             IL+    S 
Sbjct: 659  I-NVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSK 717

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                  + L E V+       T     A+ TGR S      QN+P               
Sbjct: 718  LKSTYTDALPEYVNPQTSRVHTTYALAATTTGRLSSNEPNLQNIP--------------- 762

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +R   IA+ G KLV AD + IE R+LA IA      +AF +G 
Sbjct: 763  ---------VRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGL 813

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            DI+  T ++ F  P+  +  E R   K +   + Y               L + +     
Sbjct: 814  DIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAGT 868

Query: 467  KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 FE +    ++    +D   E    + L G  C          +  +         
Sbjct: 869  YIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCH---------YPDIKSPNPSHRA 919

Query: 527  GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                             A++ R  M R    +     S+R L                  
Sbjct: 920  FNERAAINARLQGTA--ADIIRRAMVRMDDALAAKKLSARML------------------ 959

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVG 645
                                                         ++ E PD     ++ 
Sbjct: 960  ----------------------------LQVHDE-----------LIFEVPDDEVAATLP 980

Query: 646  TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             +  +M     P+    +PL+ +   A  +
Sbjct: 981  VVQHVMQDAPFPAMLLSVPLQVDARAADNW 1010


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84
             +    +                + ++L D         +  +  +F           L
Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138
           G+ +P   +    + +       +  +           +      +   GK    +  + 
Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +            LF        +  ++    L   +D E  L  +   +  +G
Sbjct: 447 DKLFGQFARKSN------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             ++   +  +    +Q  K L+E I         +      L   LF    + ++  ++
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L+           IL+    +      +  L +A   D ++         +
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
           +TGR S      QN+P ++                             +R   +    G 
Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
           ++  +D + IE RVL+ I+G++   +AF +G DI+  T  K F     D+V+ + R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                + Y               + + +          F+ + +   +   M  +  E  
Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + L            R     +     +L +                           
Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                   + +NT             K+    +Q          
Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817

Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K   + G    ++L VHDE++ E P+     +  L   +M         +PLK E +  
Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874

Query: 671 KRY 673
             +
Sbjct: 875 PTW 877


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 99/666 (14%), Positives = 181/666 (27%), Gaps = 128/666 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS-----AMP-----SDLLQYLRDETVMCVAHNSLF 75
             A +   A+A             +       +P       L   +    +   AH+   
Sbjct: 338 RSAPLVGLAFA-GAGRAFYLPLGHRYLGAPAPLPAADVREGLRPLVE-AALPLHAHDLKS 395

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALI 132
                 + LG+         T +++R         +L +            ++    A  
Sbjct: 396 AAHALAR-LGLARSGPG-EDTELMSRLLLPTRREHALVDVAR----ERTSCELPRSPADG 449

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
           A+     ++    +   A          +   +  EA  E  +      + ER L  +  
Sbjct: 450 AKRGAPGLEGLEVERVAAWAGACAAALPDLAAKLAEA-LETERLGALYREVERPLVPVLV 508

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +D   +  +     +  + L+  I         +   T  L   LF+   + 
Sbjct: 509 EMERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHPF-NVASTRELAQVLFVELELP 567

Query: 253 LVD---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
           +V        T + +L           L+L   + S      ++ L + V   DGR+  T
Sbjct: 568 VVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTT 627

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
               GA  TGR S      QN+P                             S  +R   
Sbjct: 628 FHQAGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRQAF 662

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G +L+ AD + IE R+LA  + +   ++AF + ED++  T A+ F    ++V+ +Q
Sbjct: 663 VAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQ 722

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R I KV+   + Y               LDL            F  +     +  W  ++
Sbjct: 723 RRIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEE 777

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    L G A              +      L                        
Sbjct: 778 ARAKGESRTLFGRA---------RAMPEIAARNPALRNAAERTAINTPIQGTAADVV--- 825

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    V    +                              
Sbjct: 826 ------------------KIAMIRVHAALAQERREAR----------------------- 844

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                          ++L VHDE+V E P+     V  L    M         +PL+ + 
Sbjct: 845 ---------------LLLQVHDELVLEVPERELEPVEALVRREMEGAAR--LKVPLEVQV 887

Query: 668 YEAKRY 673
              + +
Sbjct: 888 GHGQTW 893


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 84/632 (13%), Positives = 175/632 (27%), Gaps = 129/632 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113
           L   L+ ++V     N+  + +   + LGI + +  +    + +       +  +     
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENINF-DLLLASYLLNTNDNSNDLGQVA 423

Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               + +    +   GK             P  D T  +H+       E+ ++D  A  +
Sbjct: 424 QEHGYDDVRTDEEVYGKGAKR-------AVPDDDETFFSHLATKARAIEHLRKDFFAKLD 476

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             K+    +D E  L  +   +   G  +D   +  +   + +   +++  I +      
Sbjct: 477 ENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEF 536

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +   T  L   LF    + ++  ++    T   +L          + IL     +    
Sbjct: 537 -NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQS 595

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + + S+ +   T      ++TGR S      QN+P                  
Sbjct: 596 TYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP------------------ 637

Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +    G ++  +D + +E RVLA I G+    + F NGEDI
Sbjct: 638 ------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDI 691

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + +T  + F+   D                                            + 
Sbjct: 692 HASTARRIFHLAPD-------------------------------------------AEI 708

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +A +  +         A +  +         + +  +  GV +   D     
Sbjct: 709 DRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFA 768

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                RR    D+        +   +  
Sbjct: 769 KENGYVETITH--------------------------RRRYLPDIHAKSFSKRSFAERT- 801

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
                        +Q  + DI+   M               ++L +HDE+V E P     
Sbjct: 802 --------AMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIP 853

Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  L   +M         +PLK +      +
Sbjct: 854 ILSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +        +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 93/660 (14%), Positives = 189/660 (28%), Gaps = 134/660 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I       D + V             D    L  + +    +N   + +       I + 
Sbjct: 346 IICMYITLDGDKVFCVS----EERIMDFKAVLESKDIKKYGYNMKEDYVALMPYE-IALK 400

Query: 90  SKRWICTSVLARTNGLPS-SLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
              +   ++        S +           L  S    +   GK + A+  +       
Sbjct: 401 GMSF-DIAIAEYLIDSTSTNTSECGAIAMKYLMKSVKSKEELLGKGVKAKKFEDLTKEEL 459

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                +       +     K   E      ++L    D E  L  +   +   G ++D +
Sbjct: 460 SGYISS---ILNTVVNAMPKMKEEIESTKIEKLFD--DVEMPLVEVLGNMEYTGIKVDKE 514

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
           ++ +L +   +    L+E+I         +      L + LF    + ++  ++    T 
Sbjct: 515 MLDELGKEFTKIISSLEEEIYGYAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYSTN 573

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L          D I             +  L+  ++  DGR+  T      + TGR 
Sbjct: 574 AEVLEKLKDKHPIIDKIGEYRQIVKLNSTYVEGLTALINPIDGRIHSTFNQT-ITTTGRI 632

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R+  ++ + K+LV AD
Sbjct: 633 SSTEPNLQNIP------------------------VRMEIGRRLRAVFVSDDEKRLVDAD 668

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + +E RVLA ++G+   I AF +GEDI+  T ++ FN P+++V+ E R+  K +   + 
Sbjct: 669 YSQVELRVLAHMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGII 728

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                                                               +    +  
Sbjct: 729 --------------------------------------------YGKTDFGLSEDLNIPV 744

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +   +++ AK++ + +   ++ E            +                     
Sbjct: 745 PQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFN--------------------- 783

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617
                RR    ++K           +               +Q  + DI+   M N    
Sbjct: 784 -----RRRYIPEIKSKNFMERNRGKRA---------AMNAPIQGSAADIIKIAMVNVFRR 829

Query: 618 ---TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +    ++L VHDE++ ETP      V  +    M         + L  +      +
Sbjct: 830 LEKEELRSKLILQVHDELIVETPIDELEKVEKIVREEMENAVD--MKVALTVDLNTGVSW 887


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 91/640 (14%), Positives = 173/640 (27%), Gaps = 141/640 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKDGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  V   L   M         +PL  +    + + K
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +        +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/630 (14%), Positives = 177/630 (28%), Gaps = 146/630 (23%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACL 114
           + + L+ +TV  V     ++       L ++     K      + +       S      
Sbjct: 350 IEEILKSDTVKIV-----YDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           +             +    R  K  +            ++                  L 
Sbjct: 399 SYELETLFVSYLNTEIEAVRKDKKIVSVVLLKRLWDELLRLID---------------LN 443

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                  + ER L  +   +   G+++D D +++  + I  +  KL+  I ++  G   +
Sbjct: 444 SCQFLYENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFN 502

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L   LF    + ++  ++    T   +L           LIL+    +      
Sbjct: 503 INSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY 562

Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
              L +A++   GR+  T    G + TGR +      QN+P                   
Sbjct: 563 CQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP------------------- 602

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +   G  L+ AD + IE R+LA I+ ++  I AF N  DI+ 
Sbjct: 603 -----VKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHS 657

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T A+ F   I  V+ E R+  K +   +                G+             
Sbjct: 658 QTAAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISDY---------- 693

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A   K+           +  ++  V +   +  +    
Sbjct: 694 --------------------GLARDIKISRKEAAEFINRYFERYPKVKEYIDNTVKFARD 733

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                        ++   +R+    D+K     L        R 
Sbjct: 734 NG--------------------------FVLTLFNRKRYIKDIKSTNRNLRGYA---ERI 764

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                    + +Q  + DI+   M    +          I+L VHDE++ E P      V
Sbjct: 765 AM------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIV 818

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             +    M    +    +PL  E  E   +
Sbjct: 819 KEIVKREMENAVT--LKVPLVVEVKEGLNW 846


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 195/658 (29%), Gaps = 133/658 (20%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +A  +E    +   E +       ++++DET      +S    +  +     D+  K
Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391

Query: 92  RWI-CTSVLARTNGLPSSLKNAC---LALNFS-EHLTKMEEGKALIARFCKGSIDSPPYD 146
                  + +       + ++          +     +   GK           +   + 
Sbjct: 392 GVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDEKVYGKGAKQAIP-PEDELKEHL 450

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +A  + A            +   EL++ L      E  L L+   +   G ++D+  +
Sbjct: 451 GRKAAAISALHDLTLEALEKND-QHELYEDL------ELPLALILGEMESLGVKVDIKRL 503

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E + ++ K+ +E I +L  G   +      L + LF   G+ ++  ++    T   
Sbjct: 504 ENMGEELTKKLKEYEETIHRLA-GETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSAD 562

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL+           +  L +    D     T      ++TGR S  
Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLSST 622

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R   +    G  +  AD +
Sbjct: 623 DPNLQNIP------------------------IRLEEGRKIRQAFVPSKEGWLMFAADYS 658

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I+ ++  I+AF    DI+  T    F+   ++V+   R   K +   +   
Sbjct: 659 QIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIV-- 716

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN+                               +    
Sbjct: 717 ------------YGISDYGLSQNL------------------------------GITRKE 734

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                + +    +GV    +++ +          +   +R   +P +  R          
Sbjct: 735 AAAFIERYLTSFKGVKTYMEEIVQEAKQKGYV--TTLLKRRRYIPDITSRNFN------- 785

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
                        + + +NT                   +Q  + DI+ + M +      
Sbjct: 786 --------IKSFAERTAMNT------------------PIQGSAADIIKKAMIDMARRLK 819

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             K   +++L VHDE++ E P      +  +   +M         +PLK +      +
Sbjct: 820 EEKLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +        +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F    +D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEVDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/640 (14%), Positives = 174/640 (27%), Gaps = 141/640 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ +++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR         +       IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPEANSSNK-------IVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  V   L   M         +PL  +    + + K
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/681 (14%), Positives = 192/681 (28%), Gaps = 140/681 (20%)

Query: 10  TRS-PQPLPKVGVWAYAEQAVI-TLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDET 65
           T S    L    V+A  E   +    A   D         +  ++  + + +  +   + 
Sbjct: 304 TTSVLADLDTAAVFAVLENDTLYMGVA---DGSNCYFIAANLAQEYDIIA-VKNFFEAKN 359

Query: 66  VMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
           +  + HNS  + R +  +   I+I       T++ +           L  A    +    
Sbjct: 360 ISKILHNSK-DLRHILYRYQ-INIHG-NIFDTAIASYLINPLQSDYELSVAATGYDIKHV 416

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              +  GK  I      S         RA+ +   Q        D          L    
Sbjct: 417 DQLLGTGKNKITWASLASXIIVAQLGARASAMWTLQTAQLKELTDA-------SMLDLFY 469

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D   +    + +      L++DI  L D    +   +  L
Sbjct: 470 DIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLADEKF-NISSSKQL 528

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF   GI     ++    T  +IL       +    +L            +  L + 
Sbjct: 529 GLILFDKLGIPAGKKTKTGYSTAANILDKLKDKYVIVAKVLEYRQYKKLHSTYVVGLLKL 588

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  + +L  T      + TGR S      QN+P                           
Sbjct: 589 LDKNNKLHSTFNQTV-TATGRISSAEPNLQNIP------------------------IRL 623

Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I S +    + AD + IE RVLA ++ +    +AF  G DI+ +T ++ F
Sbjct: 624 ALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGIDIHTSTASEVF 683

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
               D V++ QR   K +   +                G+                    
Sbjct: 684 GV--DTVTQAQRNAAKAVNFGVV--------------YGIS------------------- 708

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                          A   ++         + + AK+  V      L             
Sbjct: 709 -----------AFSLADDIQVSNQEATEYIENYFAKYPNVKHYLDSL------------- 744

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                        +   +   + V   +R+    ++            ++          
Sbjct: 745 -------------ITTSQATGYGVTLLNRKRNIVELFSSNFNTKEYGKRI---------A 782

Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
               +Q  + DI+ + M             ++LTVHDE++ E   +    +  L    M 
Sbjct: 783 MNMPIQGTAADIIKKAMIQVHNALKGTRSTLILTVHDELLLEVHKSEIEHITKLLKTEME 842

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
                A  +PL  +      +
Sbjct: 843 SAVKLA--VPLLVDVKSGXSW 861


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/733 (11%), Positives = 181/733 (24%), Gaps = 207/733 (28%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQS--------------AMPSDLL-QYLRDETVMCVA 70
               V+   ++             +                 + S +  + + +  ++ + 
Sbjct: 471  HNPVMAGISFCISPGQAYYLPFFKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIG 530

Query: 71   HNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL-ALNFSE----HL 122
            HN  +   +        +  K +    V++           +       L          
Sbjct: 531  HNIKYHIKMLANY---GVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIP 587

Query: 123  TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
             K   G          +                      +  +  + T++ +  L    D
Sbjct: 588  EKEVLGIGKKKVTLMEADIVS---------------VVHFACQHADLTKQAYDVLKSALD 632

Query: 183  G-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226
                        E+ L      I  +G  +D   ++K++    ++ K +   I +     
Sbjct: 633  KSPKLTQFYEGIEKPLVETLAGIEMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYP 692

Query: 227  --------------------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
                                             +      L   +F   GI    + + T
Sbjct: 693  TIDEDIEIPTSEEEIESMIIEMDEMKQEASEEFNINSNRQLGQVIFEKLGI-GTKLRKKT 751

Query: 261  --------LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                     + +   +         IL   A +      ++ L + ++   +   T    
Sbjct: 752  KVGDYILNAEVLQKLAAEGHSIAKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQN 811

Query: 313  GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-AS 371
              + TGR S  +   QN+P                                +R C I  S
Sbjct: 812  ALTVTGRLSSVMPNIQNIP------------------------VRTAEGKQIRRCFISPS 847

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            +   ++  D + +E R+LA IA       AF   +D++  T ++ FN P+D+V K  R  
Sbjct: 848  DDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPLDQVDKSTRNK 907

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
             K +   + Y               + +   +                            
Sbjct: 908  AKAINFGIIYGMS-----EFGLSKRIGVDTQA---------------------------- 934

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                        +   + +  ++ G+        E            + R          
Sbjct: 935  -----------AKSFIEQYFKQYPGIKNYMTKTIEFCRKHGYVNTLFNRRCWI------- 976

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                                    +       +S   R            +Q  S DI  
Sbjct: 977  ---------------------PGIEDQGFGGKSSFGERTSI------NTPIQGTSADITK 1009

Query: 612  EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKG---- 660
              M +  K          +++ VHDEIV E P     +V   +  LM    ++  G    
Sbjct: 1010 IAMNSLHKAFQEKGLRTRMIIQVHDEIVFEVPKDEVETVEPIIKELMEGA-AFFGGTNFT 1068

Query: 661  LPLKAEGYEAKRY 673
            +PL  E     ++
Sbjct: 1069 VPLTVEATVDSKW 1081


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/684 (13%), Positives = 186/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +   A    +            ++       +    +      +L+ 
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    L IDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLEIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/640 (14%), Positives = 173/640 (27%), Gaps = 141/640 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKAVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  V   L   M         +PL  +    + + K
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/655 (15%), Positives = 184/655 (28%), Gaps = 139/655 (21%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
                   T   A+   LL  L D    + +  V H+      +F+      +       
Sbjct: 347 GRYYYVPET---ALVEALLGALNDLPNADALGIVGHDLKALTHIFEAQGAQLVKMD--FD 401

Query: 96  TSVLARTN---GLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           T V A           LK+     L+ +    +   GK    R                 
Sbjct: 402 TYVAAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRTRRALAEIAAPERAAFIVGE 461

Query: 152 HVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                 L  E   +  E     L++++      E  L  +  ++   G++ID + +  L 
Sbjct: 462 CAAIHGLHAELAHQLEEMEMTALYQKI------ELPLIPVLASMESIGFKIDQEQLKNLS 515

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
                  + L   I +   G   +   T  L M LF   G+  +  ++    T   +L  
Sbjct: 516 AHFEARIETLTRQIYEEA-GQRFNINSTKQLGMILFEEMGLPPIKKTKTGYSTSVEVLEQ 574

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                   D IL     +         L + V     ++         + TGR S     
Sbjct: 575 LRPYNTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFNQTV-TATGRISSSDPN 633

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P                                +R   + S     LV AD + IE
Sbjct: 634 LQNIP------------------------VRTDLGREIRRVFVPSSPMCVLVDADYSQIE 669

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +  ++  ++AFA  +DI+  T ++ F  P++ V++EQR+               
Sbjct: 670 LRVLAHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHA------------- 716

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                                          +A +  L    Q      +  +     + 
Sbjct: 717 -------------------------------KAINFGLIYGKQAFSLGKELGIGRNQAQD 745

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               + +++  V    K + E                                       
Sbjct: 746 YIDMYFSRYPKVYAYMKAIREEAKTKGYVTTLY--------------------------G 779

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-- 623
           RR    +++     +  +  ++              +Q  + DI+   M           
Sbjct: 780 RRRYIPEIQSRNRMIVQSGERM---------ALNTPIQGSAADIMKIAMVKVYHRLAKES 830

Query: 624 ----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++L +HDE++ E P+T     +  L   M    S    +PL  +    K +
Sbjct: 831 FRSHLLLQIHDELIIEAPETESEKILRLLTEEMENAVS--LSVPLVVDARIGKSW 883


>gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
 gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
          Length = 895

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/631 (14%), Positives = 185/631 (29%), Gaps = 126/631 (19%)

Query: 56  DLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
           +L   + +  ++    N    F   +  K LG+ +    +    + A       +   L 
Sbjct: 374 ELRSVIENAAIIKNVFNVKAQF---VLFKRLGMTLRGVEF-DFLLAAYLLDTTDNDNELS 429

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                 +F     +   GK       + +     +   +A+ +   +       +D E T
Sbjct: 430 TLAQRFDFYVTPDEDIYGKGAKYAVPEETSRVLVHLAHKADVLMQLEQPAFAALQDHEQT 489

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                     ++ E  L  +   +  RG +ID   + ++   + +    + ++ + +  G
Sbjct: 490 HL-------YTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTI-KEAIFIEAG 541

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
            + +      L + LF   G+ ++  ++    T   +L          D IL     +  
Sbjct: 542 EVFNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVDHILQYRQLAKL 601

Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L   V   D ++         ++TGR S      QN+P               
Sbjct: 602 KSTYVDGLLSVVHEKDSKIHTRFLQT-LTQTGRLSSIDPNLQNIP--------------- 645

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                        A   +R+  + S    ++  AD + IE RVLA + G+    +AF NG
Sbjct: 646 ---------MRTEAGRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLNG 696

Query: 406 EDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           EDI+  T    F    +  V    R   K +   + Y               L + +   
Sbjct: 697 EDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYG-----ISDFGLANNLGISRAEA 751

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + F+++ +       ++ +  E    + +            R     +     +L
Sbjct: 752 KRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKR---------RRYLPEIGSKNFNL 802

Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                   +      SA  +  +  + +                                
Sbjct: 803 RSFAERTAMNSPIQGSAADIIKIAMIKV-------------------------------- 830

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                        L EN +QA                   ++L VHDE++ E P      
Sbjct: 831 ----------ADALQENGMQA------------------RMLLQVHDELIFEAPSDEIAE 862

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  L   +M         +P+  E +    +
Sbjct: 863 LSELVTRVMDSAV--VLDVPMLVESHSGNTW 891


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 179/663 (26%), Gaps = 130/663 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLFERIL 79
           +   A+A             +            +   L   +    +   AH        
Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVE-AALPLHAHELKAAAHA 399

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFC 136
             + LG+         T +++R         +L +            ++    A  A+  
Sbjct: 400 LAR-LGLARSGPG-EDTELMSRLLLPTRREHALVDVAR----ERTSCELPRNPADGAKRG 453

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTIN 195
              ++    +   A          +   +  E    E    L    + ER L  +   + 
Sbjct: 454 APGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR--EVERPLVPVLVEME 511

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G  +D   +  +     +  + L+  I         +   T  L   LF+   + +V 
Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF-NVASTRELAQVLFVELELPVVK 570

Query: 256 ---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311
                  T + +L           L+L   + S      ++ L + V   DGR+  T   
Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQ 630

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA  TGR S      QN+P                             S  +R   +A 
Sbjct: 631 AGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRQAFVAP 665

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G +L+ AD + IE R+LA  + +   ++AF + ED++  T A+ F  P ++V+ +QR I
Sbjct: 666 AGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQRRI 725

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            KV+   + Y               LDL            F  +     +  W  ++   
Sbjct: 726 AKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARA 780

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 L G A              +      L                           
Sbjct: 781 KGESRTLFGRA---------RTMPEIGARNPALRNAAERTAINTPIQGTAADIV------ 825

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                          ++    V    +    A                            
Sbjct: 826 ---------------KIAMIRVHDALAQERRAAR-------------------------- 844

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670
                       ++L VHDE+V E P+     V  L    M         +PL+ +    
Sbjct: 845 ------------LLLQVHDELVLEVPERELAPVEALVRREMEGAAR--LKVPLEVQVGHG 890

Query: 671 KRY 673
           + +
Sbjct: 891 QTW 893


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/640 (14%), Positives = 172/640 (26%), Gaps = 141/640 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E  +   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKAFKEFFENEDTLKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                  V   L   M         +PL  +    + + K
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +        +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                   +Q M+E
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
            TY  KL                            L VHDE++ E P +   S    +  
Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/638 (14%), Positives = 172/638 (26%), Gaps = 141/638 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGITFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKAVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  V   L   M         +PL  +    + +
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/665 (13%), Positives = 179/665 (26%), Gaps = 135/665 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL 84
            +   A +  ++     D T               L D  +    H+   F  I++    
Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNF--IVYLNNR 398

Query: 85  GIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSI 140
           GID     +  T + A          ++       LN S    +   GK       K   
Sbjct: 399 GIDFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQ 457

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTI 194
                              G Y     + +R++   L          D E  L      +
Sbjct: 458 PDVLSK-----------TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADM 506

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G+++++D +++  + + ++   + ++I  L      +      L + LF   G+ ++
Sbjct: 507 EYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPII 565

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
             ++    T   +L   +      + IL               L   ++   G++  +  
Sbjct: 566 KKTKTGYSTDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN 625

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   I 
Sbjct: 626 QTV-TATGRISSTEPNLQNIP------------------------IKLEMGRKIRKVFIP 660

Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
                 L+ AD + IE RVLA I  ++  I AF N EDI+ +T A  F  P ++V+   R
Sbjct: 661 SDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMR 720

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K +   + Y  G       +    L + +           + +   + +   + ++ 
Sbjct: 721 SRAKAVNFGIVYGIG-----DFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEG 775

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            E      +            R     +     ++      V        +         
Sbjct: 776 KEKGFVTTMFMR---------RRYLPELKSRNFNIRSFGERVAMNTPIQGSAADII---- 822

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            ++    V G+                   KL   ++       
Sbjct: 823 -----------------KIAMVKVHGELKKR---------------KLKSRLI------- 843

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
                                 ++ ET       V  +    M    S    +PL  E  
Sbjct: 844 -----LQVHDE-----------LIVETFKDEKEEVEKILLEGMQNAVS--LKVPLVVEIK 885

Query: 669 EAKRY 673
               +
Sbjct: 886 SGSNW 890


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/682 (14%), Positives = 201/682 (29%), Gaps = 150/682 (21%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----RDETVMCVAHNS 73
           K+ V+AY E   + + AY      V      E+ AM S     L      +++  V H+ 
Sbjct: 324 KLTVYAYREDDRVWVAAY---IGGVYY--FVEKPAMVSAFFSGLGEIPEADSLQTVGHDL 378

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGK 129
                +        +       T + A           L+      L  +    +   G+
Sbjct: 379 KNLTHI--YHSQCSVIVNYTFDTYIGAYLLNPSDQRYDLQTVAMKYLGDTIQSEEDFFGR 436

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDG 183
                                +  +      + C+      + L +++          + 
Sbjct: 437 GK-----------TLVRAEDMDSARLAAFMVKNCEVIHRLEKPLAEKIEADGMTGLFQNI 485

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +  ++ + G+++D+  + +L     ++ + L  +I +L +    +   T  L  
Sbjct: 486 ELPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGT 545

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
            LF    + +V  ++    T   +L    +       I++    S         L + V 
Sbjct: 546 ILFDKLKLPVVKKTKTGYSTNAEVLDQLVLFHPIIQKIIDYRMISKLDSTYGKGLIKLVD 605

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               ++  T      + TGR S      QN+P                            
Sbjct: 606 PKTHKIYSTFNQTV-TATGRLSSSDPNLQNIP------------------------VKTE 640

Query: 360 ASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S G + LV AD + IE RVLA ++G++  I  F   +DI+  T ++ FN
Sbjct: 641 MGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFN 700

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            P+D VS+EQR+  K +   L                                       
Sbjct: 701 VPMDAVSREQRSHAKAINFGLI-------------------------------------- 722

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                    Q         +     +     + +++  VL+  +++              
Sbjct: 723 ------YGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKVLEYMENIKAEAKEKGYVTTIW 776

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                                      RR   +++      L  A  ++           
Sbjct: 777 --------------------------GRRRYITEINSRNRMLVQAGERM---------AL 801

Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651
              +Q  + DI+   M               ++L VHDE++ +T  T   +V   L   M
Sbjct: 802 NTPIQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKLLVEEM 861

Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673
                    +PL  + +    +
Sbjct: 862 ENAVD--LKVPLTVDAHAGDSW 881


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/639 (13%), Positives = 178/639 (27%), Gaps = 146/639 (22%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIP-SKRWICTSVLARTNGL 105
             +      L      E V  V+H    +  +    L  +D+  +K      + A     
Sbjct: 373 ENKDKTIEILKTIFEKEAVRVVSH----DVKVLSMALKKLDVEFTKALFDLKIAAYLIDS 428

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             S                  +   LI       +        R   +          + 
Sbjct: 429 SKS----------------DYDLSTLIQECLSKIVKDDEEREIRETSLLEKLCANLKEQI 472

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
                 +L+       + E  L  +   +   G+++D +++  + + + +E +K+ ++I 
Sbjct: 473 INLEMEKLYY------EVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIY 526

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282
           +L D    +      L   LF    + ++  ++    T   +L            I    
Sbjct: 527 ELADEEF-NVNSPKQLGKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYR 585

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +      +  L   +  DGR+  +      + TGR S      QN+P           
Sbjct: 586 QLTKLYSTYVEGLKNVIDEDGRIHSSFNQTV-TTTGRLSSTEPNLQNIP----------- 633

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                VR   + +     ++ AD + IE RVLA IA ++  I A
Sbjct: 634 -------------IKYEMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINA 680

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F +  DI+  T ++ F  PID+V+   R   K +   + Y  G                 
Sbjct: 681 FKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIGDFSL------------- 727

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A   K+     +     +  ++  V +  
Sbjct: 728 -------------------------------AKDLKISRKEAKGYIDTYFERYPNVKKYM 756

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +  +     +     ++ RR                        +       G+   +N
Sbjct: 757 DETIDKAKRDMYVTTILNRRRFIPEI-----------------GNKNKIVKALGERLAMN 799

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSE 635
           T                   +Q  + DI+   M               I+L VHDE++  
Sbjct: 800 T------------------PIQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDELILN 841

Query: 636 TPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                   + ++    M         +PL+ +  E + +
Sbjct: 842 VYKDELEEIKSIVKDSMENVLP--LSVPLEVDINEGENW 878


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 153/665 (23%)

Query: 28  AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81
           A     +    D  V +        +      L   L D+ V     N  F+     +  
Sbjct: 339 ADFVGFSLKMGDN-VYVSNDVSLLTKQP----LQTLLEDQAVNK---NV-FDLKRTIVGL 389

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135
             LGI   +  +    + +      ++  +           +    +     GK   A  
Sbjct: 390 HRLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDV--DIYGKGKKA-- 444

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                D   +    A  V A +            T      L      E  +  +   + 
Sbjct: 445 --AIPDEEIFFNHLAGKVLAIEALKP--TLLKRLTEHEQDDLYETI--EMPVANVLAKME 498

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G + D   +++L     Q   +L+ DI  L  G   +      L   LF    +  + 
Sbjct: 499 ITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPIK 557

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T   +L            +L+    +      +  L + +  DGR+    Q  
Sbjct: 558 KTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYQQT 617

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370
             + TGR S      QN+P                                +R   I   
Sbjct: 618 -LTATGRLSSVDPNLQNIP------------------------VRLEEGKKIRKAFIPSN 652

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
            +G      D + +E RVLA ++G++   +AF  G DI+  T  K F+    D+V+   R
Sbjct: 653 KDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTPNMR 711

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   +                G+     S+N                        
Sbjct: 712 RHAKAVNFGIV--------------YGISDYGLSKN------------------------ 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +     +  ++  +                    +           
Sbjct: 734 ------LGISRKQAKEFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMH---------- 777

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      + +      R          + +Q  + DI
Sbjct: 778 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGGAADI 812

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M N  K          +++ VHDE++ + P     ++  +   +M         +P
Sbjct: 813 IKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--LDVP 870

Query: 663 LKAEG 667
           L A+ 
Sbjct: 871 LVADS 875


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/669 (13%), Positives = 175/669 (26%), Gaps = 157/669 (23%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80
           +A+QA +      +  E        +      +   L           + H         
Sbjct: 337 FADQAGLGGIGLCFSKEESYCIKVEKDITGEWLLKKLADVAEKAETYAMFH--------L 388

Query: 81  KKTL-GIDI-PSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIAR 134
           K+++  + I         SV A          + ++     L         ++ KA    
Sbjct: 389 KESMEQVTIRNQANCFDVSVAAYLLNPLKNNYTWEDVAREHLGLMIDEKIDQDMKACYES 448

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           +   +         R   +                            D E  L      +
Sbjct: 449 YVNYASVEVLRQKLRDTKMDTL-----------------------FRDIEMPLVFTLFDM 485

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G R++ D + +  + +A +  +L+++I +   G   +      L + LF    +   
Sbjct: 486 EQNGIRVEADALKQYGDQLAGKIAELEKEIYEEA-GETFNINSPKQLGVVLFENMKLPGG 544

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             ++    T   +L            IL     +       + L+  +  DGR+ G    
Sbjct: 545 RKTKTGYSTAADVLEKLAPEHPVVAKILEYRQYTKLKSTYADGLANYIQDDGRIHGKFNQ 604

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P                                +R   I  
Sbjct: 605 T-ITATGRISSTEPNLQNIP------------------------VRMELGRLIRKVFIPE 639

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G + V AD + IE RVLA  +G++  I+A+    DI+  T ++ F+ P D+V+ +QR  
Sbjct: 640 EGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVTPQQRRN 699

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +   + Y        +      L                                  
Sbjct: 700 AKAVNFGIVYG-----ISSFGLSQDLS--------------------------------- 721

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 +           + A + G+                       RR         
Sbjct: 722 ------ITRKEAAKYIDDYFATYPGIKTFLDHAVTHAKEEGYVVTLFGRRRPVPELSSSN 775

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                                  G+   +                   + +Q  + DI+ 
Sbjct: 776 FMQ-----------------RSFGERVAM------------------NSPIQGAAADIIK 800

Query: 612 EGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664
             M          K    +VL VHDE++ E  +     V  +    M         +PL+
Sbjct: 801 IAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAAE--LKVPLE 858

Query: 665 AEGYEAKRY 673
            + +    +
Sbjct: 859 IDMHTGDNW 867


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/638 (14%), Positives = 172/638 (26%), Gaps = 141/638 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYNLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ D++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  V   L   M         +PL  +    + +
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/538 (16%), Positives = 155/538 (28%), Gaps = 116/538 (21%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDL 203
            A      Y   D + T  L++ + P    ER           L  +   +   G RID 
Sbjct: 42  VAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVPVLARMERAGIRIDR 101

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---- 259
           +++ +L    +Q   +L+E+I +      +       +   LF   G+     +      
Sbjct: 102 NMLSRLSGDFSQILARLEEEIQEDAGEKFQ-VSSPKQIGDVLFGKLGLPGAKKTPSGQWA 160

Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T  ++L             ILN    +       ++L E    +     T     A+ TG
Sbjct: 161 TPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNRVHTSFSLAATTTG 220

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   +A  GKKL+ 
Sbjct: 221 RLSSSEPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKKLIS 256

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA IA      +AF  G DI+  T +  F  P+D+++ + R   K +   
Sbjct: 257 ADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFG 316

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +   +      FE +     +    +    E      L
Sbjct: 317 IIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTL 371

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G  C          +  +                                         
Sbjct: 372 FGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA----------------- 405

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                +    + L  +R              +R           
Sbjct: 406 --------------ADIIRRAMTRMEAALEAKRL------------TAR----------- 428

Query: 619 KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
                ++L VHDE+V E PD     ++  +  +M + P+ A    +PL  E   A  +
Sbjct: 429 -----MLLQVHDELVFEVPDDEVEATIPVIAEVMEQAPAPALTLSVPLVVEARAAGNW 481


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 185/676 (27%), Gaps = 146/676 (21%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM---CVAHNSL-- 74
           G+    E   ++  A A +D  V      +       L   + D   +       N    
Sbjct: 324 GLKLLYEDGCVSGAALAHEDNSVCYIPV-QGFVTEDYLKAKITDMAAVCDCIAGLNIKSV 382

Query: 75  ---FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEE 127
               +R +            + I   + A          S        LN          
Sbjct: 383 LPAIDRQV----------YPKLIDAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNELT 432

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           G          +      +  R   ++A+ +   +    V+      K L    D E  L
Sbjct: 433 G----RMSYAEASMVKSEELARLACMEAYCVRHAWNVISVKLDEVQMKHLFD--DIEMPL 486

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G  +D   + +  + +A    +L+  I +L      +      L   LF 
Sbjct: 487 VFVLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELAGTKF-NINSPKQLGTVLFE 545

Query: 248 ITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
              +     ++    T   +L            IL     +       + L+  +  DGR
Sbjct: 546 DMKLPSGKKTKSGYSTAADVLEKLAPEYPVVAKILEYRQLTKLKSTYADGLAVYILEDGR 605

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           + G       + TGR S      QN+P                                +
Sbjct: 606 IHGHFNQT-ITATGRISSTEPNLQNIP------------------------VRMEIGRQI 640

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +   G   + AD + IE R+LA ++ +D  I A+   +DI+  T ++ F+ P+D+V
Sbjct: 641 RKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQVFHVPLDEV 700

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           ++ QR+  K +   + Y        +      L                           
Sbjct: 701 TRTQRSNAKAVNFGIIYG-----ISSFGLSQDLS-------------------------- 729

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                        +         + + A +  + +    L                    
Sbjct: 730 -------------ISRKEASEYIEQYFATYPHIKEFIDGLVASAKKNGYSTTMF------ 770

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                RR    ++               R          + +Q 
Sbjct: 771 --------------------GRRRPVPELNSSNFMQRQFG---ERIAM------NSPIQG 801

Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSW 657
            + DI+   M N ++          ++L VHDE++ ET +    +V  +    MT   S 
Sbjct: 802 SAADIIKIAMINVSRALKDNNLKSKMILQVHDELLIETYEDEVDAVRQILIDNMTNAAS- 860

Query: 658 AKGLPLKAEGYEAKRY 673
              +PL+ +  E   +
Sbjct: 861 -LRVPLEVDVKEGHDW 875


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/638 (13%), Positives = 172/638 (26%), Gaps = 141/638 (22%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             ++        ++  +E ++   ++        KK LGID     + C  + A      
Sbjct: 355 LVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                       S                 K        +                 K +
Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E    L      + D E  L  +  ++   G++++ +++ +L     +E ++  ++I +
Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFE 511

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L D    +      L   LF    + ++  ++    T   +L          + I     
Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S      +  L   + +DG +  T      + TGR S      QN+P            
Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617

Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   I    G  L+ AD + IE RVLA I+G++  I AF
Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+  T ++ F  P+++V+   R+  K +   + Y  G                  
Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +     +     +  ++  + +   
Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +             ++ RR                 IV     RL              
Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
                              +Q  + DI+   M N             ++L VHDE++   
Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  V   L   M         +PL  +    + +
Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D   +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 106/665 (15%), Positives = 203/665 (30%), Gaps = 136/665 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             +   A A  D      D T  +      L  +L D  V    H +        +  G 
Sbjct: 358 GDVQALAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHAL-RGRGW 416

Query: 87  DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            +       T++ A          +L +  L     E   + ++   L     + ++D+ 
Sbjct: 417 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAE 475

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                    ++A  +       D E  +     L  L+D E  L  +  T+ + G  +D 
Sbjct: 476 TARAEM---LRARAVLDLAAALDAELEQIESTAL--LTDMELPLLGVLATLEEAGIAVDC 530

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---- 259
           + +  LQ   A +  +   +      G   +      L++ LF    +     ++     
Sbjct: 531 EQLEALQRQFADKVAQA-AEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTT 589

Query: 260 ---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
               L+S+   +    L    +L    ++   +  ++ L ++V+ DGR+  T     A  
Sbjct: 590 DADALESLFEKTQHPFLEH--LLAHRDATRLKVT-VDGLLKSVADDGRIHTTFNQTIA-A 645

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                                +R   +   G  +
Sbjct: 646 TGRLSSTEPNLQNIP------------------------IRTDTGRMIRDTFVVGPGYAE 681

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G++  I+AF +GED++    +KAF+ PI +VS E R   K M
Sbjct: 682 LMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAM 741

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        +      L                                      
Sbjct: 742 SYGLAYG-----LSSYGLSAQL-------------------------------------- 758

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     +     + ++   +     ++ E    V                        
Sbjct: 759 -KISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLF----------------- 800

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+         A  ++              +Q  + DI+   M 
Sbjct: 801 ---------GRRRYLPDLDSSNRQRREAAERM---------ALNAPIQGTAADIIKVAMI 842

Query: 616 NATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
           +  +          ++L +HDE+V E  +    ++  L    M+     A  +PL     
Sbjct: 843 DVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAI--ALSVPLDVSVG 900

Query: 669 EAKRY 673
             + +
Sbjct: 901 TGRSW 905


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/665 (14%), Positives = 180/665 (27%), Gaps = 153/665 (23%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----- 82
           A     A     E     D       P  L + L D  V     N  F+    K+     
Sbjct: 338 ADFAGFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-FD---LKRTTYGL 388

Query: 83  -TLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135
             LGI      +    + +       +  +           +    L     GK   A+ 
Sbjct: 389 YRLGIKAEGLSF-DLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDL--EVYGKGKNAKI 445

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                    +   +   + A +       +D E        L      E     +   + 
Sbjct: 446 PADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKME 498

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G ++    + +L+   A   K+L+E I K       +      L + LF   G+ ++ 
Sbjct: 499 MNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIK 557

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311
            ++    T   +L+           IL     S      +  L + +   DGR+      
Sbjct: 558 KTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQ 617

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370
              + TGR S      QN+P                                +R   +  
Sbjct: 618 T-LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPS 652

Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
             +G  +   D + IE RVLA ++ +    +AF  G DI+  T  K F+   +D+V+  Q
Sbjct: 653 SPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQ 711

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               LD                              
Sbjct: 712 RRRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------ 736

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    +     +     +  ++ G+        +           +          
Sbjct: 737 ---------ISRKQAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMH--------- 778

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    D+      + +      R          + +Q  + D
Sbjct: 779 -----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAAD 812

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           I+   M N  K          +V+ VHDE++ + P     ++  +  S+M         +
Sbjct: 813 IMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDV 870

Query: 662 PLKAE 666
           PL A+
Sbjct: 871 PLVAD 875


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/597 (13%), Positives = 154/597 (25%), Gaps = 127/597 (21%)

Query: 91  KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           K     ++ A             +     L       K    K          +      
Sbjct: 393 KSIFDAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRKSIFEEGKLLPEGEQI 452

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                +V    +     K        L++      + E    +    +  RG  +D   +
Sbjct: 453 IGYEAYVACACIEPLRKKLTETGMLSLYE------EIEIPTMVALHDMEVRGIHVDRKAL 506

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +  + +    ++L E I K       +      L + LF    ++    ++    T   
Sbjct: 507 KEYGDQLIGRIEELRELIYKEAGEEF-NINSPKQLGVVLFEHMKLEGGKKTKTGYSTSVD 565

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +       + L+  +  D R+ G       + TGR S  
Sbjct: 566 VLEKIEHLYPIISYILEYRQLTKLKSTYADGLANYIGDDERIHGKFNQT-ITATGRISST 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +   G   V AD + 
Sbjct: 625 EPNLQNIP------------------------ARVELGRAIRKVFLPEEGYTFVDADYSQ 660

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++G+   I A+   +DI+  T ++ F  PID+VS  QR   K +   + Y  
Sbjct: 661 IELRVLAHLSGDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYG- 719

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          FE + + + +     ++  E      +     
Sbjct: 720 ----LSAFGLSQDLKITRKQAQEYIDKYFETYPKVKEYLNREVEKGKEEGFVTTMFQRIR 775

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +                                              
Sbjct: 776 PI---------PELKSSNFMQRN------------------------------------- 789

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618
                      G+   +N+                       + DI+   M         
Sbjct: 790 ----------FGERVAMNSPIQG------------------SAADIIKIAMIRVNMELKK 821

Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            K    ++L +HDE++ E  D+    V  +    M         +PL  + +    +
Sbjct: 822 RKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK--LSVPLSIDIHTGNSW 876


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 95/660 (14%), Positives = 189/660 (28%), Gaps = 136/660 (20%)

Query: 31  TLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
              A +  +  V    D    +   +DL  +L+DET      +S   + +  + LGI++ 
Sbjct: 332 LGLALSDGERTVYTAIDNVVDN---ADLKAWLQDETKKKYIVDSKATQAMLHR-LGIELK 387

Query: 90  SKRWICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKGSIDSPPY 145
              +    + +       S  +         + +    +   GK    ++     D    
Sbjct: 388 GVEF-DLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGA--KWVVPGADHVAE 444

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
             +R    +A  ++      D +        L    + E  L  +   +   G  +++D 
Sbjct: 445 HVSR----KAVAVWKLQPLLDQKLKENEQFELYK--ELELPLAHILGKMESEGITVNIDT 498

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           + ++ + +  + + ++  I +L      +      L + LF   G+ ++  ++    T  
Sbjct: 499 LRQMGDDLKAKLEVMEATIYELAGEKF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAA 557

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL     +      +  L + V  +     T      + TGR S 
Sbjct: 558 DVLEKLQSEHDIVKYILEYRTLAKLQSTYIEGLIKEVHKEDSKVHTRFQQALTSTGRLSS 617

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +       L  AD 
Sbjct: 618 TNPNLQNIP------------------------IRLEEGRKIRKAFVPSKKDWILFAADY 653

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440
           + IE RVLA + G++  ++AF  G DI+  T    FN    D+V+   R   K +     
Sbjct: 654 SQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNF--- 710

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     SQ++                               +  
Sbjct: 711 -----------GIVYGISDYGLSQSLD------------------------------ITR 729

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +  + +     GV        E           ++                     
Sbjct: 730 KEAAIFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTILN--------------------- 768

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----N 616
                RR    D+      L +   +               +Q  + DI+ + M      
Sbjct: 769 -----RRRYLPDITSSNFNLRSFAERT---------AMNTPIQGSAADIIKKAMIDMNAR 814

Query: 617 ATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             + G    ++L VHDE++ E P      +  +   +M         +PLK E      +
Sbjct: 815 LEQEGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENAIK--LSVPLKVEFSYGATW 872


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 152/440 (34%), Positives = 226/440 (51%), Gaps = 16/440 (3%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T   H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  +   
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G +        L+          + +  + TL  +L+  ++   A+ +I  RL ++ +A 
Sbjct: 241 GSLTGKDFLPILQELAPAHR---IHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            K   L    SSD R RG LQ+ GA RT RW+G  FQPQNL R    ++ L + I AL +
Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357

Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           G      D   L +  VRSCII   G+K VVAD + +E R LAW+AGE+  +  F  G D
Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417

Query: 408 IYVTTYAKAFNTPIDKVSKE 427
           IY  T  K F    D + KE
Sbjct: 418 IYCVTAGKMFGMDPDDIKKE 437


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/628 (13%), Positives = 183/628 (29%), Gaps = 120/628 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112
           +L   + +  +     N    +++  K LG+ +   ++    ++A       +   +   
Sbjct: 372 ELRAVIENGDIKKNVFNVKA-QLILFKRLGLTLKGAQF-DFLLVAYLLDTTDNDNEMSTL 429

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +      +   GK               +   +A+ +   ++      +  + T  
Sbjct: 430 AQRFDVYLTEDEEIYGKGAKYAVPDDEELVLMHLAHKADALIQLEMPALSALQSHQQTHL 489

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                   ++ E  L  +   +  +G++ID   +  + E +      ++E I  L  G  
Sbjct: 490 -------YTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIY-LEAGEK 541

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+ ++  ++    T   +L          + IL     +    
Sbjct: 542 FNLNSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVEHILQYRQLAKIKS 601

Query: 290 LKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +  L   V   D ++         ++TGR S      QN+P                 
Sbjct: 602 TYVEGLLAVVHTEDSKIHTRFLQT-LTQTGRLSSVDPNLQNIP----------------- 643

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   + S    ++  AD + IE RVLA I G+    +AF NGED
Sbjct: 644 -------MRTEEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQRAFLNGED 696

Query: 408 IYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           I+  T    F    +  V    R   K +   + Y               L + +     
Sbjct: 697 IHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYG-----ISDYGLSNNLGISRAEAKR 751

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + F+++ Q       ++ Q  E    + +            R     +     +L  
Sbjct: 752 FIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKR---------RRYLPEIKSKNFNLRS 802

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                              + +N+    
Sbjct: 803 FAER-----------------------------------------------TAMNSPIQG 815

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                    K+    V     D L +      +   +I+L VHDE++ E P+    ++  
Sbjct: 816 ---SAADIIKIAMIKV----ADALKD-----NQLQANILLQVHDELIFEAPEDEIETLRD 863

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +M      A  +P++ + +    +
Sbjct: 864 IVTRVMDSAV--ALDVPMQVDSHYGNTW 889


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 102/653 (15%), Positives = 185/653 (28%), Gaps = 163/653 (24%)

Query: 38  DDEPVKLWDRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           D E  K +     + +       + + D+    + H      +  +K L      +    
Sbjct: 321 DGEKTKFYSLDRLNEIEEIFRNKKIITDDAKG-IYH------VCLEKGLTF---PEVCFD 370

Query: 96  TSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
             + A           LK     L +   + +                            
Sbjct: 371 ARIAAYVLNPADQNPGLKGL--YLKYDLPVYEDV-------------------------S 403

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           +    LF    +   +   +  +RL    + E  L  +   +   G ++D + + ++   
Sbjct: 404 LNIRGLFYLKKEMMKKIFEQEQERLF--YEIELPLTPVLAQMEHTGIQVDREALKEMSLE 461

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           + ++ ++L  +I  L      +      L + LF   G+ ++  ++    T   +L    
Sbjct: 462 LGEQIEELIREIYVLAGEEF-NLNSPRQLGVILFEKLGLPVIKKTKTGYSTDAEVLEELL 520

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   ILN            + L   ++   G+L  T    G + TGR +      Q
Sbjct: 521 PFHEIIGKILNYRQLMKLKSTYTDGLMPLINERTGKLHTTFNQTG-TLTGRLASSEPNLQ 579

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEAR 387
           N+P                                +R   I S G   +V AD + IE R
Sbjct: 580 NIP------------------------IRLELGRKLRKMFIPSPGYDYIVSADYSQIELR 615

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA  + E   I+A+  GEDI+  T ++ F   +++V+ E RA  K +   + Y      
Sbjct: 616 LLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDFG 675

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                                                            K+         
Sbjct: 676 L--------------------------------------------GRDLKIPREVAGKYI 691

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           K + A +  V +   +L                RR         R  +            
Sbjct: 692 KNYFANYPKVREYLDELVRTAREKGYVTTLFGRRRYIPELSSKNRTVQG----------- 740

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------G 621
                  G+ + +NT                    Q  + DI+   M N  K        
Sbjct: 741 ------FGERTAMNTPL------------------QGSAADIIKLAMINVEKELKARKLK 776

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
             ++L+VHDE+V E P      V  L   +M         +PL AE    K +
Sbjct: 777 SRLLLSVHDELVLEVPAEELEEVKALVKGVMESVVE--LKVPLIAEVGAGKNW 827


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 94/689 (13%), Positives = 188/689 (27%), Gaps = 141/689 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---------SAM 53
            +  D ET     +             +   +++++DE                     +
Sbjct: 338 IVAFDTETTGLDYI----------NNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDV 387

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111
               ++ + +  V  V HN  F+     + L  +     +  + +LA         SL  
Sbjct: 388 AKQAMRRIFNSKV--VGHNIKFDLHFVTRFL-EEKDLPVYCDSMILAWLINPESALSLDK 444

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       K    K           D+  Y    A   +             +AT
Sbjct: 445 LSDKLLGHEMVHFKDTV-KKGENFSTVELDDACVYAAEDAFITRKLYKLFLKKLELQDAT 503

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                 +      E         + + G  +D   + K    + +  + L + I +L   
Sbjct: 504 ----HLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEKFLVEVKETLEYLTKSIYELAGS 559

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +   T  L   LF   G+ +   ++    T + +LS           +L        
Sbjct: 560 EF-NINSTQQLGNILFEKLGLPVGKKTKTGYSTNEKVLSSLKDKHPIIPKLLEYREVHKL 618

Query: 288 AILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
               ++ L +  + D   R+  +    G + TGR S      QN+P              
Sbjct: 619 YSTYIDPLLKLANEDEQHRIHTSFVQTG-TATGRLSSKNPNLQNIP-------------- 663

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  GKK +  D + +E R+LA  + +   + AF + 
Sbjct: 664 ----------TRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHD 713

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +DI++ T    F    ++ +  +R I K +   L Y  G K          L +      
Sbjct: 714 KDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGPKKLSDT-----LGITTKEAK 765

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                 FE +   +++   + +   E    + L+G         +               
Sbjct: 766 EIIEKYFESFHTVKAYFRSIVESSKEKGYVETLLGRRRYF---DYENATPMY-------- 814

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                   E  S+++    +V  ++                +L  + +            
Sbjct: 815 ----RAAYERESVNSVFQGSVSDVI----------------KLSMNKIH----------- 843

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                     KL     QA       + +                 ++ E  +     +G
Sbjct: 844 ----TIINEEKL-----QA-------KMLLQIHDE-----------LIFEVDEKVADELG 876

Query: 646 -TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +M         +PLKA       +
Sbjct: 877 NRFRDIMDHIVE--LNIPLKASLNIGDNW 903


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/657 (15%), Positives = 185/657 (28%), Gaps = 137/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A     V   D ++        L Q+LR ET     H +     +     G ++   
Sbjct: 346 LAIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLSG-RGFELNGV 403

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T++ A          +            K    + L  +                +
Sbjct: 404 A-HDTAIAAYLLRPGQRTYDL-----------KDVYQRHLQRQLSGDETQGQLSLLDAPD 451

Query: 152 HVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +         +   E T++L          D E  L L+   +   G  +D++ + + 
Sbjct: 452 SEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQ 511

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            ++  +  ++ +     +      +      L++ LF   G+     ++    T    + 
Sbjct: 512 LKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIE 571

Query: 267 HSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                      D +L    +       L  L +AV SDGR+  T     AS TGR S   
Sbjct: 572 ALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTE 629

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +RS  +   G   L+ AD + 
Sbjct: 630 PNLQNIP------------------------VRTQDGRRIRSAFVVGEGYETLLTADYSQ 665

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RV+A ++ +   I+A+  GED++    ++ F  P+D+V+ E R   K M        
Sbjct: 666 IEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYG----- 720

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL                                     +  +     
Sbjct: 721 ---------LVYGLS------------------------------AFGLGQQLNIPAGEA 741

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + +  ++  +  GV Q   ++ E                              D      
Sbjct: 742 KQIMTSYFERFGGVKQYLDNVVEQARK--------------------------DGFTSTL 775

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----K 619
             RR    ++  D      A     R            +Q  + DI+   M        K
Sbjct: 776 FGRRRYLPELGSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDQELKK 826

Query: 620 NG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            G    ++L VHDE+V E        V  +    M    S    +PL+        +
Sbjct: 827 AGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVSAGSGPNW 881


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 88/696 (12%), Positives = 178/696 (25%), Gaps = 156/696 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54
           + + ID ET S              +A I   + ++ +          +         + 
Sbjct: 351 NYVAIDTETTSLN----------VHEAQIIGISVSFKEFESYYIPIETKEKKTIEKAYII 400

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
               ++        +  N  F+  + KK     IP   +  T + A         SL   
Sbjct: 401 QKFNEFF-KAQPKLIGQNYKFDYKILKKHEFNVIPP--YFDTMIAAYVIDPNTKVSLDFL 457

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +                                ++   Y   D + T 
Sbjct: 458 AEKYLMHKNIRYEEIV------------------AQNGTLKDIPLEMVSNYAAEDADITF 499

Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
            LFK                  E     +   + + G  +D D + +    + +E K ++
Sbjct: 500 RLFKIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIE 559

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNITQLAKDLIL 279
            +I+K       +   T  L   LF    +        + T   +L        +   ++
Sbjct: 560 NEIIKSIGIEF-NLNSTKQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLI 618

Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                +       + L E V+    ++         + TGR S      QN+P       
Sbjct: 619 QYRQIAKLKNTYTDNLIEFVNEKTNKIHTNFIQTK-TATGRISSTSPNLQNIP------- 670

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                    +R       G   + AD + IE  +LA ++ ++  
Sbjct: 671 -----------------IKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESL 713

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF N +DI++ T ++ F    +KV+   R I K +   + Y               L 
Sbjct: 714 IEAFKNKKDIHIKTASQLFKVDEEKVTSSMRRIAKSINFGIIY-----RMSAFRLSKELS 768

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           +++        S F  + + ++      D   +    + L+           R   + + 
Sbjct: 769 IKREEAQKFIDSYFNLYSKIKTFIQNQIDFVRKNGYSETLLKR---------RRYIKEIN 819

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                   G   +        +                          ++    V  +  
Sbjct: 820 SQNYSERSGAERIAINSTIQGSASDI---------------------MKIAMIKVYNELK 858

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638
             N  +                             +                E++ E+P+
Sbjct: 859 SKNLKSKI---------------------------LLQVHD-----------EMLIESPE 880

Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                V  +    M         +PLK      K +
Sbjct: 881 QECEEVNKIIKTMMENAYP--LKIPLKVNIETGKSW 914


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/681 (14%), Positives = 192/681 (28%), Gaps = 169/681 (24%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LF 80
             A I   A A +     L          +D   L +L DET        +F+     + 
Sbjct: 328 HHAPIVGIALANERGRFFL----RPETALADPKFLAWLGDETKKKT----MFDSKRAAVA 379

Query: 81  KKTLGIDIPSKRWI---------------CTSVLARTNGLPSSLKNACLALNFSEH-LTK 124
            K  GI++    +                   V A                 +      +
Sbjct: 380 LKWKGIELRGVVFDLLLAAYLLDPAQAAGD--VAA-----------VAKMHQYEAVRSDE 426

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              GK            + P + T A H+          +  +       ++   L++ E
Sbjct: 427 AVYGKGAKR--------TVPDEPTLAEHLARKAAAIWALEEPLMDELRRNEQDRLLTELE 478

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
           + L  +   +   G ++D   + ++   + ++ + ++  I +L      +      L   
Sbjct: 479 QPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEF-NINSPKQLGTV 537

Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           LF    + ++  ++    T   +L          + IL+           +  L + V  
Sbjct: 538 LFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHP 597

Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
             G++         ++TGR S      QN+P                             
Sbjct: 598 VTGKVHTMFNQA-LTQTGRLSSVEPNLQNIP------------------------IRLEE 632

Query: 361 SDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +R   +       +  AD + IE RVLA IA +D  I+AF  G DI+  T    F+ 
Sbjct: 633 GRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHV 692

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             + V+   R   K +                    G+     +QN              
Sbjct: 693 SEEDVTANMRRQAKAVNF--------------GIVYGISDYGLAQN-------------- 724

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +         + + A   GV Q   ++ +          +  
Sbjct: 725 ----------------LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYV--TTL 766

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
             R   +P +  R                       + + +NT                 
Sbjct: 767 LHRRRYLPDITSRNFN---------------VRSFAERTAMNT----------------- 794

Query: 600 NIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
             +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L   +M 
Sbjct: 795 -PIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVME 853

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
           +    A  +PLK + +    +
Sbjct: 854 QAV--ALRVPLKVDYHYGPTW 872


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/665 (14%), Positives = 180/665 (27%), Gaps = 153/665 (23%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----- 82
           A     A     E     D       P  L + L D  V     N  F+    K+     
Sbjct: 338 ADFAGFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-FD---LKRTTYGL 388

Query: 83  -TLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135
             LGI      +    + +       +  +           +    L     GK   A+ 
Sbjct: 389 YRLGIKAEGLSF-DLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDL--EVYGKGKNAKI 445

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                    +   +   + A +       +D E        L      E     +   + 
Sbjct: 446 PADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKME 498

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G ++    + +L+   A   K+L+E I K       +      L + LF   G+ ++ 
Sbjct: 499 MNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIK 557

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311
            ++    T   +L+           IL     S      +  L + +   DGR+      
Sbjct: 558 KTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQ 617

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370
              + TGR S      QN+P                                +R   +  
Sbjct: 618 T-LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPS 652

Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
             +G  +   D + IE RVLA ++ +    +AF  G DI+  T  K F+   +D+V+  Q
Sbjct: 653 SPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQ 711

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               LD                              
Sbjct: 712 RRRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------ 736

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    +     +     +  ++ G+        +           +          
Sbjct: 737 ---------ISRKQAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIMH--------- 778

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    D+      + +      R          + +Q  + D
Sbjct: 779 -----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAAD 812

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
           I+   M N  K          +V+ VHDE++ + P     ++  +  S+M         +
Sbjct: 813 IMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDV 870

Query: 662 PLKAE 666
           PL A+
Sbjct: 871 PLVAD 875


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/657 (13%), Positives = 191/657 (29%), Gaps = 156/657 (23%)

Query: 38  DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           ++E + + +               + +   DE +  ++H+     ++ +K    DI +K 
Sbjct: 356 NEEKIYVVNINKIKNENYDKYLELIKKLFEDENIKKISHDIKNIYVILRKY---DIDAKN 412

Query: 93  W-ICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDC 147
           +   T + A       S       +   +         EE K       K          
Sbjct: 413 FSFDTKIAAYLLQPSKS-DYILRDIILEKLSINIHESDEESKIKETYCIKEI-------- 463

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                         Y K   E      + L    + E  L  +  ++   G++ID D + 
Sbjct: 464 --------------YEKLQKEIKSANMEELF--YNVELPLVKVLASMECEGFKIDKDRLT 507

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++ E    + + L+++I +  D    + +    L   LF    + ++  ++    T   +
Sbjct: 508 EIGEKFKVKIETLEKEIHEFADEDF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEV 566

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L     +      I+     +      +  L   +  DG++  +      + TGR S   
Sbjct: 567 LEKLKDSHPIISKIIEYRQITKLDSTYVEGLKHVIDEDGKIHSSFNQTV-TTTGRLSSTE 625

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R   + +     +  AD + 
Sbjct: 626 PNLQNIP------------------------IKYEMGREIRKVFVPNNEESVIFSADYSQ 661

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA IA ++  I AF + +DI+  T ++ F   ID+V+   R+  K +   +    
Sbjct: 662 IELRVLAHIANDEKLIDAFKHHKDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIV--- 718

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   +    +     
Sbjct: 719 -----------YGIG------------------------------AFSLSKDINVSRKEA 737

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + +++  V +   ++             ++ +R     +               
Sbjct: 738 KEYIDTYFSRYPNVKKYIDEIISKAEQDGFVTTIMNRKRYIPEVQS-------------- 783

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
              R       G+   +NT                   +Q  + D++   M +  +    
Sbjct: 784 ---RNKIVRSFGERLAMNT------------------PIQGSAADVIKLAMVHVYEELIK 822

Query: 624 ------IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++          V   +   M    +    +PL+A+      +
Sbjct: 823 RNLKSTLILQVHDELILNVYKDELEEVKQMVVDKMEGVMNLL--VPLEADVNVGTTW 877


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/657 (15%), Positives = 185/657 (28%), Gaps = 137/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A     V   D ++        L Q+LR ET     H +     +     G ++   
Sbjct: 346 LAIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLSG-RGFELNGV 403

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T++ A          +            K    + L  +                +
Sbjct: 404 A-HDTAIAAYLLRPGQRTYDL-----------KDVYQRHLQRQLSGDETQGQLSLLDAPD 451

Query: 152 HVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +         +   E T++L          D E  L L+   +   G  +D++ + + 
Sbjct: 452 SEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQ 511

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            ++  +  ++ +     +      +      L++ LF   G+     ++    T    + 
Sbjct: 512 LKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIE 571

Query: 267 HSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                      D +L    +       L  L +AV SDGR+  T     AS TGR S   
Sbjct: 572 ALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTE 629

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +RS  +   G   L+ AD + 
Sbjct: 630 PNLQNIP------------------------VRTQDGRRIRSAFVVGEGYETLLTADYSQ 665

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RV+A ++ +   I+A+  GED++    ++ F  P+D+V+ E R   K M        
Sbjct: 666 IEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYG----- 720

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL                                     +  +     
Sbjct: 721 ---------LVYGLS------------------------------AFGLGQQLNIPAGEA 741

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + +  ++  +  GV Q   ++ E                              D      
Sbjct: 742 KQIMTSYFERFGGVKQYLDNVVEQARK--------------------------DGFTSTL 775

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----K 619
             RR    ++  D      A     R            +Q  + DI+   M        K
Sbjct: 776 FGRRRYLPELGSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDQELKK 826

Query: 620 NG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            G    ++L VHDE+V E        V  +    M    S    +PL+        +
Sbjct: 827 AGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVSAGSGPNW 881


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 153/665 (23%)

Query: 28  AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81
           A     +    D  V +        +      L   L D+ V     N  F+     +  
Sbjct: 339 ADFVGFSLKMGDN-VYVSNDVSLLTKQP----LQTLLEDQAVNK---NV-FDLKRTIVGL 389

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135
             LGI   +  +    + +      ++  +           +    +     GK   A  
Sbjct: 390 HRLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDV--DIYGKGKKA-- 444

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                D   +    A  V A +            T      L      E  +  +   + 
Sbjct: 445 --AIPDEEIFFNHLAGKVLAIEALKP--TLLKRLTEHEQDDLYETI--EMPVANVLAKME 498

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G + D   +++L     Q   +L+ DI  L  G   +      L   LF    +  + 
Sbjct: 499 ITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPIK 557

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T   +L            +L+    +      +  L + +  DGR+    Q  
Sbjct: 558 KTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYQQT 617

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370
             + TGR S      QN+P                                +R   I   
Sbjct: 618 -LTATGRLSSVDPNLQNIP------------------------VRLEEGKKIRKAFIPSN 652

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
            +G      D + +E RVLA ++G++   +AF  G DI+  T  K F+    D+V+   R
Sbjct: 653 KDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMR 711

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   +                G+     S+N                        
Sbjct: 712 RHAKAVNFGIV--------------YGISDYGLSKN------------------------ 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +     +  ++  +                    +           
Sbjct: 734 ------LGISRKQAKEFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMH---------- 777

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      + +      R          + +Q  + DI
Sbjct: 778 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGGAADI 812

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M N  K          +++ VHDE++ + P     ++  +   +M         +P
Sbjct: 813 IKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--LDVP 870

Query: 663 LKAEG 667
           L A+ 
Sbjct: 871 LVADS 875


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/658 (16%), Positives = 194/658 (29%), Gaps = 130/658 (19%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGI 86
            I   A  +D     + D  +    P +L+ +L ++    + +++   +   +    L I
Sbjct: 332 DILKFAL-YDGSNHVVIDADKVHDYP-ELIAWLENDKTEKIVYDAKKSY---IVAHRLDI 386

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            I         + +       ++ +    +++ +        K  I  F KG     P D
Sbjct: 387 AIKHI-VFDVMLASYIIDPSRTIDDVNSVVSYFDQHY----VKESIEVFGKGKKRHVPED 441

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               +HV          K  +EA  E + +   L D E  L  +   + + G       +
Sbjct: 442 EILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVATDL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++++ I  +   L  +I     G   +      L + LF    + ++  ++    T   
Sbjct: 502 QEMEKEIQAKLDVLINNIYNAA-GESFNINSPKQLGVVLFETLELPVIKKTKTGYSTAVD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          D IL     S      +  L + +S D R+        A +TGR S  
Sbjct: 561 VLEQLQGQHPIIDYILEYRTLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-QTGRLSSV 619

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R    +  +   +  AD +
Sbjct: 620 DPNLQNIP------------------------IRLEEGRRIRKAFKSSDDNNVIFSADYS 655

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I  ++   +AF N EDI+  T  K FN   D+V    R   K +       
Sbjct: 656 QIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNF----- 710

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQ+                                +    
Sbjct: 711 ---------GIVYGISDYGLSQS------------------------------LGITRKQ 731

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +     GV Q  +D+ +           +  RR            +       
Sbjct: 732 AKQFIDDYLDSFPGVKQYMEDIVKDCKAQGYVETLLHRRRYIPDITSRNFNLRG------ 785

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
                        + + +NT                   +Q  + DI+   M N      
Sbjct: 786 -----------FAERTAMNT------------------PIQGSAADIIKLAMVNFVNEVK 816

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E P     +    +  +M      A  +PLK E    K +
Sbjct: 817 HTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA--LALDVPLKVETSHGKTW 872


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/657 (15%), Positives = 184/657 (28%), Gaps = 136/657 (20%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWD----RTEQSAMPSDLLQYLRDETVMCVAHNS 73
           ++G     EQ  +   A A D+E V         TE   +    LQ L+ E  M    + 
Sbjct: 321 EIGFSLLTEQGELFGLALAPDEEHVYFIKKEGFLTEGY-LTEKCLQLLQ-EGRMAYTIDL 378

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHL-TKMEEGK 129
             +    +   GI     +    ++ A            ++                 GK
Sbjct: 379 KEQLAFLR--AGIS-DRAKIADAAIGAYLLNPLKGQYPCEDIAKDYASLMIKGRAELFGK 435

Query: 130 ALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           A +A+  +    +   Y C  A   +A                   + L    D E  L 
Sbjct: 436 APLAKVMEEQPEELAQYACYLAYTAKAAMPVILQK-------LRENQMLELFRDMEMPLV 488

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
                + + G R++   +    E +     +L+++I +       +      L + LF  
Sbjct: 489 YTLYDMQEVGIRVNAQELKAYGEELYVRIVELEQEIYRDAGEEF-NINSPKQLGVILFEK 547

Query: 249 TGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             +     ++    T   +L            IL     +       + L+  +++DGR+
Sbjct: 548 LKLPGAKKTKSGFSTAADVLEKLAPDYAIVAKILEYRQLAKLKSTYADGLAGFIAADGRI 607

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            GT      + TGR S      QN+P                                +R
Sbjct: 608 HGTFNQT-ITATGRISSTDPNLQNIP------------------------VRTELGRLLR 642

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IA  G  L+ AD + IE RVLA ++G++  I AF +  DI+  T ++ F+ P D+V+
Sbjct: 643 KVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVT 702

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
             QR   K +   + Y               L +            F+ + + +      
Sbjct: 703 PLQRRNAKAVNFGIVYG-----ISAFGLSEDLHISVKEAGEYIDKYFQTYPKVKDFLDNA 757

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
             +  E    + L      +           +                            
Sbjct: 758 VKEAKEKGYAETLFHRRRPV---------PELKSGNFMQRS------------------- 789

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                                        G+   +N+                       
Sbjct: 790 ----------------------------FGERVAMNSPIQG------------------T 803

Query: 606 SRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
           + DI+   M    +          ++L +HDE++ E   +   +V   L   M    
Sbjct: 804 AADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEMVNAV 860


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/652 (13%), Positives = 170/652 (26%), Gaps = 148/652 (22%)

Query: 32  LCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             + ++ +              +   +   +  E +  +      +           I  
Sbjct: 336 GISISFKEGEGYFIASFDFNDEVKGKVKDIISFENIKKIGAYIQRDLHFL----DCKIKG 391

Query: 91  KRWICTSVLARTNGL---PSSLKNAC-LALNFSE-HLTKMEEGKALIARFCKGSIDSPPY 145
           +     S+ +          SL       LN +     K                     
Sbjct: 392 E-VFDVSLASYLLNPERQNHSLDILIREYLNRTSFIPQKY-------------------- 430

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
               A ++   +   E   +  E    LF         E  L  +  ++   G ++D + 
Sbjct: 431 ----AAYLFPLKTILEERIKKEELEFVLFNI-------ETPLIPVLYSMEKWGIKVDKEY 479

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  L +   +  KKL+E+I +L      +      L   LF    +      +    T  
Sbjct: 480 LKSLSDEFCERIKKLEEEIYELAGMKF-NLNSPKQLSEVLFERLKLPSGKKGKTGYSTSS 538

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
            +L +          IL            ++ +   ++S  GR+       G + TGR S
Sbjct: 539 LVLQNLLNAHPIVIKILQYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTG-TATGRIS 597

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA +G   V  D 
Sbjct: 598 SSEPNLQNIP------------------------IKSEEGRKIRRAFIADDGYYFVSLDY 633

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++ E   I AF  GEDI+  T A+ F  P D+V    R+  K +   + Y
Sbjct: 634 SQIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDDLLRSRAKAVNFGIIY 693

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                   +        +          S F+ + + +        +  E      L G 
Sbjct: 694 G-----ISSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDKTIYEAREKLYVKTLFGR 748

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +           +  + K +   +  +                              
Sbjct: 749 KRYI---------PEIRSINKQVRNAYERIAINAPIQGTAADII---------------- 783

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                +L   ++  +    N                                        
Sbjct: 784 -----KLAMIEIYKEIEEKN--------------------------------------LK 800

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672
             I+L +HDE++ E P+        +    M K       +PL  E    K 
Sbjct: 801 SRILLQIHDELILEVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 850


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/681 (14%), Positives = 192/681 (28%), Gaps = 169/681 (24%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LF 80
             A I   A A +     L          +D   L +L DET        +F+     + 
Sbjct: 328 HHAPIVGIALANERGRFFL----RPETALADPKFLAWLGDETKKKT----MFDSKRAAVA 379

Query: 81  KKTLGIDIPSKRWI---------------CTSVLARTNGLPSSLKNACLALNFSEH-LTK 124
            K  GI++    +                   V A                 +      +
Sbjct: 380 LKWKGIELRGVVFDLLLAAYLLDPAQAAGD--VAA-----------VAKMHQYEAVRSDE 426

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              GK            + P + T A H+          +  +       ++   L++ E
Sbjct: 427 AVYGKGAKR--------TVPDEPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLLTELE 478

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
           + L  +   +   G ++D   + ++   + ++ + ++  I +L      +      L   
Sbjct: 479 QPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEF-NINSPKQLGTV 537

Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           LF    + ++  ++    T   +L          + IL+           +  L + V  
Sbjct: 538 LFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHP 597

Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
             G++         ++TGR S      QN+P                             
Sbjct: 598 VTGKVHTMFNQA-LTQTGRLSSVEPNLQNIP------------------------IRLEE 632

Query: 361 SDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +R   +       +  AD + IE RVLA IA +D  I+AF  G DI+  T    F+ 
Sbjct: 633 GRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHV 692

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             + V+   R   K +                    G+     +QN              
Sbjct: 693 SEEDVTANMRRQAKAVNF--------------GIVYGISDYGLAQN-------------- 724

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +         + + A   GV Q   ++ +          +  
Sbjct: 725 ----------------LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYV--TTL 766

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
             R   +P +  R                       + + +NT                 
Sbjct: 767 LHRRRYLPDITSRNFN---------------VRSFAERTAMNT----------------- 794

Query: 600 NIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
             +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L   +M 
Sbjct: 795 -PIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVME 853

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
           +  +    +PLK + +    +
Sbjct: 854 QAVT--LRVPLKVDYHYGPTW 872


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKKVMEQAVS--LHVPLITDSSWGKTW 877


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 154/706 (21%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51
             + IDI+  S  P+          QA I   A A             +            
Sbjct: 418  HVAIDIKATSIDPM----------QADICGIALALTPNKACYIPLGHKKSGGGEDLFASG 467

Query: 52   ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                          L + +  E V+    +  F  ++  +     I  +      +++  
Sbjct: 468  LAEGQIEAAKAFDVLRKLMESEAVLKSGLDIKFISVMLAQH---KITLRTTDDVQLMSYA 524

Query: 103  NGLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQ-A 155
                     +++     L  +        G  +  ++        +  Y    A+ +   
Sbjct: 525  LDAGRGAHDIESLAQKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGAETADIIIRL 584

Query: 156  WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            W L     +   E    +++ L      ER L  +   +  RG  ID  ++ +L    AQ
Sbjct: 585  WLLMK--ARLISERMNNVYESL------ERPLIGVLARMERRGIMIDRQVLSRLSGDFAQ 636

Query: 216  ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT 271
               +L+++I K+  G   +      L   +F   G+     ++     T  SIL      
Sbjct: 637  TASRLEDEIRKIA-GEDINPGSPKQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAEE 695

Query: 272  -QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              +    IL+    S       + L   V+   +   T     A+ TGR S      QN+
Sbjct: 696  GHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALAATTTGRLSSNEPNLQNI 755

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            P                                +R   IA  G KLV AD + IE R+LA
Sbjct: 756  P------------------------VRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLA 791

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             IA      +AF +  DI+  T ++ F  P+  +  E R   K +   + Y         
Sbjct: 792  EIADIPVLKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYG-----ISA 846

Query: 451  MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                  L + +          FE +    ++    +D   E    + L G  C       
Sbjct: 847  FGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCH------ 900

Query: 511  RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
               +  +      L                     + R ++R         L        
Sbjct: 901  ---YPDIKASNASLRAFNERAAINARLQGTAADI-IRRAMIRMEDALAEKKL-------- 948

Query: 571  SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                               +       +                
Sbjct: 949  -----------------------------------AA----RMLLQVHDE---------- 959

Query: 631  EIVSETPDTPY-FSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673
             +V E PD+    ++  +  +M     P+    +PL  +   A  +
Sbjct: 960  -LVFEVPDSEVGDTIPVIQEVMENAAFPAARLSVPLHVDARAAHNW 1004


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/697 (12%), Positives = 178/697 (25%), Gaps = 158/697 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54
           S + ID ET S              +A I   + ++ +          +         + 
Sbjct: 337 SYVSIDTETTSTN----------VYEAQILGISVSFKEFESYYIPIETKEKKSIEREYIT 386

Query: 55  SDLLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111
               ++   +T    +  N  F+  +F +     IP   +  T + A         SL  
Sbjct: 387 QKFNEFF--KTKPKLIGQNYKFDYKIFTRHGFNAIPP--YFDTMIAAYVIDPNTKVSLDF 442

Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L       +    +    +                      +    Y   D + T
Sbjct: 443 LSEKYLMHKNIKYQEIVSQNGTLKD------------------IPLETVSNYAAEDADIT 484

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             LFK                  E     +   + + G  +D D + +  + + +E K +
Sbjct: 485 FRLFKIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLI 544

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFL--ITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           + +I++       +   +  L   LF      +        T   +L        +   I
Sbjct: 545 ENEIIQSIGIKF-NLNSSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKI 603

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +     S       + L + ++    ++        A  TGR        QN+P      
Sbjct: 604 IQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKA-ATGRILSTAPNLQNIP------ 656

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R       G   + AD + IE  +LA  + +  
Sbjct: 657 ------------------IKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGA 698

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF N EDI++ T ++ F    DKV+   R + K +   + Y   A           L
Sbjct: 699 LIEAFKNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQE-----L 753

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +++        S F  + + +       D   +    + L+           R   + +
Sbjct: 754 SIKREEAQKFIDSYFNLYSKIKIFIQNRIDFARKNGYSETLLKR---------RRYIKEI 804

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                    G   +        +                          ++    V  + 
Sbjct: 805 NSQNHSERSGAERIAINSTIQGSASDI---------------------MKIAMVRVYNEF 843

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
              N  +                             +                EI+ E+P
Sbjct: 844 KSKNLKSKI---------------------------LLQVHD-----------EILIESP 865

Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   T +  +M         LPL+      K +
Sbjct: 866 KQECEEAKTIIKEMMENAYP--LKLPLRINIETGKSW 900


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 134/658 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
              AW ++        E+         +L+DE      +++    +   +        K 
Sbjct: 337 VGVAWGNQEKIYVSNREELFESPAFTDWLKDEKRKKFVYDAKRTYVALNRY---TTAPKG 393

Query: 93  W-ICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDC 147
                 + A       +  +         +      +   GK           D   +  
Sbjct: 394 IAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPADEEDFFAHLA 453

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +   +          K   E   +    L    + E  L ++   +   G ++D   + 
Sbjct: 454 RKVAAITNLT-----PKLTEELAAKNQTALFE--EMELPLSMILAEMEITGIKVDASRLH 506

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++   AQ   +++E I     G   +      L + LF   G+ ++  ++    T   +
Sbjct: 507 QMKGEFAQRLHEIEEKIYAEA-GETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDV 565

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          + IL     +      +  L + +  DG++         ++TGR S   
Sbjct: 566 LEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQTGRLSSVD 624

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383
              QN+P                                +R   +       +  +D + 
Sbjct: 625 PNLQNIP------------------------IRLEEGRKIREAFVPRETDWVIYSSDYSQ 660

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442
           IE RVLA I+ +    +AF  G+DI+ +T  + F     + V+   R   K +       
Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN                                +   A
Sbjct: 716 ---------GIVYGISDYGLSQN------------------------------LGITRKA 736

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  K+ GV    +D+                                      
Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYH----------------------- 773

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
              RR    D+      + T      R            +Q  + DIL   M +      
Sbjct: 774 ---RRRYLPDINSRNFNIRTFA---ERTAI------NTPIQGSAADILKIAMIDLAKRLK 821

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             K    ++L VHDE+V E P++    +  L   +M +    A  +PL  +    K +
Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/672 (14%), Positives = 182/672 (27%), Gaps = 152/672 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----T 83
           A     A     E     D       P  L   L D  V     N  F+    K+     
Sbjct: 341 ADFAGFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-FD---LKRTTYGL 391

Query: 84  LGIDIPSKRW-ICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136
             + I ++       + +       +  +           +    L     GK   A+  
Sbjct: 392 YRLGIKAESLTFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDL--EVYGKGKNAKIP 449

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                   +   +   + A +       +D E        L      E     +   +  
Sbjct: 450 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKMEM 502

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G ++    + +L+   A   K+L+E I K       +      L + LF   G+ ++  
Sbjct: 503 NGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIKK 561

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
           ++    T   +L+           IL     S      +  L + +   DGR+       
Sbjct: 562 TKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDKRDGRIHTRYLQT 621

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370
             + TGR S      QN+P                                +R   +   
Sbjct: 622 -LTATGRLSSVDPNLQNIP------------------------ARTEEGKQIRKAFVPSS 656

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
            +G  +   D + IE RVLA ++ +    +AF  G DI+  T  K F+   +D+V+  QR
Sbjct: 657 PDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQR 715

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               LD                               
Sbjct: 716 RRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------- 739

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +     +  ++ G+        +           +           
Sbjct: 740 --------ISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMH---------- 781

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      + +      R          + +Q  + DI
Sbjct: 782 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADI 816

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M N  K          +V+ VHDE++ + P     ++  +  S+M         +P
Sbjct: 817 MKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVP 874

Query: 663 LKAE-GYEAKRY 673
           L A+ G+    Y
Sbjct: 875 LVADAGWGHDWY 886


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/650 (13%), Positives = 178/650 (27%), Gaps = 141/650 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSK 91
            A     E V      E   +     + L ++  +     S ++               +
Sbjct: 344 LALCLGGEKVF---LLEGPEVLKSFFRLLEEKGGLV----STYDAKSCLHALEPYGFKPE 396

Query: 92  RW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                  + A      ++ +   +A   +                     + P       
Sbjct: 397 MIGFDVLLAAYLVNPAANNELGAIAFEHA-------------GFMLSPGAELPEKAQ--- 440

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                  ++        +   +  + L      E  L  +   +   G ++  + +  L 
Sbjct: 441 ------AIYQLTPILKSKIKLQEQEYLY--YSVELPLAAVLADMEKVGVKVSEERLRSLS 492

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
           + + ++  +L E+I KL  G   +      L   LF   G+  V  ++    T  S+L  
Sbjct: 493 KELGEQLAQLSEEIYKLA-GERFNLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEK 551

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
               ++   +++ R   +       + L E +    GRL  T    G + TGR +     
Sbjct: 552 LAEHEIVAKVLVYRQ-LAKLKSTYTDALPELIDPATGRLHTTFLQAG-TATGRLASAEPN 609

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            QN+P                                +R   +A      L+ AD + IE
Sbjct: 610 LQNIP------------------------VRDSLGRRIRQAFVAEGPDYVLLSADYSQIE 645

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA ++ +    +AF  GEDI+  T A+ F     +V+ E RA  KV+   + Y    
Sbjct: 646 LRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMS- 704

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      L ++    +      F  + + +     +  Q  E      ++      
Sbjct: 705 ----DYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILNR---- 756

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                R     +L   ++  +    +        +                         
Sbjct: 757 -----RRYIPEILSSNRNQRQLGERLAINTTIQGSAADLI-------------------- 791

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
            +    D+                             Q          M           
Sbjct: 792 -KKAMVDIHRQLKG-----------------------QG-----FKCRMI---------- 812

Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
           L VHDE++ E P      V  +    M +   +   +P+KA       ++
Sbjct: 813 LQVHDELLFEVPKEELEKVAPIIKSTMEQALPF--KVPIKANLKVGPNWQ 860


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/658 (15%), Positives = 206/658 (31%), Gaps = 132/658 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGID 87
           I    + +D     + D  +    P +L+++L +ET   + +++   +   +    L ID
Sbjct: 333 ILKFGF-YDGVDHVVIDSDQLKEYP-ELIKWLENETTEKIVYDAKKTY---VVAHRLDID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           I +       + +       ++ +   +  N++++  + +     I+ + KG     P D
Sbjct: 388 IKNI-VFDVMLASYIIDPSRTIDDVNSVVSNYNQNFVQDD-----ISIYGKGKKRHVPED 441

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                H+ +       CKR++ A  E  +++  L + E  L  +   + + G   D++ +
Sbjct: 442 TILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDINDL 501

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++Q  I  +   L  +I +       +      L + LF    + ++  ++    T   
Sbjct: 502 RQMQSEIQGKLDLLISNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKTGYSTAVD 560

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          D IL     S      +  L + +S D R+        A +TGR S  
Sbjct: 561 VLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISKDNRIHTRFNQTLA-QTGRLSSV 619

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R      SN   ++ AD +
Sbjct: 620 DPNLQNIP------------------------VRLEEGRKIRKAFKPTSNDSVILSADYS 655

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA I  ++   +AF N +D++  T  K F+   ++V+   R   K +       
Sbjct: 656 QIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAKAVNF----- 710

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQ+                                +    
Sbjct: 711 ---------GIVYGISDYGLSQS------------------------------LNITRKK 731

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     + A   GV Q   D+ +           +  RR            +       
Sbjct: 732 AKAFIDDYLASFPGVKQYMSDIVKDAKADGYVETLLHRRRYIPDINSRNFNLRG------ 785

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
                        + + +NT                   +Q  + DI+   M    +   
Sbjct: 786 -----------FAERTAMNT------------------PIQGSAADIIKLAMVEFDRQIK 816

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E P          +  +M         +PLK +      +
Sbjct: 817 QTSYHAQLLLQVHDELIFEVPANEVEDFSLFVEEIMEHALQ--LDVPLKVDSNYGSTW 872


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/635 (14%), Positives = 180/635 (28%), Gaps = 136/635 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC 113
           +++ L    +     N+  E I+    LG+ I +  +    +++       +   L    
Sbjct: 391 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDF-DFLLVSYLLDTTDNDNQLATLA 448

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW---QLFGEYCKRDVEAT 170
              N          G  +  +  + +     +   +A+ +       +      +  E  
Sbjct: 449 NRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDHQQAELY 508

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R++          E  L  +  ++   G ++D   + KL +   Q   +L++ I +    
Sbjct: 509 RQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQ 558

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF+   I  +  ++    T  ++L           LIL     +  
Sbjct: 559 EF-NINSPKQLADLLFVHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 617

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L E V+ D     T      ++TGR S      QN+P                
Sbjct: 618 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP---------------- 661

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   +    G ++  +D + IE RVLA + G++   KAF +GE
Sbjct: 662 --------DRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGE 713

Query: 407 DIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           DI+  T    F    D+  + +QR   K +                    G+     +Q 
Sbjct: 714 DIHAATARSIFGLSTDQKITFDQRRRAKAVN--------------FGIVYGISDFGLAQR 759

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                           +     + + + +  +   V      + 
Sbjct: 760 ------------------------------LGISRIEGKEIIQTYFHEFPKVKNWIDSII 789

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RR    D+      L +   
Sbjct: 790 ALAHKQGYVETIAQ--------------------------RRRYLPDIHSKNFNLRSFA- 822

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639
              R  T         +Q  + DI+   M    +          ++L VHDE++ E P  
Sbjct: 823 --ERTAT------NTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQ 874

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +  L   +M         +PL+ E +    +
Sbjct: 875 EIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/665 (13%), Positives = 180/665 (27%), Gaps = 135/665 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL 84
            +   A +  ++     D T               L D  +    H+   F  I++    
Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNF--IVYLNNR 398

Query: 85  GIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSI 140
           GID     +  T + A          ++       LN S    +   GK       K   
Sbjct: 399 GIDFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLFKDMQ 457

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTI 194
                              G Y     + +R++   L          D E  L      +
Sbjct: 458 PDVLSK-----------TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADM 506

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G+++++D +++  + + ++   + ++I  L      +      L + LF   G+ ++
Sbjct: 507 EYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPII 565

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
             ++    T   +L   +      + IL               L   ++   G++  +  
Sbjct: 566 KKTKTGYSTDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN 625

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                             S  +R   I 
Sbjct: 626 QTV-TATGRISSTEPNLQNIP------------------------IKLEMSRKIRKVFIP 660

Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
                 L+ AD + IE RVLA I  ++  I AF N EDI+ +T A  F  P ++V+   R
Sbjct: 661 SDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMR 720

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K +   + Y  G       +    L + +           + +   + +   + ++ 
Sbjct: 721 SRAKAVNFGIVYGIG-----DFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEG 775

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            E      +            R     +     ++      V        +         
Sbjct: 776 KEKGFVTTMFMR---------RRYLPELKSRNFNIRSFGERVAMNTPIQGSAADII---- 822

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            ++    V G+                   KL   ++       
Sbjct: 823 -----------------KIAMVKVHGELKKR---------------KLKSRLI------- 843

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668
                                 ++ ET       V  +    M    S    +PL  E  
Sbjct: 844 -----LQVHDE-----------LIVETFKDEKEEVEKILLEGMQNAVS--LKVPLVVEIK 885

Query: 669 EAKRY 673
               +
Sbjct: 886 SGSNW 890


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/652 (14%), Positives = 178/652 (27%), Gaps = 136/652 (20%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSA--MPSDLLQYLR-DETVMCVAHNSLFERILFKKTLGID 87
                AW+D  V +          +   L   LR +     + H++    + F       
Sbjct: 353 VAVGLAWEDG-VAVLGTAGIEPAALAGTLEPLLRVNP----IFHDAKRALVWFSNAGAGV 407

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T V        +S  +    L        + EG            DSP    
Sbjct: 408 ADPGG--DTMVAGYLLNPSASRHDLPE-LCLEHLNLALVEG------------DSPQLAA 452

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            R   V          K  V     L++R+      E  L  +   +   G  ++++ + 
Sbjct: 453 ARRAAVIRLLHRELASKLQVAGMENLYRRV------ELPLTRVLGAMESYGVAVNMETLD 506

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
            +   +      L E I +L      +      L + LF   G+  V  ++    T  ++
Sbjct: 507 LMGIELEGGLAALTEAIYELAGEEF-NLNSPKQLAVILFEKLGLPPVKRTKTGFSTDAAV 565

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
           L            ++     +      ++ L   V+   G L  +      + TGR S  
Sbjct: 566 LEELACRHPIAAKLVEYRQLAKLKSTYVDGLKPLVNPRTGSLHTSFNQTV-TATGRLSSS 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P                                +R   +    G+ L+ AD +
Sbjct: 625 EPNLQNIP------------------------VRLELGRRLRKAFVPHGPGRLLLAADYS 660

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA I+G++  I AF  GEDI+  T A+ F  P+ +V+   R   K +   + Y 
Sbjct: 661 QIELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVYG 720

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L + +   +      F  +   +++   +  +  +      L+G  
Sbjct: 721 -----ISDYGLSRDLGISRSEAHDYIERYFRRYRGVKAYLEEIVARARQEGYVTTLLGR- 774

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +    +++                                      
Sbjct: 775 --------RRYLPDLFSSNRNVRSFGERTAMNTPIQGTAADII----------------- 809

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
               ++    +         A                                       
Sbjct: 810 ----KMAMVKIFRLLEAQYPAAR------------------------------------- 828

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ + PD    +V  L    M         +PL+ +      +
Sbjct: 829 -MILQVHDELIFDVPDDDLPAVAGLVKDTMEHTLE--LQVPLQVDLKAGPNW 877


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/662 (13%), Positives = 184/662 (27%), Gaps = 141/662 (21%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLGI 86
           L  +A           T    +  +  +   L  +T+     N  F+     +     GI
Sbjct: 340 LVGFAIGQGNKWYV--TNDPELLHNQHVSDLLTSKTIKK---NL-FDAKRTYVGLYRQGI 393

Query: 87  DIPSKRWICTSVL-ARTNGLPSSLKNACLA------LNFSEHLTKMEEGKALIARFC--K 137
           ++ +  +    +L +      ++  +           N      +   GK          
Sbjct: 394 ELANVDFD--MLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTD--EEVYGKGAKRHIDPQS 449

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
            +  +      +A       +F +    D     +L+       D E  +  +   +   
Sbjct: 450 PAFLAHLVHKVKAIDALHDGMFKD---LDAHNQSKLYW------DIEIKIAFVLAHMEIN 500

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D   +  +     +   ++++ I +       +      L   LF    + ++  +
Sbjct: 501 GIKVDAATLEGMGSKFKERLAEIEQTIFQEAGEEF-NIGSPKQLGKILFEKLRLPILKKT 559

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            +L+    S      ++ L + +  D     T      
Sbjct: 560 KTGYSTSVDVLEKLAPDAPIVQNVLDYRQISKLQSTYVDGLLKVIHPDDSKVHTRYLQTL 619

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNG 373
           ++TGR S      QN+P                                +R   I    G
Sbjct: 620 TQTGRLSSVDPNLQNIP------------------------VRSEEGRLIRQAFIPSHPG 655

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIG 432
            ++  +D + IE RVLA I  +     AF NGEDI+ TT  + F  P  ++V+ E R   
Sbjct: 656 WQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQA 715

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y                 + +   +      FE++   + +   + +     
Sbjct: 716 KAVNFGIVYG-----ISDFGLASNTGITRKQAHQFIERYFEEYPGVKKYTEDIVEFARNH 770

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
              + +            R     +     +L                            
Sbjct: 771 RYVETIAHR---------RRYLPDINSKSFNLRSFAER---------------------- 799

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                                    + +NT   Q          +          D +  
Sbjct: 800 -------------------------TAMNTPI-QGSAADIIKIAMINM------ADAIK- 826

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                      ++L VHDE++ E PD    +V  L  S+M         +PLK E +  K
Sbjct: 827 ------DMKTRMLLQVHDELIFEVPDEELDTVKQLIPSVMDSAIH--LNVPLKVESHWGK 878

Query: 672 RY 673
            +
Sbjct: 879 TW 880


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/712 (12%), Positives = 177/712 (24%), Gaps = 174/712 (24%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------------------EQSAM- 53
              GV    E   +     A ++E +                                + 
Sbjct: 253 KTAGVSLVTENGRVFGAGLALNEEEIYYIPVEGMITEGYLCGKLEGLLHKVSESNTENIM 312

Query: 54  ---PSDLLQYLRDE--TVMCVAHN----SLFERIL--------FKKTLGIDIPSKRWICT 96
                D+ +   +E   V     N      +++            K +  D         
Sbjct: 313 KSNTDDVKKDPENEISDV-----NTDGTLKYDKKCVCALDVKALLKHIKSD-DPMAVFDA 366

Query: 97  SVLARTNGL---PSSLKNACLALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            V A          +  +              +   GK  + +                 
Sbjct: 367 GVAAYLLNPLKSSYTYDDMAKEYLNGRILPAREELLGKKTVEK-AWEESAEGLAAWACYM 425

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              A       C+   +            +  E  L     ++   G  +  + +    E
Sbjct: 426 AYTALACRKPMCEALRDTGMWNV-----YTQIELPLIFTLDSMEKWGISVKSEELKSYGE 480

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268
            ++    +L++ I +       +      + + LF   G+     ++    T   IL   
Sbjct: 481 KLSVRIGELEKQIWQQAGEEF-NINSPKQMGVILFEKLGLKGGKKTKTGYSTAADILEKL 539

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                    IL     +       + L   ++ DGR+  T      + TGR S      Q
Sbjct: 540 APEYPIVKDILEYRQLAKLKSTYADGLVGEIAEDGRIHSTFNQT-ITATGRISSTEPNLQ 598

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   +   G   + AD + IE RV
Sbjct: 599 NIP------------------------VRMELGRLIRKVFVPEEGYVFLDADYSQIELRV 634

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++G++  I+A+   +DI+  T ++ F+ P D+V+  QR   K +   + Y       
Sbjct: 635 LAHMSGDEKLIQAYKEAQDIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVYG-----I 689

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            +      L + +          FE + + +     + ++  E      + G    +   
Sbjct: 690 SSFGLSQDLSITRKEAAEYIERYFETYPKIKGFLDGLVEEGKEKGYVTTMFGRRRPI--- 746

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                   +                                                   
Sbjct: 747 ------PELKSGNFMQRS------------------------------------------ 758

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                 G+   +N+             K+  N                  +         
Sbjct: 759 -----FGERVAMNSPIQG---TAADIIKIAMN---------------RVYRRLKDENLKS 795

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +VL VHDE++ ET       V  +    M         + L+ + ++   +
Sbjct: 796 RLVLQVHDELLIETCKEEIPQVSAILEEEMKGAAK--LSVELEVDMHQGNNW 845


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 188/659 (28%), Gaps = 137/659 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I   A  ++D         +      +   ++ D+ +    ++         K  G++I 
Sbjct: 330 IVGFAV-YNDSEAYFIGTEDALNCT-NFKNFISDKKIEKYGYDIKKSINA-AKWHGLEIE 386

Query: 90  SKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLT-KMEEGKALIARFCKGSIDSPP 144
                   + +       SLK+     C    + +    +   GK    +          
Sbjct: 387 -NYVFDLQLASYILNP--SLKDEIRSVCEYYEYYDVFYDEEVYGKGAKKK--VPETSRVA 441

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               +              K + E   EL+K      D E  +  +   +  +G ++D  
Sbjct: 442 EHLIKQAKAIYILKDQAIEKLNNENQFELYK------DVEMPVAKILARMEFQGAKVDSV 495

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
           ++ +L+E   +E   L+++I  L +    +      L   LF   G+     ++    T 
Sbjct: 496 VLKQLEEQFGREINILEKEIHTLANREF-NIASPKQLGEVLFEDLGLPNGKKTKTGYSTS 554

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             IL+         D +L     S      +  L + V  DG++         ++TGR S
Sbjct: 555 VDILNKLKDIHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGKIHTIYNQA-LTQTGRLS 613

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   +      LV  D 
Sbjct: 614 STDPNLQNIP------------------------VKTPEGKLIRKAFVPEYDY-LVSFDY 648

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA +AG    IKAF   +DI+  T ++ F  P ++V    R   K +      
Sbjct: 649 SQIELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNF---- 704

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     ++ V                               +   
Sbjct: 705 ----------GIIYGMSDFGLAEQV------------------------------GVSVG 724

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 K +   +  +        +           ++ +R                   
Sbjct: 725 EAREFIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKR------------------- 765

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
                   +     + +Y+     + +           + +Q  + DI+   M    +  
Sbjct: 766 --------FIREINEKNYMRQEFGKRL--------AMNSPIQGSAADIIKVAMIKVDELL 809

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ +        V  + +  MT        + LKAEG  A  +
Sbjct: 810 KKHQLKSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTAIK--MDVELKAEGSYAVNW 866


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/609 (14%), Positives = 161/609 (26%), Gaps = 147/609 (24%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+         +LA      ++  +                        
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---KRLIPLSDGERDLWLLD 191
                               A        +      + L    K L    + E+ L  + 
Sbjct: 400 ----------------WTEDAAHRALLSERLHRNLLKRLQGEEKLLWLYHEVEKPLSRVL 443

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-- 249
             +   G R+D+  +  L   +A+E ++L+E++ +L      +      L   LF     
Sbjct: 444 AHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRL 502

Query: 250 ---GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRL 305
              G         T  ++L          + IL     +      ++ L   V  + GRL
Sbjct: 503 PALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPNTGRL 562

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                   A+ TGR S      QN+P                                +R
Sbjct: 563 HTRFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIR 597

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V 
Sbjct: 598 RAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVD 657

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              R   K +   + Y   A           L +            F+ + +  +     
Sbjct: 658 PLMRRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKT 712

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
            ++  +    + L G          R     +    K + E    +              
Sbjct: 713 LEEGRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL- 762

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                                +L    +      +                         
Sbjct: 763 --------------------MKLAMVKLFPRLREMG------------------------ 778

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664
                             ++L VHDE++ E P      V  L    M K    A  +PL+
Sbjct: 779 ----------------ARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA--VPLE 820

Query: 665 AEGYEAKRY 673
            E    + +
Sbjct: 821 VEVGMGEDW 829


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 134/658 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
              AW ++        E+         +L+DE      +++    +   +        K 
Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKG 393

Query: 93  W-ICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDC 147
                 + A       +  +         +      +   GK           D   +  
Sbjct: 394 IAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPADEEDFFAHLA 453

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +   +          K   E   +    L    + E  L ++   +   G ++D   + 
Sbjct: 454 RKVAAITNLT-----PKLTEELAAKNQTALFE--EMELPLSMILADMEITGIKVDASRLH 506

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++   AQ   +++E I     G   +      L + LF   G+ ++  ++    T   +
Sbjct: 507 QMKGEFAQRLHEIEEKIYAEA-GETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDV 565

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          + IL     +      +  L + +  DG++         ++TGR S   
Sbjct: 566 LEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQTGRLSSVD 624

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383
              QN+P                                +R   +       +  +D + 
Sbjct: 625 PNLQNIP------------------------IRLEEGRKIREAFVPREADWVIYSSDYSQ 660

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442
           IE RVLA I+ +    +AF  G+DI+ +T  + F     + V+   R   K +       
Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN                                +   A
Sbjct: 716 ---------GIVYGISDYGLSQN------------------------------LGITRKA 736

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  K+ GV    +D+                                      
Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYH----------------------- 773

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
              RR    D+      + T      R            +Q  + DIL   M +      
Sbjct: 774 ---RRRYLPDINSRNFNIRTFA---ERTAI------NTPIQGSAADILKIAMIDLVKRLK 821

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             K    ++L VHDE+V E P++    +  L   +M +    A  +PL  +    K +
Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/665 (14%), Positives = 190/665 (28%), Gaps = 146/665 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGID 87
           I        +  V + +  E     SDL+ +L +       +++   +   +    L ID
Sbjct: 333 ILKFGLYTGEHHV-VINADEIKQF-SDLVNWLENPNTAKTVYDAKKTY---VVAHRLDID 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSID---- 141
           I + ++    + +       ++ +    ++                  +      +    
Sbjct: 388 IQNIQF-DVMLSSYIIDPSRTIDDVNSVVSLYGQHYVQDNVAIYGKGKKHHIPEDEILNK 446

Query: 142 --SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
             +   +   A+  +      EY +  + A  EL             L  +   + + G 
Sbjct: 447 HVASIIEAVSASKSEMQNQLKEYNQESLLADLEL------------PLAEILSEMEEIGI 494

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258
             D++ +  +++ I ++   L ++I +       +      L + LF    + ++  ++ 
Sbjct: 495 YTDVNDLQHMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKT 553

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L          D IL     S      +  L + +S D R+        A +
Sbjct: 554 GYSTAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-Q 612

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375
           TGR S      QN+P                                +R      S    
Sbjct: 613 TGRLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSTDSV 648

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + IE RVLA I  ++   +AF NG DI+  T  K F+   D+V    R   K +
Sbjct: 649 ILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGADEVDSLMRRQAKAV 708

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+     SQ+                              
Sbjct: 709 NF--------------GIVYGISDYGLSQS------------------------------ 724

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +     GV Q   D+ +      Q+       R   +P +  R   
Sbjct: 725 LGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAK--AQDFVETLLHRRRYIPDITSRNFN 782

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                               + + +NT                   +Q  + DI+   M 
Sbjct: 783 L---------------RSFAERTAMNT------------------PIQGSAADIIKLAMV 809

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
              K          ++L VHDE++ E P     S       +M         +PLK E  
Sbjct: 810 QFNKEVQHTKYHAKLLLQVHDELIFEVPKDEVESFSQFVEDIMESALE--LDVPLKVESS 867

Query: 669 EAKRY 673
               +
Sbjct: 868 YGATW 872


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 134/658 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
              AW ++        E+         +L+DE      +++    +   +        K 
Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKG 393

Query: 93  W-ICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDC 147
                 + A       +  +         +      +   GK           D   +  
Sbjct: 394 IAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPADEEDFFAHLA 453

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +   +          K   E   +    L    + E  L ++   +   G ++D   + 
Sbjct: 454 RKVAAITNLT-----PKLTEELAAKNQTALFE--EMELPLSMILADMEITGIKVDASRLH 506

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++   AQ   +++E I     G   +      L + LF   G+ ++  ++    T   +
Sbjct: 507 QMKGEFAQRLHEIEEKIYAEA-GETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDV 565

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          + IL     +      +  L + +  DG++         ++TGR S   
Sbjct: 566 LEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQTGRLSSVD 624

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383
              QN+P                                +R   +       +  +D + 
Sbjct: 625 PNLQNIP------------------------IRLEEGRKIREAFVPREADWVIYSSDYSQ 660

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442
           IE RVLA I+ +    +AF  G+DI+ +T  + F     + V+   R   K +       
Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQN                                +   A
Sbjct: 716 ---------GIVYGISDYGLSQN------------------------------LGITRKA 736

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  K+ GV    +D+                                      
Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYH----------------------- 773

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
              RR    D+      + T      R            +Q  + DIL   M +      
Sbjct: 774 ---RRRYLPDINSRNFNIRTFA---ERTAI------NTPIQGSAADILKIAMIDLAKRLK 821

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             K    ++L VHDE+V E P++    +  L   +M +    A  +PL  +    K +
Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/672 (14%), Positives = 182/672 (27%), Gaps = 152/672 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----T 83
           A     A     E     D       P  L   L D  V     N  F+    K+     
Sbjct: 339 ADFAGFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-FD---LKRTTYGL 389

Query: 84  LGIDIPSKRW-ICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136
             + I ++       + +       +  +           +    L     GK   A+  
Sbjct: 390 YRLGIKAESLSFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDL--EVYGKGKNAKIP 447

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                   +   +   + A +       +D E        L      E     +   +  
Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKMEM 500

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G ++    + +L+   A   K+L+E I K       +      L + LF   G+ ++  
Sbjct: 501 NGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIKK 559

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
           ++    T   +L+           IL     S      +  L + +   DGR+       
Sbjct: 560 TKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQT 619

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370
             + TGR S      QN+P                                +R   +   
Sbjct: 620 -LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSS 654

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
            +G  +   D + IE RVLA ++ +    +AF  G DI+  T  K F+   +D+V+  QR
Sbjct: 655 PDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQR 713

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               LD                               
Sbjct: 714 RRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------- 737

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +     +  ++ G+        +           +           
Sbjct: 738 --------ISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMH---------- 779

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      + +      R          + +Q  + DI
Sbjct: 780 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADI 814

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M N  K          +V+ VHDE++ + P     ++  +  S+M         +P
Sbjct: 815 MKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVP 872

Query: 663 LKAE-GYEAKRY 673
           L A+ G+    Y
Sbjct: 873 LVADAGWGHDWY 884


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/481 (15%), Positives = 146/481 (30%), Gaps = 85/481 (17%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                    +    A +  G Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287
            +      L + L+   G+ ++  +      T +++L+           +++   + S  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                + L E ++   GR+  +     A  TGR S      QN+P               
Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A  G KL+ AD + IE R++A +A ++  + AF N  
Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T A+ F   ++ V+ + R   K +   L Y               + + +     
Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMS-----AFGLAKQIGVDRKQSQA 779

Query: 467 K 467
            
Sbjct: 780 Y 780


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +       + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKEAGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/675 (15%), Positives = 186/675 (27%), Gaps = 128/675 (18%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPSD----LLQYLRDET 65
           L   G    A  A +T  A +                 +E     ++    L   L D+ 
Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVLAEFIGSASEGQMFATEGHSGLAALLGDKK 395

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHL 122
           +   AHN+ +   L     G ++    +  T + A   G   +L                
Sbjct: 396 MSKTAHNAKYLMNLLLSA-GQEVKGLDF-DTMIAAHLLGEK-NLAIKDLVFEHFGIEIAD 452

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +            +    +   +   +   Q    +    K    A     + +   + 
Sbjct: 453 IE--------NILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFAR 504

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G  +D DL+  + E   ++  KL+EDI     G   +      L 
Sbjct: 505 VEMPLLPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQA-GHSFNIGSPQQLG 563

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + ++  ++    T   +L          DLIL            L+TL   V
Sbjct: 564 RILFDELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYRMLVKLKSTYLDTLPRMV 623

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           +   R   T      + TGR S      QN+P                          G 
Sbjct: 624 NPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP------------------------VRGE 659

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   IA  G  L+  D + I+ RVLA ++ +   I+AF + +DI+  T A+  N 
Sbjct: 660 MGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNV 719

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              KV+KEQR + K +   + Y        +       +L     +    + FE + +  
Sbjct: 720 SPSKVTKEQRRLAKTVNFGVIYGMS-----SYGLEQATELSLEEADKFIKAYFEKYPRVA 774

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +   ++ Q       + L+G          R     +    + L E    +        
Sbjct: 775 VYFAEIKQQARTQGYVETLLGR---------RRYIPEINSPNRILRESAERMAINMPVQG 825

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                      +L    +          +               
Sbjct: 826 TSADII---------------------KLAMVRLDEKIKEEKLKSRL------------- 851

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWA 658
                         +                 ++ E P      +   L   M+     A
Sbjct: 852 --------------LLQVHDE-----------LIFEVPTAELGRMSDLLIETMSGAV--A 884

Query: 659 KGLPLKAEGYEAKRY 673
             +PLK E      +
Sbjct: 885 FEIPLKVELKSGANW 899


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQA-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/586 (14%), Positives = 156/586 (26%), Gaps = 125/586 (21%)

Query: 90  SKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                   V A             +     L  +         K      C    D+   
Sbjct: 389 GDTVYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKTDLIKKMSYKDACAKEQDNF-- 446

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
             TR   + A+  F            E  + L      E  L      + D G  +  + 
Sbjct: 447 --TRMAGLMAYTAFAAGKPLSERLAAEGMEDLYRNI--ELPLIYTLFHMEDEGIAVRREE 502

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +      + ++   L+++I ++T     +      L   LF    I     ++    T  
Sbjct: 503 LTAYGGKLKKQIAVLEKEIWEMTGQEF-NINSPKQLGEILFEKMQIKGGKKTKTGYSTAA 561

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL+    +       + L   +  DGR+         + TGR S 
Sbjct: 562 DVLEKLAPDYPVIQKILDYRQYTKLNSTYADGLGTYIKEDGRIHSRFNQT-ITATGRISS 620

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   +  NG   + AD +
Sbjct: 621 TEPNLQNIP------------------------IRMELGREIRKVFVPRNGFLFLDADYS 656

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++G++  I+A+   +DI+  T ++ F+ P+++V+  QR   K +   + Y 
Sbjct: 657 QIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQRRNAKAVNFGIVYG 716

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L + +          FE + Q +S    +     E      + G  
Sbjct: 717 -----ISAFGLSEDLSISRKEAMEYIERYFETYPQVKSFLDSLVAHAKEQGYVTTMFGRR 771

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             +           +                                             
Sbjct: 772 RPV---------PELKSSNFMQRS------------------------------------ 786

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
                       G+   +N+                       + DI+   M    +   
Sbjct: 787 -----------FGERVAMNSPIQG------------------TAADIIKIAMIRVDERLR 817

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661
                  ++L VHDE++ ET +    +V  +    M    S    L
Sbjct: 818 RENLRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAASLKVEL 863


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/689 (13%), Positives = 193/689 (28%), Gaps = 141/689 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSD 56
            +  D ET S   +           A +   ++A+++                + +    
Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378

Query: 57  LLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN-A 112
               +        V  N  ++  + K    I++    +  T +L+          L    
Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLNTNEKVGLDYQI 436

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATR 171
               +           K       +   +             A      + K+ ++   +
Sbjct: 437 DKYFDHKMISFTDVVKKG------ENFSNVDIERACEYAAEDALMTLRLFKKQLEIFKEK 490

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E  + L    + E D   +   +   G ++D++L+ + +EL  +   +L   I + +   
Sbjct: 491 EEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGVE 550

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF   G+     ++    T +++L+          L+L    +    
Sbjct: 551 F-NINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYREAYKLQ 609

Query: 289 ILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
              +  L E  S   D R+  +    G + TGR S      QN+P +  S          
Sbjct: 610 STYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDSTIQ------- 661

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   I  +G KLV  D + IE R+LA  + +   ++AF N  
Sbjct: 662 -----------------IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDL 704

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T  K F    ++ +KE+R I K +   L Y  G+K          L +       
Sbjct: 705 DIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGET-----LGIPSKEAKQ 756

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              S FE ++  + +   ++D          L+                       +   
Sbjct: 757 YIDSYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRL---------------FDFNSAN 801

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                     +++                      L          +     Y     ++
Sbjct: 802 AMMKAAYLREAVNT---------------------LFQGSAADLIKLAMINIYQKYKDNE 840

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG- 645
                                  +   +                 +V E  D     +  
Sbjct: 841 N----------------------IKL-LLQIHDE-----------LVFEVKDEFVEEITF 866

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           ++ ++M     +   +PLK        ++
Sbjct: 867 SIKNIMENI--YKLNVPLKVSLSVGSSWK 893


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 99/672 (14%), Positives = 182/672 (27%), Gaps = 152/672 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----T 83
           A     A     E     D       P  L   L D  V     N  F+    K+     
Sbjct: 339 ADFAGFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-FD---LKRTTYGL 389

Query: 84  LGIDIPSKRW-ICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136
             + I ++       + +       +  +           +    L     GK   A+  
Sbjct: 390 YRLGIKAESLTFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDL--EVYGKGKNAKIP 447

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                   +   +   + A +       +D E        L      E     +   +  
Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKMEM 500

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G ++    + +L+   A   K+L+E I K       +      L + LF   G+ ++  
Sbjct: 501 NGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIKK 559

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
           ++    T   +L+           IL     S      +  L + +   DGR+       
Sbjct: 560 TKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQT 619

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370
             + TGR S      QN+P                                +R   +   
Sbjct: 620 -LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSS 654

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
            +G  +   D + IE RVLA ++ +    +AF  G DI+  T  K F+   +D+V+  QR
Sbjct: 655 PDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQR 713

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               LD                               
Sbjct: 714 RRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------- 737

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +     +  ++ G+        +           +           
Sbjct: 738 --------ISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMH---------- 779

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      + +      R          + +Q  + DI
Sbjct: 780 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADI 814

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M N  K          +V+ VHDE++ + P     ++  +  S+M         +P
Sbjct: 815 MKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVP 872

Query: 663 LKAE-GYEAKRY 673
           L A+ G+    Y
Sbjct: 873 LVADAGWGHDWY 884


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/637 (14%), Positives = 172/637 (27%), Gaps = 137/637 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKN 111
                ++ D     V +++     +  K LG+D+         + +       L   + N
Sbjct: 367 QAFKNWIEDPHAKKVLYDAK-RSQVILKGLGMDLEGVS-DDVLIASYLIHARDLSGDVAN 424

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD---CTRANHVQAWQLFGEYCKRDVE 168
                N         E      +       +  YD      +       +  +  + D  
Sbjct: 425 VAREFNLDYLAY-DSEVYGKGKKVAVPEDKTRLYDHLVAKVSVINDLLPIIKDRLEADEM 483

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                          E  L  +   +   G  +D   ++ L +   ++  +L E+I +  
Sbjct: 484 VEL--------YRKIELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQLQEEIYREA 535

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284
                +   T  L   LF   G+     ++     T +S L          DLIL     
Sbjct: 536 GVEF-NINSTQQLSKVLFEDMGLKGGKKTKSGNYSTAQSELEKLQG-VPIIDLILAYRQL 593

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      +  + + +  DG++         + TGR S      QN+P             
Sbjct: 594 AKLQSTYVQGILDYIHQDGKVHSRFIQT-LTTTGRLSSADPNLQNIP------------- 639

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +       +  +D + IE RVLA ++G+    +AF 
Sbjct: 640 -----------IRTEEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDPHLQEAFK 688

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             +DI+  T AK F+     +SK++R   K +                    G+     S
Sbjct: 689 ENKDIHTATAAKVFHKDEKDISKDERRQAKAVN--------------FGIVYGISDYGLS 734

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
           QN+                               +     +     +   +  V +    
Sbjct: 735 QNLS------------------------------ISRQEAKAFIDKYFEIYPKVAEYMDK 764

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
             E            +                          RR    D+K         
Sbjct: 765 SVEIAREAGYAKTLFN--------------------------RRRYLPDLKAKN---YNV 795

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
            S   R          + +Q  + DI+   M    +         +++L VHDE++ E  
Sbjct: 796 RSFAERTAM------NSPIQGTAADIIKVAMVEMDQALKEHQLQANLLLQVHDELIFEVA 849

Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 +  L   +M    S    +PL  +      +
Sbjct: 850 KEDLEDLAALVKDVMENAVS--LDVPLIVDSNYGSTW 884


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A        K   E   +  + L      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A        K   E   +  + L      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 93/689 (13%), Positives = 193/689 (28%), Gaps = 141/689 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSD 56
            +  D ET S   +           A +   ++A+++                + +    
Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378

Query: 57  LLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN-A 112
               +        V  N  ++  + K    I++    +  T +L+          L    
Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLNTNEKVGLDYQI 436

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATR 171
               +           K       +   +             A      + K+ ++   +
Sbjct: 437 DKYFDHKMISFTDVVKKG------ENFSNVDIERACEYAAEDALMTLRLFKKQLEIFKEK 490

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E  + L    + E D   +   +   G ++D++L+ + +EL  +   +L   I + +   
Sbjct: 491 EEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGAE 550

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF   G+     ++    T +++L+          L+L    +    
Sbjct: 551 F-NINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYREAYKLQ 609

Query: 289 ILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
              +  L E  S   D R+  +    G + TGR S      QN+P +  S          
Sbjct: 610 STYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDSNIQ------- 661

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   I  +G KLV  D + IE R+LA  + +   ++AF N  
Sbjct: 662 -----------------IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDL 704

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T  K F    ++ +KE+R I K +   L Y  G+K          L +       
Sbjct: 705 DIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGET-----LGIPSKEAKQ 756

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              S FE ++  + +   ++D          L+                       +   
Sbjct: 757 YIDSYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRL---------------FDFNSAN 801

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                     +++                      L          +     Y     ++
Sbjct: 802 AMMKAAYLREAVNT---------------------LFQGSAADLIKLAMINIYQKYKDNE 840

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG- 645
                                  +   +                 +V E  D     +  
Sbjct: 841 N----------------------IKL-LLQIHDE-----------LVFEVKDEFVEEITF 866

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           ++ ++M     +   +PLK        ++
Sbjct: 867 SIKNIMENI--YKLNVPLKVSLSVGSSWK 893


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/606 (15%), Positives = 163/606 (26%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+         +LA      ++  +                        
Sbjct: 357 DLAVLALREGLDLAPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  K L    + E+ L  +   +
Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249
              G R+D+  +  L   +A+E ++L+E++ +L      +      L   LF        
Sbjct: 447 EATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
           G         T  ++L          + IL     +      ++ L   V    GRL   
Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                         +R 
Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                M           L VHDE++ E P      V  L    M K    A  +PL+ E 
Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823

Query: 668 YEAKRY 673
              + +
Sbjct: 824 GIGEDW 829


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/606 (15%), Positives = 164/606 (27%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+         +LA      ++  +                        
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  K L    + E+ L  +   +
Sbjct: 398 ----------GEWTEDAAHRALLSERLHQNLLKRLQGE-EKLLWLYHEVEKPLSRVLAHM 446

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249
              G R+D+  +  L   +A+E ++L+E++ +L      +      L   LF        
Sbjct: 447 EATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
           G         T  ++L          + IL     +      ++ L   V    GRL   
Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +     +      F+ + +  +      ++
Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LSIPYEEASAFIERYFQSFPKVRAWIEKTLEE 715

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                         +R 
Sbjct: 763 -----------------MKLAMVKLFPRLRQMG------------------------AR- 780

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                M           L VHDE++ E P      V  L    M K    A  +PL+ E 
Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEA 823

Query: 668 YEAKRY 673
              + +
Sbjct: 824 GIGEDW 829


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 131/354 (37%), Positives = 196/354 (55%), Gaps = 5/354 (1%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L+ D+ET    P+   G  AYAE   + L A+A  DEPV +WD T    +PS L + + 
Sbjct: 5   ILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIA 63

Query: 63  DETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           D   +   HNS F+R + +  +  +  P +RW  T V A  + LP +L   C  L   + 
Sbjct: 64  DPDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQD 123

Query: 122 LTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             K +EGK+LI  FCK    +S     T   H   WQ F  Y   D+EA RE++KRL   
Sbjct: 124 KAKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKW 183

Query: 181 SDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
           +    E  LW  DQ INDRG+ +D+DLV      + + +K+L E  V++T+G ++++ Q 
Sbjct: 184 NYQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQR 243

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            A+  ++    G++L DM + T++  ++  ++    K+L+  RL +S ++  K  TL ++
Sbjct: 244 DAMIKHIVESYGVELPDMQKSTIERRIADPDLPPAVKELLHIRLQASATSTSKYKTLLKS 303

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           VSSDGRLRGTLQF GASRTGRW+G +FQPQNL R+  S E +   I+ +     
Sbjct: 304 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKADCE 357


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/664 (13%), Positives = 181/664 (27%), Gaps = 139/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I   A   ++                +   +  D        ++    +  K   GI+
Sbjct: 331 ADIQGIAL-VNETGNYFIPTEVALQ-SEEFAAFASDHKRKKTVFDAKRAIVALKW-KGIE 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKGSID 141
           +    +    + +       +  +                  +   GK            
Sbjct: 388 LNGIDF-DFIIASYIVNPSETSTDLAEIARKKGYYQIETD--EAVYGKGAKR-------- 436

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           + P     A+H+       +  K       +  ++L    + E  L L+   +   G ++
Sbjct: 437 AVPDQQKVADHLVRKTFAMQEMKESFIHELKDNEQLELFEELEMPLTLVLGEMEALGIKV 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D   + ++   + ++ +K++E I  L      +      L + LF   G+  V  ++   
Sbjct: 497 DKARLEEMGTDLGEKLEKIEEKIFDLAGEKF-NINSPKQLGVILFEKLGLPPVKKTKTGY 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRT 317
            T   +L            IL+           +  L + +  D  ++         ++T
Sbjct: 556 STSADVLEKLAEKHEVIQQILHYRQLGKLKSTYIEGLLKVIHEDSNKIHTRFNQA-LTQT 614

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
           GR S      QN+P                                +R   I       +
Sbjct: 615 GRLSSIDPNLQNIP------------------------VRLEEGRKIREAFIPSHEDWVI 650

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
             AD + IE RVLA IA ++  I+AF    DI+  T    F+   D+V+   R   K + 
Sbjct: 651 FAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVN 710

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     SQ++                              
Sbjct: 711 F--------------GIVYGISDYGLSQSL------------------------------ 726

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +     GV +  +D             +    R   +P +       
Sbjct: 727 GITRKDAKTFIDRYLESFPGVKEYMEDSVLDAKDKGYV--TTLLHRRRYLPEITSSNFNL 784

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                              + + +NT                   +Q  + DI+ + M +
Sbjct: 785 ---------------RSFAERTAMNT------------------PIQGSAADIIKKAMID 811

Query: 617 A------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                        ++L VHDE+V E P      +  +   +M +       +PLK +   
Sbjct: 812 MANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQAVE--LKVPLKVDYSY 869

Query: 670 AKRY 673
              +
Sbjct: 870 GSTW 873


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 322 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 377

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 378 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 436

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A        K   E   +  + L      E  L ++   +   G ++D 
Sbjct: 437 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 489

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 490 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 548

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 549 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 607

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 608 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 643

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 644 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 703

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 704 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 758

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 759 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 805

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 806 -------------------------------------RLKETGLQAT------------- 815

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P+    S+  L   +M +  S    +PL  +    K +
Sbjct: 816 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 864


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 87/629 (13%), Positives = 189/629 (30%), Gaps = 122/629 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112
           +L   + +  ++    N   + ++FK+ LG+ +    +    + A      ++   L   
Sbjct: 372 ELRAVIENPAIIKNVFNVKAQLVMFKR-LGLALQGVDF-DFLLAAYLLDTTANDNELSTL 429

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +      +   GK       +       +   +A+ +   +        D      
Sbjct: 430 AQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLGQKADALMQLETPTLAALTD------ 483

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             +++   +D E  L  +   +  RG  I+   + ++   +    + +++ I  L  G  
Sbjct: 484 -HEQMHLYTDIELPLAHVLADMEYRGIAINQARLAEIGTDLTGRIQAIEDAIY-LEAGEK 541

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+ ++  ++    T   +L          D +L     +    
Sbjct: 542 FNINSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAHQAPIVDYVLQYRQLAKLKS 601

Query: 290 LKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L   V+  D ++         ++TGR S      QN+P                 
Sbjct: 602 TYVDGLLAVVNQKDSKIHTRFLQT-LTQTGRLSSVDPNLQNIP----------------- 643

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R+  + S    ++  AD + IE RVLA + G+    +AF NGED
Sbjct: 644 -------MRSDEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLNGED 696

Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           I+  T    F       V+  QR   K +   + Y               L + +     
Sbjct: 697 IHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYG-----ISDFGLANNLGISRAQAKQ 751

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + F+++ +       ++         + +            R     +     +L  
Sbjct: 752 FIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAKR---------RRYLPDIHAKNFNLRS 802

Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                 +      SA  +  +  + +                                  
Sbjct: 803 FAERTAMNSPIQGSAADIIKIAMIKV---------------------------------- 828

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                      L EN +QA                   ++L VHDE++ E P +   ++ 
Sbjct: 829 --------ADALAENNMQA------------------RMLLQVHDELIFEAPTSEIPALT 862

Query: 646 TLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            L   +M    +    +P++ E +  K +
Sbjct: 863 ALVTKVMDSAVT--LDVPMQVESHYGKTW 889


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 96/648 (14%), Positives = 180/648 (27%), Gaps = 149/648 (22%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICT 96
           D+       T    +  ++L+       + +    +++       L ++     K     
Sbjct: 335 DQESNTVFITSNKLLIEEILK----SDTVKI----MYDLKNIFHQLNLEDTNNIKNCEDV 386

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + +       S       L  S   T +E  K       K  +            ++  
Sbjct: 387 MIASYVLDSTRSSYEL-ETLFVSYLNTDIEAVKK-----DKKIVSVVLLKRLWDELLRLI 440

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                           L          ER L  +   +   G+++D D +++  + I  +
Sbjct: 441 D---------------LNSCQFLYESIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENK 485

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
             KL+  I ++  G   +      L   LF    + ++  ++    T   +L        
Sbjct: 486 ILKLETQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              LIL+    +         L +A++   GR+  T    G + TGR +      QN+P 
Sbjct: 545 IVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP- 602

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                          +R   +   G  L+ AD + IE R+LA I
Sbjct: 603 -----------------------VKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHI 639

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  I AF N  DI+  T A+ F   I  V+ E R+  K +   +             
Sbjct: 640 SEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIV------------ 687

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                   A   K+           +  
Sbjct: 688 --YGISDY------------------------------GLARDIKISRKEAAEFINKYFE 715

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++  V +   +  +                                 ++   +R+    D
Sbjct: 716 RYPKVKEYLDNTVKFARDNG--------------------------FVLTLFNRKRYIKD 749

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626
           +K     L        R          + +Q    DI+   M    +          I+L
Sbjct: 750 IKSTNRNLRGYA---ERIAM------NSPIQGSPADIMKLAMIKVYQKLKENNLKSKIIL 800

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P      V  +    M         +PL  E  E   +
Sbjct: 801 QVHDELLIEAPYEEKDIVKEIVKREMENAVR--LKVPLVVEVKEGLNW 846


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 92/656 (14%), Positives = 190/656 (28%), Gaps = 126/656 (19%)

Query: 30  ITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           I   A+  +D+ +   +      + P   + +L DET     +++    +   + +G  +
Sbjct: 337 IVGLAWG-NDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KM 392

Query: 89  PSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPP 144
               +    + A         + ++       +      +   GK       +       
Sbjct: 393 TGIAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFG 451

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           +   +   +Q         K D E T +    L      E  L  +   +   G R+D  
Sbjct: 452 HLARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDAT 504

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            + ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T 
Sbjct: 505 RLKEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTA 563

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L            IL     +      +  L + +  D ++         ++TGR S
Sbjct: 564 VDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLS 622

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380
                 QN+P                                +R   +       +  +D
Sbjct: 623 SVDPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSD 658

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   +
Sbjct: 659 YSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGI 718

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L + +        + FE +   + +   +     +    + L 
Sbjct: 719 VYG-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLY 773

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDV 558
                      R     +     +L        +      SA  +  +  + M       
Sbjct: 774 HR---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA------ 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RRL    +                             QA              
Sbjct: 819 -------RRLKEEKL-----------------------------QAT------------- 829

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 830 -----MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 96/654 (14%), Positives = 200/654 (30%), Gaps = 139/654 (21%)

Query: 35  YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85
           Y  D+EPV           T    +     +    + +        F+           G
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141
           IDI    +    ++           S++ +    + +     +   GK    +    S +
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               +      +   +L+ +  + + E    L++      D E  L  +   +   G  +
Sbjct: 443 KEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
             + ++++ EL   E K +++ + +L  G   +   +  L   LF    + ++  ++   
Sbjct: 497 KKETLVEMGELFEDEIKSIEKSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T + +L   +      D IL     +      ++ + + +  DG++  T Q   A +TG
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   + S G  L+ 
Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSEGNMLLD 650

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF +G DI+  T ++ F    DKV+  QR+  K +   
Sbjct: 651 ADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G                                                     +
Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +   ++G+ Q  +D+             ++                   
Sbjct: 727 TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMN------------------- 767

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    ++K     + +   ++              +Q  + DI+   M    
Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
                 K    ++L VHDE++ + P      V  +   +MT        + +  
Sbjct: 812 NRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 92/656 (14%), Positives = 190/656 (28%), Gaps = 126/656 (19%)

Query: 30  ITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           I   A+  +D+ +   +      + P   + +L DET     +++    +   + +G  +
Sbjct: 337 IVGLAWG-NDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KM 392

Query: 89  PSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPP 144
               +    + A         + ++       +      +   GK       +       
Sbjct: 393 TGIAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFG 451

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           +   +   +Q         K D E T +    L      E  L  +   +   G R+D  
Sbjct: 452 HLARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDAT 504

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            + ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T 
Sbjct: 505 RLKEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTA 563

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L            IL     +      +  L + +  D ++         ++TGR S
Sbjct: 564 VDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLS 622

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380
                 QN+P                                +R   +       +  +D
Sbjct: 623 SVDPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSD 658

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELAL 439
            + IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   +
Sbjct: 659 YSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGI 718

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L + +        + FE +   + +   +     +    + L 
Sbjct: 719 VYG-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLY 773

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDV 558
                      R     +     +L        +      SA  +  +  + M       
Sbjct: 774 HR---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA------ 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RRL    +                             QA              
Sbjct: 819 -------RRLKEEKL-----------------------------QAT------------- 829

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 830 -----MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 96/685 (14%), Positives = 192/685 (28%), Gaps = 127/685 (18%)

Query: 5   FIDIETRSP----QPLPKVGVWAYAEQAV-----ITLCAYAWDDEPVKLWDRTEQSAMPS 55
             D+ET       + L    +    E        I       DD    +    E     S
Sbjct: 314 TFDVETDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDD--THIVINAEDIKQHS 371

Query: 56  DLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           DL+++L D   +   +++   +   +    L I+I + ++    + +       ++ +  
Sbjct: 372 DLIEWLEDAQTVKTVYDAKKTY---VAAHRLDINIQNVQF-DVMLASYIIDPSRAIDDVK 427

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             ++           K  ++ + KG     P D     HV +        K  +E   + 
Sbjct: 428 SVVSLYGQNY----VKDNVSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLMEEQLKE 483

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           + ++  L+D E  L  +   + + G   D++ +  ++  I ++   L ++I +       
Sbjct: 484 YNQVELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGEEF- 542

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      L + LF    + ++  ++    T   +L          + IL     S     
Sbjct: 543 NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLKGEHPIIEHILEYRQLSKLQST 602

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + +S D R+        A +TGR S      QN+P                   
Sbjct: 603 YVEGLQKVISKDNRIHTRFNQTLA-QTGRLSSVDPNLQNIP------------------- 642

Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R      S    ++ AD + IE RVLA I  ++   +AF +G DI+
Sbjct: 643 -----IRLEEGRKIRKAFKPTSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIH 697

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T  K FN   + V    R   K +   + Y               L + +        
Sbjct: 698 TATAMKVFNVEANDVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFID 752

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                +   + +   +          + L+           R     +     +L     
Sbjct: 753 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHR---------RRYIPDITSRNFNLRSFAE 803

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                     +                          +L            N        
Sbjct: 804 RTAMNTPIQGSAADII---------------------KLAMVKFNEKVKNTNYHAK---- 838

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LC 648
                                             ++L VHDE++ E P +        + 
Sbjct: 839 ----------------------------------LLLQVHDELIFELPKSEVEDFSEFVE 864

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M         +PLK +      +
Sbjct: 865 EIMENALD--LDVPLKVDSSYGPTW 887


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%)

Query: 33  CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              AW +        +     + P   + +L DET     +++    +   + +G  +  
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394

Query: 91  KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146
             +    + A         + ++       +      +   GK       +       + 
Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   +Q         K D E T +    L      E  L  +   +   G R+D   +
Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T   
Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +      +  L + +  D ++         ++TGR S  
Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382
               QN+P                                +R   +       +  +D +
Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441
            IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   + Y
Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 720

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L + +        + FE +   + +   +     +    + L   
Sbjct: 721 G-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    R     +     +L        +      SA  +  +  + M         
Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 818

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RRL    +                             QA                
Sbjct: 819 -----RRLKEEKL-----------------------------QAT--------------- 829

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 830 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 87/641 (13%), Positives = 163/641 (25%), Gaps = 135/641 (21%)

Query: 40  EPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           E V               +   L    +    HN+ F   +     GI++       T +
Sbjct: 350 ERVYQLKLEAGDDYKLQWIKALLESAVIKKYLHNAKF-IQVLLLRHGIELRGVA-GDTML 407

Query: 99  LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           LA  +                         K  +                         +
Sbjct: 408 LAYVDDPAFEGDEL------------DACLKKHLQLNI----------AENNLAALVNTI 445

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              Y + + +   EL + L    + E  +  +   +   G +++   + ++ E +A    
Sbjct: 446 RELYFQLEGQIPAELRELLQ---EVEMPMSEVLARMEFCGVKVERSTLARISEELASGIA 502

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKSILSHSNITQLAK 275
             +E I +L  G   +      L   LF   G+           T   +L          
Sbjct: 503 GHEERIFELA-GSSFNINSPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEII 561

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             ILN    S       + L E +    GR+    +    + TGR S      QN+P   
Sbjct: 562 AHILNYRQLSKIKSTYADALQELIHPETGRVHTIFKQAQ-TATGRLSSVEPNLQNIP--- 617

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393
                                        +R   +A      ++ AD + I+ R LA I+
Sbjct: 618 ---------------------IRMEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHIS 656

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           G++  I+ F +G DI+  T  + F+ P++ V  E R   K +   + Y            
Sbjct: 657 GDERLIETFKSGVDIHTRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYG-----ISDFGL 711

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                + +        +    +   + +   + +        + L+           R  
Sbjct: 712 ARDTGVSRKEARKYIDNYLNSYPGVKKYMEDIVEFGRRHGYVETLLKR---------RRY 762

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +    K +      +                                   +L    V
Sbjct: 763 LPELNARNKMVQAFGRRMALNTPVQGTSADII---------------------KLAMIKV 801

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
             +                                               ++L VHDE++
Sbjct: 802 DEEIRKRR--------------------------------------LQARLLLQVHDELL 823

Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            E P T    V  L    M    S    +PL+        +
Sbjct: 824 LELPRTELEEVSGLLRDCMENACS--LKVPLEVSLKTGPNW 862


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/663 (13%), Positives = 174/663 (26%), Gaps = 147/663 (22%)

Query: 28  AVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             +TL   A W  +                +   L DET+  V +N+  +     K  G 
Sbjct: 338 PAVTLIGLAIWAGDEAVYIPHNVNGWEL--VWDLLADETIPKVTYNAK-DVCNACKAKGT 394

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++    +    + A      ++                                      
Sbjct: 395 ELRGLCF-DIQLAAYLLEPTAA------------------------KYPLTELACQHLGL 429

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIND 196
                  +      +Y     E  + L+  L              + E  L  +   +  
Sbjct: 430 AVGDMDKEHLGT-PDYAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEI 488

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G R+DL  +  L + I    + L  +I +L      +   T  L   LF +  + ++  
Sbjct: 489 AGIRVDLTQLDALAQEITDRIETLLTEIYQLAGQEF-NVNSTRQLGHILFEVLKLPVIKK 547

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFY 312
           ++    T   +L          D +L     +      L+ L + + +D GR+       
Sbjct: 548 TKTGYSTDAEVLEKLAGQHPLIDCLLEYRLLTKLKSTYLDGLRDLIRADTGRIHTHFNQT 607

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                                +R   +   
Sbjct: 608 V-TATGRLSSSEPNLQNIP------------------------IRTEIGRRIRELFVPGP 642

Query: 373 GKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           G   +  AD + IE RVLA ++G+D  I AF + +DI+  T A+ F  P+ +V+ + RA 
Sbjct: 643 GYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRAR 702

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +   + Y               + + +        S F  +   +++   + +   +
Sbjct: 703 AKAVNFGIVYG-----ISDFGLSRDIGVSRKEAGQYIDSYFAKYRGVKNYIDNVINLARQ 757

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 L G          R     +     +                         ++ 
Sbjct: 758 QGYVTTLFGR---------RRFLPDINSGNFNQRAFAERTAMNTPIQGTAADIIKKAMIT 808

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         R+L    +K                                     
Sbjct: 809 VY------------RQLRDRRLKSRL---------------------------------- 822

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670
             +                 +V E  +     V  L    M    + A  +PL A+    
Sbjct: 823 --LLQVHDE-----------LVLEVAEAERVLVAQLVKQAMEDAVTLA--VPLVADVKTG 867

Query: 671 KRY 673
             +
Sbjct: 868 ANW 870


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 183/663 (27%), Gaps = 168/663 (25%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-- 78
              Y   A I        D  + L D             +L D     +  +S  E    
Sbjct: 356 PELYFSSAEIL------ADNKIYLLDAQSG--CWDKFDSWLSDAGSKKITIDSK-ELYKC 406

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARF 135
              +   + +        ++         S   L++                        
Sbjct: 407 CLCR--KVKVQGI-VDDVALAGYVADPGHSSYSLEDLSRR-------------------- 443

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                + P    T   ++              +   +L++      + E  L  +   + 
Sbjct: 444 -----NLPGVLATPCENLLQLAS-KLRSLLAEQQQLKLYE------EFELPLAPVLAQME 491

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G   D +L+L+L E +     KL+    +       + +    L + LF    + ++ 
Sbjct: 492 FAGITPDKELLLQLNEDMGHRIAKLEALAQEQAGEEF-NLKSPKQLGVILFERLQLPVIK 550

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311
            ++    T   +L            IL     +      L  L   ++   GR+    Q 
Sbjct: 551 KTKTGYSTDAKVLEALEGKHPLIATILEHRKLAKLQSTYLEGLQPLINPKTGRIHTHFQQ 610

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P                             S  +R   +  
Sbjct: 611 TV-TVTGRLSSTDPNLQNIP------------------------ARTEESRQIRRIFVPG 645

Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G   L+  D + +E R+LA IA ++  ++AF +G+DI+  T A+ F  P+D+V+ + R+
Sbjct: 646 AGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRS 705

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   + Y               LD+                               
Sbjct: 706 RAKAVNFGIVYG-----ISDFGLAKQLDVG------------------------------ 730

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                             ++  ++ GV +  +D+                          
Sbjct: 731 ---------RKEAAGYIASYFERYTGVKKYMEDIVAEAREQGY----------------- 764

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                    +     RR    +++     L +      R            +Q  + DI+
Sbjct: 765 ---------VSTLMGRRRYLPEIRSSNFNLRSFA---ERTAI------NTPIQGTAADIM 806

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPL 663
            + M    +          I+L VHDE+V E  +     V  L    M    S    +PL
Sbjct: 807 KKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAAS--LDIPL 864

Query: 664 KAE 666
            A+
Sbjct: 865 LAD 867


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/628 (14%), Positives = 180/628 (28%), Gaps = 122/628 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113
            + +L DET     +++    +   + +G  +    +    + A         + ++   
Sbjct: 362 FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTGIAF-DVLLAAYLLDTNDNNADIEGVA 419

Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +      +   GK       +       +   +   +Q         K D E T +
Sbjct: 420 QHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT-----SKLDSELTEK 474

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
               L      E  L  +   +   G R+D   + ++Q   ++  K+++E I        
Sbjct: 475 NQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF 532

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+ ++  ++    T   +L            IL     +    
Sbjct: 533 -NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQS 591

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P                  
Sbjct: 592 TYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSVDPNLQNIP------------------ 632

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +       +  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 633 ------IRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           + +T  + F     + V+   R   K +   + Y               L + +      
Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNLGITRKQAQQY 741

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             + FE +   + +   +     +    + L            R     +     +L   
Sbjct: 742 IDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR---------RRYLSDINSRNFNLRSF 792

Query: 528 FAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                +      SA  +  +  + M              RRL    +             
Sbjct: 793 AERTAINTPIQGSAADILKIAMIEMA-------------RRLKEEKL------------- 826

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                           QA                   ++L VHDE+V E P++    +  
Sbjct: 827 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 852

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L   +M    S    +PL  +    K +
Sbjct: 853 LVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/635 (14%), Positives = 178/635 (28%), Gaps = 136/635 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC 113
           +++ L    +     N+  E I+    LG+ I +  +    +++       +   L    
Sbjct: 391 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDF-DFLLVSYLLDTTDNDNQLATLA 448

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW---QLFGEYCKRDVEAT 170
              N          G  +  +  + +     +   +A+ +       +      +  E  
Sbjct: 449 NRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDHQQAELY 508

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R++          E  L  +  ++   G ++D   + KL +   Q   +L++ I +    
Sbjct: 509 RQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQ 558

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF    I  +  ++    T  ++L           LIL     +  
Sbjct: 559 EF-NINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 617

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L E V+ D     T      ++TGR S      QN+P                
Sbjct: 618 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP---------------- 661

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   +    G ++  +D + IE RVLA + G++   KAF +GE
Sbjct: 662 --------DRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGE 713

Query: 407 DIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           DI+  T    F    D+  + +QR   K +                    G+     +Q 
Sbjct: 714 DIHAATARSIFGLSTDQKITFDQRRRAKAVN--------------FGIVYGISDFGLAQR 759

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                 + + + +  +   V      + 
Sbjct: 760 ------------------------------LGTSRIEGKEIIQTYFHEFPKVKNWIDSII 789

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RR    D+      L +   
Sbjct: 790 ALAHKQGYVETIAQ--------------------------RRRYLPDIHSKNFNLRSFA- 822

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639
              R  T         +Q  + DI+   M    +          ++L VHDE++ E P  
Sbjct: 823 --ERTAT------NTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQ 874

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +  L   +M         +PL+ E +    +
Sbjct: 875 EIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/673 (12%), Positives = 183/673 (27%), Gaps = 160/673 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83
            +   A+       +    ++   +       ++L +   + V     ++     +    
Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLENTA-LKV-----YDFKRSKVLLSR 386

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           LGI++    +      +R              L  +    ++     L  +      ++ 
Sbjct: 387 LGIELSRPAFD-----SR----------LAKYLLSTVDNNEIVTIAGLYGKTKLAEDEAV 431

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTI 194
                +    +   L     ++                   +L  L + E+ L  +   +
Sbjct: 432 YGKGAKRALPEKAILLSHLARKVTVLIETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G +++ + +  +Q    +   +L ++I  L      +      L   LF   G+   
Sbjct: 492 EIAGIKVERETLQTMQAENERILTRLTQEIYDLAGEEF-NINSPKQLGGILFEKLGLPTS 550

Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                     T   +L          + IL+    +      +  L + + +DG++    
Sbjct: 551 FTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 611 LQ-DLTQTGRLSSVDPNLQNIP------------------------IRLEQGRLIRKAFV 645

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G+   I+AF +G DI+ +T  + FN    + V+  
Sbjct: 646 PEWEDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPN 705

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y               L                              
Sbjct: 706 DRRNAKAVNFGVVYG-----ISDFGLANNL------------------------------ 730

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                     +     +     +  ++ G+    +++                RR     
Sbjct: 731 ---------GISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREIPDI 781

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                  +                                 R          + +Q  + 
Sbjct: 782 NSRNFNVRGF-----------------------------AERTAI------NSPIQGSAA 806

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG 660
           DIL   M    +          ++L VHDEIV E P+    ++  L   +M         
Sbjct: 807 DILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVKDIMESAIE--LS 864

Query: 661 LPLKAEGYEAKRY 673
           +PLKA+    K +
Sbjct: 865 VPLKADESAGKTW 877


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/687 (15%), Positives = 181/687 (26%), Gaps = 144/687 (20%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFE 76
            V          +T  A A  D      D           L  +L D     VAH+    
Sbjct: 355 HVTGEWSRGSGEVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHDVKGP 414

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEG----- 128
                   G  +     + T++ A           L +  +     E   +   G     
Sbjct: 415 SHALL-ARGWTLAGV-VLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADAD 472

Query: 129 -KALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
               +                    + +A  +         E       RL  L + E  
Sbjct: 473 VDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRL--LHEVELP 530

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +       G  +D +L+  L+   A+   +      ++    I +      L+  LF
Sbjct: 531 LVAVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEI-NLGSPKQLQTVLF 589

Query: 247 LITGIDLVDMSEG---TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
               +     ++    T    L+             L+ +R AS       +  L ++V+
Sbjct: 590 EQLDMPKTKRTKTGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQT--VEGLRKSVA 647

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DGR+  T Q   A  TGR S      QN+P                             
Sbjct: 648 DDGRIHTTYQQMIA-ATGRLSSTDPNLQNIP------------------------IRTEE 682

Query: 361 SDCVRSCII------ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              +R   +      A +G   L+ AD + IE R++A ++G++  I AF +GED++    
Sbjct: 683 GRRIREAFVVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVG 742

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F      V+ E RA  K M   L Y                                
Sbjct: 743 SRVFGVAPVDVTPEMRAKIKAMSYGLAYG-----LSAFGLSNQ----------------- 780

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                  K+     + +   +  +  GV      + E       
Sbjct: 781 ----------------------LKISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGW 818

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
               +                           RR    D+  D         ++      
Sbjct: 819 TETIM--------------------------GRRRYLPDLASDNRQRREMAERM------ 846

Query: 594 GGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                   +Q  + DI+   M +             ++L VHDE+V E        +  L
Sbjct: 847 ---ALNAPIQGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEEL 903

Query: 648 CS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               M      A  +PL       + +
Sbjct: 904 VRATMAGAADLA--VPLDVSVGVGRSW 928


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/661 (15%), Positives = 182/661 (27%), Gaps = 147/661 (22%)

Query: 44  LWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWI 94
                 +         A+P  L   L D  V  VAH    +     + L  +D P    +
Sbjct: 382 YLPLAHRYLGVPAQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVL 437

Query: 95  -CTSVLARTNGLPSSL---KNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             T + A   G    L     A  A+        + +  G++ I         +      
Sbjct: 438 GDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDISAAAMRAGG 497

Query: 149 RANHVQA-WQLFGEYC-KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            A  V A W   GE       +       +L    +    L L    I + G  +D+  +
Sbjct: 498 AAAAVLASWPRLGEQLEHAGGDGALR---KLHDELELPLALLL--AEIEEHGITLDVPYL 552

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD------MSEGT 260
             L + +  +   ++  + +L      +      L   LF   G+           S  T
Sbjct: 553 RALADELGGQLAGIERQVYELAGEEF-NLGSPKQLGHMLFEKLGLRADKMRRTKTGSYST 611

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              IL     +      I+            L+ L   V+   GR+  +     A  TGR
Sbjct: 612 NHEILESMAESHAIIPPIIEHRELLKLKGTYLDALPPLVNPHTGRIHTSFNQAVA-ATGR 670

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P                                +R   +A+ GK LV  
Sbjct: 671 LSSQDPNLQNIP------------------------IRKDIGRRIRRAFVAAPGKTLVSI 706

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RV+A ++G++  ++AF N  D++  T A+ F+ P +++  ++           
Sbjct: 707 DYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDE----------- 755

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                                +A ++ L         A    + 
Sbjct: 756 ---------------------------------RRVAKAVNYGLMYGQSEFGLAQSLGIS 782

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   + +  +   V      +             +                     
Sbjct: 783 RAQAAHYMERYFERFSTVRAYMDQVVADARAEGAAVTLL--------------------- 821

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+               R            VQ  + DI+   M     
Sbjct: 822 -----GRRRPIPDLDARNQ---QRRRAAERVAQ------NTPVQGSAADIIKLAMLRVAA 867

Query: 620 NGYD------IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++LTVHDE+V E       +    + + M     +A  +PL A    A  
Sbjct: 868 HLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEGA--YALDVPLVASAGIADN 925

Query: 673 Y 673
           +
Sbjct: 926 W 926


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%)

Query: 33  CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              AW +        +     + P   + +L DET     +++    +   + +G  +  
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394

Query: 91  KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146
             +    + A         + ++       +      +   GK       +       + 
Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   +Q         K D E T +    L      E  L  +   +   G R+D   +
Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T   
Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +      +  L + +  D ++         ++TGR S  
Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382
               QN+P                                +R   +       +  +D +
Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441
            IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   + Y
Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 720

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L + +        + FE +   + +   +     +    + L   
Sbjct: 721 G-----ISDYGLSPKLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    R     +     +L        +      SA  +  +  + M         
Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 818

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RRL    +                             QA                
Sbjct: 819 -----RRLKEEKL-----------------------------QAT--------------- 829

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 830 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%)

Query: 33  CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              AW +        +     + P   + +L DET     +++    +   + +G  +  
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394

Query: 91  KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146
             +    + A         + ++       +      +   GK       +       + 
Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   +Q         K D E T +    L      E  L  +   +   G R+D   +
Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T   
Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +      +  L + +  D ++         ++TGR S  
Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382
               QN+P                                +R   +       +  +D +
Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441
            IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   + Y
Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVY 720

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L + +        + FE +   + +   +     +    + L   
Sbjct: 721 G-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    R     +     +L        +      SA  +  +  + M         
Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 818

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RRL    +                             QA                
Sbjct: 819 -----RRLKEEKL-----------------------------QAT--------------- 829

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 830 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/666 (13%), Positives = 176/666 (26%), Gaps = 151/666 (22%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRD-----ETVMCVAHNSLFER 77
           +A+ A I     ++DDE +          +  S L + + +     +TV     N     
Sbjct: 337 FADAAEINHIGVSFDDEKIYTIY--TGEEITFSYLKKKIEELTACVKTVSIC--NIKEAL 392

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
                               + +     P     A           +    + L      
Sbjct: 393 KWITFA-----NETSAFDPIIASYLLN-PLKSDYA----------FEDVAREQLNILIDD 436

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              ++     T          +            +  + L   +D E  L      +   
Sbjct: 437 KMEEARKSCYTAYTA------YKSVFFLSDRLKEKKMEHLF--TDIEMPLAFTLFDMEQA 488

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++  + +    + +  +  +L+ +I ++  G   +      L + LF    +     +
Sbjct: 489 GVKVKAEELKVYGQQLGGKINELETEIYEIA-GETFNINSPKQLGVVLFEHLNLPNGKKT 547

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            IL     +       + L+  +  DGR+ G       
Sbjct: 548 KTGYSTAADVLEKLAPDYPIVSKILEYRQLAKLKSTYADGLANFIQEDGRIHGKFNQTV- 606

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P                                +R   +     
Sbjct: 607 TATGRISSTEPNLQNIP------------------------VRMELGRLIRKVFVPEEDY 642

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             V AD + IE R+LA  +G++  I A+    DI+  T ++ F+ P D+V+  +R   K 
Sbjct: 643 VFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQVFHIPFDEVTDLERRNAKA 702

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   +                G+     SQ++                            
Sbjct: 703 VNFGIV--------------YGISSFGLSQDLS--------------------------- 721

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +           +   + G+     D                 RR            
Sbjct: 722 ---ITRKEAGEYIDNYFKTYPGIKTFLDDTVAHAKEQGYVVTLFGRRRPVP--------- 769

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                  L S   +      G+   +                     +Q  + DI+   M
Sbjct: 770 ------ELESGNFM--QRSFGERVAM------------------NAPIQGTAADIMKIAM 803

Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
               +          +VL VHDE++ E        V ++    M +  S    +PL  + 
Sbjct: 804 IGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEAAS--LSVPLDIDM 861

Query: 668 YEAKRY 673
           +    +
Sbjct: 862 HTGNSW 867


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 200/654 (30%), Gaps = 139/654 (21%)

Query: 35  YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85
           Y  D+EPV           T    +     +    + +        F+           G
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141
           IDI    +    ++           S++ +    + +     +   GK    +    S +
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               +      +   +L+ +  + + E    L++      D E  L  +   +   G  +
Sbjct: 443 KEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
             + ++++ EL   E K +++ + +L  G   +   +  L   LF    + ++  ++   
Sbjct: 497 KKETLVEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T + +L   +      D IL     +      ++ + + +  DG++  T Q   A +TG
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKEDGKIHTTFQQTIA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   + S G  L+ 
Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSEGNMLLD 650

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA +A ++  I AF +G DI+  T ++ F    DKV+  QR+  K +   
Sbjct: 651 ADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G                                                     +
Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +   ++G+ Q  +D+             ++                   
Sbjct: 727 TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMN------------------- 767

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    ++K     + +   ++              +Q  + DI+   M    
Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
                 K    ++L VHDE++ + P      V  +   +MT        + +  
Sbjct: 812 NRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/585 (15%), Positives = 166/585 (28%), Gaps = 125/585 (21%)

Query: 98   VLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            + A       +   L +                         +      P D        
Sbjct: 582  LAAYLLDPVRNRYYLVDVARQF---------------FGWELEEGPADRPDDPACRTTQL 626

Query: 155  AWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              +      +       EL  R +     + E  L  +   + + G  +D   + +L  L
Sbjct: 627  LGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRL 686

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
              +  ++L E I +L  G   +   T  L   LF   G+ +V  ++    T   +L    
Sbjct: 687  FTRRSQELAEQIYQLA-GETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLA 745

Query: 270  ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  +L+L   +        ++ L+E +  DGR+  T Q   A  TGR S      QN
Sbjct: 746  ARHPIAELVLEYRSLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVA-ATGRLSSTQPNLQN 804

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P                                +R   +A  G +LV AD + IE RVL
Sbjct: 805  IP------------------------IRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVL 840

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            A  +G++  ++AFA G+D++  T ++ F  P+++V+ EQR + K +   L Y        
Sbjct: 841  AHYSGDEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQT----- 895

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                   L + +          FE +   + +      +  +      L+G    +    
Sbjct: 896  DYGLARALRIDRADARRFMDRYFERYPGVKRYMEETIRRARQHGEVTTLLGRRRPV---- 951

Query: 510  WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                   +      + +    V                                   +L 
Sbjct: 952  -----PEIRHRVYHIRQNAERVAINTPIQGTAADI---------------------MKLA 985

Query: 570  YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
               V    +         +R R                                      
Sbjct: 986  MIRVYRALAGEG------LRARIV---------------------LQVHD---------- 1008

Query: 630  DEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             E++ E P+    +V  L    M      A  +PL  +      +
Sbjct: 1009 -ELLVEAPEDEVPAVAALLRREMEGAFPLA--VPLVVDVKAGTNW 1050


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%)

Query: 33  CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              AW +        +     + P   + +L DET     +++    +   + +G  +  
Sbjct: 304 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 360

Query: 91  KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146
             +    + A         + ++       +      +   GK       +       + 
Sbjct: 361 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 419

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   +Q         K D E T +    L      E  L  +   +   G R+D   +
Sbjct: 420 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 472

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T   
Sbjct: 473 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 531

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +      +  L + +  D ++         ++TGR S  
Sbjct: 532 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 590

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382
               QN+P                                +R   +       +  +D +
Sbjct: 591 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 626

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441
            IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   + Y
Sbjct: 627 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 686

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L + +        + FE +   + +   +     +    + L   
Sbjct: 687 G-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 741

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    R     +     +L        +      SA  +  +  + M         
Sbjct: 742 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 784

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RRL    +                             QA                
Sbjct: 785 -----RRLKEEKL-----------------------------QAT--------------- 795

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 796 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 844


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/654 (13%), Positives = 191/654 (29%), Gaps = 155/654 (23%)

Query: 40  EPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW- 93
           E V +         + +     L     +E +  V H+S    ++ KK    +I +K   
Sbjct: 356 EEVFVISANEIKDKDGAKYFEILKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIA 412

Query: 94  ICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T + A       S   LK+    +            K     + K   +    D  ++
Sbjct: 413 FDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKDDDNI-KINETYYIKDVYEKLEKDIKKS 471

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           N  +                             E  L  +  ++   G+R+D + + ++ 
Sbjct: 472 NMEELLYTV------------------------ELPLIEVLASMECEGFRVDENRLTEIG 507

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
           E   +E + L+++I +L D    + +    L   LF    + ++  ++    T   +L  
Sbjct: 508 EKFKKEIETLEKEIHELADEEF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEK 566

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
              +    + I+     +      +  L   +  D ++  +      + TGR S      
Sbjct: 567 LKDSHPIIEKIIEYRQITKLDSTYVEGLKNVIDEDAKIHSSFNQTV-TTTGRLSSTEPNL 625

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386
           QN+P                                +R   + + +   +  AD + IE 
Sbjct: 626 QNIP------------------------IKHEMGREIRKVFVPNNDESVIFSADYSQIEL 661

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+L+ IA ++  I AF + +DI+  T ++ F  PID+V+   R+  K +   +       
Sbjct: 662 RILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV------ 715

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   +    +     +  
Sbjct: 716 --------YGIG------------------------------AFSLSKDINVSRKEAKEY 737

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              + +++  V +   ++                                D  +    +R
Sbjct: 738 IDTYFSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNR 771

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           +    +++     +     +L              +Q  + DI+   M            
Sbjct: 772 KRYIPEIQSRNKIVRGFGERL---------AMNTPIQGSAADIIKLAMVEVYNELKNRNL 822

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++          V   +   M         +PL+A+    + +
Sbjct: 823 KSTLILQVHDELILNVYKDELEEVKEMVVDKMENVMKLL--VPLEADVNVGETW 874


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/635 (14%), Positives = 178/635 (28%), Gaps = 136/635 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC 113
           +++ L    +     N+  E I+    LG+ I +  +    +++       +   L    
Sbjct: 383 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDF-DFLLVSYLLDTTDNDNQLATLA 440

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW---QLFGEYCKRDVEAT 170
              N          G  +  +  + +     +   +A+ +       +      +  E  
Sbjct: 441 NRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDHQQAELY 500

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R++          E  L  +  ++   G ++D   + KL +   Q   +L++ I +    
Sbjct: 501 RQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQ 550

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF    I  +  ++    T  ++L           LIL     +  
Sbjct: 551 EF-NINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 609

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L E V+ D     T      ++TGR S      QN+P                
Sbjct: 610 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP---------------- 653

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   +    G ++  +D + IE RVLA + G++   KAF +GE
Sbjct: 654 --------DRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGE 705

Query: 407 DIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           DI+  T    F    D+  + +QR   K +                    G+     +Q 
Sbjct: 706 DIHAATARSIFGLSTDQKITFDQRRRAKAVN--------------FGIVYGISDFGLAQR 751

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                 + + + +  +   V      + 
Sbjct: 752 ------------------------------LGTSRIEGKEIIQTYFHEFPKVKNWIDSII 781

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RR    D+      L +   
Sbjct: 782 ALAHKQGYVETIAQ--------------------------RRRYLPDIHSKNFNLRSFA- 814

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639
              R  T         +Q  + DI+   M    +          ++L VHDE++ E P  
Sbjct: 815 --ERTAT------NTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQ 866

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               +  L   +M         +PL+ E +    +
Sbjct: 867 EIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 899


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/609 (14%), Positives = 169/609 (27%), Gaps = 146/609 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
           +  ++    G+           +LA      ++                      +    
Sbjct: 362 DLTVWALREGVRARPG--DDPLLLAYLYDPSNN------------QPASTVRRYGVGDWT 407

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            +    +             W+   +      E    L+       + ER L  +   + 
Sbjct: 408 DRARDRALAARW-------LWREMSDRL----EGEERLWWLYR---EVERPLQGVLAAME 453

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---- 251
            RG ++D+D +L L + +A E ++L+ +I +L      +      L   L+   G+    
Sbjct: 454 RRGVKLDVDYLLALSQELAAELERLEAEIHRLAGHPF-NLNSRDQLETVLYDELGLAAGR 512

Query: 252 -DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309
                    T  S+L          + IL     +      L+ L + V    GRL    
Sbjct: 513 RTAKTGKRSTSASVLETLRGAHPIVEKILQYRELAKLKGTYLDPLPKLVHPRTGRLHTRF 572

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P                                +R   +
Sbjct: 573 HQTG-TATGRLSSSDPNLQNIP------------------------IRTEIGRRIRKGFV 607

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  LVVAD + IE RVLA ++G++  I+ F  G DI+  T A  F            
Sbjct: 608 AGEGYLLVVADYSQIELRVLAHLSGDENLIRIFQEGRDIHTQTAAWMFGVE--------- 658

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
                                              +V+         +  +  +      
Sbjct: 659 -----------------------------------DVEVDPFRRRAAKTINFGVLYGMSA 683

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + +  +     +     +   + GV    + + E                       
Sbjct: 684 HRLSRELGIDYGEAQAFIDRYFDSYPGVRAFMERVLEEARERGY---------------- 727

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                     +     RR    ++      +  A  ++              VQ  + D+
Sbjct: 728 ----------VETLFGRRRHVPELLSKARNVREAAERV---------AFNMPVQGTAADL 768

Query: 610 LCEGMK----NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLK 664
           +   M          G  ++L VHDE+V E P+     +   + + M +   W   +PL 
Sbjct: 769 IKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKATMEEA--WRLDVPLA 826

Query: 665 AEGYEAKRY 673
            E    + +
Sbjct: 827 VEVGVGRDW 835


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/673 (14%), Positives = 171/673 (25%), Gaps = 163/673 (24%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW +E                    L  + V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L     
Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187
             + +       +    +   L     K+           L  L          D E  L
Sbjct: 423 LETDEVVYGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G ++D   + ++         KL +DI ++      +      L + LF 
Sbjct: 483 ANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFE 541

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             G+             T   +L            IL     +      +  L + +  D
Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 602 GKIHTRYMQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
            +R   + S     L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F    
Sbjct: 637 LIRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L                       
Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNL----------------------- 728

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                            +     +     +  ++ G+     ++                
Sbjct: 729 ----------------GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFH- 771

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                    RR    D+      +        R          +
Sbjct: 772 -------------------------RRRELPDINSRNFNVRNFA---ERTAI------NS 797

Query: 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTK 653
            +Q  + DIL   M N  K          ++L VHDEI+ E P     ++  L    M  
Sbjct: 798 PIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMED 857

Query: 654 NPSWAKGLPLKAE 666
               A  +PL A+
Sbjct: 858 AVELA--VPLIAD 868


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/657 (15%), Positives = 186/657 (28%), Gaps = 158/657 (24%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A +T  A AWD   V             +L  +     +      +  +  +     G+D
Sbjct: 333 AKLTGLAAAWD-GKVY-----RGPTDLEELKGFHELSALA-----AK-DLAVLAGKEGLD 380

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           IP        +LA     P++ + A                           +  P    
Sbjct: 381 IPPG--DDPMLLAYLYD-PANSEPASTVR----------------RYGAGDLVADPVSHA 421

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
             A     W+      + D      L+       + E+ L  +   +  RG  +D+  + 
Sbjct: 422 QAAW--LLWETLSARTQGDE----RLWWLYR---EVEKPLAAVLAQMECRGVALDVPYLQ 472

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLK 262
           +L E + +E   L+ +I +L      +      L   L+   G+             T  
Sbjct: 473 ELSEELGKELGYLEAEIHRLAGHPF-NVNSRDQLEAILYDELGLQAGGKKTTTGKRSTAA 531

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           S+L            IL+    +      L+ L + +    GRL        A  TGR S
Sbjct: 532 SVLEEMRSLHPIVGKILDYRELAKLKGTYLDPLPKLIHPKTGRLHTRFNQTVA-ATGRLS 590

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   +A  G  LVVAD 
Sbjct: 591 SSDPNLQNIP------------------------VRTEVGRKIRKAFVAEKGYCLVVADY 626

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA ++G++   K F    DI+  T A  F    +KV  + R   K +      
Sbjct: 627 SQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEKVDPQHRRAAKTIN----- 681

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   + +  +   
Sbjct: 682 ---------FGVLYGMS------------------------------AHRLSGELGISYA 702

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                 + + A +  V    +                            +   +   ++ 
Sbjct: 703 EASGFIERYFASYPKVRLWIEK--------------------------TLAEGRERGYVE 736

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
               RR   +D++     +  A  ++              VQ  + D++   M       
Sbjct: 737 TMFGRRRFVADLESKNRAIKEAAERM---------AFNMPVQGTAADLMKLAMVKLYPKL 787

Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G  +VL VHDE+V E P+     V  + C +M     W   +PL+        +
Sbjct: 788 KERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV--WELDVPLEVGVGIGHNW 842


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/703 (23%), Positives = 278/703 (39%), Gaps = 84/703 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           LF+D E  S   L + G+  Y +        + +    +   D  E  + +P  ++ +L 
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWEYGNVVPKQIVMHLT 65

Query: 63  DETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114
               + VAHN+ F+     ++ ++  G     +I   +  C++  AR NGLP SL  AC 
Sbjct: 66  SGG-LFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 124

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL       K  EG    A++ K    +P  D T  +H + +    +Y   D +A   ++
Sbjct: 125 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG I +
Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +       
Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 295

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQALNR 349
           L   V   GRL+    ++GA   GR +              PR  +        + A  R
Sbjct: 296 LRAHVG--GRLQHHTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 352

Query: 350 GETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           G+            +       R    A   G  LV ADL+GIEAR+  W+A +  K++A
Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G D Y       ++   D V+K+QR +GK  +LALG+ G    F +MA++ G+ L  
Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLPP 472

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
              +                                        +   WRA      + W
Sbjct: 473 EQVS---------------------------------------EIVYNWRAGRPAFERWW 493

Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
                     + + G   +      N  ++   +  R + + LPS R + Y + +     
Sbjct: 494 SLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 553

Query: 575 GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           G    +           T   K+   N  Q +SRD+    + +  +   +IV  ++DE +
Sbjct: 554 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRVE-EIVHHIYDEAL 612

Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 613 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/673 (14%), Positives = 171/673 (25%), Gaps = 163/673 (24%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW +E                    L  + V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L     
Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187
             + +       +    +   L     K+           L  L          D E  L
Sbjct: 423 LETDEVVYGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G ++D   + ++         KL +DI ++      +      L + LF 
Sbjct: 483 ANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFE 541

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             G+             T   +L            IL     +      +  L + +  D
Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 602 GKIHTRYMQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
            +R   + S     L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F    
Sbjct: 637 LIRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L                       
Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNL----------------------- 728

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                            +     +     +  ++ G+     ++                
Sbjct: 729 ----------------GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFH- 771

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                    RR    D+      +        R          +
Sbjct: 772 -------------------------RRRELPDINSRNFNVRNFA---ERTAI------NS 797

Query: 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTK 653
            +Q  + DIL   M N  K          ++L VHDEI+ E P     ++  L    M  
Sbjct: 798 PIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEA 857

Query: 654 NPSWAKGLPLKAE 666
               A  +PL A+
Sbjct: 858 AVELA--VPLIAD 868


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/658 (11%), Positives = 173/658 (26%), Gaps = 130/658 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQS----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
             ++     V   +          +         ++  + ++ +   + I  K+  GI +
Sbjct: 348 LCFSTKLHEVSYINLPNDKNKALEIILQFQAIFENKNKILISADVKNDIIWLKRA-GIKL 406

Query: 89  PSKRWICTSVLARTN--GLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                    +        +   L       LN+    +K    K       +   ++   
Sbjct: 407 K-NDIFDIKIAHYVLHPDISHDLGRVALEYLNYKLSGSK----KEDQQLTLQFDEEAGTE 461

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           D   A          E    D++ T      L   ++ E  L  +   +   G  ID + 
Sbjct: 462 DNDFAEKTDVIFQLHEKLCDDLQQT----GLLALYNNIEMPLVFVLADMEYEGVSIDCNE 517

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGT 260
           +  +   + +    ++++I +L      +      L   LF    I             T
Sbjct: 518 LQSISSELKERIDIIEKEIYELAHQEF-NISSPKQLGEVLFDKLKIDSNHKKTKSGQYST 576

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
            + +L          + IL+              L   +    G++        A  TGR
Sbjct: 577 SEQVLVKLEDEHPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEA-ATGR 635

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   +   +      
Sbjct: 636 LSSLNPNLQNIP------------------------IRTEEGRKIRKAFVTGNDDYLFFS 671

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + +E R++A ++ +   I AF +G D++  T +K ++  +++V+ E R   K     
Sbjct: 672 ADYSQVELRLMAHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFG 731

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +          F+ +   + +     ++  +    + +
Sbjct: 732 IIYG-----ISAWGLAERLHISRKEGKELIDGYFDLYPGVKKYMEESVEKARKKEFVETI 786

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           +G    L     R            +                                  
Sbjct: 787 MGRRRYLRDINSRNAV---------VRGMAER---------------------------- 809

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                              + +N              K+    +Q           K   
Sbjct: 810 -------------------NAINAPIQG---SAADIIKMAMICIQ-----------KRIQ 836

Query: 619 KNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           + G    +++ VHDE+  +   +  + + +L  + M         +PL         +
Sbjct: 837 EEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVTNCMEHVIK--LSVPLTVSTGFGNNW 892


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/667 (15%), Positives = 180/667 (26%), Gaps = 144/667 (21%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSL------FE 76
           E  +I   A +  D  V   D         +   L++      V     +        FE
Sbjct: 334 EDKLIKGAALSTGDATV-YVDCAGFITPDYLGHKLIEI-SKAGVKLCFWDLKNAMHILFE 391

Query: 77  RI-------LFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKM 125
            +       + +K    +I        +V A       +       A   L         
Sbjct: 392 LMNQDEKAAVLEKGGKTEIFPTAV-DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQAD 450

Query: 126 EEGKALIARFCKGSIDSPPYD-CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             GK  +    +              N   A+  F       V A  +    L    + E
Sbjct: 451 LFGKTKLNAALEDDSMLEAVTTYACYNAYVAFAAF-----EKVIAEIKEEGMLDIYENIE 505

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L      +  +G  +D + + +    ++    +L++ I         +      L + 
Sbjct: 506 MPLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYSQAGEEF-NINSPKQLGVI 564

Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           LF   GI+    ++    T   +L   + T      IL     +       + L+  V  
Sbjct: 565 LFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQLAKLKSTYADGLAACVDE 624

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+R T      + TGR S      QN+P                              
Sbjct: 625 DGRIRSTFMQTV-TATGRISSTEPNLQNIP------------------------IRMELG 659

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R           + AD + IE RVLA ++G++  I AF  G+DI+ +T +  FNTP 
Sbjct: 660 REIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTASLVFNTPF 719

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D+V+  QR   K +                    G+                        
Sbjct: 720 DEVTDLQRRRAKAVNF--------------GIVYGIS----------------------- 742

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                      A    +     +     +   +  + +  + L                R
Sbjct: 743 -------AFGLAKDIGVGRKEAQEYIDNYFVAYPKMHEFLEGLKSHAKEKGYVTTMYGRR 795

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           R                                 + +  N  T Q             + 
Sbjct: 796 R------------------------------PIPELASSNFMTRQFGE-----RVAMNSP 820

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
           +Q  + DI+   M N             ++L VHDE++ ET ++    V   +   M   
Sbjct: 821 IQGTAADIIKIAMVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQVEKLIAEEMENA 880

Query: 655 PSWAKGL 661
              A  L
Sbjct: 881 AKLAVDL 887


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/643 (13%), Positives = 174/643 (27%), Gaps = 159/643 (24%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106
             +      L +   + +   + HN+     +  K L IDI       T + A       
Sbjct: 358 ENEEKSKEYLKKLFENTS-EKIIHNAKNLFTVLSK-LDIDIN-NFVFDTEIAAYLIESSD 414

Query: 107 --SSLKNACLALNFSE---HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
              +LK                ++     L  R  +                        
Sbjct: 415 KEYTLKTLFETYLHETYQDISQEISNLSNLYQRLKEKIK--------------------- 453

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                     ++   L  +   E  L  +   +   G+++D + + +L+E    E     
Sbjct: 454 --------ELQMEDLLYKI---ELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQ 502

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278
           ++I ++      +      L   LF    + ++  ++    T   +L          D I
Sbjct: 503 KEIYEMAGEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKI 561

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                 +      +  L   +  DGR+  +      + TGR S      QN+P       
Sbjct: 562 TYYRQLTKLNSTYVEGLIHVIDQDGRIHSSFNQTV-TTTGRLSSTEPNLQNIP------- 613

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                    +R   +       ++ AD + IE RVLA +A ++ 
Sbjct: 614 -----------------IKYEMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDEN 656

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
              A+    DI+  T ++ FN P+D+V+KE+R+  K +   + Y                
Sbjct: 657 MKTAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVYGISDFA---------- 706

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              +   K+     +     + +++  V
Sbjct: 707 ----------------------------------LSEDLKISKKEAKQYIDTYFSRYPKV 732

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +            +      + RR         +       IV     RL         
Sbjct: 733 KEYISSTIAKAEKELYVNTIFNRRRFIPEITSSNK-------IVKALGDRLAM------- 778

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631
                                   +Q  + DI+   M N        K    ++L VHDE
Sbjct: 779 ---------------------NAPIQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDE 817

Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           I+         +V  L    M     +   +PL+ +      +
Sbjct: 818 IILNVYKDELETVKELVKKEMESVIDF--SVPLEVDINTGTTW 858


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 101/681 (14%), Positives = 189/681 (27%), Gaps = 149/681 (21%)

Query: 28  AVITLCAYAWDD---EPVKLWDRTEQSAMPSD---------------LLQYLRDETVMCV 69
           A I     +  +           +    +P+                L   L +  V+ +
Sbjct: 373 ANILGLCLSLYNIYINQYIYIPISNNIQIPNQYNNKNYLSLKNVLLNLQPILENPAVVKI 432

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK 129
             N  F   L K+   I++  K      +        ++        N    L K     
Sbjct: 433 GQNMKFNYSLLKRH-NINLSGK-IFDVILEFYILYGTTN------YQNIKRFLNKETFNS 484

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            L  +    + ++      +  + ++      Y  + + A  +L + L P          
Sbjct: 485 ILNFQQSYDNYNNYIVKEIKNIYQES-----LYAIQLILAIFDLHQILWPQLYSNDKLKK 539

Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              + E  L  +   I   G  ID  L+      +      L     +L  G   +    
Sbjct: 540 IFQEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLA-GTSFNLDSI 598

Query: 239 YALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             L+  L+    + +       S  T + +L   +       +IL   + S       N 
Sbjct: 599 KQLQEILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYRSLSKLKSTYTNK 658

Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L   V+    R+  +      + TGR S      QN+P                      
Sbjct: 659 LISMVNTESNRIHTSYNQT-RTATGRLSSANPNLQNIP---------------------- 695

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   IA +   +V AD + IE R++A ++ +   I  F +G+DI+ TT 
Sbjct: 696 --NRNHDGRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTA 753

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F T ++ V+ EQR   K +   L Y               L +  +         F+
Sbjct: 754 SEIFVTSLNLVTNEQRHQAKTINFGLIYGMS-----AFGLSKQLSVTCYEAQKYVDRYFQ 808

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            +     +   ++D   ++     L G    L           +        +G      
Sbjct: 809 RYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYL---------PNIYSKNLSKKKGAERAAI 859

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                 +                                             + M    Y
Sbjct: 860 NAPMQGSAADI---------------------------------------IKKAMISINY 880

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652
             K  +  VQ          M           + VHDE+V E  +    +    +  LM 
Sbjct: 881 WLKQDDIPVQ----------MI----------MQVHDELVFEVQNNFIDTAIKQIKKLME 920

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
           +   +   +PLK +    K +
Sbjct: 921 EC--FILDVPLKVDIGVGKNW 939


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/606 (15%), Positives = 163/606 (26%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+         +LA      ++  +                        
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  K L    + E+ L  +   +
Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249
              G R+D+  +  L   +A+E ++L+E++ +L      +      L   LF        
Sbjct: 447 EATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
           G         T  ++L          + IL     +      ++ L   V    GRL   
Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                         +R 
Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                M           L VHDE++ E P      V  L    M K    A  +PL+ E 
Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823

Query: 668 YEAKRY 673
              + +
Sbjct: 824 GMGEDW 829


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 200/654 (30%), Gaps = 139/654 (21%)

Query: 35  YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85
           Y  D+EPV           T    +     +    + +        F+           G
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141
           IDI    +    ++           S++ +    + +     +   GK    +    S +
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               +      +   +L+ +  + + E    L++      D E  L  +   +   G  +
Sbjct: 443 KEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
             + ++++ EL   E K +++ + +L  G   +   +  L   LF    + ++  ++   
Sbjct: 497 KKETLVEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T + +L   +      D IL     +      ++ + + +  DG++  T Q   A +TG
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   + S G  L+ 
Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSGGNVLLD 650

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA +A ++  I AF +G DI+  T ++ F    DKV+  QR+  K +   
Sbjct: 651 ADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G                                                     +
Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +   ++G+ Q  +D+             ++                   
Sbjct: 727 TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMN------------------- 767

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    ++K     + +   ++              +Q  + DI+   M    
Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
                 K    ++L VHDE++ + P      V  +   +MT        + +  
Sbjct: 812 NRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865


>gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
 gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
          Length = 1022

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/699 (12%), Positives = 171/699 (24%), Gaps = 172/699 (24%)

Query: 33   CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-K 91
               A                    + + L D  +    H+      + +     DI    
Sbjct: 436  LGLAVTAGHAIEISLDTPG-----IREALADPALPKQVHDLK---AVLRALQPHDITLAG 487

Query: 92   RWICTSVLARTNGLPSS---LKNACLA---LNFSEHLTKME--EGKALIARFCKGSIDSP 143
                  + +       S   L +          +   TK    + K L       +  + 
Sbjct: 488  PITDVMLQSYLLNPTHSSHTLIDLAARTTSRALTHQPTKDNPNDPKRLPEAAAAIARLAV 547

Query: 144  PYDCTRANHVQAWQLFGEYCKRDVEAT--------------------------RELFKRL 177
                  A       +  +        T                            L    
Sbjct: 548  TLGEQLAEVPTTHVIPKDDPALGGAITTEMLFADKAQVEGARAQGAASASSGPLALNPEA 607

Query: 178  IPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             PL++           +  L  +   +   G R+D +L+ ++   +A     L E I   
Sbjct: 608  SPLNEHSTLAEVYEQLDLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYAS 667

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKSILSHSNITQLAKDLILNRL 282
            +     +      L   LF    +       +     T + IL           ++L   
Sbjct: 668  SGHRF-NINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYR 726

Query: 283  ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                     L+ L      +GR+  T    G + TGR S      QN+P           
Sbjct: 727  QLQKLKSTYLDQLPSLTDVNGRIHTTFNQVG-TATGRLSSINPNLQNIP----------- 774

Query: 343  TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 +R+  IA+ G  L+ AD + IE R++A  + +   + A+
Sbjct: 775  -------------IRTAVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLDAY 821

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G+DI+  T A+ F      + KE RA  K +   +                G+     
Sbjct: 822  RTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIV--------------YGISPFGL 867

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
            +  +                                     +   + +  +++GV    +
Sbjct: 868  AAQLGIDQ------------------------------KVAKAYIERYFDRYKGVATFIE 897

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
               E          +                            R     D++        
Sbjct: 898  QTLETVRRDQAVKTAF--------------------------GRVRPIPDIQSRNPNQRG 931

Query: 583  ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
               +               +Q  + D++   M               + L VHDE++ + 
Sbjct: 932  FAERT---------AVNTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELLFDV 982

Query: 637  PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674
                   +  L    M     +   +P+ AE      +R
Sbjct: 983  VPEEADEMQELVKTEMESAAEF--SVPIVAEVGLGDNWR 1019


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/670 (12%), Positives = 172/670 (25%), Gaps = 146/670 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLF---ER------- 77
                A  + ++            + S +L   L           + +   +        
Sbjct: 355 EFLGMAVCFGEKDTYF--FKAGEELTSSVLSDLLTHSEA------AGYMTLDLKPQLGLL 406

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL-NFSEHLTKMEEGKALIA 133
            + ++     +  K      + A            ++      +          GK+   
Sbjct: 407 HMIEQRENGCLNQKNIFDNVIAAYLLNPLKNEYPYEDIAKDYCSLMIPSRVDLLGKSGYD 466

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                  D  P    +     A+  F        E      ++L      E  L      
Sbjct: 467 LAM----DEKPEGFLKTVCFMAYTAFSSKKAMMEELKATGMEQLYETI--EMPLVFTLAD 520

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  ID   + +  E +A   K+L+  I +       +      L + LF    +  
Sbjct: 521 MEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAGEEF-NINSPKQLGVILFEKLEMPY 579

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              ++    T   +L            IL     +       + L+  +  DGR+  +  
Sbjct: 580 GKKTKTGYSTAADVLDKLAPEYPIVADILEYRQLTKLKSTYADGLANYIKEDGRIHTSFN 639

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   + 
Sbjct: 640 QT-ITVTGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFLP 674

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           + G   + AD + IE RVLA ++G++  I+A+   +DI+  T ++ F+ P D+V+  QR 
Sbjct: 675 AKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRR 734

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   + Y        +      L                                 
Sbjct: 735 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 757

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +         + +   +  +      L E              RR        
Sbjct: 758 -------ISKKEAAEYIERYFETYPKIKTFLDGLVEDAKKNGYVTTMFGRRRPVPELSSS 810

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                                   G+   +                     +Q  + DI+
Sbjct: 811 NFMQ-----------------RSFGERVAM------------------NAPIQGTAADII 835

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
              M               +++TVHDE++ ET +     V  +    M +       + L
Sbjct: 836 KIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEILTEGMQQAAD--LKVAL 893

Query: 664 KAEGYEAKRY 673
             + +  K +
Sbjct: 894 AIDLHTGKNW 903


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 198/654 (30%), Gaps = 139/654 (21%)

Query: 35  YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85
           Y  D+EPV           T    +     +    + V        F+           G
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDIVKSFKEEFESKDVNK----LSFDIKPCIYHLMRYG 383

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141
           IDI    +    ++           S++ +    + +     +   GK    +    S +
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKSLEDITGKGRSKKTILESDE 442

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               +      +   +L+ +  + + E    L++      D E  L  +   +   G  +
Sbjct: 443 KEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
             + ++++ EL   E K +++ + +L  G   +   +  L   LF    + ++  ++   
Sbjct: 497 KKETLVEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T + +L   +      D IL     +      ++ + + +  DG++  T Q   A +TG
Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTIAKLKTTYIDGMVDLIKEDGKIHTTFQQTIA-QTG 614

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   + S G  L+ 
Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSQGSVLLD 650

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA +A ++  I AF NG DI+  T ++ F    DKV+  QR+  K +   
Sbjct: 651 ADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G                                                     +
Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +   ++ + Q  +D+             +                    
Sbjct: 727 TRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIMK------------------- 767

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    ++K     + +   ++              +Q  + DI+   M    
Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
                      ++L VHDE++ + P+     V  +   +MT        + +  
Sbjct: 812 NRLNEENLKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHAVDLKVDMKIDV 865


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/628 (14%), Positives = 180/628 (28%), Gaps = 122/628 (19%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113
            + +L DET     +++    +   + +G  +    +    + A         + ++   
Sbjct: 317 FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTGIAF-DVLLAAYLLDTNDNNADIEGVA 374

Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +      +   GK       +       +   +   +Q         K D E T +
Sbjct: 375 QHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT-----SKLDSELTEK 429

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
               L      E  L  +   +   G R+D   + ++Q   ++  K+++E I        
Sbjct: 430 NQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF 487

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF   G+ ++  ++    T   +L            IL     +    
Sbjct: 488 -NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQS 546

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + +  D ++         ++TGR S      QN+P                  
Sbjct: 547 TYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSVDPNLQNIP------------------ 587

Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +       +  +D + IE RVLA I+ ++   +AF  G+DI
Sbjct: 588 ------IRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 641

Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           + +T  + F     + V+   R   K +   + Y               L + +      
Sbjct: 642 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQY-----LGITRKQAQQY 696

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             + FE +   + +   +     +    + L            R     +     +L   
Sbjct: 697 IDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR---------RRYLSDINSRNFNLRSF 747

Query: 528 FAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                +      SA  +  +  + M              RRL    +             
Sbjct: 748 AERTAINTPIQGSAADILKIAMIEMA-------------RRLKEEKL------------- 781

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                           QA                   ++L VHDE+V E P++    +  
Sbjct: 782 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 807

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L   +M    S    +PL  +    K +
Sbjct: 808 LVKEVMEHAVS--LHVPLITDSSWGKTW 833


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/654 (13%), Positives = 177/654 (27%), Gaps = 149/654 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
              A +     +   +        L   L D T+    H+          T  I +    
Sbjct: 405 LGVAVEAGTALVLPLST-------LRPLLEDATIPKRVHDLKSTLRALS-TQDIALRG-A 455

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                + +       +                        ARF   ++     +      
Sbjct: 456 VDDVMLYSYLLNPTHTTHRLSDV----------------TARFRNHALRETGENELPEAA 499

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                +F        E  RE   ++    D    L  +   +   G RID +++  L + 
Sbjct: 500 H---AIFTLAPTLREEVEREDTLKVYEQID--LPLAPVLLAMEQHGVRIDSEMLRALGDR 554

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKSILSH 267
           +A +  ++ + I +       +      L   LF    +       +     T + +L  
Sbjct: 555 LAADMHRVSQQIYEQAGHRF-NINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLEE 613

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                    L+L     +      +++L     S GR+  T    G + TGR S      
Sbjct: 614 LAAHNDVPRLVLEFRQLAKLKSNYVDSLPLLADSQGRVHTTFHQVG-TATGRLSSTNPNL 672

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R+  IA+ G+KL+ AD + IE R
Sbjct: 673 QNIP------------------------VRTALGREIRAAFIAAPGRKLLSADYSQIELR 708

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           ++A  + +   + A++ G+DI+  T ++ F    + + KE R   K +            
Sbjct: 709 LMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNF---------- 758

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+     +Q +                                         
Sbjct: 759 ----GIVYGISPFGLAQQLGIDQH------------------------------EARQYI 784

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             + A++QGV      + E                              +  +     R 
Sbjct: 785 DTYFARYQGVRAYIDRVLEQTRR--------------------------EQRVRTLFGRV 818

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD---- 623
               D++   +       +               +Q  + D++   M             
Sbjct: 819 RPIPDIQSRNANQRGFAERT---------AVNTPLQGTAADLIKLAMIRIDARIKKKNLQ 869

Query: 624 --IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
             + L VHDE++ + P+     V  L    M         +P+ A+    + +R
Sbjct: 870 TLMTLQVHDELLFDVPEAEVEVVEDLVRHEMEHVVE--LKVPIVADIGIGENWR 921


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 192/662 (29%), Gaps = 136/662 (20%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             A A +       D T  +      L ++L D T     H++           G+ +  
Sbjct: 357 GLAIADESGRAAYVDLTTLAPEDEQALAEWLADVTKAKALHDAKGPMHALA-ARGLTLAG 415

Query: 91  KRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                T++ A            ++  L     E                +G +D      
Sbjct: 416 LT-NDTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETS------KQAAGQGMLDLGDVGA 468

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           T+ +   A           ++        +  +++ E  +  +  T+   G  +DLD + 
Sbjct: 469 TQGDDAMARAAAVATLAAALDEAVADVGGIELMAELELPIVEVLATMEQAGIAVDLDALH 528

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260
           +L+     +     +D      G   +      L++ LF   G+                
Sbjct: 529 ELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLPKTKKTKTGYTTDAEA 588

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           +  +   +    L   L+ +R AS   +   +  L +++  DGR+  T Q   A  TGR 
Sbjct: 589 IADLSEKAPHPFL-DALLRHRDASKLRST--VQGLIKSIGDDGRIHTTYQQTIA-ATGRL 644

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            +   +R   +   G   L+ A
Sbjct: 645 SSTDPNLQNIP------------------------IRTESGRRIRRVFVVGEGYDCLMSA 680

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RV+A ++G++  I+AF +GED++    ++ F     +V+ E RA  K M   L
Sbjct: 681 DYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGL 740

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL                                   + + ++ 
Sbjct: 741 --------------AYGLS------------------------------AFGLSKQLRIS 756

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               + +   +  +  GV    + + +           +                     
Sbjct: 757 TAEAQRLMDGYFERFGGVRDYLRQIVDDARATGYTETMM--------------------- 795

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+  D         ++              +Q  + DI+ + M    +
Sbjct: 796 -----GRRRYLPDLTSDNRQRRDMAERM---------ALNAPIQGSAADIMKKAMLGVDE 841

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E        V  +    M      A  +PL       + 
Sbjct: 842 ALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVREQMGAAADLA--VPLDVNVGTGRS 899

Query: 673 YR 674
           ++
Sbjct: 900 WQ 901


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 116/744 (15%), Positives = 211/744 (28%), Gaps = 143/744 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDE 64
           +D ET                   I         E          S M  + L   L  +
Sbjct: 81  LDTETTGLN----------VVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKDQLPLD 130

Query: 65  TVMC-VAH---------NSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112
            V   +           N+ F+  +    +GI+   K +  T + A       P  LK  
Sbjct: 131 VVKKYIMQLENTKLDFSNAHFDLQVLYWQMGIN-NIKAYWDTQLAANLLNENEPHGLKYL 189

Query: 113 CLALNFSEHLTKMEEGKALIARF----CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV- 167
                      +    K L               P               +     +   
Sbjct: 190 YEKY----VKKEDTNSKQLATFGTLFRGIPFTKIPLDIAYLYAGKDPKMSYELAEFQRKY 245

Query: 168 -------EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                     R L      + D E         +  +G ++DLDL  KL     Q++ ++
Sbjct: 246 LNNTDADVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQKKAEV 305

Query: 221 DEDIVKLTDGIIR--------------------SSRQTYALRMYLFLITGIDLVDMSE-- 258
           +E +    +   +                    +      L ++ + + G+  VD  +  
Sbjct: 306 EEKLKIEFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPVDREKPR 365

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
           GT   IL   ++      LIL            ++ L   +S   G++  T   YG + T
Sbjct: 366 GTGADILGKFDVP--VAKLILEYRELDKLLGTYIDKLPTVLSKRTGKIHCTFNQYG-TVT 422

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR+S      QN+P   +                            +R   I  +G  L+
Sbjct: 423 GRFSSDSPNLQNIPSHNKD---------------------------IRKMFIPDDGNILI 455

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV------------S 425
             D +  E R LA ++G++  IKA+ NG+DIY T  +  +  P ++              
Sbjct: 456 GGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNPDGTTNTIG 515

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
           K++R+  K + L + Y  G            L+L +          F  + + +      
Sbjct: 516 KQRRSNLKGVVLGIIYGRGVNSIAEK-----LNLTKKEAQSIIDEFFTLFPKVKQFTEDS 570

Query: 486 QDQYPEFAVKDKLIGTACELVKKA---WRAKHQ------GVLQLWKDLTEGFACVVQEGG 536
                E      L G    L       +  K++           +    +     V E  
Sbjct: 571 IRMARELGYVTTLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTADDVENDEVPEYV 630

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +S   +    R   +R    +                          +Q  R+      
Sbjct: 631 QLSYTAMLEKSRFDKKRKNVILSKARTEG---------ISIKNNTGLIAQAERQ------ 675

Query: 597 LTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649
              + +Q  + D+    M          + GY +++ VHDEI+ + P      V  +   
Sbjct: 676 CVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPILES 735

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
            M         +P+  +    K +
Sbjct: 736 CMLNAVKLV--VPMSVDIDITKCW 757


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/597 (13%), Positives = 159/597 (26%), Gaps = 128/597 (21%)

Query: 92  RWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                ++ A          +        L  +         K  +    +   +S  +  
Sbjct: 390 GIFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVPSRADWLKKMTLTEASEKEKESFGH-- 447

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                  A      Y             RL    + E  L      +   G  ++ D + 
Sbjct: 448 --YLAYSAMIPVQAYSTLKKRLEETGMDRLFD--EIEMPLVYALYDMEKAGIAVEKDALA 503

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +    +     +L+++I +L  G   +      L + LF   G+     ++    T   I
Sbjct: 504 EYGSRLTGRIDELEKNIYELA-GESFNINSPKQLGIILFEKLGLPFAKKTKTGYSTSADI 562

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGC 323
           L            IL     +       + L+  +  D  R+ G       + TGR S  
Sbjct: 563 LEKLRTYDPIVGQILEYRQLTKLKSTYADGLAGYIRPDDQRIHGKFNQT-ITATGRISST 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +       V AD + 
Sbjct: 622 EPNLQNIP------------------------VRMELGRLIRKVFVPKEDCIFVNADYSQ 657

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA +AG++  I+A+   +DI+  T ++ F+TP D+V+  QR+  K +   + Y  
Sbjct: 658 IELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFDEVTPAQRSNAKAVNFGIVYG- 716

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                 +      L                                        +     
Sbjct: 717 ----ISSFGLSQDLS---------------------------------------ITKKEA 733

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           E   + +   + G+        E              RR                     
Sbjct: 734 ENYIQQYFRTYPGIKAFLDRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQ--------- 784

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
                      G+   +                   + +Q  + DI+   M    +    
Sbjct: 785 --------RSFGERIAM------------------NSPIQGTAADIIKIAMVRVNRRLKR 818

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L +HDE++ E       +V  +    M    + A  +PL+ + +    +
Sbjct: 819 QHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAATLA--VPLEIDMHTGHNW 873


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 91/639 (14%), Positives = 182/639 (28%), Gaps = 141/639 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVL-ARTNGLPSS 108
             +   L   TV     N  F+    +  +G     I + +  +    +L +      ++
Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFD--MLLVSYLLNTTNN 413

Query: 109 LKNA---CLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +         F+   T +   GK    +         P      +H+       +   
Sbjct: 414 SNDVGTVAKLHGFANIKTDEEVYGKGAKKKID-------PEAPEFFDHIVHKAKAIDQLH 466

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D+    +   +     D E  +  +   +   G +++ + + ++     +   ++++ I
Sbjct: 467 NDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTI 526

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +       +      L   LF    + ++  ++    T   +L            +LN 
Sbjct: 527 FQEAGEEF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNY 585

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              S      ++ L + +  +     T      ++TGR S      QN+P          
Sbjct: 586 RQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIP---------- 635

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   +      ++  +D + IE RVLA I G+    +
Sbjct: 636 --------------VRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQE 681

Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           AF  GEDI+ TT  + F     D V+ E R   K +                    G+  
Sbjct: 682 AFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNF--------------GIVYGISD 727

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              + N                                +         + +  ++ GV +
Sbjct: 728 YGLANN------------------------------TGISRKQAHQFIQRYFEEYPGVKK 757

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +D+ E                                       RR    D+      
Sbjct: 758 YTEDIVEFAKNHGYVETIAH--------------------------RRRYLPDIHSRNFN 791

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635
           L +      R            +Q  + DI+   M N  +        ++L VHDE++ E
Sbjct: 792 LRSFA---ERTAM------NTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFE 842

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+    +V  L   +M         +PLK E +  K +
Sbjct: 843 VPNDEMETVEKLIPKVMDSAIK--LNIPLKVESHWGKTW 879


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 180/662 (27%), Gaps = 141/662 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A  D      D  E       +L Q+L D       H++           G+++   
Sbjct: 366 LAIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAKPAWHALTG-RGLEVRGV 424

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYD 146
             + T++ A           L +  +     E         G+ ++         S    
Sbjct: 425 -VMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDADSGAKSAGAR 483

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              A    A  L  E   R  +A  E         D E  L      +   G   D++ +
Sbjct: 484 AV-AVVELAGPLAEEVADRGAQALLE---------DVELPLLRTLAEMEHDGIGADVEYL 533

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKS 263
             ++       ++      +   G   +      L+  LF   G+           T   
Sbjct: 534 RGIEREFDAVVERAALGAYEAI-GRQVNLGSPKQLQEVLFDDLGMPKTRRTKTGYTTDAD 592

Query: 264 ILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L+           + L+ +R A        +  L  +V+ DGR+  T Q   A  TGR 
Sbjct: 593 ALADLYVKTEHPFLEHLLAHREAIRLRQT--VEGLLRSVAPDGRIHTTFQQTIA-ATGRL 649

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                                +R   +   G   L+ A
Sbjct: 650 SSADPNLQNIP------------------------IRTEEGYRIREGFVVGEGYETLLTA 685

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF +GED++    ++ F  P D+V+   R+  K M   L
Sbjct: 686 DYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIKAMSYGL 745

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L +                                        
Sbjct: 746 AYG-----LSAFGLSKQLSIDVA------------------------------------- 763

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                 +   +  +  GV      +      V      +                     
Sbjct: 764 --EARTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLM--------------------- 800

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+  D         ++              +Q  + D++   M    +
Sbjct: 801 -----GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADLIKVAMLGVHR 846

Query: 620 ------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE+V E       ++  L    M         +PL       + 
Sbjct: 847 QMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAAE--LSVPLDVSVGTGRS 904

Query: 673 YR 674
           +R
Sbjct: 905 WR 906


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 113/660 (17%), Positives = 204/660 (30%), Gaps = 134/660 (20%)

Query: 33  CAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A+A  D      D T    A    L  +L D  +  + H+         +  G      
Sbjct: 363 VAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLKVPLHAV-RARGWTFGGL 421

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T++ A           L +  L     E  ++  +G   ++    G  D       
Sbjct: 422 NM-DTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLD-GGADELEQKEI 479

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A  V+A  +F        E   EL      L++ E  L  +   +   G  +D D + +
Sbjct: 480 SAELVKARAIFELAGALAAELE-ELGGA-KLLAELELPLLEVITELEAAGIAVDTDQLTE 537

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TL 261
           L+        +  E   ++  G   +      L++ LF   G+     ++         L
Sbjct: 538 LEAHYLSRVTQAAESAYEVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAL 596

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
           +S+   +    L    +L    ++      +  L ++V+ DGR+  TLQ   A  TGR S
Sbjct: 597 QSLFEKTEHPFLQH--LLEHRDATRLRTT-VEGLIKSVADDGRIHTTLQQTIA-ATGRLS 652

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380
                 QN+P                                +R   +  +G  +L+ AD
Sbjct: 653 SIEPNLQNIP------------------------VRTEEGRRIRDAFVVGDGYAELMTAD 688

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ ++  I+AF +GED++    ++AF+ P  +++ EQR   K M   L 
Sbjct: 689 YSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSYGL- 747

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          GL                                   + + K+  
Sbjct: 748 -------------AYGLS------------------------------AYGLSQQLKIST 764

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +   +A+ ++  GV    + +    A                               
Sbjct: 765 EDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIF---------------------- 802

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619
                RR    D+  D         ++              +Q  + DI+   M N  + 
Sbjct: 803 ----GRRRYLPDLNSDNRQRREMAERM---------ALNAPIQGSAADIIKVAMLNVHRA 849

Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE+V E  D     V  L    M      A  +PL+      + +
Sbjct: 850 LAEAGARSRVLLQVHDELVLEIADGERSDVEKLVREGMGSAAELA--VPLEVSVGYGRSW 907


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 89/654 (13%), Positives = 190/654 (29%), Gaps = 126/654 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIP 89
            A A+  E        E +       Q+L DET+       +F+     +F    G+ + 
Sbjct: 339 LAVAFGTEKQVYVTSIESAVQSEAFKQWLADETIEKT----MFDTKAMKVFANRFGLTVA 394

Query: 90  SKRWICTSVLARTNGLPSSLK---NACLALNFSEHLT-KMEEGKALIARFCKGSIDSPPY 145
              +   S+LA        +    +       S   T +   GK +  +  +       +
Sbjct: 395 GATY-DVSLLAYLVDANEIVNEIYDVAKRFGISLLKTDEEVYGKGVKIKVPEEKEVFWNH 453

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              +   + A        + D     +L+       + E  L  +   +  +G R+D + 
Sbjct: 454 LAAKIYVL-ATAPKRLLKQLDENEQAQLYW------EMELPLSDILARMEIQGIRVDQNR 506

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           ++++     +  K++++ I +L      +      L + LF    + ++  ++    T  
Sbjct: 507 LIEMGLQFEERLKEIEQTIYELAGEEF-NINSPKQLGVILFEKMNLPVIKKTKTGYSTAV 565

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L          + IL     +      +  L   +   G++         ++TGR S 
Sbjct: 566 DVLEKLASQSPIVECILEYRQLAKLNSTYVEGLQTYIDEKGKIHTRFVQN-LTQTGRLSS 624

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                VRS  +      KL+ +D 
Sbjct: 625 QDPNLQNIP------------------------IRTEEGRQVRSAFLPSHPEWKLLSSDY 660

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALG 440
           + IE RVLA +A +   I+AF N  DI+  T  + F     ++V+   R   K +   + 
Sbjct: 661 SQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNPEEVTSSMRRQAKAVNFGIV 720

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               L++ +           E+++  + +   +  +  +    + L  
Sbjct: 721 YG-----ISDYGLSQNLNIPRKKAKEFIDRYLEEFQGVKDYMETIVAEARQNDYVETLFH 775

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                     R     +     ++                                    
Sbjct: 776 R---------RRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADI---------------- 810

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                 ++   ++  + +  N                     QA         +      
Sbjct: 811 -----LKVAMIELDRELTERNF--------------------QA------KL-LLQVHD- 837

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                     E++ E P+    S+ +L   +M    S    +PLKA+      +
Sbjct: 838 ----------ELIFEVPEEEVESLQSLVEEVMENAVS--LSVPLKADSNIGNNW 879


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 130/352 (36%), Positives = 192/352 (54%), Gaps = 5/352 (1%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L+ D+ET    P+   G  AYAE   + L A+A +D PV +WD T    +P  L + +
Sbjct: 4   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62

Query: 62  RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
                +   HNS F+R + +  +  +  P +RW  T V A  +GLP SL   C  L   +
Sbjct: 63  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 122

Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              K +EGKALI  FCK    +S     T   H + W+ F  Y   D+EA RE++ RL  
Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPK 182

Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            +    E  LW  DQ INDRG  +D+ L     E + QE+K+L +   ++TDG ++++ Q
Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
             AL  ++    G++L DM   TL+  ++  ++    K+++  RL +S ++  K   L +
Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKEMLAIRLQASTTSTSKYKALMK 302

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR    +E + + I+A N 
Sbjct: 303 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNA 354


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/658 (13%), Positives = 165/658 (25%), Gaps = 135/658 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL---FKKTL 84
           A +   A A+ D+ V      +       LL YL  E    V     ++           
Sbjct: 362 ADVHGLALAYQDQAV-YIPIEDVRQ-DEALLAYLAGEKTKIV-----YDVKACLHLADGA 414

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLK-NACLALNF-SEHLTKMEEGKALIARFCKGSIDS 142
           G+ I   +     + A       +                     GK    +  +  +  
Sbjct: 415 GLTINGMKI-DAMIAAFLCDSTLTSDQKIREKFGLTETVTMDEVYGKPGKMKLPEPQLQR 473

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                        W+      K       E+        D E  L  +   +   G RID
Sbjct: 474 QLCAQKIQLIDALWKDSEPKLK-----EMEIVSLFY---DVEMPLAAVLYKMEKEGIRID 525

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
              +  +          L + I     G   +      L   LF   G+        T  
Sbjct: 526 SQTLDDIARQTQARLDALTDAIYAAA-GETFNINSPKQLGEVLFDKLGLPASGKKRSTSA 584

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            +L               L + +  DGR+        A++TGR S 
Sbjct: 585 DVLEKLLGVHPIIADLLEFRKYQKLYSTYAEGLKKYIHPDGRIHTIYNQC-ATQTGRLSS 643

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+                              S  VR   + S G  LV +D +
Sbjct: 644 TEPNLQNI------------------------SVRDEESREVRKAFLPSEGNVLVASDYS 679

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A E   + AF +  DI+  T +  F  P+D+V  + R   K +   +   
Sbjct: 680 QIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAVNFGIV-- 737

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     SQ +                               +    
Sbjct: 738 ------------YGISDFGLSQQLD------------------------------ISRAQ 755

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +   + +   +  + +    +             +                        
Sbjct: 756 AKEFIERYLQSYPNISKYMDQVISFCQEHGYTATML------------------------ 791

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    ++            +               +Q  + D++   M    K   
Sbjct: 792 --GRRREVPEIHDKNYMTREFGKRA---------AMNAPIQGSAADLIKLAMIRIDKAIS 840

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ +   +   ++  +    M         +PL AE      +
Sbjct: 841 EKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAME--LKVPLVAETKIGDTW 896


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/506 (16%), Positives = 143/506 (28%), Gaps = 104/506 (20%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G  ID+  + KL + +    + ++  + +L+     +      L
Sbjct: 4   EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELS-EENFNLSSPKQL 62

Query: 242 RMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
              LF    +D            T   +L            ++     +      ++ L 
Sbjct: 63  GEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTYIDALP 122

Query: 297 EAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             ++   GR+        A+ TGR S      QN+P                        
Sbjct: 123 NLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP------------------------ 157

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                S  +R   +     KL+ AD + IE R+LA +A E+  I AF   +DI+  T   
Sbjct: 158 VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSLTAKL 217

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    + +S ++R +GK +   + Y  G    K  A   G+ +             E +
Sbjct: 218 IF--EKEVISSDERRVGKTINFGVIYGMG---IKKFARSTGVSIP--EAKEFLIKYKERY 270

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +        +           + G   E                               
Sbjct: 271 SKIFKFLELQERLALSKGYVKTIFGRKREFKFDK-------------------------- 304

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                        L     K    I L S+RR                 +Q +R      
Sbjct: 305 -----------NGLGRLIGKDPYEIDLQSARRA-------------GMEAQSLRAAANAP 340

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF-SVGTLC 648
                 +Q  S DI+   M    K          ++L VHDE++ E        +   + 
Sbjct: 341 ------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVK 394

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYR 674
             M         +PL  +      + 
Sbjct: 395 KTMEDCVK--LNVPLLVDIGIGDNWM 418


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/590 (15%), Positives = 168/590 (28%), Gaps = 119/590 (20%)

Query: 90   SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                    + A       +        +  +   +            +      P D   
Sbjct: 586  PAPVTDLKLAAYLLDPVRN------RYHLVDTARQF------FGWDLEEGPADRPGDPAV 633

Query: 150  ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVL 207
                   +      +       EL  R +     + E  L  +   + + G  +D   + 
Sbjct: 634  CTSSLLGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLE 693

Query: 208  KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
            +L  L  +  ++L E I +L      +   T  L   LF   G+ +V  ++    T   +
Sbjct: 694  ELGRLFTRRSQELAEQIYELAGQTF-NINSTQQLGQILFERLGLPVVKKTKTGYSTDAEV 752

Query: 265  LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            L          +L+L   +        ++ L+E +  DGR+  T Q   A  TGR S   
Sbjct: 753  LETLAARHPIAELVLEYRSLVKLQGTYVDGLAEHIGPDGRIHTTFQQTVA-ATGRLSSTQ 811

Query: 325  FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
               QN+P                                +R   +A  G +LV AD + I
Sbjct: 812  PNLQNIP------------------------IRDEPGRSLRRAFVAPPGHRLVAADYSQI 847

Query: 385  EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            E RVLA  +G+   ++AFA G+D++  T ++ F  P+++V+ EQR + K +   L Y   
Sbjct: 848  ELRVLAHYSGDPGLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQT 907

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                        L + +          FE +   + +      +  +      L+G    
Sbjct: 908  -----DFGLARALRIDRADARRFMERYFERYPGVKRYMEETVRRARQQGEVTTLLGRRRP 962

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +           +      + +    V                                 
Sbjct: 963  V---------PEIRHRVFHIRQNAERVAINTPIQGTAADI-------------------- 993

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
              +L    V    +                                             I
Sbjct: 994  -MKLAMIRVHRALAEEGLRAR--------------------------------------I 1014

Query: 625  VLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VL VHDE++ E PD    +V  L    M     +   +PL  E      +
Sbjct: 1015 VLQVHDELLVEAPDAEVAAVAALLRREMEGA--FRLDVPLVVEVKSGANW 1062


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/634 (13%), Positives = 172/634 (27%), Gaps = 129/634 (20%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKN 111
             +   L DE +  + ++   E +       I +   ++    +             +  
Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSLL-PYDISLRGIKY-DLKIAKYLLSPDNNSYDISE 417

Query: 112 ACLALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             +    S     +   GK    +           +            +        ++ 
Sbjct: 418 IAMEYGLSHLQSHEEFFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTAIRDSE 477

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                +L    D E  L  +   +   G  ID   +   +   AQ   +L+ +I +L   
Sbjct: 478 M---TKLFE--DVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELAGE 532

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L + LF    +  V  ++    T  ++L   +        I++    +  
Sbjct: 533 EF-NINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIISYRQYTKL 591

Query: 288 AILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               +  L   ++ +  R+  +     A  TGR S      QN+P               
Sbjct: 592 QSTYVEGLLNIINPNTERIHSSFNQTIA-ATGRISSTEPNLQNIP--------------- 635

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   IA  G  LV +D + IE RVLA I+ E+  I+AF+   
Sbjct: 636 ---------VRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQAFSKDA 686

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T ++ F   I +V+KEQR   K +   + Y                         
Sbjct: 687 DIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDFGLSNN--------------- 731

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +         K +  +++ + +  +D+  
Sbjct: 732 -----------------------------LGITKKKAGQYIKTYLDRYKNIEKYMQDVVA 762

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                      +                           RR     +K     +     +
Sbjct: 763 FGEEHGYVTTIL--------------------------GRRRSIPQLKQKNIMIKNLGKR 796

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP 640
           L              +Q  + DI+   M               ++L VHDE++ E     
Sbjct: 797 L---------AMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDELIIEATADE 847

Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   L   M+K       + LK +      +
Sbjct: 848 QDYIKALLQEEMSKAYD--MKVELKVDINVGNSW 879


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 188/663 (28%), Gaps = 140/663 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82
            Y +  +I   A+  +   V L    E +   + L  +  D ++    H+S     ++  
Sbjct: 331 RYTDDGLIDGIAFTREYG-VTLARAGETAGFDAFLAAFFADGSITKRTHDSK---PVYAA 386

Query: 83  TL--GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            L  G  +       T +L               +   +    +                
Sbjct: 387 ALRQGFTVSDAEPDDTMLLGYLLNP------LASSYAPARLCEE---------YTVFPPA 431

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                D        A  +         + T    ++L    + E  L  +   +   G+ 
Sbjct: 432 TENVPDGFSGCVDTALAVRALAPVLLRKLTENGQEKLYR--EVELPLARVLAQMEHAGFL 489

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D   +    E + ++   ++++IV        +      L   LF+  G+     ++  
Sbjct: 490 VDAAGIAAYGETLGKKLAAIEQEIVDAVGYPF-NLNSPKQLGEALFVKLGLPHGKKTKTG 548

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L        A D +L     S       + L + ++ DGR+  +      +RT
Sbjct: 549 WSTSADVLDKLRGAHPAIDALLGYRKLSKLKSTYTDGLLKVIAPDGRIHSSFNQ-VETRT 607

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   +A  G  LV
Sbjct: 608 GRISSTEPNLQNIP------------------------VRSAEGRELRRFFVARPGWVLV 643

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA IA +   I AF N EDI+  T ++ F  P + V+   R+  K +  
Sbjct: 644 DADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVFGMPPEYVTPIMRSRAKAVNF 703

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            +                G+                                   +    
Sbjct: 704 GIV--------------YGIG------------------------------AFSLSQDIG 719

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   K +  K  GV    + +                                 
Sbjct: 720 VSVKEADSYIKGYLQKFSGVRDYMERVIREAHEKGY------------------------ 755

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             +     RR V  ++      +     ++ R            +Q  + DI+   M   
Sbjct: 756 --VETLFGRRRVLPELLSSNHNMRAFGERVAR---------NTPIQGTAADIIKIAMVRV 804

Query: 618 TKNGYD------IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEA 670
                       ++L VHDE++ E P+      G +    M    S    + L+A+ +  
Sbjct: 805 RDRLEREQMQSALILQVHDELIVEAPEDEAARAGQILEEEMEGAAS--LRVRLEADVHTG 862

Query: 671 KRY 673
             +
Sbjct: 863 HTW 865


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 185/654 (28%), Gaps = 126/654 (19%)

Query: 33  CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              AW +        +     + P   + +L DET     +++    +   + +G  +  
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394

Query: 91  KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146
             +    + A         + ++       +      +   GK       +       + 
Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   +Q         K D E T +    L      E  L  +   +   G R+D   +
Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            ++Q   ++  K+++E I         +      L + LF   G+ ++  ++    T   
Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L            IL     +      +  L + +  D ++         ++TGR S  
Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382
               QN+P                                +R   +       +  +D +
Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441
            IE RVLA I+ ++   +AF  G+DI+ +T  + F     + V+   R   K +   + Y
Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 720

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L + +        + FE +   + +   +     +    + L   
Sbjct: 721 G-----ISDYGLSQNLGITREQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    R     +     +L        +      SA  +  +  + M         
Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEM--------- 817

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                                              +L E  +QA         M      
Sbjct: 818 ---------------------------------AHRLKEEKLQAT--------ML----- 831

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                L VHDE+V E P++    +  L   +M    S    +PL  +    K +
Sbjct: 832 -----LQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/671 (13%), Positives = 172/671 (25%), Gaps = 146/671 (21%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
           K+   + A    I    + + +E        E   + +++   L  + V  +  ++    
Sbjct: 331 KLETGSKAISGKIDKILFYFKNETKMYIYHPEAK-IAAEIKFILESKKVKKLMPDAK--L 387

Query: 78  ILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
                    + +    +    +        SSL      L+                   
Sbjct: 388 AFLSLLKNEVKVAGISFE-PLLAFYLLQPSSSLPELEEVLSHE----------------- 429

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTIN 195
                S  +         A +    +       T  +    L    + E  L  +   + 
Sbjct: 430 ----LSLSFTELETEQKLAVKTSKLFELETKLITKLKENNLLNLYQEIELPLIKVLAQME 485

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G ++D D +  L E + +    + +   KL      +      L   LF   G+    
Sbjct: 486 LNGVKVDKDWLANLSEKLGKRLAIITDKAHKLAGEEF-NLNSPKQLGEILFEKLGLPVIK 544

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQF 311
                  T  S+L           LI      +      +++L   ++    ++  +   
Sbjct: 545 RTKTGYSTNASVLEKLEGKHEIIPLISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQ 604

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370
              + TGR S      QN+P                                +R   I  
Sbjct: 605 MV-TATGRLSSTEPNLQNIP------------------------IRTEEGREIRKAFIPS 639

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            +   L+  D + IE RV A ++G+    +AF N  DI+  T A+ F    + V+ + R 
Sbjct: 640 RSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRR 699

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             KV+                    G+                                 
Sbjct: 700 HAKVIN--------------FGIAYGMS------------------------------AY 715

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             +    +     +     +  +  GV +  +   E    +                   
Sbjct: 716 GLSQDLDIPVEEAQTYIDKYFERFSGVKKYMEQTIEKVKKLGYAETMF------------ 763

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR    ++           S   R            VQ  + DI+
Sbjct: 764 --------------GRRRYIPEINSSN---YHRRSFAERTAI------NTPVQGTAADIM 800

Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663
            + M +        +   +I+L VHDE+V E            +   M         +PL
Sbjct: 801 KKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMENTTK--LDVPL 858

Query: 664 KAEGYEAKRYR 674
             +    + +R
Sbjct: 859 IVDLQIGENWR 869


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/650 (13%), Positives = 189/650 (29%), Gaps = 157/650 (24%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D E VK +           L     +E +  V H+S    ++  K   I   +  +  T 
Sbjct: 368 DKEEVKYF---------EILKNLFENEKIKKVCHDSKKVYVVLNKH-NITAKNIAF-DTK 416

Query: 98  VLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + A       S   LK+    +            K     + K   +    D   +N  +
Sbjct: 417 IAAYLLQPSKSDYMLKDLIEEMLLLSLKEYDNI-KINETYYIKDIYEKLEKDIKESNMEE 475

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                                        E  L  +  ++   G+R+D + + ++ E   
Sbjct: 476 LLYTV------------------------ELPLVEVLASMECAGFRVDENRLTEIGEKFK 511

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271
           +E + L+++I +L D    + +    L   LF    + ++  ++    T   +L      
Sbjct: 512 KEIETLEKEIHELADEEF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDK 570

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               + I+     +      +  L   +  DG++  +      + TGR S      QN+P
Sbjct: 571 HPIIEKIIEYRQITKLDSTYVEGLKNVIDGDGKIHSSFNQTV-TTTGRLSSTEPNLQNIP 629

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
                                           +R   + +N +  +  AD + IE R+L+
Sbjct: 630 ------------------------IKHEMGREIRKVFVPNNNESVIFSADYSQIELRILS 665

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IA ++  I AF + +DI+  T ++ F  PID+V+   R+  K +   +           
Sbjct: 666 HIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV---------- 715

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                   +    +     +     +
Sbjct: 716 ----YGIG------------------------------AFSLSKDINVSRKEAKEYIDTY 741

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            +++  V +   ++                                D  +    +R+   
Sbjct: 742 FSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNRKRYI 775

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624
            +++     +     +L              +Q  + DI+   M               +
Sbjct: 776 PEIQSRNKIVRGFGERL---------AMNTPIQGSAADIIKLAMVEVYNELKNRNLKSTL 826

Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE++          V   +   M         +PL+A+    + +
Sbjct: 827 ILQVHDELILNVYKDELEEVKNMVVDKMENVMKLL--VPLEADVNAGETW 874


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 328 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 381

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A        + +   A        +       +  + KG+  +
Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRSDEAV--YGKGAKRA 436

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          +R         ++   L + E+ L  +   +   G ++D
Sbjct: 437 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 496

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++ E +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 497 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPILKKTKTGYS 555

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D +   T+     ++TGR
Sbjct: 556 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 615

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378
            S      QN+P                                +R   + S     +  
Sbjct: 616 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 651

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +D  ++AF    DI+  T    F    D+V+   R   K +   
Sbjct: 652 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 710

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     +QN                                +
Sbjct: 711 -------------GIVYGISDYGLAQN------------------------------LNI 727

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    + +     GV +  +++ +           +                    
Sbjct: 728 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 768

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    D+      + +   ++              +Q  + DI+ + M +  
Sbjct: 769 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 812

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                 +    ++L VHDE++ E P      +  L   +M +  +    +PLK + +   
Sbjct: 813 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGP 870

Query: 672 RY 673
            +
Sbjct: 871 TW 872


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 216/458 (47%), Gaps = 38/458 (8%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M    +LF+D ET S   L KVG +AYAE     I +C YA D+  V+ WD TE   MP 
Sbjct: 1   MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPR 60

Query: 56  DLLQYLRDETVMC---VAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
           +L + LR  +      V  N  LF+R++ ++  GID+P  +   T ++A  + LP SL  
Sbjct: 61  ELRKALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDM 120

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            C  L       K + GKALI RFCK +  +      TR  H + W  F  Y   D+ A 
Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180

Query: 171 RELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           RE++ R+     +  E ++ L+DQ INDRG+ +D+DL     + +   +++L E+  +  
Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERF 240

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
            G +  +     LR          + +  + TL  +L   +     K LI  RL +S +A
Sbjct: 241 GGKLTGNDFLPILRDIA---PAFTIHNAQKSTLNDLLEDPDFPDEGKALIEMRLGASSTA 297

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             K N L   +S+DGR RG LQ+ GA RT RW+G  FQPQNL R E S++   +  +   
Sbjct: 298 STKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREG 357

Query: 349 RGETIADPLGLA-----------------------SDCVRSCIIASNGKKLVVADLAGIE 385
             +                                +  VR CII + GKK VVAD + +E
Sbjct: 358 ESDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVE 417

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R LAW+AGE   +  F  G DIY  T  K F    D 
Sbjct: 418 GRGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDY 455



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 118/297 (39%), Gaps = 53/297 (17%)

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                EL LGY GG   F   A + GLDL   +  +K T     W  A+  + + +    +
Sbjct: 766  AHNCELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAK 825

Query: 492  FAVKDKLIGTA------------CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--- 536
               K                   C+ +K+ WR  H   +  W +L +   C ++  G   
Sbjct: 826  RPPKPGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAY 885

Query: 537  ------------SISARRVANVPRLVMRRH-------KRDVHIVLPSSRRLVYSDV---- 573
                        ++   R                      + I LPS R + Y  +    
Sbjct: 886  WAGANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSV 945

Query: 574  ---------------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                           +      N  T Q   + TYGGKLTENIVQA+ RDIL   M    
Sbjct: 946  TTEIDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVE 1005

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              GY+IVL+VHDE+++E PDT  ++   LC+LM   P WAKG PL AEG    RYRK
Sbjct: 1006 AAGYEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 192/672 (28%), Gaps = 144/672 (21%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D T         L  +L D       H +          
Sbjct: 365 AYDADATALAIVAADGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEAK-----LAMH 419

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL +  L     E              
Sbjct: 420 ---DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPA---QQQL 473

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L  L   E  +  +   +
Sbjct: 474 SLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVLAEM 531

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  +D+D + +LQ   A   +    +      G   +      L+  LF    +   
Sbjct: 532 EHTGIAVDIDQLRQLQSEFADLIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELEMPKT 590

Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
             ++    T    L              +L    ++   +  ++ L  +V+SDGR+  T 
Sbjct: 591 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 649

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                            A   +R   +
Sbjct: 650 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 684

Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
             +G   ++ AD + IE R++A ++ +   I+AF  GED++    ++AF+ PID+V+ + 
Sbjct: 685 VGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDL 744

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K M   L                GL     +  +K                     
Sbjct: 745 RRRVKAMSYGL--------------AYGLSAYGLAAQLK--------------------- 769

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    +     ++    + A+  G+    +D+ +                      
Sbjct: 770 ---------ISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVF---------- 810

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    ++      +  A  +               +Q  + D
Sbjct: 811 ----------------GRRRYLPELDSSNRNVREAAERA---------ALNAPIQGSAAD 845

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           I+   M +  +          ++L VHDE++ E  D    ++  L    M     +A  +
Sbjct: 846 IIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSA--YALDV 903

Query: 662 PLKAEGYEAKRY 673
           PL+      + +
Sbjct: 904 PLEVSVGYGRSW 915


>gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 908

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/668 (12%), Positives = 179/668 (26%), Gaps = 139/668 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERIL 79
            I   +   ++     +                           + +  + H+   ER +
Sbjct: 351 RIVGISLCVEN-KAFYFPIGHNDLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNI 409

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
           +    G+ + +  +    + +          + +                 K        
Sbjct: 410 YSM-SGVGLNNI-YFDIMLASYCLNPAKSHCITDMSKEYLDFTAGVGSYAWKGSKK---S 464

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S      +  +  +  +F  Y   D +   +    L    D E  L  +   +   
Sbjct: 465 SFANSSIEAGAKYANSISAAVFAIYKIFDFQIKEKKLSLLF--FDTEMSLVEILSEMEIS 522

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++DL  +    E I  E K ++ +I K+      +      L   +F    + ++  +
Sbjct: 523 GIKVDLPFLRNFNEKIVYELKIIENNIYKIAGIEF-NINSQKQLSSVMFEKLNLPVIKKT 581

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYG 313
           +    T + +L   +  +   + IL            ++ L++     G R+        
Sbjct: 582 KTGYSTDEEVLVELSSHEFPAE-ILKYRELQKLKSTYIDPLTDYCVYYGSRIHTIFNQAV 640

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            + TGR S      QN+P                                 R   +    
Sbjct: 641 -TTTGRLSSTEPNLQNIP------------------------VKSAYGKEFRKAFVPERN 675

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAIG 432
           K  + AD + I+ RVLA I+ +   I+AF  G DI+  T  + FN P     +   R+  
Sbjct: 676 KIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLTDSLRSAA 735

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               L++                                 
Sbjct: 736 KSINFGIIYGMSP-----FGLSKQLNIPFG------------------------------ 760

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                      +     +  ++  V    + + +  +                       
Sbjct: 761 ---------KAKEYIDGYFERYDKVKFWMEQIVKQASEDGYVRTIT-------------- 797

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R     +++   +          R            VQ  S DI+  
Sbjct: 798 ------------GRIRYIPELRSTNA---QVRKAGERMA------LNTPVQGSSADIIKI 836

Query: 613 GMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKA 665
            M +        GY   ++L VHD+++ E PD    ++   + + M         +P+  
Sbjct: 837 AMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENPLH--LSIPIVV 894

Query: 666 EGYEAKRY 673
           +    + +
Sbjct: 895 DIKAGRNW 902


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/652 (14%), Positives = 179/652 (27%), Gaps = 146/652 (22%)

Query: 38  DDEPVKLWDRTE-----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           ++    + D  +            L   + D+ V  V H+         K   I+I    
Sbjct: 342 EENKGTIIDFKDISSKDSEEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQ-IEIKGFD 400

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +  T++ A       S       +N          G    +           Y       
Sbjct: 401 F-DTAIAAYLIDSSKSKYEILELVNH-------YIGDNPNSEGSNIKAILCSYLPMVYE- 451

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                          E   +L+       + E  L  +  ++   G+ I+  ++ +LQ  
Sbjct: 452 -------KLKENLHKENMDQLYY------EVEHPLIYVLSSMESIGFNINQGMLDELQTK 498

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
             +E  K  ++I +L D    +      L   LF    + ++  ++    T + +L    
Sbjct: 499 FKKEIDKTQKEIYELADEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLM 557

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   I+     +      +  L   V  DGR+         + TGR S      QN
Sbjct: 558 NKHDIIPKIMYYRQITKINSTYVEGLKNVVDEDGRIHSNFNQTV-TTTGRLSSTEPNLQN 616

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388
           +P                                +R   I       LV  D + IE RV
Sbjct: 617 IP------------------------IKYEMGREIRKVFIPMEETDILVSCDYSQIELRV 652

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA IAG++  I AF +  DI+  T ++ F  PI +V+   R+  K +   +         
Sbjct: 653 LAHIAGDENMIDAFEHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIV-------- 704

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+                                   A   K+     E    
Sbjct: 705 ------YGIS------------------------------AFSLAEDLKITKKEAEEYMS 728

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            +  ++  + +  +++ +           ++ RR     +   +       IV     RL
Sbjct: 729 IYLERYPKIKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNK-------IVKALGDRL 781

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
                                            +Q  + DI+   M N            
Sbjct: 782 AM----------------------------NAPIQGSAADIIKLAMVNVYNKLNEKELKS 813

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +++L VHDE++       +  V  L +  M         + L  +      +
Sbjct: 814 ELILQVHDELILNVKKDEFEEVKNLVAYEMENAIK--LKVALDVDVNFGDTW 863


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/606 (15%), Positives = 162/606 (26%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+         +LA      ++  +                        
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  K L    + E+ L  +   +
Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249
              G R D+  +  L   +A+E ++L+E++ +L      +      L   LF        
Sbjct: 447 EATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
           G         T  ++L          + IL     +      ++ L   V    GRL   
Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                         +R 
Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                M           L VHDE++ E P      V  L    M K    A  +PL+ E 
Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823

Query: 668 YEAKRY 673
              + +
Sbjct: 824 GMGEDW 829


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/606 (15%), Positives = 162/606 (26%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+         +LA      ++  +                        
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  K L    + E+ L  +   +
Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249
              G R D+  +  L   +A+E ++L+E++ +L      +      L   LF        
Sbjct: 447 EATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
           G         T  ++L          + IL     +      ++ L   V    GRL   
Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                         +R 
Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                M           L VHDE++ E P      V  L    M K    A  +PL+ E 
Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823

Query: 668 YEAKRY 673
              + +
Sbjct: 824 GMGEDW 829


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A        + +   A        +       +  + KG+  +
Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRSDEAV--YGKGAKRA 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          +R         ++   L + E+ L  +   +   G ++D
Sbjct: 439 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++ E +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D +   T+     ++TGR
Sbjct: 558 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 617

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378
            S      QN+P                                +R   + S     +  
Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 653

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +D  ++AF    DI+  T    F    D+V+   R   K +   
Sbjct: 654 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 712

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     +QN                                +
Sbjct: 713 -------------GIVYGISDYGLAQN------------------------------LNI 729

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    + +     GV +  +++ +           +                    
Sbjct: 730 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 770

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    D+      + +   ++              +Q  + DI+ + M +  
Sbjct: 771 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 814

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                 +    ++L VHDE++ E P      +  L   +M +  +    +PLK + +   
Sbjct: 815 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGS 872

Query: 672 RY 673
            +
Sbjct: 873 TW 874


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 113/675 (16%), Positives = 194/675 (28%), Gaps = 150/675 (22%)

Query: 15  PLPKVGVWAYAEQAVITLCA----YAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCV 69
           PL   G +  A +  +             E      D T      +DL++ L +  V   
Sbjct: 320 PLTPSGTYLVASRPAVMGKQGTRNVVLQPESWYAVQDCTVYPLEDADLVRLLDNADVTLE 379

Query: 70  AHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
             N+     L+ K +         +    + A      +S                    
Sbjct: 380 VFNA---APLYAKAMAAGGWGSSIVWDGKLAAYLLDASAS-------------------- 416

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           K  I+        +  +  T A++  A +L   +CK   E T      L    + E  L 
Sbjct: 417 KYQISELTASYRAAAAF--TCADYPDAGRLADLFCKMKAEITACGEDSLYN--EIEFPLA 472

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +   +   G  +D D + +    +  E +++   I   T     +      L   LF  
Sbjct: 473 QVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHMETGSASFNPNSPKQLGEMLFDT 532

Query: 249 TGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
            G+     +     T    L       L +D IL   A        +  L + +  DGR+
Sbjct: 533 MGLPHGKKTQRGWSTDAETLESLRDYPLVED-ILQYRAYQKLNSTYVEGLLKVIGEDGRI 591

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T     A RTGR S      QN+P                                +R
Sbjct: 592 HSTFNQTEA-RTGRLSSDNPNLQNIP------------------------IRTELGSQLR 626

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           +  IA  G  LV AD + IE R+LA I G++   +AF NGEDI+ +T AK +  P ++V+
Sbjct: 627 AYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVT 686

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              R+                                              +A +  +  
Sbjct: 687 SRLRSSA--------------------------------------------KAINFGIMY 702

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                  A    +     +   K + A    V                            
Sbjct: 703 GKGAYSLAKDIGVSVKEADAFLKNYLAAFPKVSGYMDKTIADAKACGY------------ 750

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                         +     RR    ++      + ++  ++ R            +Q  
Sbjct: 751 --------------VSTLFGRRRALPELASSNFNVRSSGERMAR---------NTPIQGT 787

Query: 606 SRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658
           + D++   M          K    ++LTVHDE++ E P         +    M     +A
Sbjct: 788 AADVIKLAMVRVWKRLRNEKMESRLILTVHDELIVEAPQAEAEKAAQILREEMEGCVQYA 847

Query: 659 KGLPLKAEGYEAKRY 673
             +PL  + +  K +
Sbjct: 848 --VPLSTDVHAGKNW 860


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/690 (13%), Positives = 187/690 (27%), Gaps = 154/690 (22%)

Query: 9   ETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63
           E  S         +G   + E     L   AW +        T   ++  +    + L  
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369

Query: 64  ETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL--N 117
              +       ++     +      ID+P   +  T +          +L +    L  N
Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN 421

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     GK            + P      +H+          + ++    ++ ++ 
Sbjct: 422 LPLDTDDAVYGKGAKR--------AIPEKTRFLDHLAKKVKVLVDSEANIMQQLKVNEQE 473

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             L + E+ L  +   +  RG ++  + + ++     +  + L ++I +L      +   
Sbjct: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF-NINS 532

Query: 238 TYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
              L   LF   G+             T   +L            IL     +      +
Sbjct: 533 PKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYI 592

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +  DG++         ++TGR S      QN+P                     
Sbjct: 593 IGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP--------------------- 630

Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R   + S     L+ +D + IE RVLA I+ ++  I AF  G DI+ +
Sbjct: 631 ---VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687

Query: 412 TYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           T  + F     + V+   R   K +   + Y               L             
Sbjct: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNL------------- 729

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                      +     +     +  ++ G+    + +      
Sbjct: 730 --------------------------GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKD 763

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                              RR    D+      +        R 
Sbjct: 764 KGYVETLFH--------------------------RRRSLPDINSRNFNIRQFA---ERT 794

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                    + +Q  + DIL   M N  +          ++L VHDEIV E P+    ++
Sbjct: 795 AI------NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848

Query: 645 GTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             L    M    S    +PL A+    + +
Sbjct: 849 KELVTKTMESAIS--LSVPLIADENAGETW 876


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 191/652 (29%), Gaps = 121/652 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
               W D+        E      D   + +D+       ++    +  K+   +DI S  
Sbjct: 342 FCIGWGDDQQIYVAEPEVVFASDDFKNWAKDKEAQKQVFDAKRTYVALKRQ-NVDIASID 400

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           +    + +       + K+            +  E  +  + + KG+  + P + T    
Sbjct: 401 F-DILLASYLLNTKDNSKDLSEV----ATEHEYYEVSSDESVYGKGAKIAIPEEKTIIYD 455

Query: 153 VQAWQLFG---EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             A ++        +      +    +L    + E  L ++   +   G +++   ++++
Sbjct: 456 HIARKIKAIRILSKQLGENLEKNEQTKLFN--EMELPLSMVLAEMELTGVKVNDKRLMEM 513

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
           +E  A     +++ + +L      +      L + LF   G  ++  ++    T   +L 
Sbjct: 514 KEEFAIRLTDIEQRVYELAGEKF-NLNSPKQLGVILFEKMGYPVIKKTKTGYSTAVDVLE 572

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
                    + IL+    +      +  L + +    G++        A +TGR S    
Sbjct: 573 QLREQAPIVEHILDYRQIAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIA-QTGRLSSVDP 631

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384
             QN+P                                +R   +    G ++  +D + I
Sbjct: 632 NLQNIP------------------------IRLEEGRKIRQAFVPSHEGWEIFASDYSQI 667

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQG 443
           E RVL  ++ +    +AF  G+DI+ +T  + F     ++VS E R   K +   + Y  
Sbjct: 668 ELRVLGHVSDDKLLKEAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNFGIVYG- 726

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +        + FE +   +++   +  +  +    + L     
Sbjct: 727 ----ISDYGLSQNLGISRKEAQHFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFQR-- 780

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                  R     +     +L        +      SA  +  +  + M +  ++     
Sbjct: 781 -------RRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDQKLKEST--- 830

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
                                                          +   M        
Sbjct: 831 -----------------------------------------------MKATML------- 836

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              L VHDE++ E P      +  L   +M         +PLK +    K +
Sbjct: 837 ---LQVHDELIFEAPKEEIEQLRALVVEVMEGAVE--LSVPLKVDSNSGKSW 883


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 92/639 (14%), Positives = 182/639 (28%), Gaps = 141/639 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVL-ARTNGLPSS 108
             +   L   TV     N  F+    +  +G     I + +  +    +L +      ++
Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFD--MLLVSYLLNTTNN 413

Query: 109 LKNA---CLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +         F+   T +   GK    +         P      +H+       +   
Sbjct: 414 SNDVGTVAKLHGFANIKTDEEVYGKGAKKKID-------PEVPEFFDHIVHKAKAIDQLH 466

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D+    +   +     D E  +  +   +   G +++ + + ++     +   ++++ I
Sbjct: 467 NDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTI 526

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +       +      L   LF    + ++  ++    T   +L            +LN 
Sbjct: 527 FQEAGEEF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNY 585

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              S      ++ L + +  +     T      ++TGR S      QN+P          
Sbjct: 586 RQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIP---------- 635

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I      ++  +D + IE RVLA I G+    +
Sbjct: 636 --------------VRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQE 681

Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           AF  GEDI+ TT  + F     D V+ E R   K +                    G+  
Sbjct: 682 AFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNF--------------GIVYGISD 727

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              + N                                +         + +  ++ GV +
Sbjct: 728 YGLANN------------------------------TGISRKQAHQFIQRYFEEYPGVKK 757

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +D+ E                                       RR    D+      
Sbjct: 758 YTEDIVEFAKNHGYVETIAH--------------------------RRRYLPDIHSRNFN 791

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635
           L +      R            +Q  + DI+   M N  +        ++L VHDE++ E
Sbjct: 792 LRSFA---ERTAM------NTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFE 842

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+    +V  L   +M         +PLK E +  K +
Sbjct: 843 VPNDEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 417 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 475

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 476 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 534

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 535 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 594

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 595 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 630

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 631 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 690

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 691 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 726

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 727 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 766

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 767 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 792

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 793 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVP 851

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 852 EVMEQAVT--LRVPLKVDYHYGSTW 874


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 97/674 (14%), Positives = 186/674 (27%), Gaps = 129/674 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
           +ET S                   L A AW           + +   S   ++L D  + 
Sbjct: 324 LETLSEN-----------YHFEPVL-AVAWTQGDQAYATSGKVAFASSAFRKWLEDGDLP 371

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
            ++ +   +  +     G+ +    +    + A    +     L +    L+    +   
Sbjct: 372 KISADLKRDS-ILLDHQGLTLAGVTF-DVGLAAYLVDVEKIKDLTSLATYLDLGIQVQLD 429

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
           E          KG   + P +   A H+       +     +    +         D E 
Sbjct: 430 EVVYG------KGVKQALPENERLAQHLADKVSLLDQAVAPLTQQLDDLGMTQLYQDMEF 483

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +  RG  +D+  + ++ +L+    ++L+ +I  L      +      L   L
Sbjct: 484 PLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQAF-NPNSPKQLGEIL 542

Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F   G+ ++  ++    T   +L            +L     +      L  L + + +D
Sbjct: 543 FERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGTYLAGLPKFIQAD 602

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 603 GKIHTRFVQT-LTQTGRLSSADPNLQNIP------------------------IRMEEGR 637

Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-P 420
            +R   +    G +L  AD + IE RVLA I+G+    +AF  G+DI+  T  + F    
Sbjct: 638 KIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGLAE 697

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+ + R   K +   + Y               LD+ +            ++    +
Sbjct: 698 DEAVNSDMRRQAKAVNFGIVYG-----ISDYGLSQNLDMPRKEAKAFIDRYLAEYPGIST 752

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
               +  Q  +      L G          R     +     +L                
Sbjct: 753 FMQEIVAQAKKDGYVSTLWGR---------RRALPDIYSSNFNLRSFAERTAMNTPIQGT 803

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                           +K     L+ A  Q              
Sbjct: 804 AADI----------------------------IKVAMVALDQAIRQ-------------- 821

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
                 RD+    +              HDE++ E P      +  L   +M    S   
Sbjct: 822 ------RDLQARLLLQV-----------HDELILEAPQEEIAILEELVPEVMEGAVS--L 862

Query: 660 GLPLKAEGYEAKRY 673
            +PLK E      +
Sbjct: 863 SVPLKVEAASGSNW 876


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A   L +  +           
Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWALERPFLDELRRNEQDRL 473

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ E +A++ + +++ I +L      +     
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPK 532

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 592

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 593 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 628

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 629 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 688

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 689 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 724

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 725 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 764

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 765 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 790

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 791 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVP 849

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 850 EVMEQAVT--LRVPLKVDYHYGSTW 872


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A   L +  +           
Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWALERPFLDELRRNEQDRL 473

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ E +A++   +++ I +L      +     
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELAGQEF-NINSPK 532

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 592

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 593 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 628

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 629 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 688

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 689 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 724

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 725 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 764

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 765 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 790

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 791 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVP 849

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 850 EVMEQAVT--LRVPLKVDYHYGSTW 872


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 330 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 383

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A        + +   A        +       +  + KG+  +
Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRPDEAV--YGKGAKRA 438

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          +R         ++   L + E+ L  +   +   G ++D
Sbjct: 439 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 498

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++ E +A++ + +++ I +L      +      L + LF    + ++  ++    
Sbjct: 499 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D +   T+     ++TGR
Sbjct: 558 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 617

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378
            S      QN+P                                +R   + S     +  
Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 653

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +D  ++AF    DI+  T    F    D+V+   R   K +   
Sbjct: 654 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 712

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     +QN                                +
Sbjct: 713 -------------GIVYGISDYGLAQN------------------------------LNI 729

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    + +     GV +  +++ +           +                    
Sbjct: 730 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 770

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    D+      + +   ++              +Q  + DI+ + M +  
Sbjct: 771 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 814

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                 +    ++L VHDE++ E P      +  L   +M +  +    +PLK + +   
Sbjct: 815 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGS 872

Query: 672 RY 673
            +
Sbjct: 873 TW 874


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/639 (14%), Positives = 182/639 (28%), Gaps = 141/639 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVL-ARTNGLPSS 108
             +   L   TV     N  F+    +  +G     I + +  +    +L +      ++
Sbjct: 362 KQVKAVLESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFD--MLLVSYLLNTTNN 413

Query: 109 LKNA---CLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +         F+   T +   GK    +         P      +H+       +   
Sbjct: 414 SNDVGTVAKLHGFANIKTDEEVYGKGAKKKID-------PEVPEFFDHIVHKAKAIDQLH 466

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D+    +   +     D E  +  +   +   G +++ + + ++     +   ++++ I
Sbjct: 467 NDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTI 526

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +       +      L   LF    + ++  ++    T   +L            +LN 
Sbjct: 527 FQEAGEEF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNY 585

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              S      ++ L + +  +     T      ++TGR S      QN+P          
Sbjct: 586 RQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIP---------- 635

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                 +R   I      ++  +D + IE RVLA I G+    +
Sbjct: 636 --------------VRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQE 681

Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           AF  GEDI+ TT  + F     D V+ E R   K +                    G+  
Sbjct: 682 AFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNF--------------GIVYGISD 727

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              + N                                +         + +  ++ GV +
Sbjct: 728 YGLANN------------------------------TGISRKQAHQFIQRYFEEYPGVKK 757

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +D+ E                                       RR    D+      
Sbjct: 758 YTEDIVEFAKNHGYVETIAH--------------------------RRRYLPDIHSRNFN 791

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635
           L +      R            +Q  + DI+   M N  +        ++L VHDE++ E
Sbjct: 792 LRSFA---ERTAM------NTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFE 842

Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+    +V  L   +M         +PLK E +  K +
Sbjct: 843 VPNDEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 97/665 (14%), Positives = 187/665 (28%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  D  L ++L   + + V     ++     +    
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQDPILKEFLEKTS-LKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           LG+++ +  +  + +         +        N                 + KG   + 
Sbjct: 395 LGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LADDETFYGKGVKKAI 448

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           P       H+ A ++        V         +L  L D E+ L  +   +   G ++ 
Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257
            + +L++Q       +KL ++I +L      +      L + LF   G+           
Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL+    +      +  L + +  DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYVQ-DLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +  +  G+     ++                               
Sbjct: 739 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      +        R          + +Q  + DIL   M 
Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
              K          ++L VHDEIV E P +   +V  L    M +       +PL A+  
Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAIQ--LSVPLIADEN 880

Query: 669 EAKRY 673
           E   +
Sbjct: 881 EGATW 885


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/697 (13%), Positives = 185/697 (26%), Gaps = 166/697 (23%)

Query: 8   IETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLR 62
            E  S         +G   + E     L   AW +        T   ++  +    + L 
Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368

Query: 63  DETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-- 116
               +       ++     +      ID+P   +  T +          +L +    L  
Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYT 420

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N          GK                        +  +   +  K  V++   + ++
Sbjct: 421 NLPLDTDDAVYGKGAKR--------------AIPEKTRFLEHLAKKVKVLVDSEANIMQQ 466

Query: 177 LIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           L          + E+ L  +   +  RG ++  + + ++     +  + L ++I +L   
Sbjct: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526

Query: 231 IIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              +      L   LF   G+             T   +L            IL     +
Sbjct: 527 EF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQIT 585

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L + +  DG++         ++TGR S      QN+P              
Sbjct: 586 KLQSTYIIGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP-------------- 630

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S     L+ +D + IE RVLA I+ ++  I AF  
Sbjct: 631 ----------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE 680

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G DI+ +T  + F     + V+   R   K +   + Y               L      
Sbjct: 681 GADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNL------ 729

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             +     +     +  ++ G+    + 
Sbjct: 730 ---------------------------------GIPRKLAKQYIDTYFERYPGIKNYMET 756

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +                                         RR    D+      +   
Sbjct: 757 VVREAKDKGYVETLFH--------------------------RRRSLPDINSRNFNIRQF 790

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
                R          + +Q  + DIL   M N  +          ++L VHDEIV E P
Sbjct: 791 A---ERTAI------NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841

Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    ++  L    M    S    +PL A+    + +
Sbjct: 842 NEEIGAIRELVTKTMESAIS--LSVPLIADENAGETW 876


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/659 (14%), Positives = 179/659 (27%), Gaps = 147/659 (22%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-- 84
            + I+    A +   V      +   +   L   L D  V+  A     +     K    
Sbjct: 330 HSKISTLTLAVEGG-VYEV---KSEDIGQWL-TALEDSEVVVTA-----DGKSLYKAALC 379

Query: 85  -GIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            GI          ++ A           L         +                    +
Sbjct: 380 AGIG--DLPVYDVTLAAYLLDPTRTAYGLTYLSEVFGRT--------------------L 417

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           +    +       +A  ++  Y         +    L    +    L      +   G+ 
Sbjct: 418 NEVKGEAQNETANEAAFVYSLYGPVQQALEEKGLSSLFETIES--PLERTLAVMELNGFT 475

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           ++ D + +++  +++E   L+ +I  L  G   +   T  L + LF   G+ ++  ++  
Sbjct: 476 VNRDRLEEMKADLSREADALETEIYDLA-GESFNINSTKQLGVILFEKMGLPVIKKTKTG 534

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
             T  S+L            IL   A        L+ L   +     R+  +      + 
Sbjct: 535 YSTDSSVLEELAEQSEIVPKILKFRALKKLISTYLDGLEPLIDEKTERVYTSFNQMV-TA 593

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                                +RS  +   G   
Sbjct: 594 TGRLSSSDPNLQNIP------------------------IRTEQGRKIRSFFVPGEGYDY 629

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LV  D + IE R+LA ++ +   I  F + +DI+  T ++ F  P D+V+ E R+  K +
Sbjct: 630 LVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVFGVPFDEVTGELRSHAKAV 689

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L + +        S F  +     +   + ++       
Sbjct: 690 NFGIIYG-----ISDFGLSRNLGITRNRAKEYIESYFARYSTIHDYMNGLVEEARRTGES 744

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             + G                +                                      
Sbjct: 745 RTMFGRL---------RTLPEISSKNFMRRSFAER------------------------- 770

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                 + +NT             KL  N VQ        +   
Sbjct: 771 ----------------------TAMNTPIQG---SAADIIKLAMNAVQ-------KK--L 796

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            A      +++ VHDE+V E P     ++   L   M +  +    +PL A+ +    +
Sbjct: 797 EALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEVVT--LSVPLIADIHTGTNW 853


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/664 (15%), Positives = 176/664 (26%), Gaps = 134/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             +   A +         D T         L  +L D       H      +      G 
Sbjct: 376 GRVDALAISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAH-GW 434

Query: 87  DIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDS 142
           ++       T++ A           L + C   L     L +   G  L      G  D 
Sbjct: 435 EL-GGVVSDTALAAYLVQPGQRRFDLADLCRKYLGRE--LEEDSSGDQLT--LDLGGEDG 489

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                     V+A            E  +     L  L + E  L  +   +   G   D
Sbjct: 490 AGSGRQHLLAVRASATRDLAGVLSAELDKRGGTHL--LHEVELPLVDVLARLERAGIAAD 547

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEG 259
              + +LQ   A   +   E   ++      +      L+  LF   G+           
Sbjct: 548 RPYLEELQGEFAAAGRVAVERAHEIVGREF-NLGSPKQLQQVLFEDLGLPRTKKIKTGYT 606

Query: 260 TLKSILSHSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
           T    L+            ++L+    +      +  L + V+ DGR+  T     A  T
Sbjct: 607 TDADALAWLASQTDNELPAVLLHHRDQTKLRTT-VEGLIKTVADDGRIHTTFNQTVA-AT 664

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-L 376
           GR S      QN+P                                +R   +   G + L
Sbjct: 665 GRLSSTDPNLQNIP------------------------VRTDVGRRIRRAFVVGEGYEEL 700

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++GE   I AF +G D +    A+ F+  +++V  E R+  K M 
Sbjct: 701 LTADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMS 760

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             L                GL                                   + + 
Sbjct: 761 YGL--------------AYGLS------------------------------AYGLSQQL 776

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     + + + + A+  GV      + E    V      +                  
Sbjct: 777 GITPEESKRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETIL------------------ 818

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+  D         ++              +Q  + DI+   M  
Sbjct: 819 --------GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADIIKVAMLR 861

Query: 617 ATKNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                        ++L VHDE+V E        V  +    M+        +PL      
Sbjct: 862 VDAALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVAREMSSAYD--LRVPLAVSVGS 919

Query: 670 AKRY 673
            + +
Sbjct: 920 GQNW 923


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 187/663 (28%), Gaps = 140/663 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85
            +   A++  D  +   D+ E    P  L ++L  +T + V     ++     +    LG
Sbjct: 333 DLVGFAWSCGD-KLYTTDKLELLQEPI-LKEFLE-KTPLKV-----YDFKKAKVLLNRLG 384

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +++ +  +  + +         +        N                 + KG   + P 
Sbjct: 385 LNLQAPAY-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAIPE 438

Query: 146 DCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                 H+ A ++        V         +L  L D E+ L  +   +   G ++  +
Sbjct: 439 REKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKE 497

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEG 259
            +L++Q       ++L ++I +L      +      L + LF   G+             
Sbjct: 498 TLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYS 556

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L            IL+    +      +  L + +  DG++         ++TGR
Sbjct: 557 TAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQTGR 615

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   +       L+ 
Sbjct: 616 LSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLS 651

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437
           +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +  
Sbjct: 652 SDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNF 711

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L                                        
Sbjct: 712 GVVYG-----ISDFGLSNNL---------------------------------------G 727

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +  +  G+     ++                                 
Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK------------------ 769

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+      +        R          + +Q  + DIL   M   
Sbjct: 770 --------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMIQL 812

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670
            K          ++L VHDEIV E P +   +V  L    M +       +PL A+  E 
Sbjct: 813 DKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAIQ--LSVPLIADENEG 870

Query: 671 KRY 673
             +
Sbjct: 871 ATW 873


>gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/631 (13%), Positives = 181/631 (28%), Gaps = 128/631 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++ ++L D        +    R +     LG+ +P   +    + +       +  +   
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLKLPDIAF-DVLLASYLINPDENSNDLGK 418

Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   +      +   GK    +  +  +    +            LF        +
Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E I    
Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEA 528

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L+           IL+    +
Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L +A   D ++         ++TGR S      QN+P ++           
Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPARD----------- 635

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +      ++  +D + IE RVL+ I+G++   +AF +
Sbjct: 636 --------------EGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G DI+  T  K F     D+V+ + R   K     + Y               + + +  
Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG-----ISDYGLAQNIGISRKQ 736

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   FE + +   +   M  +  E    + L            R     +     +
Sbjct: 737 AKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHR---------RRYLPQIHSRNFN 787

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           L +                                                   + +NT 
Sbjct: 788 LRKFAER-----------------------------------------------TAMNTP 800

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                       K+    +Q        + +  A      ++L VHDE++ E P      
Sbjct: 801 IQG---SAADIIKVAMIRMQ--------KALDEAH-LQAKMLLQVHDELIFEAPTAEMAQ 848

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +G L   +M    S A  +PLK E +    +
Sbjct: 849 LGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877


>gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 881

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/631 (13%), Positives = 181/631 (28%), Gaps = 128/631 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++ ++L D        +    R +     LG+ +P   +    + +       +  +   
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIAF-DVLLASYLINPDENSNDLGK 418

Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   +      +   GK    +  +  +    +            LF        +
Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E I    
Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEA 528

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L+           IL+    +
Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L +A   D ++         ++TGR S      QN+P ++           
Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPARD----------- 635

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +      ++  +D + IE RVL+ I+G++   +AF +
Sbjct: 636 --------------EGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G DI+  T  K F     D+V+ + R   K     + Y               + + +  
Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG-----ISDYGLAQNIGISRKQ 736

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   FE + +   +   M  +  E    + L            R     +     +
Sbjct: 737 AKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHR---------RRYLPQIHSRNFN 787

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           L +                                                   + +NT 
Sbjct: 788 LRKFAER-----------------------------------------------TAMNTP 800

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                       K+    +Q        + +  A      ++L VHDE++ E P      
Sbjct: 801 IQG---SAADIIKVAMIRMQ--------KALDEAH-LQAKMLLQVHDELIFEAPTAEMAQ 848

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +G L   +M    S A  +PLK E +    +
Sbjct: 849 LGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/661 (12%), Positives = 180/661 (27%), Gaps = 139/661 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
               W D+        E      D   + +++       ++    +  ++     +    
Sbjct: 341 ICIGWGDDQQIYIAEPEVVFASDDFKNWAKEKETKKQVFDAKRTYVALRRQ---KVDITS 397

Query: 93  W-ICTSVLARTNGLPSSLKNACLALNFSEHLT-----KMEEGKALIARFCKGSIDSPPYD 146
                 + +       + K+                 +   GK                 
Sbjct: 398 ISFDILLASYLLNTKDNSKDLSEV-AMEHDYYDVSSDESVYGKGAK------IAIPEDKK 450

Query: 147 CTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
            T  +  +  +      K+  +   + +  +L    + E  L ++   +   G +++   
Sbjct: 451 VTYDHVARKIKAIRILSKQLSDNLEKNVQTKLFD--EMELPLSIVLAEMELTGVKVNDKR 508

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +++++E  A     +++ + +L      +      L + LF   G  +V  ++    T  
Sbjct: 509 LMEMKEEFAIRLNDIEQRVYELAGEKF-NLNSPKQLGVILFEKMGYPVVKKTKTGYSTAV 567

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
            +L          + IL     +      +  L + +    G++        A +TGR S
Sbjct: 568 DVLEQLKEQAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIA-QTGRLS 626

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380
                 QN+P                                +R   +    G K+  +D
Sbjct: 627 SVDPNLQNIP------------------------IRLEEGRKIRQAFVPSHEGWKIFASD 662

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVL  ++ +    +AF  G+DI+ +T  + F     ++VS E R   K +   +
Sbjct: 663 YSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNFGI 722

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L                                        + 
Sbjct: 723 VY-----GISDYGLSQNL---------------------------------------GIS 738

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               +     +  K+ GV    +D+                                   
Sbjct: 739 RKEAQRFIDTYFEKYPGVKTYMEDIVREAKDKG--------------------------F 772

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
           +     RR    ++      L +      R            +Q  + DI+   M    +
Sbjct: 773 VETLFHRRRYLPEINSRNFNLRSFA---ERTAI------NTPIQGSAADIIKIAMIKMDE 823

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E P+     +  L   +M         +PLK +    K 
Sbjct: 824 RLKESKLKATMLLQVHDELIFEAPEEEIEELKALVVEVMEGAVE--LSVPLKVDSNSGKS 881

Query: 673 Y 673
           +
Sbjct: 882 W 882


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/602 (14%), Positives = 156/602 (25%), Gaps = 139/602 (23%)

Query: 88  IPSKRWICTSVLARTNGLPSS--LKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           + S R   T V A       S             +                     D  P
Sbjct: 449 VDSTRLFDTVVAAYLLDSVRSDFTDAYLAETYLHASLP-------------SAAGEDGAP 495

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            D        AW               +    +   +  E  L  +  ++   G  +D  
Sbjct: 496 ADAVSIAARGAWLARTLREPLAAALEAQGADAIF--TKIEMPLVRVLASMERAGMYVDPA 553

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMS---E 258
            +    + +  + + L+  I +L  G   +      L   LF   G+             
Sbjct: 554 RLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGYY 613

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L           LIL     +      L+TL      DGR+  T      + TG
Sbjct: 614 STNAKVLEDLAKNHEIVRLILEFREKTKIKSTYLDTLGPLRRHDGRVHTTYNQT-ITATG 672

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                V+       G   V 
Sbjct: 673 RLSSSSPNLQNIP------------------------TRSELGHAVKRAFSVEEGSVFVA 708

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA ++G++  + AF  GED +  T A+ F  P+D+V+ + R+        
Sbjct: 709 IDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAARVFGVPVDEVTPQLRSRA------ 762

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                 +A +  +    Q    +    +
Sbjct: 763 --------------------------------------KAVNFGIVYGQQAYGLSQTLDI 784

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  +  A+   + GV     +                 RR                
Sbjct: 785 PMAEAREMIDAYFRAYPGVRTYLDETVTFAKQTGYAETMYGRRRPIPE------------ 832

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                   R+    + G+ + +                   + +Q  + DI+   M +  
Sbjct: 833 -------LRIPAQRMFGERTAM------------------NHPMQGSAADIIKIAMVHVA 867

Query: 619 KNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           +          ++L VHDE+  E P      +  +    M         +PL A+    +
Sbjct: 868 ERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEMEGVAE--LRVPLIADASIGE 925

Query: 672 RY 673
            +
Sbjct: 926 TW 927


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/594 (13%), Positives = 156/594 (26%), Gaps = 130/594 (21%)

Query: 87  DIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           ++         V A          + ++                          G     
Sbjct: 397 NVKQSSAFDVIVAAYLLNPLKSDYTYEDVAEQY--------------------LGIAGGI 436

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
             +       +A+  F      D +       RL    + E  L      +   G +++ 
Sbjct: 437 QAELNVKCCYEAYTAFAAASVLDNKLKEAEMDRLF--YEIEMPLVFTLYEMESAGVKVEA 494

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + +    + + ++  +L+  I ++      +      L + LF    +     ++    T
Sbjct: 495 EALKLYGDQLGEQIIQLEHQIYEMAGEEF-NINSPKQLGVILFEKLNMPHAKKTKTGYST 553

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL     +       + L+  +  DGR+ G       + TGR 
Sbjct: 554 AADVLEKLAEEYPIVSKILEYRQLAKLKSTYADGLAVFIGDDGRIHGKFNQTV-TATGRL 612

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +       V AD
Sbjct: 613 SSTEPNLQNIP------------------------VRMELGRMIRKVFVPKEDCVFVDAD 648

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA  +G++  IKA+    DI+  T ++ F+TP D+V+  QR   K +   + 
Sbjct: 649 YSQIELRVLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIV 708

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y        +      L + +          FE +   +       +   E      L G
Sbjct: 709 YG-----ISSFGLSMDLSITRKEAAEYIEHYFETYPGVKKFLDDSVENAKEKGYAVTLFG 763

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +           +                                           
Sbjct: 764 RRRPV---------PELKSSNFMQRN---------------------------------- 780

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         G+   +N          T    +   ++     D+  E        
Sbjct: 781 -------------FGERVAMNAPIQG-----TAADIMKIAMI-----DVHKE--LKKRNM 815

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E   +    V  +    M         +PL  + +  K +
Sbjct: 816 KSRMILQVHDELLIEAECSEVDEVKEILRDKMENAVK--LSVPLIVDMHTGKNW 867


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 189/710 (26%), Gaps = 185/710 (26%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAM 53
              + +DIET                   I L   +  ++P  + D            + +
Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVV 1269

Query: 54   P--------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
            P          L    + +  + V HN  F+     +  G +        T V ++    
Sbjct: 1270 PGRNELIKCEWLKNLFKSKDTVKVFHNGKFDINFL-RVYGFEFEG-PIFDTMVASKLLVA 1327

Query: 106  PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                   L +                            +       +  + +Q ++    
Sbjct: 1328 SRYISCKLTHVSERY--------------------LNIVLDKTQQYSDWSTLQLFEEQLL 1367

Query: 162  YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            Y  RD      L+  L  L            E    L    +   G ++D D +  LQ+ 
Sbjct: 1368 YSARDSFVLLPLYVILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDE 1427

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNI 270
            + QE +++  D+    +    +      +   L     I      +            N+
Sbjct: 1428 LKQEHQEISNDLYSQLNHSEINLNSQKQVLEKLQE-LKIMDRSKKKIISDTSESTLIRNM 1486

Query: 271  TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
            +      +     ++ +       L   ++    R+       GA   GR+S      Q 
Sbjct: 1487 SNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQQ 1545

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +PR                                R C +A  G K V+AD + IE R+ 
Sbjct: 1546 VPRD----------------------------KKFRECFVAPKGSKFVIADFSQIELRIA 1577

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            A IA +   I+A+    D++  T +   N  I++V+KE+R + K +   L +       +
Sbjct: 1578 AEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSINGLR 1637

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
              A                                      E     KL  T  + +  +
Sbjct: 1638 MYA--------------------------------------ETGYNLKLTQTEAKEIYTS 1659

Query: 510  WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
            +    +G+L     +             +                               
Sbjct: 1660 FFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT--------------- 1698

Query: 570  YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIV 625
                                      +     VQ  S DI  E M             I+
Sbjct: 1699 --------------------------RSLNYPVQGTSADITKETMARLVDSVKPLNAKII 1732

Query: 626  LTVHDEIVSETPDTPYF-SVGTLCSLM-TKNPSWAKGLPLKAEGYEAKRY 673
            + VHDEI+ E P+     ++  L   M      + K +P++A G     +
Sbjct: 1733 ICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/635 (14%), Positives = 178/635 (28%), Gaps = 142/635 (22%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  +L         H++  E     +  GI +       T++ A          +     
Sbjct: 372 LQTWLESAA-PKYLHSAK-ETFHMLRGRGITLRGIA-HDTAIAAYLLRPGQRTYDLGDVY 428

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  ++  G   ++   + +              +  +              EL+  
Sbjct: 429 Q-RHLQRQLTTGSDQLSLLDEDTTLVDSAAAILELAEKLTEDLRAINS------YELYAD 481

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L      E  L  +   + D G  +D+D++ +  + IAQ+    ++    L D    +  
Sbjct: 482 L------ELPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLS 535

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK---DLILNRLASSGSAIL 290
               L + LF    +     ++    T    +              L+ +R      +  
Sbjct: 536 SPKQLSVVLFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKST- 594

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + V  DGR+  T     AS TGR S      QN+P                   
Sbjct: 595 -IEGLIKTVHDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP------------------- 633

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                    A   +RS     +G   L+ AD + IE RV+A ++ +   I+A+  GED++
Sbjct: 634 -----VRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLH 688

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
               ++ F+ PID V+ E R   K M                    GL            
Sbjct: 689 NFVGSRVFDVPIDDVTPELRRRVKAMSYG--------------LVYGLS----------- 723

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  + +  +     + + +++  +  GV +   ++ E   
Sbjct: 724 -------------------AYGLSNQLGIPAGEAKKIMESYFQRFGGVKRYLDEVVEQAR 764

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               RR    ++  D      A     R
Sbjct: 765 RDGYTSTVF--------------------------GRRRYLPELTSDN---RVARENAER 795

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----------GYDIVLTVHDEIVSETPDT 639
                       +Q  + DI+   M                   ++L VHDE+V E    
Sbjct: 796 AA------LNAPIQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPG 849

Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M +  +    +PL+        +
Sbjct: 850 ELEQVQAIVEEEMDRAIT--LRVPLEVSAGTGTNW 882


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/668 (14%), Positives = 187/668 (27%), Gaps = 141/668 (21%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A A +     L   T  +      L +L DET        +F+     +   
Sbjct: 404 HHAPIVGIALANERGRFFLRPETAVAD--PKFLAWLGDETKKKT----MFDSKRAAVALN 457

Query: 83  TLGIDIPSKRWICTSVLARTNGLP----SSLKNACLALNFSEH-LTKMEEGKALIARFCK 137
             GI++     +   +LA     P      +        +      +   GK        
Sbjct: 458 GKGIELAGVGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKR---- 513

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
               + P + T A  +          +  +       ++   L++ E  L  +   +   
Sbjct: 514 ----TVPDEPTLAEQLVRKAAAIWALEEPLMDELRRNEQDRLLTELEHALAGILANMEFT 569

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G ++D   + ++   + ++ + ++  I +L      +      L   LF    + ++  +
Sbjct: 570 GVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEF-NINSPKQLGTVLFDKLQLPVLKKT 628

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + IL+           +  L + V    G++        
Sbjct: 629 KTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQA- 687

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372
            ++TGR S      QN+P                                +R   +    
Sbjct: 688 LTQTGRLSSVEPNLQNIP------------------------IRLEEGRKIRQAFVPSEP 723

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              +  AD + IE RVLA IA +D  I+AF    DI+  T    F+   + V+   R   
Sbjct: 724 DWLIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEEDVTANMRRQA 783

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +                    G+     +QN                           
Sbjct: 784 KAVNF--------------GIVYGISDYGLAQN--------------------------- 802

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +         + + A   GV Q   ++ +           +              
Sbjct: 803 ---LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLH------------- 846

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR    D+      + T      R            +Q  + DI+ +
Sbjct: 847 -------------RRRYLPDITSRNFNVRTFA---ERTAM------NTPIQGSAADIIKK 884

Query: 613 GMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665
            M +        +    ++L  HDE++ E P      +  L   +M +  +    +PLK 
Sbjct: 885 AMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAVT--LRVPLKV 942

Query: 666 EGYEAKRY 673
           + +    +
Sbjct: 943 DYHYGPTW 950


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/627 (14%), Positives = 169/627 (26%), Gaps = 144/627 (22%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
                   H +     +     GI++       T++ A          +L +        
Sbjct: 377 SSDAPKYLHEAKAAWHMLAG-RGIELRGIA-HDTALAAYLLRPGQRTYALTDVSQRH--- 431

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--L 177
                      L       +      D             G   +   E T +L +    
Sbjct: 432 -----------LQKSLGAATEQLSILDENP-----LVDQAGAIMELAAELTAQLQEIDSF 475

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
              +D E  L  +   +   G  +D D++   ++   ++  + +    +L      +   
Sbjct: 476 ELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNS 535

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL 292
              L+  LF    +     ++    T    +            D +L            L
Sbjct: 536 PKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT-L 594

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +  DGR+  T      + TGR S      QN+P                     
Sbjct: 595 EGLIKTIQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP--------------------- 632

Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                  A   +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++  
Sbjct: 633 ---VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNY 689

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             +K F+ P+D+V+ E R   K M                    GL              
Sbjct: 690 VGSKVFDVPVDEVTPELRRRVKAMSYG--------------LVYGLS------------- 722

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                + +  +     + + +++  +  GV +   ++       
Sbjct: 723 -----------------AFGLSQQLGIPAREAKEIMESYFERFGGVKRYLDEVVVQARKD 765

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                                             RR    ++  D      A     R  
Sbjct: 766 GYTSTVF--------------------------GRRRYLPELNSDN---RVARENAERAA 796

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                     +Q  + DI+   M    K        ++L VHDE+V E        V  +
Sbjct: 797 ------LNAPIQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRI 850

Query: 648 CSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               M K       +PL+      K +
Sbjct: 851 LEREMDKAIE--LTVPLEVSVGVGKNW 875


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 32  HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             GI++    +    + A        + +   A        +       +  + KG+  +
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRPDEAV--YGKGAKRA 140

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P +   A H+          +R         ++   L + E+ L  +   +   G ++D
Sbjct: 141 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 200

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              + ++ E +A++ + +++ I +L      +      L + LF    + ++  S+    
Sbjct: 201 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKSKTGYS 259

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL+           +  L + V  D +   T+     ++TGR
Sbjct: 260 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 319

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378
            S      QN+P                                +R   + S     +  
Sbjct: 320 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 355

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IA +D  ++AF    DI+  T    F    D+V+   R   K +   
Sbjct: 356 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 414

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+     +QN                                +
Sbjct: 415 -------------GIVYGISDYGLAQN------------------------------LNI 431

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    + +     GV +  +++ +           +                    
Sbjct: 432 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 472

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    D+      + +   ++              +Q  + DI+ + M +  
Sbjct: 473 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 516

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                 +    ++L VHDE++ E P      +  L   +M +  +    +PLK + +   
Sbjct: 517 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGS 574

Query: 672 RY 673
            +
Sbjct: 575 TW 576


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/673 (12%), Positives = 170/673 (25%), Gaps = 142/673 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLRDETVMCVAHNSLFERILFK---- 81
            I   +  +++                +   L +     +V  V  +      +F     
Sbjct: 178 EILGMSVCFNENEAIYIPVENFITADYLGKKLSEL--SNSVSLVTFDIKESYRVFTPFEV 235

Query: 82  --KTLGIDIPSK---------RWICTSVLARTNGLPSS----LKNACLALNFSEHLTKME 126
             +  G     +         R     + A       +       A   L  S       
Sbjct: 236 SDRDYGYSCKGEHTEDYKSKPRCFDDLIAAYLVNPNKNDYEVSDVAKEYLGLSLEKKIDL 295

Query: 127 EGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
            GK  I      S+      C       +          + ++    +          E 
Sbjct: 296 FGKKSIREADDKSVVQYACKCAFVCFKAEPLICKKLEKLQMLDLFYNI----------EM 345

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +  ++   G     D +    + +     +L++ I +       +      L   L
Sbjct: 346 PLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAGVEF-NINSPKQLGEIL 404

Query: 246 FLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
           F   G+     ++    T   +L            IL     +       + L+  +  D
Sbjct: 405 FERLGLPAEKKTKSGYSTAADVLEKLAPDYPIVADILEYRGLAKLKSTYADGLAAYIEED 464

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  +      + TGR S      QN+P                               
Sbjct: 465 GRIHTSFNQT-ITATGRISSTEPNLQNIP------------------------MRTELGR 499

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   +         AD + IE R+LA ++ +   I A+  G+DI+  T +K F+ P +
Sbjct: 500 LIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGITASKVFHVPFE 559

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+  QR   K +   + Y        +      L +            FE +   +++ 
Sbjct: 560 EVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLSISVKEAKEYMDKYFETYPGVKAYQ 614

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISAR 541
             +     E      + G    +           +      + +      +      +A 
Sbjct: 615 ERVIADAKEKGYSLTMFGRRRPI---------PELKASNYMMRQFGERVAMNAPIQGTAA 665

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
            +  +  + +                  Y  +K +                   KL   +
Sbjct: 666 DIMKIAMINV------------------YFRLKKE-------------------KLVSKL 688

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKG 660
           +                            E+V ET       V   L   M +       
Sbjct: 689 I------------LQIHD-----------ELVIETLKDEEEKVTALLTQEMERAAD--LS 723

Query: 661 LPLKAEGYEAKRY 673
           +PL AE +    +
Sbjct: 724 VPLLAECHSGTDW 736


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/690 (13%), Positives = 182/690 (26%), Gaps = 154/690 (22%)

Query: 9   ETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63
           E  S         +G   + E     L   AW +        T   ++  +    + L  
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369

Query: 64  ETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL--N 117
              +       ++     +      ID+P   +  T +          +L +    L  N
Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN 421

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     GK               +   +   +   +       +  E    LF   
Sbjct: 422 LPLDTDDAVYGKGAKRAIP-EKTRFLEHLAKKVKVLVDSEANVMQQLKANEQEELLF--- 477

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               + E+ L  +   +  RG ++  + + ++     +  + L ++I +L      +   
Sbjct: 478 ----EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF-NINS 532

Query: 238 TYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
              L   LF   G+             T   +L            IL     +      +
Sbjct: 533 PKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYI 592

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +  DG++         ++TGR S      QN+P                     
Sbjct: 593 IGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP--------------------- 630

Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R   + S     L+ +D + IE RVLA I+ ++  I AF  G DI+ +
Sbjct: 631 ---VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687

Query: 412 TYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           T  + F     + V+   R   K +   + Y               L             
Sbjct: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNL------------- 729

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                      +     +     +  ++ G+    + +      
Sbjct: 730 --------------------------GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKD 763

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                              RR    D+      +        R 
Sbjct: 764 KGYVETLFH--------------------------RRRSLPDINSRNFNIRQFA---ERT 794

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                    + +Q  + DIL   M N  +          ++L VHDEIV E P+    ++
Sbjct: 795 AI------NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848

Query: 645 GTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             L    M    S    +PL A+    + +
Sbjct: 849 KELVTKTMESAIS--LSVPLIADENAGETW 876


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/665 (14%), Positives = 186/665 (27%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D        T++  +  +  L ++L  +T + V     ++     +    
Sbjct: 333 DLVGFAWSCGDR----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 382

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            G+++ +  +  + +         +        N                 + KG   + 
Sbjct: 383 FGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAI 436

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           P       H+ A ++        V         +L  L D E+ L  +   +   G ++ 
Sbjct: 437 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 495

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257
            + +L++Q       ++L ++I +L      +      L + LF   G+           
Sbjct: 496 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL+    +      +  L + + +DG++         ++T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQ-DLTQT 613

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 709

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 710 NFGVVYG-----ISDFGLSNNL-------------------------------------- 726

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +  +  G+     ++                               
Sbjct: 727 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 769

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      +        R          + +Q  + DIL   M 
Sbjct: 770 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 810

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
              K          ++L VHDEIV E P     +V  L    M +       +PL A+  
Sbjct: 811 QLDKALVEGGYQTKMLLQVHDEIVLEVPKAELAAVKVLVKQTMEEAIQ--LSVPLIADEN 868

Query: 669 EAKRY 673
           E   +
Sbjct: 869 EGATW 873


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 174/662 (26%), Gaps = 142/662 (21%)

Query: 27  QAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
            AV+   A +  D+  +     D    +   + L +   +         ++++   F   
Sbjct: 323 DAVLYGFAVSLKDQ-TEYIELQDALADTRFLAWLKE--ENGK-------AVYDAKNFYHA 372

Query: 84  L---GIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEHLTKM-EEGKALIARFCKG 138
           L   GI+    ++    + A       S          F   L K    GK    +    
Sbjct: 373 LHKNGIEFADVKF-DVMIAAFLVDGTLSDYDKLAEKYQFDRSLLKDDVFGKKGKGKL--- 428

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                  +  R   +QA  L     + D        K L      E  L  +   +   G
Sbjct: 429 ---VDLDEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTI--EMPLTHVLYAMEKEG 483

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
               L  + ++    + +   L   I ++      +      L   L+   G+       
Sbjct: 484 VVTSLSTLDEIARATSDKIDTLSAQIYEMAGMEF-NINSPKQLAQILYDELGLKAGKKR- 541

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L           L+L               LS+ V  DG++         ++TG
Sbjct: 542 STAADVLEKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLKDGKIHTIFNQIQ-TQTG 600

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+                                 +R   +AS G  L+ 
Sbjct: 601 RLSSSEPNLQNI------------------------SVRDEEGKEIRKAFVASEGHVLLS 636

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+LA +A E+  I AF +G DI+  T  + F+   D V    R   K +   
Sbjct: 637 ADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVDANMRRSAKTVNF- 695

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G      S+                                 +
Sbjct: 696 -------------GIVYGQSDFGLSEQ------------------------------LGI 712

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                      + A +  +        +            +                   
Sbjct: 713 SRKEAHAFIDKYFASYPNIKSFMDSTIQFCEENGYVKTLFN------------------- 753

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
                  RR    ++      +     +               +Q  + D++   M +  
Sbjct: 754 -------RRRYIKEISDKNYMMREFGKRA---------AMNAPIQGSAADLIKLAMIHIF 797

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAK 671
                 +    ++L +HDE++ +  +     + ++    M +       +PL AE    K
Sbjct: 798 ERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAMK--LRVPLIAEANIGK 855

Query: 672 RY 673
            +
Sbjct: 856 SW 857


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/632 (14%), Positives = 172/632 (27%), Gaps = 139/632 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L Q+L +       H +     +     GI++       T++ A              
Sbjct: 353 AALAQWL-NSDAPKYFHEAKAAFHMLAG-RGIELRGIA-HDTAIAAYLLRPGQRTYELSD 409

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                              R  K ++       +  +            +   E T++L 
Sbjct: 410 VY----------------QRHLKKTLGQASDQLSLLDDTSLVDQAAAIMELAAELTKQLQ 453

Query: 175 --KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                   +D E  L  +   +   G  +D++++    +   ++  + +    +L     
Sbjct: 454 AIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDS 513

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGS 287
            +      L+  LF    +     ++    T    +            D +L        
Sbjct: 514 LNLNSPKQLQAVLFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHREYQKM 573

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               L  L + V  DGR+  T     AS TGR S      QN+P                
Sbjct: 574 KTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP---------------- 615

Query: 348 NRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                       A   +RS  I   G   L+ AD + IE RV+A ++ +   I+A+  GE
Sbjct: 616 --------VRTEAGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGE 667

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++    +K F+ P+D+V+ E R   K M                    GL         
Sbjct: 668 DLHNYVGSKVFDVPVDEVTPELRRRVKAMSYG--------------LVYGLS-------- 705

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     + +  +     + + + +  +  GV +   ++ E
Sbjct: 706 ----------------------AFGLSQQLGIPAREAKEIMENYFERFGGVKRYLDNVVE 743

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  RR    ++  D         +
Sbjct: 744 KARKDGYTATVF--------------------------GRRRYLPELNSDNRLARENAER 777

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642
                          +Q  + DI+   M             ++L VHDE+V E       
Sbjct: 778 A---------ALNAPIQGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEAD 828

Query: 643 SVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            V  +    M         +PL+      K +
Sbjct: 829 EVKKILEREMDSAIE--LTVPLEVSAGAGKDW 858


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/710 (13%), Positives = 187/710 (26%), Gaps = 185/710 (26%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------EQSAMP 54
              + +DIET                   I L   +  ++P  + D         +  ++ 
Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVV 1269

Query: 55   ---------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                       L +  + +  + V HN  F+     +  G +        T V ++    
Sbjct: 1270 PGRNELIKCEWLKKLFKSKETVKVFHNGKFDINFL-RVYGFEFEG-PIFDTMVASKLLVA 1327

Query: 106  PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                   L +                            +       +  + +Q ++    
Sbjct: 1328 SRYISCKLTHVSERY--------------------LNIVLDKTQQYSDWSTLQLFEEQLL 1367

Query: 162  YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            Y  RD      L+  L  L            E    L    +   G ++D D +  LQ+ 
Sbjct: 1368 YSARDSFVLLPLYVILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDE 1427

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNI 270
            + QE +++   +    +    +      +   L     I      +            N+
Sbjct: 1428 LKQEHQEISNTLYSQLNQSEINLNSQKQVLEKLQE-LKIMDKSKKKIISDTSESTLIRNM 1486

Query: 271  TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329
            +      +     ++ +       L   ++    R+       GA   GR+S      Q 
Sbjct: 1487 SNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQQ 1545

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +PR                                R C +A  G K V+AD + IE R+ 
Sbjct: 1546 VPRD----------------------------KKFRECFVAPKGSKFVIADFSQIELRIA 1577

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            A IA +   I+A+    D++  T +   N  I+ V+KE+R + K +   L +       +
Sbjct: 1578 AEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSINGLR 1637

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
              A                                      E     KL     + +  +
Sbjct: 1638 MYA--------------------------------------ETGYNLKLTQNEAKEIYTS 1659

Query: 510  WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
            +    +G+L     +             +                               
Sbjct: 1660 FFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT--------------- 1698

Query: 570  YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIV 625
                                      +     VQ  S DI  E M             I+
Sbjct: 1699 --------------------------RSLNYPVQGTSADITKETMARLVDLVKPLNAKII 1732

Query: 626  LTVHDEIVSETPDTPYF-SVGTLCSLM-TKNPSWAKGLPLKAEGYEAKRY 673
            + VHDEI+ E P+     ++  L   M      + K +P++A G     +
Sbjct: 1733 ICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/656 (13%), Positives = 174/656 (26%), Gaps = 130/656 (19%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A +   A A  +   +     +     + LL+Y+  +    + +++      + +    
Sbjct: 323 DATLYGFAIAHGNN-CEYISLEDAKNDTA-LLEYIHTDN-GKIVYDAKNVYHAWHRNHIA 379

Query: 87  DIPSKRWICTSVLARTNGLPSS-LKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPP 144
            +P  R     + A       S          F      +   GK       K  +    
Sbjct: 380 FVPVHR--DVMLEAFLLDGMISDYDKLAEKYAFDCTLSKEDVFGKK-----GKPKLVVEE 432

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                A          E    D E  ++  K L      E  +  +   +   G    ++
Sbjct: 433 DAAAYAMQCAENLANIEQQLFD-ELEQKDMKELYDTI--EMPVVEVLYAMEKEGVHTSVE 489

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            + ++ E   ++ + L+  I +       +      L + L+   G+        T   +
Sbjct: 490 TLQEIAEATGKKIEALNAQIYEYAGMEF-NINSPKQLAVVLYDELGLPCGKKR-STGADV 547

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L           L+L +             LS+ +  DG++         ++TGR S   
Sbjct: 548 LEKLKPVHPIISLLLEQRKYQKIYSTYAVGLSKHILKDGKIHTIFNQIQ-TQTGRLSSSE 606

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+                                 +R   +AS    L+ AD + I
Sbjct: 607 PNLQNI------------------------SVRDEEGKVIRKAFVASPQHTLMSADYSQI 642

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA +A E   I+AF  G DI+  T  + F+   D V    R   K +         
Sbjct: 643 ELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNF------- 695

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G      S+ +                               +     +
Sbjct: 696 -------GIVYGQSDFGLSEQL------------------------------GITMKEAK 718

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                + A +  +     D                                         
Sbjct: 719 RFIDKYFASYPNIKTFMDDTIAFCEENGYVKTMF-------------------------- 752

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            RR    ++      +     +               +Q  + D++   M +        
Sbjct: 753 GRRRYIKEINDKNYMMREFGKRA---------AMNAPIQGSAADLIKLAMVHIYQTMKEK 803

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L +HDE++ +  D    ++  +    M +       +PL AE    K +
Sbjct: 804 KVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQAMQ--LRVPLIAEASFGKTW 857


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 202/653 (30%), Gaps = 148/653 (22%)

Query: 38  DDEPVKLWDRTEQSA-----MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           ++E V + +  +        +   L +   D+ +  ++H+     ++ +K    DI +K 
Sbjct: 356 NEEKVYVVNVNKIKNENFHKLLELLKKLFEDKNIKKISHDIKNVYVVLRKY---DIDAKN 412

Query: 93  W-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           +   T + +       S             L ++   K  I                   
Sbjct: 413 FIFDTKIASYLLEPSKS----------DYILREIILEKLSINIDDSDEECKI-------- 454

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             + + +   Y K   E      + L    + E  L  +  ++   G+++D D + ++ E
Sbjct: 455 -KETYCIKEIYEKLQKEIKEANMEELF--YNVELPLTKVLASMECEGFKVDKDRLTEIGE 511

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268
               E K L+++I KL      + +    L   LF    + ++  ++    T   +L   
Sbjct: 512 KFKAEIKMLEKEIHKLAGEDF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKL 570

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             +      I++    +      +  L   +  DG++  +      + TGR S      Q
Sbjct: 571 KDSHPIISKIIDYRQITKLDSTYVEGLKHVIDEDGKIHSSFNQTV-TTTGRLSSTEPNLQ 629

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P                                +R   +A+     +  AD + IE R
Sbjct: 630 NIP------------------------IKHEMGREIRKVFVANNEESVIFSADYSQIELR 665

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA IA ++  I AF + +DI+  T ++ F  P+++V+   R+  K +   +        
Sbjct: 666 VLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIV------- 718

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+                                   +    +     +   
Sbjct: 719 -------YGIG------------------------------AFSLSKDINVSRKEAKEYI 741

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             + +++  V +   D+                            + ++D  +    +R+
Sbjct: 742 DTYFSRYPNVKKYIDDIIN--------------------------KSEQDGFVTTIMNRK 775

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD---- 623
               +++     + +   +L              +Q  + DI+   M +  +        
Sbjct: 776 RYIPEIQSRNRIVRSFGERL---------AMNTPIQGSAADIIKLAMVHVYEELIKRNLK 826

Query: 624 --IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++L VHDE++          V   +   M    +    +PL+A+      +
Sbjct: 827 STLILQVHDELILNVYKDELEEVKQMVVEKMEGVMNLL--VPLEADVNIGITW 877


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/597 (14%), Positives = 162/597 (27%), Gaps = 142/597 (23%)

Query: 91  KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
             W   S+ A             +     L       K                      
Sbjct: 395 GNWQDLSLAAYLLNPLKDSYDYDDLSRDYLGLLLPSEKEL---------------GDSER 439

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +     +     +   R  +  REL++      + E  L      + + G  +D + +
Sbjct: 440 PGKYRAFLSLLSGKKLLSRLDKKERELYR------EIELPLVFTLHEMEESGILVDREAL 493

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
           L     + ++  ++ E I +       +      L   LF   G+     ++    T   
Sbjct: 494 LSYGAELREKIGEIRERIYREAGEEF-NLNSPQQLGQILFEKLGLPGGRKTKTGYSTAAD 552

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L   +        IL     S         L   +  DGR+ G       + TGR S  
Sbjct: 553 VLEKLSEENQLASDILEYRTYSKLNSTYAEGLLSWIREDGRIHGHFNQMV-TATGRISST 611

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                 R   I   G   + AD + 
Sbjct: 612 DPNLQNIP------------------------IRTEMGRRFRRVFIPKEGSIFIDADYSQ 647

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E R+LA ++G++  I+A+ N +DI+  T ++ F+ P+ +V+ + R   K +        
Sbjct: 648 VELRILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNF------ 701

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   +    +     
Sbjct: 702 --------GIVYGIS------------------------------AFGLSEGLSISRQEA 723

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +   + +   + GV +      E                                     
Sbjct: 724 KEYIERYFETYPGVKKFLDGEVELARKQGYVRTIF------------------------- 758

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             R+    D+        +   ++            + +Q  + DI+ + M   ++    
Sbjct: 759 -GRKRPVPDISSSNFARRSFGERV---------AMNSPIQGSAADIMKKAMNEVSRALKA 808

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL VHDE++ ETP+     V  L  L M         +PL A+    + +
Sbjct: 809 GAFRARIVLQVHDELLLETPEKEADQVEELLILSMQNAAK--LRVPLIADAKRGRNW 863


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/665 (14%), Positives = 187/665 (28%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  +    ++L  +T + V     ++     +    
Sbjct: 345 DLVGLAWSCGDK----LYATDKLELLQEPIFKEFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           LG+++ +  +  + +         +        N                 + KG   + 
Sbjct: 395 LGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAI 448

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           P       H+ A ++        V         +L  L D E+ L  +   +   G ++ 
Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257
            + +L++Q       ++L ++I +L      +      L + LF   G+           
Sbjct: 508 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL+    +      +  L + +  DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +  +  G+     ++                               
Sbjct: 739 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      +        R          + +Q  + DIL   M 
Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
              K          ++L VHDEIV E P +   +V  L    M +       +PL A+  
Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKALVKQTMEEAIQ--LSVPLIADEN 880

Query: 669 EAKRY 673
           E   +
Sbjct: 881 EGATW 885


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/634 (15%), Positives = 176/634 (27%), Gaps = 136/634 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLA 115
           +L+ L    +    H+      L  + L   +    +   T++ A               
Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDG------- 419

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQL-----FGEYCKRDVEA 169
                   ++E  K  I  F +    +   Y    A    A Q         +C      
Sbjct: 420 ------SYELE--KLGITYFNQEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGAL 471

Query: 170 TRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            + L  RL          D E  L  +   +   G  +D   + +  +++ +       +
Sbjct: 472 KKVLAPRLEELGMHQLYYDIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAE 531

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280
           I +L  G   +   T  L   LF   G+  V  ++    T   +L          D IL 
Sbjct: 532 IYELA-GETFNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILE 590

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               +      ++ L + ++ DGR+  +      + TGR S      QN+P         
Sbjct: 591 YRQYTKLKSTYVDGLGKVIAPDGRIHTSF-QNTVTATGRLSSTEPNLQNIP--------- 640

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +A  GK LV AD + IE R+LA IAG++  I+
Sbjct: 641 ---------------VRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIE 685

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF  GEDI+  T A+ F  P+D+V+K  R+  K +   + Y          +    + + 
Sbjct: 686 AFRTGEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYG-----ISAFSLSQDIGVP 740

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
            +         F  +    ++   + ++         L G          R     +   
Sbjct: 741 TYEAKEYIEKYFARFSGVHAYMTDVVNRAKTDGYVSTLFGR---------RRWLPELKSS 791

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +       V                                   +L    V       
Sbjct: 792 NFNTRSFGERVALNMPIQGTAADI---------------------MKLAMLHVHSRLREE 830

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                 +                                            ++ E P+  
Sbjct: 831 GLQARLI---------------------------LQVHDE-----------LIVECPEEE 852

Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             +V  L    M      A  +PL A+    + +
Sbjct: 853 AETVKALLSREMESVAQLA--VPLIADAAAGRSW 884


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/642 (14%), Positives = 162/642 (25%), Gaps = 132/642 (20%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
               L+  T+ +   S L   L D +V     NS  E  +F K   I++         + 
Sbjct: 344 GEGNLYIFTDINEAISILKPILTDISVKKYILNSK-ECTVFLKKHDIELEGL-VFDPLLA 401

Query: 100 ARTNGLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                    L      L+   S  L +  +   L   F             +   ++  +
Sbjct: 402 YYLLKPSGKLPGLRDLLDQELSLSLPEDIKEDNLYLVFMDNIFKLAEGMVPKLEDMELIE 461

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           LF                     +D E  L  +   +   G ++D + +  L     +E 
Sbjct: 462 LF---------------------NDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEEL 500

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
             L+  I +L      +      L   LF   G+ ++  ++    T   +L         
Sbjct: 501 NGLESKIHELAGEKF-NINSPKQLGGILFEKLGLPVIKKTKTGYSTGAKVLEKLEDKHPI 559

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             LI             ++ L   ++ D GRL  +      + TGR S      QN+P  
Sbjct: 560 IPLISEYRQLMKLKSTYVDALPPMINPDTGRLHTSFNQMV-TATGRLSSTEPNLQNIP-- 616

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWI 392
                                         +R   I       L+ AD + IE RVLA I
Sbjct: 617 ----------------------VRTDEGREIRRAFITENEDWVLLAADYSQIELRVLAHI 654

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++    AF  G+DI+  T ++ F    D+V+   R   KV+   + Y           
Sbjct: 655 SDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVINFGIAYGMSP-----YG 709

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L + +   +      FE +   + +   +  +         +            R 
Sbjct: 710 LARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYVTTIFNR---------RR 760

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +                                                 +L    
Sbjct: 761 YIPEINSRNYHRRSFAERTAINTPIQGTAADI---------------------MKLAMIK 799

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           V        +                               +               DE+
Sbjct: 800 VYNRLKENGSPARI---------------------------LLQVH-----------DEL 821

Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           + E P      +  +    M K       +PL         +
Sbjct: 822 ILEVPREDLTEMARIVKSEMEKAVD--MKVPLVVNLESGPNW 861


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/670 (13%), Positives = 177/670 (26%), Gaps = 126/670 (18%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + G+  Y E       A   + E V L+       +  D L    D+    + + ++ E
Sbjct: 349 KEAGISIYKEN-DAMWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 407

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIA 133
                  L I   +K     S+ A             +           +K E       
Sbjct: 408 VKEHLSHLTIHEMTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHP 467

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
               G +              + +       +  E       R     + E         
Sbjct: 468 MVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR-----EIEIPTMFALHD 522

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG  +D   +    + +    ++L E I K       +      L + LF    ++ 
Sbjct: 523 MEVRGIHVDSKALKGYGDQLVGRIEELQESIYKEAGEEF-NINSPKQLGVVLFDHMKLEG 581

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              ++    T   +L           +IL     +       + L+  +  D R+ G   
Sbjct: 582 AKKTKTGYSTSVEVLEKIEHLYPIIPMILEYRQLTKLKSTYADGLANFIQDDQRIHGKFN 641

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   + 
Sbjct: 642 QT-ITATGRISSTEPNLQNIP------------------------IRMELGRAIRKVFLP 676

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G   + AD + IE RVLA ++ ++  I A+   +DI+  T ++ F  P+D+V+  QR 
Sbjct: 677 EEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRR 736

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +                    GL                                 
Sbjct: 737 DAKAVNF--------------GIIYGLS------------------------------AF 752

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             +   K+     +     + A +  V +      E            +  R     +  
Sbjct: 753 GLSQDLKISRKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSS 812

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
               +                   G+   +                   + +Q  + DI+
Sbjct: 813 NFMQRN-----------------FGERVAM------------------NSPIQGTAADII 837

Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
              M          +    ++L +HDE++ ET    +  V  +    M    S    +PL
Sbjct: 838 KIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--LRVPL 895

Query: 664 KAEGYEAKRY 673
             +  +   +
Sbjct: 896 NIDIEQGASW 905


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/759 (13%), Positives = 196/759 (25%), Gaps = 193/759 (25%)

Query: 7    DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQS-------AMPSDL 57
            D ET S +P            A +      W    E V       ++        +   L
Sbjct: 386  DTETTSLEP----------RDAELVGIGCCWGKNMEDVAYIPTGHKTDKNLDKVTVLESL 435

Query: 58   LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----------------- 100
               L       V  NS F+R++F +  GI +    +  T + +                 
Sbjct: 436  KPVLESSEYPKVFQNSKFDRLVF-RCQGIKLTGV-FFDTMLASYVLNPEAKHSLEEIYIR 493

Query: 101  RTNGLPSSL----KNACL---ALNFSEHLTKMEEG------------------------- 128
                +  +L              +          G                         
Sbjct: 494  YLRNVGINLQSYQDVVSKNQTIADLDILKVADYCGTQVWVTFQLVEKLRTELEKADKNKS 553

Query: 129  --KALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              K+L            P              +   ++  +  E   E+ KR     D +
Sbjct: 554  TEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIEKRAFKTVDSQ 613

Query: 185  -------RDLWLLDQTINDRGY--------RIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                    ++  +D                 I    + KL +   Q  + ++  I ++  
Sbjct: 614  VLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLENIESQINQVET 673

Query: 230  GIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHS---NITQLAKDLILNR 281
              + +      L   LF I   +            T    L             D ILN 
Sbjct: 674  RDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEPEHHPIIDEILNH 733

Query: 282  LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +  +   V SD  R+         + TGR S      QN+P         
Sbjct: 734  RTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQ-TDTGRLSSSEPNLQNIP--------- 783

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                S  +R   +      LV AD + IE R+LA ++ E   I+
Sbjct: 784  ---------------IGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIE 828

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            A+ N +D++  T    F                                           
Sbjct: 829  AYKNNQDVHTVTAKLLF------------------------------------------- 845

Query: 461  QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
               +  + +S      +  +  +       + A   K+     +   + ++ ++  V   
Sbjct: 846  ---EKEEISSEERRVGKTINFGVIYGMGAQKLARSVKITVKESKQFLEKYKQQYSLVFAY 902

Query: 521  WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             + L +           +  RR   +    +R  K                ++       
Sbjct: 903  LEKLKKQAIAKGYVETILGRRRYFELESKTIRDLKDKEP-----------EEINLQELKF 951

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSET 636
            +   +Q++R          + +Q  S DI+   M    K        ++L VHDE+V E 
Sbjct: 952  SQNDAQILRSA------ANSPIQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVFEV 1005

Query: 637  PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            P +    +   + S M    +    +PL  + +  K + 
Sbjct: 1006 PPSELEKMQQLIKSTMENAVT--LKVPLIVDIHGGKNWM 1042


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
 gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
          Length = 881

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/631 (13%), Positives = 180/631 (28%), Gaps = 128/631 (20%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++ ++L D        +    R +     LG+ +P   +    + +       +  +   
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIAF-DVLLASYLINPDENSNDLGK 418

Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   +      +   GK    +  +  +    +            LF        +
Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E I    
Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKNMGTEFSQSIKVLEEKIYGEA 528

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L+           IL+    +
Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L +A   D ++         ++TGR S      QN+P ++           
Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPARD----------- 635

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +      ++  +D + IE RVL+ I+G++   +AF +
Sbjct: 636 --------------EGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G DI+  T  K F     D+V+ + R   K     + Y               + + +  
Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG-----ISDYGLAQNIGISRKK 736

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   FE + +   +   M  +  E    + L            R     +     +
Sbjct: 737 AKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHR---------RRYLPQIHSRNFN 787

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           L +                                                   + +NT 
Sbjct: 788 LRKFAER-----------------------------------------------TAMNTP 800

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                       K+    +Q        + +  A      ++L VHDE++ E P      
Sbjct: 801 IQG---SAADIIKVAMIRMQ--------KALDEAH-LQAKMLLQVHDELIFEAPTAEMAQ 848

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +G L   +M    S    +PLK E +    +
Sbjct: 849 LGQLVPKIMDSAVSLV--VPLKVESHYGPTW 877


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/660 (14%), Positives = 174/660 (26%), Gaps = 135/660 (20%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
             A I   A  ++ +        +     SDLL Y   +       +         +  G
Sbjct: 336 MHATINGFAL-YNGKQAVYISLVDAKK-DSDLLAYFSSDMPHKYGFDVKRNLH-LAENEG 392

Query: 86  IDIPSKRWICTS-VLARTNGLPSSLKNAC---LALNFS-EHLTKMEEGKALIARFCKGSI 140
           + +    +     + A       SL           F      +   GK       K ++
Sbjct: 393 LTLN---FHDDMMLAASLVDS--SLTTTAKIIERYGFENTVSYEDVYGK-----PTKPNL 442

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                         A  +F  Y +   +      ++L    + E  L  +   +   G R
Sbjct: 443 IIDEEKQCMYACAFARNIFRLYAEITPKLQEYKMEKLY--YEMEMPLTTVLYHMEREGIR 500

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
            D+D++ ++      +  +  ++I  L      +      L   LF   G+        T
Sbjct: 501 CDIDILDRIATETMAKISEAQKEIYVLAAKEF-NINSPKQLAEVLFDDLGLPTGKKR-ST 558

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
               L          D IL     S         L + +  DG++        A++TGR 
Sbjct: 559 AAGELEKLQGKSPIIDYILEYRKLSKIYSTYAEGLKKYIQQDGKIHTIYNQS-ATQTGRL 617

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+                                 +R   +  NG  L+ +D
Sbjct: 618 SSSEPNLQNI------------------------SVRDEQGKEIRKAFLPENGCVLISSD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
              IE R+LA +A E   I+AF  G DI+  T    F+ P D+++ + R   K +   + 
Sbjct: 654 YHQIELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVNFGIV 713

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     S+ +  +                               
Sbjct: 714 --------------YGISDFGLSEQLGVSRY----------------------------- 730

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                  + + A +  +      + +                                 +
Sbjct: 731 -EAHDFIERYYAAYPKIRIYMDQIVKDCEEKGY--------------------------V 763

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618
                RR    ++            +               +Q  + D++   M +    
Sbjct: 764 ETLCGRRREIPEIHDKNHATREFGKRA---------AMNAPIQGSAADLIKLAMIHIDQM 814

Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               K    ++L VHDE++   P      +  L    M         +PL AE      +
Sbjct: 815 MKDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAMH--LQVPLTAECSIGSDW 872


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/658 (13%), Positives = 185/658 (28%), Gaps = 135/658 (20%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFE 76
            G  A  +++ I   A ++  E       +           L  L +  +    +    E
Sbjct: 328 AGFDAQKQESYIHGVAVSFSAEDTAYVPMSGFVSGRYLKVSLMELAEAGLAIWTYGLK-E 386

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLAL--NFSEHLTKMEEG-KA 130
           ++   + +       +    ++ A      +S             +      +   G K 
Sbjct: 387 QL---RAVPYS-RKTKISDVAIAAYLLDPLASDYPFDTLAAQYVKDVLILSAEEVLGTKK 442

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            ++ F      +  Y    A    +    G   K + +  R+L+       + E  L   
Sbjct: 443 EVSWFEVPEETAAMYAGEIAYTALSCGP-GLVEKLEAQGMRKLYD------EVEMPLVYT 495

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              + + G R+  D +    E + +   +L+  I +       +      L + LF    
Sbjct: 496 LCHMEEAGIRVLPDELETYGENLKEGIARLETSIYEAAGEKF-NINSPKQLGVILFEKMQ 554

Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
           +     ++    T   +L    +       IL     +       + L+  +++DGR+  
Sbjct: 555 LPGGKKTKTGYSTAADVLEKLAVDVPFVADILEYRQLTKLKSTYADGLAACIAADGRIHT 614

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T +    + TGR S      QN+P                                +R C
Sbjct: 615 TFKQT-ITATGRISSTEPNLQNIP------------------------TRIELGRQIRKC 649

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +  +G   V AD + IE RVLA ++G++  I+A+ + EDI+  T ++ F+ P+ +V+  
Sbjct: 650 FVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITASQVFHVPLSEVTPL 709

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +                    G+                              
Sbjct: 710 MRRNAKAVNF--------------GIVYGIS----------------------------- 726

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                +    +     +    ++   + G+    + L E                     
Sbjct: 727 -AHGLSEDLNISRKEAQEYIDSYYEAYPGIRGYLESLVETAKKKEYSETYY--------- 776

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR    ++               R            +Q  + 
Sbjct: 777 -----------------GRRRPMPELSSGNFMQRQFG---ERVAKNAP------IQGTAA 810

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658
           DI+   M    +          ++L VHDE++ ET +     V  +    M      A
Sbjct: 811 DIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILREEMIGATDLA 868


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/684 (12%), Positives = 180/684 (26%), Gaps = 131/684 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           IET S   +    +        +            ++       +    +     ++L+ 
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           +L +     V +++   +   +    LGIDI +  +    + +       ++ +    ++
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416

Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                             +F     D                ++      D +       
Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +   + + G   D+  + ++++ I ++   L  +I         + 
Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    + ++  ++    T   +L          D IL     S      +
Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +S D R+        A +TGR S      QN+P                     
Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627

Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R      S    ++ AD + IE RVLA I  ++   +AF NG+DI+  
Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T  K F    D+V    R   K +   + Y               L + +          
Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530
              +   + +   +          + L+           R     +     +L       
Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
            +      SA  +  +  +                                         
Sbjct: 791 AMNTPIQGSAADIIKLAMVKF--------------------------------------- 811

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
                K+ E   QA         +                E++ E P +   S    +  
Sbjct: 812 ---AHKMKETTYQA------KL-LLQVHD-----------ELIFEVPKSEVDSFSEFVEE 850

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PLK +      +
Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/665 (14%), Positives = 189/665 (28%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  D  L  +L  +T + V     ++     +    
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQDPILKDFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            G+D+ +  +  + +         +        N                 + KG   + 
Sbjct: 395 FGLDLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAI 448

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRID 202
           P   T   H+ A ++        V   +     +L  L + E+ L  +   +   G ++ 
Sbjct: 449 PERETFLEHL-ARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMS 257
            + +L++Q       +KL ++I +L      +      L   LF   G+ +         
Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPIEYTKKTKTG 566

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL+    +      +  L + + +DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYMQ-DLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +  +  G+     ++                               
Sbjct: 739 -GISRKDAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      +        R          + +Q  + DIL   M 
Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
              K          ++L VHDEIV E P +   ++  L    M +       +PL A+  
Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKKLVKQTMEEAIQ--LSVPLIADEN 880

Query: 669 EAKRY 673
           E   +
Sbjct: 881 EGVTW 885


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/684 (15%), Positives = 195/684 (28%), Gaps = 137/684 (20%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMC 68
            S   +   G         +T  A A  D+     D         +  L  +L D     
Sbjct: 340 TSRTGIIFRGT-WGRGTGELTGIALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQK 398

Query: 69  VAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTK 124
           V H       L      G D+       T++ A           L +  +     E    
Sbjct: 399 VVHEVK--GPLLAVWARGWDLAGV-VSDTALAAYLALPGQRSFDLADLAVRYLRRELKDS 455

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             E   L       S +    +   A+ ++A  +       D    +     L+     E
Sbjct: 456 AAEETQLTLDGMGPSEEDLAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGI--E 513

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +  RG   DLD + +LQ   A        +   +    + +      L+  
Sbjct: 514 LPLTFVLARMEQRGIAADLDFLHELQREFADGVAAAAAEAYAVIGREV-NLGSPKQLQAV 572

Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           LF   G+      +         L ++L+ +    L    +L     +    + ++ L  
Sbjct: 573 LFDELGLPKTKKIKSGYTTDAEALTNLLAQTGHPFLEH--LLRHRDVTRLRTV-IDGLIP 629

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V   GR+  T Q   A  TGR S      QN+P                          
Sbjct: 630 MVDDGGRIHTTFQQTIA-ATGRLSSIDPNLQNIP------------------------IR 664

Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   +  +G + L+ AD + IE R++A ++G+   I+AF +GED++    ++A
Sbjct: 665 TAEGRRIRQAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRA 724

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           ++ PI+ V  E R   K M              +     GL                   
Sbjct: 725 YDIPIEDVDPEMRRRIKAM--------------SYGLAYGLS------------------ 752

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           A + ++          A+  +  G+ +    + +          
Sbjct: 753 ------------AYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDARQTGYTET 800

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           ++                           RR    D+  D         ++         
Sbjct: 801 TL--------------------------GRRRYLPDLTSDNGQRRQMAERM--------- 825

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                +Q  + D++   M    +          ++L VHDE+V E       ++ TL   
Sbjct: 826 ALNAPIQGSAADVIKVAMLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRR 885

Query: 651 -MTKNPSWAKGLPLKAEGYEAKRY 673
            M         +PL+      + +
Sbjct: 886 EMAGAAQ--LSVPLEVSVGFGRTW 907


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/662 (16%), Positives = 182/662 (27%), Gaps = 132/662 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDI 88
           +   A A         D T+ +      L  +L D      AH+     +     LG  +
Sbjct: 419 VAGIALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALA-ELGFTL 477

Query: 89  PSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                  T++ A           L +  L     E           +             
Sbjct: 478 AGVT-SDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLD-VEVEGVEES 535

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                + V+A  +       D +  R    RL+   D E  L  +   +   G   D + 
Sbjct: 536 AEAEVDVVRARAVGELADALDGDLERRSAARLLR--DIELPLLTVLAGMERAGIAADAEY 593

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLK 262
           +  LQ     E  K+ E   ++      +      L+  LF   G+           T  
Sbjct: 594 LADLQSQYGTEVTKVVEAAHEIVGRPF-NLGSPKQLQQILFEELGLPKTKKIKTGYTTDA 652

Query: 263 SILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
             L+         L   L+ +R  +       + +L   +   GR+  T     A  TGR
Sbjct: 653 DALAWLATNSEHPLIPTLLRHRDVARLK--TVVESLLPMIDDAGRIHTTFNQMIA-ATGR 709

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378
            S      QN+P                                +R   +   G   L+ 
Sbjct: 710 LSSTDPNLQNIP------------------------IRTAEGRQIRRAFVVGPGYETLLT 745

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++G+   I+AFA+GED++    A+AFN P+ +V  E R   K M   
Sbjct: 746 ADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAM--- 802

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                      +     GL                                   A +  +
Sbjct: 803 -----------SYGLAYGLS------------------------------AYGLATQLGI 821

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    +A+ A+  GV    + + +           +                    
Sbjct: 822 HPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETIL-------------------- 861

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    D+  D S       ++              +Q  + DI+   M    
Sbjct: 862 ------GRRRYLPDLTSDNSQRRQMAERM---------ALNAPIQGSAADIIKIAMLGVD 906

Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671
           +          ++L VHDE+V E           L    M     +   +PL+       
Sbjct: 907 RGLRDAGLRSRLLLQVHDELVLEIAPGERERAEALVRAEMANA--YTMSVPLEVSVGSGH 964

Query: 672 RY 673
            +
Sbjct: 965 TW 966


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLAKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----- 251
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQVENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLSLEYT 551

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNY--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/602 (15%), Positives = 161/602 (26%), Gaps = 138/602 (22%)

Query: 83  TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
             G+ +    +  T +             L         S                   +
Sbjct: 360 AKGVGVRGAHF-DTYLAGYLAKPGLGSYDLDALATERGIS----------------DVEA 402

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
             + P     A      +          +A            + E  L  +   +   G 
Sbjct: 403 SHADPVVREAARRAALVRALAPRL----DAELREMGLSRLYYEVELPLADVLAEMERVGM 458

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDM 256
            +D   + ++   I +   +L+E I +       +      L   LF   G+        
Sbjct: 459 PVDARTLEEVGREIERRIAELEEAIFEDVGHPF-NIGSPKQLSEVLFEELGLPPVRRTKT 517

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L    +     + I+     +      +  L + V  DGR+  TL     + 
Sbjct: 518 GYSTDAKVLQQLALEHPIAERIIAWRELAKLKGTYVEGLLKLVGEDGRIHTTLN-QTTTA 576

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                +R    AS G+ L
Sbjct: 577 TGRISSDSPNLQNIP------------------------VRTETGMRIRDAFTASPGRLL 612

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           VVAD + IE R+LA ++ E   ++AF NGEDI+  T A+ F+   + V+ E R   K++ 
Sbjct: 613 VVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESVTPELRRRAKMVN 672

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L     +                                 
Sbjct: 673 FGILYG-----ISGYGLATRLGNVHPA--------------------------------- 694

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                  +   + +  +H  V +  +        +                         
Sbjct: 695 -----EADRYIQRYFERHPRVTEFIRKSLAEAEELGYATTLF------------------ 731

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    +++     +        R            VQ  + DI+   M +
Sbjct: 732 --------GRRRYVPELRNKNKNVR---KLGERIAFNAR------VQGSAADIIKVAMVD 774

Query: 617 ATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671
                   G D+++ VHDE+V +        V  L    M          PL+ E    +
Sbjct: 775 LAPRLGPLGADMLMQVHDELVFDVDRDRVEEVAALAAERMVAAYDLDP--PLEVEVKAGE 832

Query: 672 RY 673
           R+
Sbjct: 833 RW 834


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 91/627 (14%), Positives = 169/627 (26%), Gaps = 144/627 (22%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
                   H +     +     GI++       T++ A          +L +        
Sbjct: 332 SSDAPKYLHEAKAAWHMLAG-RGIELRGIA-HDTALAAYLLRPGQRTYALTDVSQRH--- 386

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--L 177
                      L       +      D             G   +   E T +L +    
Sbjct: 387 -----------LQKSLGAATEQLSILDENP-----LVDQAGAIMELAAELTAQLQEIDSF 430

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
              +D E  L  +   +   G  +D D++   ++   ++  + +    +L      +   
Sbjct: 431 ELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNS 490

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL 292
              L+  LF    +     ++    T    +            D +L            L
Sbjct: 491 PKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT-L 549

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L + +  DGR+  T      + TGR S      QN+P                     
Sbjct: 550 EGLIKTIQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP--------------------- 587

Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                  A   +RS  +   G   L+ AD + IE RV+A ++ +   I+A+  GED++  
Sbjct: 588 ---VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNY 644

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             +K F+ P+D+V+ E R   K M                    GL              
Sbjct: 645 VGSKVFDVPVDEVTPELRRRVKAMSYG--------------LVYGLS------------- 677

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                + +  +     + + +++  +  GV +   ++       
Sbjct: 678 -----------------AFGLSQQLGIPAREAKEIMESYFERFGGVKRYLDEVVVQARKD 720

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                                             RR    ++  D      A     R  
Sbjct: 721 GYTSTVF--------------------------GRRRYLPELNSDN---RVARENAERAA 751

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                     +Q  + DI+   M    K        ++L VHDE+V E        V  +
Sbjct: 752 ------LNAPIQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRI 805

Query: 648 CSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               M K       +PL+      K +
Sbjct: 806 LEREMDKAIE--LTVPLEVSVGVGKNW 830


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/624 (12%), Positives = 155/624 (24%), Gaps = 128/624 (20%)

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             +   +    +  ++     L  +     I         + A      ++  +      
Sbjct: 429 KPFWASKDHRKLFFDAK-SLWLLARREDTVIEGID-GDGLLGAYLLDPLANRYSLAR--- 483

Query: 118 FSEHLTKMEEGKALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                     G  +     +  +  +          H+          +      R    
Sbjct: 484 ----SAHDWIGWKVDTEAGRSVLPPEEGARAAAALFHMTPVMEARLGEEGLCALYR---- 535

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 D E  L  +   +   G +++  ++ ++   +  + ++L  DI  L  G   + 
Sbjct: 536 ------DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLA-GESFNI 588

Query: 236 RQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             T      LF   G+           T   +L            +L            +
Sbjct: 589 NSTQQFGKILFEKLGLPVIKRTKTGYSTDVEVLEELADRHPIVPKVLEYRQLMKLKSTYV 648

Query: 293 NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
             L   +   DGR+  +      + TGR S      QN+P                    
Sbjct: 649 EGLLPLIDGEDGRIHTSFNQAV-TATGRLSSTEPNLQNIP-------------------- 687

Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R    A  +   L+ AD + IE R+LA ++G+     AFA  +DI+ 
Sbjct: 688 ----VRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHT 743

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T ++ F  P++ V+ E R   K +   + Y               L + +         
Sbjct: 744 RTASEVFGVPMENVTSEMRRRAKAVNFGIVYG-----ISDFGLSRDLGVLRAEARQYIDG 798

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            F+ +   + +   +  +         L+G          R +   +    K        
Sbjct: 799 YFDRYSGVKGYIDEIIAEARRQGYVTTLLGR---------RRRLPDLFVKNKIRQNFGER 849

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                                                  +    
Sbjct: 850 AAMNTPIQGTA----------------------------------------ADIIKAAMV 869

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCS 649
           R  G          ++   L   M           L VHDE++ E P      +   +  
Sbjct: 870 RIPGL---------LAAKGLKTRML----------LQVHDELIFEAPKEELSEAAALIRE 910

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
            M +       +PL  +      +
Sbjct: 911 TMEQTIR--LDVPLTVDVKTGPNW 932


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/671 (14%), Positives = 182/671 (27%), Gaps = 157/671 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQKF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAEGYEAKRY 673
           L A+    + +
Sbjct: 866 LVADENTGQTW 876


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 189/662 (28%), Gaps = 165/662 (24%)

Query: 31   TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--DI 88
               A A     V+     +       L ++L     +     +  +     ++  I  DI
Sbjct: 496  VAFAVAVAGCEVQYSGPVQG------LARHLASAKRI-----ATPDVKALLRSHAIWRDI 544

Query: 89   PSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            P  RW    + A     P                    +    G  L+A      +    
Sbjct: 545  PGDRWFDLGLAAYLLD-PEERDYGWPRLAARWGDMLDRSTDNPG--LLALEMAQGMAGRL 601

Query: 145  YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               +    ++                             E  L  +   + + G  +D  
Sbjct: 602  AGASLDTLMRTL---------------------------ELPLVPVLADMEEAGIAVDRT 634

Query: 205  LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGT 260
                  + +  E  ++ +++ K   G   + R    L   LF   G+  V  +      T
Sbjct: 635  AFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGGQATT 693

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             +  L   +      DLIL+           L  L + V + GR+  T     A+ TGR 
Sbjct: 694  SQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAGRIHSTFNQL-ATATGRL 752

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
            S      QN+P                          G     +RSC  A+ G  LV AD
Sbjct: 753  SSSNPNLQNIP------------------------ARGDLGRRMRSCFTAAEGNLLVSAD 788

Query: 381  LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
             + IE RVLA ++ +   + AF  G DI+  T    ++T  + V+ +QR   K +     
Sbjct: 789  YSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF--- 845

Query: 441  YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                           G+                                 +   + ++  
Sbjct: 846  -----------GLIYGMGP------------------------------QKLGQELRITV 864

Query: 501  TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +   + + ++ Q +   + ++                                    
Sbjct: 865  NEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTL----------------------- 901

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619
               + RR +  ++  + +      SQ  R+          ++Q  + DI+   M  A   
Sbjct: 902  ---AGRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDD 949

Query: 620  -----NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS--WAKGLPLKAEGYEAK 671
                     ++L VHDE++ E P+    +    L  LM++         +PL  +    K
Sbjct: 950  PVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGK 1009

Query: 672  RY 673
             +
Sbjct: 1010 DW 1011


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAATFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 193/660 (29%), Gaps = 165/660 (25%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF----ERILFKK-TLGID 87
            A A  D+ +     T    +   LL+             + F    +            
Sbjct: 357 LAIAVGDKEIVYTGLTP--KLVDRLLK-------------AKFVIAPDVKALLHTHADWG 401

Query: 88  -IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            IP ++W    + +                 + +   +      L          + P  
Sbjct: 402 RIPPEKWFDLGLASYLLEPED------RDYGWPKLSARWGTALGL--------SAANPGL 447

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                  Q  +        ++  T EL             L  +   +   G ++D + +
Sbjct: 448 LALTMTDQLLKRLSGAHLVELMKTLEL------------PLIPVLADMESAGVKLDAEAL 495

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLK 262
               E + ++  ++ ED+ +   G   + R    L   LF    + +   +      T +
Sbjct: 496 ADFLEEVQKDLDRITEDVYREAQGPF-NIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQ 554

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D +L            L  L   +  DGR+R T     A+ TGR S 
Sbjct: 555 DVLEKLSGHHPVVDALLEFRKLEKLRSTYLEPLPRLMGGDGRIRTTFNQL-ATATGRLSS 613

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                          G     +R+C  A  GKKL+ AD +
Sbjct: 614 SNPNLQNIP------------------------VRGALGRRMRACFTAPEGKKLISADYS 649

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++ ++  + AF  G DI+  T +  F+ P  +++ +QR   K +       
Sbjct: 650 QIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTINFG---- 705

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+                                 + A + K+  + 
Sbjct: 706 ----------LIYGMGP------------------------------QKLAQELKIPLSE 725

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  + QG+   ++++ E                                    
Sbjct: 726 AKAFMARYFERLQGLKHFYENVEEMAREQGYVTTL------------------------- 760

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--- 619
            + RR    D++ +     +   +              ++Q  + DI+   M        
Sbjct: 761 -AGRRRPLPDIQAESQQARSLARRQ---------AINTLIQGSAADIIKLAMLAVHGDET 810

Query: 620 ---NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS--WAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E P+         + +LM           +PLKA+   A+ +
Sbjct: 811 LRTLDAKLLLQVHDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKADWGAAENW 870


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 73/508 (14%), Positives = 138/508 (27%), Gaps = 117/508 (23%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L    + E    +    +  RG  +D   + +  + +    ++L E I K       + 
Sbjct: 16  MLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAGEEF-NI 74

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF    ++    ++    T   +L            IL     +       
Sbjct: 75  NSPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTYA 134

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L+  +  D R+ G       + TGR S      QN+P                     
Sbjct: 135 DGLANYIGDDERIHGKFNQT-ITATGRISSTEPNLQNIP--------------------- 172

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R   +   G   V AD + IE RVLA ++ +   I A+   +DI+  T
Sbjct: 173 ---ARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHART 229

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            ++ F  PID+VS  QR   K +   + Y               L + +          F
Sbjct: 230 ASEVFGVPIDQVSSIQRRDAKAVNFGIVYG-----LSAFGLSQDLKITRKQAQEYIDKYF 284

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
           E + + + +     ++  E      +      +           +               
Sbjct: 285 ETYPKVKKYLNREVEKGKEEGFVTTMFQRIRPI---------PELKSSNFMQRN------ 329

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                                     G+   +N+          
Sbjct: 330 -----------------------------------------FGERVAMNSPIQG------ 342

Query: 593 YGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                        + DI+   M          K    ++L +HDE++ E  D+    V  
Sbjct: 343 ------------SAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKG 390

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +    M         +PL  + +    +
Sbjct: 391 ILTREMMSAAK--LSVPLSIDIHTGNSW 416


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 175/654 (26%), Gaps = 143/654 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
              AW D+                  + L     +       ++     +    LGID+P
Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLP 389

Query: 90  SKRWICTSVLARTNG--LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +  +  + +          +++        +          GK            + P  
Sbjct: 390 TASF-DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKR--------AIPEK 440

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               +H+          +  +        +L  L + E  L  +   +   G  +  + +
Sbjct: 441 NVLLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETL 500

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTL 261
             ++     E + L ++I  L  G   +      L + LF   G+             T 
Sbjct: 501 QDMERANEIELQALTQEIYDLA-GEAFNINSPKQLGVILFEKLGLPLSATKKTKTGYSTA 559

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L            IL     +      +  L +++S DG++         ++TGR S
Sbjct: 560 VDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRYLQ-DLTQTGRLS 618

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 619 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSD 654

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 655 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 714

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L                                        + 
Sbjct: 715 VY-----GISDFGLANNL---------------------------------------GIS 730

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             A +   + +  ++ G+      +                                   
Sbjct: 731 RKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFH-------------------- 770

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+      + +      R          + +Q  + DIL   M +  +
Sbjct: 771 ------RRRELPDINSRNFNIRSFA---ERTAI------NSPIQGSAADILKVAMIHLDQ 815

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                     ++L VHDEIV E P+    ++  L    M         +PL A+
Sbjct: 816 ALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVKETMESAIE--LSVPLVAD 867


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 143/657 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQKFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           I++P+  +    +          + L            L   +E         KG+  + 
Sbjct: 388 IELPAASF-DARLAKYLLSTVEDNELATIARLYG-QTILLTDDEVYG------KGAKRAL 439

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P       H+          +  ++       +L  L + E+ L  +   +   G +++ 
Sbjct: 440 PEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVER 499

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSE 258
           + +  +Q    +  + L ++I  L      +      L   LF   G+            
Sbjct: 500 ETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGY 558

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL     S      +  L EA++SDG++         ++TG
Sbjct: 559 STAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIASDGKIHTRYVQ-DLTQTG 617

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                                +R   +       L+
Sbjct: 618 RLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWADSVLL 653

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
            +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R   K + 
Sbjct: 654 SSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVN 713

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     + N                               
Sbjct: 714 F--------------GVVYGISDFGLANN------------------------------L 729

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +   A +   + +  +  G+    + +                                
Sbjct: 730 GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH----------------- 772

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+      +        R          + +Q  + DIL   M N
Sbjct: 773 ---------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADILKVAMIN 814

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
             +          ++L VHDEIV E P+    +V  L    M      A  +PL A+
Sbjct: 815 LDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
 gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
          Length = 885

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/631 (14%), Positives = 186/631 (29%), Gaps = 126/631 (19%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L ++L ++       +     +  K+ LGI+  S  +    +++       +  +   
Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR-LGIEAESIDF-DLLLVSYLLNNTDNSNDLGQ 422

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                         K+    + KG+      D T   H+++      + K+ +    +  
Sbjct: 423 L----CQKQGYFGVKSDDEVYGKGAKKEICADETFFEHLRSKVFAIAFLKQKLMQKLKDN 478

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            +     + ER L ++   +   G + D + +  +     ++   L+  I +   G   +
Sbjct: 479 SQDHLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLIYQEA-GETFN 537

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L   LF   G+     ++    T   +L       +  +++L R  +   +   
Sbjct: 538 INSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRGNDIVDNVLLYRQFAKLKST-Y 596

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L + +  D ++         + TGR S      QN+P                    
Sbjct: 597 IDGLIKVMDQDEKVHTRYTQTL-TTTGRLSSVEPNLQNIP-------------------- 635

Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   I    G ++  +D + IE RVLA I+ ++   KAF +  DI+ 
Sbjct: 636 ----VRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQKAFKDDFDIHA 691

Query: 411 TTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
            T  K F     D+V+   R   K +                    G+     +Q++   
Sbjct: 692 NTAMKIFGLSSPDEVTPNMRRQAKAVNF--------------GIVYGISDFGLAQSI--- 734

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                             +   + +     GV +   ++ E   
Sbjct: 735 ---------------------------GCRRDQAKTFMETYFESFPGVKRYMTEIVELAR 767

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                      RR     R                           + + +NT       
Sbjct: 768 NQGYVETLFKRRRYLEGIRSKNFNQ-----------------RSFAERTAMNT------- 803

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M          +    ++L VHDE++ E P+     
Sbjct: 804 -----------PIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPV 852

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  L  S+M         +PLK E    K +
Sbjct: 853 LEKLVPSVMDSAVK--LDVPLKVESGHGKTW 881


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/670 (13%), Positives = 177/670 (26%), Gaps = 135/670 (20%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
           A    +     A                       + L  +L D   + V H+S   R+L
Sbjct: 298 AMMGALVGVGLAPAPGEAFYVPLVASDGGLGEGALALLRGWLEDSARLKVVHDSKRLRVL 357

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLA-LNFSEHLTKMEEGKALIAR 134
             +  G+ +         + +         P  +     A L  +    K   G    AR
Sbjct: 358 LARY-GVSLSGV-VADPRLESFLVDPTGLVPHRIDQLVKAFLQRTVPPAKSVLGSGKKAR 415

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                  S               ++ +  +R  E       +L  L + +  L  +  T+
Sbjct: 416 RFAELAASVTGAWACQRADVVVTMWPQIRERLEEV-----DQLPHLQEVDLPLSEVLATM 470

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R++   + ++         +L+ +I +       +      L + LF    +   
Sbjct: 471 ELAGVRVEPTELEEMSAEFRATLLQLEAEIWRQAGREF-NVASPKQLGVVLFEELNLPVI 529

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
                   T   +L           L+L     +         L  A++   GR+  T Q
Sbjct: 530 KRTKTGYSTAAEVLERLTREHPIAGLLLQHRKLAKLLTTYTEVLRAAINPVTGRVHPTFQ 589

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR        Q  P                                +R   I 
Sbjct: 590 QTYA-ATGRLISTNPDIQKTP------------------------VRTPEGKRIRRAFIP 624

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           + G +++ AD + IE R+LA  + +   ++AFA  ED++  T A+ F    + V+  QR+
Sbjct: 625 APGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRS 684

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           + K +  A                                                    
Sbjct: 685 VAKTVNFATI--------------------------------------------YGQGAT 700

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
               +  L  T  +     +   + GV +      EG          +            
Sbjct: 701 ALGQRLGLKRTEAKGYISRYFQAYAGVREWLDRTIEGALASGYVETLL------------ 748

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR V  ++  + + +     ++              +Q  + D+ 
Sbjct: 749 --------------GRRRVIPELSSNSAMVRQVGMRM---------AANTPIQGSAADLC 785

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPL 663
              M    K          ++L +HDE+V E       +    +   M         +PL
Sbjct: 786 KLVMLTLAKRFQTRGLQTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVGD--LRVPL 843

Query: 664 KAEGYEAKRY 673
           +        +
Sbjct: 844 RVHIGVGANW 853


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQTENEKTLESLTQEIYDLAGQEF-NINSPKQLGTVLFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 169/667 (25%), Gaps = 135/667 (20%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQ----------SAMPSDLLQYLRDETVMCVAHNSLFER-- 77
           +   A A             Q                L   L    +   AH    +R  
Sbjct: 341 VVGLALA-GGGRAFYLPLRHQYLGAPAQLSAEEAAGALRPLL-SGELPKHAH----DRKG 394

Query: 78  --ILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALI 132
                 + LG+ +       T + +R         +L +          L +   G    
Sbjct: 395 VQHALAQ-LGLAL-GGPGADTDLASRLLLPTRREHALADVARE-RIGCELPRDPSGGDAA 451

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
            +  +  ++    +       Q      +     +E   E    L    D ER L  +  
Sbjct: 452 RKSERVPVEGLEVERVGEWAAQCAASLLDLAPA-LERALESEGLLPLYRDVERPLVPVLC 510

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +D   +  +     +  + L+  I         +   T  L   LF    + 
Sbjct: 511 EMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHPF-NIASTRELAQVLFTELALP 569

Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
               +     T + +L           L+L   A +      ++ L + V   DGR+  T
Sbjct: 570 VLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTT 629

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
               GA  TGR S      QN+P                             S  +R+  
Sbjct: 630 FHQAGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRAAF 664

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G +L+ AD + IE R+LA  + +   ++AF   ED++  T A+ F     +V+ + 
Sbjct: 665 VAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDM 724

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R I KV+   + Y               LDL            F  +     +     + 
Sbjct: 725 RRIAKVLNFGIAYG-----LSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVED 779

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVP 547
                    L G A              +      L        +      +A  +  V 
Sbjct: 780 ARATGESRTLFGRA---------RAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVA 830

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
            + +                                     R R                
Sbjct: 831 MIRVHD----------------------------ALAGDARRARL--------------- 847

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666
                 +         +VL        E P+     V  L    M         +PL  E
Sbjct: 848 ------LLQVHDE---LVL--------EVPEDELAPVEALVRREMGGAAQ--LKVPLDVE 888

Query: 667 GYEAKRY 673
                 +
Sbjct: 889 VGVGHSW 895


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus Y714s Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V  D +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVSGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/638 (15%), Positives = 187/638 (29%), Gaps = 155/638 (24%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLP---SSLKN- 111
           L  ++  E      H++     +F    G DI  +     T++ A           L + 
Sbjct: 366 LKVWVESED-PKYLHDAK---TVFHMLKGRDITLRGIAHDTAIAAYLLRPGQRTYELHDV 421

Query: 112 ----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                   LN       +    +L+      +          +  ++    +  Y     
Sbjct: 422 YQRHLQRQLNLGGDQLSLLGDTSLVD----SAAAVLELAEELSAQLRGIDSYDLYA---- 473

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         D E  L  +   + + G  +D+D++    +    +  +++E+  +L
Sbjct: 474 --------------DLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQL 519

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SILSHSNITQLAKDLILNR 281
            D    +      L + LF    +     ++    T       L+ +N       L+ +R
Sbjct: 520 VDEPSLNLSSPKQLSVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHR 579

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                 +   +  L +AV+ +GR+  T +   AS TGR S      QN+P          
Sbjct: 580 EYQKMKST--IEGLIKAVADNGRIHTTFKQTVAS-TGRLSSTDPNLQNIP---------- 626

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIK 400
                             A   +RS      G   L+ AD + IE RV+A ++ +   I+
Sbjct: 627 --------------VRTEAGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIE 672

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A+  GED++    ++ F+ PID+V+ E R   K M   L                GL   
Sbjct: 673 AYREGEDLHNFVGSRVFDVPIDQVTPELRRRVKAMSYGLV--------------YGLSAY 718

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S  +                               +     + + +++  +  GV   
Sbjct: 719 GLSNQLS------------------------------ISAGEAKSIMESYFERFGGVKSY 748

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             ++ E                                       RR    ++  D    
Sbjct: 749 LDNVVEQARRDGYTSTVF--------------------------GRRRYLPELTSDN--- 779

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSET 636
             A     R            +Q  + DI+   M    +        ++L VHDE+V E 
Sbjct: 780 RVARENAERAA------LNAPIQGSAADIIKVAMIRVDRALESFNSRVLLQVHDELVVEI 833

Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  V  +    M    +    +PL+        +
Sbjct: 834 APGELAEVREIVEREMDSAITLL--VPLEVSAGTGVNW 869


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/681 (15%), Positives = 192/681 (28%), Gaps = 153/681 (22%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D T         L  +L D       H +          
Sbjct: 365 AYDADATALAIVAADGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEAK-----LAMH 419

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL +  L     E              
Sbjct: 420 ---DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPA---QQQL 473

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L  L   E  +  +   +
Sbjct: 474 SLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVLAEM 531

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  +D+D + +LQ   A   +    +      G   +      L+  LF    +   
Sbjct: 532 EHTGIAVDIDQLRQLQSEFADLIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELAMPKT 590

Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
             ++    T    L              +L    ++   +  ++ L  +V+SDGR+  T 
Sbjct: 591 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 649

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                            A   +R   +
Sbjct: 650 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 684

Query: 370 A---SNGK-------KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                 G        +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF+ 
Sbjct: 685 VESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDV 744

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           PID+V+ + R   K M   L                GL     +  +K            
Sbjct: 745 PIDEVTPDLRRRVKAMSYGL--------------AYGLSAYGLAAQLK------------ 778

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +     ++    + A+  G+    +D+ +             
Sbjct: 779 ------------------ISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVF- 819

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     RR    ++      +  A  +             
Sbjct: 820 -------------------------GRRRYLPELDSSNRNVREAAERA---------ALN 845

Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
             +Q  + DI+   M +  +          ++L VHDE++ E  D    ++  L    M 
Sbjct: 846 APIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMG 905

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
               +A  +PL+      + +
Sbjct: 906 SA--YALDVPLEVSVGYGRSW 924


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 189/672 (28%), Gaps = 144/672 (21%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D +         L  +L D       H +          
Sbjct: 364 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 418

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL +  L     E   +          
Sbjct: 419 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENP---QQQQL 472

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L+     E  +  +   +
Sbjct: 473 SLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 530

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G  +DLDL+ +LQ   A + +    +      G   +      L+  LF    +   
Sbjct: 531 ENAGIAVDLDLLSELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELQMPKT 589

Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
             ++    T    L              +L    ++   +  ++ L  +V+SDGR+  T 
Sbjct: 590 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 648

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                            A   +R   +
Sbjct: 649 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 683

Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
             +G  +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF  PI++V+ E 
Sbjct: 684 VGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGEL 743

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K M                    GL                               
Sbjct: 744 RRRVKAMSYG--------------LAYGLS------------------------------ 759

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               + + K+     +    A+ A+  GV      + E           +          
Sbjct: 760 AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVL---------- 809

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    ++      +  A  +               +Q  + D
Sbjct: 810 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 844

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           I+   M    K          I+L VHDE++ E        +  L    M         +
Sbjct: 845 IIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 902

Query: 662 PLKAEGYEAKRY 673
           PL+      + +
Sbjct: 903 PLEVSVGYGRSW 914


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/660 (14%), Positives = 182/660 (27%), Gaps = 150/660 (22%)

Query: 33  CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            A+AW +          D   +   P +                  ++     +    L 
Sbjct: 345 VAFAWGNSEKIYVSKNLDLLTEMKFPEN-----------------TYDFKKNRVLLSHLN 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           I++P  ++    +           K        +     T  E        F KG+  + 
Sbjct: 388 IELPLVKF-DAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI-------FGKGTKLAL 439

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P D    +H+          K  + A     ++   LSD E  L  +   +   G  +  
Sbjct: 440 PDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQ 499

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + + ++     ++   L  +I  L      +      L + LF    + +   ++    T
Sbjct: 500 NTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYST 558

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL     +      +  L   ++ DG++         ++TGR 
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRL 617

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   + S    L+ +D
Sbjct: 618 SSVDPNLQNIP------------------------VRLEEGRKIRKAFVPSQDSLLLSSD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA I+ ++  I AF +G DI+ +T  + F                       
Sbjct: 654 YSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGI--------------------- 692

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                                  +    T+      +A +  +         A    +  
Sbjct: 693 ----------------------EKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITR 730

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +   + +  ++ G+    +++                                   +
Sbjct: 731 KDAKNYIETYFERYPGIKTYMENIVREARDKG--------------------------FV 764

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
              S RR    D+      +        R          + +Q  + DIL   M N  K 
Sbjct: 765 ETMSHRRRKIPDINARNFNVRGFA---ERTAI------NSPIQGSAADILKIAMINLDKA 815

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDEI+ + P      +  L    M +    A  +PLK +    K +
Sbjct: 816 LTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVDDNTGKTW 873


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/689 (16%), Positives = 200/689 (29%), Gaps = 153/689 (22%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMC 68
           S   +  VG    A  A  T  A    D   +  D    T +    + L  +L D     
Sbjct: 341 SRFGVAVVGTHK-AYDADATALAIVAADGDGRYIDTSTLTPEDE--AALASWLADPGPPK 397

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFS 119
             H +             D+  + W        T++ A          +L +  +     
Sbjct: 398 ALHEAK-----LAMH---DLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHR 449

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E   +  E             D       +   ++A  +       D E  R     L  
Sbjct: 450 ELRAETPE---QQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARI--DSLSL 504

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           LS  E  +      +   G  +DL ++ +LQ   A + +    +      G   +     
Sbjct: 505 LSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDA-AEAAYSVIGKQINLGSPK 563

Query: 240 ALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            L+  LF    +                L+S+   +    L    +L    ++   +  +
Sbjct: 564 QLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQH--LLAHRDATRLKVT-V 620

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           + L  +V+SDGR+  T     A  TGR S      QN+P                     
Sbjct: 621 DGLLNSVASDGRIHTTFNQTIA-ATGRLSSTEPNLQNIP--------------------- 658

Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                  A   +R   +   G  +L+ AD + IE R++A ++ +   I+AF  GED++  
Sbjct: 659 ---IRTEAGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSF 715

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             ++AF+ PID+V+ E R   K M                    GL              
Sbjct: 716 VASRAFSVPIDEVTPELRRRVKAMSYG--------------LAYGLS------------- 748

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                A + K+     ++  + +  +  GV    +D+ +     
Sbjct: 749 -----------------AYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKD 791

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                 +                           RR    ++      +  A  +     
Sbjct: 792 GYTSTVL--------------------------GRRRYLPELDSSNRQVREAAERA---- 821

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645
                     +Q  + DI+   M N  +          I+L VHDE++ E  +     + 
Sbjct: 822 -----ALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELE 876

Query: 646 TLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            L    M         +PL+      + +
Sbjct: 877 QLVREHMGNAYP--LDVPLEVSVGYGRSW 903


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 178/664 (26%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQDFLSKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +       QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF    +     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMRLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLIKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +   A +   + +  +  G+    + +                         
Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  +          ++L VHDEIV E P+    +V  L    M      A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/587 (13%), Positives = 155/587 (26%), Gaps = 130/587 (22%)

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               V A          + ++            K++EG     + C  +  +        
Sbjct: 404 FDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEG----TKSCYEAYTAYACVPVLE 459

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
             ++   +F  +                   + E  L      +   G +++ + + +  
Sbjct: 460 KKLEENGMFCLFN------------------EIEMPLVFTLYDMEQAGVKVEGEELKRYG 501

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
           E +     +L+++I ++      +      L + LF    +     ++    T   +L  
Sbjct: 502 EELGARIVELEKEIYEMAGEEF-NINSPKQLGVILFEKLEMPHAKKTKTGYSTAADVLDK 560

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                     IL     +       + L+  +  DGR+         + TGR S      
Sbjct: 561 LAPEYPIVAKILEYRQLAKLKSTYADGLANYIGMDGRIHSKFNQT-ITATGRISSTEPNL 619

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R   +   G   V AD + IE R
Sbjct: 620 QNIP------------------------VRMELGRLIRKVFVPKEGCVFVDADYSQIELR 655

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA  +G++  I+A+    DI+  T ++ F+ P D+V+  QR   K +   + Y      
Sbjct: 656 ILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYG----- 710

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             +      L + +          FE +   ++          E    + L G    +  
Sbjct: 711 ISSFGLSQDLSISRKEAAQYIEHYFESYPGIKTFLDKCVSDAKEKGYAETLYGRRRPM-- 768

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                    +             V                                   +
Sbjct: 769 -------PELKSSNFMQRSFGERVAMNAPIQGTAADII---------------------K 800

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +    V  +    N                            L   M           L 
Sbjct: 801 IAMIHVNEELKKRN----------------------------LKSRMI----------LQ 822

Query: 628 VHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E  +T    V  +    M         +PL  + +  K +
Sbjct: 823 VHDELLIEADETELEEVQQILQDKMEHAAELL--VPLSVDMHTGKNW 867


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 181/662 (27%), Gaps = 151/662 (22%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF 80
           +        I   + ++  E     D+         +        ++ V     ++    
Sbjct: 331 LHIEIVDNSIGSISLSYRKEVFFYIDKDHVDDALEFIKPIFSLGYILKVI----YDVKTL 386

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            K +  ++    +    V++                + S            I+   + SI
Sbjct: 387 LKIIP-NLDIVAFNDIMVMSYVLNPG--------VHDHSLQNI--------ISYNVEQSI 429

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            +       AN +   +L  +    D      L+         E+ L  +   +   G  
Sbjct: 430 TNM----NAANLLLLHELLRKSLFVD-----RLYTV---YERVEKPLIRVLDNMEKIGVL 477

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---- 256
           +++D++  L    +++   L+ +I KL+     +   +  L   LF   GI         
Sbjct: 478 VNVDVLKTLSATFSEKINMLESEIYKLSGAEF-NIASSKQLGNILFDKMGIKKGKKLSSG 536

Query: 257 SEGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGA 314
           +  T   +LS          D IL     +       + L +  +S+ GR+        +
Sbjct: 537 NYSTDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYTDVLEKQKNSNSGRVHTFYSM-VS 595

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P                              + +R   IA  G 
Sbjct: 596 TATGRLSSSNPNLQNIP------------------------VRSEEGNSIRRAFIAKKGY 631

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           KL+ AD + IE R++A IA       AF   +DI+  T  + FNT               
Sbjct: 632 KLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIFNTE-------------- 677

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                                           K         ++ +  +         A 
Sbjct: 678 --------------------------------KLDKNLRRRAKSINFGIIYGMSAFGLAK 705

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
           +  +  +        +   +  +    +++                              
Sbjct: 706 QLSISRSEASTYINNYFRSYPEIQSYMENIKAYAKTHGYTRTIF---------------- 749

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      R+    D+  D     TA +   R             Q  S DI+   M
Sbjct: 750 ----------GRKCFVKDINSDNV---TARNFSERAAINAPL------QGTSADIIKMSM 790

Query: 615 KNATKN--GYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
            +         ++L VHDE++ E  +     +V  +  +M         +PLK +     
Sbjct: 791 IHLFDKLKNGSLILQVHDELLFEILEEQVDDAVKIIREVMENIVK--LSVPLKVDFNIGD 848

Query: 672 RY 673
            +
Sbjct: 849 NW 850


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 198/659 (30%), Gaps = 135/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A  +      D T         L ++L DE +  V H+         ++ G  +   
Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLKKALHGL-RSRGWRLAGL 413

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             + T + A           L +  L     E  ++  EG   ++     S +       
Sbjct: 414 -VMDTELAAYLVRPGQRSFKLDDLVLRYLGKELRSEGVEGDGQLSLLDTDSDNEIVRREL 472

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
               V+A  +         E        L+   D E  L  +   +   G  +D+D++ +
Sbjct: 473 ----VRARAVLELSSALSAELAAIGATTLLA--DIELPLLSMITDLEAAGIAVDIDVLTE 526

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSIL 265
           L+   A   K+  E       G   +      L++ LF   G+     ++    T    L
Sbjct: 527 LEAHYANRVKQATEQAY-SVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAL 585

Query: 266 SHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
                       + L+ +R A+   +   +  L +AV+ DGR+  TL     + TGR S 
Sbjct: 586 QTLYEKTEHPFLQYLLEHRDATKLRST--VEGLIKAVADDGRIHTTLHQT-ITATGRLSS 642

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P                                +R   +   G  +L+ AD 
Sbjct: 643 VDPNLQNIP------------------------VRTDEGRRIREAFVVGEGYAELMTADY 678

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++ ++  I+AF +G D +  T A+ F+    +V+ EQRA  K M   L  
Sbjct: 679 SQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMNYGL-- 736

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         GL                                   + + ++   
Sbjct: 737 ------------AYGLS------------------------------AYGLSQQLRISTE 754

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
               +   +  +  GV      +        +EG + +                      
Sbjct: 755 EARALMDEYFLRFGGVRDYLHSV---VERAAKEGYTETI--------------------- 790

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               RR    D+            ++              +Q  + DI+   M    +  
Sbjct: 791 --FGRRRYLPDLTSTNRQRREMAERM---------ALNAPIQGSAADIIKVAMLGVHRAL 839

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E  D  +  V  L    M         +PL+      + +
Sbjct: 840 AEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGSAYE--LSVPLEVSVGYGRSW 896


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/648 (12%), Positives = 175/648 (27%), Gaps = 135/648 (20%)

Query: 45  WDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           W  ++   + S  ++ + L +  +     N+    +   +  GI++    +    +++  
Sbjct: 352 WWVSQDPELLSAPEIKELLENPKIKKDTFNAKAHYVALHRQ-GIELHGNGF-DFLLVSYL 409

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                +  +    L                  +   S +         +      +F  +
Sbjct: 410 LNTNDNSNDLG-QLAHEH------------NYYQVQSDEEVYGKGKSRHLPDDRSVFFTH 456

Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +   A  +L   L              D ER L  +   +   G  +D   + ++   
Sbjct: 457 LVQKGMAIEQLKHPLTDQLHENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSK 516

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
           + +   +L++ I         +   T  L   LF    + ++  ++    T   +L    
Sbjct: 517 LKERLAELEQAIYNEAGEEF-NINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEKLQ 575

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                 D IL     S      +  L + + S D ++         ++TGR S      Q
Sbjct: 576 GRAPIIDNILVYRQISKIQSTYITGLLKVIHSSDQKIHTRYLQT-LTQTGRLSSVDPNLQ 634

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P                                +R     S  G K+  +D + +E R
Sbjct: 635 NIP------------------------VRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELR 670

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAK 446
           VLA + G+    + F +G+DI+ +T  + F+  P +KV+   R   K +   + Y     
Sbjct: 671 VLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYG---- 726

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     + + +   +    S F+++   + +   +     +    + L        
Sbjct: 727 -ISDYGLSQNIHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGYVETLTHR----- 780

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               R     +                      +                          
Sbjct: 781 ----RRYLPEINSKNFSRRSFAERTAMNTPIQGSAADI---------------------- 814

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                 +K     +N    +   +                     + +            
Sbjct: 815 ------IKIAMINMNEQLQKAGLKA--------------------KMLLQIHD------- 841

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               E++ E P+     +  L   +M         +PLK E      +
Sbjct: 842 ----ELIFEAPEEEIDQLRELVPKVMDSAVK--LDVPLKVESKVGDTW 883


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 169/705 (23%), Positives = 278/705 (39%), Gaps = 85/705 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60
             LF+D ET S   L + G+  Y +        + +    +   D  E    +P  ++ +
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEVGQPVPKQIIGH 63

Query: 61  LRDETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNA 112
           L       VAHN+ F+      + ++  G     ++   +  C++  AR NGLP SL  A
Sbjct: 64  LN--GSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C AL       K  EG    A++ K    +P  D T A+H + +    +Y   D +A   
Sbjct: 122 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFTRTYKYALIDTDAMVG 173

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           +++  +PL   E+  + +D  IN RG  +D++    +++L A    +LD ++  LTDG I
Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +  +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +     
Sbjct: 234 LAVTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQAL 347
             L   V   GRL+    ++GA   GR +              PR  +        + A 
Sbjct: 293 AILRAHVG--GRLQHHTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 349

Query: 348 NRGETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
            RG+            +       R    A   G  LV ADL+GIEAR+  W+A +  K+
Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  G D Y       ++   D V+K+QR +GKV +LALG+ GG   F +MA++ G+ L
Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                +                                        +   WRA      +
Sbjct: 470 PPEQVS---------------------------------------EIVYNWRAGRPAFER 490

Query: 520 LWKDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574
            W          + + G   +         ++   R  R + + LPS R + Y + +   
Sbjct: 491 WWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLHL 550

Query: 575 --GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
             G    +           T   K+   N  Q ++RD+    + +  +   +IV  V+DE
Sbjct: 551 EPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDE 609

Query: 632 IVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            + E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 610 ALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/580 (14%), Positives = 154/580 (26%), Gaps = 147/580 (25%)

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK                + T            +Y   D + T  L   L 
Sbjct: 1   ETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDADITLRLHCVLA 45

Query: 179 PLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           P             + E  L  + + I   G +ID + + K    +++    + +     
Sbjct: 46  PKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMV-IAQQKAMD 104

Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             G   +      L++ LF    +            T +  L           +IL   +
Sbjct: 105 LAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVILEYRS 164

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +         L E +    GR+       GA  TGR S      QN+P           
Sbjct: 165 LAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP----------- 212

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   +A +G+KL+  D + IE R++A ++G+   + AF
Sbjct: 213 -------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAF 259

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +G D++    A+ F   ID+V+  +R   K +                    G+     
Sbjct: 260 ESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------GLIYGMS---- 301

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +     +     +  +  GV    +
Sbjct: 302 --------------------------AFGLARQLGISRGEAQDYIALYFDRFSGVRDFME 335

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +  +                                       RRL  + +        T
Sbjct: 336 NTRQQARDRGYVETVF--------------------------GRRLYLNSIASGNQ---T 366

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDIVLTVHDEIVS 634
             +   R            +Q  + DI+   M            +    ++L VHDE+V 
Sbjct: 367 QRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVF 420

Query: 635 ETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E  +    + V  + + M         +PL  +      +
Sbjct: 421 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 458


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/563 (15%), Positives = 165/563 (29%), Gaps = 121/563 (21%)

Query: 125 MEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              G  L ++  + + ++                A          +++   E  + L   
Sbjct: 396 DLAGYLLNSQAGEYTAENLCLTYKVTYRSDMGDFADVCSLLPLAENLKLQLEQTEMLKLF 455

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
           ++ E  L  +  ++   G R D + + +  + + ++ + L + I  L  G   +      
Sbjct: 456 NEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEALTKQIYDLAGGEF-NIASPKQ 514

Query: 241 LRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   L+   G+     ++    T   +L           L+L     +  +   ++ L +
Sbjct: 515 LGEVLYEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVRLVLEYRTLTKLSSTYVDGLLK 574

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V SDGR+    +    +RTGR S      QN+P                          
Sbjct: 575 EVESDGRVHSVFKQTE-TRTGRISSTEPNMQNIP------------------------VR 609

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +A  G  L+ AD + IE RVLA + G++   K F  G DI+  T ++ F
Sbjct: 610 KEIGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTASQVF 669

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             P D V  E R+  K +   +                G+                    
Sbjct: 670 GIPADMVLPEMRSAAKAVNFGII--------------YGIG------------------- 696

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                          +    +     +   K +      V Q      +     ++ G  
Sbjct: 697 -----------AFSLSKDIGVSVAEAKQYIKNYLDNFPKVSQFM---DKTVEDGIKNGYV 742

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            +                          RR    ++      +     +           
Sbjct: 743 TTI-----------------------FGRRRYIPELSATNKVMQAFGKRA---------A 770

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSL 650
               +Q  + DI+   M          K    ++L VHDE++ E  P+    +   L   
Sbjct: 771 MNAPIQGAAADIIKIAMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEE 830

Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673
           M      A  +P++    E + +
Sbjct: 831 MENAVKLA--VPMEVSVGEGESW 851


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/621 (14%), Positives = 179/621 (28%), Gaps = 131/621 (21%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           + L+D+ +  V ++      +  +   G     K      + +       S      + +
Sbjct: 350 KLLKDQGIQKVVYDLK---NILHRVDFGDTYQLKNCNDVMLASYVLDSTRS------SYD 400

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I+                A  +            D+ + + +++ +
Sbjct: 401 LETLF---------ISYLNTDIAIIKENRWAGATILLRNLWDELSKLIDLNSCQYVYENI 451

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 E  L  +   +   G++++ + + +  + I  +  KL+  I ++  G   +   
Sbjct: 452 ------EIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIA-GEWFNINS 504

Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
              L   LF    + +V  ++    T   +L           LIL+    +         
Sbjct: 505 PKQLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELYDKHEIVPLILDYRMYTKILTTYCQG 564

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L +A++S  GR+       G + TGR +      QN+P                      
Sbjct: 565 LMQAINSVTGRVHSNFIQTG-TATGRLASAESNLQNIP---------------------- 601

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   I   G  L+ AD + IE R+LA I+ ++  I AF N  DI+  T 
Sbjct: 602 --VKYDEGRLIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTA 659

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           A+ F   + +V+   R+  K +   + Y               + + +          FE
Sbjct: 660 AEIFGVDVSQVTPTMRSQAKAVNFGIIYG-----ISDYGLSKDIKISRKEAAEFINRYFE 714

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            + + + +   +     E      L      +         + +    K+L      +  
Sbjct: 715 KYPKVKEYLDNVVKFARENGFVLTLFNRKRYI---------KDIKSTNKNLRNYAERIAM 765

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                 +        ++               RRL   ++K                   
Sbjct: 766 NSPIQGSAADIMKIAMIRVY------------RRLKEENLK------------------- 794

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
                       SR IL                 VHDE++ E+P      V  +    M 
Sbjct: 795 ------------SRIIL----------------QVHDELLIESPYEEKEIVKEIVKTEME 826

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
              S    +PL  E  E   +
Sbjct: 827 NAVS--LKVPLVVEVKEGLNW 845


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/631 (13%), Positives = 175/631 (27%), Gaps = 128/631 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           + + L D T++    N+  E  +  K LGI +    +    +++       +  +   AL
Sbjct: 411 VKRILEDSTILKNVFNAK-ELYVSLKRLGIALKGVSF-DLLLVSYLLDTNDNNNDLG-AL 467

Query: 117 NFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       +   GK           D   +   +A  +   +        D   + 
Sbjct: 468 AHDNDYYAVMTDEEVYGKGAKFAIPAADADFFEHLGRKAMAINLLRE----PLLDRLLSH 523

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E   +L    D E  L  +   +   G  +D + +L+++  + +   +L++ I +     
Sbjct: 524 E-QTKLYE--DIELPLTKILADMESTGITVDSEQLLQMRSKLTERLSELEQKIYQQAGHE 580

Query: 232 IRSSRQTYALRMYLFLITG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
             + +    L + LF       I        T   +L          + IL     +   
Sbjct: 581 F-NIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEKM-GDVPIVESILAYRQVAKIQ 638

Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +  L   +  SD ++         ++TGR S      QN+P                
Sbjct: 639 STYVEGLLRVIHGSDSKVHTRYLQT-LTQTGRLSSVDPNLQNIP---------------- 681

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   +   +  +++ AD + IE RVLA I G+     AF NGE
Sbjct: 682 --------VRIEEGRQIRKAFVPSHSDWQILSADYSQIELRVLAHITGDKNLQAAFINGE 733

Query: 407 DIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           DI+  T  + F     + V    R   K +   + Y               + + +    
Sbjct: 734 DIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYG-----ISDFGLSKNIGVSRKEAK 788

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
               + F+ +   +     +     E    + +            R     +     +  
Sbjct: 789 AIIETYFDQYPDVKKWSDDIIASARETGYVETIAHR---------RRYLPDIKAKRFNAR 839

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                               + +N+   
Sbjct: 840 SFAER-----------------------------------------------TAMNSPIQ 852

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFS 643
                     K+    VQA              + G    ++L VHDE++ E P +    
Sbjct: 853 G---SAADIIKIAMIKVQA-----------AIEQAGMQAHMLLQVHDELIFEAPASEMAD 898

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  L   +M         +PL    +    +
Sbjct: 899 LEKLVTKVMDSAVK--LDVPLLVSSHVGASW 927


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/630 (14%), Positives = 178/630 (28%), Gaps = 135/630 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L+Q+L         H +     +     GI++       T++ A              
Sbjct: 372 KVLVQWLESPA-PKYFHAAKAAFHMLAG-RGIELDGLA-HDTALAAYILRPGQRTYELSD 428

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                         K+L A   + S+        +A  +           +D+++  EL+
Sbjct: 429 VYQR-------HLQKSLGAATEQMSLLDSSSLVDQAAAIMELAEKLTAELQDIDS-FELY 480

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
             L      E  L  +   +   G  +D+D++   ++   ++  + +    +L      +
Sbjct: 481 TDL------ELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDEKLN 534

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAI 289
                 L+  LF    +     ++    T    +            D +L          
Sbjct: 535 LNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHREYQKMKT 594

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             L  L + V  DGR+  T      + TGR S      QN+P                  
Sbjct: 595 T-LEGLIKTVQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP------------------ 634

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +RS  I   G  +L+ AD + IE RV+A ++ +   I+A+  GED+
Sbjct: 635 ------VRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDL 688

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    ++ F+ P+D+V+ E R   K M                    GL           
Sbjct: 689 HNFVGSRVFDVPVDQVTPELRRRVKAMSYG--------------LVYGLS---------- 724

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   + +  +     + + +++  +  GV +   D+ E  
Sbjct: 725 --------------------AFGLSQQLGIPAGEAKSIMESYFERFGGVKKYLDDVVEQA 764

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                RR    ++  D         +  
Sbjct: 765 RKDGYTATLF--------------------------GRRRYLPELNSDNRLARENAERA- 797

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
                        +Q  + DI+   M    +        ++L VHDE+V E        V
Sbjct: 798 --------ALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQV 849

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             +    M         +PL+        +
Sbjct: 850 REILEREMDSAIE--LNVPLEVSAGAGTDW 877


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/660 (14%), Positives = 182/660 (27%), Gaps = 150/660 (22%)

Query: 33  CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            A+AW +          D   +   P +                  ++     +    L 
Sbjct: 345 VAFAWGNSEKIYVSKNLDLLTEMKFPEN-----------------TYDFKKNRVLLSHLN 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           I++P  ++    +           K        +     T  E        F KG+  + 
Sbjct: 388 IELPLVKF-DAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI-------FGKGTKLAL 439

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P D    +H+          K  + A     ++   LSD E  L  +   +   G  +  
Sbjct: 440 PDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQ 499

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + + ++     ++   L  +I  L      +      L + LF    + +   ++    T
Sbjct: 500 NTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYST 558

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL     +      +  L   ++ DG++         ++TGR 
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKEQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRL 617

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   + S    L+ +D
Sbjct: 618 SSVDPNLQNIP------------------------VRLEEGRKIRKAFVPSQDSLLLSSD 653

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA I+ ++  I AF +G DI+ +T  + F                       
Sbjct: 654 YSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGI--------------------- 692

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                                  +    T+      +A +  +         A    +  
Sbjct: 693 ----------------------EKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITR 730

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +   + +  ++ G+    +++                                   +
Sbjct: 731 KDAKNYIETYFERYPGIKTYMENIVREARDKG--------------------------FV 764

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
              S RR    D+      +        R          + +Q  + DIL   M N  K 
Sbjct: 765 ETMSHRRRKIPDINARNFNVRGFA---ERTAI------NSPIQGSAADILKIAMINLDKA 815

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDEI+ + P      +  L    M +    A  +PLK +    K +
Sbjct: 816 LTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVDDNTGKTW 873


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 187/665 (28%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  +    ++L   + + V     ++     +    
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPIFKEFLEKTS-LKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           LG+++ +  +  + +         +        +                 + KG   + 
Sbjct: 395 LGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIASLYSQTY----LVDDETFYGKGVKKAI 448

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           P       H+ A ++        V         +L  L D E+ L  +   +   G ++ 
Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257
            + +L++Q       ++L ++I +L      +      L + LF   G+           
Sbjct: 508 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL+    +      +  L + +  DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 722 NFGVVY-----GISDFGLANNL-------------------------------------- 738

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +  +  G+    +++                               
Sbjct: 739 -GISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK---------------- 781

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      +        R          + +Q  + DIL   M 
Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
              K          ++L VHDEIV E P +   +V  L    M +       +PL A+  
Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAIQ--LSVPLIADEN 880

Query: 669 EAKRY 673
           E   +
Sbjct: 881 EGATW 885


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/662 (15%), Positives = 188/662 (28%), Gaps = 165/662 (24%)

Query: 31   TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--DI 88
               A A     V+     +       L ++L     +     +  +     ++  +  DI
Sbjct: 496  VAFAVAVAGCEVQYSGPVQG------LARHLASAKRI-----ATPDVKALLRSHALWRDI 544

Query: 89   PSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            P  RW    + A     P                    +    G  L+A      +    
Sbjct: 545  PGDRWFDLGLAAYLLD-PEERDYGWPRLAARWGDMLDRSTDNPG--LLALEMAQGMAGRL 601

Query: 145  YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               +    ++                             E  L  +   + + G  +D  
Sbjct: 602  AGASLDTLMRTL---------------------------ELPLVPVLADMEEAGIAVDRT 634

Query: 205  LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGT 260
                  + +  E  ++ +++ K   G   + R    L   LF   G+  V  +      T
Sbjct: 635  AFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGGQATT 693

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             +  L   +      DLIL+           L  L + V   GR+  T     A+ TGR 
Sbjct: 694  SQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDDAGRIHSTFNQL-ATATGRL 752

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
            S      QN+P                          G     +RSC  A+ G  LV AD
Sbjct: 753  SSSNPNLQNIP------------------------ARGDLGRRMRSCFTAAEGNLLVSAD 788

Query: 381  LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
             + IE RVLA ++ +   + AF  G DI+  T    ++T  + V+ +QR   K +     
Sbjct: 789  YSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF--- 845

Query: 441  YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                           G+                                 +   + ++  
Sbjct: 846  -----------GLIYGMGP------------------------------QKLGQELRITV 864

Query: 501  TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +   + + ++ Q +   + ++                                    
Sbjct: 865  NEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTL----------------------- 901

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619
               + RR +  ++  + +      SQ  R+          ++Q  + DI+   M  A   
Sbjct: 902  ---AGRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDD 949

Query: 620  -----NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS--WAKGLPLKAEGYEAK 671
                     ++L VHDE++ E P+    +    L  LM++         +PL  +    K
Sbjct: 950  PVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGK 1009

Query: 672  RY 673
             +
Sbjct: 1010 DW 1011


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/705 (12%), Positives = 185/705 (26%), Gaps = 122/705 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSA------- 52
           ++ +D ET         GV  +         +  ++   V           S        
Sbjct: 148 EVALDTETT--------GVEWW---DRTVGLSLTFEFGDVEENFYIPYGHTSDHEQLTRG 196

Query: 53  -MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
            +   L  +L  +    V HNS F+  +  K  GI I +  +  T +            L
Sbjct: 197 YVMKKLKPHLEKKGTKLVLHNSKFDSHMLLK-DGITIRNNIYFDTMIAHSVLNENDEKGL 255

Query: 110 KNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           K         F      M  G+    +      +     CT             Y  +  
Sbjct: 256 KAIATKYGRFFGFEDKSMSFGELFSNKPEAFYSNESMELCTFYACKDTHLCLKLYKWQLS 315

Query: 168 EATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               +   +L     + E+ L      + + G+ ID       +  +  E   L++ + +
Sbjct: 316 --MMKKQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADMYKTELQAEVSDLEQKMTR 373

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  +      L   L+    +  +          L      +    LIL     + 
Sbjct: 374 RFGE--INLNSPAQLSALLYDELKLPDISGKRKADAKTLQKLVKHESDLKLILEYRDLNK 431

Query: 287 SAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                +  L E V+ + G+L  +     A+ T R++      QNLP              
Sbjct: 432 LLTTYVEPLPEKVNKNTGKLHSSFNQS-ATVTSRFASKDPNLQNLP-------------- 476

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                              R  I+A  G  +   D + IE R LA ++G+      + N 
Sbjct: 477 ----------------PKARKLIVAPKGYLIFGIDYSQIEPRTLAHMSGDAGLQYPYLNN 520

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +  +K F  P +                          +              + 
Sbjct: 521 IDLYASLASKIFKLPYEAC-----------------------LEADGETY--------KK 549

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                      +     +      P  A    +     +     + + +  +        
Sbjct: 550 AGLPKHPRKMMKVGLLAVMYGITVPSLAESLGISVPEAQKFMDDFYSSYPEMTAWMAKQV 609

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                          +R      ++ + +   +H  + +       ++  +    N    
Sbjct: 610 AHADETGYVETMQGRKRRFIGHTVIAKHYHA-LHAKVVNILGREPENIWREPLPRNLKKQ 668

Query: 586 QLMRERTY---GGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSET 636
                + Y          I+Q  +  +L + M            G+ ++ T+HDE++   
Sbjct: 669 YWEVNKDYQRVARMSVNAIIQGSAALMLKKAMIAVNAHLERKGAGWKMMATIHDELLFLI 728

Query: 637 PDT--------PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           P+             +  +             +PLK +     R+
Sbjct: 729 PEAVTPEEIIEIENIMKDVVK---------LDVPLKVDTEVMIRW 764


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 161/563 (28%), Gaps = 131/563 (23%)

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------- 183
           L+A     +  + P    R         + E        T  L + L P  D        
Sbjct: 452 LVAYLLDPANTNMPIVAERY----LRTTWPEDAATRAAITYRLLQDLPPHLDEARRKLYE 507

Query: 184 --ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L  + + +  RG R+D D +  L E +A     L+ +I +L      + R    L
Sbjct: 508 EVEKPLSAVLKRMEVRGVRLDSDYLRGLSEALAGRIATLEAEIHRLAGREF-AIRSRDQL 566

Query: 242 RMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
              L+   G+     ++      T  S L            +L            L+ L 
Sbjct: 567 ETVLYDELGLASGKKTKLTGKRSTAVSALEPLRNEHPIIPALLEYRELEKLRGTYLDPLP 626

Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
             V+   GRL  T     A  TGR S      QN+P                        
Sbjct: 627 NLVNPRTGRLHTTFSQTTA-ATGRLSSLNPNLQNIP------------------------ 661

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   IA  G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+
Sbjct: 662 IRSELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQ 721

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                 D ++  QR   K +                    G+                  
Sbjct: 722 VLGLAEDAITPNQRRAAKTVN--------------FGVLYGMS----------------- 750

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                            + +  +           +   + G+ +  +             
Sbjct: 751 -------------AHRLSNELGIPYAEAAQFIDVYFNTYPGIRRYIER------------ 785

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                          +   +   ++     RR    ++K     +  A  +L        
Sbjct: 786 --------------TLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERL-------- 823

Query: 596 KLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
                 +Q  + DI+   M    +     G  ++L VHDE++ E P T    V  L   +
Sbjct: 824 -AYNMPIQGTAADIIKIAMVRLDQELDALGARLLLQVHDELLIEAPATQADRVAALTREV 882

Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673
           M +       +PL  E      +
Sbjct: 883 MEQAAH--LSVPLAVEVGTGPNW 903


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/669 (16%), Positives = 191/669 (28%), Gaps = 135/669 (20%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERIL 79
              A    +T  A A  D         +Q  +     L  +L D     V H++    + 
Sbjct: 334 HWSAGTGDVTSLALATTDGLAAWV-AADQLDVADQTALAGWLADPKRPKVLHDAKGPMLA 392

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
                G+ +       T++ A          +    L       ++++G A   +     
Sbjct: 393 LA-AWGLPLAGLD-RDTALSAYLARPDQRSYDLA-DLTVRYLKRELKQGGADDGQLSLDG 449

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
           +D          H +A  +       D E       RL+   D E  L  L   +   G 
Sbjct: 450 LDDRNAGEIEMLHARA--VLDLAAALDDELEERGGTRLLN--DIELPLVDLLAKMEQTGI 505

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
            +D D +  L+   A E +   E    +    I +      L+  LF   G+     ++ 
Sbjct: 506 AVDTDHLEALESHFAAEVRDAAEQAFGVIGKEI-NLGSPKQLQAVLFDELGMPKTKRTKT 564

Query: 260 -------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                   L+++   +    L   L+ +R  S       +  L + V+ DGR+  T    
Sbjct: 565 GYTTDADALQALYVKTEHPFLLH-LLRHRDVSRLRQT--IEGLLKTVAGDGRIHTTFNQT 621

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            A  TGR S      QN+P                                +R   +   
Sbjct: 622 IA-ATGRLSSTEPNLQNIP------------------------IRTEEGRRIREGFVVGP 656

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           G + L+ AD + IE R++A ++ +D  I+AF +G D +  T A+ F+ P D V+ E RA 
Sbjct: 657 GYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAK 716

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K M   L                GL                                  
Sbjct: 717 IKAMNYGL--------------AYGLS------------------------------AFG 732

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
              +  +  +    +   +     G+      + E                         
Sbjct: 733 LGQQLGIEPSEARGLMDEYFQTFGGIRDYLGGVVEEARKAG------------------- 773

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         RR    D+  D         ++              +Q  + D++ 
Sbjct: 774 -------FTETIWGRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADLIK 817

Query: 612 EGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
             M N  +          ++L VHDE+V E        +  L    M      A  +PL 
Sbjct: 818 IAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLVREQMGAAADLA--VPLD 875

Query: 665 AEGYEAKRY 673
                 + +
Sbjct: 876 VSVGFGRSW 884


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 188/672 (27%), Gaps = 144/672 (21%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D +         L  +L D       H +          
Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL +  L     E   +          
Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENP---QQQQL 466

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L+     E  +  +   +
Sbjct: 467 SLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 524

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  +DLDL+ +LQ   A + +    +      G   +      L+  LF    +   
Sbjct: 525 EKAGIAVDLDLLSELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELQMPKT 583

Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
             ++    T    L              +L    ++   +  ++ L  +V+SDGR+  T 
Sbjct: 584 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 642

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                            A   +R   +
Sbjct: 643 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 677

Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
             +G  +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF  PI++V+ E 
Sbjct: 678 VGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGEL 737

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K M                    GL                               
Sbjct: 738 RRRVKAMSYG--------------LAYGLS------------------------------ 753

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               + + K+     +    A+ A+  GV      + E           +          
Sbjct: 754 AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVL---------- 803

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    ++      +  A  +               +Q  + D
Sbjct: 804 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 838

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           I+   M    K          I+L VHDE++ E        +  L    M         +
Sbjct: 839 IIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 896

Query: 662 PLKAEGYEAKRY 673
           PL+      + +
Sbjct: 897 PLEVSVGYGRSW 908


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 118 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 176

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 177 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 235

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 236 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 295

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V    +   T+     ++TGR S      QN+P                         
Sbjct: 296 KVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 331

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 332 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 391

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 392 IFQVSEDEVTPNMRRQAKAVNF--------------GIPYGISDYGLAQN---------- 427

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 428 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 467

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 468 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 493

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 494 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 552

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 553 EVMEQAVT--LRVPLKVDYHYGSTW 575


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/614 (14%), Positives = 174/614 (28%), Gaps = 129/614 (21%)

Query: 75  FERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGK 129
           ++     +    L I++P  ++    +           K        +     T  E   
Sbjct: 374 YDFKKNRVLLSHLNIELPLVKF-DAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI-- 430

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
                F KG+  + P D    +H+          K  + A     ++   LSD E  L  
Sbjct: 431 -----FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAE 485

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G  +  + + ++     ++   L  +I +L      +      L + LF   
Sbjct: 486 VLAKMEITGISVSQNTLEEIGAENEEKLALLTREIYELAGEEF-NINSPKQLGVILFEKL 544

Query: 250 GIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
            + +   ++    T   +L            IL     +      +  L   ++ DG++ 
Sbjct: 545 QLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIH 604

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                   ++TGR S      QN+P                                +R 
Sbjct: 605 TRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEEGRKIRK 639

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             + S    L+ +D + IE RVLA I+ ++  I AF +G DI+ +T  + F         
Sbjct: 640 AFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGI------- 692

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
                                                +    T+      +A +  +   
Sbjct: 693 ------------------------------------EKAEDVTANDRRNAKAVNFGVVYG 716

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 A    +     +   + +  ++ G+    +++                      
Sbjct: 717 ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKG-------------- 762

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                        +   S RR    D+      +        R          + +Q  +
Sbjct: 763 ------------FVETMSHRRRKIPDINARNFNVRGFA---ERTAI------NSPIQGSA 801

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
            DIL   M N  K          ++L VHDEI+ + P      +  L    M +    A 
Sbjct: 802 ADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEAIELA- 860

Query: 660 GLPLKAEGYEAKRY 673
            +PLK +    K +
Sbjct: 861 -VPLKVDENTGKTW 873


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/682 (13%), Positives = 172/682 (25%), Gaps = 147/682 (21%)

Query: 13  PQPLPKVGVWAYAE-------QAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQYLR 62
              L + G   YA         A +   A +  D   +     D  + +A    L +   
Sbjct: 302 SPDLLQDGALVYANVDNESYYDAQLYGFAISLQD-RTEYIELSDALQDTAFLEWLKE--E 358

Query: 63  DETVMCVAHNSLFERILFKKTL-GIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFS 119
           +         ++++   F   L   +IP         + A       S          F 
Sbjct: 359 NGK-------AVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFD 411

Query: 120 EHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             L K    GK    +      D                +            +ELF  + 
Sbjct: 412 RSLLKDDVFGKKGKGKL--VDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFTTI- 468

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E  L  +   +   G    L  + ++ +  + +   L   I ++      +    
Sbjct: 469 -----EMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGMEF-NINSP 522

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
             L   L+   G+        T   +L           L+L               LS+ 
Sbjct: 523 KQLAGILYDELGLKAGKKR-STAADVLEKLASQHPMIPLLLEHRKYQKIYSTYAVGLSKH 581

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V  DG++         ++TGR S      QN+                            
Sbjct: 582 VLKDGKIHTIFNQIQ-TQTGRLSSSEPNLQNI------------------------SVRD 616

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +AS G  L+ AD + IE R+LA +A E+  I AF +G DI+  T  + F+
Sbjct: 617 EEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFD 676

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              D V    R   K +                    G      S+              
Sbjct: 677 VEHDAVDANMRRSAKTVNF--------------GIVYGQSDFGLSEQ------------- 709

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                              +           + A +  +                     
Sbjct: 710 -----------------LGITRKEAHAFIDKYFASYPNIKNFMDTTIAFCEEHGYVKTLF 752

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
           +                          RR    ++      +     +            
Sbjct: 753 N--------------------------RRRYIKEISDKNYMMREFGKRA---------AM 777

Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651
              +Q  + D++   M +  K          ++L +HDE++ +  +     + T+    M
Sbjct: 778 NAPIQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGM 837

Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673
                    +PL AE    + +
Sbjct: 838 QHAMK--LRVPLIAEANIGRTW 857


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/661 (14%), Positives = 182/661 (27%), Gaps = 146/661 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            +     A  DE     D ++     +   L  Y  D  +  ++ N+  E +++ K  G+
Sbjct: 337 KVEGLTVA-SDEEACYIDTSDLDLAELIDKLQPYFEDYELNKLSLNTK-ENLIYLKEQGV 394

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           ++    +    +        +                     K                +
Sbjct: 395 EVKGISF-DPLLADYLLRPSA---------------------KEQDLESILTDQLQMELE 432

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLD 204
            T +      Q      K   + T +L  +  +    D E  L  +   +   G  +D D
Sbjct: 433 KTESEAETEVQQVRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNGIAVDQD 492

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTL 261
           ++ +L   + ++   L     +L      +      L   LF   G+           T 
Sbjct: 493 MIQELSNKLEEKLDSLRSRAYELAGEEF-NLNSPKQLGEILFEKLGLPVIKRTKTGYSTS 551

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
            S+L           LIL            ++ L + ++    R+  +      + TGR 
Sbjct: 552 ASVLEKLEDKHEIVPLILEYRKYQKLKSTYVDPLPDLINPKTERIHTSFNQLV-TATGRL 610

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +A   K+L+  D
Sbjct: 611 SSTEPNLQNIP------------------------IRTEEGRRIRKVFVAEERKELLAVD 646

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA I+ ++  I A+  G+DI+  T A+ F     +VS +QR   K +     
Sbjct: 647 YSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASEVSYQQRRRAKAINF--- 703

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+     ++++                               +  
Sbjct: 704 -----------GIAYGISPWGLAKDI------------------------------NVSK 722

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              E     +  ++  V +      +           ++                     
Sbjct: 723 QEAEDYINQYLNRYPKVKEYMDHQIKQAKEEGYVTTILN--------------------- 761

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616
                RR    ++           S   R            +Q  + DI+   M      
Sbjct: 762 -----RRRYLPEINSSN---YHRRSFGERMAI------NTPIQGSAADIMKLAMLESARV 807

Query: 617 ATKNGY--DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +      I+L VHDE++ E P      V   + + M         +PLK +      +
Sbjct: 808 LDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDVIE--LDVPLKVDLKVGSNW 865

Query: 674 R 674
           R
Sbjct: 866 R 866


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/566 (13%), Positives = 164/566 (28%), Gaps = 129/566 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A   L +  +           
Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWALERPFLDELRRNEQDRL 473

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ E +A++ + +++ I +L      +     
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPK 532

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL-NRLASSGSAILKLNTL 295
            L + LF    + ++  S+    T   +L          + IL +           +  L
Sbjct: 533 QLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGL 592

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + V  D +   T+     ++TGR S      QN+P                        
Sbjct: 593 LKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------ 628

Query: 356 PLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T  
Sbjct: 629 IRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAM 688

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             F    D+V+   R   K +                    G+     +QN         
Sbjct: 689 DIFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN--------- 725

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                  +         + +     GV +  +++ +        
Sbjct: 726 ---------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYV 764

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
              +                           RR    D+      + +   ++       
Sbjct: 765 TTLLH--------------------------RRRYLPDITSRNFNVRSFAERM------- 791

Query: 595 GKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L 
Sbjct: 792 --AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLV 849

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
             +M +  +    +PLK + +    +
Sbjct: 850 PEVMEQAVT--LRVPLKVDYHYGSTW 873


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/666 (14%), Positives = 176/666 (26%), Gaps = 153/666 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
            A++W ++      +          ++ L     +       ++     +    LGI++P
Sbjct: 345 LAFSWGNKEAIYVSKNLDLLKDRLFVEALSKP--IKT-----YDFKRSKVLLSHLGIELP 397

Query: 90  SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +  +  + +          + L            L K  E     A+             
Sbjct: 398 TADF-DSRLAKYLLSTVEDNELSTIASLYG-QTPLAKDVEVYGKGAKKAVP--------- 446

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRI 201
                   +Q      +  VE    L ++L          D E  L  +   +   G ++
Sbjct: 447 ---EDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITGIKV 503

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDM 256
           +   +  ++         L ++I  +      +      L   LF   G+          
Sbjct: 504 NRQTLKDMEVENQVTLDALTQEIYDMAGQEF-NINSPKQLGTILFEEMGLPTSMTKKTKT 562

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L            IL     +      +  L + +  DG++         ++
Sbjct: 563 GYSTAVDVLERLAPHAPIVAKILEYRQIAKLQSTYVVGLQDFILDDGKIHTRYLQ-DLTQ 621

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R           
Sbjct: 622 TGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFTPEWEDSV 657

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434
           L+ +D + IE RVLA I+G++  I AF NGEDI+  T  + FN    + V+   R   K 
Sbjct: 658 LLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRNAKA 717

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y               L                                     
Sbjct: 718 VNFGVVY-----GISDYGLSQNL------------------------------------- 735

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +   A +     +  +  G+    + +                              
Sbjct: 736 --GISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVETLFK--------------- 778

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+      +        R          + +Q  + DIL   M
Sbjct: 779 -----------RRRTLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADILKIAM 818

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
            N  +          ++L VHDEIV E P+    ++  L    M      A  +PL A+ 
Sbjct: 819 INLDQALEAGSFKTKMLLQVHDEIVLEVPNAELSAIKKLVKKTMESAIVLA--VPLLADE 876

Query: 668 YEAKRY 673
              K +
Sbjct: 877 NSGKTW 882


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 66  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 106

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 107 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 155

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 156 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 214

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 215 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 274

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 275 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 309

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 310 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 369

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 370 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 424

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 425 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 471

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 472 -----------------MKLAMVKLFPRLEEMG--------------------------- 487

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 488 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 532

Query: 668 YEAKRY 673
              + +
Sbjct: 533 GIGEDW 538


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/658 (13%), Positives = 186/658 (28%), Gaps = 127/658 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A +       +D+     D       P  L   L +  +     ++    +  ++   + 
Sbjct: 340 AELAGFVIGHNDQWWVSRDTALLQQAP--LKGLLENADIAKQVFDAKRTFVALQR---LA 394

Query: 88  IPSKRWICTSVL-ARTN---GLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDS 142
           +      C  +L +         + L    +          +   GK   A         
Sbjct: 395 VTLTGVDCDLLLGSYLLNTYDNSNDLGRLAMEHGYHQVATDEDVYGKGAKAAIPDDDDVF 454

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             +   +A  ++  +        D E T  L++      D E  +  +   +   G  ++
Sbjct: 455 FSHLARKARAIEQLRPQIFKDLADNEQTD-LYR------DIELPMAFVLARMEVAGITVE 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              +  +     ++  ++++ I         +      L   LF   G+ ++  ++    
Sbjct: 508 ASELEAMGSKFTEQLAEIEQTIYNEAGEEF-NIGSPKQLGHILFEKMGLPVIKKTKTGYS 566

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L          + IL     +      +  L + +  D +   T      ++TGR
Sbjct: 567 TAVGVLEKLAAEAPIAENILKYRKIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGR 626

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +      ++  
Sbjct: 627 LSSVDPNLQNIP------------------------VRNEEGRAIRKAFVPSHPDWEIFS 662

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437
           +D + IE RVLA ++ +    +AF  G+DI+  T  + F   P ++V+   R   K +  
Sbjct: 663 SDYSQIELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNF 722

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               + + +        + FE++   +++   M  Q  E    + 
Sbjct: 723 GIVYG-----ISDFGLSQNIGISRKQAKAFIDTYFEEYPGVKAYTERMVQQAHELGYVET 777

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556
           +            R     +     +         +      SA  +  +  + M +  +
Sbjct: 778 IAHR---------RRYLPDINSRNFNQRSFAERTAMNTPIQGSAADIIKIAMIRMEQALK 828

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           D                                            +QA         M  
Sbjct: 829 D--------------------------------------------MQAT--------ML- 835

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                    L VHDE++ E P +   ++  L  S+M         +PLK E +    +
Sbjct: 836 ---------LQVHDELIFEAPASEIDTLAKLVPSVMDSAIE--LEIPLKVESHYGPTW 882


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 63  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 104 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 152

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 153 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 211

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 212 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 271

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 272 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 306

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 367 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 421

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 422 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 468

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 469 -----------------MKLAMVKLFPRLEEMG--------------------------- 484

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 485 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 529

Query: 668 YEAKRY 673
              + +
Sbjct: 530 GIGEDW 535


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/673 (13%), Positives = 188/673 (27%), Gaps = 153/673 (22%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82
             A I   A   ++            A P   + +L DET       S+F+     +  K
Sbjct: 32  HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK-ALIARFCKGSID 141
             GI++    +                      L               +         +
Sbjct: 86  WKGIELXGVSFD---------------LLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDE 130

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLD 191
           +      +        +  E+  R   A  EL +  +             + E+ L  + 
Sbjct: 131 AVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSIL 189

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G ++D   + ++ + +A++   +++ I +L      +      L + LF    +
Sbjct: 190 AEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPKQLGVILFEKLQL 248

Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
            ++  ++    T   +L          + IL+           +  L + V    +   T
Sbjct: 249 PVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHT 308

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           +     ++TGR S      QN+P                                +R   
Sbjct: 309 IFNQALTQTGRLSSTEPNLQNIP------------------------IRLEEGRKIRQAF 344

Query: 369 IASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           + S     +  AD + IE RVLA IA +D  ++AF    DI+  T    F    D+V+  
Sbjct: 345 VPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPN 404

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +                    G+     +QN                      
Sbjct: 405 MRRQAKAVNY--------------GIVYGISDYGLAQN---------------------- 428

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                     +         + +     GV +  +++ +           +         
Sbjct: 429 --------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH-------- 472

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR    D+      + +   ++              +Q  + 
Sbjct: 473 ------------------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAA 505

Query: 608 DILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKG 660
           DI+ + M +        +    ++L VHDE++ E P      +  L   +M +  +    
Sbjct: 506 DIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LR 563

Query: 661 LPLKAEGYEAKRY 673
           +PLK + +    +
Sbjct: 564 VPLKVDYHYGSTW 576


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V    +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNY--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/600 (15%), Positives = 175/600 (29%), Gaps = 144/600 (24%)

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            I   RW    + A                 +     +   G  L        + +    
Sbjct: 400 GIDPARWFDLGLAAYLLNPEE------RDYGWPRLAARW--GDELERSSGNPGLLALEMA 451

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              +              +     R L          E  L  +   +   G  +DLD  
Sbjct: 452 GALSG--------RLAGAQLSRLMRTL----------EMPLIPVLADMEAAGIAVDLDAF 493

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262
                 +  E  +L  D+ K   G   + R +  L   LF   G+     ++     T +
Sbjct: 494 AAFLREVQGELDRLTRDVYKAAGGEF-NIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQ 552

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +      D IL            L  L   V   GR+  T     A+ TGR S 
Sbjct: 553 DVLEKLSGRHPVVDAILEFRKLEKLRSTYLEPLPRLVDGAGRIHTTFNQL-ATATGRLSS 611

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                          G     +R+C  A+ G +LV AD +
Sbjct: 612 SNPNLQNIP------------------------VRGDLGRRMRTCFTAAPGLRLVSADYS 647

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            +E RVLA ++ +   + AF  G DI+  T +  ++   D+VS +QR   K +       
Sbjct: 648 QVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRNAKTINF----- 702

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+                                 + A + ++  T 
Sbjct: 703 ---------GLIYGMGP------------------------------QKLAQELRIPLTE 723

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +   + + +K Q + + + +       +                               
Sbjct: 724 AKAFIERYFSKLQKLREFYDEAETTARELGYVTTM------------------------- 758

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------N 616
            + RR +  ++  + +      SQ  R+          ++Q  + DI+   M        
Sbjct: 759 -AGRRRLLPEIHSENT---QLKSQARRQAI------NTLIQGSAADIIKLAMLAAHADPE 808

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT--KNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E P     +    L ++M+  +    A  +PL  +  + + +
Sbjct: 809 LRALNARLILQVHDELLLEVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWGQGENW 868


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 63  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 104 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 152

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 153 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 211

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 212 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 271

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 272 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 306

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 367 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 421

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 422 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 468

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 469 -----------------MKLAMVKLFPRLEEMG--------------------------- 484

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 485 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 529

Query: 668 YEAKRY 673
              + +
Sbjct: 530 GIGEDW 535


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 61  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 101

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 102 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 150

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 151 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 209

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 210 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 269

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 270 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 304

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 305 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 364

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 365 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 419

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 420 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 466

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 467 -----------------MKLAMVKLFPRLEEMG--------------------------- 482

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 483 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 527

Query: 668 YEAKRY 673
              + +
Sbjct: 528 GIGEDW 533


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 62  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 102

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 103 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 151

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 152 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 210

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 211 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 270

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 271 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 305

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 306 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 365

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 366 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 420

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 421 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 467

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 468 -----------------MKLAMVKLFPRLEEMG--------------------------- 483

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 484 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 528

Query: 668 YEAKRY 673
              + +
Sbjct: 529 GIGEDW 534


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/597 (14%), Positives = 158/597 (26%), Gaps = 129/597 (21%)

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEH-LTKMEEGKA-LIARFCKGSIDSPPYD 146
           +     + A            ++             K   GK  L   F +    +    
Sbjct: 392 QIQDVGIQAYLLNPLQSAYDYEDIARDYLRQMLPSRKEVCGKKALEEVFSQEEEKTVQMA 451

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              +              R+ E   EL+         ER        +   G  ++ D +
Sbjct: 452 AYLSYVPFHAYPLVLEKLREAEME-ELY------LTIERPTVATLYDMEKYGITVEKDAL 504

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +  + +    ++L+++I +   G   +      L + LF    +     ++    T   
Sbjct: 505 KEYGDQLVGRIEELEKNIYEQA-GKTFNINSPKQLGVILFEDLKMPFAKKTKTGYSTSAD 563

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL            IL     +       + L+  +  DG++         + TGR S  
Sbjct: 564 ILEKLAPDYPIVSNILEYRQLTKLKSTYADGLAAFIQEDGKIHSIFHQ-KVTATGRLSSS 622

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   +  +G   V AD + 
Sbjct: 623 DPNLQNIP------------------------IRMPLGRAIRKVFVPDSGYVFVSADYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA +AG++  I A+ +GEDI+  T ++ F  P ++V+   R   K +        
Sbjct: 659 IELRVLAHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNF------ 712

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   +   K+     
Sbjct: 713 --------GIVYGIS------------------------------AFGLSQDLKISRKEA 734

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                 + A + G+                        R                     
Sbjct: 735 SEYIDKYFATYPGIKTYLDGNVAFAKKEGYVKTLYGRVRPIPELSSSNFMQ--------- 785

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------ 617
                      G+   +N++                  +Q  + DI+   M         
Sbjct: 786 --------RSFGERVAMNSS------------------IQGTAADIIKIAMIRVSKRLQE 819

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            K    ++L +HDE++ ET +     V  +    M         +PL  +  E K +
Sbjct: 820 EKLASRLILQIHDELLIETKEDEVEEVRKILKEEMMGAAD--LKVPLSIDIEEGKTW 874


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%)

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
            +         ++      +        +  E+  R   A  EL +  +           
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177

Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E+ L  +   +   G ++D   + ++ + +A++   +++ I +L      +     
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF    + ++  ++    T   +L          + IL+           +  L 
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + V    +   T+     ++TGR S      QN+P                         
Sbjct: 297 KVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332

Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   + S     +  AD + IE RVLA IA +D  ++AF    DI+  T   
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F    D+V+   R   K +                    G+     +QN          
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNY--------------GIVYGISDYGLAQN---------- 428

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +         + +     GV +  +++ +         
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
             +                           RR    D+      + +   ++        
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
                 +Q  + DI+ + M +        +    ++L VHDE++ E P      +  L  
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    +PLK + +    +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 63  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 104 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 152

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 153 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 211

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 212 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 271

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 272 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 306

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 367 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 421

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 422 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 468

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 469 -----------------MKLAMVKLFPRLEEMG--------------------------- 484

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 485 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 529

Query: 668 YEAKRY 673
              + +
Sbjct: 530 GIGEDW 535


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 149/658 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILF-KKTLG 85
           A IT    A   E   L        +     Q L D  V   VA     +  +     L 
Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398

Query: 86  IDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            +I  +   +   + A       +               +  E             +   
Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN-------------KFEPLELVKEYIPGAGEFANLAE 445

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                A    +++   E           L   L    + E  L  +   +  +G  +D+ 
Sbjct: 446 EASALAQVADSYKETLE--------ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQ 494

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            + +    +  E ++L+++I     G   +      L   LF   G+  +  ++    T 
Sbjct: 495 RLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTD 553

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
              L          + +L+    S      +N L   +   GR+  T Q    + TGR S
Sbjct: 554 ADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQQTV-TATGRLS 611

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380
                 QN+P                                +R        G  L+ AD
Sbjct: 612 STEPNLQNIP------------------------IRLELGRLLRKVFTPTQEGWVLLSAD 647

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA  + ++   ++F+  +D++  T ++ F  P+ +V+K+ R   K +     
Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          GL                                        +  
Sbjct: 705 -----------GLIYGLTDF------------------------------GLGRDLGVPR 723

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +   + +  +++GV +  +++        Q    ++  R     R   R        
Sbjct: 724 KEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQ------ 777

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         G+   +NT                   +Q  + DI+   M    + 
Sbjct: 778 -----------RQFGERIAMNT------------------PIQGTAADIMKLAMLGVAEA 808

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +++L VHDE+V E        V  +    M         +PL A+      +
Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 115/674 (17%), Positives = 203/674 (30%), Gaps = 125/674 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             A A  D      D T   A     L  +L D  +    H   +      ++ G  +  
Sbjct: 364 GLAIAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEVKWGIHAL-RSRGWTLAG 422

Query: 91  KRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                TS+ A          +L +  L     E       G   ++       D      
Sbjct: 423 VT-SDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGDGQLSLLD---DDGGAAKL 478

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
              + ++A  +       D E  R     L  L++ E  L  +   +   G  +D+D   
Sbjct: 479 AEQHMLEARAVVELAEVLDTELDRI--DSLPLLTEMELPLAFVLADLEAAGIAVDVDHFG 536

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260
           +L++  AQ   ++  +      G   +      L+  LF    +                
Sbjct: 537 ELEKNFAQRI-RVAANAAYDVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADA 595

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+++   +    LA   +L    ++   +  ++ L ++V+ DGR+  T     A  TGR 
Sbjct: 596 LQALYEKTEHPFLAH--LLEHRDATRLKVT-VDGLLKSVADDGRIHTTFNQTIA-ATGRL 651

Query: 321 SGCVFQPQNLPRQERSEEILTQTI-------------QALNRGETIADPLGLASDCVRSC 367
           S      QN+P +  +   + Q                    G +  D +G  S      
Sbjct: 652 SSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSGHD 711

Query: 368 IIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
               +G   L+ AD + IE R++A ++ +   I+AF  GED++    ++AF  PID+V+ 
Sbjct: 712 GGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTT 771

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           E R   K M   L                GL     +  +K                   
Sbjct: 772 EMRHRVKAMSYGL--------------AYGLSAFGLAAQLK------------------- 798

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      +     +    A+ A+  GV     D+                      
Sbjct: 799 -----------ISRDEAKEQMDAYFARFGGVRDYLHDVVAEARRNEYTATLF-------- 839

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RR    D+  D            R ++         +Q  +
Sbjct: 840 ------------------GRRRYLPDLNSDN---------WQRRQSAERMALNAPIQGTA 872

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
            DI+   M N  K          ++L VHDE+V E       +V  +    M    +   
Sbjct: 873 ADIIKVAMINVHKRLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAAIT--L 930

Query: 660 GLPLKAEGYEAKRY 673
            +PL+      + +
Sbjct: 931 SVPLEVSVGFGRSW 944


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/677 (14%), Positives = 195/677 (28%), Gaps = 149/677 (22%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSL 74
           K G+            A  +  + V          +  + S + +   D  +  +  N  
Sbjct: 321 KCGISIAKGDV-FAGVAICYKPDSVTFISCEGLITEEYLVSKIKEL--DCEIYTI--NLK 375

Query: 75  FERILFKKTLGIDIP--SKRWICTSVLARTNGL---PSSLKNACLAL-NFSEHLTKMEEG 128
                    L         +    +++A             +        +        G
Sbjct: 376 -------NHLEYFTDSYKDKIHDIAIMAYLLNPLLQEYEYNDIANDFMGITVEGRSDIIG 428

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--LSDGERD 186
           K  ++ +     D           + A + +  +   D EA + L +  +     D E  
Sbjct: 429 KNKVSSYLTDGFDKIVK-------LFALEAYVAFNSFD-EAMKRLRETDMEKVYHDIELP 480

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           +  + +++   G  ++ D + +  + ++ + K L++ I K       +      L   LF
Sbjct: 481 VIYVLKSMEKYGIAVNKDALKQYGDELSVKIKDLEQSIYKEAGTEF-NINSPKQLGEVLF 539

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               +     ++    T   +L   +      D IL     +       + L+E +  DG
Sbjct: 540 EKLNLPCGKKTKTGYSTSADVLEKLSADYPIVDSILEYRTLAKLKSTYADGLAEYIV-DG 598

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T      + TGR S      QN+P                                
Sbjct: 599 RIHSTFNQT-ITATGRISSTEPNLQNIP------------------------IRMELGRK 633

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R   +  +G   + AD + IE R+LA ++G+D  I+A+    DI+  T +K F TP+D+
Sbjct: 634 IRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDE 693

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+  QR+  K +   + Y        +      L                          
Sbjct: 694 VTPRQRSNAKAVNFGIVYG-----ISSFGLSRDLS------------------------- 723

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                         +     +     +   ++ +     +L +              RR 
Sbjct: 724 --------------ISKKEAKEYIDEYFNTYKTLKNYLDNLVKSAKENGYTKTIYGRRRP 769

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                             L S   +      G+   +N+                    Q
Sbjct: 770 VP---------------ELSSGNFM--QRQFGERIAMNSPL------------------Q 794

Query: 604 AISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
             + DI+   M N  K          ++L +HDE++ ET       V  +    M    +
Sbjct: 795 GTAADIIKIAMINVYKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAAT 854

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  + +  K +
Sbjct: 855 --LRVPLAIDIHSGKDW 869


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/665 (14%), Positives = 188/665 (28%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  +  L ++L  +T + V     ++     +    
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           L +++ +  +  + +         +        N              I  + KG   + 
Sbjct: 395 LDLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY---LADDEI-FYGKGVKKAI 448

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           P       H+ A ++        V         +L  L D E+ L  +   +   G ++ 
Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257
            + +L++Q       +KL ++I +L      +      L + LF   G+           
Sbjct: 508 KETLLEMQAENELIIEKLTQEIYELAGEKF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL+    +      +  L + +  DG++         ++T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQT 625

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   +       L
Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435
           + +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K +
Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               L                                      
Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +     +  +  G+     ++                               
Sbjct: 739 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      +        R          + +Q  + DIL   M 
Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
              K          ++L VHDEIV E P +   ++  L    M +       +PL A+  
Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKVLVKQTMEEAIQ--LSVPLIADEN 880

Query: 669 EAKRY 673
           E   +
Sbjct: 881 EGATW 885


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 149/658 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILF-KKTLG 85
           A IT    A   E   L        +     Q L D  V   VA     +  +     L 
Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398

Query: 86  IDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            +I  +   +   + A       +               +  E             +   
Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN-------------KFEPLELVKEYIPGAGEFANLAE 445

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                A    +++   E           L   L    + E  L  +   +  +G  +D+ 
Sbjct: 446 EASALAQVADSYKETLE--------ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQ 494

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            + +    +  E ++L+++I     G   +      L   LF   G+  +  ++    T 
Sbjct: 495 RLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTD 553

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
              L          + +L+    S      +N L   +   GR+  T Q    + TGR S
Sbjct: 554 ADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQQTV-TATGRLS 611

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380
                 QN+P                                +R        G  L+ AD
Sbjct: 612 STEPNLQNIP------------------------IRLELGRLLRKVFTPTQEGWVLLSAD 647

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA  + ++   ++F+  +D++  T ++ F  P+ +V+K+ R   K +     
Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          GL                                        +  
Sbjct: 705 -----------GLIYGLTDF------------------------------GLGRDLGVPR 723

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +   + +  +++GV +  +++        Q    ++  R     R   R        
Sbjct: 724 KEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQ------ 777

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         G+   +NT                   +Q  + DI+   M    + 
Sbjct: 778 -----------RQFGERIAMNT------------------PIQGTAADIMKLAMLGVAEA 808

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +++L VHDE+V E        V  +    M         +PL A+      +
Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/665 (12%), Positives = 183/665 (27%), Gaps = 147/665 (22%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
            + ++       I   + ++ +  +   ++   +     +      + ++ V    +++ 
Sbjct: 333 TIALYIDITDNTINSMSLSYKEGTILYINKEHITHALDLIKPLFSLDHILKV----MYDV 388

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
               K +  D     +    +++ +    + L +                   L     +
Sbjct: 389 KTLFKIIQEDTNITAFDDILIMSYSLD--AGLHD-----------------HTLKNIIIR 429

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
                   +                          ++ R+      E+ L  +   +   
Sbjct: 430 NIDKHDITNENITASTLLSLHTALRRNLFTNQLCTIYYRI------EKPLINVLHNMEKI 483

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM- 256
           G  ID  ++ KL    + +   L+E I KL+     +   +  L   LF   GI      
Sbjct: 484 GIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEF-NIASSRQLSTILFDKMGIKKGKKL 542

Query: 257 ---SEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              +  T   +L           D IL     +       + L++ + ++     T    
Sbjct: 543 SSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSM 602

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ TGR S      QN+P                              + +R+  IA +
Sbjct: 603 TSTVTGRLSSSNPNLQNIP------------------------IRSEEGNAIRNAFIAKS 638

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KL+ AD + IE R++A IA       AF+  +DI++ T  + FNT             
Sbjct: 639 GYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT------------- 685

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
                                                       ++ +  +         
Sbjct: 686 ---------------------------------QNIDKKLRRKAKSINFGIIYGISPFGL 712

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A +  +  +      + +   +  +    +D+                            
Sbjct: 713 AKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVF-------------- 758

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+    D+  +   L   + +               +Q  S DI+  
Sbjct: 759 ------------GRKCFIKDINSNNHALRNFSERA---------AVNAPLQGTSADIIKM 797

Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGY 668
            M +       GY ++L VHDE++ E P+     +V  +  +M         +PLK +  
Sbjct: 798 SMIHLFDRLKTGY-MILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDIT 854

Query: 669 EAKRY 673
               +
Sbjct: 855 IGDNW 859


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 94/530 (17%), Positives = 155/530 (29%), Gaps = 118/530 (22%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
              G    +  E   E    L      E  L  +   +   G  ID        + +  +
Sbjct: 491 ARLGLAMAQLFEQRMEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQ 550

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
             +L   + +L  G   + R    L   LF   G+     ++     T +  L       
Sbjct: 551 LDQLTAHVYELA-GTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQH 609

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              D IL            L+ L   V   GR+  T     A+ TGR S      QN+P 
Sbjct: 610 PVVDSILQYRKLEKMRSTYLDPLPRLVDPQGRIHTTFNQ-KATATGRLSSSNPNLQNIP- 667

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                    G     +RSC IA  G+ LV AD + +E RVLA +
Sbjct: 668 -----------------------VRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHV 704

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   ++AF NGEDI+  T A  ++ P D+VS +QR   K +                 
Sbjct: 705 SQDPALLEAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFG-------------- 750

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              G+                                 + A + K+  T  +     +  
Sbjct: 751 LIYGMG------------------------------AQKLAQELKISTTQAKDFIARYFE 780

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           + QG+ + ++ +                                   +     RR +  D
Sbjct: 781 RLQGLKEFYEGVEASARKHG--------------------------FVTTLGGRRRLLPD 814

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVL 626
           +            +              ++Q  + DI+   M          +    ++L
Sbjct: 815 INSASGQAAALARRQA---------INTVIQGSAADIIKLAMLAVARDERLRELDARLLL 865

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTK--NPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P       G L   LM           +PL  +      +
Sbjct: 866 QVHDELLLEVPADAAEEAGALVARLMQDVCPAGKELSVPLLVDWGTGHDW 915


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 86/606 (14%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+  +      +LA      ++  +                        
Sbjct: 354 DLAVLALREGLDLFPE--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 394

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                  +           + +Q   E  K +          L    + E+ L  +   +
Sbjct: 395 ----GEWTEDAGERALLAERLFQTLKERLKGEERL-------LWLYEEVEKPLSRVLARM 443

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +  E ++L+E++ +L      +      L   LF   G+   
Sbjct: 444 EATGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 502

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          D IL     +      ++ L   V    GRL   
Sbjct: 503 GKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTR 562

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 563 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 597

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LVV D + IE RVLA ++G++  I+ F  G DI+  T +  F    + V    
Sbjct: 598 VAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLM 657

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 658 RRAAKTINFGVLYGMSAHRLSGE-----LSIPYEEAVAFIERYFQSYPKVRAWIEGTLEE 712

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 713 GRRRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 759

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      L                            
Sbjct: 760 -----------------MKLAMVRLFPRLQELG--------------------------- 775

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                E+V E P      V  L   +M     W   +PL+ E 
Sbjct: 776 --ARMLLQVHD-----------ELVLEAPKDRAERVAALAKEVMEGV--WPLQVPLEVEV 820

Query: 668 YEAKRY 673
              + +
Sbjct: 821 GLGEDW 826


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/641 (14%), Positives = 178/641 (27%), Gaps = 126/641 (19%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D   + L D  +    P+    +L D +   +  +S  ++++     G+D+    +    
Sbjct: 350 DSHEIYLADWDQAIQSPA-FKAWLADASNQKILFDSKRDQVILANA-GLDLAGIDF-DIM 406

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF----CKGSIDSPPYDCTRANHV 153
           +                 L        M    +L+        KG+  + P      +H+
Sbjct: 407 IANYLIDTH-----LAKELADMLTNNDMP---SLVKYDEAVYGKGAKQAVPDSAELNDHL 458

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
                        +    +           E  L  +   +  +G ++D  ++    + +
Sbjct: 459 ANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGVKVDAQILADKNQAL 518

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI 270
            +   +++ +I  L      +      L + LF    + ++  ++    T   +L     
Sbjct: 519 LERLAQMEAEIYDLAGEEF-NINSVKQLGVILFEKLELPIIKKTKTGYSTAADVLEKLAD 577

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  IL     S      L  L   +  DG++         ++TGR S      QN+
Sbjct: 578 KHPIIPAILEYRQISKLQGTYLAGLPTYIKEDGKIHSRFVQT-LTQTGRLSSADPNLQNI 636

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVL 389
           P                                +R   +    G +L  AD + IE RVL
Sbjct: 637 P------------------------ARIEEGRRIRQAFVPAHEGWQLFGADYSQIELRVL 672

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGAKVF 448
           A IA +   I AF +GEDI+  T  + F    D  +    R   K +   + Y       
Sbjct: 673 AHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYG-----I 727

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                   L++ +        + FE +         +  +  E    + L          
Sbjct: 728 SDYGLSNNLNIPRKHAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKR------- 780

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             R     +     ++                                            
Sbjct: 781 --RRYLPDIDASNFNIRSFAER-------------------------------------- 800

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVL 626
                    + +N+             K+    +Q    D          + G    ++L
Sbjct: 801 ---------TAMNSPIQG---TAADIIKIAMVRIQ----D-------ALDEKGLQSRLLL 837

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           +VHDE++ E P      +  L   +M         +PLK E
Sbjct: 838 SVHDEVILEGPAEEMEVLSDLVPDIMESCVE--LDVPLKVE 876


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 96/658 (14%), Positives = 186/658 (28%), Gaps = 146/658 (22%)

Query: 34  AYAWDDEP-----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           A A+ D+      V+L D + +      L Q+L         H +     +     GI++
Sbjct: 355 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLA-SDTPKYFHEAKAAFHMLAG-RGIEL 410

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                  T++ A                                 R  + ++ +     +
Sbjct: 411 AGIA-HDTALAAYLLRPGQRTYALADVY----------------QRHLQKTLSAATEQLS 453

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             ++           +     T EL +       +D E  L  +   +   G  +D+D++
Sbjct: 454 LLDNSSLVDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 513

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
              ++   ++  + +    +L      +      L+  LF    +     ++    T   
Sbjct: 514 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 573

Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +            D +L            L  L + V  DGR+  T     AS TGR S
Sbjct: 574 EIEQLAAKNPHPFLDHLLAHRKYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLS 631

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380
                 QN+P                            A   +RS  I  +G  +L+ AD
Sbjct: 632 STEPNLQNIP------------------------VRTEAGRQIRSAFIVGDGFDELMTAD 667

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RV+A ++ +   I+A+  GED++    ++ F+ P+D+V+ E R   K M     
Sbjct: 668 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYG-- 725

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          GL                                   + +  +  
Sbjct: 726 ------------LVYGLS------------------------------AFGLSQQLGIPA 743

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              + + +++  +  GV +   ++                                    
Sbjct: 744 GEAKSIMESYFERFGGVKKYLDEVVAQARKDGYTATLF---------------------- 781

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RR    ++  D         +               +Q  + DI+   M    + 
Sbjct: 782 ----GRRRYLPELNSDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDRA 828

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE+V E        V  +    M         +PL+      K +
Sbjct: 829 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 884


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 188/672 (27%), Gaps = 144/672 (21%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D +         L  +L D       H +          
Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL +  L     E   +          
Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENP---QQQQL 466

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L+     E  +  +   +
Sbjct: 467 SLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 524

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G  +DLDL+ +LQ   A + +    +      G   +      L+  LF    +   
Sbjct: 525 ENAGIAVDLDLLSELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELQMPKT 583

Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
             ++    T    L              +L    ++   +  ++ L  +V+SDGR+  T 
Sbjct: 584 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 642

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                            A    R   +
Sbjct: 643 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRTRDAFV 677

Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
             +G  +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF  PI++V+ E 
Sbjct: 678 VGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGEL 737

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K M                    GL                               
Sbjct: 738 RRRVKAMSYG--------------LAYGLS------------------------------ 753

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               + + K+     +    A+ A+  GV      + E           +          
Sbjct: 754 AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVL---------- 803

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    ++      +  A  +               +Q  + D
Sbjct: 804 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 838

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           I+   M    K          I+L VHDE++ E        +  L    M         +
Sbjct: 839 IIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 896

Query: 662 PLKAEGYEAKRY 673
           PL+      + +
Sbjct: 897 PLEVSVGYGRSW 908


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/657 (12%), Positives = 178/657 (27%), Gaps = 129/657 (19%)

Query: 30  ITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           I   A   + E       D    S +      +  D     +  ++   ++   +   I+
Sbjct: 336 IEGIAV-VNKERASFIPTDIALNSNI---FKAWAEDPQKHKIVFDAKRTKVALLRN-NIN 390

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSP 143
           +       + + +       +  +     N          +   GK    +      D  
Sbjct: 391 MQGI-IFDSLLASYLLNPAENNHDIPAIANRKSRSDVQFDEEVFGKGAKQK--VPEADVL 447

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                R   +    LF  Y + + E        L+   + E  L L+   +   G ++D+
Sbjct: 448 NEHVVRKTQL----LFDLYPEMEEELGNNEQYELLK--ELEMPLALILAEVEHYGVQVDI 501

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           D +  + E + +    L++++ +L  G   +      L   LF   G+ ++  ++    T
Sbjct: 502 DKLKDMGEDLKERLSTLEQEVYELA-GETFNLNSPKQLGPILFEKLGLPVIKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319
              +L            +L            +  L + V  D  R+         ++TGR
Sbjct: 561 AADVLEQLENEHDIIPKLLMYRQLGKLQSTYIEGLLKVVRKDTSRIHTRYNQA-LTQTGR 619

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +   +   +  
Sbjct: 620 LSSIEPNLQNIP------------------------IRLEEGRKIRQAFVPSKDNWIMFA 655

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE RVLA IAG++  IKAF    DI+  T    F+   D+V+   R   K +   
Sbjct: 656 ADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +          F  +   +++   +  +         +
Sbjct: 716 IVYG-----ISDYGLSQNLGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTI 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
           +           R     +     ++        +      SA  +     + +      
Sbjct: 771 MKR---------RRYLPDITSRNFNMRSFAERTAMNTPIQGSAADIIKKAMIDLD----- 816

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                          +K +    N                                +   
Sbjct: 817 -------------HRLKEENLQANV-------------------------------LLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L        E P+     +  +   +M         +PLK +    K +
Sbjct: 833 HDE---LIL--------EAPENEIDKLKEIVPDVMENTVE--LDVPLKVDYSFGKSW 876


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 79/668 (11%), Positives = 188/668 (28%), Gaps = 139/668 (20%)

Query: 25  AEQAVITLCAYAWDDEPVK------LWDRTEQ---------SAMPSDLLQYLRDETVMCV 69
            +++ +    +   D  +           ++            +  DL     DE +  +
Sbjct: 315 IKKSKLMGFKF-ITDGKIYEGVDPTYIGLSDGVVTSFYEYSKDIVEDLRALFEDEKIEKI 373

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKM 125
            +++  + I+   +  ID+ +  +  + ++       +S                   K 
Sbjct: 374 GYDAKEDVIILL-SKKIDLKNLTY-DSMIVEYLLDSTASSFEFQNIISKY---DLGSYKD 428

Query: 126 ---EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                GK +  +          +   +         F     +  +        L    +
Sbjct: 429 EQSLLGKGVKKKSYSDLEKDELF---KYFSFILNGSFKLKEIQMEKLEELEMVDLYR--E 483

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G + ++ ++  + + +    + L   I +++     +   T  L 
Sbjct: 484 IELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEISGEEF-NINSTKQLG 542

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + ++  ++    T + +L          + IL     +      ++ L   +
Sbjct: 543 EILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPIIENILEYRKLTKLKNTYIDGLKALI 602

Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+       G + TGR S      QN+P                           
Sbjct: 603 NEKTGRIHSRFNQTG-TSTGRISSTEPNLQNIP------------------------IRS 637

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +AS    LV  D + IE RVLA ++ +   ++AF +G DI+  T ++ F+
Sbjct: 638 EEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFH 697

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              + V+   R+  K +   + Y               L + +          F+++++ 
Sbjct: 698 VDKEDVTDLLRSRAKAVNFGIVYG-----ISDFGLSRQLGITRELAKEYIDGYFDNFKKV 752

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           + +  +  +   +      +            R     +     ++      +       
Sbjct: 753 KEYMDYEIETGKKQGYVKTIFNR---------RRYIPELSAKNFNIRSFGERIALNTPIQ 803

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            +                          ++    V G+    N                 
Sbjct: 804 GSAADII---------------------KIAMVKVYGEIKKRN----------------- 825

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSW 657
                                    ++LT+HDE+V +  +     V  L   +M      
Sbjct: 826 ---------------------LKSKLILTIHDELVVDAVNDELEVVEELMKDIMENAVK- 863

Query: 658 AKGLPLKA 665
              +PLK 
Sbjct: 864 -LNVPLKV 870


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 90/654 (13%), Positives = 174/654 (26%), Gaps = 143/654 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
              AW D+                  + L     +       ++     +    LGID+ 
Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLL 389

Query: 90  SKRWICTSVLARTNG--LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +  +  + +          +++        +          GK            + P  
Sbjct: 390 TASF-DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKR--------AIPEK 440

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               +H+          +  +        +L  L + E  L  +   +   G  +  + +
Sbjct: 441 NVLLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETL 500

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTL 261
             ++     E + L ++I  L  G   +      L + LF   G+             T 
Sbjct: 501 QDMERANEIELQALTQEIYDLA-GEAFNINSPKQLGVILFEKLGLPLSATKKTKTGYSTA 559

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
             +L            IL     +      +  L +++S DG++         ++TGR S
Sbjct: 560 VDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRYLQ-DLTQTGRLS 618

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380
                 QN+P                                +R   +       L+ +D
Sbjct: 619 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSD 654

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439
            + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   +
Sbjct: 655 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 714

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L                                        + 
Sbjct: 715 VY-----GISDFGLANNL---------------------------------------GIS 730

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             A +   + +  ++ G+      +                                   
Sbjct: 731 RKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFH-------------------- 770

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+      + +      R          + +Q  + DIL   M +  +
Sbjct: 771 ------RRRELPDINSRNFNIRSFA---ERTAI------NSPIQGSAADILKVAMIHLDQ 815

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                     ++L VHDEIV E P+    ++  L    M         +PL A+
Sbjct: 816 ALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVKETMESAIE--LSVPLVAD 867


>gi|297626697|ref|YP_003688460.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 104/684 (15%), Positives = 180/684 (26%), Gaps = 141/684 (20%)

Query: 11  RSPQPLP-KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMC 68
           RS  P+  +      A    I   A+A   +     D  E +      L  +L D     
Sbjct: 324 RSDDPIGVEATGHWGAGTGDIDTLAFATTSDDAACVDVPELTPDDEKALAAWLTDPQATK 383

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGL---PSSLKNACLALNFSEHLTK 124
             H +              +        T + A           L +  L     E   +
Sbjct: 384 AMHGAK---GPLLALWARQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRHLGRELRVQ 440

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             E                         ++A  +       D E      + L+     E
Sbjct: 441 DSEQVNQETLDF-----GSERQPAETAMLRARAIAELAGVLDGELDDTSQRGLLHSL--E 493

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +  RG  ID+D++ +L+       +   E       G   +      L+  
Sbjct: 494 MPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQA-AEQAAFAAIGTQINLGSPKQLQAV 552

Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           LF    +     ++         L+ +   +    L   L+  R       I  ++TL +
Sbjct: 553 LFDQLDMPKTKRTKSGYTTDADALEKLYQKTRHPFLEH-LLAYRDTIKLRQI--IDTLIK 609

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           + S DGR+  T     A  TGR S      QN+P                          
Sbjct: 610 STSDDGRIHTTYVQTVAG-TGRLSSTDPNLQNIP------------------------IR 644

Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   +   G + L+ AD + IE RV+A  +G+   I AFA+G D +  T +  
Sbjct: 645 TPEGRRIRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHV 704

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F+ P+++V+  QR+  K M   L Y               L+                  
Sbjct: 705 FDVPVEQVTPAQRSSVKQMNYGLAYG-----LSAYGLSSRLN------------------ 741

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                                +       +   +      V      L E          
Sbjct: 742 ---------------------VSVPEARALMDQYFQTFGPVRDYLDSLVEKARKQGYTET 780

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +                           RR    D+            ++         
Sbjct: 781 ML--------------------------GRRRYLPDLNSSNRQRRQMAERM--------- 805

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
                +Q  + DI+   M    +          ++L +HDE+V E        V  +   
Sbjct: 806 ALNAPMQGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIVGD 865

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
            M         +PL       + +
Sbjct: 866 KMKHAIE--LTVPLDVSFGYGRSW 887


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 88/603 (14%), Positives = 167/603 (27%), Gaps = 145/603 (24%)

Query: 87  DIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           D+ + R     V A       S   + +            ++  G   I      ++ + 
Sbjct: 426 DVDASRIFDVGVAAYLLESDRSSFTIPSLVEFYF----GVELSVGSDKIPAAAYEAVAAR 481

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
               T    ++  +    +                     E  L  +   +  RG  +D 
Sbjct: 482 ALKATLTKKLEDDKSLELFETI------------------EMGLLPVLAAMERRGLFVDP 523

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMS--- 257
             + +  + +  +     E I +   G   +      L   LF + G+            
Sbjct: 524 AKLAEQSKELGADIASRVERIHEAA-GETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGF 582

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +LS    T      +L     +      L+ L   +  D R+  T     A  T
Sbjct: 583 YSTNAKVLSDLADTYQIVADVLEYRERAKIKSTYLDALPALIRGDHRIHTTFNQTVA-AT 641

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                VR+     +G   +
Sbjct: 642 GRLSSSDPNLQNIP------------------------TRSELGHRVRTAFTVPSGHVFL 677

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE R+LA ++G++  I AF +G D +  T ++ F  P+++V+ E R+       
Sbjct: 678 ACDYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRA----- 732

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                  +A +  +    Q    A   K
Sbjct: 733 ---------------------------------------KAVNFGIVYGQQAYGLATSLK 753

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     + +   + A + GV     +       +  E G                +H R 
Sbjct: 754 IPRAEAQDMIDRYFAAYPGVRAYLDESV----RIAHEKGYAVTMYGRKRHIREFGQHNRQ 809

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           +                G+ + +                   + +Q  + DI+   M   
Sbjct: 810 LI-------------AFGERTAM------------------NHPMQGSAADIIKIAMIRV 838

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
            K          ++L +HDE+  E P+    +V  L    M +       +PL A+    
Sbjct: 839 EKRLRKEGCAAKLILQIHDELDLEVPNDEIEAVSRLVKETMEEVVE--LKVPLIADVSYG 896

Query: 671 KRY 673
             +
Sbjct: 897 PNW 899


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/671 (12%), Positives = 173/671 (25%), Gaps = 145/671 (21%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L     +       ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYVSTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LG+D+       + +                       L       +  A + 
Sbjct: 377 SKVLLSHLGVDL-PAPAFDSRLAKYLL-STVDDNELSTI----AQLYTDYVLDSDEAVYG 430

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           KG   + P      +H+    +   + ++ +       ++   L D E+ L  +   +  
Sbjct: 431 KGVKRAVPEKAVLLSHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLANVLAKMEI 490

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G  +  + + ++++        L ++I  L      +      L   LF    +     
Sbjct: 491 AGISVKKETLQEMEKANQAAIDNLTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYT 549

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     +      +  L + +  DG++      
Sbjct: 550 KKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGKIHTRYLQ 609

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 610 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 644

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
              + L+ +D + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+   R
Sbjct: 645 TADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDR 704

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+     + N                        
Sbjct: 705 RNAKAVNF--------------GIVYGISDYGLANN------------------------ 726

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +   + +  ++ G+    + +                         
Sbjct: 727 ------LGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFH---------- 770

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 771 ----------------RRRELPDINARNFNVRQFA---ERTAI------NSPIQGSAADI 805

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           L   M N  K          ++L VHDEI+ E P     ++  L    M         +P
Sbjct: 806 LKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMESAIE--LSVP 863

Query: 663 LKAEGYEAKRY 673
           L A+    + +
Sbjct: 864 LVADESAGQTW 874


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 100/680 (14%), Positives = 176/680 (25%), Gaps = 143/680 (21%)

Query: 23  AYAEQA-VITLCA----YAWDDEPVKLW-------------DRTEQSAMPSDLLQYLRDE 64
             AE    I   A    +A     V                      A  +    +L D 
Sbjct: 338 WLAEHGTEILGVATVDTWALGAGSVAEIALAAAGGAAAWFDPTALDEADETAWAAWLADP 397

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSE 120
               V HN+     +F +  G  +       T++ A           L       L    
Sbjct: 398 ARPKVFHNAKSAMRVFAEH-GWTVEGVGM-DTALAAYLVKPGRRSFDLDALTLEYLGREL 455

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                 +G   +A       ++          +     FGE  +    A          L
Sbjct: 456 APAATADG--QLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGL--------L 505

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E     L   +   G   D   +  ++++ A   ++  ++          +      
Sbjct: 506 RDVELPTSALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQ 564

Query: 241 LRMYLFLITGIDLVDMSEG---TLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTL 295
           L+  LF   G+     ++    T    L+            ++L     +   +  +  L
Sbjct: 565 LQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGL 623

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            + +++DGR+  +     A  TGR S      QN+P                        
Sbjct: 624 IKTIAADGRIHTSFSQTVA-ATGRLSSTDPNLQNVP------------------------ 658

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  A
Sbjct: 659 VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAA 718

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           + F      V  E R   K M   L Y               L+++         + FE 
Sbjct: 719 QVFGVEQSAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNIEAGEARALIDAYFER 773

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           +     +   + D+  E      L G          R     +    +   E    +   
Sbjct: 774 FGGVRDYLRRVVDEARETGYTATLFGR---------RRYLPDLNSDNRQRREAAERMALN 824

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                     +L   R L  +                       
Sbjct: 825 APIQGTAADIVKI------------AMLNVGRALDEA----------------------- 849

Query: 595 GKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK 653
                     ++                 ++L VHDEIV E           L    M  
Sbjct: 850 ---------GLA---------------SRMLLQVHDEIVLEIAPGERDRTEQLLRHEMAD 885

Query: 654 NPSWAKGLPLKAEGYEAKRY 673
                   PL         +
Sbjct: 886 AVHLRA--PLDVSVGHGPDW 903


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 140/463 (30%), Gaps = 65/463 (14%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--------EQSAMPSDL 57
            D+ET    P              I   +++W                       + + L
Sbjct: 407 FDLETAGLDP---------VHDP-IVGYSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAAL 456

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC- 113
                +  +    HN  F+ I+     G+++       + V             L +   
Sbjct: 457 KPVFENPAIEKRNHNIKFDLIVLA-ASGVELAGVA-GDSMVAHYLLDPGARAHGLDDLTL 514

Query: 114 LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L  +    K     GK  I            Y C  A+         E  + D    R
Sbjct: 515 DELRHTNISIKELIGTGKKQITMAEVPVARVRDYACEDADAALQLAAAFE-PRLDAAGLR 573

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           EL+  L      E  L  +   +   G R+D+  +++L   + +E    + DI  L  G 
Sbjct: 574 ELYDTL------EVPLIRVLAEMEHVGIRVDVPFLVQLGVQMGEELAGYEGDIHALA-GR 626

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS-----EGTLKSILSHSN-ITQLAKDLILNRLASS 285
             +      L+  LF    + +   +       T +  L     +       +L     S
Sbjct: 627 AFNIGSLKELQKILFDELKLPVQKRTGIKNEPSTDQESLERLAALGHELPKKLLAYRKVS 686

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 ++ L      +GR+  +     A  TGR S      QN+P              
Sbjct: 687 KLKSTYVDVLPALADKNGRVHTSFNQASAE-TGRLSSSEPNLQNVP-------------- 731

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   I  +G  LV AD + IE R+L    G+D    AFA  
Sbjct: 732 ----------TRTEQGAQLRKAFIPRDGWVLVTADYSQIELRLLTHFCGDDTLRAAFAED 781

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            D++    A+ F  P  +V+K QR + K +   + Y   A   
Sbjct: 782 RDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMSATGL 824


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 89/600 (14%), Positives = 167/600 (27%), Gaps = 133/600 (22%)

Query: 91  KRWICTSVLARTNGLPSSLKN-------ACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           K +   SV A        LK+       A   +  +        GKA +       +   
Sbjct: 393 KNFYDISVAAYLINP---LKDSYFVEDIAGDYMGSACSSKSEMIGKAKLN----EVLRFN 445

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                    ++++           + +      L      E  L      + + G R+D 
Sbjct: 446 DEKAINYFAMESYVAVHSGENILKKLSELGLDDLYKNI--EMPLIYSLAKMENTGVRVDE 503

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGT 260
           + + K    + ++  KL+E I+    G   +      L   LF    +           T
Sbjct: 504 ERLKKYANTLLEKIDKLEESII-SKAGESFNINSPKQLGEILFGKLKLSGGKKTKTGYST 562

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L    +       IL     +         L+  +  DGR+ GT      + TGR 
Sbjct: 563 AADVLEKLALEHEIIRDILEYRQLTKLNSTYATGLAGYIREDGRIHGTFNQT-ITATGRI 621

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +   G   V AD
Sbjct: 622 SSTEPNLQNIP------------------------VRTEMGSKIRDIFVPKPGYVFVDAD 657

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA ++G++  I+++ +  DI+  T ++ F+ P+++V+ E R   K +   + 
Sbjct: 658 YSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHVPLEEVTPELRRNAKAVNFGVV 717

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               L + +        + F+ +   +           E      + G
Sbjct: 718 YG-----ISAFGLSEDLSISRKEALDYINNYFKIYGGVKKFLDKQVADAKEKGFVKTMFG 772

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +           +                                           
Sbjct: 773 RIRPI---------PEIKSSNFMTRS---------------------------------- 789

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                         GD   +N+                       + DI+   M    + 
Sbjct: 790 -------------FGDRVAMNSPIQG------------------SAADIMKISMLKVDEA 818

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                   +IVL +HDE++ E  +     V  L    M +  S    +PL+ + +  K +
Sbjct: 819 LKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEAVS--LKVPLEVDAHIGKTW 876


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/630 (14%), Positives = 173/630 (27%), Gaps = 135/630 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L+Q+L         H +     +     GI++       T++ A              
Sbjct: 372 KALVQWLESSA-PKYFHAAKAAFHMLAG-RGIELNGLA-HDTALAAYILRPGQRTYELSD 428

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                   +    G A        +              +          +D+++  EL+
Sbjct: 429 VYQRHLQKS---LGAASEQMSLLDNSSLVDQAAAIMELAEKLTT----ELQDIDS-FELY 480

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
             L      E  L  +   +   G  +D+D++   ++   ++  + +    +L      +
Sbjct: 481 TDL------ELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDDKLN 534

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAI 289
                 L+  LF    +     ++    T    +            D +L          
Sbjct: 535 LNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHREYQKMKT 594

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             L  L + V  DGR+  T      + TGR S      QN+P                  
Sbjct: 595 T-LEGLIKTVQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP------------------ 634

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +RS  I   G  +L+ AD + IE RV+A ++ +   I+A+  GED+
Sbjct: 635 ------VRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDL 688

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +    ++ F+ P+D+V+ E R   K M                    GL           
Sbjct: 689 HNFVGSRVFDVPVDQVTPELRRRVKAMSYG--------------LVYGLS---------- 724

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   + +  +     + + +++  +  GV +   D+ E  
Sbjct: 725 --------------------AFGLSQQLGIPAGEAKSIMESYFERFGGVKKYLDDVVEQA 764

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                RR    ++  D         +  
Sbjct: 765 RKDGYTATLF--------------------------GRRRYLPELNSDNRLARENAERA- 797

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
                        +Q  + DI+   M    +        ++L VHDE+V E        V
Sbjct: 798 --------ALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQV 849

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             +    M         +PL+        +
Sbjct: 850 REILEREMDSAIE--LNVPLEVSAGAGTDW 877


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/670 (13%), Positives = 179/670 (26%), Gaps = 126/670 (18%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            + G+  Y E       A   + E V L+       +  D L    D+    + + ++ E
Sbjct: 319 KEAGISIYKEN-DAMWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 377

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIA 133
                  L I   +K     S+ A             +           ++ E       
Sbjct: 378 VKEHLSHLTIHETTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHP 437

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
               G +              + +       +  E       R     + E         
Sbjct: 438 MVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR-----EIEIPTMFALHD 492

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG  +D   + +  + +    ++L E I K       +      L + LF    ++ 
Sbjct: 493 MEVRGIHVDSKALKEYGDQLVGRIEELQESIYKEAGEEF-NINSPKQLGVVLFEHMKLEG 551

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              ++    T   +L           ++L     +       + L+  +  D R+ G   
Sbjct: 552 AKKTKTGYSTSVEVLEKIEHLYPIISMVLEYRQLTKLKSTYADGLANFIQDDQRIHGKFN 611

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   + 
Sbjct: 612 QT-ITATGRISSTEPNLQNIP------------------------IRMELGRAIRKVFLP 646

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            +G   + AD + IE RVLA ++ ++  I A+   +DI+  T ++ F  P+D+V+  QR 
Sbjct: 647 EDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRR 706

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +                    GL                                 
Sbjct: 707 DAKAVNF--------------GIIYGLS------------------------------AF 722

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             +   K+     +     + A +  V +      E            +  R     +  
Sbjct: 723 GLSQDLKISRKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSS 782

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
               +                   G+   +                   + +Q  + DI+
Sbjct: 783 NFMQRN-----------------FGERVAM------------------NSPIQGTAADII 807

Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
              M          +    ++L +HDE++ ET    +  V  +    M    S    +PL
Sbjct: 808 KIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--LRVPL 865

Query: 664 KAEGYEAKRY 673
             +  +   +
Sbjct: 866 NIDIEQGASW 875


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/654 (13%), Positives = 167/654 (25%), Gaps = 152/654 (23%)

Query: 38  DDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           +D  +   D       P+D   L  +L D       H++  E        G+ +      
Sbjct: 377 EDGALHAVDIDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKL-NGSGLVLAGVE-Q 434

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T++ A          +                   +            P         +
Sbjct: 435 DTALAAYLLRPDLRTGDLADV---------------VQRHVGHEITADAPGAVCAQATAE 479

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                                      D E  L  +   +   G  +D   +  L +   
Sbjct: 480 LVAALTPELAEIGAMEL--------YLDLEVPLATVLAKMEATGISVDAASLRDLSDEYG 531

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSH 267
            + +    +   +      +      L+  LF    +     ++         L+ + + 
Sbjct: 532 VQIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGELEKLAAS 591

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                L   L+ +R      +   ++ L EAV+ DGR+  T    GA  TGR S      
Sbjct: 592 HPHPFLGH-LMAHREYQKMKST--IDGLIEAVADDGRIHTTFNQRGA-ATGRLSSSDPNL 647

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386
           QN+P                            A   +R       G   L+ AD + IE 
Sbjct: 648 QNIP------------------------VRTEAGRRIRGAFRVGTGYATLITADYSQIEM 683

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RV+A ++ +   I+A+  GED++    +K F+ P++ V+ E R   K M           
Sbjct: 684 RVMAHLSQDPGLIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYG-------- 735

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    GL                                   + + ++     + +
Sbjct: 736 ------LVYGLS------------------------------AFGLSQQLRISAGEAKQI 759

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  +  GV +   ++                                         R
Sbjct: 760 MDNYFERFGGVKRYLDEVVAHAKETGYTETLY--------------------------GR 793

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R    ++         A  +               +Q  + DI+   M            
Sbjct: 794 RRYLPELNSSNRVAAEAAGRAA---------LNAPIQGTAADIIKRAMLRVDAEFTRRDL 844

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E  D     V  +    M         +PL         +
Sbjct: 845 ASRVLLQVHDELVVEVVDGEQDVVTEILREQMDGAAD--LRVPLDVSTGVGSDW 896


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/604 (15%), Positives = 159/604 (26%), Gaps = 137/604 (22%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           ++I   R   T++ A       S                   G             +   
Sbjct: 456 LEIDVSRTFDTTLAAYLLDSARS-------------HFDD--GYIADTYLSVSLPPARGE 500

Query: 146 DCTRANHVQAWQLFGEYCKRDVE---ATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                +   A        +   E      EL        D E  L  +   +   G  +D
Sbjct: 501 AGAPTDAPVASARAAAVARAAREPLARALELRGAKNVFWDIETPLVPVLVAMERTGMLVD 560

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
              +  L E +  +  +L   I  L      +      L   LF + G+    + +    
Sbjct: 561 PGCLKDLSEGLESQIDELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRG 620

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L           LIL     +      L+TL      DGR+  T      + 
Sbjct: 621 YYSTNARVLDELAQDNELVRLILEYREKTKIKSTYLDTLGPLRRQDGRVHTTYNQT-ITA 679

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                V++   A  G   
Sbjct: 680 TGRLSSSNPNLQNIP------------------------TRSELGHTVKTAFSAGEGALF 715

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +  D + IE R+LA ++G++  I+AF  GED +  T A+ F  P+D+V+   R+      
Sbjct: 716 LAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAARVFGVPVDEVTPRLRSRA---- 771

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                                                   +A +  +    Q    +   
Sbjct: 772 ----------------------------------------KAVNFGIVYGQQAFGLSQTL 791

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +  +  + +   +   + GV           A           RR     R        
Sbjct: 792 DIPVSEAQEMIDRYFEAYPGVRAFLDRTVAEAAERGYAETMFGRRRPIPELR-------- 843

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                     +       G+ + +                   + +Q  + DI+   M+ 
Sbjct: 844 ---------MKNATQRSFGERTAM------------------NHPMQGSAADIIKIAMRR 876

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             +          ++L VHDE+  E P      V  +    M         +PL A+   
Sbjct: 877 VAERLHGGDLHAKMILQVHDELDFECPIAEVADVSAMVREEMEGVVK--LKVPLIADVST 934

Query: 670 AKRY 673
              +
Sbjct: 935 GVTW 938


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/632 (14%), Positives = 179/632 (28%), Gaps = 146/632 (23%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNA 112
           +  + L  +    +A NS     +F+     +  + ++   +++A          +    
Sbjct: 354 EFKKQLL-KAKAIIAENSK---EIFESDFPYE--NLKFYDVTLIAYLLDPTHVTYNRSYV 407

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                                                  ++ A  L   Y        + 
Sbjct: 408 GELFKVPSIYIDENASFEQNG------------------NMIADFLLALYTSSYELLVKN 449

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++L    + E+ L  +   +   G  ID +   K+++ + ++ +KL  +I +      
Sbjct: 450 DIEKLFK--EVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEKEEKLLLEIYREAGEEF 507

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF   G+     ++    T   +L +  I       IL     +    
Sbjct: 508 -NVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLENLAIDYPFVKNILEYRTLAKLIS 566

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             L+ +   V  + +   T      + TGR S      QN+P                  
Sbjct: 567 TYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIP------------------ 608

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI
Sbjct: 609 ------VRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDI 662

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T ++ F  P ++V+ EQR+  K +   + Y               L           
Sbjct: 663 HRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLSKQL----------- 706

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                        +     +   K +  ++ G+ +  K +TE  
Sbjct: 707 ----------------------------GISRKKADEYIKTYLKRYPGIHEFMKKMTEEA 738

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               +                                R     D+           S   
Sbjct: 739 RKTGKVKTLF--------------------------GRYRDLPDINSKNF---QRRSFAE 769

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           R            +Q  + DI+   M          K    I+L VHDE+V E       
Sbjct: 770 RTAM------NTPIQGSAADIMKIAMIQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVE 823

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +   L   M    S    + L A+ +  K +
Sbjct: 824 EISKLLKETMESVVS--LKVKLVADVHVGKNW 853


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/657 (12%), Positives = 181/657 (27%), Gaps = 125/657 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           A I   A + D      +         +    ++ D         ++++     +    L
Sbjct: 357 ADIIGVAISSDKGN-FYYSAATIQNSTA-FADWISDPNQTK----AVYDAKKTMVTLNRL 410

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSID 141
           G+           + +       ++ +        ++++              F KG+  
Sbjct: 411 GLPCEGI-LFDFMLASYVLDPSQTIDDFASVASRYDYTQVEADELV-------FGKGAKY 462

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           + P +   A+H+    +     ++ V  + E  ++L  + + E  L  +   +   G R+
Sbjct: 463 NVPDETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVLAKMEMEGVRV 522

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D + + +++  +A   + ++  I +L  G   +      L + LF   G+  V  ++   
Sbjct: 523 DTERLEEMKSEMAVRLQTIESSIHELA-GTTFNINSPKQLGVILFETLGLPPVKKTKTGY 581

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L   +      D IL            +  L +          T      ++TG
Sbjct: 582 STAADVLESLSGKHPIIDEILLYRQLGKLQSTYVEGLLKVTDKKTSKVHTRFNQTLTQTG 641

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +    G K+ 
Sbjct: 642 RLSSVDPNLQNIP------------------------IRLEEGRKIRQVFVPSHPGWKMF 677

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E RVLA I+ ++  + AF N  DI+  T    F+    +V    R   K +  
Sbjct: 678 SADYSQVELRVLAHISQDENLVYAFRNDYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNF 737

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               L + + +        F  +   + +   +     E    + 
Sbjct: 738 GIVYG-----ISDYGLSQNLGITRKAAKDFIDRYFASYPDVKVYMEEIVRSAKEKGYVET 792

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556
           ++           R     +     ++        +      SA  +     L+M     
Sbjct: 793 ILHR---------RRYIPEITSRNFNVRSFAERTAMNTPIQGSAADIIKQAMLLMDERLE 843

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
              +      ++    +                                  +I       
Sbjct: 844 SEQMEAKLLLQVHDELIFEAPE----------------------------AEIAKLA--- 872

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         EI    PD           +M      A  +PLK +      +
Sbjct: 873 --------------EI---VPD-----------VMENAV--ALSVPLKVDSAHGDSW 899


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/622 (15%), Positives = 175/622 (28%), Gaps = 131/622 (21%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL 116
           +L DET   V H+S    + F    G  I       T + A           L +  L  
Sbjct: 380 WLADETRPKVLHDSKPAVLAFAAH-GWSIEGIT-RDTQIAAYLARPDQRSYDLVDLALRY 437

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              E           +     G+      +  +   ++A          D E +R+  + 
Sbjct: 438 LHRELRV-DTPDTGQLTFEGLGND----GEAEQNLMLRARATLDLADAIDAELSRDGEQS 492

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              ++  E  L  +  ++   G   D   + +L+   A E K   +   +       +  
Sbjct: 493 SRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYEAVGREF-NLG 551

Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILK 291
               L+  LF+  G+           T    L   +       L  +L     +      
Sbjct: 552 SPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTT- 610

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           ++ L ++VS DGR+  T     A  TGR S      QN+P                    
Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP-------------------- 649

Query: 352 TIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                       +R   +   G   L+ AD + IE R++A ++ +D  I AF +G D + 
Sbjct: 650 ----IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHA 705

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T +  F  P+++V+ +QR   K M                    GL             
Sbjct: 706 ATASSVFQVPVEEVTTDQRRKIKAMNY--------------GLAYGLS------------ 739

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 + +  +       + + + A   GV    +++      
Sbjct: 740 ------------------AFGLSQQLGVTAEEARGLMEIYFAGFGGVRDYLQEVVARARH 781

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                  +                           RR    D+  D         ++   
Sbjct: 782 DGYTETVL--------------------------GRRRYLPDLVSDNRQRREMAERM--- 812

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+   M               ++L VHDE+V E        +
Sbjct: 813 ------ALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDELVFEVAPGERERL 866

Query: 645 GTLCSL-MTKNPSWAKGLPLKA 665
             L    M +       +PL+ 
Sbjct: 867 EELVRREMGEAYP--LSVPLEV 886


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/511 (14%), Positives = 151/511 (29%), Gaps = 108/511 (21%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             E  ++L   +  ER L ++   +   G ++D + +  +Q  + +   +L+++I     
Sbjct: 3   ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG 62

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286
               +      L + LF    + ++  ++    T   +L          D IL     + 
Sbjct: 63  EEF-NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 121

Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                +  L + VS  DG+          + TGR S      QN+P              
Sbjct: 122 IQSTYIEGLLKVVSKKDGKAHTRYTQT-LTSTGRLSSVDPNLQNIP-------------- 166

Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +    G ++  +D + IE RVLA I+ +    +AF  
Sbjct: 167 ----------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKE 216

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G DI+ +T  + FN    D+V+   R   K +   + Y               + + +  
Sbjct: 217 GMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQ 271

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                 +  + +   + +   + +   E    + +            R     +     +
Sbjct: 272 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFN 322

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           L                                                     + +N+ 
Sbjct: 323 LRSFAER-----------------------------------------------TAMNSP 335

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                       K+    +Q    ++L E           ++L VHDE++ E P      
Sbjct: 336 IQG---SAADIIKVAMINMQ----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPL 383

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  +   +M         +PLK E    + +
Sbjct: 384 LEDMVPKVMDSAVK--LDVPLKVESKHGQTW 412


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 181/630 (28%), Gaps = 137/630 (21%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS---SL 109
            + L  +L D      AH+     +   +   +D+P       T++ A           L
Sbjct: 422 VAALGAWLADPNQPKAAHDVKGPMLALTE---LDLPLAGVTSDTALAAYLALPGQRSFDL 478

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +        +       G   +         S   D   A+ V+A          D + 
Sbjct: 479 ADLVARYLHRDLSADPVPGGQQLTLDG-----SGEADQAHADAVRARACLELADALDADL 533

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R     L+   D E  L  +   +   G  +D + + +LQ+    E   +     ++  
Sbjct: 534 ERRSAATLLR--DIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVG 591

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLA 283
               +      L+  LF   G+           T    L+         L   L+ +R  
Sbjct: 592 RPF-NLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDV 650

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +       +++L   +   GR+  T     A  TGR S      QN+P            
Sbjct: 651 ARLK--TVVDSLIPMIDDIGRIHTTFNQTIA-ATGRLSSADPNLQNIP------------ 695

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +   G   L+ AD + IE R++A ++G++  I+AF
Sbjct: 696 ------------IRTAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAF 743

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +GED++    A+AF  P+ +V  E R   K M              +     GL     
Sbjct: 744 GSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAM--------------SYGLAYGLS---- 785

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +          A+ A+  GV    +
Sbjct: 786 --------------------------AFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLR 819

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            + E           +                           RR    D+  D S    
Sbjct: 820 GVVERARKDGYTETIL--------------------------GRRRYLPDLTSDNSQRRQ 853

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSET 636
              ++              +Q  + DI+   M    +          ++L VHDE+V E 
Sbjct: 854 MAERM---------ALNAPIQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEI 904

Query: 637 PDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665
               + +V  L    MT    +   +PL  
Sbjct: 905 APGEHDAVERLVRAEMTSA--YTMSVPLDV 932


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 192/664 (28%), Gaps = 156/664 (23%)

Query: 39  DEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94
               +  D T         L  +L D  V    H +             D+  + W    
Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418

Query: 95  ---CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T++ A          +L +  L              K  +             D +
Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY-----------LKRELRADNPEQQQLSLLDDS 467

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRID 202
                QA Q         V+    L + L  +       + E  +  +   +   G  +D
Sbjct: 468 DGVDDQAVQTLLLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVD 527

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259
           L+++  LQ   A + +    +      G   +      L++ LF    +     ++    
Sbjct: 528 LEMLSGLQSEFADQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYT 586

Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
           T    L              +L    ++   +  ++ L  AV+SDGR+  T     A  T
Sbjct: 587 TDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNAVASDGRIHTTFNQTIA-AT 644

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376
           GR S      QN+P                            A   +R   +  +G  +L
Sbjct: 645 GRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFVVGDGYGEL 680

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++ ++  I+AF  GED++    ++AF+ PID+V+ E R   K M 
Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              GL                                   + + 
Sbjct: 741 YG--------------LAYGLS------------------------------AYGLSQQL 756

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           K+     +   + + A+  GV    +D+ +                              
Sbjct: 757 KISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVF------------------ 798

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    ++      +  A  +               +Q  + DI+   M N
Sbjct: 799 --------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAADIIKVAMIN 841

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             +           +L VHDE++ E  D    ++  L    M     +A  +PL+     
Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899

Query: 670 AKRY 673
            + +
Sbjct: 900 GRSW 903


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 192/664 (28%), Gaps = 156/664 (23%)

Query: 39  DEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94
               +  D T         L  +L D  V    H +             D+  + W    
Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418

Query: 95  ---CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T++ A          +L +  L              K  +             D +
Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY-----------LKRELRADNPEQQQLSLLDDS 467

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRID 202
                QA Q         V+    L + L  +       + E  +  +   +   G  +D
Sbjct: 468 DGVDDQAVQTLLLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVD 527

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259
           L+++  LQ   A + +    +      G   +      L++ LF    +     ++    
Sbjct: 528 LEMLSGLQSEFADQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYT 586

Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
           T    L              +L    ++   +  ++ L  AV+SDGR+  T     A  T
Sbjct: 587 TDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNAVASDGRIHTTFNQTIA-AT 644

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376
           GR S      QN+P                            A   +R   +  +G  +L
Sbjct: 645 GRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFVVGDGYGEL 680

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++ ++  I+AF  GED++    ++AF+ PID+V+ E R   K M 
Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              GL                                   + + 
Sbjct: 741 YG--------------LAYGLS------------------------------AYGLSQQL 756

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           K+     +   + + A+  GV    +D+ +                              
Sbjct: 757 KISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVF------------------ 798

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    ++      +  A  +               +Q  + DI+   M N
Sbjct: 799 --------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAADIIKVAMIN 841

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             +           +L VHDE++ E  D    ++  L    M     +A  +PL+     
Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899

Query: 670 AKRY 673
            + +
Sbjct: 900 GRSW 903


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/649 (14%), Positives = 178/649 (27%), Gaps = 148/649 (22%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICT 96
           D E        + SA    LL  L  E  + V           K+     +  +  +   
Sbjct: 361 DAEKAGFVP--KDSAAFPALLSLLESEKQVAVF--------GLKRYDQAGVRGQNDFFDI 410

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + A       S           E   K            +        D       +A 
Sbjct: 411 ELAAYLLEPERS------KYALPELSQKYL----------QEMAPESFADERSRAVWEAK 454

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            +   Y     +   E    L+     E  L  +   +   G  ++   + +  E +A  
Sbjct: 455 TISRLYPLLGAKLEEEELTHLMKTV--ELPLVEVLAAMEQNGVYVNRAHLAEKTEEVADR 512

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273
            + +++ I ++      +      L   LF    + +   ++    T   +L    +   
Sbjct: 513 LQTIEQSIYEMAGHTF-NLNSPKQLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHP 571

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             + IL     S      L+ ++  + +D GR+  +      + TGR S      QN+P 
Sbjct: 572 IVEQILAYRLWSKLKSTYLDGITGLIRTDTGRVHTSFNQTV-TATGRLSSSDPNLQNIP- 629

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAW 391
                                          +R+      G   L+ AD + IE R+LA 
Sbjct: 630 -----------------------VRTEEGRMIRALFEPGEGYDYLLSADYSQIELRLLAH 666

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++G++  I  F  G+DI+  T A+ F  P+++V+ E R   K +                
Sbjct: 667 MSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNF-------------- 712

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+     ++N+                               +           + 
Sbjct: 713 GIVYGISDFGLARNLH------------------------------ISRKEAGDYISRYF 742

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            ++ GV      +                                         RR    
Sbjct: 743 ERYPGVRAFMDKVVAEAHETGYVTTMF--------------------------GRRRELP 776

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIV 625
            +K           ++              +Q  + D++   M        + G    I+
Sbjct: 777 AIKSRNFNQRMLAERM---------AMNTPIQGTAADVIKLAMIAAYHRLKEAGVKSRIL 827

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDE+V E  ++    V  +    M      A  +PL  + +  + +
Sbjct: 828 LQVHDELVLEVVESELDVVQAILRESMEHVV--ALSVPLIIDIHWGRNW 874


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 176/659 (26%), Gaps = 136/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A         D T+ SA     L  +L D T   V H           + G  +   
Sbjct: 356 LAIADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGGKSVWHELA-SRGYSLEGV 414

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T + A           L +        E                 G          
Sbjct: 415 -VFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLSVGEDSEGGRLAV 473

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           RA  +            D  A          L++ E  L  +   +   G  +D+D + +
Sbjct: 474 RAAALTDLAEVLRGELGDRSAEPL-------LTELELPLSAVLVHMERHGIAMDVDYLRE 526

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSIL 265
           L++   +          ++    + +      L+  LF    +           T  + L
Sbjct: 527 LEQHFGELVTGAAASAYEVIGREV-NLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAAAL 585

Query: 266 SHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           +           K L+ +R ++       +  L ++V+ DGR+  T Q   A  TGR S 
Sbjct: 586 ADLFVKTEHPFLKFLLDHRDSTRLRQT--VEGLLKSVADDGRIHTTFQQTIA-ATGRLSS 642

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P                            A   +R   +  +G   L+ AD 
Sbjct: 643 TEPNLQNIP------------------------IRTEAGRRIRRAFVVGDGYETLLTADY 678

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++G++  I+AF  GED++    ++ F      V+   R+  K M   L Y
Sbjct: 679 SQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGLAY 738

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                   +      L++                                          
Sbjct: 739 G-----LSSFGLSNQLNIDV---------------------------------------K 754

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
               + + +  +  GV      + +           +                       
Sbjct: 755 EASKLMEDYFTRFGGVRTYLAGVVDEARANGYTATIM----------------------- 791

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               RR    D+  D         ++              +Q  + DI+   M    K  
Sbjct: 792 ---GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADIIKVAMLGVEKEI 839

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L VHDE++ E        + TL    M         +PL         +
Sbjct: 840 AVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMGSAADLL--VPLDVSVGTGSSW 896


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/651 (13%), Positives = 185/651 (28%), Gaps = 118/651 (18%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGID 87
           I    +  DD  V + +  +      DL+Q+L D+  +   +++   +   +    L ID
Sbjct: 344 ILKFGFYADDSHV-VINAEDIKQY-QDLVQWLEDKNTIKTVYDAKKTY---VAAHRLNID 398

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I + ++    + +       S+ +    ++           K  ++ + KG     P + 
Sbjct: 399 IQNVQF-DVMLSSYIIDPSRSIDDVKSVVSLYGQNY----VKDNVSVYGKGKKHQVPEEE 453

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               HV +        K ++EA  E + ++  L D E  L  +   + + G   D++ + 
Sbjct: 454 VLNKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLK 513

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           +++  I ++   L ++I +       +      L + LF    + ++  ++    T   +
Sbjct: 514 QMENEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDV 572

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L          + IL     S      +  L + +S D R+        A +TGR S   
Sbjct: 573 LEQLQGEHPIIEHILEYRQLSKLQSTYVEGLQKVISKDQRIHTRFNQTLA-QTGRLSSVD 631

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P                                +R           ++ AD + 
Sbjct: 632 PNLQNIP------------------------IRLEEGRKIRKAFKPTDKDSVILSADYSQ 667

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA I  ++   +AF NG DI+  T  K FN   ++V    R   K +   + Y  
Sbjct: 668 IELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGIVYG- 726

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +             +   + +   +          + L+    
Sbjct: 727 ----ISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAEGYVETLLHR-- 780

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                  R     +     +L               +                       
Sbjct: 781 -------RRYIPDITSRNFNLRSFAERTAMNTPIQGSAADII------------------ 815

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
              +L            N   +                            +         
Sbjct: 816 ---KLAMVKFYEKVKDTNYHATL---------------------------LLQVHDE--- 842

Query: 624 IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++ E P +        +  +M +       +PLK +      +
Sbjct: 843 --------LIFELPKSEVEDFSKFVEEIMEQALD--LDVPLKVDSSYGPTW 883


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/658 (14%), Positives = 186/658 (28%), Gaps = 146/658 (22%)

Query: 34  AYAWDDEP-----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           A A+ D+      V+L D + +      L Q+L  +      H +     +     GI++
Sbjct: 345 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLAG-RGIEL 400

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                  T++ A                                 R  + ++ +     +
Sbjct: 401 AGIA-HDTALAAYLLRPGQRTYALADVY----------------QRHLQKTLGAATEQLS 443

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +            +     T EL +       +D E  L  +   +   G  +D+D++
Sbjct: 444 LLDDSSLVDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 503

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
              ++   ++  + +    +L      +      L+  LF    +     ++    T   
Sbjct: 504 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 563

Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +            D +L            L  L + V  DGR+  T     AS TGR S
Sbjct: 564 EIEQLAAKNPHPFLDHLLAHREYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLS 621

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380
                 QN+P                            A   +RS  I  +G  +L+ AD
Sbjct: 622 STEPNLQNIP------------------------VRTEAGRQIRSAFIVGDGFDELMTAD 657

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RV+A ++ +   I+A+  GED++    ++ F+ P+D+V+ E R   K M     
Sbjct: 658 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYG-- 715

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          GL                                   + +  +  
Sbjct: 716 ------------LVYGLS------------------------------AFGLSQQLGIPA 733

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              + + +++  +  GV +   ++                                    
Sbjct: 734 GEAKSIMESYFERFGGVKKYLDEVVVQARKDGYTATLF---------------------- 771

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RR    ++  D         +               +Q  + DI+   M    + 
Sbjct: 772 ----GRRRYLPELNSDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDRA 818

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE+V E        V  +    M         +PL+      K +
Sbjct: 819 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 874


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/606 (14%), Positives = 155/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+D+P        +LA      ++  +                        
Sbjct: 354 DLAVLALREGLDLPPS--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 394

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A                E  K L    + E+ L  +   +
Sbjct: 395 ----------GEWTEDAAQRALLAERLQQNLLERLEGE-EKLLWLYREVEKPLSRVLAHM 443

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL- 253
              G R+D+  +  L   +  E K+L+E++ +L      +      L   LF    +   
Sbjct: 444 EATGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGHPF-NLNSRDQLERVLFDELKLPAL 502

Query: 254 VDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
               +     T  ++L          + IL     S      ++ L   V    GRL   
Sbjct: 503 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGLVHPRTGRLHTR 562

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 563 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKAF 597

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P++ V    
Sbjct: 598 VAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRM 657

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      + 
Sbjct: 658 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEG 712

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 713 GRQRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 759

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +                                   
Sbjct: 760 -----------------MKLAMVKLFPRLKETG--------------------------- 775

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 ++ E P     +V  L   +M      A  +PL+ E 
Sbjct: 776 --ARMLLQVHDE-----------LLLEAPKDRAEAVAALAKEVMEGVYPLA--VPLEVEV 820

Query: 668 YEAKRY 673
              + +
Sbjct: 821 GIGEDW 826


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/662 (12%), Positives = 182/662 (27%), Gaps = 147/662 (22%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF 80
           ++       I   + ++ +  +   ++         +      + ++ V    +++    
Sbjct: 331 LYIDITDNTINSMSLSYKEGTILYINKEHIIHALDLIKPLFSLDHILKV----MYDVKTL 386

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
            K +  D     +    +++ +  +   L +                   L     + + 
Sbjct: 387 FKIIQEDTNITAFDDILIMSYSLDV--GLHD-----------------HTLKNIIIRNTD 427

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                +                          ++ R+      E+ L  +   +   G  
Sbjct: 428 KHDITNENITASTLLSLHTALRRNLFTNQLCTIYYRI------EKPLINVLHNMEKIGIM 481

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---- 256
           ID  ++ KL    + +   L+E I KL+     +   +  L   LF   GI         
Sbjct: 482 IDGSILDKLSSTFSDKISVLEEKIYKLSGEEF-NIASSRQLSTILFDKMGIKKGKKLSSG 540

Query: 257 SEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
           +  T   +L           D IL     +       + L++ + ++     T     ++
Sbjct: 541 TYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTST 600

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                              + +R+  IA +G K
Sbjct: 601 VTGRLSSSNPNLQNIP------------------------IRSEEGNAIRNAFIAKSGYK 636

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A IA       AF+  +DI++ T  + FNT                
Sbjct: 637 LISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT---------------- 680

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                                                    ++ +  +         A +
Sbjct: 681 ------------------------------QNIDKKLRRKAKSINFGIIYGISPFGLAKQ 710

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  +      + +   +  +    +D+                               
Sbjct: 711 LGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVF----------------- 753

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     R+    D+  +   L   + +               +Q  S DI+   M 
Sbjct: 754 ---------GRKCFIKDINSNNHALRNFSERA---------AVNAPLQGTSADIIKMSMI 795

Query: 616 NATKN---GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
           +       GY ++L VHDE++ E P+     +V  +  +M         +PLK +     
Sbjct: 796 HLFDRLKTGY-MILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDITIGD 852

Query: 672 RY 673
            +
Sbjct: 853 NW 854


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/636 (15%), Positives = 170/636 (26%), Gaps = 144/636 (22%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             L ++L       + H+S     +       ++       T + A          SL N
Sbjct: 368 DALREWLA-GDHPKLVHDSKSAMHVLWNY-DFEL-VGVIHDTFLAAYLLRPSQRSYSLDN 424

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                               +      + D+           +      E     V A  
Sbjct: 425 VVQRHLGQTLSQAD----GQMTLLDGPAEDASHVAAVIDLAERLAVELDEAGLYSVYADL 480

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E+             L  +   +   G  +D+D + +L++         +     L D  
Sbjct: 481 EV------------PLAPVLGRMERAGIAVDVDALEELRKQAQAATDDAESAARNLVDKP 528

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SILSHSNITQLAKDLILNRLASS 285
             +      L+  LF   G+     ++    T       L+  N       L+  R +  
Sbjct: 529 ELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFRESQK 588

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
             +   +  L +AV+ DGR+  T     A  TGR S      QN+P              
Sbjct: 589 MKST--VEGLIKAVADDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP-------------- 631

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +   G  +L+ AD + IE RV+A ++ +   I+A+  
Sbjct: 632 ----------VRTEFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQ 681

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GED++    +K F   ID+V+ E R   K M                    GL       
Sbjct: 682 GEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYG--------------LAYGLS------ 721

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A +  +     + + + +  +  GV      +
Sbjct: 722 ------------------------AFGLAQQLDIPQREAKKLMEDYFERFGGVRDYLHKV 757

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E                              D        RR    ++  D      A 
Sbjct: 758 VEQARK--------------------------DGFTATMFDRRRYLPELNADN---RIAR 788

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
               R          + +Q  + DI+   M               ++L VHDE+V E  D
Sbjct: 789 DNAERAA------LNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVAD 842

Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++  L    M         +PL         +
Sbjct: 843 GEEAAIKELLHREMDSAAELL--VPLDVSIGAGVNW 876


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 114/666 (17%), Positives = 189/666 (28%), Gaps = 138/666 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTL 84
             +T  A A  D           +A P D   L  +L D +     H + +      +  
Sbjct: 363 GDVTALAIAASDGECAYI--AASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGR 419

Query: 85  GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           G  +       T++ A          +L +  L       L     G+  ++       D
Sbjct: 420 GWTL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRY-LKRELRAETSGQEQLSLL----DD 473

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +   D   A                +    E  +    LSD E  L +    I   G  +
Sbjct: 474 TEQLDAEAAETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIVV 533

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D   +  LQ   A +         ++      +      L++ LF    +     ++   
Sbjct: 534 DSAHLHDLQSRFASQVADAANSAYEVI-DKQINLGSPKQLQVVLFEELDMPKTKKTKTGY 592

Query: 259 GTLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
            T    L            + L+ +R A+       ++ L +AV+ DGR+  T     A 
Sbjct: 593 STDAEALQGLFDKTGHPFLEHLLAHRDATRMKVT--VDGLLKAVAEDGRIHTTFNQTVA- 649

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK- 374
            TGR S      QN+P                            A   +R   +   G  
Sbjct: 650 ATGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGFD 685

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PI++V+ E R   K 
Sbjct: 686 VLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVKA 745

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           M                    GL                                   A 
Sbjct: 746 MSYG--------------LAYGLS------------------------------AYGLAS 761

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
           + K+     +    A+ A+  GV      + E                            
Sbjct: 762 QLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLY---------------- 805

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+  D            R            +Q  + DI+   M
Sbjct: 806 ----------GRRRYLPDLNSDN---RQRREVAERAA------LNAPIQGTAADIIKVAM 846

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEG 667
            N  K          ++L VHDE+V E   +    V  L    M         +PL    
Sbjct: 847 INVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LSVPLDVSV 904

Query: 668 YEAKRY 673
              + +
Sbjct: 905 GTGRSW 910


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/400 (28%), Positives = 167/400 (41%), Gaps = 65/400 (16%)

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           K   +  A  +D R RG  QFYGA+RTGRW+G + Q QNLP+    +    + +  +   
Sbjct: 6   KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65

Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           ++      D     S  +R+  IA  G K  VAD + IEARV+A +AGE W+   F NG 
Sbjct: 66  DSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGG 125

Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           DIY  + ++ F+  ++K   +   R  GK+ ELALGY G     K M             
Sbjct: 126 DIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG------------ 173

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A++  L     + +  AWR  +  ++ LW D 
Sbjct: 174 ----------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWWDF 205

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581
                  ++               +        + I LPS R+L Y   +   +      
Sbjct: 206 DTAIKNAIK------MHCSTASHGIKFTWRSGMLLITLPSGRKLTYVKPRIGENKFGGES 259

Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                  AT +  R   YG K  EN+VQAISRD+L   MK    +   I   VHDE++ E
Sbjct: 260 VTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTL--SHCFICGHVHDELIIE 317

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
              +   S+  LC  M + P W   + L+A+GY  + Y+K
Sbjct: 318 C--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 352 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 392

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 393 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 441

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 442 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 500

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 501 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 560

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 561 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 595

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 596 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 655

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 656 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 710

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 711 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 757

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 758 -----------------MKLAMVKLFPRLEEMG--------------------------- 773

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 774 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 818

Query: 668 YEAKRY 673
              + +
Sbjct: 819 GIGEDW 824


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 356 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 396

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 397 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 445

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 446 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 504

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 505 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 564

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 565 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 599

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 600 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 659

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 660 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 714

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 715 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 761

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 762 -----------------MKLAMVKLFPRLEEMG--------------------------- 777

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 778 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 822

Query: 668 YEAKRY 673
              + +
Sbjct: 823 GIGEDW 828


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 564 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 598

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821

Query: 668 YEAKRY 673
              + +
Sbjct: 822 GIGEDW 827


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/667 (14%), Positives = 192/667 (28%), Gaps = 148/667 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  +  L  +L  +T + V     ++     +    
Sbjct: 345 DLVGFAWSCGDK----LYATDKLDLLQEPILKNFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSID 141
           L +++ +  +  + +         + +           +     +E       + KG   
Sbjct: 395 LDLNLQAPAF-DSRLAKYLLSTVENNEISTIASLYG--QTYMVDDE-----TFYGKGVKK 446

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           + P       H+ A ++        V         +L  L D E+ L  +   +   G +
Sbjct: 447 AIPEREKFLEHL-ARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIK 505

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVD 255
           +  + +L++Q       ++L ++I +L D    +      L + LF   G+         
Sbjct: 506 VKKETLLEMQAENEVVIEQLTQEIYELADEEF-NINSPKQLGVLLFEKLGLPLEYTKKTK 564

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    +      + +L + +  DG++         +
Sbjct: 565 TGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVSLQDWILDDGKIHTRYVQ-DLT 623

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374
           +TGR S      QN+P                                +R   +      
Sbjct: 624 QTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDS 659

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433
            L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R   K
Sbjct: 660 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAK 719

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +   + Y               L                                    
Sbjct: 720 AVNFGVVY-----GISDFGLANNL------------------------------------ 738

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  +  G+    +++                             
Sbjct: 739 ---GISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK-------------- 781

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+      +        R          + +Q  + DIL   
Sbjct: 782 ------------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIA 820

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666
           M    K          ++L VHDEIV E P +   +V  L    M +       +PL A+
Sbjct: 821 MIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAIQ--LSVPLIAD 878

Query: 667 GYEAKRY 673
             E   +
Sbjct: 879 ENEGATW 885


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 189/672 (28%), Gaps = 144/672 (21%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D           L  +L D       H +          
Sbjct: 353 AYDADATALAIVSADGEGRYIDTATLDPEDEAALASWLADPGPPKALHEAK-----LAMH 407

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL +  L     E   +  E       
Sbjct: 408 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRAENPE---QQQL 461

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L+     E  +  +   +
Sbjct: 462 SLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 519

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            + G  +DL+L+ +LQ   A   +    +      G   +      L+  LF    +   
Sbjct: 520 ENAGIAVDLELLTELQSDFAHLIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELEMPKT 578

Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
             ++    T    L              +L    ++   +  ++ L  +V+SDGR+  T 
Sbjct: 579 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 637

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                            A   +R   +
Sbjct: 638 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 672

Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
             +G  +L+ AD + IE R++A ++ ++  I+AF  GED++    ++AF  PI++V+ E 
Sbjct: 673 VGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAEL 732

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K M   L                GL     S  +K                     
Sbjct: 733 RRRVKAMSYGL--------------AYGLSAYGLSAQLK--------------------- 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    +     +   + + A+  GV      + E                      
Sbjct: 758 ---------ISTEEAKDQMEQYFARFGGVRDYLMAVVEQARKDGYTSTVF---------- 798

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RR    ++      +  A  +               +Q  + D
Sbjct: 799 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 833

Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           I+   M    K          I+L VHDE++ E        +  L    M         +
Sbjct: 834 IIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 891

Query: 662 PLKAEGYEAKRY 673
           PL+      + +
Sbjct: 892 PLEVSVGYGRSW 903


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/664 (15%), Positives = 187/664 (28%), Gaps = 156/664 (23%)

Query: 39  DEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94
           D   +  D T         L  +L D       H +             D+  + W    
Sbjct: 368 DGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAK-----LAMH---DLQGRGWTLAG 419

Query: 95  ---CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T++ A          +L +  L              K  +             D +
Sbjct: 420 VTSDTALAAYLVRPGQRSFALDDLSLRY-----------LKRELRADNPEQQQLSLLDDS 468

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRID 202
            A   QA Q         V+    L + L  +         E  +  +   +   G  +D
Sbjct: 469 DAVDDQAVQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVD 528

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259
           L ++ +LQ   A + +    +      G   +      L++ LF    +     ++    
Sbjct: 529 LAMLSELQSEFAGQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYT 587

Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
           T    L              +L    ++   +  ++ L  +V++DGR+  T     A  T
Sbjct: 588 TDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAADGRIHTTFNQTIA-AT 645

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-L 376
           GR S      QN+P                            A   +R   +   G   L
Sbjct: 646 GRLSSTEPNLQNIP------------------------IRTEAGRRIRDGFVVGEGYADL 681

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++ +   I+AF  GED++    ++AF+ P+D+V+ E R   K M 
Sbjct: 682 MTADYSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMS 741

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              GL                                   + + 
Sbjct: 742 YG--------------LAYGLS------------------------------AYGLSQQL 757

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
           K+     +   + + A+  GV    +D+ +                              
Sbjct: 758 KISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVF------------------ 799

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    ++               R            +Q  + DI+   M N
Sbjct: 800 --------GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIN 842

Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             +          ++L VHDE++ E  D    ++  L    M     +   +PL+     
Sbjct: 843 VDQAIKEAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGSA--YRLDVPLEVSVGY 900

Query: 670 AKRY 673
            + +
Sbjct: 901 GRSW 904


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 564 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 598

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821

Query: 668 YEAKRY 673
              + +
Sbjct: 822 GIGEDW 827


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/720 (13%), Positives = 190/720 (26%), Gaps = 172/720 (23%)

Query: 2   SKLFID--IETRSPQPLPKVGVWAYA-------------------EQAVITLCAYAWDDE 40
            ++ +D   E        +  + A A                     A +     +W++ 
Sbjct: 293 KEISLDNHTEDFVLLDTREALLEAVASIRAVGRLALFCHSTSQHPMLAQLKGLGLSWEEN 352

Query: 41  PVKLWDRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                    +     D+ + L     D  +  ++ +     +++ +  G  +        
Sbjct: 353 QGAYLPFQHRLTE-KDIWEILEPLWSDPGIAKISPDLKT-AMIWGERYGHPL-VGSVSDI 409

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + +                   +   +      L                  A      
Sbjct: 410 LLASYLLNPVR-----------FDQTIENVALLDLGLNLLSPRE---LAGRPLAASDLPL 455

Query: 157 QLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLV 206
           +L   Y     +A   L+ RL              D E  +  +   +  RG R+DLD +
Sbjct: 456 ELAIGYAAGRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAAMETRGIRVDLDFL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTL 261
            +    + +E   L+E+I ++        +    L   LF    +     ++      T 
Sbjct: 516 QRFGREVEKELASLEEEIHEMAGEPFL-IQSPPQLAAILFDRLQLPTQKKTKGRTAYSTD 574

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L+           ++            ++ L + V    GR+  T     A  TGR 
Sbjct: 575 NEVLTALADYHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGRIHTTFVQSVA-ATGRL 633

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                          G     +R   + S+G   +  D
Sbjct: 634 SSRDPNLQNIP------------------------VRGELGAQLRQAFLPSSGYIFISGD 669

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA  + +   ++AF  GED++  T A+ F    + VS+E R   KV+     
Sbjct: 670 YSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVIN---- 725

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+                                   A +  +  
Sbjct: 726 ----------FGIIYGMS------------------------------AFGLAKQLNVSQ 745

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +     + A+H GV + +    +           +                      
Sbjct: 746 RLAQDFINRYFARHTGVKRYFDQALDTARQKGWVTTLL---------------------- 783

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RR     +      L     +               +Q  + D++ + M      
Sbjct: 784 ----GRRRPIPHLHSSNRNLRQEAER---------SALNTPLQGSAADLIKKAMLAVEAA 830

Query: 621 GY------DIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L +HDE++ E P      +V  L   M          PL  +    + +
Sbjct: 831 LVHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAMEGVAQLRT--PLVVDIQTGENW 888


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/606 (14%), Positives = 150/606 (24%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G +IP        +LA       ++ +                        
Sbjct: 353 DLSVLALREGREIPPG--DDPMLLAYLLDPGNTNPEGVARRYG----------------- 393

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                              + WQ        +          L    + ER L  +   +
Sbjct: 394 ----GEWKEDAAARALLSERLWQALYPRVAEEERL-------LWLYREVERPLAQVLAHM 442

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL- 253
              G R+D+  +  L + +A E ++L+ ++ +L      +      L   LF   G+   
Sbjct: 443 EATGVRLDVPYLEALSQEVAFELERLEAEVHRLAGHPF-NLNSRDQLERVLFDELGLPPI 501

Query: 254 ---VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L            IL            ++ L   V    GRL   
Sbjct: 502 GKTEKTGKRSTSAAVLELLREAHPIVGRILEYRELMKLKSTYIDPLPRLVHPKTGRLHTR 561

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 562 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKAF 596

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G+DI+  T A  F  P + V    
Sbjct: 597 IAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGVDGAM 656

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 657 RRAAKTVNFGVLYGMSAHRLSQE-----LSIPYEEAAAFIERYFQSFPKVRAWIAKTLEE 711

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L G          R     +    K + E    +                 
Sbjct: 712 GRKKGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 758

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      L                            
Sbjct: 759 -----------------MKLAMVKLFPRLRPLGVRI------------------------ 777

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +         +VL        E P         L    M         +PL+ E 
Sbjct: 778 -----LLQVHDE---LVL--------EAPKARAEEAAQLAKETMEGVYP--LSVPLEVEV 819

Query: 668 YEAKRY 673
              + +
Sbjct: 820 GMGEDW 825


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/673 (15%), Positives = 190/673 (28%), Gaps = 146/673 (21%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83
           A  A  T  A    D   +  D +         L  +L D       H +          
Sbjct: 351 AYDADATALAIVSADGEGRYIDTSALQPDDEAALASWLADPGPPKALHEAK-----LAMH 405

Query: 84  LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
              D+  + W        T++ A          SL++  L     E   +  E       
Sbjct: 406 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAE---QQQL 459

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 D       +   ++A  +       D E  R     L  L   E  +  +   +
Sbjct: 460 SLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL--LGGMELPVQRVLAGM 517

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  +DL+L+ +LQ   A + +    +      G   +      L+  LF    +   
Sbjct: 518 EHTGIAVDLELLGELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQTVLFDELEMPKT 576

Query: 255 DMSEG---TLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
             ++    T    L            + L+ +R  +       ++ L  +V+SDGR+  T
Sbjct: 577 KRTKTGYTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVT--VDGLLASVASDGRIHTT 634

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A  TGR S      QN+P                            A   +R   
Sbjct: 635 FNQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAF 669

Query: 369 IASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           +  +G  +L+ AD + IE R++A ++ ++  I+AF  GED++    ++AF  PI +V+ E
Sbjct: 670 VVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIGEVTAE 729

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K M                    GL                              
Sbjct: 730 LRRRVKAMSYG--------------LAYGLS----------------------------- 746

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                + + K+     +    A+ A+  GV     ++ +           +         
Sbjct: 747 -AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLMNIVDQARKDGYTSTVL--------- 796

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR    ++               R            +Q  + 
Sbjct: 797 -----------------GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAA 830

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKG 660
           DI+   M    K          ++L VHDE++ E        +  L    M         
Sbjct: 831 DIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALAREKMGGAYP--LD 888

Query: 661 LPLKAEGYEAKRY 673
           +PL+      + +
Sbjct: 889 VPLEVSVGYGRSW 901


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 99/625 (15%), Positives = 173/625 (27%), Gaps = 131/625 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113
           L  +L D     V H+S   R+ F    G  +       T + A           L +  
Sbjct: 380 LAAWLADPARPKVLHDSKHARLAFA-ARGWSLAGVA-RDTELAAYLARPDQRSYDLTDLA 437

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L     E           +     G       +  +   +QA          D E +R+ 
Sbjct: 438 LRYLHRELRV-DAPETGQLTFDGLGDD----GEAEQNLMLQARATLDLADAIDAELSRDG 492

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            +    ++  E  L  +   +   G   DLD + +L+   A E K   +           
Sbjct: 493 EQSARLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYAAVGREF- 551

Query: 234 SSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHS--NITQLAKDLILNRLASSGSA 288
           +      L+  LF   G+           T    L            + +L     +   
Sbjct: 552 NLGSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHRDVAKLK 611

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ L ++VS DGR+  T +   A  TGR S      QN+P                 
Sbjct: 612 TT-VDGLLKSVSEDGRIHTTFKQTVA-ATGRLSSTDPNLQNIP----------------- 652

Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   +   G   L+ AD + IE R++A ++ +D  I+AF +G D
Sbjct: 653 -------IRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHD 705

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            +  T +  F  P+ +V+ +QR   K M                    GL          
Sbjct: 706 FHAATASSVFGVPVAEVTADQRRKIKAMNY--------------GLAYGLS--------- 742

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    + +  +       +   + A   GV    +++   
Sbjct: 743 ---------------------AFGLSQQLGITAEEARGLMDNYFAGFGGVRDYLQEVVAR 781

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +                           RR    D+  D         ++
Sbjct: 782 ARHDGYTSTIL--------------------------GRRRYLPDLVSDNRQRRDMAERM 815

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641
                         +Q  + DI+   M               ++L VHDE+V E      
Sbjct: 816 ---------ALNAPIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGER 866

Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKA 665
            ++  L    M +       +PL+ 
Sbjct: 867 DTLEALVRSQMGEAYP--LSVPLEV 889


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/602 (15%), Positives = 168/602 (27%), Gaps = 145/602 (24%)

Query: 88  IPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           I S R   T V A       S   +         SE                    D  P
Sbjct: 436 IDSDRLFDTGVAAYLLESDRSSFDINGLVELYFGSELP---------------EPTDEIP 480

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               RA   +A          D + + ELF  L      E  L  +   +  RG  +D  
Sbjct: 481 AAALRAVAARALVPVLTKKLED-DGSLELFTSL------EMQLLPVLAAMERRGLYVDPQ 533

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------ 258
            + +    + ++  +    I +       +      L   LF +  +    + +      
Sbjct: 534 KLAEQSAQLGEDIAQRVASIHQTAGEDF-NLDSPSQLSHILFDVLKLPTYGLKKTRTGFY 592

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            +L     +      L+ L   +  D R+  TL     + TG
Sbjct: 593 STNAKVLGELAQEYQIVADVLEYRERAKIKSTYLDALPSLIRGDKRIHTTLNQTV-TATG 651

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                VR+      G   + 
Sbjct: 652 RLSSSDPNLQNIP------------------------TRSELGHRVRTAFTVPEGSVFLA 687

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA ++ ++  + AF +G D +  T A+ F  P+++V+   R+        
Sbjct: 688 CDYSQIELRLLAHLSADEHLVAAFNSGADFHAATAARVFGVPVEEVTPALRSRA------ 741

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                 +A +  +    Q    A   K+
Sbjct: 742 --------------------------------------KAVNFGIVYGQQAFGLATSLKI 763

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                + +   +   + GV      L +      + G +I+                   
Sbjct: 764 SRKEAQEMIDRYFDAYPGVRAY---LDDSVRTAHECGYAITMY----------------- 803

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  R+     ++          +   R          + +Q  + DI+   M N  
Sbjct: 804 ------GRKRH---IREFNQSNRQLIAFGERTAM------NHPMQGSAADIIKIAMINVE 848

Query: 619 KNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          ++L +HDE+  E P++   +V TL    M    +    +PL A+     
Sbjct: 849 KRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDVVT--LRVPLIADVSYGS 906

Query: 672 RY 673
            +
Sbjct: 907 NW 908


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 168/703 (23%), Positives = 276/703 (39%), Gaps = 85/703 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           LF+D E  S   L + G+  Y +        + +    +   D  E    +P  ++ +L 
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEVGQPVPKQIVGHLN 65

Query: 63  DETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114
                 VAHN+ F+     ++ ++  G     +I   +  C++  AR NGLP SL  AC 
Sbjct: 66  --GSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 123

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
           AL       K  EG    A++ K    +P  D T A+H + +    +Y   D +A   ++
Sbjct: 124 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVGVW 175

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           +  +PL    +  + +D  IN RG   D++    +++L A    +LD ++  LTDG I +
Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             +   ++ Y     G D+ D    TLK I +  N+    + LI  RL +S +       
Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 294

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQALNR 349
           L   V   GRL+    ++GA   GR +              PR  +        + A  R
Sbjct: 295 LRAHVG--GRLQHHTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 351

Query: 350 GETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
           G+            +       R    A   G  LV ADL+GIEARV  W+A +  K++A
Sbjct: 352 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEA 411

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G D Y       ++   D V+K+QR +GK  +LALG+ GG   F +MA++ G+ L  
Sbjct: 412 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLPP 471

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
              +                                        +   WRA      + W
Sbjct: 472 EQVS---------------------------------------EIVYNWRAGRPAFERWW 492

Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574
                     + + G   +      N  ++   +  R + + LPS R + Y + +     
Sbjct: 493 SLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 552

Query: 575 GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
           G    +           T   K+   N  Q ++RD+    + +  +   +IV  V+DE +
Sbjct: 553 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDEAL 611

Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            E   +        L   M +  +W  GLPL AEG+   R+RK
Sbjct: 612 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 183/653 (28%), Gaps = 124/653 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIP 89
            A A+ +E        + +       ++L D +V        F+     +     G D+ 
Sbjct: 340 IAVAFGNEKNVFVTDLDTAVASEVFKKWLSDASVEKHL----FDTKAAKVLAHRFGFDLK 395

Query: 90  SKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
             ++   S+LA           + +    ++    L+  E       +            
Sbjct: 396 GAKY-DVSLLAYLVDTNDIVKEISDVARRVDV-TILSSDEAVYGKGVKIQIPEDKEV--- 450

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +    + + +     K            L    + E  L  +   +  +G R+D + +
Sbjct: 451 WNQHLAAKVFTIAKAPEKLLKRLEENEQTHLY--WEMELPLSDILARMEIQGIRVDRERL 508

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
           +++     +  K+++++I +L      +   T  L + LF   G+ ++  ++    T   
Sbjct: 509 VEMGVEFEERLKEIEQEIYELAGEEF-NINSTKQLGVILFEKMGLPVIKKTKTGYSTAVD 567

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          +LIL     +      +  L   +  DG++         ++TGR S  
Sbjct: 568 VLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGKIHTRFIQN-LTQTGRLSSV 626

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382
               QN+P                                +R   +   +  K++ +D +
Sbjct: 627 DPNLQNIP------------------------IRTKEGRRIRYAFLPEHDDWKILSSDYS 662

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGY 441
            IE RVLA IAG+   I+AF N  DI+  T  + F     D V+ E R   K +   + Y
Sbjct: 663 QIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVY 722

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L++ +           E+++  +     +  +  E    + L   
Sbjct: 723 G-----ISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHR 777

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                    R     +     +L               +               +   I 
Sbjct: 778 ---------RRYLPDIHSSNFNLRSFAERTAMNSPIQGSAADIL----------KMAMIE 818

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
           L    R                                              +       
Sbjct: 819 LDREMRERKFKANL--------------------------------------LLQVHDEL 840

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V    DE+          S+ +L   +M    S    +PL+A+      +
Sbjct: 841 IFEVPQ--DEL---------ESLQSLVEGVMENAVS--LKVPLRADSNVGDNW 880


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +         ++A       ++ +                        
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193
                               A +      +        L ++L     + ER L  +   
Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG R+D+ L+  L   + +E ++L+ +I +L      +      L   LF   G+  
Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEIFRLAGHPF-NLNSRDQLERVLFDELGLTP 502

Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +  T +  L          +LIL     S      L+ L   V    GRL  
Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                 A+ TGR S      QN+P                                +R  
Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G  L+ AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  +
Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y   A           L +            F+ + +  +      +
Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G          R     +    + + E    +                
Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +      L                           
Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 +         +VL        E P+        L   +M         +PL+ E
Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820

Query: 667 GYEAKRY 673
               + +
Sbjct: 821 VGVGRDW 827


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 186/673 (27%), Gaps = 144/673 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLF 75
              G  AYA        A A       L D  + SA     L  +L  E    + H +  
Sbjct: 331 KPAGGDAYA-------LAIADTKHHAVLVDLADISAEDEKALATWLASEN-PKMLHGAKA 382

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
              +     G ++       T++ A                            + L  + 
Sbjct: 383 AYHMLAG-RGFELHGV-VHDTAIAAYLLRPGQRTYELADVYQ-----------RHLQRQL 429

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQT 193
                         A+            +   E T++L   +      D E  L  +   
Sbjct: 430 STNDNGGQLALLDAADDQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILAR 489

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  +D+  + +  +    +  + +E   +L +    +      L++ LF   G+  
Sbjct: 490 MEAIGIAVDVATLEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPK 549

Query: 254 VDMSEG-----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
              ++        +             D +L            L  L   V+ DGR+  T
Sbjct: 550 TKKTKTGYSTAAAEIEALAIKNPHPFLDHLLAHRQYQKMKTT-LEGLIREVAPDGRIHTT 608

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                AS TGR S      QN+P                            A   +RS  
Sbjct: 609 FNQTVAS-TGRLSSTDPNLQNIP------------------------VRTEAGRKIRSGF 643

Query: 369 IASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
           +   G   L+ AD + IE RV+A ++ +   I+A+  GED++    +K FN PID V+ E
Sbjct: 644 VVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPE 703

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K M                    GL     SQ +   +                 
Sbjct: 704 LRRQVKAMSYG--------------LVYGLSAFGLSQQLSIPAG---------------- 733

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                           + + +++  +  GV +  +++ E                     
Sbjct: 734 --------------EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLF--------- 770

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR    ++  D      A     R            +Q  + 
Sbjct: 771 -----------------GRRRYLPELTSDN---RVARENAERAA------LNAPIQGTAA 804

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKG 660
           DI+   M    ++         ++L VHDE+V E        V  +    M         
Sbjct: 805 DIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LS 862

Query: 661 LPLKAEGYEAKRY 673
           +PL+    +   +
Sbjct: 863 VPLEVSAGDGVNW 875


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 181/656 (27%), Gaps = 142/656 (21%)

Query: 34  AYAWDDEP-----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           A A+ D+      V+L D + +      L Q+L  +      H +     +     GI++
Sbjct: 348 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLAG-RGIEL 403

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                  T++ A                           G A                  
Sbjct: 404 AGIA-HDTALAAYLLRPGQRTYALADVYQRHLQK---TLGAATEQLSLLDDSSLVDQAAA 459

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                +         +     + EL+  L      E  L  +   +   G  +D+D++  
Sbjct: 460 ILELAE-----RLSAELQEIDSFELYTDL------ELPLVTILARMEATGIAVDVDILET 508

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
            ++   ++  + +    +L      +      L+  LF    +     ++    T    +
Sbjct: 509 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 568

Query: 266 SHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                       D +L            L  L + V  DGR+  T     AS TGR S  
Sbjct: 569 EQLAAKNPHPFLDHLLAHREYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSST 626

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLA 382
               QN+P                            A   +RS  I  +G  +L+ AD +
Sbjct: 627 EPNLQNIP------------------------VRTEAGRQIRSVFIVGDGFDELMTADYS 662

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RV+A ++ +   I+A+  GED++    ++ F+ P+D+V+ E R   K M       
Sbjct: 663 QIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYG---- 718

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        GL                                   + +  +    
Sbjct: 719 ----------LVYGLS------------------------------AFGLSQQLGIPAGE 738

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            + + +++  +  GV +   ++                                      
Sbjct: 739 AKSIMESYFERFGGVKKYLDEVVVQARKDGYTATLF------------------------ 774

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    ++  D         +               +Q  + DI+   M    +   
Sbjct: 775 --GRRRYLPELNSDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDRALQ 823

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E        V  +    M         +PL+      K +
Sbjct: 824 GMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 877


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/653 (13%), Positives = 191/653 (29%), Gaps = 123/653 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
             +A  +  V  +   + S +   +L   + +E ++    N    +++  K LG+ +   
Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKA-QLVLFKRLGLALKGV 406

Query: 92  RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +    ++A      ++   L       +      +   GK    +F   +  +      
Sbjct: 407 NF-DFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGA--KFTVPTDTNLLLSHV 463

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                  ++L             +  ++    +D E  L  +   +  +G +++ + +  
Sbjct: 464 AHKADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRN 518

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
             + +++    + +  + +  G   +      L + LF   G+ ++  ++    T   +L
Sbjct: 519 KGKDLSERIADI-QSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVL 577

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                     D IL     +      ++ L   +   D ++         ++TGR S   
Sbjct: 578 EKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQT-LTQTGRLSSVD 636

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P                                +R+  +      ++  AD + 
Sbjct: 637 PNLQNIP------------------------MRSEEGRLIRTAFVPSHPNWQIFGADYSQ 672

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ 442
           IE RVLA + G+    KAF NGEDI+  T    F    D  V   +R   K +   + Y 
Sbjct: 673 IELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIVYG 732

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L + +        + F+++ Q       ++    E    + +    
Sbjct: 733 -----ISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHR- 786

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   R     +     +L        +      SA  +  +  + +          
Sbjct: 787 --------RRYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVN--------- 829

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                                              L EN +QA         +       
Sbjct: 830 ---------------------------------EALRENNLQA-------RMLLQVH--- 846

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   DE++ ETP      +  +  ++M      A  +PLK + +    +
Sbjct: 847 --------DELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/543 (15%), Positives = 154/543 (28%), Gaps = 130/543 (23%)

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +   +    +  +  +   EY +  + A  EL             L  +   + + G   
Sbjct: 39  ASIIEAVSESKAEMQKQLKEYNQESLLADLEL------------PLAEILSEMEEIGIFT 86

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D+  + ++++ I ++   L ++I +       +      L + LF    + ++  ++   
Sbjct: 87  DVKDLQQMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKTGY 145

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L          D IL     S      +  L + +S D R+        A +TG
Sbjct: 146 STAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISDDHRIHTRFNQTLA-QTG 204

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R      S+   ++
Sbjct: 205 RLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSSDSVIL 240

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA I  ++   +AF NG DI+  T  K F+   D+V    R   K +  
Sbjct: 241 SADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNF 300

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     SQ+                                
Sbjct: 301 --------------GIVYGISDYGLSQS------------------------------LG 316

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +     GV Q   D+ +           +  RR               
Sbjct: 317 ITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETLLHRRRYIPDITSRNFNL--- 373

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                             + + +NT                   +Q  + DI+   M   
Sbjct: 374 --------------RSFAERTAMNT------------------PIQGSAADIIKLAMVQF 401

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670
            K          ++L VHDE++ E P     S    +  +M         +PLK +    
Sbjct: 402 NKEVQHTDYHAKLLLQVHDELIFEVPKDEVASFSKFVEEIMESALK--LDVPLKVDSSYG 459

Query: 671 KRY 673
             +
Sbjct: 460 ATW 462


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 100/686 (14%), Positives = 176/686 (25%), Gaps = 148/686 (21%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQYLRDET 65
           T+    +   G+  +   A +   A+A+                     + L    +   
Sbjct: 363 TKWAFDIATTGMDPHL--ADLLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTD 420

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           V+ V HN     I+ ++  G+ I       T +          L  A +  + +      
Sbjct: 421 VLKVGHNLKNALIVMQRH-GLSIAP-PLFDTMIA-------HGLVAADMDHHLTTLSE-- 469

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-- 183
                        S   PP    + +     +    Y     +    ++ ++        
Sbjct: 470 -------QYLNHRSYLKPPNRAEKES-----EGIKNYAGEGADLVLHIYPKIAQALREHK 517

Query: 184 --------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                   E  L  +   +   G  IDL  +  L   +    K L E I  L      + 
Sbjct: 518 VATLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQTTF-NI 576

Query: 236 RQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                L + LF    +             T ++IL+  +       LI+           
Sbjct: 577 DSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYRTWQKLRST 636

Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++ L   +   D RL  T      + TGR S      Q +P                  
Sbjct: 637 YVDALPTLLHPIDQRLHATYHQTVVT-TGRLSATGPNLQQIP------------------ 677

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   I    G  L  AD + IE R++A  A +   I AF + +DI
Sbjct: 678 ------IRTPTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQDI 731

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T  K F T I  V +E R   K+    + Y                 L +       
Sbjct: 732 HQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLS----ERMEHLSRKEAAELI 785

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            + FE +   +++                L+G    L           +           
Sbjct: 786 EAYFEAFPGIKTYIDDSIAHAEANGYVRTLLGRKRFL---------PDLYASNPTTRGVA 836

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                            + +NT      
Sbjct: 837 RR-----------------------------------------------NAINTPIQG-- 847

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TL 647
                  KL    +Q    D          K    +++ VHDE+V   P +    +   +
Sbjct: 848 -SAAEMIKLAMIHIQ----DW-----LEKHKLSTKLIIQVHDELVFNVPRSEIADIQHHI 897

Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673
             LM       + +P+K        +
Sbjct: 898 PLLMATALPL-ENVPIKVNWNIGANW 922


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 99/584 (16%), Positives = 168/584 (28%), Gaps = 131/584 (22%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K     L       +  E   LIA       D+   + +          + +       A
Sbjct: 381 KALATHLQVRGVSVEPGEDPLLIAYLL----DNTVTNASLLAQAHLGAPWPDDAPTRALA 436

Query: 170 TRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           T +L   L P  D          ER L  +   +  RG R+D   +  L + +    ++L
Sbjct: 437 TAQLLTALRPQLDEKRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARAQEL 496

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAK 275
           D  I +L      S      L   L+   G+     ++      T  S L          
Sbjct: 497 DARIQELAGHPF-SVNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEHPII 555

Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            L+L     +      L+ L   V+   GRL  T     A  TGR S      QN+P   
Sbjct: 556 PLLLEYRELTKLKGTYLDPLPNLVNPLTGRLHTTFAQT-AVATGRLSSLNPNLQNIP--- 611

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   IA +G  L+ AD + IE R+LA IA 
Sbjct: 612 ---------------------IRSETGREIRKGFIADDGFCLISADYSQIELRLLAHIAD 650

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +AF  G DI+  T A+      D V+  QR   K +                   
Sbjct: 651 DALMQEAFVGGADIHRRTAAQVLGVMEDLVTPNQRRAAKTVN--------------FGVL 696

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G+   + S +                                +         + + A +
Sbjct: 697 YGMSAHRLSND------------------------------LGISFAEASRFIERYFATY 726

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             + +                               +   +   ++     RR +  +++
Sbjct: 727 PRIREYIDA--------------------------TLAFGREHGYVETMYGRRRLVPELR 760

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHD 630
                +  A  ++              +Q  + DI+   M    +     G  ++L VHD
Sbjct: 761 SANRTMREAGERV---------AYNMPIQGTAADIIKIAMVELDEQLSALGARLLLQVHD 811

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ E P      V  L   +M    +    +PL+ E      +
Sbjct: 812 ELLIEAPSDRADEVAALTRRVMEGVVT--LKVPLRVEIGTGPNW 853


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 97/647 (14%), Positives = 190/647 (29%), Gaps = 151/647 (23%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTNGL---PS 107
             L ++L+D     V H+      +          I+        T + +          
Sbjct: 381 DALKEWLQDPDHPIVVHDGKGLLHMLSSEGLTATNIE------HDTRLASYLIHPDFGSF 434

Query: 108 SLKNACLALNFSEHLTKMEE--------GKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
            L++        +               G+ +       S D              W   
Sbjct: 435 DLESVVRRRLGRDLYDSDVVSWEEEHRSGRQMSLDVGDLSSDGDDDRSVAGISWPEWAKL 494

Query: 160 GEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            ++ +  +E   EL K+L          + E  L  +   +   G +++ + +  L++  
Sbjct: 495 ADHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMTALRDST 554

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILS 266
           A++  K  E+   L D    +      L+  LF    +     ++         ++ +  
Sbjct: 555 AEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTGYSTAAKAIERLAE 614

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                 L   L+ +R      +   L+ L +A++SDGR+  T     A+ TGR S     
Sbjct: 615 KHPHPFLDH-LLAHREYQKRVST--LDGLIKAIASDGRIHTTFNQT-ATATGRLSSTDPN 670

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIE 385
            QN+P                                +R+  +   G + L+ AD + IE
Sbjct: 671 LQNIP------------------------VRTEEGRQIRAAFVPGEGYEALLTADYSQIE 706

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RV+A  + +   I+A+ +GED++    ++ F+ P+++V+ E R   K +   L Y    
Sbjct: 707 MRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLVYG--- 763

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                      LD                                       +     + 
Sbjct: 764 --LSEYGLSQQLD---------------------------------------ISVREAKK 782

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           +   +  +  GV +   ++ +           +                           
Sbjct: 783 IMVKYFERFGGVRRYLNEVVDRARKDEYTSTML--------------------------G 816

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------K 619
           RR   SD+         A     R            +Q  + DI+   M          K
Sbjct: 817 RRRYLSDLASLN---RQARENAERAA------LNAPIQGTAADIIKVAMIRVDAALKKEK 867

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665
               ++L VHDE+  E  +     V  +    M +    A  +PL+ 
Sbjct: 868 LASRVLLQVHDELDVEVANGELEQVRGIIQREMDEAIELA--VPLEV 912


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +         ++A       ++ +                        
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193
                               A +      +        L ++L     + ER L  +   
Sbjct: 400 ----------------FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAH 443

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG R+D+ L+  L   + +E ++L+ ++ +L      +      L   LF   G+  
Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLEKVLFDELGLTP 502

Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +  T +  L          +LIL     S      L+ L   V    GRL  
Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                 A+ TGR S      QN+P                                +R  
Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G  L+ AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  +
Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y   A           L +            F+ + +  +      +
Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G          R     +    + + E    +                
Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +      L                           
Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 +         +VL        E P+        L   +M         +PL+ E
Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820

Query: 667 GYEAKRY 673
               + +
Sbjct: 821 VGVGRDW 827


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/635 (14%), Positives = 176/635 (27%), Gaps = 138/635 (21%)

Query: 57  LLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
             ++L   + + V     ++     +    LG+++ +  +  + +         +     
Sbjct: 6   FKEFLEKTS-LKV-----YDFKKAKVLLNRLGLNLQAPAF-DSRLAKYLLSTVEN-NEIS 57

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RE 172
              +                 + KG   + P       H+ A ++        V      
Sbjct: 58  TIASLYSQTY----LVDDETFYGKGVKKAIPEREKFLEHL-ARKVAVLVETEPVLLEKLS 112

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              +L  L D E+ L  +   +   G ++  + +L++Q       ++L ++I +L     
Sbjct: 113 EHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEF 172

Query: 233 RSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +      L + LF   G+             T   +L            IL+    +  
Sbjct: 173 -NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKI 231

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L + +  DG++         ++TGR S      QN+P                
Sbjct: 232 QSTYVIGLQDWILDDGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP---------------- 274

Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   +       L+ +D + IE RVLA I+ ++  IKAF  G 
Sbjct: 275 --------VRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGA 326

Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           DI+ +T  + F     + V+   R   K +   + Y               L        
Sbjct: 327 DIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVY-----GISDFGLANNL-------- 373

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                           +     +     +  +  G+    +++ 
Sbjct: 374 -------------------------------GISRKKAKAYIDTYFERFPGIKNYMEEVV 402

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                   RR    D+      +     
Sbjct: 403 REARDKGYVETLFK--------------------------RRRELPDINSRNFNIRGFA- 435

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639
              R          + +Q  + DIL   M    K          ++L VHDEIV E P +
Sbjct: 436 --ERTAI------NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKS 487

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
              +V  L    M +       +PL A+  E   +
Sbjct: 488 ELAAVKDLVKQTMEEAIQ--LSVPLIADENEGATW 520


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/560 (14%), Positives = 144/560 (25%), Gaps = 125/560 (22%)

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           SLK             +   GK  I      +     +    A   +             
Sbjct: 524 SLKEGKEQEKTEPVREEQTAGKVSIRTALNPAEQCICHMAYTAWKSRERLTKKLEELDMK 583

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           E    +          E  L      +   G  +  + +    E +  + ++L+++I   
Sbjct: 584 ELFYTI----------EMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY-G 632

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
             G   +      L   LF    +     ++    T   +L            IL+    
Sbjct: 633 ETGEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQL 692

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +       + L+  +  DGR+ GT      + TGR S      QN+P             
Sbjct: 693 TKLKSTYADGLAGYIREDGRIHGTFNQT-ITATGRLSSTEPNLQNIP------------- 738

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +   G   V AD + IE RVLA ++G++  I+A+  
Sbjct: 739 -----------VRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRK 787

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            EDI+  T ++ F+ P+++V+  QR   K +                    G+       
Sbjct: 788 AEDIHAITASEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS------ 827

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       +    +           +   +  V +    L
Sbjct: 828 ------------------------AFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRL 863

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E              RR                        +       G+   +    
Sbjct: 864 VEEGKEKGYVTTMFKRRRPVPELSS-----------------KNFMQRSFGERVAM---- 902

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
                          + +Q  + DI+   M               IVL VHDE++ E   
Sbjct: 903 --------------NSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIEAKK 948

Query: 639 TPYFSVGTLC-SLMTKNPSW 657
                V T+    M      
Sbjct: 949 EELKRVQTILSEEMKHAADL 968


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/656 (13%), Positives = 168/656 (25%), Gaps = 137/656 (20%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LF--KKTLGIDIPSK 91
            A   +        +       +  YL  +    V     ++   +    K  GI   + 
Sbjct: 334 IAVYKDENVYIFSEDNFFENKFVRNYLESDAEKVV-----YDYKKILYIAKRNGISDIAG 388

Query: 92  RWICTSVLARTNGLPSS--LKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                 + +    +     L       L       +   GK +        I        
Sbjct: 389 NVFDVKIASYLLDVTVKTELDKIVFNTLGNIIKSEEEIYGKGVKRTLPTNEIL------Y 442

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                    +F     +      E    L      E  +  +   +   G  +    +  
Sbjct: 443 PYLAQVVKSIFDLKEIQSARLKEENMDSLYKNI--EVKVARVLANMEYEGIHVSKKALED 500

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
           + + + +  K L+  I  L      +      L + LF   G+  V  ++    T   +L
Sbjct: 501 MSDELDERIKILEASIHTLAGSEF-NIASPKQLGIVLFEDLGLPPVKKTKTGYSTSVEVL 559

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                +     LI+     +         L + ++  G++    +    ++TGR S    
Sbjct: 560 EQLQHSHEIIPLIMEYRVLTKLNSTYAKGLVKDITRKGKIHTRYEQT-LTQTGRLSSVNP 618

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384
             QN+P                                +R   I  S+ + ++  D + I
Sbjct: 619 NLQNIP------------------------TRIEEGKKIRKAFIPASDDRVILSIDYSQI 654

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA +A +   I AF +  DI+  T ++     +D+V+   R   K +   + Y   
Sbjct: 655 ELRVLAHMAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVYG-- 712

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L                                        +     +
Sbjct: 713 ---ISDFGLSNNL---------------------------------------GITRKRAK 730

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                +     GV +   D+ E            +                         
Sbjct: 731 EFIDKYLETFSGVNKYMTDIVEFAKEHGYVETLYN------------------------- 765

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
            RR    ++              +             +Q  + DI+   M NA      T
Sbjct: 766 -RRRALPEINAKN---------KIVASLNARLAMNTPIQGTAADIIKLAMINAFDYIEKT 815

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L VHDE++ +            +  +M +       + LKAE      +
Sbjct: 816 KVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEAVE--LDVKLKAEASSGSSW 869


>gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
 gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
          Length = 886

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/652 (12%), Positives = 174/652 (26%), Gaps = 119/652 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +   D    L  R       + L + L D  V     N+  + +   + LG+D+   
Sbjct: 339 LAGFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGV 397

Query: 92  RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +    + +       +  +                +   GK               +  
Sbjct: 398 DF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 456

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +A  ++  +    Y +        L++      D ER L  +   +   G  +D   + 
Sbjct: 457 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 509

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++   + +   +L++ I +       +      L + LF    + ++  ++    T   +
Sbjct: 510 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 568

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L            IL     S      +  L + +  D +   T      + TGR S   
Sbjct: 569 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 628

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R     S  G K+  +D + 
Sbjct: 629 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 664

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442
           +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R   K +   + Y 
Sbjct: 665 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 724

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         + + +   +    S F+++   E +   + +   +    + L    
Sbjct: 725 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 778

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +             +                            I +
Sbjct: 779 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 815

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              R       +G  + +                                 +        
Sbjct: 816 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 839

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   E+V E P+    ++  L  S+M         +PLK E      +
Sbjct: 840 --------ELVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/619 (13%), Positives = 176/619 (28%), Gaps = 118/619 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
            +   L D  +     N  F+     +    LGI + +  +    + +       +  + 
Sbjct: 366 KIKAILEDPKIKI---NV-FDSKRTYVGLHRLGIKLTAVNF-DILLQSYLLDTNDNSNDL 420

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L        ++        + KG+  + P      NH+        +  + ++    
Sbjct: 421 G-QLAHEHDYDAIDT---DDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELV 476

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++     D E  L ++   +   G ++D + + ++Q    +   +++ +I        
Sbjct: 477 KNEQNNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAGEEF 536

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L + LF    + ++  ++    T   +L          D ILN    S    
Sbjct: 537 -NLNSPKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYRTLSKIKS 595

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L + + +      T      ++TGR S      QN+P                  
Sbjct: 596 TYVDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIP------------------ 637

Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   +    G  ++ +D + IE RVLA I G+    +AF NGEDI
Sbjct: 638 ------VRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDI 691

Query: 409 YVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           + TT  K F      +V+   R   K +   + Y               + + +      
Sbjct: 692 HATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKDAKKF 746

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             + F+++   + +         E    + +            R     +     +L   
Sbjct: 747 IETYFKEFPGVKKYIDESVQLAKEQGYVETIAHR---------RRYLPDINSSSFNLRSF 797

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                       +                          ++   D++ +    N      
Sbjct: 798 AERTAMNTPIQGSAADII---------------------KIAMIDMENELEKRN------ 830

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                                 L   M           L VHDE++ E PD     +  L
Sbjct: 831 ----------------------LKSRML----------LQVHDELIFEVPDEEMTLMKEL 858

Query: 648 C-SLMTKNPSWAKGLPLKA 665
              +M         +PLK 
Sbjct: 859 VPKVMDSAVK--LDVPLKV 875


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +         ++A       ++ +                        
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193
                               A +      +        L ++L     + ER L  +   
Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG R+D+ L+  L   + +E ++L+ ++ +L      +      L   LF   G+  
Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502

Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +  T +  L          +LIL     S      L+ L   V    GRL  
Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                 A+ TGR S      QN+P                                +R  
Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G  L+ AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  +
Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y   A           L +            F+ + +  +      +
Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G          R     +    + + E    +                
Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +      L                           
Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 +         +VL        E P+        L   +M         +PL+ E
Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENTYP--LDVPLEVE 820

Query: 667 GYEAKRY 673
               + +
Sbjct: 821 VGVGRDW 827


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/678 (16%), Positives = 200/678 (29%), Gaps = 139/678 (20%)

Query: 16  LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNS 73
           L  VG +  Y   A     A A  D      D T  +      L ++L D       H +
Sbjct: 339 LAVVGTYTPYDGDAT--AVAIASADGDGAYIDTTTVTPDDEAALAEWLADAARPKALHEA 396

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKA 130
                      G ++       T++ A          +L +  L     E   + +    
Sbjct: 397 KQAIHALAG-RGWEL-GGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDD---G 451

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                      +      +A  ++A  +       DVE  R     L  L+D E  +  +
Sbjct: 452 EQQLSLLDEDGAGDAKAAQAQMLRARAVIDLADALDVELERIESAGL--LTDMELPVQRV 509

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G  +D D +  LQ   A   ++  +    +  G   +      L++ LF   G
Sbjct: 510 LAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVI-GKQINLGSPKQLQVVLFDELG 568

Query: 251 IDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
           +                L+++   +    L    +L     +   +  ++ L ++V++DG
Sbjct: 569 MPKTKKTKTGYTTDADALQTLFDKTGHPFLEH--LLTHRDVTRLKVT-VDGLLKSVAADG 625

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R+  T     A  TGR S      QN+P                            A   
Sbjct: 626 RIHTTFNQTIA-ATGRLSSTEPNLQNIP------------------------VRTEAGRE 660

Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G + L+  D + IE R++A ++ ++  I+AF  GED++    A+AF  PID
Sbjct: 661 IRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFGVPID 720

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+ E R   K M              +     GL                         
Sbjct: 721 EVTAELRRRVKAM--------------SYGLAYGLS------------------------ 742

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                     A + K+     +     + ++  GV    + + +           +    
Sbjct: 743 ------AYGLATQLKISNDEAKEQMDQYFSRFGGVRDYLRAVVDQARKDGYTSTVL---- 792

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                  RR    D+              +R            +
Sbjct: 793 ----------------------GRRRYLPDLDSGDR---------LRREAAERAALNAPI 821

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
           Q  + DI+   M    K          ++L VHDE++ E  +    S+  L    M    
Sbjct: 822 QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSAY 881

Query: 656 SWAKGLPLKAEGYEAKRY 673
                +PL+      + +
Sbjct: 882 P--LDVPLEVSVGYGRSW 897


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +         ++A       ++ +                        
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193
                               A +      +        L ++L     + ER L  +   
Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG R+D+ L+  L   + +E ++L+ ++ +L      +      L   LF   G+  
Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502

Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +  T +  L          +LIL     S      L+ L   V    GRL  
Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                 A+ TGR S      QN+P                                +R  
Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G  L+ AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  +
Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y   A           L +            F+ + +  +      +
Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G          R     +    + + E    +                
Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +      L                           
Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 +         +VL        E P+        L   +M         +PL+ E
Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820

Query: 667 GYEAKRY 673
               + +
Sbjct: 821 VGVGRDW 827


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/779 (14%), Positives = 205/779 (26%), Gaps = 200/779 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-------- 54
           ++ +D ET    P        Y     +   A A        +    Q  +         
Sbjct: 24  RVALDTETYGSDPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLP 78

Query: 55  -SDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110
              + Q  L       V HN+ ++R +   TL I +       T V            LK
Sbjct: 79  REAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLK 138

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------------- 153
                L   E +    E   L       ++        +  H                  
Sbjct: 139 EWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVH 198

Query: 154 --------------QAWQLFGE------------------------YCKRDVEATRELFK 175
                         +A+Q                            Y   D   T  L++
Sbjct: 199 NGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWE 258

Query: 176 R------LIPLS-----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER------- 217
                  L P       + E  +  +      RG  +D + + +++E I           
Sbjct: 259 HVEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEA 318

Query: 218 KKLDEDIVKLTDGIIRSS-RQTYALRMYLFLITGIDL--------VDMSEGTLKSIL--- 265
           ++L + ++        +       L   L+ + G  +           S+  +  +L   
Sbjct: 319 QELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLS 378

Query: 266 -SHSNITQLAKDLILNRLA---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                   LAK  +  + A            +++ E V   GRL       G + +GR S
Sbjct: 379 PKDKRKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMS 437

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QNLPR    E      +Q                  +R   +A  G   V AD 
Sbjct: 438 SSNPNLQNLPRLLPEEVAEKPYLQ---------------GIDIRKAFVADPGYIFVSADY 482

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA-------KAFNTPIDKVSKEQRAIGKV 434
           A +E  V A ++G+         G D++  T            +    +  K+ R   KV
Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +  AL Y G                 +          FE +   ++    +  +  E   
Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            +             +  +         DL +    + ++   +                
Sbjct: 598 VE--------YPIYGYIKR--------MDLPQALRKLPKDKWPLVLN------------- 628

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                   P +R+  Y+ ++                          ++Q  S  ++ + +
Sbjct: 629 ------NDPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666
               +          +++ VHDEIV    +     V  +    M +      G+ LKAE
Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/652 (15%), Positives = 183/652 (28%), Gaps = 133/652 (20%)

Query: 39  DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D      D         + L ++L D       H +        +  G  +       T+
Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLNGVT-SDTA 416

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + A          +L +  L     E   +  E      +      D       +   ++
Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE----QQQLSLLDDDDTDVAAAQTAILR 472

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           A  +       D E  R     L+   D E  +  +   +   G  +DL ++  LQ   A
Sbjct: 473 ARAVIDLADALDAELDRIDSTGLLA--DMELPVQHVLAEMETAGIAVDLTMLGGLQSHFA 530

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNIT 271
            + +    +      G   +      L++ LF   G+     ++    T    L      
Sbjct: 531 DQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDK 589

Query: 272 --QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   +L     +   +  ++ L  +V+ DGR+  T     A  TGR S      QN
Sbjct: 590 TGHPFLQHLLAHRDVTRLKVT-VDGLLNSVADDGRIHTTFNQTIA-ATGRLSSTEPNLQN 647

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARV 388
           +P                            A   +R   +  +G  +L+ AD + IE R+
Sbjct: 648 IP------------------------IRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRI 683

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++ ++  I+AF  GED++    ++AF  PID+V+ E R   K M             
Sbjct: 684 MAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG---------- 733

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  GL                                   + + K+     ++   
Sbjct: 734 ----LAYGLS------------------------------AYGLSSQLKISTEDAKVQMD 759

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + ++  GV      + E           +                           RR 
Sbjct: 760 QYFSRFGGVRDYLMAVVEQARKDGYTSTVL--------------------------GRRR 793

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
              ++               R            +Q  + DI+   M    K         
Sbjct: 794 YLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIEVDKALKEHALKS 844

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E        +  L    M         +PL+      + +
Sbjct: 845 RMLLQVHDELLFEVAAGEREQIEALVRDKMGSAYP--LDVPLEVSVGFGRSW 894


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/676 (16%), Positives = 186/676 (27%), Gaps = 151/676 (22%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFK 81
                  ++  A+A  D      D T+        L  +L D     + H++    +   
Sbjct: 351 WGRGTGDVSGLAFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALA 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKG 138
              G  +       T++ A           L+                 G+ L      G
Sbjct: 411 -ARGFTLAGVA-ADTALEAYLAQSGRRSFDLEPLAE----------EVLGRRLSPA---G 455

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQ 192
           + ++        +     Q+   +   D      L  +L         +D E  L  +  
Sbjct: 456 ADENQGTLFADEDAEAERQMAAAHAVLD--LADALRGKLAETGAEQLLTDIELPLVGVLA 513

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  ID  L   L++  + E  K  +           +      L+  LF   G+ 
Sbjct: 514 EMEQVGIAIDERLFQDLEKGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMP 573

Query: 253 LVD-------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                         +L  + + +    L  D +L     +    + +  LS++VS D R+
Sbjct: 574 KTKKIKTGYTTDADSLAWLQAQTQHPFL--DHLLRWREVNRLKTV-VEGLSKSVSPDTRI 630

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T     A  TGR S      QN+P                           L    +R
Sbjct: 631 HTTYNQMIA-ATGRLSSVDPNLQNIP------------------------IRTLEGQQIR 665

Query: 366 SCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IA  G + L+ AD + IE R++A ++ +   I+AF +GED++ T  AK F+     V
Sbjct: 666 KAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAV 725

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
             E R   K M   L                GL     SQ +   +              
Sbjct: 726 EPEHRRRIKAMSYGL--------------AYGLSAFGLSQQLGIETG------------- 758

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                                + + +  +  GV     DL                    
Sbjct: 759 -----------------EAAKMMEDYFQRFGGVRDYLHDLVVQARATGYTETMF------ 795

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                RR    D+  D         ++              +Q 
Sbjct: 796 --------------------GRRRYLPDLASDNRQRREMAERM---------ALNAPIQG 826

Query: 605 ISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657
            + DI+   M    +          ++L VHDE+V E        V  L    M      
Sbjct: 827 SAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMGSAAE- 885

Query: 658 AKGLPLKAEGYEAKRY 673
              +PL      A+ +
Sbjct: 886 -LRVPLDVSVGMAENW 900


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/714 (17%), Positives = 209/714 (29%), Gaps = 171/714 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIET    P              I+L   A  + PV L +          L +++    
Sbjct: 71  LDIETTGLDPHTS----------EISLIQIAAPNRPVILIEF-RGITNKETLRRFIEHPK 119

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL--ALNFSEH 121
           +  V HN  FE     K LGI+     WI T ++++    GLP +L+       L   + 
Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDL 179

Query: 122 LTKMEEGKALIARF----------CKGSIDSPPYDCTRANHVQAW-----QLFGEYCKRD 166
              ++  K L               +       Y   ++  V  W     Q   +Y   D
Sbjct: 180 TRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239

Query: 167 VEATRELFKRLI---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                 L + L               E         +   G  +DLD   +L + I   R
Sbjct: 240 AAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299

Query: 218 KKLDEDIVK-----------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           +   +   +                  +      +   L    GI     S+ TL  +  
Sbjct: 300 EDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDTLDKLSE 358

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
           +          I+     S +       L   V+    R+   +    A  +GR+S    
Sbjct: 359 NHPEVF----TIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRA-ASGRFSFSNP 413

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             Q +PR+                               RSC + + G KL++AD + IE
Sbjct: 414 NLQQIPRE----------------------------RQYRSCFVPAPGYKLIIADYSQIE 445

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+ A IA +   I A+ N +D++  T A      ID+V+K++R +GK +   L Y  GA
Sbjct: 446 LRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGA 505

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
              +  A                                      E      +     + 
Sbjct: 506 TKLRIYA--------------------------------------ETNYGVSMTFDEAQR 527

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
            +  +   + G+ Q  +D         +   +                  +   I   S 
Sbjct: 528 FRDNFFKGYPGLHQWHQD------TACKLRTT------------------KVKDIRTLSG 563

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNG 621
           R   + D     S                  L    VQ  S DI    +        + G
Sbjct: 564 RLRRWKDEPPLTS------------------LLNTPVQGTSADITKLALHKLNSDLDEIG 605

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS-WAKGLPLKAEGYEAKRY 673
              ++ VHDEIV E P+         L   M      + K +P+  E   A  +
Sbjct: 606 GFPIVVVHDEIVLEVPEDHVAEGSAMLEEAMVSAGKRFLKSVPVVVEAAIADSW 659


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/657 (15%), Positives = 182/657 (27%), Gaps = 137/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A       L D  + SA     L  +L  E    + H +     +     G ++   
Sbjct: 365 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLAG-RGFELHGV 422

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T++ A                            + L  +               A+
Sbjct: 423 -VHDTAIAAYLLRPGQRTYELADVYQ-----------RHLQRQLSTNDNGGQLTLLDAAD 470

Query: 152 HVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                       +   E T++L   +      D E  L  +   +   G  +D+  + + 
Sbjct: 471 DQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQ 530

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSI 264
            +    +  + +E   +L +    +      L++ LF   G+     ++        +  
Sbjct: 531 LKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIE 590

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                      D +L            L  L   V+ DGR+  T     AS TGR S   
Sbjct: 591 ALAIKNPHPFLDHLLAHRQYQKMKTT-LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTD 648

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                            A   +RS  +   G   L+ AD + 
Sbjct: 649 PNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADYSQ 684

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RV+A ++ +   I+A+  GED++    +K FN PID V+ E R   K M        
Sbjct: 685 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYG----- 739

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL     SQ +   +                                 
Sbjct: 740 ---------LVYGLSAFGLSQQLSIPAG------------------------------EA 760

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + + +++  +  GV +  +++ E                                     
Sbjct: 761 KQIMESYFERFGGVQRYLREIVEEARKAGYTETLF------------------------- 795

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RR    ++  D      A     R            +Q  + DI+   M    ++   
Sbjct: 796 -GRRRYLPELTSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDRSLKE 845

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E        V  +    M         +PL+    +   +
Sbjct: 846 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 900


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A     +     + + + D      +  +  L + L D+ +     +     +  ++ LG
Sbjct: 344 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 398

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141
           I + +       + +      ++  +          F     ++  GK            
Sbjct: 399 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 456

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++
Sbjct: 457 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 509

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
               ++K++  +      L   I +L      +      L + LF    +     ++   
Sbjct: 510 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 568

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    S      +N L + + +DG++         + TG
Sbjct: 569 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 627

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       L 
Sbjct: 628 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 663

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
             D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K + 
Sbjct: 664 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 723

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     ++N                               
Sbjct: 724 F--------------GIVYGISDYGLAKN------------------------------L 739

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  +    K   +           +                  
Sbjct: 740 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 782

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR +  D+      + +      R          + +Q  + DI+   M  
Sbjct: 783 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 824

Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                   K    ++L +HDE++ + P      + TL   +M +       +PL A+   
Sbjct: 825 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANW 882

Query: 670 AKRY 673
              +
Sbjct: 883 GHNW 886


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A     +     + + + D      +  +  L + L D+ +     +     +  ++ LG
Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141
           I + +       + +      ++  +          F     ++  GK            
Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++
Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
               ++K++  +      L   I +L      +      L + LF    +     ++   
Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    S      +N L + + +DG++         + TG
Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       L 
Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
             D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K + 
Sbjct: 657 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 716

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     ++N                               
Sbjct: 717 F--------------GIVYGISDYGLAKN------------------------------L 732

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  +    K   +           +                  
Sbjct: 733 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 775

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR +  D+      + +      R          + +Q  + DI+   M  
Sbjct: 776 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 817

Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                   K    ++L +HDE++ + P      + TL   +M +       +PL A+   
Sbjct: 818 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADANW 875

Query: 670 AKRY 673
              +
Sbjct: 876 GHNW 879


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/652 (12%), Positives = 184/652 (28%), Gaps = 121/652 (18%)

Query: 33  CAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
             +A  +  V  +   + S +   +L   + +E ++    N    +++  K LG+ +   
Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKA-QLVLFKRLGLALKGV 406

Query: 92  RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +    ++A      ++   L       +      +   GK    +F   +  +      
Sbjct: 407 NF-DFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGA--KFAVPTDTNLLLSHI 463

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                  ++L             +  ++    +D E  L  +   +  +G +++ + +  
Sbjct: 464 AHKADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRN 518

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
             + + +    + +  + +  G   +      L + LF   G+ ++  ++    T   +L
Sbjct: 519 KGKDLYERIADI-QSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVL 577

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                     D IL     +      ++ L   +   D ++         ++TGR S   
Sbjct: 578 EKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQT-LTQTGRLSSVD 636

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P                                +R+  +      ++  AD + 
Sbjct: 637 PNLQNIP------------------------MRSEEGRLIRTAFVPSHPNWQIFGADYSQ 672

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ 442
           IE RVLA + G+    KAF NGEDI+  T    F    D  V   +R   K +   + Y 
Sbjct: 673 IELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIVYG 732

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L + +        + F+++ Q       ++    E    + +    
Sbjct: 733 -----ISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHR- 786

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +     +L                                      
Sbjct: 787 --------RRYLPDIQAKNFNLRSFAERTAMN---------------------------- 810

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
                                  ++   +        N+ QA         +        
Sbjct: 811 ------------SPIQGSAADIIKIAMIKVNEALRKNNL-QA-------RMLLQVH---- 846

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                  DE++ ETP      +  +  ++M      A  +PLK + +    +
Sbjct: 847 -------DELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/663 (12%), Positives = 184/663 (27%), Gaps = 137/663 (20%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +     +  ++ LGI
Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLKRNYVGLQR-LGI 392

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDS 142
            + +       + +      ++  +          F     ++  GK             
Sbjct: 393 TLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDTL 450

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++ 
Sbjct: 451 YAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQ 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              ++K++  +      L   I +L      +      L + LF    +     ++    
Sbjct: 504 ATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFDKLKLTPAKKTKTGYS 562

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L            IL+    S      +N L + + +DG++         + TGR
Sbjct: 563 TSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGR 621

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +       L  
Sbjct: 622 LSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLFS 657

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437
            D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K +  
Sbjct: 658 CDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF 717

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     ++N                                
Sbjct: 718 --------------GIVYGISDYGLAKN------------------------------LG 733

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +  ++  +    K   +           +                   
Sbjct: 734 ISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH------------------ 775

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR +  D+      + +      R          + +Q  + DI+   M   
Sbjct: 776 --------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKM 818

Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  K    ++L +HDE++ + P      + TL   +M +       +PL A+    
Sbjct: 819 QSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANWG 876

Query: 671 KRY 673
             +
Sbjct: 877 HNW 879


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 179/662 (27%), Gaps = 154/662 (23%)

Query: 33  CAYAWDD-EPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            A+AW + E + +    D   +   P +                  ++     +    L 
Sbjct: 345 VAFAWGNAEKIYVSKNIDLLTKMKFPEN-----------------TYDFKKNRVLLSHLD 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P  ++                      L  +    K+     L       + +    
Sbjct: 388 IELPLVKF-DAM--------------LAKYLISTTEDNKISTIARLFNSGHLATDEEIFG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER---------DLWLLDQTIND 196
             T+        LF    ++         K +  L + E+          L  +   +  
Sbjct: 433 KGTKIALPDDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +  + + ++     ++   L  +I  L      +      L + LF    + +   
Sbjct: 493 TGIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKK 551

Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           ++    T   +L            IL     +      +  L   ++ DG++        
Sbjct: 552 TKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-D 610

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            ++TGR S      QN+P                                +R   + S  
Sbjct: 611 LTQTGRLSSVDPNLQNIP------------------------VRLEEGRKIRKAFVPSKD 646

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIG 432
             L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + F     + V+   R   
Sbjct: 647 SLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNA 706

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               L + +        + FE +   +++   +  +  + 
Sbjct: 707 KAVNFGVVYG-----ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDK 761

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
              + +            R K   +     ++                            
Sbjct: 762 GFVETMSHR---------RRKIPDINARNFNVRGFAERTAINSPI--------------- 797

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                                        +A   L        K         +RD    
Sbjct: 798 ---------------------------QGSAADILKIAMINLDKAL------SARD-FK- 822

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAK 671
                      ++L VHDEI+ + P      +  L    M +    A  +PLK +    K
Sbjct: 823 ---------SKLLLQVHDEIILDVPLEELDEIKALVKQTMEEAIELA--VPLKVDENTGK 871

Query: 672 RY 673
            +
Sbjct: 872 TW 873


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/623 (15%), Positives = 174/623 (27%), Gaps = 136/623 (21%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
           +L D       H+     +   +  G  +       T++ A           L +  L  
Sbjct: 375 WLADPDRAKAGHDLKGPMLALAEA-GFTLAGVT-SDTALAAYLALPGQRSFDLADLTLRY 432

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              E      E    +         S   D   A+ ++A          D +  R    R
Sbjct: 433 LHRELK-SDTETNGQLTLDG-----SGEADEAEADAIRARAALELAAALDGDLERRSAAR 486

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L+   + E  L  +   +   G   D + + +LQ+  + E   +         G   +  
Sbjct: 487 LLR--EMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAH-GLVGRSFNLG 543

Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAIL 290
               L+  LF    +           T    L+         L   L+ +R  +      
Sbjct: 544 SPKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLK--T 601

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +++L   +   GR+  T     A  TGR S      QN+P                   
Sbjct: 602 VVDSLIPMIDDAGRIHTTFNQMIA-ATGRLSSTDPNLQNIP------------------- 641

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G   L+ AD + IE R++A ++G+   I+AFA+GED++
Sbjct: 642 -----IRTPQGRQIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLH 696

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
               A+AF+ P+ +V  E R   K M              +     GL            
Sbjct: 697 TFVAAQAFDLPVSEVDPELRRRIKAM--------------SYGLAYGLS----------- 731

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A +  +          A+ A+  GV    + + +   
Sbjct: 732 -------------------AFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVDQAR 772

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+  D +       ++  
Sbjct: 773 RDGYTETIM--------------------------GRRRYLPDLTSDNTQRRQMAERM-- 804

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          ++L VHDE+V E        
Sbjct: 805 -------ALNAPIQGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVE 857

Query: 644 VGTLCS-LMTKNPSWAKGLPLKA 665
           V  L    M         +PL+ 
Sbjct: 858 VEALVRAEMGAAYE--MSVPLEV 878


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/606 (14%), Positives = 157/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 396 ----------GEWTEEAGERATLSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L  G   +      L   LF   G+   
Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHSFNLNSRDQLERVLFDELGLPAI 503

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 564 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 598

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEE 713

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821

Query: 668 YEAKRY 673
              + +
Sbjct: 822 GIGEDW 827


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 190/701 (27%), Gaps = 170/701 (24%)

Query: 6   IDIE--TRSPQP----------LPKVGVWAYAEQAVITLCAYAWDD-EPVKL---WDRTE 49
           ID E  T               L  +G   + EQ    + A+AW + E + +    D   
Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLP 106
           +   P +                  ++     +    L I++P  ++             
Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVKF-DAM--------- 398

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                    L  +    K+     L       + +      T+        LF    ++ 
Sbjct: 399 -----LAKYLISTTEDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKI 453

Query: 167 VEATRELFKRLIPLSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                   K +  L + E+          L  +   +   G  +  + + ++     ++ 
Sbjct: 454 KVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKL 513

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
             L  +I  L      +      L + LF    + +   ++    T   +L         
Sbjct: 514 ASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPV 572

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              IL     +      +  L   ++ DG++         ++TGR S      QN+P   
Sbjct: 573 VAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP--- 628

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   + S    L+ +D + IE RVLA I+G
Sbjct: 629 ---------------------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           ++  I AF +G DI+ +T  + F     + V+   R   K +   + Y            
Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYG-----ISDFGL 722

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +        + FE +   +++   +  +  +    + +            R K
Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHR---------RRK 773

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     ++                                                 
Sbjct: 774 IPDINARNFNVRGFAERTAINSPI------------------------------------ 797

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                   +A   L        K         +RD               ++L VHDEI+
Sbjct: 798 ------QGSAADILKIAMINLDKAL------SARD-FK----------SKLLLQVHDEII 834

Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            + P      +  L    M +    A  +PLK +    K +
Sbjct: 835 LDVPLEELDEIKALVKQTMEEAIELA--VPLKVDENTGKTW 873


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/629 (14%), Positives = 188/629 (29%), Gaps = 124/629 (19%)

Query: 56  DLLQYLRDETVMCVAHN--SLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           +L+++L ++      HN   +F+     +    L I++    +    + +       +++
Sbjct: 358 ELIEWLEND------HNNKIVFDAKKTYVAAHRLEINLQHIDF-DVMLASYIINPSRTIE 410

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +    +++          K+ IA + KG     P D     H+ A       CK  +   
Sbjct: 411 DVQSVVSYYNQNF----VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDI 466

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                ++  L++ E  L  +   + + G   D++ + ++Q  + ++   L  +I +   G
Sbjct: 467 LSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAA-G 525

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L + LF    + ++  ++    T   +L          D IL     S  
Sbjct: 526 ESFNINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKL 585

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L + +S D R+        A +TGR S      QN+P                
Sbjct: 586 QSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIP---------------- 628

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R      S+   ++ AD + IE RVLA +  ++   +AF +G+
Sbjct: 629 --------IRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGD 680

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T  K F    D+V+   R   K +   + Y               L + +     
Sbjct: 681 DIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYG-----ISDYGLSQNLGITRKKAKA 735

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                   +   + +   +          + L+           R     +     +L  
Sbjct: 736 FIDDYLASFPGVKQYMTDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNLRS 786

Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                 +      SA  +  +  +                                    
Sbjct: 787 FAERTAMNTPIQGSAADIIKLAMVQFD--------------------------------- 813

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           + +RE  Y  KL                +               DE++ E P +      
Sbjct: 814 KNVRETNYHAKL----------------LLQVH-----------DELIFEVPKSEVQDFS 846

Query: 646 T-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  +M    + A  +PL  +      +
Sbjct: 847 EFVEEIMDNALTLA--VPLLVDSSYGATW 873


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/629 (15%), Positives = 178/629 (28%), Gaps = 125/629 (19%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               Q++  ++     H +     +     G  +       T++            +   
Sbjct: 381 QAFAQWIASDS-PKYLHEAKAVFHMLAG-RGYTLNGIE-HDTAIAGYLLRPGQRTYDL-- 435

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATREL 173
                    K    + L  +   GS +S       A +  +         +     T +L
Sbjct: 436 ---------KDVYQRHLQRQLGGGSSESGQLSLLDAPDAQELVDSAVAILELSKSLTAQL 486

Query: 174 F--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E  L  +   +   G  +D+  + + +++  ++ K+ +    +L    
Sbjct: 487 QAIDAYELYREMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDE 546

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK--DLILNRLASSG 286
             +      L++ LF   G+     ++    T    +    +       D +L       
Sbjct: 547 TLNLSSPKQLQVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQK 606

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L+ L +AV  DGR+  T     AS TGR S      QN+P               
Sbjct: 607 MKTT-LDGLIKAVGDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP--------------- 649

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                        A   +RS  +   G K L+ AD + IE RV+A ++ +   I+A+  G
Sbjct: 650 ---------VRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTG 700

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           ED++    +K F+ P+D+V+ E R   K M   L Y               L++      
Sbjct: 701 EDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYG-----LSAFGLSQQLNIPAGEAK 755

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           V   S FE +   + +   + +Q  +      L G          R     +    +   
Sbjct: 756 VIMESYFERFGGVKRYLDQVVEQARKDGFTSTLFGR---------RRYLPELSSDNRVAR 806

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E                                        ++    V    +  N    
Sbjct: 807 ENAERAALNAPIQGTAADII---------------------KIAMLRVDARLTAEN---- 841

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                            Q                    ++L VHDE+V E        V 
Sbjct: 842 ----------------CQ------------------SRVLLQVHDELVLEVASGEQEKVQ 867

Query: 646 TLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            L    M    S    +PL+        +
Sbjct: 868 QLVEEEMDAAIS--LRVPLEVSAGVGTNW 894


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/661 (13%), Positives = 181/661 (27%), Gaps = 134/661 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83
                A   D E     D      +  +  L + L ++ V+    N  F+     +    
Sbjct: 339 EFCGFAIGTDKELWVSDDV----ELLREPALSEILANQKVVV---NV-FDGKRTYVGLHR 390

Query: 84  LGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
           LG+ + S  +    + +         + L       +  +      E     A+    + 
Sbjct: 391 LGVTLNSINY-DILLQSYLLDTNDNSNDLGQLAHEHDIEDIK-TDAEVYGTGAKRAVPAK 448

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           D           V          +       +L+ ++      E  L ++   +   G +
Sbjct: 449 DVLLEHLAHKIDVIGELGRRLQEELINNQQADLYWKI------ELPLSIVLAKMEISGIK 502

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D + +  +Q  + +   +L+  I +       +      L   LF      ++  ++  
Sbjct: 503 VDRERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTG 561

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T  ++L          D IL+    +      ++ L + + S  +   T      ++T
Sbjct: 562 YSTAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
           GR S      QN+P                                +R   +    G  +
Sbjct: 622 GRLSSTDPNLQNIP------------------------IRIEEGKKIRQAFVPSHEGWHI 657

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVM 435
           + +D + IE RVLA I G+    +AF   EDI+ +T  + F      +V+   R   K +
Sbjct: 658 LSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAV 717

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               + + +        + F+++   + +     +   E    
Sbjct: 718 NFGIVYG-----ISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYV 772

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           + +            R     +      +                               
Sbjct: 773 ETIAHR---------RRYLPDIHASNFSVRSFAER------------------------- 798

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                 + +NT             K+    +Q            
Sbjct: 799 ----------------------TAMNTPIQG---SAADIIKIAMINMQ-----------N 822

Query: 616 NATKN--GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
              K      ++L VHDE++ E PD     +  L   +M         +PLK E      
Sbjct: 823 ELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNN 880

Query: 673 Y 673
           +
Sbjct: 881 W 881


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A     +     + + + D      +  +  L + L D+ +     +     +  ++ LG
Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141
           I + +       + +      ++  +          F     ++  GK            
Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++
Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
               ++K++  +      L   I +L      +      L + LF    +     ++   
Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    S      +N L + + +DG++         + TG
Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       L 
Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
             D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K + 
Sbjct: 657 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 716

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     ++N                               
Sbjct: 717 F--------------GIVYGISDYGLAKN------------------------------L 732

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  +    K   +           +                  
Sbjct: 733 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 775

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR +  D+      + +      R          + +Q  + DI+   M  
Sbjct: 776 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 817

Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                   K    ++L +HDE++ + P      + TL   +M +       +PL A+   
Sbjct: 818 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANW 875

Query: 670 AKRY 673
              +
Sbjct: 876 GHNW 879


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A     +     + + + D      +  +  L + L D+ +     +     +  ++ LG
Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141
           I + +       + +      ++  +          F     ++  GK            
Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++
Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
               ++K++  +      L   I +L      +      L + LF    +     ++   
Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    S      +N L + + +DG++         + TG
Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       L 
Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
             D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K + 
Sbjct: 657 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 716

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+     ++N                               
Sbjct: 717 F--------------GIVYGISDYGLAKN------------------------------L 732

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++  +    K   +           +                  
Sbjct: 733 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 775

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR +  D+      + +      R          + +Q  + DI+   M  
Sbjct: 776 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 817

Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
                   K    ++L +HDE++ + P      + TL   +M +       +PL A+   
Sbjct: 818 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANW 875

Query: 670 AKRY 673
              +
Sbjct: 876 GHNW 879


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 164/662 (24%), Gaps = 136/662 (20%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82
                  +   A A               A       +L D       H +     + + 
Sbjct: 338 WALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAK---QVMRA 394

Query: 83  TL--GIDIPSKRWICTSVLARTNGLPS---SLKNACL-ALNFSEHLTKMEEGKALIARFC 136
               G          T++ A          +L       L  S      +     ++   
Sbjct: 395 FAERGWSFAGVT-ADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATAQAETGQLSFDA 453

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                +               L G +  R  E        +    D E  +  L   +  
Sbjct: 454 DEPDPTAGAQALMTRARAVHDLAGLFDTRLAEV-----GAVELFHDMELPIAELLARMER 508

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD- 255
            G   D + +  L+   A E ++  E+          +      L+  LF   G+     
Sbjct: 509 HGIAADREWLRGLEAQFAAEIQRCVEEAHAAAGREF-NLGSPKQLQEILFGDLGLPKTKK 567

Query: 256 --MSEGTLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                 T    L+            ++L     +      +  L + VS  GR+  T   
Sbjct: 568 IKTGYTTDADALTWLATQTTNELPVILLRHRDQAKLRTT-VEGLLKTVSPQGRIHTTFNQ 626

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P                                +R   +  
Sbjct: 627 MVA-ATGRLSSQDPNLQNIP------------------------VRTEEGRAIRRAFVVG 661

Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G   L+ AD + IE R++A ++ ++  I+AF +GED++ T  ++ F      V  E R 
Sbjct: 662 EGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVFAVAPADVDAEMRR 721

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K M              +     GL                                 
Sbjct: 722 KIKAM--------------SYGLAYGLS------------------------------AY 737

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             + +  +     + +   +  +  GV     ++ E    V      +            
Sbjct: 738 GLSQQLGIKPAEAQGLMDTYFERFGGVRDYLHNVVEEARAVGYTETLL------------ 785

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR    D+  D         ++              +Q  + DI+
Sbjct: 786 --------------GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADIV 822

Query: 611 CEGMKNATKNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
              M    +          ++L VHDEIV E        V  L    M          PL
Sbjct: 823 KIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGAYPLRA--PL 880

Query: 664 KA 665
             
Sbjct: 881 DV 882


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/628 (15%), Positives = 172/628 (27%), Gaps = 133/628 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGL---PSSLK 110
             L  +L D +   V H+S     +      G  I       T + A           L 
Sbjct: 375 DALAGWLADVSRPKVLHDSK--PAVLAFAARGCAIQGIA-RDTQIAAYLARPDQRSYDLT 431

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +  L     E           +     G+      +  +   ++A          D E +
Sbjct: 432 DLALRYLHRELRV-DLPETGQLTLDGLGND----GEAEQNLMLRARATLDLADAIDAELS 486

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           R+  +    +++ E  L  +   +   G   D   + +L+   A E K   +   +    
Sbjct: 487 RDGEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVGR 546

Query: 231 IIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDL--ILNRLASS 285
              +      L+  LF   G+           T    L           L  +L     +
Sbjct: 547 EF-NLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLRHRDVA 605

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 ++ L ++VS DGR+  T     A  TGR S      QN+P              
Sbjct: 606 KLKTT-VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP-------------- 649

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +   G   L+ AD + IE R++A ++ ++  I AF +
Sbjct: 650 ----------IRTEEGRRIRRAFVVGTGYECLLTADYSQIEMRIMAHLSADEALIDAFNS 699

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D +  T +  F  P++ V+ +QR   K M                    GL       
Sbjct: 700 GLDFHAATASSVFQVPVEAVTADQRRKIKAMNY--------------GLAYGLS------ 739

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       + +  +       + + + A   GV    +++
Sbjct: 740 ------------------------AFGLSQQLGVTAEEARGLMETYFAGFGGVRDYLQEV 775

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                        +                           RR    D+  D        
Sbjct: 776 VARARRDGYTESVL--------------------------GRRRYLPDLVSDNRQRREMA 809

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
            ++              +Q  + DI+   M N             ++L VHDE+V E   
Sbjct: 810 ERM---------ALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAP 860

Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
               ++  L    M         +PL+ 
Sbjct: 861 GEREALEALVRREMGGAFP--LSVPLEV 886


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/654 (12%), Positives = 175/654 (26%), Gaps = 127/654 (19%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89
            +A   +      R  +  M   +   L   T+   V     F+     +    LGI + 
Sbjct: 343 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQLG 397

Query: 90  SKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145
              +    +++         + L +      +++  +     GK +     +       +
Sbjct: 398 KVDF-DLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 456

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              +        +     +   E       +L    D E+ +  +   +   G  +D   
Sbjct: 457 LARK-----LAAIASLKPQLLKELAANEQDQLYD--DIEKPMANVLAQMEIAGITVDSSR 509

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  +     +   ++++ I +       +      L   LF    + ++  ++    T  
Sbjct: 510 LKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQLGHILFEEMKLPVIKKTKTGYSTAV 568

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL     S      +  L +A+ S  +   T      ++TGR S 
Sbjct: 569 DVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSS 628

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G ++  +D 
Sbjct: 629 VDPNLQNIP------------------------VRLEEGRKIRQAFVPSHEGWQIFSSDY 664

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440
           + IE RVLA I  ++    AF  G+DI+  T  + F+    ++V+   R   K +   + 
Sbjct: 665 SQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIV 724

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               + + +        + F+++   + +   +     +    + +  
Sbjct: 725 YG-----ISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISH 779

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                     R     +     +                +                    
Sbjct: 780 R---------RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADII--------------- 815

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                 ++    ++                                   L   M      
Sbjct: 816 ------KIAMIKMQDKLQAAG----------------------------LKATML----- 836

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                L VHDE++ E P      +  L  S+M      A  +PLK E +    +
Sbjct: 837 -----LQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHYGDTW 883


>gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 886

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/652 (12%), Positives = 174/652 (26%), Gaps = 119/652 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +   D    L  R       + L + L D  V     N+  + +   + LG+D+   
Sbjct: 339 LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGV 397

Query: 92  RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +    + +       +  +                +   GK               +  
Sbjct: 398 NF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 456

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +A  ++  +    Y +        L++      D ER L  +   +   G  +D   + 
Sbjct: 457 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 509

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++   + +   +L++ I +       +      L + LF    + ++  ++    T   +
Sbjct: 510 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 568

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L            IL     S      +  L + +  D +   T      + TGR S   
Sbjct: 569 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 628

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R     S  G K+  +D + 
Sbjct: 629 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 664

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442
           +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R   K +   + Y 
Sbjct: 665 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 724

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         + + +   +    S F+++   E +   + +   +    + L    
Sbjct: 725 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 778

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +             +                            I +
Sbjct: 779 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 815

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              R       +G  + +                                 +        
Sbjct: 816 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 839

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   E+V E P+    ++  L  S+M         +PLK E      +
Sbjct: 840 --------ELVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/629 (14%), Positives = 188/629 (29%), Gaps = 124/629 (19%)

Query: 56  DLLQYLRDETVMCVAHN--SLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           +L+++L ++      HN   +F+     +    L I++    +    + +       +++
Sbjct: 358 ELIEWLEND------HNNKIVFDAKKTYVAAHRLEINLQHIDF-DVMLASYIIDPSRTIE 410

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +    +++          K+ IA + KG     P D     H+ A       CK  +   
Sbjct: 411 DVQSVVSYYNQNF----VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDI 466

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                ++  L++ E  L  +   + + G   D++ + ++Q  + ++   L  +I +   G
Sbjct: 467 LSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAA-G 525

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L + LF    + ++  ++    T   +L          D IL     S  
Sbjct: 526 ESFNINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKL 585

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L + +S D R+        A +TGR S      QN+P                
Sbjct: 586 QSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIP---------------- 628

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R      S+   ++ AD + IE RVLA +  ++   +AF +G+
Sbjct: 629 --------IRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGD 680

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T  K F    D+V+   R   K +   + Y               L + +     
Sbjct: 681 DIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYG-----ISDYGLSQNLGITRKKAKA 735

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                   +   + +   +          + L+           R     +     +L  
Sbjct: 736 FIDDYLASFPGVKQYMTDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNLRS 786

Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                 +      SA  +  +  +                                    
Sbjct: 787 FAERTAMNTPIQGSAADIIKLAMVQFD--------------------------------- 813

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           + +RE  Y  KL                +               DE++ E P +      
Sbjct: 814 KNVRETNYHAKL----------------LLQVH-----------DELIFEVPKSEVQDFS 846

Query: 646 T-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  +M    + A  +PL  +      +
Sbjct: 847 EFVEEIMDNALTLA--VPLLVDSSYGATW 873


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/515 (16%), Positives = 148/515 (28%), Gaps = 118/515 (22%)

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                + L  + D E  L  +   +  RG  IDL+   +  + + +E   L  +I  L  
Sbjct: 434 ELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLAG 493

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASS 285
               + R +  +   LF    +     +      T   +L            IL      
Sbjct: 494 QEF-NLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLE 552

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 L  L + V    RL        A+ TGR S      QN+P              
Sbjct: 553 KLRSTYLEPLPQKVDDTSRLHTHFNQL-ATATGRLSSSGPNLQNIP-------------- 597

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                       G     +R C +A  G +LV AD + IE RVLA ++ +   ++AF  G
Sbjct: 598 ----------IRGEFGPRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQG 647

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+  T A   +   + V  E R   K +                    G+        
Sbjct: 648 EDIHSRTAAVIMDIADEHVDSEARRQAKTIN--------------FGLLYGMGP------ 687

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                    + + +  +     +   + +  + QGV   ++ + 
Sbjct: 688 ------------------------QKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIE 723

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +                                     + RR +  D+    + L     
Sbjct: 724 DAAKQHGYVTT--------------------------WAGRRRLLPDINSRNANLAQQAR 757

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKN------ATKNGYDIVLTVHDEIVSETPDT 639
           ++             +VQ  + DI+   M            G  + L VHDE++ E P  
Sbjct: 758 RM---------AVNTVVQGSAADIIKMAMIEADGDTELADAGARLTLQVHDELLLEVPRE 808

Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +    L ++M         +PL  +      +
Sbjct: 809 AAETAGKRLAAIMASVAD--MDVPLAVDWGVGTNW 841


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/654 (12%), Positives = 175/654 (26%), Gaps = 127/654 (19%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89
            +A   +      R  +  M   +   L   T+   V     F+     +    LGI + 
Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQLG 392

Query: 90  SKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145
              +    +++         + L +      +++  +     GK +     +       +
Sbjct: 393 KVDF-DLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              +        +     +   E       +L    D E+ +  +   +   G  +D   
Sbjct: 452 LARK-----LAAIASLKPQLLKELAANEQDQLYD--DIEKPMANVLAQMEIAGITVDSSR 504

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  +     +   ++++ I +       +      L   LF    + ++  ++    T  
Sbjct: 505 LKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQLGHILFEEMKLPVIKKTKTGYSTAV 563

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL     S      +  L +A+ S  +   T      ++TGR S 
Sbjct: 564 DVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSS 623

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G ++  +D 
Sbjct: 624 VDPNLQNIP------------------------VRLEEGRKIRQAFVPSHEGWQIFSSDY 659

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440
           + IE RVLA I  ++    AF  G+DI+  T  + F+    ++V+   R   K +   + 
Sbjct: 660 SQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIV 719

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               + + +        + F+++   + +   +     +    + +  
Sbjct: 720 YG-----ISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISH 774

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                     R     +     +                +                    
Sbjct: 775 R---------RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADII--------------- 810

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                 ++    ++                                   L   M      
Sbjct: 811 ------KIAMIKMQDKLQAAG----------------------------LKATML----- 831

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                L VHDE++ E P      +  L  S+M      A  +PLK E +    +
Sbjct: 832 -----LQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHYGDTW 878


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/652 (15%), Positives = 178/652 (27%), Gaps = 145/652 (22%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D    +L D + +      L  +L  +      H +     + +   GI +       T
Sbjct: 338 FDAIHAELADLSAEDD--KALAAWLESDA-EKFLHEAKAAYHMLQG-RGITLNGIA-HDT 392

Query: 97  SVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANH 152
           ++ A           L +              E+   L       S  +           
Sbjct: 393 ALAAYLLRPGQRTYELPDVYQRHLRKTLEASSEQLSLLDDTGGIDSAVAIMELTVELTKA 452

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           +Q    +  Y                   + E  L  +   +   G  +++D +   QE+
Sbjct: 453 LQEIDSYQLYA------------------ELEIPLVSILAKMEATGIAVNVDTLESQQEV 494

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269
            A      ++   +L      +      L+  LF    +     ++    T    +    
Sbjct: 495 FANHVAAEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLA 554

Query: 270 --ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   D +L            L  L + V  DGR+  T     AS TGR S      
Sbjct: 555 INHPHPFLDHLLAHREYQKLKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNL 612

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386
           QN+P                            +   +RS  I   G   L+ AD + IE 
Sbjct: 613 QNIP------------------------VRTESGRTIRSAFIVGEGYETLLTADYSQIEM 648

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RV+A ++ +   I+A+  GED++    ++ F+ P+DKV+ E R   K M   L       
Sbjct: 649 RVMAHLSQDPGLIEAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLV------ 702

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    GL     SQ +   +                                 +  
Sbjct: 703 --------YGLSAFGLSQQLSIPAG------------------------------EAKKT 724

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             A+  +  GV +   D+ E                                       R
Sbjct: 725 MDAYFDRFGGVKKYLADVVEQARKDGYTATVF--------------------------GR 758

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GY 622
           R    ++  D         +               +Q  + DI+   M    +       
Sbjct: 759 RRYLPELISDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDQALEGFKS 809

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE+V E        V  +    M  + S    +PL+        +
Sbjct: 810 RVLLQVHDELVVEVAPGELNKVQEIVEREMDASIS--LRVPLEVSAGTGDNW 859


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
                  +   A    D      D    T+       L  +L D      AH+       
Sbjct: 338 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 395

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP-SSLK--NACLALNFSEHLTKMEEGKALIARFC 136
             +  G  +       T++ A        S    +  +     E   +  E    ++   
Sbjct: 396 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 453

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                        +  V+A  +       D E  R        L++ E  L  +   +  
Sbjct: 454 DEEQTKAGAAA--SELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEA 509

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +D D +  L    A   K+  +D   +    I +      L++ LF   G+     
Sbjct: 510 AGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKR 568

Query: 257 SEG---TLKSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
           ++    T    L              +L    ++      ++ L ++++ DGR+  TL  
Sbjct: 569 TKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT-VDGLVKSIADDGRIHTTLNQ 627

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P                                +R   +  
Sbjct: 628 TIA-ATGRLSSTEPNLQNIP------------------------IRTEEGRRIREVFVVG 662

Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G  +L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PID+V  E R 
Sbjct: 663 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 722

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K M              +     GL                                 
Sbjct: 723 RVKAM--------------SYGLAYGLS------------------------------AF 738

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A + ++         +A+ A+   V    +D+ +           +            
Sbjct: 739 GLAQQLRISTEDAREQMEAYFARFGSVRDYLRDVVDQARKDGYTSTIL------------ 786

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR    D+  D         ++              +Q  + DI+
Sbjct: 787 --------------GRRRYLPDLNSDNRQRRDMAERM---------ALNAPIQGSAADII 823

Query: 611 CEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665
              M +  +        ++L VHDE++ E  D     V  L    M     +A  +PL+ 
Sbjct: 824 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 881

Query: 666 EGYEAKRY 673
                  +
Sbjct: 882 SVGVGGSW 889


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 190/701 (27%), Gaps = 170/701 (24%)

Query: 6   IDIE--TRSPQP----------LPKVGVWAYAEQAVITLCAYAWDD-EPVKL---WDRTE 49
           ID E  T               L  +G   + EQ    + A+AW + E + +    D   
Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLP 106
           +   P +                  ++     +    L I++P  ++             
Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVKF-DAM--------- 398

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                    L  +    K+     L       + +      T+        LF    ++ 
Sbjct: 399 -----LAKYLISTTEDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKI 453

Query: 167 VEATRELFKRLIPLSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                   K +  L + E+          L  +   +   G  +  + + ++     ++ 
Sbjct: 454 KVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKL 513

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274
             L  +I  L      +      L + LF    + +   ++    T   +L         
Sbjct: 514 ASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPV 572

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              IL     +      +  L   ++ DG++         ++TGR S      QN+P   
Sbjct: 573 VAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP--- 628

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   + S    L+ +D + IE RVLA I+G
Sbjct: 629 ---------------------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           ++  I AF +G DI+ +T  + F     + V+   R   K +   + Y            
Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYG-----ISDFGL 722

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +        + FE +   +++   +  +  +    + +            R K
Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHR---------RRK 773

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +     ++                                                 
Sbjct: 774 IPDINARNFNVRGFAERTAINSPI------------------------------------ 797

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                   +A   L        K         +RD               ++L VHDEI+
Sbjct: 798 ------QGSAADILKIAMINLDKAL------SARD-FK----------SKLLLQVHDEII 834

Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            + P      +  L    M +    A  +PLK +    K +
Sbjct: 835 LDVPLEELDEIKVLVKQTMEEAIELA--VPLKVDENTGKTW 873


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/661 (13%), Positives = 181/661 (27%), Gaps = 134/661 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83
                A   D E     D      +  +  L + L ++ V+    N  F+     +    
Sbjct: 339 EFCGFAIGTDKELWVSDDV----ELLREPALSEILANQKVVV---NV-FDGKRTYVGLHR 390

Query: 84  LGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
           LG+ + S  +    + +         + L       +  +      E     A+    + 
Sbjct: 391 LGVTLNSINY-DILLQSYLLDTNDNSNDLGQLAHEHDIEDIK-TDAEVYGTGAKRAVPAK 448

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           D           V          +       +L+ ++      E  L ++   +   G +
Sbjct: 449 DVLLEHLAHKIDVIGELGRRLQEELINNQQADLYWKI------ELPLSIVLAKMEISGIK 502

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           +D + +  +Q  + +   +L+  I +       +      L   LF      ++  ++  
Sbjct: 503 VDRERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTG 561

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T  ++L          D IL+    +      ++ L + + S  +   T      ++T
Sbjct: 562 YSTAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
           GR S      QN+P                                +R   +    G  +
Sbjct: 622 GRLSSTDPNLQNIP------------------------IRIEEGKKIRQAFVPSHEGWHI 657

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVM 435
           + +D + IE RVLA I G+    +AF   EDI+ +T  + F      +V+   R   K +
Sbjct: 658 LSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAV 717

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y               + + +        + F+++   + +     +   E    
Sbjct: 718 NFGIVYG-----ISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYV 772

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           + +            R     +      +                               
Sbjct: 773 ETIAHR---------RRYLPDIHASNFSVRSFAER------------------------- 798

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                 + +NT             K+    +Q            
Sbjct: 799 ----------------------TAMNTPIQG---SAADIIKIAMINMQ-----------N 822

Query: 616 NATKN--GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
              K      ++L VHDE++ E PD     +  L   +M         +PLK E      
Sbjct: 823 ELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNN 880

Query: 673 Y 673
           +
Sbjct: 881 W 881


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/606 (14%), Positives = 161/606 (26%), Gaps = 141/606 (23%)

Query: 82  KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
             L  ++        S+ A          +  +          L     GK  +    + 
Sbjct: 386 YHLWEELLEGEIHDLSLGAYLLNPLKDSYAYDDLARDY---MDLV--LPGKKELQNTAEE 440

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDR 197
                       +   +WQ      +   +    EL++      D E  L  +   +   
Sbjct: 441 G---------LYSAFVSWQAKNRIFQELKDTEQWELYR------DVEEPLVPVLYRMEKA 485

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D + +L   E + +    L E+I  +      +      L   LF    +     +
Sbjct: 486 GILVDKEALLSYGEELKKNIAMLQEEIYAMAGEEF-NINSPQQLGGILFEKMQLPGGKKT 544

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            IL     S         LS  V  D R+ G+ Q    
Sbjct: 545 KTGYSTAVDVLEKLQEDYPIVGKILEYRTYSKLNSTYAEGLSNYVGEDQRIHGSFQQMV- 603

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P                                 RS  I   G 
Sbjct: 604 TATGRLSSTEPNLQNIP------------------------IRTEMGRVFRSVFIPKEGS 639

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             + AD + +E R+LA ++ ++  I+A+    DI+  T ++ F+ P+++V+ E R   K 
Sbjct: 640 VFLDADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKA 699

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +                    G+                                   + 
Sbjct: 700 VNF--------------GIVYGIS------------------------------AFGLSE 715

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +     +   + +   +  V +                                   
Sbjct: 716 GLSISRQEAKEYIERYFTSYPKVKEYLDGEVAFARE------------------------ 751

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                +     RR    ++        + +    R            +Q  + DI+ + M
Sbjct: 752 --HSFVKTLFGRRRPLPEIHASNFMRRSFS---ERVAMNAP------IQGTAADIIKKAM 800

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
               +          IVL +HDE++ E       +V  +  S M    S    +PL  E 
Sbjct: 801 VIVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDILVSAMEHVVSLP--VPLIVEA 858

Query: 668 YEAKRY 673
                +
Sbjct: 859 TVGNNW 864


>gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 916

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/652 (12%), Positives = 174/652 (26%), Gaps = 119/652 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +   D    L  R       + L + L D  V     N+  + +   + LG+D+   
Sbjct: 369 LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGV 427

Query: 92  RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +    + +       +  +                +   GK               +  
Sbjct: 428 NF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 486

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +A  ++  +    Y +        L++      D ER L  +   +   G  +D   + 
Sbjct: 487 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 539

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++   + +   +L++ I +       +      L + LF    + ++  ++    T   +
Sbjct: 540 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 598

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L            IL     S      +  L + +  D +   T      + TGR S   
Sbjct: 599 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 658

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R     S  G K+  +D + 
Sbjct: 659 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 694

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442
           +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R   K +   + Y 
Sbjct: 695 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 754

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         + + +   +    S F+++   E +   + +   +    + L    
Sbjct: 755 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 808

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +             +                            I +
Sbjct: 809 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 845

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              R       +G  + +                                 +        
Sbjct: 846 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 869

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   E+V E P+    ++  L  S+M         +PLK E      +
Sbjct: 870 --------ELVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 911


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79
                  +   A    D      D    T+       L  +L D      AH+       
Sbjct: 339 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 396

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP-SSLK--NACLALNFSEHLTKMEEGKALIARFC 136
             +  G  +       T++ A        S    +  +     E   +  E    ++   
Sbjct: 397 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 454

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                        +  V+A  +       D E  R        L++ E  L  +   +  
Sbjct: 455 DEEQTKAGAAA--SELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEA 510

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +D D +  L    A   K+  +D   +    I +      L++ LF   G+     
Sbjct: 511 AGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKR 569

Query: 257 SEG---TLKSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
           ++    T    L              +L    ++      ++ L ++++ DGR+  TL  
Sbjct: 570 TKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT-VDGLVKSIADDGRIHTTLNQ 628

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P                                +R   +  
Sbjct: 629 TIA-ATGRLSSTEPNLQNIP------------------------IRTEEGRRIREVFVVG 663

Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G  +L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PID+V  E R 
Sbjct: 664 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 723

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K M              +     GL                                 
Sbjct: 724 RVKAM--------------SYGLAYGLS------------------------------AF 739

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A + ++         +A+ A+   V    +D+ +           +            
Sbjct: 740 GLAQQLRISTEDAREQMEAYFARFGSVRDYLRDVVDQARKDGYTSTIL------------ 787

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR    D+  D         ++              +Q  + DI+
Sbjct: 788 --------------GRRRYLPDLNSDNRQRRDMAERM---------ALNAPIQGSAADII 824

Query: 611 CEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665
              M +  +        ++L VHDE++ E  D     V  L    M     +A  +PL+ 
Sbjct: 825 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 882

Query: 666 EGYEAKRY 673
                  +
Sbjct: 883 SVGVGGSW 890


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/654 (12%), Positives = 175/654 (26%), Gaps = 127/654 (19%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89
            +A   +      R  +  M   +   L   T+   V     F+     +    LGI + 
Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQLG 392

Query: 90  SKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145
              +    +++         + L +      +++  +     GK +     +       +
Sbjct: 393 KVDF-DLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              +        +     +   E       +L    D E+ +  +   +   G  +D   
Sbjct: 452 LARK-----LAAIASLKPQLLKELAANEQDQLYD--DIEKPMANVLAQMEIAGITVDSSR 504

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
           +  +     +   ++++ I +       +      L   LF    + ++  ++    T  
Sbjct: 505 LKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQLGHILFEEMKLPVIKKTKTGYSTAV 563

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL     S      +  L +A+ S  +   T      ++TGR S 
Sbjct: 564 DVLEKLAPEAPIVANILQYRQISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGRLSS 623

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G ++  +D 
Sbjct: 624 VDPNLQNIP------------------------VRLEEGRKIRQAFVPSHEGWQIFSSDY 659

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440
           + IE RVLA I  ++    AF  G+DI+  T  + F+    ++V+   R   K +   + 
Sbjct: 660 SQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIV 719

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               + + +        + F+++   + +   +     +    + +  
Sbjct: 720 YG-----ISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISH 774

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                     R     +     +                +                    
Sbjct: 775 R---------RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADII--------------- 810

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                 ++    ++                                   L   M      
Sbjct: 811 ------KIAMIKMQDKLQAAG----------------------------LKATML----- 831

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                L VHDE++ E P      +  L  S+M      A  +PLK E +    +
Sbjct: 832 -----LQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHYGDTW 878


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/663 (12%), Positives = 183/663 (27%), Gaps = 137/663 (20%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +     +  ++ LGI
Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLKRNYVGLQR-LGI 392

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDS 142
            + +       + +      ++  +          F     ++  GK             
Sbjct: 393 TLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDTL 450

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++ 
Sbjct: 451 YAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQ 503

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
              ++K++  +      L   I +L      +      L + LF    +     ++    
Sbjct: 504 ATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYS 562

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L            IL+    S      +N L + + +DG++         + TGR
Sbjct: 563 TSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGR 621

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +       L  
Sbjct: 622 LSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLFS 657

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437
            D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K +  
Sbjct: 658 CDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF 717

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     ++N                                
Sbjct: 718 --------------GIVYGISDYGLAKN------------------------------LG 733

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     +  ++  +    K   +           +                   
Sbjct: 734 ISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH------------------ 775

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR +  D+      + +      R          + +Q  + DI+   M   
Sbjct: 776 --------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKM 818

Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  K    ++L +HDE++ + P      +  L   +M +       +PL A+    
Sbjct: 819 QSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLIADANWG 876

Query: 671 KRY 673
             +
Sbjct: 877 HNW 879


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/596 (14%), Positives = 165/596 (27%), Gaps = 139/596 (23%)

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
             R    S++A       +        N+             IA                
Sbjct: 412 VARIHDVSLMAYLLDPTRT--------NYGYLYLTERFSVPSIATGSVDVECVSMVKALL 463

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A    A +   +    D+             ++ E  L      +   G  ID   + + 
Sbjct: 464 AMDDAAVKALQDESLWDL------------YNNIELPLIHTLLVMEKNGIYIDPVKLEET 511

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
                 E + + ++I +L  G   +      L + LF    + ++  ++    T   +L 
Sbjct: 512 TIKFKAELEAVQQEIYELA-GETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLD 570

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
                    + IL   + +         L+  ++    R+  T      + TGR S    
Sbjct: 571 MLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMV-TATGRLSSSDP 629

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384
             QN+P                                +R+      G   LV AD + I
Sbjct: 630 NLQNIP------------------------VRTEKGREIRALFYPGEGFDTLVSADYSQI 665

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA ++G++  IKAF +G+DI+  T A+      D+V+ E+R+  K +   + Y   
Sbjct: 666 ELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYG-- 723

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L                                        +     +
Sbjct: 724 ---ISDFGLSRDL---------------------------------------GITRQEAK 741

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
              + + +++  V +   ++        +        R                      
Sbjct: 742 NYIELYFSRYPKVKEYMDNMVIEAHETGKVRTMFGRMRELPDINSRNFNR---------- 791

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TK 619
                      + + +NT                   +Q  + DI+   M         K
Sbjct: 792 -------RSFAERTAMNT------------------PIQGTAADIIKLAMNKVESILEEK 826

Query: 620 N-GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                ++L VHDE+V E  +    ++ T L   M         +PL  + + A+ +
Sbjct: 827 AFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/661 (14%), Positives = 191/661 (28%), Gaps = 141/661 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--KKTLGID 87
           I   A  +++      D         +   ++ DE++    ++           K  G++
Sbjct: 333 IVGFAI-YNNSEAYYIDIENAIKC-QNFQNFINDESIEKYGYDIK---KCINAAKWHGLE 387

Query: 88  IPSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLT-KMEEGKALIARFCKGSIDS 142
           I         + +       SLK+     C   ++ + L  +   GK         +   
Sbjct: 388 IK-NYVFDLQLASYILNP--SLKDEIRSVCEYYDYYDVLYDEEVYGKG--------AKKK 436

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P     A+H+          K       +   +     D E  +  +  ++  +G +ID
Sbjct: 437 IPETTAIADHLIKQAKAIYVLKDKAIEKLKQENQFDLYKDVEMPVAKILASMEYQGAKID 496

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
            D++  L+    +E + L+++I +L +    +      L   LF   G+     ++    
Sbjct: 497 KDVLKDLENQFGKEIEVLEKEIHQLAN-KNFNIASPKQLGEVLFEDLGLPNGKKTKTGYS 555

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   IL+         + +L     S      +  L E +  DG++         ++TGR
Sbjct: 556 TSVDILNKLKDVHPIINKVLQYRTLSKLYSTYIIGLQEQIFVDGKIHTIYNQA-LTQTGR 614

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P                                +R   I      LV  
Sbjct: 615 LSSTDPNLQNIP------------------------VKTAEGKLIRKAFIPEYDY-LVSF 649

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA +A     IKAF   +DI+  T ++ F    D+V    R   K +    
Sbjct: 650 DYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNF-- 707

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+     ++ V                               + 
Sbjct: 708 ------------GIIYGMSDFGLAEQV------------------------------GVP 725

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   K +   +  +     +  E           ++ +R                 
Sbjct: 726 VNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNRKR----------------- 768

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-- 617
                     +     + +Y+     + +           + +Q  + DI+   M     
Sbjct: 769 ----------FIREINEKNYMRQELGKRL--------AMNSPIQGSAADIIKVAMIKVDE 810

Query: 618 ----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ +        V  + +  MT        + LK+EG  A  
Sbjct: 811 LFKKHNLKSKMILQVHDELIFDVYKEELEEVMEVVAKGMTTAVK--MNVELKSEGSYAIN 868

Query: 673 Y 673
           +
Sbjct: 869 W 869


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/626 (15%), Positives = 170/626 (27%), Gaps = 136/626 (21%)

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHL 122
              V H++    +      G  +       T++ A           L +  +     E  
Sbjct: 398 RPKVLHDAKGPILALA-ARGWTLRGLA-SDTALAAYLVLPGQRSFDLADLAVRYLRRELR 455

Query: 123 TKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            +    G   ++    G   +       A  V            D E       RL+   
Sbjct: 456 AEAGSAGDGQLSFEMAGDEATAAAAGVHARAVLDLAEV-----LDAEVAARGGARLLR-- 508

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  +D+D ++ L   +A    K  E       G   +      L
Sbjct: 509 DVELPLIDVLAAMERAGIAVDVDTLVDLSAELAAHV-KATEQAAYQVVGREFNLGSPKQL 567

Query: 242 RMYLFLITGIDLVD---MSEGTLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTL 295
           +  LF    +           T    L +        L + L+ +R  S   A   +++L
Sbjct: 568 QQILFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLRHRDVSRLKAT--VDSL 625

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              V ++GR+  T     A  TGR S      QN+P                        
Sbjct: 626 IPMVDAEGRIHTTFNQMVA-ATGRLSSQDPNLQNIP------------------------ 660

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                   +R   +   G + L+ AD + IE R++A ++ +   I+AF +G D +  T A
Sbjct: 661 IRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRSGFDFHAATAA 720

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             F    ++V  E R   K M                    GL                 
Sbjct: 721 SVFGVRPEQVDAEMRRRVKAMNY--------------GLAYGLS---------------- 750

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                             + +  +      ++ + +  +  GV    + + E        
Sbjct: 751 --------------AYGLSQQLGITPDEARVLMEEYFRRFGGVRDYLRTVVERARRDGYT 796

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
              +                           RR    D+  D         ++       
Sbjct: 797 ETLL--------------------------GRRRYLPDLTSDNRQRREMAERM------- 823

Query: 595 GKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  +Q  + DI+   M    +          ++L VHDE+V E        V  + 
Sbjct: 824 --ALNAPIQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEIV 881

Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRY 673
              M         +PL+      + +
Sbjct: 882 RREMGHAYE--LSVPLEVSVGVGRTW 905


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/684 (14%), Positives = 176/684 (25%), Gaps = 150/684 (21%)

Query: 15  PLPKVGVWAYA-EQAVITLCAYAWDDEP-VKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
           PL    V  +A     ++  A A    P V                 ++ D     V H+
Sbjct: 349 PLGLATVDTWALGSGSVSQIALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHD 408

Query: 73  SL-----FERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSEHLT 123
           +      F+        G  +       T++ A          +L       L       
Sbjct: 409 AKRVMRVFDEQ------GWAVAGAAM-DTALAAYLVKPGRRSFALDALSVEYLGRELSPA 461

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              E    +A       +           +   + FG                   L D 
Sbjct: 462 AAAES-GQLAFGADEQAEQDALMIQARTILDLGEAFGRRLAEVGAVEL--------LRDV 512

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  +  L   +   G   D D + ++ +  A   ++  ++          +      L+ 
Sbjct: 513 ELPISALLARMEKAGIAADRDWLDRMDQRFAGAVQQAVKEAHDAVGHEF-NLGSPKQLQE 571

Query: 244 YLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSE 297
             F   G+           T    L+        +L   ++ +R  +   +   +  L +
Sbjct: 572 VFFGELGLPKTKKIKTGYTTDADALAWLATQTDHELPVIMLRHREQARLRST--VEGLIK 629

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           A++  GR+  T     A  TGR S      QN+                           
Sbjct: 630 AIAPGGRIHTTFNQTVA-ATGRLSSTDPNLQNV------------------------HVR 664

Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  ++ 
Sbjct: 665 TEEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQV 724

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F     +V  E R   K M              +     GL                   
Sbjct: 725 FGVAKSEVDPEMRRKIKAM--------------SYGLAYGLS------------------ 752

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           + +  +       +   +  +  GV    + + +          
Sbjct: 753 ------------AFGLSQQLGITPDEARKLMDTFFERFGGVRDYLQRVVDEARATGYTET 800

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +                           RR    D+  D         ++         
Sbjct: 801 ML--------------------------GRRRYLPDLNSDNRQRREMAERM--------- 825

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                +Q  + DI+   M    +          ++L VHDEIV E        V  L   
Sbjct: 826 ALNAPIQGTAADIVKIAMLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRR 885

Query: 651 -MTKNPSWAKGLPLKAEGYEAKRY 673
            M          PL         +
Sbjct: 886 EMAGAFHLRA--PLDVSVGAGTDW 907


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/657 (15%), Positives = 182/657 (27%), Gaps = 137/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A       L D  + SA     L  +L  E    + H +     +     G ++   
Sbjct: 340 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLAG-RGFELHGV 397

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T++ A                            + L  +               A+
Sbjct: 398 -VHDTAIAAYLLRPGQRTYELADVYQ-----------RHLQRQLSTNDNGGQLTLLDAAD 445

Query: 152 HVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                       +   E T++L   +      D E  L  +   +   G  +D+  + + 
Sbjct: 446 DQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQ 505

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSI 264
            +    +  + +E   +L +    +      L++ LF   G+     ++        +  
Sbjct: 506 LKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIE 565

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                      D +L            L  L   V+ DGR+  T     AS TGR S   
Sbjct: 566 ALAIKNPHPFLDHLLAHRQYQKMKTT-LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTD 623

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                            A   +RS  +   G   L+ AD + 
Sbjct: 624 PNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADYSQ 659

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RV+A ++ +   I+A+  GED++    +K FN PID V+ E R   K M        
Sbjct: 660 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYG----- 714

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL     SQ +   +                                 
Sbjct: 715 ---------LVYGLSAFGLSQQLSIPAG------------------------------EA 735

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + + +++  +  GV +  +++ E                                     
Sbjct: 736 KQIMESYFERFGGVQRYLREIVEEARKAGYTETLF------------------------- 770

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RR    ++  D      A     R            +Q  + DI+   M    ++   
Sbjct: 771 -GRRRYLPELTSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDRSLKE 820

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE+V E        V  +    M         +PL+    +   +
Sbjct: 821 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 875


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +         ++A      ++  +                        
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193
                               A +      +        L ++L     + ER L  +   
Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG R+D+ L+  L   + +E ++L+ ++ +L      +      L   LF   G+  
Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502

Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +  T +  L          +LIL     S      L+ L   V    GRL  
Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                 A+ TGR S      QN+P                                +R  
Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G  L+ AD + IE RVLA ++G++   + F  G+DI+  T A  F      V  +
Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y   A           L +            F+ + +  +      +
Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G          R     +    + + E    +                
Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +      L                           
Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 +         +VL        E P+        L   +M         +PL+ E
Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820

Query: 667 GYEAKRY 673
               + +
Sbjct: 821 VGVGRDW 827


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/631 (16%), Positives = 182/631 (28%), Gaps = 136/631 (21%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116
           +L D      AH+     +     LG+ +       T++ A           L +     
Sbjct: 368 WLADAHQPKAAHDVKGPMLALA-ELGLTLAGVT-SDTALAAYLALPGQRSFDLADLVARY 425

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              +   +   G   +         S   + + A+ V+A        + D +  R     
Sbjct: 426 LHRDLAVE-PAGNGQLTLDG-----SGEAEESHADAVRARACLELADELDADLERRSAAV 479

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L+   D E  L  +   +   G   D D + +LQ+    E   +     ++  G   +  
Sbjct: 480 LLR--DMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIV-GRTFNLG 536

Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAIL 290
               L+  LF   G+           T    L+         L   L+ +R  +      
Sbjct: 537 SPKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLK--T 594

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +++L   +   GR+  T     A  TGR S      QN+P                   
Sbjct: 595 VVDSLLPMIDDAGRIHTTFNQMIA-ATGRLSSTDPNLQNIP------------------- 634

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G   L+ AD + IE R++A ++G++  I+AF +GED++
Sbjct: 635 -----IRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLH 689

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
               A+AF  P+ +V  E R   K M              +     GL            
Sbjct: 690 TFVAAEAFGLPVSEVDPELRRRIKAM--------------SYGLAYGLS----------- 724

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A +  +          A+  +  GV    + + E   
Sbjct: 725 -------------------AFGLASQLGIAPDEAREHMDAYFGRFGGVRDFLRGVVERAR 765

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+  D +       ++  
Sbjct: 766 RDGYTETML--------------------------GRRRYLPDLTSDNAQRRQMAERM-- 797

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          ++L VHDE+V E     Y +
Sbjct: 798 -------ALNAPIQGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDA 850

Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           V  L    MT    +   +PL       + +
Sbjct: 851 VEALVRAEMTSA--YTMSVPLDVSVGAGRTW 879


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/521 (15%), Positives = 157/521 (30%), Gaps = 117/521 (22%)

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              +++   E  + L   ++ E  L  +  ++   G R D D + +  + + ++ + L  
Sbjct: 439 LAENLKLRLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTS 498

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLIL 279
            I  L  G   +      L   LF   G+     ++    T   +L           L+L
Sbjct: 499 QIYDLAGGEF-NIASPKQLGEVLFEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVGLVL 557

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                +      +++L + V +DGR+R   +    +RTGR S      QN+P        
Sbjct: 558 EYRTLTKLNSTYVDSLLKEVEADGRVRSVFKQTE-TRTGRISSTEPNMQNIP-------- 608

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A +G   + AD + IE RVLA + G++   
Sbjct: 609 ----------------VRKEIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMR 652

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           K FA+G DI+  T ++ F  P D V  E R+  K +   +                G+  
Sbjct: 653 KTFADGTDIHTMTASQVFGIPADAVLPEMRSAAKAVNFGII--------------YGIG- 697

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            +    +     +   K +      V +
Sbjct: 698 -----------------------------AFSLSKDIGVSVKEAKQYIKNYLDNFPKVSE 728

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                 +     ++ G   +                          RR    ++      
Sbjct: 729 FM---DKTVEDGIKNGYVTTI-----------------------FGRRRYIPELAATNKV 762

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
           +     +               +Q  + DI+   M    K          ++L VHDE++
Sbjct: 763 MQAFGKRA---------AMNAPIQGAAADIIKMAMVKVYKRLKAEKLDARLILQVHDELI 813

Query: 634 SETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E           +    M K  ++   +P++    E + +
Sbjct: 814 IEVTPDDKEKAKAILKEEMEKAVNFT--VPMEVSVGEGESW 852


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/606 (14%), Positives = 159/606 (26%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 77  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 117

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 118 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 166

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+  +
Sbjct: 167 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 225

Query: 255 DMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
             +E      T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 226 GKTENTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 285

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 286 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 320

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 321 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 380

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 381 RRTAKTINYGVLYGMSAHHLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 435

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 436 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 482

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 483 -----------------MKLAMVKLLPRLEEMG--------------------------- 498

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +         +VL        E P     +V  L   +M      A  +PL+ E 
Sbjct: 499 --ARMLLQVHDE---LVL--------EAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 543

Query: 668 YEAKRY 673
              + +
Sbjct: 544 GIGEDW 549


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 93/685 (13%), Positives = 189/685 (27%), Gaps = 143/685 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           ID  T S   + +     Y   + +      + +    ++   +       +++YL+ E 
Sbjct: 317 IDF-TDSALHV-ECYTEDY-HNSDVVGIVV-YREGDAYIFSEEQF-FTNEFVVEYLQSEF 371

Query: 66  VMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFS 119
           V  V     ++    +   K  G++I  +      +++    + +     K     L   
Sbjct: 372 VKTV-----YDFKKILFIAKRNGVNINGE-VFDVKIVSYLIDVNAKTEIDKIVFNYLGKI 425

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               +   GK                +   A   ++  L     +       E    L  
Sbjct: 426 IKSDEEIYGKGAKR----TLPSQDVINPYIAEVAESIALMKPLMEEK--LAEENMTDLYK 479

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D E  +  +   +   G  +    + ++     +  K L+  I  L      +     
Sbjct: 480 --DIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGSEF-NIASPK 536

Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF   G+  +  ++    T   +L     +     LI+     +         L 
Sbjct: 537 QLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLV 596

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + ++ +G++    +   A +TGR S      QN+P                         
Sbjct: 597 KDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIP------------------------T 631

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +  S  + ++  D + IE RVLA IA +   I AF +  DI+  T + 
Sbjct: 632 RIEEGKKIRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASD 691

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                +D+V+   R   K +   + Y               L                  
Sbjct: 692 VNGVSLDQVTSSMRREAKAVNFGIVYG-----ISDFGLSNNL------------------ 728

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                 +     +     +    +GV +   D+ E         
Sbjct: 729 ---------------------GITRKRAKEFIDKYLETFKGVDKYMTDIVEFAKEHGYVE 767

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
              +                          RR    D+              +       
Sbjct: 768 TLFN--------------------------RRRALPDINAKN---------KIVANLNAR 792

Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLC 648
               + +Q  + DI+   M N       TK    ++L VHDE++ +            + 
Sbjct: 793 IAMNSPIQGTAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTKEMI 852

Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
            +M +  +    + LKAE      +
Sbjct: 853 KIMEEAAN--LDVQLKAEASSGASW 875


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 119/415 (28%), Positives = 178/415 (42%), Gaps = 66/415 (15%)

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
             RL  S +++ K N + + + SD R+RG  QFYGA  TGRW+G   Q QNL +   S+ 
Sbjct: 1   EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDT 59

Query: 339 ILTQTIQALNRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            L      +               P  L S  VR+   A  G +L V+D + IEARV+AW
Sbjct: 60  ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW 119

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR--AIGKVMELALGYQGGAKVFK 449
            A E W++  F     IY  + ++ FN P++ ++K       GKV ELALGYQGGA   K
Sbjct: 120 YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK 179

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            M                                         A++  +     + +  +
Sbjct: 180 AMG----------------------------------------ALEMGIEENELQGLVDS 199

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  +  ++  WK   E          ++ +R+  +   L     K  + I LPS R L 
Sbjct: 200 WRNANPNIVNFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALA 253

Query: 570 YSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
           Y       +   +            +  + +TYGGKL ENIVQA +RD+L   +      
Sbjct: 254 YPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAL 313

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           G+ IV  VHDE++ E P      +  + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 314 GFKIVGHVHDEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 107/648 (16%), Positives = 183/648 (28%), Gaps = 148/648 (22%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN-----SLFERILFKKTLGIDIP 89
           YA  D  V L +         +LL+ L +  V     N     +           G    
Sbjct: 345 YAVQDTTVYLLEDA-------ELLRLLDNADVTLDVFNSAPLYAK------AMAAGGWGS 391

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           S  W    + A      +S                    K  I+        +  + CT 
Sbjct: 392 SIVW-DGKLAAYLLDASAS--------------------KYQISELIPAYKAAAAFTCTD 430

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                A +L   + +   E T      L    + E  L  +   +   G  +D D + + 
Sbjct: 431 Y--PDAGRLADLFARMKAEITACGEDALYN--EIEFPLAQVLADMTRTGVLVDKDGIEQF 486

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILS 266
              + +E +++   I   T     +      L   LF   G+     +     T    L 
Sbjct: 487 GVKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLE 546

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                 L +D++  R A        +  L + +  DGR+  T     A RTGR S     
Sbjct: 547 SLREYPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  +A  G  LV AD + IE 
Sbjct: 605 LQNIP------------------------IRTELGSQLRAYFVAKPGCVLVDADYSQIEL 640

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA I G++   +AF NGEDI+ +T AK +  P  +V+   R+  K +   + Y  G  
Sbjct: 641 RILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKG-- 698

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                +    + +     +    +    +     +                L G      
Sbjct: 699 ---AYSLSKDIGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGR----- 750

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               R     +     ++      + +                                 
Sbjct: 751 ----RRTLPELASTNFNVRASGERMARNTPIQGTAADVI--------------------- 785

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
           +L    V               R R    K+   ++                       L
Sbjct: 786 KLAMVRV-------------WKRLR--DEKMASRLI-----------------------L 807

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           TVHDE++ E P+        +    M     +A  +PL  + +  K +
Sbjct: 808 TVHDELIVEAPEVEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 108/667 (16%), Positives = 188/667 (28%), Gaps = 140/667 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGI 86
             +T  A A  D           +      L  +L D       H +      +      
Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADADQPKALHEAK-----WAMHA-- 414

Query: 87  DIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCK 137
            +  + W+       T++ A          +L +  L     E   +   G+  ++    
Sbjct: 415 -LRGRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEE-TGEEQLSLL-- 470

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              D+   D   A                ++   +  +    LS+ E  L  +   I   
Sbjct: 471 --DDADQVDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLADIEAS 528

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM- 256
           G  +D   +  LQ   A E     E       G   +      L++ LF    +      
Sbjct: 529 GIAVDGTHLHDLQSRFAAEVSAAAEAAY-GVIGKQINLGSPKQLQVVLFDELEMPKTKKT 587

Query: 257 ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                     L+++   ++   L    +L    ++   +  ++ L + V+ DGR+  T  
Sbjct: 588 KTGYTTDAEALQNLFEKTSHPFLEH--LLAHRDATRLKVT-VDGLLKTVAEDGRIHTTFN 644

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                            A   +R   + 
Sbjct: 645 QTVA-ATGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVV 679

Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G   L+ AD + IE R++A ++G++  I+AF  GED++    A+AF  PI++V+ E R
Sbjct: 680 GEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELR 739

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K M   L Y               L +       +  + F  +     +   + +Q 
Sbjct: 740 RRVKAMSYGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQA 794

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            +      L G          R     +    +   E                       
Sbjct: 795 RKDGYTSTLYGR---------RRYLPDLTSDNRQRREVAERA------------------ 827

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                                         LN              K+    VQ   RD 
Sbjct: 828 -----------------------------ALNAPIQG---TAADIIKVAMINVQRSLRD- 854

Query: 610 LCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666
                      G    ++L VHDE+V E  D+    V  L    M+        +PL   
Sbjct: 855 ----------AGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSAIE--LSVPLDVS 902

Query: 667 GYEAKRY 673
               + +
Sbjct: 903 VGTGRSW 909


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/549 (14%), Positives = 142/549 (25%), Gaps = 125/549 (22%)

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                +   GK  I      +     +    A   +   +         E    +     
Sbjct: 535 EPVREEQTAGKVSIRTALNPAEQCICHMAYTAWKSRERLMKKLEELDMKELFYTI----- 589

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E  L      +   G  +  + +    E +  + ++L+++I     G   +    
Sbjct: 590 -----EMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY-GETGEHFNINSP 643

Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             L   LF    +     ++    T   +L            IL+    +       + L
Sbjct: 644 KQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQLTKLKSTYADGL 703

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
           +  +  DGR+ GT      + TGR S      QN+P                        
Sbjct: 704 AGYIREDGRIHGTFNQT-ITATGRLSSTEPNLQNIP------------------------ 738

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                   +R   +   G   V AD + IE RVLA ++G++  I+A+   EDI+  T ++
Sbjct: 739 VRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAITASE 798

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F+ P+++V+  QR   K +                    G+                  
Sbjct: 799 VFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS----------------- 827

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                            +    +           +   +  V +    L E         
Sbjct: 828 -------------AFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVT 874

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                RR                        +       G+   +               
Sbjct: 875 TMFKRRRPVPELSS-----------------KNFMQRSFGERVAM--------------- 902

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
               + +Q  + DI+   M               IVL VHDE++ E        V T+  
Sbjct: 903 ---NSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIEAKKEELKRVQTILS 959

Query: 649 SLMTKNPSW 657
             M      
Sbjct: 960 EEMKHAADL 968


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/598 (12%), Positives = 158/598 (26%), Gaps = 137/598 (22%)

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           D+    +    + A                  +  +   +                    
Sbjct: 403 DVRHADYFDIGLAAYLLNS-------------NTDVFAYDALADTYLASSLPETKDDDAA 449

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                 V    +       D + + +++ ++      +  L      +   G ++D+D +
Sbjct: 450 AAVHVLVAPRLVNALREALDKDGSADVYYKI------DLPLVSTLTLMERVGAQLDVDAL 503

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKS 263
             +      E   L   I +L      +      L + LF   G+     +     T  +
Sbjct: 504 AAMGSATRGEIDSLRAHIHELAGEEF-NVDSPKQLGVILFDKLGLPHGKKTRTGYSTNAA 562

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            L          D +L     +  +   ++ L    + DGR+         + TGR S  
Sbjct: 563 TLKKLQSIHPIADEVLRYRELAKMSSTYIDALPRMRADDGRVHTHFNQTV-TTTGRLSSS 621

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R C +    G   V AD +
Sbjct: 622 DPNLQNIP------------------------VRTDFGRRIRECFVPLHEGDVFVSADYS 657

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA ++G++  + AF +G D +  T A+ F+ P+D+V+ + R+            
Sbjct: 658 QIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVDEVTPQLRSRA---------- 707

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                                             +A +  +    Q    A    +    
Sbjct: 708 ----------------------------------KAVNFGIVYGQQAFGLAQSLDIGFKE 733

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            + +   +   + GV        E              +R     +              
Sbjct: 734 AQDMIDRYFEAYPGVRSYLDKTVEDAKQTGYAVTMFGRKRHIPELK-------------- 779

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
               R       G+ + +                   + +Q  + DI+   M    +   
Sbjct: 780 ---MRNAVQRGFGERTAM------------------NHPMQGSAADIIKLAMNEVQRRLI 818

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE+    P      +  +   +M+        +PL  +      +
Sbjct: 819 EDGFESQLMLQVHDELDLSVPADELERLSDMVREVMSTIVE--LKVPLLVDVSSGPNW 874


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 124/477 (25%), Positives = 204/477 (42%), Gaps = 82/477 (17%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           + +   L  +L    G++   +++  ++ +L+  +I   A+  +  R  ++ ++  KL  
Sbjct: 94  ATKAADLTTWLRD-QGVETEGVAKAAVRQMLA-GDIEGAARQAVEIRAEAAKASTAKLTA 151

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET-- 352
           + +    DGR RG    YGA  TGRW+G + Q QNLPR    +  L   +      +   
Sbjct: 152 MVKCACDDGRARGLHLVYGAG-TGRWAGRLIQLQNLPRGVIKKADLAIPLIIDGDIDLVS 210

Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                PL + S  +R C+I + G   + +D + IE R+ AW+A E+WKI+AF + +    
Sbjct: 211 MLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTG 270

Query: 411 TTYAKA------------FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
                             +  P+++ S E+   GKV ELALG+ GG   F++MA+  G  
Sbjct: 271 RDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAIYG-- 328

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                                 K+     + +K AWR  H  V+
Sbjct: 329 -------------------------------------MKVTDEEADQIKVAWREAHPRVV 351

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
            LW+++ +     +   G + +       R+        + +VLPS R L Y+  + +  
Sbjct: 352 ALWRNMEDAAFNAISNPGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKR 408

Query: 579 --------------------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                +N+ T +  R  TYGG L EN +QAI+RD+L   +    
Sbjct: 409 RPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLE 468

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             GY +V+ VHDE ++E       SV    S+M   P+WA GLP+ A G+   RYRK
Sbjct: 469 AAGYPVVIHVHDEALAEVRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 524


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/535 (15%), Positives = 157/535 (29%), Gaps = 126/535 (23%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            ++  ++     ++D  A   L++ L      E  L  +   +  RG  ID         
Sbjct: 496 ALRMVEVLEARMRQDGLAE--LYESL------ELPLTPILADMERRGIAIDAAAFESFLS 547

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267
            +      L   + +       + R    L   LF    +     ++     T +  L  
Sbjct: 548 DVQGRLDTLTAAVYEAAGREF-NIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEK 606

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   D +L            L+ L   +  +GR+  T     A+ TGR S      
Sbjct: 607 LAGRHPVVDSVLEFRKLEKMRSTYLDPLPRLMDGNGRIHTTFNQ-KATATGRLSSSNPNL 665

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                          G     +R+C IA+ G  LV AD + +E R
Sbjct: 666 QNIP------------------------VRGDLGKRMRTCFIANPGSALVSADYSQVELR 701

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA ++ +   ++AF NGEDI+  T A  ++   D+VS +QR   K +            
Sbjct: 702 VLAHMSQDKALLEAFRNGEDIHARTAALVYDLAPDQVSPDQRRNAKTINF---------- 751

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+                                 +     K+  +  +   
Sbjct: 752 ----GLIYGMG------------------------------AQKLGQDLKISTSEAKEFI 777

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             + ++  G+ + +  +                                         RR
Sbjct: 778 ARYFSRLTGLKEFYDSVEATAKRQGYVTTLG--------------------------GRR 811

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNG 621
            +  D+            +              ++Q  + DI+   M          ++ 
Sbjct: 812 RLLPDIHSPNGQAYALARRQ---------AINTVIQGSAADIIKLAMLAVAEDEQLREHE 862

Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673
             ++L VHDE++ E P+    +    +  LM+          +PL  +    K +
Sbjct: 863 ARLLLQVHDELLLEVPEASARAAGARVADLMSSVKPGGEPLSVPLVVDWGVGKNW 917


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 91/599 (15%), Positives = 166/599 (27%), Gaps = 135/599 (22%)

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           + +  +  +   VL            L                  G+ L  R    +  +
Sbjct: 405 VPLEPRALVDLEVLGWLVDSADVAHGLDQLARR----------WLGRHLDDRGPLEAEAA 454

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           P         V   +              +L++     +D E  L  +   +   G  ID
Sbjct: 455 PLGARQWVEVVHPIRE----ALERRLTEDDLWRL---ATDVEIPLTRVLTDMEIHGVAID 507

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
            D++  +   +A ER +   ++     G + +      L + LF   G+     ++    
Sbjct: 508 RDVLAAIGTELATERDRALAEVRHYAGGEL-NPNSPRQLAVVLFERLGLPAGRKTKTGYS 566

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T   +L            IL               L   + +DGR+  T     A RTGR
Sbjct: 567 TDARVLESLRDAHPIVAAILRFRELDKLLSTFYEGLRSEIGADGRIHATFNQAVA-RTGR 625

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P                                 R   +A+ G  LV A
Sbjct: 626 ISSERPNLQNIP------------------------VRTDEGKRFRDAFVATEGHVLVAA 661

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA ++G++  ++  +   D++    A+ F  P ++V+ +QR++ K++   L
Sbjct: 662 DYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGVPAERVTPQQRSVAKMVTYGL 721

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                                           +    A +  + 
Sbjct: 722 --------------------------------------------SYGMEAYGLAQRLGVP 737

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               E +   + A   G+        +                                 
Sbjct: 738 PAEAEGILADFFAAFPGLRHYRDASVDAARAQG--------------------------F 771

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    D+        T      R+    G       Q ++ DI    +     
Sbjct: 772 TTTLLGRRRYLPDLDSPN---RTVRQGAERQAMNAG------TQGLAADIFKIALVRLHA 822

Query: 620 NGYD----IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                   +VL VHDE+V E        V  L   ++     +A  +PL+ +    + +
Sbjct: 823 ALSPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEHA--FALRVPLRVQSGVGRSW 879


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 105/679 (15%), Positives = 179/679 (26%), Gaps = 147/679 (21%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75
           L  +G +  +    +   A A       L          + L  +L DET    AH+   
Sbjct: 336 LAFLGTYG-SGTGRLDGIAIATSAGAAYLDPARLTQEDEAALAAWLADETKPKAAHDVKG 394

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
             +   +  G+D+       T++ A                       +       +   
Sbjct: 395 PLLALWEH-GLDLRGLTC-DTAIAAYLAMP-----------GQRSFPIEELV----LRYL 437

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGER 185
            +      P D   +                 +A REL   L              + E 
Sbjct: 438 NRELRYETPADGQASLFDDVEAGMARDLALKAQAVRELADALERHLAARGGTRLMTEVEL 497

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +   G   D      L+   +   K+  E    L  G   +      L+  L
Sbjct: 498 PLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHALV-GEQFNLGSPKQLQEIL 556

Query: 246 FLITGIDLVD---MSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           F+  G+           T    L+            ++L     +      +  L + ++
Sbjct: 557 FVKLGLPKTKKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKLRAT-VEGLIKEIA 615

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DGR+  T     A  TGR S      QN+P                             
Sbjct: 616 DDGRIHTTFNQIVA-ATGRLSSEKPNLQNIP------------------------IRTAE 650

Query: 361 SDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +R   I   G   L+ AD + IE R++A ++G++  I AF +G D +  T A+ F  
Sbjct: 651 GRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGL 710

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P D+V+ E RA  K M   L Y               L++                    
Sbjct: 711 PPDQVTPELRARIKAMNYGLAYG-----LSDFGLAGQLNIPVA----------------- 748

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                                     +K+ +  +  GV +    + +           + 
Sbjct: 749 ----------------------EARALKEEYFEEFAGVREYLNRVVDQARKDGYTETIL- 785

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     RR    D+  D         ++            
Sbjct: 786 -------------------------GRRRYLPDLTSDNRQRREMAERM---------ALN 811

Query: 600 NIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
             +Q  + DI+   M    K        ++L VHDE+V E        +  L    M   
Sbjct: 812 APIQGSAADIIKVAMLKVRKAMEGMRSRMLLQVHDELVFEVAPGELDDLIALVREHMGGA 871

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL         +
Sbjct: 872 YP--LRVPLDVSIGTGPTW 888


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/518 (15%), Positives = 151/518 (29%), Gaps = 111/518 (21%)

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            K D E T +    L      E  L  +   +   G R+D   + ++Q   ++  K+++E
Sbjct: 14  SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEE 71

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L + LF   G+ ++  ++    T   +L            IL
Sbjct: 72  KIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADIL 130

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                +      +  L + +  D ++         ++TGR S      QN+P        
Sbjct: 131 TYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSVDPNLQNIP-------- 181

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWK 398
                                   +R   +       +  +D + IE RVLA I+ ++  
Sbjct: 182 ----------------IRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHL 225

Query: 399 IKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            +AF  G+DI+ +T  + F     + V+   R   K +   + Y               L
Sbjct: 226 KEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNL 280

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + +        + FE +   + +   +     +    + L            R     +
Sbjct: 281 GITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR---------RRYLSDI 331

Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                +L        +      SA  +  +  + M              RRL    +   
Sbjct: 332 NSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------------RRLKEEKL--- 375

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                                     QA                   ++L VHDE+V E 
Sbjct: 376 --------------------------QAT------------------MLLQVHDELVFEV 391

Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           P++    +  L   +M    S    +PL  +    K +
Sbjct: 392 PESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 427


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          + IL     +      ++ L + +    GRL   
Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR   C    QN+P                                +R   
Sbjct: 564 FNQT-ATATGRLCCCDPNLQNIP------------------------VRTPLGQRIRRGF 598

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G  LV  D + IE RVLA ++G++  I+ F  G DI+  T +  F  P + V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +      ++
Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                  + L G          R     +    K + E    +                 
Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      +                            
Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                +                 +V E P     +V  L   +M      A  +PL+ E 
Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821

Query: 668 YEAKRY 673
              + +
Sbjct: 822 GIGEDW 827


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 187/663 (28%), Gaps = 151/663 (22%)

Query: 39  DEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI- 94
           D      D    T        L  +L D       H +             D+  + W  
Sbjct: 363 DGNGGYIDTAMLTPDDD--DALAAWLADPDNPKALHEAK-----LAMH---DLAGRGWTL 412

Query: 95  -----CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                 T++ A          +L +  L     E   +  E           ++D     
Sbjct: 413 GGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE---QEQFSLLDNVDEVDKQ 469

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   ++A  +       D E        L  L + E  +  +   +   G   DL L+
Sbjct: 470 AIQTLILRARAVVDLAAALDAELDLIDSTSL--LGEMELPVQQVLADMEKAGIAADLRLL 527

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKS 263
            +LQ     + +    +      G   +      L++ LF   G+     ++    T   
Sbjct: 528 TELQSQFGDQIRDA-AEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTKRTKTGYTTDAD 586

Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            L              +L     +   +  ++ L  AV++DGR+  T     A+ TGR S
Sbjct: 587 ALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLS 644

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN---GKK-LV 377
                 QN+P                            A   +R   +  +   G   L+
Sbjct: 645 STEPNLQNIP------------------------IRTNAGRQIRDAFVVGSENNGYTELM 680

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R++A ++ ++  I+AF  GED++    ++AF  PI+ ++ E R   K M  
Sbjct: 681 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAM-- 738

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                       +     GL                                   A + K
Sbjct: 739 ------------SYGLAYGLS------------------------------AYGLATQLK 756

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +L  + + A+  GV     D+ E           +                   
Sbjct: 757 ISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVL------------------- 797

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    ++      +  A  +               +Q  + DI+   M   
Sbjct: 798 -------GRRRYLPELDSSNRQIREAAERA---------ALNAPIQGSAADIIKVAMIAV 841

Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  K    ++L VHDE++ E        +  +    M         +PL+      
Sbjct: 842 DKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAYP--LDVPLEVSVGFG 899

Query: 671 KRY 673
           + +
Sbjct: 900 RSW 902


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 187/663 (28%), Gaps = 151/663 (22%)

Query: 39  DEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI- 94
           D      D    T        L  +L D       H +             D+  + W  
Sbjct: 367 DGNGGYIDTAMLTPDDD--DALAAWLADPDNPKALHEAK-----LAMH---DLAGRGWTL 416

Query: 95  -----CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                 T++ A          +L +  L     E   +  E           ++D     
Sbjct: 417 GGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE---QEQFSLLDNVDEVDKQ 473

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   ++A  +       D E        L  L + E  +  +   +   G   DL L+
Sbjct: 474 AIQTLILRARAVVDLAAALDAELDLIDSTSL--LGEMELPVQQVLADMEKAGIAADLRLL 531

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKS 263
            +LQ     + +    +      G   +      L++ LF   G+     ++    T   
Sbjct: 532 TELQSQFGDQIRDA-AEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTKRTKTGYTTDAD 590

Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            L              +L     +   +  ++ L  AV++DGR+  T     A+ TGR S
Sbjct: 591 ALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLS 648

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN---GKK-LV 377
                 QN+P                            A   +R   +  +   G   L+
Sbjct: 649 STEPNLQNIP------------------------IRTNAGRQIRDAFVVGSENNGYTELM 684

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R++A ++ ++  I+AF  GED++    ++AF  PI+ ++ E R   K M  
Sbjct: 685 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAM-- 742

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                       +     GL                                   A + K
Sbjct: 743 ------------SYGLAYGLS------------------------------AYGLATQLK 760

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +L  + + A+  GV     D+ E           +                   
Sbjct: 761 ISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVL------------------- 801

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    ++      +  A  +               +Q  + DI+   M   
Sbjct: 802 -------GRRRYLPELDSSNRQIREAAERA---------ALNAPIQGSAADIIKVAMIAV 845

Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670
                  K    ++L VHDE++ E        +  +    M         +PL+      
Sbjct: 846 DKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAYP--LDVPLEVSVGFG 903

Query: 671 KRY 673
           + +
Sbjct: 904 RSW 906


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 89/606 (14%), Positives = 155/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     GI +         +LA      ++  +                        
Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      Y         E  + L    + E+ L  +   +
Sbjct: 394 ----------GEWTEEAGERALLSERLYAALLERLKGE-ERLLWLYEEVEKPLSRVLAHM 442

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +  E ++L+E++ +L      +      L   LF   G+   
Sbjct: 443 EATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLNSRDQLERVLFDELGLPAI 501

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          D IL     S      ++ L   V     RL   
Sbjct: 502 GKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTR 561

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 562 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 596

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G KLVV D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 597 VAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLM 656

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +       +
Sbjct: 657 RRAAKTINFGVLYGMSAHRLSGE-----LAIPYEEAVAFIERYFQSYPKVRAWIEKTLAE 711

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             E    + L G          R     +    K + E    +                 
Sbjct: 712 GRERGYVETLFGR---------RRYVPDLASRVKSIREAAERMAFNMPVQGTAADL---- 758

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      L                            
Sbjct: 759 -----------------MKLAMVKLFPRLQELG--------------------------- 774

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEG 667
                +                E+V E P      V       M +   W   +PL+ E 
Sbjct: 775 --ARMLLQVHD-----------ELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVEV 819

Query: 668 YEAKRY 673
              + +
Sbjct: 820 GIGEDW 825


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/681 (13%), Positives = 176/681 (25%), Gaps = 141/681 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63
            DIE      LP      Y +Q  +        D+ +             D    + L  
Sbjct: 302 FDIE--DLMVLPVCTQQPYLDQ-QLYGFMIP-KDKTIYYISV---ENALEDTNFKKILET 354

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS-VLARTNGLPS-SLKNACLALNFS-E 120
           + +     ++     L  +          +     +        +        AL+ +  
Sbjct: 355 KEISTW--DTKEMMHLLDRY---GFKWNTFNDDLHIAGFLLNSTATDSDAVLEALHITLP 409

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIP 179
                           K + + P +   R   +        Y K+       +    L  
Sbjct: 410 ESFHDV---------SKKTKEEPAFSLNREQALCHSLTQQLYEKKGEILQSLKEENVLSL 460

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             + E  L  +  ++   G  I    + +   L+ ++ + L + I     G+I +     
Sbjct: 461 YREIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIY-SHAGMIFNINSPK 519

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            L   LF    +        T   +L          D IL     S  +   ++ L + +
Sbjct: 520 QLANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYRKISKVSSTYIDGLKKHI 579

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            SD ++  +      ++TGR S      QN+                             
Sbjct: 580 RSDQKIHTSFNQTM-TQTGRLSSSEPNLQNI------------------------SIRDE 614

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   +A  G  L+ AD + IE R+LA +A ED  IKAF  G DI+  T    FN 
Sbjct: 615 LGKEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLDIHTKTATLIFNC 674

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             +                                            +         +  
Sbjct: 675 SPE--------------------------------------------EVDEHKRRIAKTV 690

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           +  +         + +  +         K +   +  + +    L +             
Sbjct: 691 NFGIVYGQTEFGLSSQLNITRKEAGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFH 750

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            RR                                 + +  N  T +  +          
Sbjct: 751 RRREI------------------------------PEINDKNFMTREFGKRA-----AMN 775

Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652
             +Q  + D++   M    +          ++L +HDE++   PD     +  L    M 
Sbjct: 776 APIQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELIFLVPDEELDLMQKLVKETME 835

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
                   +PLKA     K +
Sbjct: 836 SAME--LKVPLKASISVGKSW 854


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/670 (14%), Positives = 183/670 (27%), Gaps = 144/670 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL---------LQYLRDETVM 67
            K  +  +  +A +T    A+  E + ++   +   +   L         +  L    V 
Sbjct: 330 TKNVLPLFVNEAGLTGVGLAFGKEDIYVFTTEQGMEISELLEQVETLSKEVDVLAIADVK 389

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
               N++            ++       T V A        LKN   + + +     +  
Sbjct: 390 ----NAM--------QYIPNVNQSVCFDTIVAAYLLNP---LKNDYESADIAREYLDILI 434

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
               I    K                 A++       R  E   E   +L    + E  L
Sbjct: 435 DDNQIDEAQKSC----------YEAYTAYESSKILRDRLKETEME---QLFD--EIEMPL 479

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                 +   G ++  + +    E + Q+   L++DI +LT G   +      L + LF 
Sbjct: 480 VFTLYDMEQNGVKVAAEALHIYGEQLGQKIVDLEKDIYELT-GETFNINSPKQLGVILFE 538

Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
             G+     ++    T   IL            IL     +       + L+  +  DGR
Sbjct: 539 KLGLPHGKKTKTGYSTSADILDKLAPEYPVVSKILEYRQLTKLKSTYADGLAGYIKDDGR 598

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           + G       + TGR S      QN+P                                +
Sbjct: 599 IHGKFNQT-ITATGRISSTEPNLQNIP------------------------VRMELGRLI 633

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   I  +G   V AD + IE R+LA  +G++  I A+    DI+  T ++ F+TP ++V
Sbjct: 634 RKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITASQVFHTPFEEV 693

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +  QR   K +   + Y        +      L + +        S FE +   +     
Sbjct: 694 TDLQRRNAKAVNFGIVYG-----ISSFGLSQDLSITKKEAAQYIESYFETYPSIKGFLDD 748

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
             +   E      + G    +           +             V             
Sbjct: 749 AVEHAKENGYVTTVFGRRRPV---------PELSSSNFMQRSFGERVAMNAPIQGTAADI 799

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
               +                RRL  ++++                              
Sbjct: 800 MKIAMNGVN------------RRLKENNMRSKLV-------------------------- 821

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
                                    DE++ E  +     V  + S  M         +PL
Sbjct: 822 ----------LQVH-----------DELLIEAYEEELEDVKEILSHEMVNAAK--LHVPL 858

Query: 664 KAEGYEAKRY 673
           + + +  K +
Sbjct: 859 EVDMHTGKNW 868


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/594 (15%), Positives = 170/594 (28%), Gaps = 133/594 (22%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            + R    S++A                 +            L  RF   SI +   D  
Sbjct: 404 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIANGSVDVE 447

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             + V+A     E         RE    L      E  L      +   G  ID + + +
Sbjct: 448 CVSMVKALLAMNEVACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 503

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
                 +E  ++ E+I +L  G   +      L + LF    + ++  ++    T   +L
Sbjct: 504 TTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVL 562

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324
                     + IL   + +         L+  ++    R+  T      + TGR S   
Sbjct: 563 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMV-TATGRLSSSD 621

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R+      G   LV AD + 
Sbjct: 622 PNLQNIP------------------------VRTEKGREIRALFYPGAGYDTLVSADYSQ 657

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++G++  IKAF  G+DI+  T A+      D+V+ E+R+  K +   + Y  
Sbjct: 658 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYG- 716

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          F  + + + +   M  +  E      + G   
Sbjct: 717 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 772

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           EL           +     +                                        
Sbjct: 773 EL---------PDINSRNFNRRSFAER--------------------------------- 790

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNG- 621
                         + +NT             KL  N V Q               +   
Sbjct: 791 --------------TAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEQNF 821

Query: 622 -YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E  ++   ++  L    M         +PL  + + A+ +
Sbjct: 822 TSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/594 (15%), Positives = 170/594 (28%), Gaps = 133/594 (22%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            + R    S++A                 +            L  RF   SI +   D  
Sbjct: 400 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIANGSVDVE 443

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             + V+A     E         RE    L      E  L      +   G  ID + + +
Sbjct: 444 CVSMVKALLAMNEVACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 499

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
                 +E  ++ E+I +L  G   +      L + LF    + ++  ++    T   +L
Sbjct: 500 TTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVL 558

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324
                     + IL   + +         L+  ++    R+  T      + TGR S   
Sbjct: 559 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMV-TATGRLSSSD 617

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R+      G   LV AD + 
Sbjct: 618 PNLQNIP------------------------VRTEKGREIRALFYPGAGYDTLVSADYSQ 653

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++G++  IKAF  G+DI+  T A+      D+V+ E+R+  K +   + Y  
Sbjct: 654 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYG- 712

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          F  + + + +   M  +  E      + G   
Sbjct: 713 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 768

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           EL           +     +                                        
Sbjct: 769 EL---------PDINSRNFNRRSFAER--------------------------------- 786

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNG- 621
                         + +NT             KL  N V Q               +   
Sbjct: 787 --------------TAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEQNF 817

Query: 622 -YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E  ++   ++  L    M         +PL  + + A+ +
Sbjct: 818 TSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 869


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/657 (16%), Positives = 184/657 (28%), Gaps = 138/657 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGI 86
             ++  A A D     L       A  + L  +L D T     H++  F      ++ G 
Sbjct: 358 GRLSGLALASDGHHAWLDPSALDEADENALAAWLADPTATKAVHDAKRFGLAC--RSHGW 415

Query: 87  DIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDS 142
           ++       T++ A          SL+      L    +         L      G  ++
Sbjct: 416 NLDGVT-SDTALAAYLVRPDLKSDSLEALATRYLGRELNPRTAAAQPTLDGLETDGENEA 474

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                  A   +            ++           L+D E  +  +   +   G   D
Sbjct: 475 AANLAALAAATRDLAEV-------LDGELASHNAAGLLADMELPVMTVLTEMEAIGITAD 527

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259
           +  +  L+   A E  +         D    + R    L+  LF   G+     ++    
Sbjct: 528 VAHLTGLESTFAAEAAEAVAAAHAAVDQTF-NLRSPKQLQEILFDKLGMPKTKRTKTGYT 586

Query: 260 TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           T    L+         + + ++ +R          ++ L   V+ DGR+  T Q   A  
Sbjct: 587 TDADSLAGLYATTQHPVLEAILRHRDREKLKQT--VSGLLAEVAEDGRIHTTYQQNVA-A 643

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                            A   +R   I + G   
Sbjct: 644 TGRLSSKDPNLQNIP------------------------VRTDAGRRIRQGFIVTEGFET 679

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R++A ++G++  I+AF +GED++ T  A+ FN     V  EQR   K M
Sbjct: 680 LMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPGSVDAEQRRRIKAM 739

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L                GL                                   + +
Sbjct: 740 SYGL--------------AYGLS------------------------------AYGLSQQ 755

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +       + + +  +  GV    + + E                             
Sbjct: 756 LGITPEEARGLMEEYFTRFGGVRDYLRTVVEEARKAGYTETMF----------------- 798

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+  D         +               +Q  + DI+   M 
Sbjct: 799 ---------GRRRYLPDLNSDNRQRRDMAERA---------ALNAPIQGSAADIMKIAML 840

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665
           N  +          ++L VHDE+V E        V  L    M         +PL+ 
Sbjct: 841 NVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVRAEMASAAELM--VPLEV 895


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/606 (14%), Positives = 155/606 (25%), Gaps = 141/606 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     GI +         +LA      ++  +                        
Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      Y         E  + L    + E+ L  +   +
Sbjct: 394 ----------GEWTEEAGERALLSERLYAALLERLKGE-ERLLWLYEEVEKPLSRVLAHM 442

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +  E ++L+E++ +L      +      L   LF   G+   
Sbjct: 443 EATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLNSRDQLERVLFDELGLPAI 501

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T  ++L          D IL     S      ++ L   V     RL   
Sbjct: 502 GKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTR 561

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                                +R   
Sbjct: 562 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 596

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G +LVV D + IE RVLA ++G++  I+ F  G+DI+  T +  F  P + V    
Sbjct: 597 VAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLM 656

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y   A           L +            F+ + +  +       +
Sbjct: 657 RRAAKTINFGVLYGMSAHRLSGE-----LAIPYEEAVAFIERYFQSYPKVRAWIEKTLAE 711

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             E    + L G          R     +    K + E    +                 
Sbjct: 712 GRERGYVETLFGR---------RRYVPDLASRVKSIREAAERMAFNMPVQGTAADL---- 758

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +L    +      L                            
Sbjct: 759 -----------------MKLAMVKLFPRLQELG--------------------------- 774

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEG 667
                +                E+V E P      V       M +   W   +PL+ E 
Sbjct: 775 --ARMLLQVHD-----------ELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVEV 819

Query: 668 YEAKRY 673
              + +
Sbjct: 820 GIGEDW 825


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 117/695 (16%), Positives = 207/695 (29%), Gaps = 164/695 (23%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-----D 56
                +DIET             + E   I L   +  D+P  + D  +   +P+      
Sbjct: 1057 KLCTLDIETTGLN---------HRED-RIRLLQISTPDQPSVVIDVFKV-PVPTLKECTW 1105

Query: 57   LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----SLKN 111
            L++ L  + V  V HN  F+        G ++       T + A+            L +
Sbjct: 1106 LVKLLGSQAV-KVLHNGKFDINFLS-HNGFNVKG-PIFDTMIAAKLLSATRFNWSCKLGH 1162

Query: 112  ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                 LN     +          +F   ++D    +           L   Y     +  
Sbjct: 1163 VAERYLNIVLDKS---------QQFSDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLK 1213

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--- 227
             E   RL  ++D E    L    +   G ++DLD +  LQ  + +E +   + +      
Sbjct: 1214 AE---RLDMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGDTLGV 1270

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVDMS--EGTLKSILSHSNITQLAKDLILNRLASS 285
            +     +      +   L     +D       + T +  LS +      + L   R  ++
Sbjct: 1271 SSNPNFNYNSQRQILQALQQQKVMDKTRRGLIQDTSERTLSRNTYHPAIQALREYR-KTN 1329

Query: 286  GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
             +       +   + S  GR+   +   GA   GR+S      Q +PR            
Sbjct: 1330 KAVTAFTEKIPNHIDSATGRIYPNINQIGAES-GRFSCDNPNLQQIPRDS---------- 1378

Query: 345  QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                                R C IA  G KLV+AD + IE R+ A IA +   I+A+ +
Sbjct: 1379 ------------------RFRECFIADKGNKLVIADFSQIELRIAADIAEDRRMIEAYNS 1420

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            GED++  T +   N PI +V+KE+R + K +   L +      F+  A            
Sbjct: 1421 GEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYA------------ 1468

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                      E      L   A   +  ++   + G+    + +
Sbjct: 1469 --------------------------ESCYGVVLSVPAAREIYDSFFKSYSGITAWHERM 1502

Query: 525  TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                     +  S+                                              
Sbjct: 1503 KAA------KPISVRTLSNRLSVFDQFSFT------------------------------ 1526

Query: 585  SQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP 640
                       +     VQ  S DI  E M             ++L +HDEI+ E P++ 
Sbjct: 1527 -----------RSLNYPVQGTSADITKEAMALLVDRVADISGKMILCIHDEIILEVPESN 1575

Query: 641  Y-FSVGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
               ++  L   M      + + +P KA G     +
Sbjct: 1576 ANKALEVLIETMETAGNKFLRYVPCKAMGSIGDSW 1610


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/603 (16%), Positives = 176/603 (29%), Gaps = 127/603 (21%)

Query: 91  KRWICTSVLARTNGLPSS---LKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYD 146
              I  S+LA   G       L +       +    ++    K L    C  S       
Sbjct: 422 GTIIDLSILAYACGDAQKVAYLSDLAELYRLNYPISSENTGMKELPENNCSISSAEAEAQ 481

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYR 200
                     +    Y    +     +  ++        +S  +  L  +   +   G  
Sbjct: 482 AQAVAVADLNKELISYFNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVLTQMERDGVA 541

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
           +D  ++ +  E  + E   + ++I KL      +      L   LF   G+      +  
Sbjct: 542 VDEAVLQRQTEAFSSEIADIADEIYKLAGHEF-NLNSPRQLAEVLFNELGLPGGKKLKSG 600

Query: 260 --TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T    L H        DLIL     S      +  L + +++D R+  T      ++T
Sbjct: 601 YSTSAEDLMHLQDLHPIVDLILRYRMLSKLLSTFIVGLHKYIAADHRIHTTFHQT-LTQT 659

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R+  IA+ G  L+
Sbjct: 660 GRLSSSDPNLQNIP------------------------ARTEEGRRIRAAFIAAPGCILI 695

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+LA ++G+   +KAFA  EDI+  T A+ F+     V+ E R        
Sbjct: 696 DADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVFHMDPVDVTSEHRR------- 748

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                         +   G+                                   A    
Sbjct: 749 -------VGKTINFSIVYGIS------------------------------AFSLAQDLH 771

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +     + A +  +     DL E     +        +R   +P L  + + R 
Sbjct: 772 ISVAEAKNYIAEYYATYPQIKAYLNDLVERAK--IDGYVETMFKRRRYIPELKSKNYNRR 829

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           +                G+   +NT                   +Q  + DI+   M N 
Sbjct: 830 LF---------------GERVAMNT------------------PIQGTAADIMRLAMVNL 856

Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEA 670
            +          ++L +HDE+V E P+  +  V  L    M +       LP   E    
Sbjct: 857 ARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRNEMERVIDLKVSLP--VELEYG 914

Query: 671 KRY 673
           K +
Sbjct: 915 KNW 917


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/671 (13%), Positives = 185/671 (27%), Gaps = 156/671 (23%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85
            +   A++  D   KL+   +   +   + +   ++T + V     ++     +    LG
Sbjct: 333 DLVGFAWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRLG 384

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +D+ +  +                      L  +    ++    +L  +      ++   
Sbjct: 385 VDLQAPAFD---------------SRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 146 DCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIND 196
              +    +     +         VE    L ++L          D E+ L  +   +  
Sbjct: 430 KGVKKALPEREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEI 489

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G  +  + +L++Q       +KL ++I +L      +      L + LF   G+     
Sbjct: 490 AGITVKKETLLEMQTENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYT 548

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL+    +      +  L + + +DG++      
Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQ 608

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 609 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 643

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429
                L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R
Sbjct: 644 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDR 703

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L                                
Sbjct: 704 RNAKAVNFGVVYG-----ISDFGLSNNL-------------------------------- 726

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   +     +     +  +  G+     ++                         
Sbjct: 727 -------GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------- 769

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+      +        R          + +Q  + DI
Sbjct: 770 ----------------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADI 804

Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662
           L   M    K          ++L VHDEIV E P +    +  L    M +       +P
Sbjct: 805 LKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVP 862

Query: 663 LKAEGYEAKRY 673
           L A+  E   +
Sbjct: 863 LIADENEGATW 873


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/592 (15%), Positives = 155/592 (26%), Gaps = 148/592 (25%)

Query: 94  ICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
               +LA       +++              +                            
Sbjct: 438 DDPLLLAYLLDPANTAMPAVAKRY-LDTDWPED----------AGTRAAIAAQLLELLPP 486

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                    Y                  ++ E+ L  +   +  RG R+D + +  L   
Sbjct: 487 QLDAARLKLY------------------TEVEKPLSGVLARMEARGVRLDSEYLQGLSLA 528

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSH 267
           +A+  ++L+  I +       S R    L   L+   G+     ++      T  + L  
Sbjct: 529 LAERLERLEAQIHEAAGREF-SIRSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEP 587

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326
                    LIL            L+ L   V+   GRL  T     A  TGR S     
Sbjct: 588 LRDEHPIIPLILEYRELEKLRGTYLDPLPRLVNPRTGRLHTTFAQT-AVATGRLSSLNPN 646

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   IA  G +LV AD + +E 
Sbjct: 647 LQNIP------------------------IRSEEGRQIRKGFIADGGFRLVAADYSQLEL 682

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R++A IAG++   +AF  G DI+  T A+        V   QR   K +           
Sbjct: 683 RLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTVN---------- 732

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G+                                   + +  +        
Sbjct: 733 ----FGVLYGMS------------------------------AHRLSNELGIPYAEATSF 758

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +   + G+ +  ++  E                                 +     R
Sbjct: 759 IENYFGIYPGIQRYIEETLEFGRQHGY--------------------------VETLYGR 792

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGY 622
           R    ++K     L  A  +L              +Q  + DI+   M          G 
Sbjct: 793 RRYVPELKARNRNLREAGERL---------AYNMPIQGTAADIMKMAMVALEPQLDALGA 843

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P      V  L   +M         +PL  E   +  +
Sbjct: 844 RMLLQVHDELLIEAPADRAEEVAALTRQVMEGVVE--LNVPLAVEAGISDNW 893


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/607 (13%), Positives = 155/607 (25%), Gaps = 145/607 (23%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +         ++A      ++  +                        
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGE--------------- 399

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193
                               A +      +        L ++L     + ER L  +   
Sbjct: 400 ----------------FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAH 443

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  RG R+D+ L+  L   + +E ++L+ ++ +L      +      L   LF   G+  
Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502

Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +  T +  L          +LIL     S      L+ L   V    GRL  
Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                 A+ TGR S      QN+P                                +R  
Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  G  L+ AD + IE RVLA ++G++   + F  G+DI+  T A  F      V ++
Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQK 657

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y   A           L +            F+ + +  +      +
Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +       + L G          R     +    + + E    +                
Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +      L                           
Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                 +         +VL        E P+        L   +M         +PL+ E
Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820

Query: 667 GYEAKRY 673
               + +
Sbjct: 821 VGVGRDW 827


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/688 (13%), Positives = 188/688 (27%), Gaps = 149/688 (21%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ID  T S      + V  Y E    + +      + +    ++   +       ++ YL+
Sbjct: 317 IDF-TDS-----TLHVECYTEDYHNSDVVGIVV-YKEGTAYIFSEEQF-FTNEFVVDYLQ 368

Query: 63  DETVMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLAL 116
            E +        ++    +   K  G+DI  +      +++    + +     K     L
Sbjct: 369 SE-ISKTV----YDFKKILFIAKRNGVDINGE-VFDVKIVSYLLDVNAKTEIDKIVFNYL 422

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  +   GK                +   A   ++  L     +       E    
Sbjct: 423 GKIMSSDEEIYGKGAKR----TLPAQEVINPYIAEIAESIALIKPLMEEK--LAEENMTD 476

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    D E  +  +   +   G  +    + ++     +  K L+  I  L      +  
Sbjct: 477 LYK--DIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLAGSEF-NIA 533

Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               L + LF   G+  +  ++    T   +L     +     LI+     +        
Sbjct: 534 SPKQLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYRTITKLNSTYAK 593

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L + ++ +G++    +   A +TGR S      QN+P                      
Sbjct: 594 GLVKDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIP---------------------- 630

Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +  S+ + ++  D + IE RVLA IA +   I AF +  DI+  T
Sbjct: 631 --TRIEEGKKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKT 688

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            +      +D+V+   R   K +   + Y               L               
Sbjct: 689 ASDVNGVSLDEVTSSMRREAKAVNFGIVYG-----ISDFGLSNNL--------------- 728

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                    +     +     +    +GV +   D+ +      
Sbjct: 729 ------------------------GITRKRAKEFIDKYLETFKGVDKYMTDIVDFAREHG 764

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                 +                          RR    D+              +    
Sbjct: 765 YVETLFN--------------------------RRRALPDINAKN---------KIVANL 789

Query: 593 YGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-G 645
                  + +Q  + DI+   M N       T     ++L VHDE++ +           
Sbjct: 790 NARIAMNSPIQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTK 849

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  +M +  +    + LKAE      +
Sbjct: 850 EMIKIMEEAAN--LDVQLKAEASSGASW 875


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/627 (15%), Positives = 193/627 (30%), Gaps = 129/627 (20%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
            S+L     D+++  + ++   + I+  +   ID+       + +         S   + 
Sbjct: 361 LSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNSTESNYEID 418

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +   +        K EE         K   +    D           ++     +  +  
Sbjct: 419 HLASSYFNK--AYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQMQKIE 476

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E  K L    + E  L  +   +   G R D++++ ++ E I +    L+ +I K  D 
Sbjct: 477 AEGMKDLY--INVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADE 534

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF    + ++  ++    T   +L       L  D IL     S  
Sbjct: 535 QF-NINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKI 593

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L + ++   GR+         + TGR S      QN+P               
Sbjct: 594 KNTYIDGLRDVINKKTGRIHSRFNQTV-TSTGRISSTEPNLQNIP--------------- 637

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R  +++S G  LV +D + IE RVLA ++ + + I AFA+G 
Sbjct: 638 ---------IKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGL 688

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T ++ F+TP D+VS E R++ K +   + Y               L+        
Sbjct: 689 DIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYG-----ISDYGLSQNLN-------- 735

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     +     +    QG+ +   D+  
Sbjct: 736 -------------------------------IPRKEAKTYIDNYLGHFQGIKKYMNDIIH 764

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                      +                           RR    ++K     + +   +
Sbjct: 765 VGTEKGYVETLLH--------------------------RRRYIPELKAKNFNIRSFGER 798

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+   M               ++L +HDE+V + PD  
Sbjct: 799 I---------ALNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE 849

Query: 641 YFSVGTLCSLMTKNPSWAK--GLPLKA 665
              V  +C +M      A    +PL  
Sbjct: 850 ---VAEVCEIMKDVMDNALIMKVPLSV 873


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/627 (15%), Positives = 193/627 (30%), Gaps = 129/627 (20%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110
            S+L     D+++  + ++   + I+  +   ID+       + +         S   + 
Sbjct: 361 LSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNSTESNYEID 418

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +   +        K EE         K   +    D           ++     +  +  
Sbjct: 419 HLASSYFNK--AYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQMQKIE 476

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E  K L    + E  L  +   +   G R D++++ ++ E I +    L+ +I K  D 
Sbjct: 477 AEGMKDLY--VNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADE 534

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      L   LF    + ++  ++    T   +L       L  D IL     S  
Sbjct: 535 QF-NINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKI 593

Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
               ++ L + ++   GR+         + TGR S      QN+P               
Sbjct: 594 KNTYIDGLRDVINKKTGRIHSRFNQTV-TSTGRISSTEPNLQNIP--------------- 637

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R  +++S G  LV +D + IE RVLA ++ + + I AFA+G 
Sbjct: 638 ---------IKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGL 688

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T ++ F+TP D+VS E R++ K +   + Y               L+        
Sbjct: 689 DIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYG-----ISDYGLSQNLN-------- 735

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     +     +    QG+ +   D+  
Sbjct: 736 -------------------------------IPRKEAKTYIDNYLGHFQGIKKYMNDIIH 764

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                      +                           RR    ++K     + +   +
Sbjct: 765 VGTEKGYVETLLH--------------------------RRRYIPELKAKNFNIRSFGER 798

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DI+   M               ++L +HDE+V + PD  
Sbjct: 799 I---------ALNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE 849

Query: 641 YFSVGTLCSLMTKNPSWAK--GLPLKA 665
              V  +C +M      A    +PL  
Sbjct: 850 ---VAEVCEIMKDVMDNALIMKVPLSV 873


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +        +L +  +     ++    +  K   GID
Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KGID 400

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIIYAADY 668

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                         + + +NT       +      +                     + G
Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLEEEG 833

Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/607 (14%), Positives = 172/607 (28%), Gaps = 128/607 (21%)

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS-EHLTKMEEGKALIAR 134
             L ++  G  +PS +     + A      +    +   +L             KA    
Sbjct: 195 MHLLQRY-GFYVPSFK-EDLHLAAFLLHSQATDTDSLISSLGIELPETIHDLLKKAKTVE 252

Query: 135 FC-KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
            C    +       T    ++   +F            +    L    + E+ L  +   
Sbjct: 253 ACHIDRLLPVTCAWTWQLSIRQDNIFD---------ELKKDNLLDLYENIEKPLVRILFE 303

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           + ++G  ID +++ ++        + L + I ++   +  +      L   L+    +  
Sbjct: 304 MENQGIHIDENVLDEIGAKTDTILESLTQQIHEMAHMVF-NINSPKQLAGVLYDELNLKG 362

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                 T   +L     +    D++L+    S      +  L + +  D ++        
Sbjct: 363 GGKKRSTSAEVLEKLKGSHPIIDVLLDYRKYSKIKSTYIEGLKKHIQQDSKIHTCFNQAM 422

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            ++TGR S      QN+                                 +R   +A  G
Sbjct: 423 -TQTGRLSSSDPNLQNI------------------------SVRDEQGREIRKAFVAQKG 457

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            KL+ AD + IE R+LA +A E   I+AF  G DI+  T +  F+   + V+ + R + K
Sbjct: 458 YKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAK 517

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G      SQ +K                          
Sbjct: 518 TVN--------------FGIVYGQTEFGLSQQLK-------------------------- 537

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +         + + A +  + Q    L +              RR+          
Sbjct: 538 ----ISRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETMFHRRRMI--------- 584

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                                 + +  N  T +  +            +Q  + D++   
Sbjct: 585 ---------------------PEINDKNFMTREFGKRA-----AMNAPIQGSAADLIKIA 618

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M    +          ++L +HDE++   PD     +  L    M +       +PLKA 
Sbjct: 619 MIRVDQAMKEKNVKSKMLLQIHDELIFLVPDDELEVMQALVKEAMEQAME--LKVPLKAS 676

Query: 667 GYEAKRY 673
               + +
Sbjct: 677 INFGQSW 683


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/597 (17%), Positives = 181/597 (30%), Gaps = 139/597 (23%)

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +P   W    + A                N+     +        + F   ++D+     
Sbjct: 402 LPLSLWFDLGLAAYLLDP--------EQRNYGFPRLRD-------SLFADPTVDASAVSP 446

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                  A        + D     +L +RL      E  L  +   +   G  +DL  + 
Sbjct: 447 DDTARAAALLAEVYTARLDTAGLTDLVERL------ELPLIPVLLDMERAGIGVDLRSLA 500

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKS 263
                +A +  +L++++  L      + R +  L   LF   G+         +  T + 
Sbjct: 501 AFGAEVATDLTRLEKELHTLAGHPF-NPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQD 559

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            L     +    D IL            L+ L +   +DGR+  TL    A+ TGR S  
Sbjct: 560 ALERLAGSNPLVDRILEFRKLEKLRSTYLDPLPKLADADGRIHTTLN-NMATATGRLSSS 618

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                          G     +R C +A  GK LV AD + 
Sbjct: 619 NPNLQNIP------------------------IRGPLGRRMRECFVAGPGKTLVAADYSQ 654

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++GE   + AFA G DI+  T +  F+ P  ++  ++R   K +        
Sbjct: 655 IELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTINF------ 708

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 + +    +   A 
Sbjct: 709 --------GLLYGMGP------------------------------QKLSRDLGIKLDAA 730

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     +  +  G+   + ++ E                                     
Sbjct: 731 KAFIAKYFERLSGLSAFYDNIVESAKTQGYVTTL-------------------------- 764

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
           + RR +  D++   S      SQ  R+          +VQ  + DI+   M  A K    
Sbjct: 765 AGRRRLLPDIESKNS---QLASQARRQAI------NTVVQGGAADIIKMAMLAAHKDADL 815

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              G  +VL +HDE++ ETP     +    L  LM      A  +PL  +      +
Sbjct: 816 KRAGAVMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVDWGTGHTW 870


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +        +L +  +     ++    +  K   GID
Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KGID 400

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 668

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                         + + +NT       +      +                     + G
Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLEEEG 833

Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +        +L +  +     ++    +  K   GID
Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KGID 400

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 668

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                         + + +NT       +      +                     + G
Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLEEEG 833

Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/667 (13%), Positives = 183/667 (27%), Gaps = 145/667 (21%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +        +  +G+
Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLK------RNYVGL 387

Query: 87  ---DIPSKRW-ICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKG 138
              DI          + +      ++ ++      +   S     ++  GK         
Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNARDIGVLANSYQESYVQSDEIIYGKGKKQ-HSVD 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +  T+ + +          K   E  +     L      E  + ++   +   G
Sbjct: 447 VDTLYAHMATKVDVLD-----KLKAKIMPELQQHEQVHLYKNI--EIPIAVILAKMEIAG 499

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            ++    ++K++  +      L   I +L      +      L + LF    +     ++
Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTK 558

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L          D IL+    S      +N L + + +DG++         +
Sbjct: 559 TGYSTSVDVLEKLKYQSPIVDDILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
            TGR S      QN+P                                +R   +      
Sbjct: 618 ATGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433
            L   D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     ++N+                           
Sbjct: 714 AVNF--------------GIVYGISDYGLAKNL--------------------------- 732

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  +    K   +           +               
Sbjct: 733 ---GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR +  D+      + +      R          + +Q  + DI+   
Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814

Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M          K    ++L +HDE++ + P      + TL   +M +       +PL A+
Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIAD 872

Query: 667 GYEAKRY 673
                 +
Sbjct: 873 ANWGHNW 879


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/667 (12%), Positives = 182/667 (27%), Gaps = 145/667 (21%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +        +  +G+
Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LNKILEDKNIAKQVFDLK------RNYVGL 387

Query: 87  ---DIPSKRW-ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKG 138
              DI          + +      ++  +          F     ++  GK         
Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVD 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +  T+ + +   +         +    +  ++L    + E  + ++   +   G
Sbjct: 447 VDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAG 499

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            ++    ++K++  +      L   I +L      +      L + LF    +     ++
Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFDKLKLTPAKKTK 558

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    S      +N L + + +DG++         +
Sbjct: 559 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
            TGR S      QN+P                                +R   +      
Sbjct: 618 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433
            L   D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     ++N                            
Sbjct: 714 AVNF--------------GIVYGISDYGLAKN---------------------------- 731

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  +    K   +           +               
Sbjct: 732 --LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR +  D+      + +      R          + +Q  + DI+   
Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814

Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M          K    ++L +HDE++ + P      + TL   +M +       +PL A+
Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIAD 872

Query: 667 GYEAKRY 673
                 +
Sbjct: 873 ANWGHNW 879


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 181/663 (27%), Gaps = 123/663 (18%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
                  +   A A         +  E   A    L ++L D       H++    +   
Sbjct: 352 WGRGTGEVDALAVATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAKGPMLALA 411

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKG 138
              G+ +       T++ A           L +  L     E     E G  L       
Sbjct: 412 -ARGMTLAGVT-SDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQL------T 463

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                  D  R   V+A  +       D +  R    RL  L + E  L  +   +   G
Sbjct: 464 IDGIADDDAARELAVRARAVLELAEALDRDLERRGAARL--LHEVELPLTGVLAAMERAG 521

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D+D  ++L   +  + K  ++           +      ++  LF   G+     ++
Sbjct: 522 IAVDVDHFIQLSASLGGQAKDTEQQAHAAVGHEF-NLGSPKQVQQVLFEELGLPKTKRTK 580

Query: 259 G---TLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
               T    L+           + IL     +    + +++L    + DGR+  T     
Sbjct: 581 TGYTTDSEALNSLRAKSDHPVLEHILRWREVAKLKSI-VDSLIPMAAEDGRIHTTFNQMV 639

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR S      QN+P                                +R   +   G
Sbjct: 640 A-ATGRLSSTDPNLQNIP------------------------IRTAEGRQIREGFVVGEG 674

Query: 374 K-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              L+ AD + IE R++A ++G++  I+AF +G D +  T ++ F  P +++  E RA  
Sbjct: 675 YECLLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARI 734

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K M   L Y               L +      V     F+ +     +   +  +  + 
Sbjct: 735 KAMNYGLAYGLSP-----FGLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQD 789

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
              + ++G          R     +    +   E    +                     
Sbjct: 790 GYTETILGR---------RRYLPDLTSDNRQRREMAERMALNAPIQG------------- 827

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                  I + S R       +G  S +                                
Sbjct: 828 --SAADIIKVASLRVDRALRERGLASRM-------------------------------- 853

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
            +               DE+V E        +  L    MT         PL+      +
Sbjct: 854 -LLQVH-----------DELVFEVAPGELEELKELVREQMTGAYELRA--PLEVAMGTGR 899

Query: 672 RYR 674
            ++
Sbjct: 900 TWQ 902


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/667 (12%), Positives = 180/667 (26%), Gaps = 145/667 (21%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +        +  +G+
Sbjct: 344 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LNKILEDKNIAKQVFDLK------RNYVGL 394

Query: 87  ---DIPSKRW-ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKG 138
              DI          + +      ++  +          F     ++  GK         
Sbjct: 395 QRLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVD 453

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +  T+ + +   +         +    +  ++L    + E  + ++   +   G
Sbjct: 454 VDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAG 506

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVD 255
            ++    ++K++  +      L   I +L      +      L + LF    +       
Sbjct: 507 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLAPAKKTK 565

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    S      +N L + + +DG++         +
Sbjct: 566 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 624

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
            TGR S      QN+P                                +R   +      
Sbjct: 625 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 660

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433
            L   D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K
Sbjct: 661 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 720

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     ++N                            
Sbjct: 721 AVNF--------------GIVYGISDYGLAKN---------------------------- 738

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  +    K   +           +               
Sbjct: 739 --LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 782

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR +  D+      + +      R          + +Q  + DI+   
Sbjct: 783 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 821

Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M          K    ++L +HDE++ + P      + TL   +M +       +PL A+
Sbjct: 822 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIAD 879

Query: 667 GYEAKRY 673
                 +
Sbjct: 880 ANWGHNW 886


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 169/659 (25%), Gaps = 119/659 (18%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTL 84
               I   A A         D T+        L   L D     V H   +         
Sbjct: 374 RDGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVKWALRAL-WAR 432

Query: 85  GIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           G  +       T++ A           L   CL     E      EG  L         D
Sbjct: 433 GWTLDGVE-SDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGDD 491

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                   A  ++A          D E TR     L+     E  L  +   + D G   
Sbjct: 492 QDTARRELA--LRALATVELALALDAELTRREGLDLLHNL--ELPLAEVLARMEDAGIAA 547

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSE 258
           DL  +  L+   A   ++  ++  +L      +      L+  LF   G+          
Sbjct: 548 DLTYLRDLEAEFAAAVRQAVDEAHRLVGREF-NLGSPKQLQQILFDELGLPKTKRIKTGY 606

Query: 259 GTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
            T    L+            ++L     +      +  L + ++ DGR+  T      + 
Sbjct: 607 TTDADALAWLAAQTDNELPVILLRHRDQTKLRTT-VEGLIKTIAEDGRIHTTFHQTV-TA 664

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                            A   +R   +   G  +
Sbjct: 665 TGRLSSAEPNLQNIP------------------------VRTDAGRRIRRAFVVGEGYEQ 700

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ ++  I+AF +G D +    ++ F  P+D+V  E RA  K M
Sbjct: 701 LLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAM 760

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y               L +      V     F  + +   +   +  +       
Sbjct: 761 NYGLAYG-----LSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYT 815

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             ++G          R     +    +   E    +                        
Sbjct: 816 ATILGR---------RRYLPDLNSDNRQRREMAERMALNAPIQG---------------S 851

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
               I L   R        G  S +                                 + 
Sbjct: 852 AADIIKLAMLRVDRALRENGLASRM---------------------------------LL 878

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                          E+V E       +V  L    M++       +PL         +
Sbjct: 879 QVHD-----------ELVLEVAPGELDTVRELVVEHMSQAQQ--LRVPLAVSVGVGPNW 924


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/667 (12%), Positives = 182/667 (27%), Gaps = 145/667 (21%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +        +  +G+
Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LNKILEDKNIAKQVFDLK------RNYVGL 387

Query: 87  ---DIPSKRW-ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKG 138
              DI          + +      ++  +          F     ++  GK         
Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVD 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +  T+ + +   +         +    +  ++L    + E  + ++   +   G
Sbjct: 447 VDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAG 499

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            ++    ++K++  +      L   I +L      +      L + LF    +     ++
Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTK 558

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    S      +N L + + +DG++         +
Sbjct: 559 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
            TGR S      QN+P                                +R   +      
Sbjct: 618 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433
            L   D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     ++N                            
Sbjct: 714 AVNF--------------GIVYGISDYGLAKN---------------------------- 731

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  +    K   +           +               
Sbjct: 732 --LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR +  D+      + +      R          + +Q  + DI+   
Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814

Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M          K    ++L +HDE++ + P      + TL   +M +       +PL A+
Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIAD 872

Query: 667 GYEAKRY 673
                 +
Sbjct: 873 ANWGHNW 879


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 169/720 (23%), Positives = 282/720 (39%), Gaps = 120/720 (16%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER----ILFKKTLGID-IPSKR 92
                           P+DL+ ++ +      A N  FE     ++  K+ G   +  ++
Sbjct: 4   GKGRRAYIP---GGPKPTDLIDHIANGG-PIAAWNITFEFWIWNMVLAKSEGWPWLQLEQ 59

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY---DCTR 149
             C    AR   LP SL  A  AL       K ++GK LI + C+    +        T 
Sbjct: 60  CYCDMAKARRFSLPGSLDTAAKAL---RTAEKDKKGKQLIGKLCRPVSATKARPEPRWTL 116

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
               Q +     YC +DV++   +   +  ++  ER+ WL DQ IN RG  +D++ +   
Sbjct: 117 YTAPQDYADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNA 176

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
            +++ Q  ++   ++  +T+G + S  +   L  +L    G  + ++   T+   L   +
Sbjct: 177 LDIVGQTTRRFTMELAAITNGAVGSVSEVAKLTDFL-ATVGCRMHNLKSETVAETLERDD 235

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           +   A+ ++  R A +G+ + KL +L   +SSDGRLR    F+GA  TGRWS    Q QN
Sbjct: 236 LNPTARRILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQN 294

Query: 330 LPRQERSEEILTQTIQALNRGETI------------------------------------ 353
           L  +    +      + + +   +                                    
Sbjct: 295 LTSKGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLK 354

Query: 354 -----------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                       DP+ L S C+R   IA+ GKK V  D + IEA VLA +A  +W+I+ F
Sbjct: 355 HRNLDLIIDIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVF 414

Query: 403 ANGEDIYVTTYAKAFNTPID----------KVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
                IY  + +K    P +               ++++GKV ELA GY G    +K   
Sbjct: 415 RTHGKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFG 474

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
           +                  FED +  +   L  +D  PE            +   + W  
Sbjct: 475 A---------------EEHFEDDDAMKKAILGWRDASPEIVEFWGGQYRR-DPYTRKWVR 518

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           ++ G       L       +   G     +   V  +        ++  LPS R L Y  
Sbjct: 519 EYYG-------LEGAVIMAILNPG-----KCYAVGDITYAVFDDVLYCRLPSGRFLQYHQ 566

Query: 573 VKG-----------DCSYLNTATS------QLMRERTYGGKLTENIVQAISRDILCEGMK 615
            K              +++   T+        +R  TYGG+L EN+ QA + D+    MK
Sbjct: 567 PKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQAYAMK 626

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               NGY +V+  HDE+++E P   + SV  + +LMT    W +  P++A G+E  RY+K
Sbjct: 627 QCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIRAAGWEDDRYQK 685


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/603 (15%), Positives = 161/603 (26%), Gaps = 146/603 (24%)

Query: 76  ERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133
           +     +T GI   IP+  WI   +                     E        K +  
Sbjct: 383 DLKSLLRTNGIWRTIPNTHWIDLGLATYLLDP-------------EERDYSWP--KLVAR 427

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                 + +          ++ W+      K       EL   L      E  L  +   
Sbjct: 428 WGSVFGLSAGNPGLI---ALKVWEQLR--NKLKTAQLLELMDSL------ELPLIPVLAD 476

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  +D   +      +      L E I     G   + R    L   LF    +  
Sbjct: 477 MEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGSF-NIRSAQQLGDILFNQLELPA 535

Query: 254 VDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
              +      T + +L   +      D IL            L  L   +  DGR+  T 
Sbjct: 536 AKKTRGGQASTSQEVLEKLSGQHPIIDTILEYRKLEKLRSTYLEPLPRLIGKDGRVHTTF 595

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A+ TGR S      QN+P                          G     +RSC  
Sbjct: 596 NQL-ATATGRLSSSNPNLQNIP------------------------IRGSLGQRMRSCFT 630

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           AS G  L+ AD + +E RVLA  + +   + AF  G DI+  T +  +    ++V+ ++R
Sbjct: 631 ASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADER 690

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +                    G+                                
Sbjct: 691 RNAKTINF--------------GLIYGMGP------------------------------ 706

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            + A +        +   + +    Q + + +  +                         
Sbjct: 707 QKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKEYGYVTTI------------ 754

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                         + RR +  D+  +   L     +              I+Q  + DI
Sbjct: 755 --------------AGRRRLLPDIHSENIQLQALARRQ---------AINTIIQGSAADI 791

Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLP 662
           +   M          K    ++L VHDE+V E P+     V   +  LM+       G P
Sbjct: 792 IKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPEDNAKEVGKRIAMLMSNVTP--GGKP 849

Query: 663 LKA 665
           L  
Sbjct: 850 LIV 852


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/594 (15%), Positives = 170/594 (28%), Gaps = 133/594 (22%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            + R    S++A                 +            L  RF   SI +   D  
Sbjct: 404 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIANGSVDVE 447

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             + V+A     E         RE    L      E  L      +   G  ID + + +
Sbjct: 448 CVSMVKALLAMNEVACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 503

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
                 +E  ++ E+I +L  G   +      L + LF    + ++  ++    T   +L
Sbjct: 504 TTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKMKLPIIKKTKTGYSTDAEVL 562

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324
                     + IL   + +         L+  ++    R+  T      + TGR S   
Sbjct: 563 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMV-TATGRLSSSD 621

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R+      G   LV AD + 
Sbjct: 622 PNLQNIP------------------------VRTEKGREIRALFYPGTGYDTLVSADYSQ 657

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++G++  IKAF  G+DI+  T A+      D+V+ E+R+  K +   + Y  
Sbjct: 658 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYG- 716

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          F  + + + +   M  +  E      + G   
Sbjct: 717 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 772

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           EL           +     +                                        
Sbjct: 773 EL---------PDINSRNFNRRSFAER--------------------------------- 790

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNG- 621
                         + +NT             KL  N V Q               +   
Sbjct: 791 --------------TAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEQNF 821

Query: 622 -YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE+V E  ++   ++  L    M         +PL  + + A+ +
Sbjct: 822 TSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/631 (15%), Positives = 173/631 (27%), Gaps = 133/631 (21%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL 116
           +L D     V H+S    + F    G ++       T + A           L +  L  
Sbjct: 390 WLADAERPKVLHDSKPAVLAFAAH-GWELQGIA-RDTQIAAYLARPDQRSYDLTDLALRY 447

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              E           +     G          +   +QA          D E +R+  + 
Sbjct: 448 LHRELRV-DAPETGQLTLDGLGDEGV----AEQNLMLQARATLDLADAIDAELSRDGEQS 502

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              ++  E  L  +  T+   G   D D + +L+   A E K   +   ++      +  
Sbjct: 503 ARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREF-NLG 561

Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLA---SSGSAIL 290
               L+  LF   G+           T    L           L         +   +  
Sbjct: 562 SPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST- 620

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++ L ++VS DGR+  T     A  TGR S      QN+P                   
Sbjct: 621 -VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP------------------- 659

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G   L+ AD + IE R++A ++ +D  I+AF +G D +
Sbjct: 660 -----IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 714

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T +  F   +  V+ +QR   K M                    GL            
Sbjct: 715 AATASSVFTVEVGDVTADQRRKIKAMNY--------------GLAYGLS----------- 749

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  + +  +       + + + A   GV    +++     
Sbjct: 750 -------------------AFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARAR 790

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+  D         ++  
Sbjct: 791 QDGYTSTIL--------------------------GRRRYLPDLVSDNRQRREMAERM-- 822

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M +             ++L VHDE+V E       +
Sbjct: 823 -------ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERET 875

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  L    M +       +PL+    E   +
Sbjct: 876 LEALVRKQMGEAYP--LSVPLEVSVGEGHDW 904


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 112/667 (16%), Positives = 189/667 (28%), Gaps = 140/667 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTL 84
             +T  A A  D           +A P D   L  +L D +     H + +      +  
Sbjct: 335 GDVTALAIAASDGECAYI--AASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGR 391

Query: 85  GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           G  +       T++ A          +L +  L       L     G+  ++       D
Sbjct: 392 GWTL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRY-LKRELRAETSGQEQLSLL----DD 445

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +   D   A                ++   E  +    LSD E  L +    I   G  +
Sbjct: 446 TEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIAV 505

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256
           D   +  LQ   A +         ++      +      L++ LF    +          
Sbjct: 506 DSAHLHDLQSRFASQVADAANSAYEVI-DKQINLGSPKQLQVVLFEELDMPKTKKTKTGY 564

Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L+ +   +    L    +L    ++   +  ++ L +AV+ DGR+  T     A
Sbjct: 565 TTDAEALQGLFDKTGHPFLEH--LLAHRDATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 621

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                            A   +R   +   G 
Sbjct: 622 -ATGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 656

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PI++V+ E R   K
Sbjct: 657 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 716

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M                    GL                                   A
Sbjct: 717 AMSYG--------------LAYGLS------------------------------AYGLA 732

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K+     +    A+ A+  GV      + E                           
Sbjct: 733 SQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLY--------------- 777

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+  D            R            +Q  + DI+   
Sbjct: 778 -----------GRRRYLPDLNSDN---RQRREVAERAA------LNAPIQGTAADIIKVA 817

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666
           M N  K          ++L VHDE+V E   +    V  L    M         +PL   
Sbjct: 818 MINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LSVPLDVS 875

Query: 667 GYEAKRY 673
               + +
Sbjct: 876 VGTGRSW 882


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 183/652 (28%), Gaps = 133/652 (20%)

Query: 39  DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D      D         + L ++L D       H +        +  G  +       T+
Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLNGVT-SDTA 416

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + A          +L +  L     E   +  E      +      D       +   ++
Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE----QQQLSLLDDDDTDVAAAQTAILR 472

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           A  +       D E  R     L  L+D E  +  L   +   G  +DL ++  LQ   A
Sbjct: 473 ARAVIDLADALDAELDRIDSTGL--LTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFA 530

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNIT 271
            + +    +      G   +      L++ LF    +     ++    T    L      
Sbjct: 531 DQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDK 589

Query: 272 --QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   +L     +   +  ++ L  +V+ DGR+  T     A  TGR S      QN
Sbjct: 590 TGHPFLQHLLAHRDVTRLKVT-VDGLLNSVADDGRIHTTFNQTIA-ATGRLSSTEPNLQN 647

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARV 388
           +P                            A   +R   +  +G  +L+ AD + IE R+
Sbjct: 648 IP------------------------IRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRI 683

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++ ++  I+AF  GED++    ++AF  PID+V+ E R   K M             
Sbjct: 684 MAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG---------- 733

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  GL                                   + + K+     ++   
Sbjct: 734 ----LAYGLS------------------------------AYGLSSQLKISTEDAKVQMD 759

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + ++  GV      + E           +                           RR 
Sbjct: 760 QYFSRFGGVRDYLMAVVEQARKDGYTSTVL--------------------------GRRR 793

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622
              ++               R            +Q  + DI+   M    K         
Sbjct: 794 HLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIEVDKALKEHALKS 844

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E        +  L    M         +PL+      + +
Sbjct: 845 RMLLQVHDELLFEVAAGEREQIEALVRDKMGSAYP--LDVPLEVSVGFGRSW 894


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/655 (13%), Positives = 170/655 (25%), Gaps = 156/655 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP--- 89
            + +++++ +   D+         +   L    ++ + H+         +     IP   
Sbjct: 330 ISLSYNEDNIFYIDQNRSQDALITINSALFSNGILKIIHD--------TRETRKTIPTIE 381

Query: 90  --SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                     +++ +                         GK   +     + +      
Sbjct: 382 KVLGSVDDLMIMSYSLD----------------------TGKHDHSIPNIIAHNLSENVE 419

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           T +             +   E    +++R          L  +   +   G  +++  + 
Sbjct: 420 TFSAKTLIAIHEKLKQRLFKEKLFTIYERFDK------PLMKVIFNMEKNGILLNIHKLQ 473

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKS 263
           +L +   Q    L+ DI  L      +      L   LF   G+     L   S  T   
Sbjct: 474 ELSDKFQQLIAVLENDIYNLAGEKF-NIASPKQLSDVLFNKMGLNKKKKLKSGSYSTNSV 532

Query: 264 ILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           +L    I        IL+    S       + L + V   DGR+         + TGR S
Sbjct: 533 VLEELEIEGVEIASKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTNFS-TTVTATGRLS 591

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                              + +R   IA  G K++ AD 
Sbjct: 592 SSSPNLQNIP------------------------IRSKEGNLIRQTFIAPKGYKIISADY 627

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA +A      +AFANG+DI+  T  + F    D    EQ             
Sbjct: 628 SQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRR---------- 677

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+                                   A +  +   
Sbjct: 678 ---KAKSINFGIMYGISQF------------------------------GLAKRLGITIE 704

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   + + +  +    + +                                   + 
Sbjct: 705 EAAEYINYYFSCYPEIKVYMEKVVSTARQHGY--------------------------VE 738

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKN 620
               RR    D+     YL        R             Q  + DI+   M     + 
Sbjct: 739 TLFGRRCFVKDINNTIPYLRQFA---ERAAINAPL------QGTAADIIKCAMIQLFDQL 789

Query: 621 GY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               I+L VHDE++ E  +     +   +  +M         +PL+ E   +  +
Sbjct: 790 KAGKIILQVHDELLVEVENEKVQETAKLMKDVMENIVK--ISIPLEVEVKISDNW 842


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/657 (11%), Positives = 168/657 (25%), Gaps = 133/657 (20%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            +   D    L  R  +    + L + L    V     N+  + +   + LGID+ +  +
Sbjct: 341 GFVIGDGTTWLVSRDAELLKQAPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNVDF 399

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
               + +       +  +                           + +       +    
Sbjct: 400 -DLLLASYLLNTNDNSNDLGQV-ALEHD------------YHEVATDEEVYGKGAKRAIP 445

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDL 203
              Q F  +  +   A  +L   L    D           E  L  +   +   G +++ 
Sbjct: 446 DDDQTFYTHLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVNS 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             +  +   + +    +++ I         +   T  L   LF    + ++  ++    T
Sbjct: 506 QTLKDMGSKLTERLADIEDQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYST 564

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              +L          + IL     +      +  L + + S D ++         ++TGR
Sbjct: 565 AVDVLEKLADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRYLQT-LTQTGR 623

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G ++  
Sbjct: 624 LSSVDPNLQNIP------------------------VRLPEGRLIRKAFVPSHEGWQIFS 659

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMEL 437
           +D + +E RVLA I G+    + F NGEDI+ +T  + F+ P D ++ +  R   K +  
Sbjct: 660 SDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNF 719

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               + + +   +    + F+++   + +         E    + 
Sbjct: 720 GIVYG-----ISDYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVET 774

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +            R     +                      +                 
Sbjct: 775 ITHR---------RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADI------------- 812

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                          +K     +     Q   +                       +   
Sbjct: 813 ---------------IKIAMIRMKEEIKQRQLQA--------------------RMLLQI 837

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                        E+V E P      +  L   +M         +PLK E      +
Sbjct: 838 HD-----------ELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESKVGDTW 881


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 112/667 (16%), Positives = 189/667 (28%), Gaps = 140/667 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTL 84
             +T  A A  D           +A P D   L  +L D +     H + +      +  
Sbjct: 363 GDVTALAIAASDGECAYI--AASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGR 419

Query: 85  GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           G  +       T++ A          +L +  L       L     G+  ++       D
Sbjct: 420 GWTL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRY-LKRELRAETSGQEQLSLL----DD 473

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +   D   A                ++   E  +    LSD E  L +    I   G  +
Sbjct: 474 TEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIAV 533

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256
           D   +  LQ   A +         ++      +      L++ LF    +          
Sbjct: 534 DSAHLHDLQSRFASQVADAANSAYEVI-DKQINLGSPKQLQVVLFEELDMPKTKKTKTGY 592

Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L+ +   +    L    +L    ++   +  ++ L +AV+ DGR+  T     A
Sbjct: 593 TTDAEALQGLFDKTGHPFLEH--LLAHRDATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 649

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                            A   +R   +   G 
Sbjct: 650 -ATGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 684

Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PI++V+ E R   K
Sbjct: 685 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 744

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M                    GL                                   A
Sbjct: 745 AMSYG--------------LAYGLS------------------------------AYGLA 760

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K+     +    A+ A+  GV      + E                           
Sbjct: 761 SQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLY--------------- 805

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+  D            R            +Q  + DI+   
Sbjct: 806 -----------GRRRYLPDLNSDN---RQRREVAERAA------LNAPIQGTAADIIKVA 845

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666
           M N  K          ++L VHDE+V E   +    V  L    M         +PL   
Sbjct: 846 MINVQKALAEAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LSVPLDVS 903

Query: 667 GYEAKRY 673
               + +
Sbjct: 904 VGTGRSW 910


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/497 (17%), Positives = 137/497 (27%), Gaps = 105/497 (21%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E  L  +   +   G+ +D   +      +     +    IV+       +      
Sbjct: 475 YEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYAGYDF-NLNSPKQ 533

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   LF+  G+     ++    T   +L            IL     S      ++ L +
Sbjct: 534 LGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYRKLSKLKSTYVDGLLK 593

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  DGR+R T Q    +RTGR S      QN+P                          
Sbjct: 594 VVGPDGRVRSTFQQTE-TRTGRISSTEPNLQNIP------------------------IR 628

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R    A  G KLV AD + IE RVLA +A +   I AF +GEDI+ TT A+ F
Sbjct: 629 TEEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTAAQVF 688

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             P   V+   R+  K +   + Y  G       +    + +     +    S    +  
Sbjct: 689 GMPGGTVTPLMRSRAKAVNFGIVYGIG-----AFSLSQDIGVTVSEADSYIKSYLAHYAG 743

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
              +         E      L G          R     +    K        V +    
Sbjct: 744 VRKYMEDTIAFARENGYVKTLFGR---------RRYLPELAASNKVTQAFGERVARNTPI 794

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                                              R R  G + 
Sbjct: 795 QGTAADIIKI----------------------------------AMVRVFERLRREGLR- 819

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656
                   +R IL                 VHDE++ E PD        +    M     
Sbjct: 820 --------ARLIL----------------QVHDELLVEAPDDEIDRARAILKEEMEHAI- 854

Query: 657 WAKGLPLKAEGYEAKRY 673
            A  +PL+A+      +
Sbjct: 855 -ALKVPLEADTNVGDNW 870


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/505 (14%), Positives = 143/505 (28%), Gaps = 118/505 (23%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D +  L  +   +   G  +D D + +L      E  +L   I+++      +     
Sbjct: 474 YFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPK 532

Query: 240 ALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF + G+  +        T  ++L   +       L+L     +      ++ L 
Sbjct: 533 QLGHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALP 592

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
              + DGR+         + TGR S      QN+P                         
Sbjct: 593 RMRADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIP------------------------V 627

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R C +    G K + AD + IE R+LA ++ ++  + AF +G D +  T ++
Sbjct: 628 RTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F  P++ V+ E R+                                             
Sbjct: 688 VFGLPVEDVTPELRSRA------------------------------------------- 704

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A +  +    Q    +    +     + + + +   + GV                  
Sbjct: 705 -KAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAE 763

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                         R+    ++K   +   T      R      
Sbjct: 764 TMF--------------------------GRKRHIPELKAANA---TQRGFGERTAM--- 791

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               + +Q  + DI+   M    +          ++L VHDE+    P+     +  +  
Sbjct: 792 ---NHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVK 848

Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673
            +M         +PL  +   A  +
Sbjct: 849 DVMEHIVD--LRVPLDVDVSYADNW 871


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/667 (12%), Positives = 181/667 (27%), Gaps = 145/667 (21%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           A     +     + + + D  T     P  L + L D+ +     +        +  +G+
Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLK------RNYVGL 387

Query: 87  ---DIPSKRW-ICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKG 138
              DI          + +      ++ ++      +   S     ++  GK         
Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNARDIGVLANSYQESYVQSDEIIYGKGKKQ-HSVD 446

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +  T+ + +          K   E  +     L      E  + ++   +   G
Sbjct: 447 VDTLYAHMATKVDVLD-----KLKAKIMPELQQHEQVHLYKNI--EIPIAVILAKMEIAG 499

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
            ++    ++K++  +      L   I +L      +      L + LF    +     ++
Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTK 558

Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    S      +N L + + +DG++         +
Sbjct: 559 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374
            TGR S      QN+P                                +R   +      
Sbjct: 618 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433
            L   D + +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +                    G+     ++N+                           
Sbjct: 714 AVNF--------------GIVYGISDYGLAKNL--------------------------- 732

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     +     +  ++  +    K   +           +               
Sbjct: 733 ---GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR +  D+      + +      R          + +Q  + DI+   
Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814

Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M          K    ++L +HDE++ + P      +  L   +M +       +PL A+
Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLIAD 872

Query: 667 GYEAKRY 673
                 +
Sbjct: 873 ANWGHNW 879


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/505 (14%), Positives = 143/505 (28%), Gaps = 118/505 (23%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D +  L  +   +   G  +D D + +L      E  +L   I+++      +     
Sbjct: 474 YFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPK 532

Query: 240 ALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF + G+  +        T  ++L   +       L+L     +      ++ L 
Sbjct: 533 QLGHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALP 592

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
              + DGR+         + TGR S      QN+P                         
Sbjct: 593 RMRADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIP------------------------V 627

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R C +    G K + AD + IE R+LA ++ ++  + AF +G D +  T ++
Sbjct: 628 RTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F  P++ VS E R+                                             
Sbjct: 688 VFGLPVEDVSPELRSRA------------------------------------------- 704

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A +  +    Q    +    +     + + + +   + GV                  
Sbjct: 705 -KAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAE 763

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                         R+    ++K   +   T      R      
Sbjct: 764 TMF--------------------------GRKRHIPELKAANA---TQRGFGERTAM--- 791

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               + +Q  + DI+   M    +          ++L VHDE+    P+     +  +  
Sbjct: 792 ---NHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVK 848

Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673
            +M         +PL  +   A  +
Sbjct: 849 DVMEHIVD--LRVPLDVDVSYADNW 871


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A I       ++     + +T+ +        +L +  +     ++    +  K   GID
Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKRTFDAKRAIVALKW-KGID 400

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I    +    + A          +          + +    K+    + KG+  + P   
Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455

Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             A H  A ++   Y  +       +  ++    ++ E  L  +   +  +G ++D + +
Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             + E +A   K+++++I KL      +      L + LF    + ++  ++    T   
Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322
           +L            IL+           +  L + V  D  ++         ++TGR S 
Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R   +    G  +  AD 
Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 668

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA IA +   ++AF +  DI+  T    F    D+V+   R   K +   +  
Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G+     SQN                                +   
Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           A     + +     GV +   D+ +          +    R   +P +  R         
Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                         + + +NT       +      +                     + G
Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLDEEG 833

Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
               ++L VHDE++ E P      +  L   +M      A  +PLK +      +
Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/659 (13%), Positives = 173/659 (26%), Gaps = 136/659 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A +   E   +    E S   S  L Q+L D     + H++           G  +   
Sbjct: 348 IALSATPESAVVVTLDELSDADSVALRQWLMDPHYPKIVHSAKEAWHALHSFSG-GVKGV 406

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T + A           L++  +     +          +  +              
Sbjct: 407 -IADTELAAYLAFPDQRSYGLEDLSIRYVSRDIT-------PVAHQAQGSLDLGLDDTDD 458

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
               +           + ++A            + E  L ++   +   G  +DL+ +  
Sbjct: 459 ALRALANRAAVLPQLAQALDAELSDRSLTALYQEMELPLTVVLAQMEHVGVAVDLEQLRS 518

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSIL 265
           L    A +  +  +   +   G   +      L+  LF    +           T  + L
Sbjct: 519 LDAFFAHQGSEAQKAAFEAI-GRQVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAASL 577

Query: 266 SHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           +           + L+  R ++       +  L ++V+ DGR+  T Q   A  TGR S 
Sbjct: 578 ADLFVKTGHPFLQHLLEYRDSTKLRQT--VEGLLKSVADDGRVHTTFQQTVA-ATGRLSS 634

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADL 381
                QN+P                                +R   +   G   L+ AD 
Sbjct: 635 TDPNLQNIP------------------------IRTETGRRIRQGFVVGEGLDTLLTADY 670

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++ +D  I AF  GED++    A+ F   ID+V+ + R+  K M   L  
Sbjct: 671 SQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGVSIDEVTPQMRSKVKAMSYGL-- 728

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         GL                                   + +  +   
Sbjct: 729 ------------AYGLS------------------------------AFGLSKQLNISVG 746

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
               +   +  +  GV      +             +                       
Sbjct: 747 EASTLMDDYFTRFGGVRDYLTSVVARARTTGYTETIM----------------------- 783

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620
               RR    D+  D            R            +Q  + D++ + M       
Sbjct: 784 ---GRRRYLPDLTSDN---RQRRENAERVA------LNAPIQGSAADVIKQAMLGVDAAF 831

Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   ++L +HDE++ E           +    M         +PL       + +
Sbjct: 832 RSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMAGAMQ--LSVPLAVSVGTGQNW 888


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/591 (15%), Positives = 164/591 (27%), Gaps = 127/591 (21%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            + R    S++A                 +            L  RF   SI S   D  
Sbjct: 400 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIASGSVDVE 443

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             + V+A     E         RE    L      E  L      +   G  ID + + +
Sbjct: 444 CVSMVKALLAMNEAACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 499

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265
                 +E  ++ ++I +L  G   +      L + LF    + ++  ++    T   +L
Sbjct: 500 TTTRFKEELAQVQQEIYELA-GENFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVL 558

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324
                     + IL   + +         L+  ++    R+  T      + TGR S   
Sbjct: 559 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMV-TATGRLSSSD 617

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                                +R+      G   LV AD + 
Sbjct: 618 PNLQNIP------------------------VRTEKGREIRALFYPGAGYDTLVSADYSQ 653

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++G++  IKAF  G+DI+  T A+      D V+ E+R+  K +   + Y  
Sbjct: 654 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKAINFGIIYG- 712

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +          F  + + + +   M  +  E      + G   
Sbjct: 713 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 768

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           EL           +     +                                        
Sbjct: 769 EL---------PDINSRNFNRRSFAERTAMNTPIQGTAADIIKL---------------- 803

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                           +N    +L  +                                 
Sbjct: 804 ---------------AMNQMEQKLEEQNF----------------------------KSR 820

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           ++L VHDE+V E  ++   ++  L    M         +PL  + + A+ +
Sbjct: 821 LLLQVHDELVLEVVNSELEAIEELLRNTMQSVVE--LQVPLIVDVHHAENW 869


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 97/631 (15%), Positives = 173/631 (27%), Gaps = 133/631 (21%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL 116
           +L D     V H+S    + F    G ++       T + A           L +  L  
Sbjct: 380 WLADAERPKVLHDSKPAVLAFAAH-GWELHGIA-RDTQIAAYLARPDQRSYDLTDLALRY 437

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              E           +     G          +   +QA          D E +R+  + 
Sbjct: 438 LHRELRV-DAPETGQLTLDGLGDEGV----AEQNLMLQARATLDLADAIDAELSRDGEQS 492

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              ++  E  L  +  T+   G   D D + +L+   A E K   +   ++      +  
Sbjct: 493 ARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREF-NLG 551

Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLA---SSGSAIL 290
               L+  LF   G+           T    L           L         +   +  
Sbjct: 552 SPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST- 610

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++ L ++VS DGR+  T     A  TGR S      QN+P                   
Sbjct: 611 -VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP------------------- 649

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +   G   L+ AD + IE R++A ++ +D  I+AF +G D +
Sbjct: 650 -----IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 704

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T +  F   +  V+ +QR   K M                    GL            
Sbjct: 705 AATASSVFTVEVGDVTADQRRKIKAMNY--------------GLAYGLS----------- 739

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  + +  +       + + + A   GV    +++     
Sbjct: 740 -------------------AFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARAR 780

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           RR    D+  D         ++  
Sbjct: 781 QDGYTSTIL--------------------------GRRRYLPDLVSDNRQRREMAERM-- 812

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M +             ++L VHDE+V E       +
Sbjct: 813 -------ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERET 865

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  L    M +       +PL+    E   +
Sbjct: 866 LEALVRKQMGEAYP--LSVPLEVSVGEGHDW 894


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 163/538 (30%), Gaps = 111/538 (20%)

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           PY+    +      L G       +   E   RL+   + E  L  +  ++   G  +D 
Sbjct: 412 PYEEDMGDTADIAALPGLCDALANKLEAEGLTRLME--EIELPLVEVLASMEHTGVLVDQ 469

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE-- 258
           D V +  + ++ E ++L+E+I     G   +      L   LF    I        ++  
Sbjct: 470 DGVRRFGDALSGEIRQLEEEIY-TLAGKQFNIASPKQLGQVLFEDLEIPHPQGKKKTKTG 528

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
              T   +L           LIL     +      +  L + V+ DGR+    +    +R
Sbjct: 529 SFSTNAEVLEKLRGAYPIVSLILRYRQLTKLNSTYVAGLLKTVAPDGRIHTCFKQTE-TR 587

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                +R   +A  G+ L
Sbjct: 588 TGRISSTEPNMQNIP------------------------VRTELGKEMRKFFVAPRGRIL 623

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R+LA +  +    +AF +G DI+ +T A+ F  P + V+ + R+  K + 
Sbjct: 624 LDADYSQIELRILANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTPQMRSAAKAVN 683

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y  G       +    + +     +       E++ + E     + +         
Sbjct: 684 FGIIYGIG-----AYSLSQDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAERTGFVS 738

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            L G          R +   +    K + +                              
Sbjct: 739 TLFGR---------RREVPELKSHNK-IQQAA---------------------------- 760

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR+  +              ++   R Y     E                 
Sbjct: 761 --------GRRIAMNTP---IQGTAADIIKIAMIRVYRRLARE----------------- 792

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             +    ++L VHDE++ E           +    M     W   +PL AE  + + +
Sbjct: 793 --QLDARLILQVHDELIVEAAVQDADRAAVILREEMEHA--WDMAVPLTAEVGKGESW 846


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/594 (15%), Positives = 169/594 (28%), Gaps = 151/594 (25%)

Query: 94  ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T++ A          SL   C             EG ++  +    +  +   +C  +
Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVP-------EGNSIQEKSITVAALNDILNCKIS 421

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
               A  L                      +D E  L  +   +   G  ID D +    
Sbjct: 422 ETGSAAVL----------------------TDIEIPLATVLVAMEREGVSIDADGIKAFG 459

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
           + + ++ +K+  +I +       +      L   LF    +     ++    T   +L  
Sbjct: 460 KEVCEKAEKISREIYEYAGYEF-NIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLES 518

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                    LI    A +      +  L + V  DGR+  T +    +RTGR S      
Sbjct: 519 LMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDGRIHSTFKQTE-TRTGRISSAEPNI 577

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R    A +G  LV AD + IE R
Sbjct: 578 QNIP------------------------VRTPLGREMRRFFTAKDGYLLVDADYSQIELR 613

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA I+G++   KAF +G DI+  T ++ FN PI+ V+ + R+  K +            
Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+                                   +    +         
Sbjct: 664 ----GIVYGIG------------------------------AFSLSKDIGVSVPKASEYI 689

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +++ +K+ G+    +                  RR                         
Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRR------------------------- 724

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKN------ 620
                      Y+    ++    + +G ++     +Q  + DI+   M            
Sbjct: 725 -----------YIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLEESGL 773

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E  +     V   L   M         +P+  +    K +
Sbjct: 774 DARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/661 (12%), Positives = 183/661 (27%), Gaps = 145/661 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82
           A     +    D        +   ++ +   LL  L D+ +     N  F+     +   
Sbjct: 339 ADFVGFSLKMGDN----IYVSNDVSLLTKQPLLSLLEDQAIAK---NV-FDLKRTMVGLY 390

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136
            LGI   +  +    + +      ++  +           +              I  + 
Sbjct: 391 RLGIKSHNMNY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPD----------IDIYG 439

Query: 137 KGSIDSPPYDCTRANHV--QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           KG   + P +    NH+  +   +         + T      L      E  +  +   +
Sbjct: 440 KGKKAAIPEETVFFNHLAGKVLAIEVLKPTLLKKLTEHEQDDLYETI--EMPVANVLAKM 497

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G + D   +++L    AQ   +L+ DI  L  G   +      L   LF   G+  +
Sbjct: 498 EITGLKTDASTLVQLGNDFAQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLGLPPI 556

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             ++    T   +L            +L+    +      +  L + +  DGR+    Q 
Sbjct: 557 KKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYQQ 616

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              + TGR S      QN+P                                +R   + S
Sbjct: 617 T-LTATGRLSSVDPNLQNIP------------------------VRLEEGKKIRKAFVPS 651

Query: 372 --NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
             +G      D + +E RVLA ++G++   +AF  G DI+  T  K F+    ++V+   
Sbjct: 652 NSDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPNEVTPNM 710

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE + + + +     + 
Sbjct: 711 RRHAKAVNFGIVYG-----ISDYGLSKNLGISRKQAKEFIDNYFEQYPKIKDYMDKEINF 765

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVP 547
             E    + ++           R     +     ++        +       A  +  + 
Sbjct: 766 ARENGYVETIMHR---------RRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKIA 816

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
            + M++   ++H+                                               
Sbjct: 817 MINMQKKLDELHLKT--------------------------------------------- 831

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
               + +                 ++ + P     ++  +   +M         +PL A+
Sbjct: 832 ----KMLIQVHDE-----------LIFDVPADELETIKKVVPEVMQNAVQ--LDVPLVAD 874

Query: 667 G 667
            
Sbjct: 875 S 875


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/594 (15%), Positives = 169/594 (28%), Gaps = 151/594 (25%)

Query: 94  ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
             T++ A          SL   C             EG ++  +    +  +   +C  +
Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVP-------EGNSIQEKSITVAALNDILNCKIS 421

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
               A  L                      +D E  L  +   +   G  ID D +    
Sbjct: 422 ETGSAAVL----------------------TDIEIPLATVLVAMEREGVSIDADGIKAFG 459

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267
           + + ++ +K+  +I +       +      L   LF    +     ++    T   +L  
Sbjct: 460 KEVCEKAEKISREIYEYAGYEF-NIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLES 518

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                    LI    A +      +  L + V  DGR+  T +    +RTGR S      
Sbjct: 519 LMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDGRIHSTFKQTE-TRTGRISSAEPNI 577

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                                +R    A +G  LV AD + IE R
Sbjct: 578 QNIP------------------------VRTPLGREMRRFFTAKDGCLLVDADYSQIELR 613

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA I+G++   KAF +G DI+  T ++ FN PI+ V+ + R+  K +            
Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+                                   +    +         
Sbjct: 664 ----GIVYGIG------------------------------AFSLSKDIGVSVPKASEYI 689

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +++ +K+ G+    +                  RR                         
Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRR------------------------- 724

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKN------ 620
                      Y+    ++    + +G ++     +Q  + DI+   M            
Sbjct: 725 -----------YIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKESGL 773

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L VHDE++ E  +     V   L   M         +P+  +    K +
Sbjct: 774 DARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 180/632 (28%), Gaps = 156/632 (24%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112
           +L  Y  D           F+        G++  +     T++ A          SL   
Sbjct: 336 ELKAY-ADSDSTKY----TFDIKDTLTVSGLEKLNNNKFDTTLAAYLVDPDSNDYSLSRL 390

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C             EG ++  +    +  +   +C  +    A  L              
Sbjct: 391 CAQYGVP-------EGNSIQEKSITVAALNDILNCKISETGSAAVL-------------- 429

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                   +D E  L  +   +   G  ID D +    + + ++ +K+  +I +      
Sbjct: 430 --------TDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF 481

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF    +     ++    T   +L           LI    A +    
Sbjct: 482 -NIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALTKLQN 540

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L + V  DGR+  T +    +RTGR S      QN+P                  
Sbjct: 541 TYVTGLLKVVGEDGRIHSTFKQTE-TRTGRISSAEPNIQNIP------------------ 581

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R    A +G  LV AD + IE RVLA I+G++   KAF +G DI+
Sbjct: 582 ------VRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T ++ FN PI+ V+ + R+  K +                    G+            
Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNF--------------GIVYGIG----------- 670

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  +    +         +++ +K+ G+ Q  +       
Sbjct: 671 -------------------AFSLSKDIGVSVPKASEYIRSYLSKYSGIAQYMELTVAKAK 711

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                      RR                                    Y+    ++   
Sbjct: 712 RDGYVETMFGRRR------------------------------------YIKELAAKNKN 735

Query: 590 ERTYGGKLT-ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
            + +G ++     +Q  + DI+   M               ++L VHDE++ E  +    
Sbjct: 736 LQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAE 795

Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            V   L   M         +P+  +    K +
Sbjct: 796 KVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 91/608 (14%), Positives = 169/608 (27%), Gaps = 146/608 (24%)

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
           ++   F   +G   P   W  + + A       +   A +   F   +       +    
Sbjct: 389 YDLKSFWHKIGAKTPVAAW-DSQLAAYVLKAGDTSDFAKIYTRFMADVLPDLASPSQ--- 444

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                     Y+                    V    +L             L  +  ++
Sbjct: 445 ---------LYNAQLNFATTLKSQLQTVQGEKVYQELDL------------PLARVLLSM 483

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G RID DL+ K  E +A++  ++++ I +   G   +      L + LF   G+   
Sbjct: 484 ERLGVRIDKDLLAKQSEELAKDIAEIEKQIHEAA-GESFNVGSPKQLGVILFEKLGLPAG 542

Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
             ++    T + +L           L+L     S      ++ L   +   D R+  +  
Sbjct: 543 KKTKTGYSTDEEVLLGLEHP--IAKLVLQWREMSKLKSTYVDALPTMIDPKDERVHTSFN 600

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                VR   IA
Sbjct: 601 QA-LTTTGRLSSTQPNLQNIP------------------------IRTARGQQVRKAFIA 635

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           +   KL+  D + IE R+LA I+ +    KAFA   DI+  T A+ F  P+  V+ E R 
Sbjct: 636 APRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEHRR 695

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
                                                         +A +  +       
Sbjct: 696 SA--------------------------------------------KAVNFGIAYGQGAF 711

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A    +  T  + + + +  + + V +      +                        
Sbjct: 712 GLAENLGISRTEAKDIIERYFNRFKNVREYIDGTIKMAHEKGY----------------- 754

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                    +     RR    +++     L        R            +Q  + D++
Sbjct: 755 ---------VETLFGRRRYIDELQSKNMALK---KFGERAAINAP------IQGTASDLV 796

Query: 611 CEGMKNA-TKNGYDIVLTVHDEIVSETPDTPYFSVGT----LCSLMTKNPSWAKGLPLKA 665
            + M     K    ++L VHDE++ E       ++      L S+M         +PLK 
Sbjct: 797 KKAMIEVFEKVPVRMLLQVHDELIFE---DFEENLQKHSPQLVSIMENVMK--LKVPLKV 851

Query: 666 EGYEAKRY 673
                  +
Sbjct: 852 NYAIGNNW 859


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/648 (14%), Positives = 166/648 (25%), Gaps = 138/648 (21%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             D T+           ++ D     V HN+     +  +  G  +       T++ A  
Sbjct: 371 WLDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEH-GWQLEGVTM-DTALAAYL 428

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L               +A       +           +     
Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPA--AAADGQLAFGADDRAEQDALMAQARAVLDLGDA 486

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    K    A          L D E    +L   +   G   D   +  +++  A   +
Sbjct: 487 FTTRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQ 538

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273
           +  ++          +      L+  LF   G+     ++    +               
Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHE 597

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              L+L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P  
Sbjct: 598 LPVLMLRHREQAKLRVT-VEGLIKTIATDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392
                                         +R   +   G   L+ AD + IE RV+A +
Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF +GED++ T  ++ F    D V  E R   K M   L             
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------- 738

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GL     SQ +                                      ++   +  
Sbjct: 739 -AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYFE 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV      + E           +                           RR    D
Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626
           +  D      A  ++              +Q  + DI+   M    K          ++L
Sbjct: 802 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKALTEAGLTSRMLL 852

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDEIV E        V  +    M          PL       K +
Sbjct: 853 QVHDEIVLEIAKGERKQVEEILRHEMANAVELRA--PLDVSVGVGKDW 898


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 108/779 (13%), Positives = 202/779 (25%), Gaps = 200/779 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-------- 54
           ++ +D ET    P        Y     +   A A        +    Q  +         
Sbjct: 24  RVALDTETYGSNPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLP 78

Query: 55  -SDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----- 107
              + Q  L       V HN+ ++R +   TL I +       T V              
Sbjct: 79  REAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLK 138

Query: 108 -------SLKNA---------------------CLALNFSEHLTK--------------- 124
                   L+                               H  K               
Sbjct: 139 EWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVH 198

Query: 125 -----MEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKRDVEATRELFK 175
                      L+ R  +   +      T        +    +   Y   D   T  L++
Sbjct: 199 NGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWE 258

Query: 176 R------LIPLS-----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER------- 217
                  L P       + E  +  +      RG  +D + + +++E I           
Sbjct: 259 HVEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEA 318

Query: 218 KKLDEDIVKLTDGIIRSS-RQTYALRMYLFLITGIDL--------VDMSEGTLKSIL--- 265
           ++L + ++        +       L   L+ + G  +           S+  +  +L   
Sbjct: 319 QELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLS 378

Query: 266 -SHSNITQLAKDLILNRLA---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
                   LAK  +  + A            +++ E V   GRL       G + +GR S
Sbjct: 379 PKDKKKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMS 437

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QNLPR    E      +Q                  +R   +A  G   V AD 
Sbjct: 438 SSNPNLQNLPRLLPEEVAEKPYLQ---------------GIDIRKAFVADPGYIFVSADY 482

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA-------KAFNTPIDKVSKEQRAIGKV 434
           A +E  V A ++G+         G D++  T            +    +  K+ R   KV
Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +  AL Y G                 +          FE +   ++    +  +  E   
Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            +             +  +         DL +    + ++   +                
Sbjct: 598 VE--------YPIYGYIKR--------MDLPQALRKLPKDKWPLVLN------------- 628

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                   P +R+  Y+ ++                          ++Q  S  ++ + +
Sbjct: 629 ------NDPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661

Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666
               +          +++ VHDEIV    +     V  +    M +      G+ LKAE
Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/658 (13%), Positives = 171/658 (25%), Gaps = 134/658 (20%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK--TL 84
            A +   A +  +   +     +    P+  LQYL  +    V     ++   F      
Sbjct: 327 DATLYGFALS-KENKNEYITLEDARKDPA-FLQYLATKNDKAV-----YDAKNFYHACHK 379

Query: 85  GIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSE-HLTKMEEGKALIARFCKGSIDS 142
              I         + A       S  +      +F +    +   GK    +    +  S
Sbjct: 380 NNLIAVDVNFDIMLAAFLVDQTISDYEKLAEKYHFDQSIHKEDIYGKKGKPKLIDFAQQS 439

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                 +   +QA  L+      D        K L      E  L  +   +   G   D
Sbjct: 440 ------KYAMLQAENLYSIVALLDETLQEMEMKDLFDTI--EMPLTRVLYAMEKEGVYCD 491

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
             ++ K+ +    +   L   I ++      +      L   L+   G+        T  
Sbjct: 492 KAVLQKIADETEAKINALSLQIYEIAGMEF-NINSPKQLASVLYDELGLKAGKKR-STAA 549

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L           L+L               L++ + +DG++         ++TGR S 
Sbjct: 550 DVLEKLVHVHPIIPLLLEHRKYQKIYSTYAIGLAKHILADGKIHTLFNQIQ-TQTGRLSS 608

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+                                 +R   +AS G  L+ AD +
Sbjct: 609 SEPNLQNI------------------------SVRNEEGKGIRKAFVASEGHVLLSADYS 644

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A E+  I AF +  DI+  T  + F+   D+V    R   K +       
Sbjct: 645 QIELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIFDVAHDEVDANMRRSAKTVN------ 698

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G      S+                                 +    
Sbjct: 699 --------FGIVYGQSDFGLSEQ------------------------------LGISRKE 720

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                + + A +  +                     +                       
Sbjct: 721 AHTFIEKYFASYPKIKTFMDATIAYCEEHGYVKTLYN----------------------- 757

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    ++      +     +               +Q  + D++   M +  +   
Sbjct: 758 ---RRRYIKEIADKNYMMREFGKRA---------AMNAPIQGSAADLIKMAMIHIYQKMQ 805

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L +HDE++ +  +     +  +    M         +PL A+    K +
Sbjct: 806 EEKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNVMK--LKVPLIAQANIGKSW 861


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/505 (14%), Positives = 143/505 (28%), Gaps = 118/505 (23%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D +  L  +   +   G  +D D + +L      E  +L   I+++      +     
Sbjct: 474 YFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPK 532

Query: 240 ALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L   LF + G+  +        T  ++L   +       L+L     +      ++ L 
Sbjct: 533 QLAHILFEVLGLRTLRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTYIDALP 592

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
              + DGR+  +      + TGR S      QN+P                         
Sbjct: 593 RMRADDGRVHTSFN-ETVTTTGRLSSSEPNLQNIP------------------------V 627

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R C +    G   + AD + IE R+LA ++ ++  + AF +G D +  T ++
Sbjct: 628 RTEFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F  P++ VS E R+                                             
Sbjct: 688 VFGLPVEDVSPELRSRA------------------------------------------- 704

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +A +  +    Q    +    +     + + + +   + GV                  
Sbjct: 705 -KAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAE 763

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                         R+    ++K   +   T      R      
Sbjct: 764 TMF--------------------------GRKRHIPELKAANA---TQRGFGERTAM--- 791

Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               + +Q  + DI+   M    +          ++L VHDE+    P+     +  +  
Sbjct: 792 ---NHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVK 848

Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673
            +M         +PL  +   A  +
Sbjct: 849 DVMEHIVD--LRVPLDVDVSYADNW 871


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/635 (13%), Positives = 175/635 (27%), Gaps = 151/635 (23%)

Query: 62  RDETVMCVA-HNSLFERILFKKT-----LGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
            D   + +A +N      LFK         +D     +  T ++A        P S+++ 
Sbjct: 414 EDAPKLKIASYNIKRIWHLFKNNTELDLYDLDTNKFLFYDTELMAYLLEPTEAPHSIEDM 473

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                             +   + +  +     D       +   L       +      
Sbjct: 474 ------------------MNRYYGQFDLTPYGQDWQAVC-ERGAILLDLISPLEDILQER 514

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
              +L      E  L  +   +  RG ++D  ++ +++  I     ++   I ++     
Sbjct: 515 NQWQLYKNI--ELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKIFEIAGEEF 572

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF    + +V  ++    T    L   +       L+L+         
Sbjct: 573 -NLNSPKQLGYILFEKLQLPVVKKTKTGYSTDAKTLETLSHDYEICKLLLDYRQLHKLKT 631

Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             L  L + +S   G++  T      + TGR S      QN+P                 
Sbjct: 632 TYLVGLKDLISKTTGKIHTTYNQT-ITATGRLSSTDPNLQNIP----------------- 673

Query: 349 RGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R    I ++ +  + AD + IE R+LA ++ +   I+AF   +D
Sbjct: 674 -------IKLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQD 726

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           I+  T A+ F     +V++E R+  K +   + Y              GL          
Sbjct: 727 IHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGIS---------DYGLS--------- 768

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                      +  +     +     +  +  GV +    +   
Sbjct: 769 --------------------------RQLGISRKQAKTYIDNYLTRFSGVKEYMDQIVNQ 802

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                      +                          RR    D+      + +A    
Sbjct: 803 AKMNGYVETLYN--------------------------RRRNLPDISHRNFNIRSAA--- 833

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD--------IVLTVHDEIVSETPDT 639
            R            +Q  + DI+ + M    K            ++L VHDE++ E    
Sbjct: 834 ERTAI------NTPIQGTAADIIKDAMVKVEKELEKQDLLDKAALLLQVHDELILEINKE 887

Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               V   +  +M         +PL  +      +
Sbjct: 888 VLSDVATKVKEIMENIIE--LKVPLTVDLKTGPNW 920


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/666 (13%), Positives = 174/666 (26%), Gaps = 141/666 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +     +  +E       T        +L      +     H+        K   G  +
Sbjct: 362 DVHGIGLS-SEESAAFIPLTGLDEAAEQVLASWLKGSAPKAVHDLK---SALKALSGRGL 417

Query: 89  PSKRW-ICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                   TS+ A           L +    L   E    +   K               
Sbjct: 418 DLDGVVDDTSISAYLIQPERRNYDLADLS--LYHLETPMTVSASKDAGQLDLG----LEG 471

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            D  +   ++A+                  ++L+     E  L  +   +   G  +  +
Sbjct: 472 DDGAQEAVLRAFATQKLSSFFAPILLERNAEQLLTGL--ELPLARVLSGMELAGVAVSKE 529

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261
            +  L     +  +    +   +    + +      L+  LF   G+      +    T 
Sbjct: 530 TLDTLMADFGKTIETAQTEAYAIIGHEV-NLGSPKQLQTVLFDELGMPKTKKIKTGFSTD 588

Query: 262 KSILSHS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              L+             +     ++      +  L +++ SD R+  T     A  TGR
Sbjct: 589 AEALADLTTKHPHPFLLQLQAYRDATKLRQT-VEGLIKSIGSDTRVHTTYAQNVA-ATGR 646

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-----ASNGK 374
            S      QN+P                                +R   +       + +
Sbjct: 647 LSSNNPNLQNIP------------------------IRSEEGRRIRGAFVVGQKSTKSYE 682

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            L+ AD + IE R++A ++G++  I+AF +GED++    +  FN    +V+   R+  K 
Sbjct: 683 TLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGSHIFNVEPQEVTSAMRSKVKA 742

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           M   L Y        +      L+                                    
Sbjct: 743 MSYGLVYG-----LSSFGLSKQLN------------------------------------ 761

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +       + K +  +   V    + + E                            
Sbjct: 762 ---ISVDEARTLMKDYFDRFGAVRDYLRGVVEQAR------------------------- 793

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
             D       SRR    ++  D   L   + +               +Q  + DI+   M
Sbjct: 794 -LDGFTETIESRRRYLPELTSDNRQLREMSERA---------ALNAPIQGSAADIIKRAM 843

Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
                          ++L VHDE+V E  +     V  L  + M    +    +PL  + 
Sbjct: 844 LGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQM--AVAANLTVPLDVQV 901

Query: 668 YEAKRY 673
              K +
Sbjct: 902 GIGKSW 907


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 108/665 (16%), Positives = 182/665 (27%), Gaps = 142/665 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAM-PSDLLQY---LRDETVMCVAHNSLFERILFKKTLGI 86
            L A A  D             M P D+      L D  V    H + +     +     
Sbjct: 355 WLVAIAGADGHGAAI---RTETMTPEDVRALDGWLADPAVPKAFHEAKWATHALRGGGFA 411

Query: 87  DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           +I       T + A          +L +  L     +   +    K L         D  
Sbjct: 412 EIAGVT-TDTGLAAYIARPGQRSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGED-- 468

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                  +  +A  +       D    +     L+     E  L  +   + + G  +D 
Sbjct: 469 --KEADDSITEAAAIRELGGALDDVLDKAGSADLLRT--MELPLTFVLARMEEAGIAVDQ 524

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------- 256
           D +  L    A   K+  E    +    I +      L++ LF   G+            
Sbjct: 525 DGLAGLHADFAARVKQAAESAYSVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTKTGHTT 583

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
               L+ +   +    L    +L    ++         L +A+  DGR+  T +   A  
Sbjct: 584 DADALQWLFEKTEHPFLL--YLLEHRDATRLMTT-AQGLIKAIGPDGRIHTTFRQDVA-A 639

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                             +  +R   +   G + 
Sbjct: 640 TGRLSSTDPNLQNIP------------------------VRTDEARRIRGVFVVGEGHEA 675

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G+D  I+AF  GED++    ++AF  PID+V  E R   K M
Sbjct: 676 LMTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAM 735

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               GL                                   A +
Sbjct: 736 SYG--------------LAYGLS------------------------------AFGLASQ 751

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             + G   +    A+ A+  GV      + E                             
Sbjct: 752 LGVSGEEAKAQMDAYFARFGGVRDYLHAVVEEARRKGYTETLF----------------- 794

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+  D         +               +Q  + DI+   M 
Sbjct: 795 ---------GRRRYLPDLTSDNQQQRAVAERA---------ALNAPIQGSAADIIKVAMI 836

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
           +  +          ++L VHDE+V E  D     +  L    M         +P+     
Sbjct: 837 HVAEALAEREMRSRMLLQVHDELVLEVADGEREELAALVSEQMGSAIELL--VPMDVSVG 894

Query: 669 EAKRY 673
               +
Sbjct: 895 FGANW 899


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/600 (14%), Positives = 160/600 (26%), Gaps = 137/600 (22%)

Query: 94  ICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
               V A            ++     L  S        GK           D    D   
Sbjct: 424 FDLQVAAYLLDPLSSSYPTEDIARDQLALSIPSYSEFFGKKK--------ADQIWEDPEE 475

Query: 150 ANHVQAWQLFGEY------CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
             H   +  +  Y       K       +  + L    + E  L      +   G  ++ 
Sbjct: 476 VEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYE--EVELPLVYTLYDMETAGIAVEK 533

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGT 260
           + +    + +     +L+E I +   G   +      L   LF   G+           T
Sbjct: 534 EALKSYGDQLVGRINELEEGIYREA-GETFNINSPKQLGEVLFGQLGLPGARKTKTGYST 592

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L    +       +L     +       + L++ ++ DGR+  + Q    + TGR 
Sbjct: 593 AADVLDPLAVNYQIVRDVLEFRQLTKLKSTYADGLAKVIADDGRIHSSFQQTV-TATGRL 651

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R    A  G   V +D
Sbjct: 652 SSTEPNLQNIP------------------------IRMELGKEIRRVFPAMEGCVFVDSD 687

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE RVLA ++ +   I+A+  G+DI+  T +  F+TP ++V+ +QR+  K +     
Sbjct: 688 YSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNF--- 744

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+                                   A    +  
Sbjct: 745 -----------GIVYGIS------------------------------AFGLAKDLGISR 763

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +     + A +  +      L E                                  
Sbjct: 764 EEAQEYIDGYFAAYPRLHDYLDGLVEFARKEGY--------------------------A 797

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
           V    RR    ++K              R            VQ  + DI+   M      
Sbjct: 798 VTLFGRRRPVPELKNSNFMQRQFG---ERVAMNAP------VQGTAADIIKIAMVRVHDR 848

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                    ++LTVHDE++ ET +     V  +    M         + L+ + +  + +
Sbjct: 849 LAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMRGAAQ--LSVELEIDTHSGRNW 906


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 168/380 (44%), Gaps = 61/380 (16%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
             K+ +  R   S S++ K   + +   +D R  G LQFYGA+RTGRW+G + Q QNLPR
Sbjct: 16  EVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPR 75

Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
               +    +++     GET     +      S  +R+  I S G + +VAD + IEARV
Sbjct: 76  NYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPSKGHRFIVADYSAIEARV 135

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446
           LAW+AGE+  + AF NGED+Y  T +  F  P++K   + E R  GK+  LA GY G   
Sbjct: 136 LAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVG 195

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             K M                                         A+K  L     + +
Sbjct: 196 ALKAMG----------------------------------------ALKMGLSEDELQPI 215

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             AWRA +  ++QLW D+       +  G  ++         L   +    + I LPS R
Sbjct: 216 VDAWRAANPNIVQLWHDVDNAATRAISTGRPVTL------GNLGFEKKSGMLFINLPSGR 269

Query: 567 RLVYSDVKGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           RL Y       +     +          +  +  TYGGKL ENIVQA +RD+L E +   
Sbjct: 270 RLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEAITRI 329

Query: 618 TKNGYDIVLTVHDEIVSETP 637
              G+ IV+ +HDE+V + P
Sbjct: 330 ENAGHRIVMHIHDEVVIDEP 349


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 109/740 (14%), Positives = 214/740 (28%), Gaps = 125/740 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------P 54
            ID+ET     +             +         +          S M          P
Sbjct: 87  SIDVETDGLDTI----------HDELAGVCLYSPSQKGIYAPVNHVSNMTKMRIKNQISP 136

Query: 55  SDLLQYLR---DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSL 109
             + + L+   D  +  + HNS F+       LG+ +    W  T + A         SL
Sbjct: 137 EFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPAW-DTYLAAMLLNENESHSL 195

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K+       +E   +    K             PP            Q F  Y  ++   
Sbjct: 196 KSLHSKYVRNEENAE--VAKFNDLFKGIPFSLIPPDVAYMYAAYDPLQTFELYEFQEQYL 253

Query: 170 T--------RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           T          L K    L + E  L  +   +   G  +D D + +++E       + +
Sbjct: 254 TPGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQDKLAEIREQFTANMNEAE 313

Query: 222 EDIVKLTDGIIR--------------------------SSRQTYALRMYLFLITGIDLVD 255
           ++  +L                                S      L +  + I G+   +
Sbjct: 314 QEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPTQLAILFYDIMGLKSPE 373

Query: 256 MSE--GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
             +  GT +SI+ H +        +L     +                D R+  T + YG
Sbjct: 374 RDKPRGTGESIVEHFDND--ISKALLKYRKYAKLVSTYTTLDQHLAKPDNRIHTTFKQYG 431

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A +TGR S      QN+P +                              VR    AS G
Sbjct: 432 A-KTGRMSSENPNLQNIPSRG-------------------------EGAVVRQIFAASEG 465

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             ++ +D +  E R LA ++G++    A+    D+Y    +K +  P ++  +       
Sbjct: 466 HYIIGSDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPYEECLEFYPDGTT 525

Query: 434 VME------------LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
             E            L L Y  GA           +++     N      F ++ +   +
Sbjct: 526 NKEGKLRRNSVKSVLLGLMYGRGANSIAE-----QMNVSVKEANKVIEDFFTEFPKVADY 580

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
            +++Q Q  +        G    L   +       + +   +  +       +  +  A 
Sbjct: 581 IIFVQQQAQDLGYVQTATGRRRRLPDMS-------LPEYEFEYIDASKNEDFDPFNFDAD 633

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTEN 600
           +  +         K    +      +    ++K               +      +   +
Sbjct: 634 QQMDDTVPEHIIEKYWAQLDRAWGFK-KKQEIKDQAKAEGILIKDNGGKIADAQRQCLNS 692

Query: 601 IVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETP-DTPYFSVGTLCSLMTK 653
           ++Q  + D+    M          + G+ +++ VHDE++ E P          L  +M +
Sbjct: 693 VIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAKRGAERLTEVMIE 752

Query: 654 NPSWAKGLPLKAEGYEAKRY 673
                  LP+K +    +R+
Sbjct: 753 AAKDIISLPMKCDPSIVERW 772


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/677 (13%), Positives = 192/677 (28%), Gaps = 149/677 (22%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           D E+ S   + KV +    +   I           +      +++           +E +
Sbjct: 335 DEESYSRNYIDKVFISLNEKNFQI----------HINEIYNEDKNKAVELFKLLFENEGI 384

Query: 67  MCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V     ++  +       +GI      +    + A       S               
Sbjct: 385 SKVG----YDVKVPCSILYKMGIRFLKLEF-DIKIAAYLIDSSRS--------------- 424

Query: 124 KMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
              E K +I         +    D  +    +       Y +   +      + L  L  
Sbjct: 425 -DYELKDIIRQYTGVEISE----DDEKFFSKETVLFSKVYSELTKKIEEAHMEEL--LYK 477

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E+ L  +  ++   G+++D D +++ +     E  K+ ++I  L++    +      L 
Sbjct: 478 VEQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLSEEEF-NINSPKQLG 536

Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    + ++  ++    T   +L          + I+     +      +  L   +
Sbjct: 537 KILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQLTKLYSTYIEGLKAVI 596

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             D ++  +      + TGR S      QN+P                            
Sbjct: 597 QEDDKIHSSFNQTV-TTTGRLSSTEPNLQNIP------------------------IKYE 631

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   +       ++ AD + IE RVLA IA ++  I AF N  DI+  T ++ F 
Sbjct: 632 MGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVFK 691

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            PID+V+  QR+  K +   + Y  G       +    L + +    +   + FE + + 
Sbjct: 692 VPIDEVTSAQRSNAKAVNFGIVYGIG-----DFSLAKNLKISRKEAKLYIDTYFERYPKV 746

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGS 537
           + +   +  +    +    L+           R     +    K +        +     
Sbjct: 747 KLYMDDIVKEAKVNSYVTTLMNR---------RRFIPEIKSSNKIVRSFGERLAMNTPIQ 797

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            SA  +  +  + +              RRL  + +K                       
Sbjct: 798 GSAADIIKIAMVNVY-------------RRLEENKLKSKL-------------------- 824

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
                           +                E++         +V ++    M K   
Sbjct: 825 ----------------ILQVHD-----------ELILNVYKEEIDNVKSVVKEEMEKVLQ 857

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL+ +      +
Sbjct: 858 --LKVPLEVDISVGSNW 872


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/654 (14%), Positives = 195/654 (29%), Gaps = 125/654 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           +   A A DD+ V   D       + + L  + R E      +N   +    K   GI +
Sbjct: 328 LMGVALASDDD-VYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNA-GIHV 385

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            +      ++        + +    L ++     +    GK    +       SP     
Sbjct: 386 HNIAL-DLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKE-WGQLSLPIAKSP---AN 440

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            A +   +       K+ +    ++        + E  L  +  TI   G  +D++ + +
Sbjct: 441 PAQYFGGFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE 500

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L+ ++++E   L +DI  L      + +    L   L+   G+  +D +  T   +L   
Sbjct: 501 LERILSEELAMLTDDIYTLAGAPF-NIKSPKQLSEVLYNKLGLKPIDKARSTKAEVLEAL 559

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
           +      + IL   A        +  L   V     R+  T    G + TGR +      
Sbjct: 560 SGEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQMG-TVTGRLACQDPNL 618

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEA 386
           QN+P                                +R            + AD + IE 
Sbjct: 619 QNIP------------------------IRSERGRLLRKAFCNTHQNNYFLSADYSQIEL 654

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA ++ ++    AF + EDI+  T ++ F+ P+++V+K+QR   K +   +       
Sbjct: 655 RFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII------ 708

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                    Q    +   K+  +  + +
Sbjct: 709 --------------------------------------YGQQAYGLSKILKISVSEAQKL 730

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             A+  ++  V +   +                                 ++ +     R
Sbjct: 731 IDAYFDRYPEVARFINETVSQA--------------------------CENLRVKTLLGR 764

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKN 620
                    +    N       R  + G       +Q  + +++   M          K 
Sbjct: 765 ---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLSDALEKRKL 814

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              ++L +HDE++ E P+     + TL   +M         +PL       K +
Sbjct: 815 KSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 170/657 (25%), Gaps = 133/657 (20%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            +   D    L  R  +      L + L    V     N+  + +   + LGID+ +  +
Sbjct: 341 GFVIGDGKTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNVDF 399

Query: 94  ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
               + +       +  +                +   GK                    
Sbjct: 400 -DLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAKR-------------AIP 445

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDL 203
           A+    +    +  +   +    LFK+L         +D E  L  +   +   G +++ 
Sbjct: 446 ADDQVFYTHLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNA 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             +  +   + +    ++  I         +   T  L   LF    + ++  ++    T
Sbjct: 506 QTLKDMGSKLTERLADIESQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYST 564

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              +L          + IL     +      +  L + + S D ++         ++TGR
Sbjct: 565 AVDVLEKLADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRYLQT-LTQTGR 623

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378
            S      QN+P                                +R   +    G ++  
Sbjct: 624 LSSVDPNLQNIP------------------------VRLPEGRLIRKAFVPSHAGWQIFS 659

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMEL 437
           +D + +E RVLA I G+    + F NGEDI+ +T  + F+ P D ++ +  R   K +  
Sbjct: 660 SDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNF 719

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y               + + +   +    + F+++   + +         E    + 
Sbjct: 720 GIVYG-----ISDYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVET 774

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +            R     +                      +                 
Sbjct: 775 ITHR---------RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADI------------- 812

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                          +K     +     Q   +                       +   
Sbjct: 813 ---------------IKIAMIRMKEEIKQRQLQA--------------------RMLLQI 837

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                        E+V E P      +  L   +M         +PLK E      +
Sbjct: 838 HD-----------ELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESKVGDTW 881


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/667 (15%), Positives = 181/667 (27%), Gaps = 141/667 (21%)

Query: 27  QAVITLCAYAWDDEPVKL--WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           Q      A A   + V     D T        L  +L D T   V H +           
Sbjct: 355 QGDAWGIALAAGGQGVAYDLADITPDDE--QALATWLADPTAPKVLHGAKTAWHALA-AR 411

Query: 85  GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           GI +       T + A           L +        E     ++ +  +     G+  
Sbjct: 412 GIGLDGV-VFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDDDAQGALDLDLGGAGT 470

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               + TRA  V            D  A   L       +D E  L  +   +   G   
Sbjct: 471 QGVREATRAAAVADLAQALAGQLDDRGAASLL-------TDVELPLSAVLARVEATGIAT 523

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256
           D   +  L+   A +  +   +        + +      L+  LF    +          
Sbjct: 524 DTAYLTGLERGFADQVAQAAAEAYDAIGHEV-NLGSPKQLQEVLFGELDMPKTKKTKTGY 582

Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L  + + +    L    +L    ++   +  +  L ++V  DGR+  T Q   A
Sbjct: 583 TTDAAALAELYAKTGHPFLEH--LLAHRDAAKLRVT-VEGLLKSVHPDGRIHTTFQQTIA 639

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                            A   +R       G 
Sbjct: 640 -ATGRLSSTEPNLQNIP------------------------IRTEAGRQIRRAFRVGEGF 674

Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           + L+ AD + IE R++A ++G++  I+AF  GED++    ++ F      V+ E R+  K
Sbjct: 675 ESLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVK 734

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M   L                GL                                   +
Sbjct: 735 AMSYGL--------------AYGLS------------------------------AFGLS 750

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            +  +     + +   + A+  GV +    + E           +               
Sbjct: 751 QQLGIATGEAQGLMDDYFARFGGVREYLDGVVEEARATGYTATVL--------------- 795

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+  D         ++              +Q  + DI+   
Sbjct: 796 -----------GRRRYLPDLTSDNRQRRQMAERM---------ALNAPIQGSAADIIKLA 835

Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666
           M    +          ++L VHDE+V E       +   +    M     +   +PL   
Sbjct: 836 MLGVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGAA--YTLDVPLDVS 893

Query: 667 GYEAKRY 673
               + +
Sbjct: 894 VGSGETW 900


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/576 (15%), Positives = 165/576 (28%), Gaps = 120/576 (20%)

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             +      L+ +           L  RF   SI S   D    + V+A     E     
Sbjct: 405 HDMSLLAYLLDPTRTNYGYL---YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACES 461

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               RE    L      E  L      +   G  ID + + +      +E  ++ ++I  
Sbjct: 462 AR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELAQVQQEIYD 517

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           +  G   +      L + LF    + ++  ++    T   +L          + IL   +
Sbjct: 518 IA-GETFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYRS 576

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +         L+  ++    R+  T      + TGR S      QN+P           
Sbjct: 577 VAKLVSTYCEGLAVLINDKTKRIHTTFNQMV-TATGRLSSSDPNLQNIP----------- 624

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R+      G   LV AD + IE R+LA ++G++  IKA
Sbjct: 625 -------------VRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKA 671

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F  G+DI+  T A+      + V+ E+R+  K +   + Y               L + +
Sbjct: 672 FVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKAINFGIIYG-----ISDFGLSRDLGITR 726

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                     F  + + + +   M  +  E      + G   EL           +    
Sbjct: 727 GEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQREL---------PDINSRN 777

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +                                                      + +N
Sbjct: 778 FNRRSFAER-----------------------------------------------TAMN 790

Query: 582 TATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638
           T             KL  N V Q               +  +   ++L VHDE+V E  +
Sbjct: 791 TPIQG---TAADIIKLAMNQVEQ------------KLEEGNFTSRLLLQVHDELVLEVVN 835

Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +V  L    M         + L  + + A+ +
Sbjct: 836 SELEAVEELLRTTMQSVVE--LQVHLIVDVHHAENW 869


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/648 (14%), Positives = 167/648 (25%), Gaps = 138/648 (21%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             D T+           ++ D     V HN+     +F +  G  +       T++ A  
Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L               +A       +           +     
Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPA--AASDGQLAFGADDRAEQDALMAQARAVLDLGDA 486

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    K    A          L D E    +L   +   G   D   +  +++  A   +
Sbjct: 487 FTTRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQ 538

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273
           +  ++          +      L+  LF   G+     ++    +               
Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHE 597

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              L+L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P  
Sbjct: 598 LPVLMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392
                                         +R   +   G   L+ AD + IE RV+A +
Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF +GED++ T  ++ F    D V  E R   K M   L             
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------- 738

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GL     SQ +                                      ++   +  
Sbjct: 739 -AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYFE 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV      + E           +                           RR    D
Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626
           +  D      A  ++              +Q  + DI+   M    K          ++L
Sbjct: 802 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLL 852

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDEIV E        V  +    M          PL       K +
Sbjct: 853 QVHDEIVLEIAKGERQQVEEILRHEMANAVELRA--PLDVSVGVGKDW 898


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/653 (13%), Positives = 178/653 (27%), Gaps = 150/653 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           I   + ++ D+ +   D+   +     +   L    V+ V     ++     K +  D+ 
Sbjct: 424 IDSVSLSYKDDILLYIDKDHVTDALELIKPVLGLNYVLKVI----YDVKTLLKVIP-DVE 478

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              +    +++                + S            I    K  + +     T 
Sbjct: 479 IVAFDDIMIMSYILSPS--------VHDHSLQEI--------INYNVKQDVVNVKTAITL 522

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
               +  +      +        +++R+      E+ L  +  ++   G  ID+D++  L
Sbjct: 523 LLLHKLLKKNLFVNQL-----YTIYERV------EKPLIRVLDSMEKVGMLIDIDILKTL 571

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
               +++   L+ +I +L      +   +  L   LF   GI            T   +L
Sbjct: 572 SSTFSEKVSVLENEIYRLAGTEF-NIASSKQLGTVLFDKMGIKKSKKLSSGSYSTDAEVL 630

Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
           +          D IL     +       + L + ++S+ GR+        ++ TGR S  
Sbjct: 631 NDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFYSMI-STATGRLSSS 689

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                              + +R   +A  G KLV AD + 
Sbjct: 690 NPNLQNIP------------------------IRSEEGNAIRRAFVARKGYKLVSADYSQ 725

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A IAG      AF   +DI+  T  + F T                        
Sbjct: 726 IELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIFCT------------------------ 761

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                                            ++ +  +         A +  +  +  
Sbjct: 762 ----------------------QSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEA 799

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                 +   +  +     ++                                       
Sbjct: 800 NAYIDNYFKSYPEIQSYMNNIKIYAKTYGYTRTIF------------------------- 834

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
             R+    D+    +     +    R             Q  S DI+   M +       
Sbjct: 835 -GRKCFIRDINSSNAAARNFS---ERAAINAPL------QGTSADIIKMSMIHLFDKITH 884

Query: 624 --IVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++L VHDE++ E  +     +V  +  +M         +PLK +      +
Sbjct: 885 GSLILQVHDELLFEILEEYVDYAVEVITKVMEGIVK--LSVPLKVDIRIGTNW 935


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 205/697 (29%), Gaps = 156/697 (22%)

Query: 1   MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDL 57
           M    + ID ET    PL +           I L   A    PV + D      +  S L
Sbjct: 32  MKARVIGIDTETTGLDPLTE----------RIRLIQIAAPQHPVIIVDLAALADSELSPL 81

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L + + + V  N  F+  + +   G+  PS  +    + ++               +
Sbjct: 82  KALL-NSSALKVFQNGKFDWQVLEMA-GLR-PSGPFFDVMLASQVLRSG-----LKKDHD 133

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 +    K   +                   + A  L     +   +        L
Sbjct: 134 LQSLTFEFLGIKLDKSLQSSNFAGKLSASQLEYAALDAAVLLKLRARLHSKLRSA---GL 190

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----------- 226
           +  +  E         +   G  +D++    + E +  +++    ++VK           
Sbjct: 191 LETAKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVKAGLKPAPSAQL 250

Query: 227 ---LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                     + R +  +   L     I +   S+  L  I            L+LN   
Sbjct: 251 SLFPDMVETINPRSSVQVLSAL-QALNIPIKSTSKSELIPIARQ----YPVIQLLLNYRK 305

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +         L + +    GR+  + +  GA R+GR+S      QN+PR          
Sbjct: 306 LASLCSNFAEALPKHIHQITGRIHPSYRQCGA-RSGRFSCKQPNLQNVPRNCT------- 357

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+C IA  G +++ AD + IE R++A I+G+   + A+
Sbjct: 358 ------------------VKGMRACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAY 399

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GED++  T +      +++V+ E R I K +   L Y  GA   +  A          
Sbjct: 400 VKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYAEEK------- 452

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              L     +  +K +   + GV +   
Sbjct: 453 -------------------------------YDVLLTLEEAKEFRKRFFQAYSGVKRWHD 481

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +                  V ++ ++     +R      P   RL              
Sbjct: 482 SIRRTV-------------YVKDIKQIRTIGGRRRRWAKKP---RLSE------------ 513

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                         L  + VQ  S D+L   +    K     G  ++  VHDEI+ E P 
Sbjct: 514 --------------LLNHPVQGTSADMLKVAIARLFKLLPKTGAKLIAVVHDEILLECPQ 559

Query: 639 TPYFSVG-TLCSLMTKNPSWAK-GLPLKAEGYEAKRY 673
           T        L  +M +        +P++ E   A  +
Sbjct: 560 TTLKRTSCILKKVMVEAGELYLQQVPVEVEVKIASSW 596


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 130/472 (27%), Gaps = 73/472 (15%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLF 75
             A +   A A +           +            + + +   L D  +  V H+  F
Sbjct: 80  MSAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAVMGPLLADPELPKVGHDVKF 139

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLA-LNFSEHLTKMEEGKALI 132
             ++  +   I +    +  T + +          L       L            K   
Sbjct: 140 CEVILLRHR-IGLVGVSF-DTMLASYLLDPEGKNQLHELAERELGAKMQTLDEVAPKRRG 197

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------D 182
                           RA           Y     +    L  RL P             
Sbjct: 198 Q-------------AQRALDEIELGEASSYGAAFADVALSLTDRLRPRLRVEKLEDLLVQ 244

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  +   +   G  +D   + +L   +  E   L++   ++    I +      L 
Sbjct: 245 IELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDI-NLASPKQLE 303

Query: 243 MYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             LF    +           T   +L   +       ++L   A +      ++ L   V
Sbjct: 304 AVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLV 363

Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +   GR+        A  TGR S      QN+P                           
Sbjct: 364 NPGTGRIHTRWGQAVA-ATGRLSSQDPNLQNIP------------------------IRT 398

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G  +V AD + IE RVLA ++ +   + AF  G+D++V T  + F 
Sbjct: 399 ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFG 458

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
                V+ E R   K +   + Y  G            LD+ +        +
Sbjct: 459 VDQAGVTAEMRRRSKTINFGVIYGMGESAL-----AKRLDISRAEAARFIDA 505


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 92/678 (13%), Positives = 192/678 (28%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +N+   R + +K LGID    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYNAKNPRTILRK-LGIDFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     N +       E   +D +    L+       
Sbjct: 440 NREDEFLK-----------------IKEVNIMPNLYKVLEEKIKDQDMEELLY------- 475

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 476 KVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEKF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R+  K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E      ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELERIKALVKKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 97/648 (14%), Positives = 167/648 (25%), Gaps = 138/648 (21%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             D T+           ++ D     V HN+     +F +  G  +       T++ A  
Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L               +A       +           +     
Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPA--AASDGQLAFGADDRAEQDALMAQARAVLDLGDA 486

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    K    A          L D E    +L   +   G   D   +  +++  A   +
Sbjct: 487 FTTRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQ 538

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273
           +  ++          +      L+  LF   G+     ++    +               
Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHE 597

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              L+L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P  
Sbjct: 598 LPVLMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392
                                         +R   +   G   L+ AD + IE RV+A +
Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF +GED++ T  ++ F    D V  E R   K M   L             
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGL------------- 738

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GL     SQ +                                      ++   +  
Sbjct: 739 -AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYFE 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV      + E           +                           RR    D
Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626
           +  D      A  ++              +Q  + DI+   M    K          ++L
Sbjct: 802 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLL 852

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDEIV E        V  +    M          PL       K +
Sbjct: 853 QVHDEIVLEIAKGERKQVEEILRHEMANAVELRA--PLDVSVGVGKDW 898


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 169/693 (24%), Gaps = 155/693 (22%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPSDL---------LQYLR 62
           G+  +   A       A +                       P  +            + 
Sbjct: 377 GLHLHRGDAGAIGLGIAVEPGRAVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALME 436

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
           D  V  + H+         + LG +I         +++           L          
Sbjct: 437 DAGVRKIVHDLKGTAKAAGR-LGFEIAGA--DDVGLMSYALESGLTGHGLPELAARH--- 490

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L                       A +       +  +A   L+  L P
Sbjct: 491 -----------LGNAAPDPDALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAP 539

Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +           E  +  +   +   G RID  ++ +L         +L+ +I +L  
Sbjct: 540 RLEGTPTQAVYEELELPMVPVLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGG 599

Query: 230 GIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSN--ITQLAKDLILNRLA 283
           G  +       +   LF   G+            T  +IL         L   L+  R  
Sbjct: 600 GPFQ-IGSPKQIGDVLFGRLGLPGGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRT 658

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S   +    + L  A         T     A+ TGR S       N+P            
Sbjct: 659 SKLKST-YADALLSAADRGTDRVHTTFSLAATTTGRLSSSDPGLHNIP------------ 705

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R+  +A+ G +++ AD + +E R+LA IA      +AFA
Sbjct: 706 ------------IRTEEGRRIRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFA 753

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G DI+  T +  F  P+  V  E R   K +   + Y               L + +  
Sbjct: 754 EGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYG-----ISAFGLADRLGIGRQE 808

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   FE +     +    +    E      L G  C          + G+      
Sbjct: 809 AAEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCH---------YPGITSGNVS 859

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
              G                A++ R  M R +  +     S+R L               
Sbjct: 860 ERMGVERQAVNAPIQGTA--ADIIRRAMIRMEGALADSGLSARML--------------- 902

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YF 642
                                                          E+V E  +     
Sbjct: 903 -------------------------------LQVHD-----------ELVFEVAEAECAD 920

Query: 643 SVGTLCSLM--TKNPSWAKGLPLKAEGYEAKRY 673
           +   +  +M     P     +PL  E   A+ +
Sbjct: 921 TARVVSDVMAGAAAPDIDLAVPLVVEARSAENW 953


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/667 (13%), Positives = 181/667 (27%), Gaps = 143/667 (21%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85
              +   A    D     +D  E           +L D       H++           G
Sbjct: 372 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALAG-RG 430

Query: 86  IDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141
            ++       T + +             +A    LN +    +    +A++      S +
Sbjct: 431 WEVAGLTC-DTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAMLDFGNDSSAE 489

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S           +A  +       + E        L  L D E  +     ++   G  +
Sbjct: 490 SM---------ERAVAVTKLADVMEKEVEARGGSEL--LHDVEMGVQRCLISMERVGIAV 538

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259
           D D++  L+    +   +      +   G   +      L+  LF    +     ++   
Sbjct: 539 DTDILEGLRSEFDERVTRAQGAAWEAA-GEKINLSSPKQLQGVLFEKLDMPKTRRTKSGY 597

Query: 260 -----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L  +   +    LA  L+ +R A        ++ L + +  DGR+  T     A
Sbjct: 598 TTDADALAGLYEKTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIA 654

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                                +R   +   G 
Sbjct: 655 -ATGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVVGEGY 689

Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K
Sbjct: 690 ESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIK 749

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M                    GL                                   +
Sbjct: 750 AMNYG--------------LAYGLS------------------------------AYGLS 765

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K+     + +   + ++   V +  +++ +           +               
Sbjct: 766 NQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVDQARRQGYTETLL--------------- 810

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+            +               +Q  + D++   
Sbjct: 811 -----------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADLIKLA 850

Query: 614 MK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M        + G    ++L VHDE++ E        V  +    M         +PL   
Sbjct: 851 MVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVS 908

Query: 667 GYEAKRY 673
               + +
Sbjct: 909 IGVGRSW 915


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 91/625 (14%), Positives = 165/625 (26%), Gaps = 137/625 (21%)

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSEH 121
              + HN+     +F +  G  +       T++ A           L       L+    
Sbjct: 379 RPKILHNAKGAMRVFAEH-GWSVEGVTM-DTALAAYLVKPGRRSFDLDALSLEYLHRELA 436

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                +G   +A       ++          +   + F    +    A          L 
Sbjct: 437 PAAEADG--QLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADL--------LR 486

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E     L   +   G   D   +  ++++ A   ++  ++          +      L
Sbjct: 487 DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQL 545

Query: 242 RMYLFLITGIDLVDMSEG---TLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLS 296
           +  LF    +     ++    T    L+            ++L     +   +  +  L 
Sbjct: 546 QEVLFGELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLI 604

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + +++DGR+  T     A  TGR S      QN+P                         
Sbjct: 605 KTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP------------------------V 639

Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  ++
Sbjct: 640 RTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAASQ 699

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F      V  E R   K M   L                GL     SQ +   +     
Sbjct: 700 VFAVEPTAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIEAA---- 741

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                         +  A+  +  GV    +   +         
Sbjct: 742 --------------------------EARALMDAYFERFGGVRDYLRRAVDEARATGYTA 775

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                         RR    D+  D            R      
Sbjct: 776 TLF--------------------------GRRRYLPDLNSDNR---------QRREAAER 800

Query: 596 KLTENIVQAISRDILCEGMKNATKNG------YDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                 +Q  + DI+   M N             ++L VHDEIV E       +   L  
Sbjct: 801 MALNAPIQGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERATAEELVR 860

Query: 650 L-MTKNPSWAKGLPLKAEGYEAKRY 673
             M         +PL         +
Sbjct: 861 REMANAVQ--LRVPLGVSVGSGPDW 883


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 99/757 (13%), Positives = 184/757 (24%), Gaps = 162/757 (21%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLWDR--TEQSAMPSD 56
              D E      L K           I   +        +        D    + + +   
Sbjct: 707  ACDTE-VVDLDLKKQSP---IGHGRIICFSVYCGPDIDFGTGSRLWVDTMGEQGNEILEV 762

Query: 57   LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLK 110
               Y   E++  V HN  F+R +F     ID+       T  +AR            SL+
Sbjct: 763  FRPYFESESIYKVWHNYGFDRHIFYNH-NIDVKGFG-GDTLHMARLWDAARNGRGGYSLE 820

Query: 111  NACLAL--NFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDV 167
                 L  N      K   GK  I        D   P       H +  + + EY   D 
Sbjct: 821  GLSKELLDNHKT-SIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDA 879

Query: 168  EATRELFKRLIPLSD--------GERDLW--------LLDQTINDRGYRIDLDLVLKLQE 211
            E T  L + L                D +         L   +  RG ++D++ +  ++ 
Sbjct: 880  ELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEG 939

Query: 212  LIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---------LITGIDL---- 253
            +  ++ +   +   +       +    +      ++  LF             ++     
Sbjct: 940  VATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEMPLEREFET 999

Query: 254  ----------VDMSEGTLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTL 295
                          +     +LS   +           A D    R  +   +  K   +
Sbjct: 1000 ENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKI 1059

Query: 296  SEAVSSDGRLRGTLQFYGA-------------SRTGRWSGCVFQPQNL------PRQERS 336
                      +   +  G              S     S  +   Q L           +
Sbjct: 1060 FNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPLQKLCDSNHRVHTSVN 1119

Query: 337  EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                T  + +          L      +R       G  LVVAD   +E R+LA I    
Sbjct: 1120 VNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELRLLAHITNCR 1179

Query: 397  WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              I AF  G D +  T    +    + V +                        +    G
Sbjct: 1180 SMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDV---------------------LLEWDG 1218

Query: 457  LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                       S        +  +  +         +    +     +     W +    
Sbjct: 1219 DGEPPKPLLKDSFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPE 1278

Query: 517  VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
            VL   +   +                                       R  +  D+   
Sbjct: 1279 VLLWQRKTIQIA--------------------------NTHKWTRTLMGRYRMLPDIDNP 1312

Query: 577  CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVLTVHD 630
               +   +    R            +Q  + DI+ + M          + G+ +++ +HD
Sbjct: 1313 AKGMKGHS---ERASI------NTPLQGGAADIVMKAMLMIEEDKRLKELGFQLIMQIHD 1363

Query: 631  EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
            E++ E P+        +   LM+         PL  E
Sbjct: 1364 ELILEGPEQHAKEAREIVMRLMSNP----LNTPLLVE 1396


>gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
 gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
          Length = 1126

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/606 (12%), Positives = 156/606 (25%), Gaps = 137/606 (22%)

Query: 88   IPSKRWICTSVLARTNGLPSSLKNACLAL-------NFSEHLTKMEEGKALIARFCKGSI 140
            +       T + A      ++  +    L       ++ +                + ++
Sbjct: 634  VAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKAL 693

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                        +QA  ++        +    +          E  L  +   +   G  
Sbjct: 694  SEMLACAKAQRVLQAPLMYALMLDESYDVYCGI----------ELPLICVLLDMERTGLH 743

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--DMSE 258
            +D D++ +    I +E   +   +     G   +      L   LF +  +       ++
Sbjct: 744  VDTDILHEQSMAINREINHMLATLH-TDIGETINIDSPMQLSHVLFDVWQLPTKGLKKTK 802

Query: 259  ----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 T    L   +       LIL+    +      L+ L   +  DGR+  T     A
Sbjct: 803  RGYFSTNAKTLETLSKQDDRVQLILDYRERAKLKSTYLDALPAQIKPDGRIHTTFNQTVA 862

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
              TGR S      QN+P                                VR     ++  
Sbjct: 863  -ATGRLSSSDPNLQNIP------------------------TRSQLGHRVRKAFTVADDS 897

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
              +  D + IE R+LA ++ +   I AF +G D +  T ++ F    D V+ + R+    
Sbjct: 898  VFLTCDYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRIFGIEQDAVTPQLRSRA-- 955

Query: 435  MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                                                      +A +  +    Q    A 
Sbjct: 956  ------------------------------------------KAVNFGIVYGQQAFGLAS 973

Query: 495  KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              K+     + +   +   +  V +   +                 +R          + 
Sbjct: 974  SLKISRATAKEMIDKYFEVYPCVREFLDESVAFARAHGYVPTMYGRKRHIEHINASNFQL 1033

Query: 555  KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                                 + + +                   + +Q  + DI+   M
Sbjct: 1034 -----------------RSFAERTAM------------------NHPMQGSAADIIKLAM 1058

Query: 615  KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEG 667
                K          +VL +HDE+  E       ++  L    M    S    +PL A+ 
Sbjct: 1059 IEVEKRLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHVVS--LRVPLIADI 1116

Query: 668  YEAKRY 673
              A  +
Sbjct: 1117 SYASNW 1122


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 91/653 (13%), Positives = 180/653 (27%), Gaps = 117/653 (17%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
               E       A    D  VK     E       L + + DE V  + ++   + I+  
Sbjct: 331 GKIYEDVKPIYLAVKVKDSEVKFISYEEIDF--DFLKKIMEDEKVEKLGYSLKEDIIILM 388

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCK 137
             LGIDI +       +         S  +                +   GK    +   
Sbjct: 389 -DLGIDIKNYS-HDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYA 446

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
                  +   +        ++     +  +   E    L    D E  L  +  ++   
Sbjct: 447 DLDKDDLF---KYFAFVLNTIYRLEDLQKEKIDEEEMTSLY--QDMELPLVEVLASMEYV 501

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G   D  ++ ++ + I ++ K L+E+I         +      L + LF      ++  +
Sbjct: 502 GINTDEAVLDEIDKQIIEKLKTLEEEIYDEAGEKF-NINSPKQLGVILFDKMDFPVIKKT 560

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L          D IL+    S      ++ L   ++   +   +      
Sbjct: 561 KTGYSTSADVLEKLRGKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIHSRFMQTV 620

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P                                +R   +AS G 
Sbjct: 621 TATGRISSTDPNLQNIP------------------------IKTEEGRLIRKAFLASEGG 656

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV AD + IE RVLA ++ +   + AF +G DI+  T ++ F+   D+V   QR   K 
Sbjct: 657 VLVDADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKA 716

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y               L++ + +      +    +   + +         +   
Sbjct: 717 VNFGIVYG-----ISDYGLSQNLNIPRKAAKEYIDNYLGHFVGIKDYMAEEIKNGKDKGY 771

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            + +            R     +     ++      +        +              
Sbjct: 772 VETIFKR---------RRYIPELNAKNFNIRSFGERIALNTPIQGSAADII--------- 813

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                       ++    V  +    N  +                I+Q           
Sbjct: 814 ------------KIAMVKVYNELKKRNLKSKL--------------IIQ----------- 836

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666
                        +HDE+V +T +     V  L   LM  +      + L  +
Sbjct: 837 -------------IHDELVVDTAEDEIEEVKELMKDLMENSVD--LNVKLSVD 874


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/651 (12%), Positives = 183/651 (28%), Gaps = 120/651 (18%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +   A A +   V + D T        + +++ DET   +  ++    I  K+     +
Sbjct: 324 DVIGVAIASERG-VTIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRH---QL 377

Query: 89  PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
             + +    V      L    SL +      +     +   GK    +  + ++      
Sbjct: 378 ALRGYEDLLVAGYLLNLSGGTSLSSIAAHFTYPLEEDETVYGKGAKIKVPEENVFHAHLA 437

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    ++      K + +    L++ L      E+ L  +   +   G  ++++ +
Sbjct: 438 EKAYAIYTLFERVVSELKENEQTE--LYEAL------EKPLVSVLAEMEWAGIHVNVETL 489

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
             ++  + +    L+  I +L      +      L + LF    +  V  ++    T   
Sbjct: 490 QHMETDLRERLNALEITIHELAGEPF-NINSPKQLGVVLFEKLSLPPVKKTKTGYSTAAD 548

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +L          + I++           +  L + V  DG++         ++TGR S  
Sbjct: 549 VLEKLAPLHPIIEKIMHYRELGKLQSTYVEGLQKVVKDDGKIHTRYTQT-LTQTGRLSSV 607

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382
               QN+P                                +R    A   G  L   D +
Sbjct: 608 NPNLQNIP------------------------IRLEEGRRIRKAFTASEPGWVLYAVDYS 643

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++ ++  + AF + EDI+ +T A  F    ++V+   R   K +   + Y 
Sbjct: 644 QIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVNFGIIYG 703

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L + +        + FE +   ++      ++  E    + ++   
Sbjct: 704 -----ISDYGLSQNLGITRKEAQTFIDTYFEQFPGVKTFMDAAIERAREHGFVETMLKR- 757

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +     +L                     + + ++          L
Sbjct: 758 --------RRNIPDIHSRNFNLRGFAERTAINTPIQGTAADI-IKKAMIDVDHALNASKL 808

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
            S   L   D                                         M+   K   
Sbjct: 809 QSKLLLQVHDELIFEGPTEE-------------------------------MEALEK--- 834

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +V+E               M +  +    +PL+A+G     +
Sbjct: 835 ---------LVTEA--------------MEQTVT--LDVPLRADGAVGTTW 860


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/656 (14%), Positives = 175/656 (26%), Gaps = 149/656 (22%)

Query: 33  CAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--D 87
            A A+  + V     +      A+ + L    R           +F+    KK L +   
Sbjct: 346 IALAYGKDQVYSIACSMDTDMDALFAQLSDVARSAGRFV-----MFD---LKKYLPVLGA 397

Query: 88  IPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           +  K     +V A          + ++     L         E  K+             
Sbjct: 398 VCQKNCFDATVAAYLLNPLKNDYTYEDVAREQLGLMMDDKADEWTKSCYE---------- 447

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
               T     +         K   E    LF       + E  L      +   G RI+ 
Sbjct: 448 --AYTAYAASE-----KLMEKLKEEQMDRLF------LEIEMPLVFTLFDMEQAGVRIEA 494

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
           + + K  E + ++  +L+ +I ++  G   +      L + LF    +     ++    T
Sbjct: 495 EELKKYGEQLGEQIVQLESEIYEMA-GENFNINSPKQLGVILFEKLQMPHAKKTKTGYST 553

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          D IL     +       + L+  +  DGR+ GT      + TGR 
Sbjct: 554 AADVLEKLAPEFPIVDKILEYRQLTKLKSTYADGLANYIGPDGRIHGTFNQT-ITATGRI 612

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                                +R   +   G   + AD
Sbjct: 613 SSTEPNLQNIP------------------------VRMELGRLIRKVFVPQEGYVFIDAD 648

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA  +G+   I+A+   +DI+  T ++ F TP D+V+  QR   K +   + 
Sbjct: 649 YSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFGIV 708

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y        +      L + +   +    S FE +   +           E      L G
Sbjct: 709 YG-----ISSFGLSQDLSITRKEASQYIESYFETYPGIKKFLDDSVTHAKEEGYAVTLFG 763

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               +           +             V                             
Sbjct: 764 RRRPI---------PELKSSNFMQRNFGERVAMNAPIQGTAADI---------------- 798

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATK 619
                 ++    V  +                                 +   M      
Sbjct: 799 -----MKIAMIGVNRELKEKR----------------------------MKSRMILQVHD 825

Query: 620 NGYDIVLTVH-DEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
               +++  H DEI          +V  +    M    S    +PL A+    K +
Sbjct: 826 E---LLIETHPDEI---------ETVKEILKRQMETAAS--LDVPLIADMQVGKNW 867


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 178/630 (28%), Gaps = 148/630 (23%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS-SL 109
           P   L+ LR E V+   H +  +           G+++         ++A      +   
Sbjct: 372 PERALELLRSEEVL---HAA--DAKALAVYAQRCGLEVRPG--DDPLLMAYVLDPSAADP 424

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +                                           +  +       +   A
Sbjct: 425 ETLTRRYG--------------------TPAWGATAVARAVATAELSRTLRP---KLAGA 461

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            R L++      + ER +  +   +   G R+D   +    E +A++   L+ ++ +L  
Sbjct: 462 LRRLYE------EIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAG 515

Query: 230 GIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
               +      L   LF       G         T  S L           LIL     +
Sbjct: 516 NPNLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVSALEPLKDAHPVVPLILEYRELA 575

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 L+ L   ++   GRL  T     A+ TGR S      QN+P             
Sbjct: 576 KLKSTYLDPLPRLINPHTGRLHTTFNQT-ATATGRLSSANPNLQNIP------------- 621

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R   +A  G  L+VAD + IE R+LA I GE+  ++ F  
Sbjct: 622 -----------VRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRR 670

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GEDI+  T A+ F  P + V+ E R + KV+   + Y   A           L +     
Sbjct: 671 GEDIHRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRL-----ARELSIPYAEA 725

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
           +    S FE + +  ++         +    + L G    +           +    ++ 
Sbjct: 726 DAFIRSYFEGYPKVRAYIDETLAFARDKGYVETLFGRRRPI---------PDIRSSNRNA 776

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E              +                         +L    +           
Sbjct: 777 REYAERTAYNMPIQGTQADIV---------------------KLAMVRL----------- 804

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS-ETPDTPYFS 643
             L R + +G KL                           +L VHDE+V           
Sbjct: 805 --LPRLKAHGAKL---------------------------LLQVHDELVLEAPEGAAEAV 835

Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              + ++M     +A  +PL AE    + +
Sbjct: 836 AAEVKAVMEGA--FAMRVPLVAEVGRGRNW 863


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/610 (13%), Positives = 148/610 (24%), Gaps = 159/610 (26%)

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           D+  +R    +V             A                             +    
Sbjct: 445 DVDHRRVFDVAVAGYLLDS----DAAS-------------------------FSVADLVS 475

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTIND 196
                 +            D      L   L    +           E  L  +   +  
Sbjct: 476 REMDMSLPEPTDELPQAALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMER 535

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253
            G   D   + +    +  E   +   I    D    +      L   LF + G+     
Sbjct: 536 TGLHADAGRLAEQSRELGSEIDCMVATIKADADEDF-NMDSPQQLSHVLFDVWGLPTFGL 594

Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T    L           +IL+    +      L+ L   +  DGR+  TL 
Sbjct: 595 KRTKKGFYSTNAKTLEDLAQQDGRVRMILDYRERAKIKSTYLDALPADIRRDGRIHTTLN 654

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                VR+    
Sbjct: 655 QTVA-ATGRLSSSAPNLQNIP------------------------TRSELGHRVRTAFTV 689

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G   +  D + IE R+LA ++ +   + AF +G D +  T A+ F  P+++V+ + R+
Sbjct: 690 PEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAARVFGVPVEEVTPQLRS 749

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
                                                         +A +  +    Q  
Sbjct: 750 RA--------------------------------------------KAVNFGIVYGQQAF 765

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A   ++     + +   +   + GV        +              +R        
Sbjct: 766 GLASSLRIGRAEAQEMIDRYFEAYPGVRAYLDQSVDFARKRGYAVTMYGRKR-------- 817

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                   HI   ++R         + + +                   + +Q  + DI+
Sbjct: 818 --------HIRDINARNFQL-RSFAERTAM------------------NHPMQGTAADII 850

Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
              M    +          +VL +HDE+  E P      +  L    M         +PL
Sbjct: 851 KLAMVRVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVCE--LRVPL 908

Query: 664 KAEGYEAKRY 673
            A+      +
Sbjct: 909 LADVSYGANW 918


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 177/597 (29%), Gaps = 133/597 (22%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +  E + L        +D       +  
Sbjct: 414 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDMEGVDD---QAVQTA 470

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            ++A  +       D E  R     L+   D E  +  +   +   G  +DL L+ +LQ 
Sbjct: 471 ILRARAVADLAEALDAELARIDSTALLA--DMELPVQRVLADMERAGIAVDLRLLAELQS 528

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSI 264
             A + +    +      G   +      L++ LF   G+     ++         ++ +
Sbjct: 529 QFADQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAVQGL 587

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
              +    L    +L     +   +  ++ L  +V++DGR+  T     A  TGR S   
Sbjct: 588 FEKTGHPFLQH--LLAHRDVTRLKVT-VDGLLNSVAADGRIHTTFNQTIA-ATGRLSSTE 643

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383
              QN+P                            A   +R   +   G  +L+ AD + 
Sbjct: 644 PNLQNIP------------------------IRTDAGRQIRDAFVVGAGYSELMTADYSQ 679

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M        
Sbjct: 680 IEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG----- 734

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL                                   + + K+     
Sbjct: 735 ---------LAYGLS------------------------------AYGLSTQLKISTEEA 755

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           ++    + A+  GV      + E           +                         
Sbjct: 756 KVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVL------------------------- 790

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RR    ++               R            +Q  + DI+   M    K    
Sbjct: 791 -GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIEVDKALTE 840

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                 ++L VHDE++ E        V  L    M         +PL+      + +
Sbjct: 841 AGLASRMLLQVHDELLFEIAPGERERVEALVREKMGGAYP--LDVPLEVSVGFGRSW 895


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/666 (14%), Positives = 188/666 (28%), Gaps = 155/666 (23%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFER 77
           +G++   EQ  I+    A D+         E+     + +   L  ++V+ V     ++ 
Sbjct: 324 LGLYIEVEQGFISTIFAACDETRSFTVSSPEKVQKFVAAVTPILHSDSVLKVV----YDA 379

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134
               +        + +    +++ +           +          +  +  G  LI  
Sbjct: 380 KSMMQFFP---ELRAFDDIMIMSYSLDTGHHDHGFDSMSQR--HLGQIFGITNGCILIRL 434

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                             ++       Y          ++  L      ER L  +   +
Sbjct: 435 HRV--------------IMRKLFSAKLY---------TVYYTL------ERPLVPVIYEL 465

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----G 250
              G +ID +L+ +L +  +     L+E+I  L      +   +  L   LF        
Sbjct: 466 EKTGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCKF-NIASSQQLGKVLFEHMRIGGA 524

Query: 251 IDLVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGT 308
             +   S  T   +L+   +      D IL     +       + L   V ++ GR+   
Sbjct: 525 KKMPSGSYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTK 584

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                A+ TGR S      QN+P                              + +RS  
Sbjct: 585 YSMT-ATATGRLSSSNPNLQNIP------------------------IRSKDGEKIRSAF 619

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           IA  G KL+ AD + +E ++LA IA      +AFA G DI+V T  + F     ++  E 
Sbjct: 620 IAEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFG-EYYEIDYEL 678

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y  G     +      + + +   +      F+ + + + +    +  
Sbjct: 679 RRRAKSINFGIIYGMG-----SYGLARNIGISRREASEYVEQYFQYYPEIKRYMETTKAY 733

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +        G  C +          G+    + L+                       
Sbjct: 734 AKKHGYTITAFGRKCFIE---------GINSPKRALSSVAERAAINAPIQGTAADIVKKA 784

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           +V  +                                               + Q     
Sbjct: 785 MVRLQD---------------------------------------------RLTQGT--- 796

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
                          ++L VHDE++ E P+    SV  L   +M     +   LPL    
Sbjct: 797 ---------------MLLQVHDELLVEVPEEHVLSVARLMKEVMESAVVF--SLPLDVNI 839

Query: 668 YEAKRY 673
                +
Sbjct: 840 SVGDNW 845


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/624 (13%), Positives = 180/624 (28%), Gaps = 135/624 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
            ++ ++  +     V +N      +  +  GI + + +     ++A       + +N   
Sbjct: 390 KEIQEFFDNYNGEIVTYNLK---NILNR--GISVKNCKLD--MMIAYHLISSQTKENV-- 440

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFGEYCKRDVEAT 170
                E   +   G  L     K   + P      +  +    +   L   Y     E  
Sbjct: 441 -----ELPIEHLTGIELDNYADKFGKEKPENISAKEYGKYLCQRTMGLLECYDILKEELE 495

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                 +  L++ E  L  +  ++  +G +ID +     ++ +    +KL E I +    
Sbjct: 496 DR--NLMKVLNEIEMPLIEILSSMEIKGIKIDPEYFSNYEKELGDLIEKLQEKIYEEAGE 553

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQ-LAKDLILNRLASSG 286
              +      L   LF    +  V  ++    T + +L    +        IL     + 
Sbjct: 554 EF-NINSPKQLAEILFFKLNLPPVKKTKTGLSTDEEVLEKLKVDGAEIAKAILEYRKLAK 612

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++ + +      R+  T    G + TGR S      QN+P               
Sbjct: 613 LKNTYVDAIPKLRDEKDRVHTTFNQIG-TTTGRLSSSDPNLQNIP--------------- 656

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   +A     L+  D + IE RVLA ++G++   +A+ N  
Sbjct: 657 ---------VKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLREAYQNSM 707

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++  T  K F                                           + S   
Sbjct: 708 DLHSLTARKIF-------------------------------------------ELSDEE 724

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
           + +       +  +  +         A +  +           +  ++  V    K++ E
Sbjct: 725 EVSREERIIAKTINFSIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFEKEIVE 784

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                         RR+ +      +  K                             SQ
Sbjct: 785 FTEKHGYTETFFGRRRLIDGINSKNKNIK-----------------------------SQ 815

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK-----NGYDIVLTVHDEIVSETPDTPY 641
             R          +++Q  + +I+ + M    K     +G  ++L VHDE++ E      
Sbjct: 816 AERMA------VNSVIQGTAAEIIKKVMIEIYKYIKDRDGISLLLQVHDELIFEIEKEKL 869

Query: 642 FSVGT-LCSLMTKNPSWAKGLPLK 664
                 +  +M ++  +   +PL+
Sbjct: 870 EMYREDIEKIMRESVKF-DSVPLE 892


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/610 (14%), Positives = 168/610 (27%), Gaps = 131/610 (21%)

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLT-KMEEGKALIA 133
            +F K LG +     +    + A         ++          ++    +   GK    
Sbjct: 384 KVFLKKLGTEFNHVTY-DLLLAAYLIQSSIGKQDFTFIAQQFQITDIQYDEEVYGKGAKK 442

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                  D   +   +A     + +     +     T      L+   D E  L  +   
Sbjct: 443 ALPLIPSDYEGHIAKKA-----YIIHKLMQQTLDVLTERNQLSLLN--DVELPLSDVLAD 495

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +  +G  +DL  +    + ++    KL  +I+ L      +      L   LF   G+  
Sbjct: 496 MEYQGLTVDLKELENQTKDMSLRIDKLRTEILLLAGVDF-NVDSPKQLGDVLFDTLGLPN 554

Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              ++    T   +L++        +LI+     +      L  + E+V  D R+     
Sbjct: 555 GKKTKTGYSTGIEVLNNLIDHHPIINLIIEYRQLTKLYSTYLIGIKESVFEDNRVHTIYN 614

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   I 
Sbjct: 615 QA-LTLTGRLSSLEPNLQNIP------------------------IRTEEGRQIRKLFIP 649

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                 V AD + IE RVLA +A      +AF   +DI+  T  K F+   D V  EQR 
Sbjct: 650 EPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQKVFHV--DTVDSEQRR 707

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   +                G+     S+++                        
Sbjct: 708 RAKAVNFGII--------------YGIGPWSLSEDI------------------------ 729

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                  +     E     +   +  +     ++ E           ++           
Sbjct: 730 ------GVTVKEAENFISRYLEVYPEIKDYMTNIVEFAKTHGYVETLLN----------- 772

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR    ++      L     +               +Q  + DI+
Sbjct: 773 ---------------RRRYIPELSSKVFNLREFGKRTS---------LNAPIQGTAADII 808

Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
              M +        K    ++L VHDE++ E        +  +  ++M K   +  G+ L
Sbjct: 809 KLAMIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIPNIMEKA--FNLGVRL 866

Query: 664 KAEGYEAKRY 673
           K        +
Sbjct: 867 KTSCDVGNNW 876


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/699 (17%), Positives = 201/699 (28%), Gaps = 176/699 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQY 60
           L ID ET    P              + L   +    PV + D      +P     L + 
Sbjct: 99  LAIDTETTGLDP----------HSDRLRLIQISAPGIPVLVIDCAAF--LPDGFACLKEL 146

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSSLKNAC-L 114
           L   +   + HN+ F+       +GI I       T + A+          + L      
Sbjct: 147 LNTPS-EKIFHNARFDLQFL---MGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADH 202

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L      T+         +       S          + AW L   Y   +    R   
Sbjct: 203 YLGIKLDKTE---------QTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLLAR--- 250

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR- 233
             L   +  E             G  +DL+   +L+    ++     E +   +      
Sbjct: 251 HGLGRTASIEFACVSAIARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTYSGTPSCQ 310

Query: 234 ------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
                       +      +   L    GI +   S       L+  +   L + L   R
Sbjct: 311 LTLWGGEEALDVNFESNPYVLKLL-NRYGIPVTSTSR----RSLAPYHSQPLVQALTEYR 365

Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
             S   +   L+ +   +     RL       GA  +GR S      Q +PR+       
Sbjct: 366 RHSKSLSS-FLHPIPAQIHPVTHRLHPKYMQIGA-WSGRMSCYNPNIQQIPREAD----- 418

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                   RSC  A +G+KL++AD + IE RV A I+G+     
Sbjct: 419 -----------------------FRSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKS 455

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A   GED++  T +   + P+ +V+K QR   K +   L +  GA+  K  A        
Sbjct: 456 ACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYA-------- 507

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                           +   ++     E  + A+   ++G+   
Sbjct: 508 ------------------------------GQSYGVEMTLEEAEQFRSAFFQSYRGINWW 537

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             DL E                               +     + R+ ++S         
Sbjct: 538 HHDLRE----------------------------SHPLEGRTLTGRKFLFS--------- 560

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSET 636
                      T    L    VQ  + DIL   +         +   IV  VHDEI+ E 
Sbjct: 561 ---------PNTGLADLANTPVQGTAADILKHALGLLASRIRGSDKKIVAIVHDEILMEV 611

Query: 637 P-DTPYFSVGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
           P +    +V  L + M +   +    +P +A+   A  +
Sbjct: 612 PVEEADDTVVLLKTAMEEAAQAILPDVPCEADAKAADSW 650


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/667 (13%), Positives = 181/667 (27%), Gaps = 143/667 (21%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85
              +   A    D     +D  E           +L D       H++           G
Sbjct: 344 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALAG-RG 402

Query: 86  IDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141
            ++       T + +             +A    LN +    +    +A++      S +
Sbjct: 403 WEVAGLTC-DTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAMLDFGNDSSAE 461

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S           +A  +       + E        L  L D E  +     ++   G  +
Sbjct: 462 SM---------ERAVAVTKLADVMEKEVEARGGSEL--LHDVEMGVQRCLISMERVGIAV 510

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259
           D D++  L+    +   +      +   G   +      L+  LF    +     ++   
Sbjct: 511 DTDILEGLRSEFDERVTRAQGAAWEAA-GEKINLSSPKQLQGVLFEKLDMPKTRRTKSGY 569

Query: 260 -----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L  +   +    LA  L+ +R A        ++ L + +  DGR+  T     A
Sbjct: 570 TTDADALAGLYEKTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIA 626

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                                +R   +   G 
Sbjct: 627 -ATGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVVGEGY 661

Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K
Sbjct: 662 ESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIK 721

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M                    GL                                   +
Sbjct: 722 AMNYG--------------LAYGLS------------------------------AYGLS 737

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K+     + +   + ++   V +  +++ +           +               
Sbjct: 738 NQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVDQARRQGYTETLL--------------- 782

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+            +               +Q  + D++   
Sbjct: 783 -----------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADLIKLA 822

Query: 614 MK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M        + G    ++L VHDE++ E        V  +    M         +PL   
Sbjct: 823 MVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVS 880

Query: 667 GYEAKRY 673
               + +
Sbjct: 881 IGVGRSW 887


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/590 (14%), Positives = 160/590 (27%), Gaps = 121/590 (20%)

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           R   T V A       S                + +    +A       +    D     
Sbjct: 436 RIFDTVVAAYLLDSDRS----------EFDEAYLADTYLQMALPAACGAEGAGEDAPAPA 485

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              A               RE    +      E  L  +   +   G  +D D +  L E
Sbjct: 486 ARTAALTLALVAPLRECMARENAANVFDGI--EMPLVPVLAKMERAGMLVDPDRLHSLSE 543

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--DMSE----GTLKSIL 265
            +A +  +++  I  L      +      L   LF + G+       ++     T   +L
Sbjct: 544 GLATQITEVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVL 603

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           S          LIL+    S      L+TL      DGR+  T      + TGR S    
Sbjct: 604 SDLARDHEIVRLILDWREKSKIKSTYLDTLGPLRRGDGRVHTTYNQT-ITATGRLSSSDP 662

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                V++   A  G   +  D + IE
Sbjct: 663 NLQNIP------------------------TRSELGRTVKTAFSAGEGSVFLAVDYSQIE 698

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA ++G++  ++AF  GED +  T A+ F  P+ +V+ + R+  K +   + Y    
Sbjct: 699 LRLLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQ-- 756

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
              +       L +            +E +    +    +  +  +    + + G     
Sbjct: 757 ---QAYGLSQSLHISMAEARDMIDRYYEAYPGVRTFLDNVVARAKQTGYAETMYGR---- 809

Query: 506 VKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                R     +      L        +      +A  +  +                  
Sbjct: 810 -----RRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIKI------------------ 846

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
                          +   + +L  E               +  ++              
Sbjct: 847 --------------AMARVSRRLEEE-------------GFAAHMI-------------- 865

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            L VHDE+  E P      +  +   +M         +PL AE      +
Sbjct: 866 -LQVHDELDFECPVDEVERLTAMVRDVMEHVVD--LRVPLIAEASTGITW 912


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/667 (13%), Positives = 181/667 (27%), Gaps = 143/667 (21%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85
              +   A    D     +D  E           +L D       H++           G
Sbjct: 335 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALAG-RG 393

Query: 86  IDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141
            ++       T + +             +A    LN +    +    +A++      S +
Sbjct: 394 WEVAGLTC-DTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAMLDFGNDSSAE 452

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S           +A  +       + E        L  L D E  +     ++   G  +
Sbjct: 453 SM---------ERAVAVTKLADVMEKEVEARGGSEL--LHDVEMGVQRCLISMERVGIAV 501

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259
           D D++  L+    +   +      +   G   +      L+  LF    +     ++   
Sbjct: 502 DTDILEGLRSEFDERVTRAQGAAWEAA-GEKINLSSPKQLQGVLFEKLDMPKTRRTKSGY 560

Query: 260 -----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                 L  +   +    LA  L+ +R A        ++ L + +  DGR+  T     A
Sbjct: 561 TTDADALAGLYEKTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIA 617

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                                +R   +   G 
Sbjct: 618 -ATGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVVGEGY 652

Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR+  K
Sbjct: 653 ESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIK 712

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M                    GL                                   +
Sbjct: 713 AMNYG--------------LAYGLS------------------------------AYGLS 728

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K+     + +   + ++   V +  +++ +           +               
Sbjct: 729 NQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVDQARRQGYTETLL--------------- 773

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                       RR    D+            +               +Q  + D++   
Sbjct: 774 -----------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADLIKLA 813

Query: 614 MK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
           M        + G    ++L VHDE++ E        V  +    M         +PL   
Sbjct: 814 MVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVS 871

Query: 667 GYEAKRY 673
               + +
Sbjct: 872 IGVGRSW 878


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/658 (13%), Positives = 177/658 (26%), Gaps = 135/658 (20%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKK 82
           +A QA I      +  + V      +     S LL+ L    V       ++F+     +
Sbjct: 337 FAGQAGIDGIGLCFSKKDVYCIRAGQG-IELSWLLEQLE--GVAKDAGRFAMFDIKEALE 393

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
            + I          +V A       S            +  +            +  ++ 
Sbjct: 394 HIRIA-RQDNCFDVTVAAYLLNPLKS-----------NYTYEDVA---------REQLNL 432

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYR 200
              D   A     ++ +  Y        + L + L+     D E  L      +   G R
Sbjct: 433 IIEDKLDAWMKACYEAYTAYAA-SGILWKRLKECLMDRLFMDVEMPLVFTLYDMEVNGVR 491

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           ++ + +    + +  +  +L++DI +   G   +      L + LF    I     ++  
Sbjct: 492 VEAEALKYYGDQLGAKIVELEKDIYEEA-GENFNINSPKQLGVVLFENMKIPGGKKTKTG 550

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T   +L            IL     +       + L+  +  DGR+         + T
Sbjct: 551 YSTAADVLEKLAPDYPIIAKILEYRQYTKLKSTYADGLANYIREDGRIHSKFNQT-ITAT 609

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   I  +G   V
Sbjct: 610 GRLSSTEPNLQNIP------------------------IRVELGRLIRKVFIPEDGFVFV 645

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE RVLA  +G+   I+A+   +DI+  T ++ F+ P D+V+ +QR   K +  
Sbjct: 646 DADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNF 705

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            + Y        +      L + +   +      F  +   +           E      
Sbjct: 706 GIVYG-----ISSFGLSQDLSITRKEASKYIEDYFTAYPGIKIFLDDTVKHAKEMGYVVT 760

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556
           L G    +           +               +      +A  +  +    +     
Sbjct: 761 LFGRRRPV---------PELSSSNYMQRSFGERVAMNAPIQGTAADIIKIAMTGV----- 806

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RRL    +K                                          
Sbjct: 807 --------GRRLKEQKMKSRLV------------------------------------LQ 822

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                          ++ E        V  +    M +  S    +PL+ + +  + +
Sbjct: 823 VHDE-----------LLVEAYKPELDQVKKILKEEMEQAAS--LDVPLEIDMHTGENW 867


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
              + + A +   +   + D  E   A  S L   LR +    + H+S  +   + ++LG
Sbjct: 341 HGDVRILAVSGAPDEAWVVDLAEAGEADVSKLSSALRSK--TLILHSSKTQIKAW-RSLG 397

Query: 86  IDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSID 141
           +D+       T++ A           L+              + + G+  +      +  
Sbjct: 398 LDVDDVA-GDTALAAYLLVPDQRSYELQQIALERAGIELSDAESDSGQLALDLESDQTAQ 456

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +  +       V              +  R++          E  L  +   +   G  +
Sbjct: 457 THGHRAAALLEVHDILAAKIDEANMSQVYRDI----------ELPLVPVLARMELAGIAV 506

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259
           D   +  L +   ++     E   +     + +      L+  LF    +     ++   
Sbjct: 507 DEAGLSGLIDEFTKQANASAELAYEAIGHEV-NLGSPKQLQTVLFDELDMPKTKRTKTGY 565

Query: 260 -TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
            T    L+           + L+  R ++       +  L + V+ DGR+  T Q   A 
Sbjct: 566 TTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQT--VVGLLKTVAEDGRIHTTYQQTVA- 622

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN--- 372
            TGR S      QN+P                            +   +R   IA     
Sbjct: 623 ATGRLSSLDPNLQNIP------------------------VRTESGRRIREIFIADPHVD 658

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
             +L+ AD + IE R++A ++G+   I+AF +GED++    +K F   ID+V    R+  
Sbjct: 659 DARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKV 718

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K M   L                GL                                   
Sbjct: 719 KAMSYGLV--------------YGLS------------------------------AYGL 734

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           + +  +     + + + +  +   V     ++ E           +              
Sbjct: 735 SRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIM-------------- 780

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR     +  D   L     +               +Q  + DI+  
Sbjct: 781 ------------GRRRYLPALHSDRRQLRDMAERA---------ALNAPIQGSAADIMKI 819

Query: 613 GMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
            M   +         ++L VHDEI+ +       SV  +    M         +PL    
Sbjct: 820 AMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFE--LDVPLDVNV 877

Query: 668 YEAKRY 673
                +
Sbjct: 878 GTGTSW 883


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 111/729 (15%), Positives = 208/729 (28%), Gaps = 178/729 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQ---------AVITLCAYAWDDEPVKLWDRTEQ---- 50
           +  D ET             Y            A I   +++  +          +    
Sbjct: 22  IAFDFET--------APREKYRRDEKAALDAHKADIAGVSFSVSEGTAVYVPLKHKTGKN 73

Query: 51  ----SAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                 +   L +    +  V+ +AHN  FE +     LG+ +       T + A    L
Sbjct: 74  AGSPDKIMQWLSENVFANRKVVKIAHNLSFEAMFL-YALGVVLQP-PCYDT-IAAALMTL 130

Query: 106 PSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            S+        +        +   G  L +     +              Q  +    Y 
Sbjct: 131 KSNTAFRTLADS-GLKTLTQE-LFGVDLPSFETVTA-----GRYFDELDPQDEETVR-YA 182

Query: 164 KRDVEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             D + T  L+                     E    +    +   G   D +L+LK Q 
Sbjct: 183 CADSDYTLRLYHLFNNWFNRYLPKHRFIVEKLESPAAVYCGLMKYNGLLADEELMLKKQA 242

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVDMSEG-----TLKSIL 265
               +  +L  +I  L   +   +   T A + YL+    + +   +         ++++
Sbjct: 243 EAEGKLAELRGNIAFLIGDVNIGANASTSAFKKYLYDDLKLPVFKTTAKYQEAMDDEAMI 302

Query: 266 SHSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
             S   +  +       +L+             ++   E ++S  GR+   +   G + T
Sbjct: 303 LLSEWCRENRPELAELFELVQEYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLG-TET 361

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR++      QN PR++                             VR+  IA  GK L+
Sbjct: 362 GRFAARNPNLQNCPRKDNDPVG------------------------VRNFFIAPKGKALL 397

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRA 430
             D + IE RV A+   ++  ++ +  G DI+  T +  +  P +       +  KE+RA
Sbjct: 398 SLDFSQIELRVGAFYCRDERMLETYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRA 457

Query: 431 IGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           I K     + Y    K   + +    GLD                               
Sbjct: 458 IAKNCNFGVFYGLFPKGLHRNLKFKAGLDTPLS--------------------------- 490

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                        CE +    +A +  ++Q      +          + +          
Sbjct: 491 ------------ECERIIANLKAGYPRLVQWQ---EKTKKRAASRRYTETWL-------- 527

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+         A+S   ++           +Q  + DI
Sbjct: 528 ---------------GRRRYLPDI---------ASSDWGKKSFAERCALNTPIQGTAADI 563

Query: 610 LCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663
           L   +         +     VL +HDE+V E P+         + S M + P     +P+
Sbjct: 564 LKLALGRIIEGLPQRMRLRPVLQIHDELVFEVPEDKVHEAAVFIKSCMEERPFEEFDVPI 623

Query: 664 KAEGYEAKR 672
            AE     R
Sbjct: 624 VAEAAFGVR 632


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/678 (13%), Positives = 192/678 (28%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEIFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     N +       E   +D +    L+       
Sbjct: 440 NREDEFLK-----------------IKEVNIMPNLYKVLEEKIKDQDMEELLY------- 475

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 476 KVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R+  K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E      ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVYKDELEKIKALVEKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/639 (12%), Positives = 165/639 (25%), Gaps = 146/639 (22%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNG 104
           D   Q  +   + +   ++ ++ +     ++     + L +            + A +  
Sbjct: 351 DNLTQEELLK-IEELANNKQILKI----SYDVKFTLRALDVTPKEIINCFDVRLAAYSLN 405

Query: 105 LPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +    K                E K         +             ++    F  +
Sbjct: 406 PGADIGFKALAAQY-LDVI----IEPKDEKEFLTLQNQYIWSLKEVLERDLKEKDQFKIF 460

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                              + E  L  +   + + G  +D   +    + +  E   +  
Sbjct: 461 N------------------ELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQN 502

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
           DI K     I +      L   LF    +  V  ++    T + +L            IL
Sbjct: 503 DINKDAQREI-NVNSPKQLGALLFDQLKLPSVKKTKTGYSTDEEVLQQLVNLHPIVKKIL 561

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
              +++      ++ L      + R+   L   G + TGR S      QN+P        
Sbjct: 562 EYRSNAKLKSTYVDNLIMLADGNSRVHTYLDQTG-TVTGRLSSSSPNLQNIP-------- 612

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R   +A  GK L+  D + I+ R+LA  + +   +
Sbjct: 613 ----------------IRTPKGRMLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLV 656

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
            AF  G DI+  T A+ F    + VS E R+  K +   +                    
Sbjct: 657 NAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAKAINFGII------------------- 697

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            +    +     +     + A ++GV +
Sbjct: 698 -------------------------YGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVRE 732

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
                             +   R     ++                              
Sbjct: 733 WIDKNIALARERGYVKTLLGHIRYLPEFKMGS---------------------------- 764

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635
                S   R           IVQ  S D++ + M +   +       ++L VHDE++ E
Sbjct: 765 -GHMASFAQRAAI------NTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFE 817

Query: 636 TPD-TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            P+         + + M         +PL AE      +
Sbjct: 818 LPEKNLLKEAAVIKNKMEHTIE--LKVPLLAEAKTGVNW 854


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 192/661 (29%), Gaps = 142/661 (21%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             +     A   E V      + S   + L ++L          ++  +     +  G  
Sbjct: 357 PSLVGFGLASATETV-YVPWEDGSHHGAALTEWLASPAR-KCFFHAKPQFKTLLRA-GFA 413

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    +  T + +      S+ ++    +           G+ L         D      
Sbjct: 414 VDGLAF-DTRIASWLVKPGSAPQSLAEQVW-------EVLGETL------PVSDPNQLVP 459

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLV 206
                  A + +      D +AT  L +R   + D  E  L  +   +   G  ID   +
Sbjct: 460 LADAVSPATEAWFVRRVADGQAT-ALDERTRAVLDEIELPLVAVLAEMELNGVAIDAVAL 518

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKS 263
            +L++ +  +   L           I +      L+  LF   G+           T  +
Sbjct: 519 TRLRDRLTGKASDLAARAYAEIGHEI-NLGSPKQLQQVLFEELGMPKTRSTKTGYSTDAA 577

Query: 264 ILSHSNITQLAK---DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L+             L+ +R A+    I  + TL  +V+ DGR+  T    G + TGR 
Sbjct: 578 SLADLQEKSPHPFLGLLLQHRDATKLKQI--VETLERSVTGDGRIHTTYDQTG-TSTGRI 634

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +RS  ++    + L+ A
Sbjct: 635 SSNDPNLQNIP------------------------IRTEEGREIRSSFVSGGEDETLLTA 670

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ +   I+AF  GED++    ++ F  P ++V+   R   K M   L
Sbjct: 671 DYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGL 730

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL     S+ ++  ++                            
Sbjct: 731 --------------AYGLSAFGLSKQLRIETS---------------------------- 748

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                 +   +  +   V    +++ E                              D  
Sbjct: 749 --EARELMNGYFERFGAVRDYLRNVVEQAR--------------------------LDGF 780

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-- 617
                 RR  ++D+      L     +               +Q  + DI+   M     
Sbjct: 781 TETIFGRRRPFADLTSTNRVLRENAERQ---------ALNAPIQGSAADIMKIAMLGIAG 831

Query: 618 ----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                + G  ++L VHDE++ E       ++ T+    M         +PL  +      
Sbjct: 832 DMSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVRARMVGAAD--LRVPLDVQIGRGST 889

Query: 673 Y 673
           +
Sbjct: 890 W 890


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/652 (14%), Positives = 167/652 (25%), Gaps = 124/652 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A    P   +D  E           +L D     V H++     +F +  G  I   
Sbjct: 365 VALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVFAEH-GWSIEGV 423

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
               T++ A           L    L     E           +A       ++      
Sbjct: 424 TM-DTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAVA-DGQLAFGADEGAEAEALMVQ 481

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
               +   + FG   +    A          L D E     L   +   G   D   +  
Sbjct: 482 ARAILDLGEAFGSRLEEVGAADL--------LRDMELPTSALLARMERHGIAADRAHLEA 533

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSIL 265
           ++++ A   ++  ++          +      L+  LF    +     ++    T    L
Sbjct: 534 MEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKRTKTGYTTDADAL 592

Query: 266 SHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +            ++L     +   +  +  L + +++DGR+  T     A  TGR S  
Sbjct: 593 AWLATQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSST 650

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382
               QN+P                                +R   +   G + L+ AD +
Sbjct: 651 DPNLQNIP------------------------VRTDEGRAIRRGFVVGEGFESLLTADYS 686

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RV+A ++ ++  I+AF +GED++ T  A+ F      V  E R   K M   L Y 
Sbjct: 687 QIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAYG 746

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         L+++         + FE +     +   + D+         L G  
Sbjct: 747 -----LSAFGLSQQLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATLFGR- 800

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +    +   E    +                               
Sbjct: 801 --------RRYLPDLSSDNRQRREAAERMALNAPIQGTAADIV----------------- 835

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
               ++    V G                                D+    +        
Sbjct: 836 ----KIAMLKVDGALRET---------------------------DLASRMLLQVHD--- 861

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                   EIV E       +V  L    M         +PL         +
Sbjct: 862 --------EIVLEVAPGERPAVEELVRREMADAVR--LRVPLGVSVGVGPNW 903


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 175/644 (27%), Gaps = 126/644 (19%)

Query: 44  LWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             D T         +  +L D +     H++           G  +       T + A  
Sbjct: 355 WVDLTALDPAGEAAVGAWLEDASRPKAMHDAKGPIEALA-ARGWILRGLT-SDTQLAAYL 412

Query: 103 NGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    L +     L      T    G+ ++         +   +  RA  V+    
Sbjct: 413 VKPDQRTYHLDDLVLRHLRRELSATTDTHGQGMLDFAGDADEKAALKEMVRATAVRDLA- 471

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
                  D +        L+   D E  L  +   +   G  +D+D +  L+E  A +  
Sbjct: 472 ----AVLDEQVAATGGTELLS--DIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVT 525

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-------LVDMSEGTLKSILSHSNIT 271
           +  +D      G   +      L++ LF   G+                L  + + +   
Sbjct: 526 QAQQDCWDAIGGDQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHP 585

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L  + +L    ++   +  +  L ++VS DGR+  T     A  TGR S      QN+P
Sbjct: 586 FL--EALLRHRDAAKLRVT-VEGLQKSVSDDGRIHTTYLQTIA-ATGRLSSTEPNLQNVP 641

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
                                           +R   +  +G   L+ AD + IE RV+A
Sbjct: 642 ------------------------IRTEEGRRIRELFVVGDGYDALMSADYSQIEMRVMA 677

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+   I+AF +GED++    ++ F    + V+   R+  K M   L Y         
Sbjct: 678 HLSGDSGLIEAFRSGEDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYG-----LSA 732

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L +            F  +    ++   +  +         + G          
Sbjct: 733 YGLSKQLAISTEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMFGR--------- 783

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +    +   E    +                                    L  
Sbjct: 784 RRYLPDLTSDNRQRREMAERMA-----------------------------------LNA 808

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                    +  A   + R  T  G  T  ++Q                        VHD
Sbjct: 809 PIQGSAADIMKVAMIGVDRTLTEAGARTRILLQ------------------------VHD 844

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E        V  +    M         +PL       + +
Sbjct: 845 ELVLEVAADEQADVERIVREQMGHAAE--MDVPLDVNIGVGRSW 886


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 100/658 (15%), Positives = 184/658 (27%), Gaps = 156/658 (23%)

Query: 39  DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           ++     D T+      + L  ++   T   VAH+      +           +  + T 
Sbjct: 340 NDSAIWVDLTDLDENSFNALDTFI--STKKVVAHDVK--PQVHAWVERGFTQPRPIMDTE 395

Query: 98  VLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           + A          SL +    L                             D       +
Sbjct: 396 LAAYLLAPDARGYSLADMASDLGV-----------------VLEEDRDLLTDVGEQLGHR 438

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
           AW     Y +   +  R     L  + DG E     +   +   G  ID  ++ +L    
Sbjct: 439 AWVTVALYPRLRQDLER---NHLQDVLDGIEIPTQEILARMEIAGIAIDQSVLNELITEF 495

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILS 266
               ++   +        + +      L+  LF    +     ++        +L  +L 
Sbjct: 496 EAAAQQSASEAYASIGHEV-NLNSPKQLQTVLFDELNMPKTKRTKTGYTTDADSLADLLV 554

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            +    L   L+ +R  +       +  L + V+ DGR+  T     A  TGR S     
Sbjct: 555 KTQHPFLEH-LLAHRDRTKLKQT--VVGLQKVVADDGRIHTTYLQTVA-ATGRLSSKDPN 610

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-LVVADLAG 383
            QN+P                            A   +RS   A   +G + L+  D + 
Sbjct: 611 LQNIP------------------------VRTDAGRRIRSVFQAAQDDGYESLMSVDYSQ 646

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G++  I+AF +GED++     + F  PI+ V+ +QR+  K M   L    
Sbjct: 647 IEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVTDQQRSKVKAMSYGLV--- 703

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       GL                                   + +  +     
Sbjct: 704 -----------YGLS------------------------------AYGLSRQLGIPTGEA 722

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
             +   + A+   V +    + E                                +    
Sbjct: 723 SALMDDYFARFGAVKEYLDQVVEEAR--------------------------GRGYTETM 756

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RR     ++ D   L     +               +Q  + DI+   MK        
Sbjct: 757 YGRRRYLPQLRSDRRQLREMAERA---------ALNAPIQGSAADIMKIAMKRVDDALRE 807

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674
                 ++L VHDEI+ E        V  L    M++       +PL         ++
Sbjct: 808 AELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAAD--LSVPLDVNVGVGPNWQ 863


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 91/601 (15%), Positives = 168/601 (27%), Gaps = 142/601 (23%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +                           
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205
             +  Q      +  ++    L   L  +       + E  +  +   +   G  +DL +
Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262
           + +LQ     + +    +      G   +      L++ LF   G+     ++    T  
Sbjct: 527 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585

Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L              +L     +   +  ++ L +AV++DGR+  T     A  TGR 
Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            A   +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M    
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL                                   + + K+ 
Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                    A+ A+  GV    + + E           +                     
Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    ++               R            +Q  + DI+   M    K
Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E        V  L    M         +PL+      + 
Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898

Query: 673 Y 673
           +
Sbjct: 899 W 899


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 97/632 (15%), Positives = 169/632 (26%), Gaps = 140/632 (22%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113
              +L D     V HN+     +F +  G  +       T++ A          +L    
Sbjct: 389 FATWLADPAKPKVLHNAKGVMRVFAEH-GWTVEGVSM-DTALAAYLVKPGRRSFALDALS 446

Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L          +G   +A       ++          +   + FGE  K    A   
Sbjct: 447 LEYLGRELEPAATADG--QLAFGADEGAEADALMVQARAILDLGEAFGERLKEVGSADL- 503

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                  L D E     L   +   G   D   +  ++++ A   ++  ++         
Sbjct: 504 -------LRDMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQQAVKEAHAAAGHEF 556

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASSGS 287
            +      L+  LF   G+     ++    +                  ++L     +  
Sbjct: 557 -NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKL 615

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            +  +  L + +++DGR+  T     A  TGR S      QN+P                
Sbjct: 616 RVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP---------------- 657

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                           +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GE
Sbjct: 658 --------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGE 709

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           D++ T  ++ F      V  E R   K M   L                GL     SQ +
Sbjct: 710 DLHTTVASQVFGVERSAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQL 755

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              +                                   +   +  +  GV    +   +
Sbjct: 756 NIDAG------------------------------EARALMDTYFERFGGVRDYLRRAVD 785

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  RR    D+  D          
Sbjct: 786 EARATGYTETLF--------------------------GRRRYLPDLNSDNR-------- 811

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
             R  T         +Q  + DI+   M N  +          ++L VHDEIV E     
Sbjct: 812 -QRRETAERMALNAPIQGTAADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGE 870

Query: 641 YFSVGTLCSL-MTKNPSWAKGLPLKA---EGY 668
                 L    M          PL     +G 
Sbjct: 871 RAKTEELVRREMASAVQLRA--PLDVSVGDGG 900


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 195/656 (29%), Gaps = 129/656 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           +   A A D++ V   D    Q  + + L  + + +      +N   +    K   GI I
Sbjct: 328 LMGVALACDEQ-VYYVDIEHAQDDVITPLKDFFKRKDTEFYGYNIKRDHHALKNA-GIHI 385

Query: 89  PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            +      ++        +  S +   +     E   K   GK    +     + SP   
Sbjct: 386 DNITL-DLALAEHLINGGAKISYQTLLVDHGLMESAGKY--GKE-WGQLSLPILKSP--- 438

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
              A +   +       K+ +    ++        + E  L  +  TI   G  +D++ +
Sbjct: 439 AKPAEYFGEFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLENVLFTIERNGMPLDVEDL 498

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L+  +++E   L +DI     G   + +    L   L+   G+  +D +  T   +L 
Sbjct: 499 QELERTLSEELAILTDDIY-TLAGASFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLE 557

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
                    + IL   A        +  L   +     R+  T    G + TGR +    
Sbjct: 558 ALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDP 616

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGI 384
             QN+P                                +R            + AD + I
Sbjct: 617 NLQNIP------------------------IRSERGRLLRKAFRDTRQNNYFLSADYSQI 652

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R LA ++ ++    AF + ED++  T ++ F+ P+++V+K+QR   K +   +     
Sbjct: 653 ELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII---- 708

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                                                      Q    +   K+  +  +
Sbjct: 709 ----------------------------------------YGQQAYGLSKILKISVSEAQ 728

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +  A+  ++  V +   +                                 ++ +    
Sbjct: 729 KLIDAYFDRYPAVARFIDETISQA--------------------------CENLRVKTLL 762

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618
            R         +    N       R  + G       +Q  + +++   M          
Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLADALEKR 812

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L +HDE++ E P+     V TL   +M         +PL       K +
Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 82/588 (13%), Positives = 155/588 (26%), Gaps = 132/588 (22%)

Query: 94  ICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
               V A            ++     L              LI    + S  +     T 
Sbjct: 404 FDVIVAAYLLNPLKSDYDYEDVAREQLGL------------LIDEKTEESTKACYEAYTA 451

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              V+             +       +L    + E  L      +   G  ++ + +   
Sbjct: 452 YMAVEPLNR---------KMEETGMTKLFR--EIEMPLVFTLYEMEQAGIHVEGEALKAY 500

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
            + +     +L+++I  +  G   +      L + LF    +     ++    T   +L 
Sbjct: 501 GDQLGNRIVELEKEIYDMA-GETFNINSPKQLGVILFEKLEMPHAKKTKTGYSTAADVLD 559

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                      IL     +       + L+  +  DGR+ G       + TGR S     
Sbjct: 560 KLAPEYPIVAKILEYRQLTKLKSTYADGLATFIGPDGRIHGKFNQT-ITATGRISSTEPN 618

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R   +   G   V AD + IE 
Sbjct: 619 LQNIP------------------------VRMELGRLIRKVFVPKEGCVFVDADYSQIEL 654

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA  +G++  I+A+    DI+  T ++ F+ P D+V+  QR   K +   + Y     
Sbjct: 655 RILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYG---- 710

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
              +      L + +          FE +   ++          E      L G    + 
Sbjct: 711 -ISSFGLSQDLSITRKEAARYIEHYFETYPGIKTFLDQCVADAKEKGYAVTLFGRRRPV- 768

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                     +                                                 
Sbjct: 769 --------PELKSSNFMQRS---------------------------------------- 780

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                   G+   +N              K+    V     D + +           ++L
Sbjct: 781 -------FGERVAMNAPIQG---TAADIIKIAMIRV----SDEMKK-----QNMKSRMIL 821

Query: 627 TVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E  +     V  +    M    S    +PL A+ +  K +
Sbjct: 822 QVHDELLIEAAEEEVDEVKKILKEEMEHAAS--LSVPLLADMHTGKNW 867


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/601 (15%), Positives = 168/601 (27%), Gaps = 142/601 (23%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +                           
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205
             +  Q      +  ++    L   L  +       + E  +  +   +   G  +DL +
Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262
           + +LQ     + +    +      G   +      L++ LF   G+     ++    T  
Sbjct: 527 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585

Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L              +L     +   +  ++ L +AV++DGR+  T     A  TGR 
Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            A   +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M    
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL                                   + + K+ 
Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                    A+ A+  GV    + + E           +                     
Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    ++               R            +Q  + DI+   M    K
Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E        V  L    M         +PL+      + 
Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898

Query: 673 Y 673
           +
Sbjct: 899 W 899


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 91/601 (15%), Positives = 168/601 (27%), Gaps = 142/601 (23%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +                           
Sbjct: 418 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 465

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205
             +  Q      +  ++    L   L  +       + E  +  +   +   G  +DL +
Sbjct: 466 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 525

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262
           + +LQ     + +    +      G   +      L++ LF   G+     ++    T  
Sbjct: 526 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 584

Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L              +L     +   +  ++ L +AV++DGR+  T     A  TGR 
Sbjct: 585 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 642

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            A   +R   +  +G  +L+ A
Sbjct: 643 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 678

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M    
Sbjct: 679 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 737

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL                                   + + K+ 
Sbjct: 738 -------------LAYGLS------------------------------AYGLSQQLKIS 754

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                    A+ A+  GV    + + E           +                     
Sbjct: 755 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 793

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    ++               R            +Q  + DI+   M    K
Sbjct: 794 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 839

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E        V  L    M         +PL+      + 
Sbjct: 840 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 897

Query: 673 Y 673
           +
Sbjct: 898 W 898


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 89/628 (14%), Positives = 165/628 (26%), Gaps = 142/628 (22%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSE 120
           +   V HN+     +F +  G  +       T++ A          +L       L+   
Sbjct: 397 SKPKVVHNAKGLMRVFPEH-GWSLAGVAM-DTALAAYLVKPGRRSFALDVLSMEYLHREL 454

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      +A     + ++          +     F         A          L
Sbjct: 455 QPA---AQDGQLAFGSDDTAEAEALMAQARAVLDLGDAFTGRLAEVGAAEL--------L 503

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            + E     L   +   G   D D +  +++  A   ++  ++          +      
Sbjct: 504 HEMELPTSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPKQ 562

Query: 241 LRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           L+   F    +                L  + + ++       ++L     +   +  + 
Sbjct: 563 LQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPV--IMLRHREQAKLRVT-VE 619

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L + + +DGR+  +     A  TGR S      QN+P                      
Sbjct: 620 GLVKTIGADGRVHTSFSQIVA-ATGRLSSTDPNLQNVP---------------------- 656

Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                     +R   +   G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T 
Sbjct: 657 --VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTV 714

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            ++ F     +V  E R   K M   L                GL     SQ +      
Sbjct: 715 ASQVFGVERGEVDPEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIDPG- 759

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                            + + +  +  GV    + + E      
Sbjct: 760 -----------------------------EARGLMETFFERFGGVRDYLQRVVEEARATG 790

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                +                           RR    D+  D      A  ++     
Sbjct: 791 YTQTVL--------------------------GRRRYLPDLNSDNRMRREAAERM----- 819

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                    +Q  + DI+   M    K          ++L VHDEIV E        V  
Sbjct: 820 ----ALNAPIQGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIAPGERKKVEE 875

Query: 647 LCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           L    M          PL         +
Sbjct: 876 LVRREMGAAVELRA--PLDVSVGVGPDW 901


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/619 (12%), Positives = 167/619 (26%), Gaps = 137/619 (22%)

Query: 75  FERILFKKTLGIDIPSKRWI----CTSVLARTNGLPSSLKNAC----LALNFSEHLTKME 126
           F+    +  +G+               + +      ++  +          F     ++ 
Sbjct: 7   FDLK--RNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEII 64

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
            GK               +  T+ + +   +         +    +  ++L    + E  
Sbjct: 65  YGKGKKQ-HSVDVDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIP 116

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           + ++   +   G ++    ++K++  +      L   I +L      +      L + LF
Sbjct: 117 IAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILF 175

Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
               +     ++    T   +L            IL+    S      +N L + + +DG
Sbjct: 176 EKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADG 235

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           ++         + TGR S      QN+P                                
Sbjct: 236 KIHTRFLQT-LTTTGRLSSVEPNLQNIP------------------------VKLEEGKQ 270

Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI- 421
           +R   +       L   D + +E RVLA ++ E   ++AF  G DI+  T  K F     
Sbjct: 271 IRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNL 330

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D+V+   R   K +                    G+     ++N                
Sbjct: 331 DEVTPLMRRHAKAVNF--------------GIVYGISDYGLAKN---------------- 360

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                           +     +     +  ++  +    K   +           +   
Sbjct: 361 --------------LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-- 404

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                   RR +  D+      + +      R          + 
Sbjct: 405 ------------------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSP 431

Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +Q  + DI+   M          K    ++L +HDE++ + P      + TL   +M + 
Sbjct: 432 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 491

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL A+      +
Sbjct: 492 AQ--LDVPLIADANWGHNW 508


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/766 (13%), Positives = 210/766 (27%), Gaps = 198/766 (25%)

Query: 2   SKLFIDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA- 52
           S++ ID+ET    P      + K  + AY  ++Q  I     +             +   
Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266

Query: 53  --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   +   L + L  E +  +AHN  F+    + +L I + +  W  T ++     
Sbjct: 267 MPGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIW-DTMLIHYLCI 325

Query: 105 L----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                   LK+                   +         + P  +      +  W +  
Sbjct: 326 TEEKGTHGLKDLAW---LETD---------MGGYDDALDGEKPKGEDEGNYDLIPWDILK 373

Query: 161 EYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKL 209
            Y   D + T  L ++ IPL +                +     I   G  +D + +  L
Sbjct: 374 VYLADDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVL 433

Query: 210 QELIAQERKKLDEDIVKLTD---------------------------------------- 229
           +    +E  +L++ + +  +                                        
Sbjct: 434 RVSYEKEISRLEDKMREFPEVVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKY 493

Query: 230 -----GIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280
                G   +   T  L   LF   G++        +  T    L           +++ 
Sbjct: 494 DPSKGGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLME 553

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              ++      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  + 
Sbjct: 554 FRKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLF 612

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
               +      +                   +G  +V  D + +E R+LA I  +   I 
Sbjct: 613 QYNFEIKKMFNSRFG----------------DGGVIVQFDYSQLELRILAVITQDPTLID 656

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
            + +G D++    + AF   I++VSK+QR   K ++  + YQ  A+         G+   
Sbjct: 657 LYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI--- 713

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                                +    CE+  K +  +   V + 
Sbjct: 714 ------------------------------------TMSEDECEIFIKKYFKRFPKVSKW 737

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +D  +                                       R     D+       
Sbjct: 738 IRDTKKHVKRHKYVKTLT--------------------------GRTRNLPDIDSIDQSK 771

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVS 634
               ++  R+           +Q    D     +    +          I +TVHD IV 
Sbjct: 772 ---ANEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVL 822

Query: 635 ETPDTPY-FSVGTLCSLMTKNPSWAK------GLPLKAEGYEAKRY 673
           + P          +  +M     + +       +P+ +E    + Y
Sbjct: 823 DCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNY 868


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 97/724 (13%), Positives = 195/724 (26%), Gaps = 161/724 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQS------- 51
             +  DIE        ++     A       I   + +  +          ++       
Sbjct: 23  KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82

Query: 52  -AMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
             M + L  +   +E+++ VAHN  FE        GI I  +    T       G   + 
Sbjct: 83  HRMIAWLKGFVFHNESLIKVAHNIAFESSFL-YEYGIVIK-EPVFDTM-----LGSMLTF 135

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K+        E   K+   K +                    H +  +    Y   D + 
Sbjct: 136 KSFGEFRTLRECGLKLLA-KEIFNEDLPSFSHVVNGTHFDNLHSEHKETVR-YACADSDY 193

Query: 170 TRELFKRLIPLSDGERDLWLLDQ------------TINDRGYRIDLDLVLKLQELIAQER 217
              L+   +   +       L               +   G  ++ +L+ +      +E 
Sbjct: 194 ALRLYNWCLEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEEL 253

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMY---LFLITGID--------LVDMSEGTL----K 262
           +    +I+   +  + +       + +   LF    +            + + +L    +
Sbjct: 254 EFCKREILSFANREV-NLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDE 312

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
             L +        + I      S      +  L + +    G++     F   + TGR+S
Sbjct: 313 WCLRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDF-FSMGTETGRFS 371

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QNLPR++                             +R   I S     +  D 
Sbjct: 372 SRNPNLQNLPRKDNDHLG------------------------IRKLFIPSPNHVFLDFDF 407

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKV 434
           + IE RV A+   +   I AF    DI+  T +  +N P+++ +       K++R I K 
Sbjct: 408 SQIELRVGAYYCRDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKN 467

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
               + +    K  +    + G                                      
Sbjct: 468 CNFGVFFGLFPKGLQKTLMYKG-------------------------------------- 489

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +    CE + +  +  +  +    KD  +  A                         
Sbjct: 490 GINISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRT---------------- 533

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+K         +    +            +Q  + DI+   M
Sbjct: 534 ----------GRRRYLKDIK---------SKDWNKRAVSERCALNTPIQGTAADIIKIAM 574

Query: 615 KNA-----TKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGY 668
                    +     +L +HDE++ E  +     ++  +   M + P     +PLK E  
Sbjct: 575 ARILRELPEREYIKPLLQIHDELLFEVREDKVNEAIAFIKDCMERTPFKDFNIPLKVEYS 634

Query: 669 EAKR 672
               
Sbjct: 635 VGYN 638


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 131/717 (18%), Positives = 216/717 (30%), Gaps = 177/717 (24%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQYLR 62
           +DIET    P              I+L   A  + PV L      T + +    L +++ 
Sbjct: 71  LDIETTGLDPHTS----------EISLIQIAAPNRPVILIEFRSITHKES----LRRFIE 116

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA--CLALNF 118
              +  V HN  FE     K LGI+     WI T ++A+    GLP +L++      L  
Sbjct: 117 HHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPI 176

Query: 119 SEHLTKMEEGKALIARF----------CKGSIDSPPYDCTRANHVQAW-----QLFGEYC 163
                 ++  K L               + +     Y   ++  V  W     Q   +Y 
Sbjct: 177 PNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQLQYA 236

Query: 164 KRDVEATREL---------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             D      L           +L      E         +   G  +DLD   +L + I 
Sbjct: 237 ANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIE 296

Query: 215 QERKKLDEDIVK-----------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
             R+   +   +                  +      +   L    GI     S+ TL  
Sbjct: 297 TRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTNSTSKDTLDK 355

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +  +          I+     S +       L   V+    R+   +    A  +GR+S 
Sbjct: 356 LSENHPEVF----TIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRA-ASGRFSF 410

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                Q +PR+                               RSC + ++G KL++AD +
Sbjct: 411 SNPNLQQIPRE----------------------------RQYRSCFVPASGYKLIIADYS 442

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+ A IA +   I A+ N +D++  T A     P+D+V+K++R +GK +   L Y 
Sbjct: 443 QIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYG 502

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            GA   +  A                                      E     K+    
Sbjct: 503 MGATKLRIYA--------------------------------------ETNYGVKMSIEE 524

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +  +  +   + G+ Q  +D         +   +                  +   I  
Sbjct: 525 AQRFRDNFFKGYPGLHQWHQD------TAFKLRTT------------------KVKDIRT 560

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----AT 618
            S R   + D     S                  L    VQ  S DI    +        
Sbjct: 561 LSGRLRRWKDEPPLTS------------------LLNTPVQGTSADITKLALHKLNTDLD 602

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS-WAKGLPLKAEGYEAKRY 673
           + G   ++ VHDEIV E P+       T L   M      + K +P+  E   A  +
Sbjct: 603 ELGGFPIVVVHDEIVLEVPEVHVAEGSTMLEEAMISAGKRFLKSVPVVVEATIADTW 659


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/668 (14%), Positives = 177/668 (26%), Gaps = 156/668 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A         +    +       L  +L D     V H +        + +G+++   R
Sbjct: 341 VAVGAPGGKAWV---RQWKDDAEALGAFLADPGRPKVLHGAKGAGHAL-RNIGVELDGVR 396

Query: 93  WICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
              T + A           L +     L       K                 +  +D  
Sbjct: 397 -RDTLLQAYLLHPDQRVYDLDDLVIRYLGREIEGRK---------------SPATLFDDV 440

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
            ++   A            ++          L D E  +      + D G  +D  L+ +
Sbjct: 441 DSDDGAAAAAALVELADAFDSELAERGEDGALLDLEMAVSRTLGEMEDAGIAVDEGLLEQ 500

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSIL 265
           L++                  G + +      L+  LF   G+      +    T    L
Sbjct: 501 LRQDFDGRVFAAARSAYDAIGGEV-NLSSPKQLQEVLFDQLGLPPTRKMKSGHTTNADAL 559

Query: 266 SHSN-------------ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           ++                 Q    L+ +R A        +  L  +V  DGR+  T Q  
Sbjct: 560 ANLAVSIAGREDDKALAGQQFLASLLEHRDAIKLRQS--VVGLQRSV-RDGRIHTTFQQT 616

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            A  TGR S      QN+                                 +R+  +   
Sbjct: 617 AA-ATGRLSSTDPNLQNI------------------------HARTAEGRSIRAAFVPGE 651

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           G + ++ AD + IE R++A ++G+   I+AF  G D++    ++ +  P +KV+ + R+ 
Sbjct: 652 GYESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSH 711

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K M   L                GL                                  
Sbjct: 712 IKAMSYGL--------------AYGLS------------------------------AYG 727

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            + + ++     + +   + ++   V      L +           +             
Sbjct: 728 LSKQLRISVAQAQALMDDYFSRFGRVRTYLDSLVQEARKEGYTQTIL------------- 774

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         RR    D+         A     R            +Q  + D++ 
Sbjct: 775 -------------GRRRYLPDLNSTN---RQAREAAERMA------LNAPIQGSAADVIK 812

Query: 612 EGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666
             M        +    ++L VHDE+V E       +V  +    M      A  +PL   
Sbjct: 813 LAMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAVVRREMENAVELA--VPLSVG 870

Query: 667 GYEAKRYR 674
                 +R
Sbjct: 871 IGVGSSWR 878


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/658 (14%), Positives = 171/658 (25%), Gaps = 150/658 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             I   A A D   V         A    L Q          A     +     K L   
Sbjct: 334 PQIRDMAVAVD-GQVVHLSAPHIPAYLERLPQA---------AQIITADGKRLYKVLRTG 383

Query: 88  IPSKRW-ICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
                +     + A          +L                                  
Sbjct: 384 KRPAPFPADVVLGAYLLDPTRTSYALSYLATRF-------------------------EV 418

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P     A  V A  LF        EA  + F         E  L      +   G+ +D 
Sbjct: 419 PLPEGAAPSVCAEALFAAQVWEKEEAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDT 478

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             +  ++  +  +   L+ +I +       +      L   LF +  + +   ++    T
Sbjct: 479 ARLQAMKTALTAQAAALENEIYEAAGAAF-NINSPKQLGHMLFEVLHLPVRKKTKTGYST 537

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319
              +L        A + I+   A        L+ L   +    GR+  +      + TGR
Sbjct: 538 DAEVLESLRDAHPAVEKIVRFRALKKLISTYLDGLEPLIVPATGRVYTSFHQTV-TATGR 596

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378
            S      QN+P                                +RS  +   G   ++ 
Sbjct: 597 LSSSDPNLQNIP------------------------IRTEQGKKIRSLFVPGKGYDYILS 632

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA ++ +   I  F   +DI+  T ++ F+ P ++V+ E+R+  K +   
Sbjct: 633 GDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKAVNFG 692

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               + + +        S F  +     +   +  Q  E  +   +
Sbjct: 693 IIYG-----ISDFGLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKETGITRTM 747

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G    L           +             +                           
Sbjct: 748 FGRMRTLT---------DINSKNFTRRSLAERM--------------------------- 771

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                +NT             KL  N VQ           +   
Sbjct: 772 --------------------AMNTPIQG---SAADIIKLAMNAVQ-----------RELE 797

Query: 619 KN--GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +      +++ VHDE+V E P      V T L   M +  +    +PL A+ +  K +
Sbjct: 798 QRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEAVT--LSVPLIADLHYGKNW 853


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/669 (12%), Positives = 176/669 (26%), Gaps = 157/669 (23%)

Query: 18  KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
           K+ +  + E   +   + +  ++ +   D++      + +   L    V+ + H+    R
Sbjct: 315 KIAIHCHFENNRLNKISLSCSEDNIFYIDQSCLQDALTIINSTLFSNGVLKIVHDI---R 371

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
            + +    I+          +++ +                            L      
Sbjct: 372 KIREIFPTIERVLDSIDDLMIMSYSLDTG----------KHDH-SIPNIIAHNLSK---- 416

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTIND 196
                         +V+ +         +    R   ++L  + +  +R L  +   +  
Sbjct: 417 --------------NVETFSAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFDMEQ 462

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD- 255
            G  +++  + +L +   Q    L+ DI  L      +      L   LF    +     
Sbjct: 463 NGILLNIQKLQELSDKFEQLIAVLENDIHNLAGEKF-NIASPKQLSDVLFNKMELSKKKK 521

Query: 256 -------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307
                   +   L+++             ILN    S       + L + V   DGR+  
Sbjct: 522 SKSGSYSTNYEVLEALEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHT 578

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +      + TGR S      QN+P                              + +R  
Sbjct: 579 SFS-TTVTATGRLSSSNPNLQNIP------------------------IRSEEGNFIRQA 613

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA  G K++ AD + IE ++LA +A      +AFAN +DI+  T  + F          
Sbjct: 614 FIAPKGCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFGV-------- 665

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
                                                  +         +  +  +    
Sbjct: 666 --------------------------------------QEIDEQLRRKAKTINFGIIYGI 687

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                A +  +           + + +  +    +                         
Sbjct: 688 SPFGLAKRLGITFQEAAEYINYYFSCYPEIKVYMEKAVSIARNHGY-------------- 733

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                       +     RR    D+     YL        R             Q  + 
Sbjct: 734 ------------VETLFGRRCFVRDINNKIPYLRQFA---ERAAINAPL------QGTAA 772

Query: 608 DILCEGMKNA-TKNGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLK 664
           DI+   M     +     I+L VHDE++ E  ++    +   +  +M         +PL+
Sbjct: 773 DIIKRAMIRLFDQLKSGKIILQVHDELLVEVEESRVQETAKLMKDIMENAVE--ISIPLE 830

Query: 665 AEGYEAKRY 673
            E   +  +
Sbjct: 831 VEIKISDNW 839


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/668 (13%), Positives = 185/668 (27%), Gaps = 153/668 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           +   A A DD  V   D       +   L  +   +      +N   +    K   GI +
Sbjct: 328 LMGVALACDD-SVYYVDVENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNA-GIHV 385

Query: 89  PSKRWICTSVLARTNGLPSS------LKNA-----CLALNFSEHLTKMEEGK---ALIAR 134
            +      ++        +       L +                  +   K        
Sbjct: 386 NNIAL-DLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQY 444

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           F +     P    T        +        D+              + E  L  +  TI
Sbjct: 445 FGEFVSHLPTIKET------LLKELKSKNIEDI------------FFNMEMPLEKVLFTI 486

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
              G  +D++ +  L++++++E   L +DI  L      + +    L   L+   G+  V
Sbjct: 487 ERNGMPLDVEDLQNLEKILSEELAILADDIYALAGSPF-NIKSPKQLAEVLYNKLGLTPV 545

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           D +  T   +L          + IL   +        +  L + V     R+  T    G
Sbjct: 546 DKARSTKAEVLEAMTGEHDVIEKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG 605

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASN 372
            + TGR +      QN+P                                +R        
Sbjct: 606 -TVTGRLACQDPNLQNIP------------------------IRSERGRLLRKAFCDTHQ 640

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
               + AD + IE R LA ++ ++    AF + ED++  T ++ F+ P++KV+K+QR   
Sbjct: 641 NTYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQA 700

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   +                                                Q    
Sbjct: 701 KTVNFGII--------------------------------------------YGQQAYGL 716

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           +   K+  +  + +  A+  ++  V +   +                             
Sbjct: 717 SKILKISVSEAQKLIDAYFDRYPDVARFINETVSQA------------------------ 752

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
               ++ +     R         +    N       R  + G       +Q  + +++  
Sbjct: 753 --CENLRVKTLLGR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKL 800

Query: 613 GMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665
            M          K    ++L +HDE++ E P+     + TL   +M         +PL  
Sbjct: 801 AMLQLSDALEKRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVV 858

Query: 666 EGYEAKRY 673
                K +
Sbjct: 859 NILIGKNW 866


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/601 (15%), Positives = 169/601 (28%), Gaps = 142/601 (23%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +                           
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205
             +  Q      +  ++    L   L  +       + E  +  +   +   G  +DL +
Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262
           + +LQ     + +    +      G   +      L++ LF   G+     ++    T  
Sbjct: 527 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585

Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L              +L     +   +  ++ L +AV++DGR+  T     A  TGR 
Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            AS  +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP------------------------IRTDASRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M    
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL                                   + + K+ 
Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                    A+ A+  GV    + + E           +                     
Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    ++               R            +Q  + DI+   M    K
Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E        V  L    M         +PL+      + 
Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898

Query: 673 Y 673
           +
Sbjct: 899 W 899


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 198/694 (28%), Gaps = 149/694 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57
           L ID E  S     K  +  Y + A I         + +D+    +       +  ++  
Sbjct: 342 LIIDSE--SSLNEQKEYLANYKKIASIYYESLGIIISTEDKD-FYFPLNHGGLLAKNIDK 398

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---N 111
              + ++    +  +++N           LGI      ++   +        + +     
Sbjct: 399 NLVVNFISQLDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPIIA 452

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       K   GK                D ++     +  +   Y + +    +
Sbjct: 453 ITEYSKLEPKDFKATFGK-------VNVELITTQDFSKYLSDISIGILAIYDELNYLLKK 505

Query: 172 E-LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           E L+K L    + E  L  +   +  +G  ID+         + +E  ++++ I +    
Sbjct: 506 EDLYKVL---MENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAGE 562

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSG 286
              +      L   LF+   +     ++    T   +L            L+L+    + 
Sbjct: 563 EF-NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNK 621

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++TL   V  + R+  +    G + TGR S      QN+P               
Sbjct: 622 LKTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSDPNLQNIP--------------- 665

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R   IA  GK L+  D + +E RVL  ++ ++  I+A+   +
Sbjct: 666 ---------VKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEK 716

Query: 407 DIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           D++  T  + FN    + VS+EQR I                                  
Sbjct: 717 DLHDLTARRIFNLADSETVSREQRTIA--------------------------------- 743

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                      +  +  +         A + K+         K +  ++  V    K++ 
Sbjct: 744 -----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVI 792

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E                                       R+   S +        T  S
Sbjct: 793 EFGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKS 823

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTP 640
           Q  R           ++Q  + ++L + M         K    ++L VHDE++ E   + 
Sbjct: 824 QAERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEKSS 877

Query: 641 YFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +   +M       + + L       K +
Sbjct: 878 VEKYSEILADIMKNTVQL-EDVKLNININIGKNW 910


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/678 (12%), Positives = 185/678 (27%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCKEIFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     +  +                           
Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R   K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E      ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAIEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/678 (12%), Positives = 186/678 (27%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLINPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     +  +                           
Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R+  K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E      ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/593 (14%), Positives = 155/593 (26%), Gaps = 127/593 (21%)

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           D+ +  +   ++ A       S        +FS       EG                  
Sbjct: 410 DLFAMNFFDVTLAAYVLDSSVS------RYDFSYLAETYLEG--------------ALAP 449

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDL 205
               +     Q        D  +   +      + D  +  L  +   +   G  +D D 
Sbjct: 450 VEDDDDRLVMQAACLRALIDPMSQALVADGTKGVYDTIDLPLVPVLAHMERIGALLDTDT 509

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLK 262
           +  L    AQ    + E I +L      +      +   LF + G+           T  
Sbjct: 510 LQALGSRTAQNIADISERIYELAGEKF-NIDSPQQVSHILFDVIGLPPRKRTSRGYSTDA 568

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L   +       LIL     +      ++ L +   +DGRL  +      + TGR S 
Sbjct: 569 KVLEDLSSEHQLPGLILEYRELAKIMGTYIDALPKLRGADGRLHTSFN-ETVTTTGRLSS 627

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R C I  S     V AD 
Sbjct: 628 SNPNLQNIP------------------------VRTEFGRHIRECFIPLSPEHLFVSADY 663

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R+LA ++G+   I AF +G D +  T A+ F  P+++V+ E R+  K +   + Y
Sbjct: 664 SQIELRLLAHLSGDAHLIDAFRSGADFHSATAARVFGVPVEEVTPELRSRAKAVNFGIVY 723

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                  +       L +            F  +    ++   +  Q  E      + G 
Sbjct: 724 GQ-----QAFGLSQSLRIPFGEAQAMIDRYFTAYPVVRAYLDNIVAQAHEKGYALTMFGR 778

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +           +             +            A++ +  M      +   
Sbjct: 779 KRHI---------PELRAHNAQQRAFGERIAMNHPMQGTA--ADIIKKAMVEVDARLRHE 827

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
            P+                                               + M       
Sbjct: 828 FPN----------------------------------------------AKMMIQV---- 837

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                  HDE+    P      V   L  +M         +PL  +   AK +
Sbjct: 838 -------HDELDLSVPADQVGEVSALLKEVMENVVE--LDVPLIVDVQSAKNW 881


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
          Length = 975

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/648 (12%), Positives = 164/648 (25%), Gaps = 136/648 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKT--LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           L   L D  +    H+      + +     GI +   R     +L+              
Sbjct: 431 LRDALEDAALPKDLHDLK---AVLRALEPHGITLAGVR-DDVMLLSYLVNPTHGSHTLPD 486

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDS-------PPYDCTRANHVQAWQLFGEYCKRDV 167
            +    +       K +++        +                 +   ++  +      
Sbjct: 487 VVARFTNRALTPVVKGVVSPTLLPESANAIHRVAPILRKQVEEAGLVVHEIPKDDPALGG 546

Query: 168 EATRELFKR-------------LIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             T E+                L+ + +  +  L  +   + + G RID  ++ ++   +
Sbjct: 547 AVTHEMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSSRL 606

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKSILSHS 268
           A E   L E I   +     +      L   LF    +       +     T + +L   
Sbjct: 607 AVEIDNLAEKIYADSGHRF-NINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEEL 665

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   L++            L+ L      +GR+  T    G + TGR S      Q
Sbjct: 666 AENHPIAALVIEHRQLQKLKSTYLDQLPSLSDREGRIHTTFNQVG-TATGRLSSTNPNLQ 724

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R+  IA+ G  L+ AD + IE R+
Sbjct: 725 NIP------------------------TRTAIGREIRAAFIAAPGNLLMSADYSQIELRL 760

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A  + +   + A+  G+DI+  T A+ F    + + KE RA  K +   + Y       
Sbjct: 761 MAHFSQDPLLLNAYRTGQDIHTLTAAEVFGVDAETMDKETRARAKAVNFGIVYGISP--- 817

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                   L + Q        + ++ ++  +       +            G    +   
Sbjct: 818 --FGLAAQLGIDQKVARTYIETYYDRYKGIKRFIDETLETVRLAGAVSTHFGRVRPI--- 872

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                   +     ++                                          +L
Sbjct: 873 ------PDIQSRNPNMRGFAERTAINTPLQGTAADLI---------------------KL 905

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNATKNGYDIVLT 627
               +  +                                 L   M              
Sbjct: 906 AMISLDREIRARG----------------------------LKSRMTLQVHD-------- 929

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
              E++ +   +    + TL    M     +   +P+ A+      +R
Sbjct: 930 ---ELLFDVVPSEAEEMQTLVQHEMENVAEF--SIPIVADIGLGDNWR 972


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/650 (15%), Positives = 193/650 (29%), Gaps = 119/650 (18%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDI 88
           +   A  ++ E        +      D L YL+DE     ++N      +   +  GIDI
Sbjct: 329 VLGYAL-YNKEQAFYISFEDALN-DQDFLNYLKDEKYSKYSYNIK--AQILSARWNGIDI 384

Query: 89  PSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
               +    + +          +K+ C   ++     + E    L  +          + 
Sbjct: 385 KGMNF-DLQLASYILNPSLKDEMKSICDYYDYDSVQYEEEVFGKLAKKHIPEIDLLARHT 443

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            ++A  +   +       +D E   +L++ L      E  +  +   +   G +ID+ ++
Sbjct: 444 VSKAKAIYDLKDEAIQRLKDEE-QFDLYQNL------ELPVTYILADMEYVGAKIDIHVL 496

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263
            +++    Q+ K+++EDI  L D    +      L   LF   G+     ++    T + 
Sbjct: 497 KEMEMDFEQQIKQIEEDIYMLADKEF-NISSPKQLGEVLFERLGLPNGKKTKTGYSTSQD 555

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           IL           LI      +  +   +  L E V +DG++         ++TGR S  
Sbjct: 556 ILEKIEGLHPIIPLIQKYRMLTKLSSTYVKGLQEQVFADGKIHTIYNQA-LTQTGRLSSI 614

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   I S+   LV  D + 
Sbjct: 615 EPNLQNIP------------------------VRQEEGKLIRKAFIPSHDY-LVTFDYSQ 649

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA +AG    I+AF   +DI+  T A  F    ++V+   R   K +   + Y  
Sbjct: 650 IELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVNFGIIYGM 709

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G            + +            FE++ + + +   + +          ++    
Sbjct: 710 G-----EFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYVSTVLNRKR 764

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +           +      + E           I       +   +M+ ++      L 
Sbjct: 765 YI---------PTINDKNFMVREQARRFAMN-SPIQGSGADILKLAMMKVNQLMKDKHLK 814

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
           S   L   D      Y                                            
Sbjct: 815 SEMILQVHDELIFDVYK------------------------------------------- 831

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 DE+           +  + S M +       +PLK +G  A  +
Sbjct: 832 ------DEL--------DEMMKLIKSAMVEAFQ--MDVPLKVDGAYASNW 865


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/669 (13%), Positives = 191/669 (28%), Gaps = 159/669 (23%)

Query: 32  LCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             A + D   V   +  ++   +   L ++   E +    +N   +    +      I  
Sbjct: 339 GIALS-DGNRVVYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALRNA---GIVI 394

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNF---SEHLTKMEEGKALIARFCKGSIDSPPYDC 147
               C                    L           +             +  +  Y  
Sbjct: 395 YNVSCDL-------------ALAEHLIHGGARTSFQSLLVSHG-------WAAVAARYVK 434

Query: 148 TRANHVQAWQLF----GEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQT 193
              +H            +Y    V    ++ + L+               E  L  +  +
Sbjct: 435 EWGHHALPLVQLPENPEKYFGELVALLPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFS 494

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  +D   ++ L+  + Q+   L E+I  L      + +    L   L+   GI  
Sbjct: 495 MERNGMPLDSKKLVSLEHSLEQDLAILTEEIYTLAGEPF-NIKSPKQLANILYNKLGITP 553

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312
           +D ++ T   +L          + +L   A        +  L   V+    R+  T +  
Sbjct: 554 LDKAKSTRAEVLEALREEHKIIEKLLMFRALEKLLSTYVKALPRQVAPQTQRIHATFEQM 613

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IAS 371
           G + TGR +      QN+P+                               +R    +  
Sbjct: 614 G-TATGRLACRDPNLQNIPK------------------------RSSRGLSLREAFLVPC 648

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                + AD + IE R+LA ++ ++  + AF  GEDI+  T ++ F+ P+D+V+K+QR  
Sbjct: 649 ETVSFLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRM- 707

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                                                      + +  +  +    Q   
Sbjct: 708 -------------------------------------------YAKTVNFGIIYGQQAYG 724

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
            +   K+  +  + + +A+  ++ GV +  ++     +  ++    +   RV +      
Sbjct: 725 LSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAASHDLKVTTMLGRERVID------ 778

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                   I   S R                                   +Q  + +++ 
Sbjct: 779 -NWDEHPGIRASSGR-----------------------------LAVNTRIQGSAAELIK 808

Query: 612 EGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
             M          K    ++L +HDE++ E PD     +  L    M    +    +PL 
Sbjct: 809 CAMLEISKEIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQEKMEAAMT--LTVPLV 866

Query: 665 AEGYEAKRY 673
                 K +
Sbjct: 867 VNILIGKNW 875


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/644 (14%), Positives = 172/644 (26%), Gaps = 130/644 (20%)

Query: 44  LWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D +E        L   L D     V HN+     +F +  G  I       T++ A  
Sbjct: 356 WFDPSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 413

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    L       L+         +G   +A       ++          +   + 
Sbjct: 414 VKPGRRSFDLDALSLEYLHRELAPAAAPDG--QLAFGADDGAEAEALMVQARAILDLGEA 471

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F         A          L D E     L   +   G   D + +  ++++ A   +
Sbjct: 472 FEGRLAEVGAADL--------LRDMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQ 523

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271
           +  ++          +      L+  LF    +                L  + + ++  
Sbjct: 524 QAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTD-- 580

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                ++L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P
Sbjct: 581 NELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP 638

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390
                                           +R   +   G + L+ AD + IE RV+A
Sbjct: 639 ------------------------VRTDEGRAIRRGFVVGEGFESLLTADYSQIELRVMA 674

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ +    +AF +GED++ T  A+ F+     V  E R   K M   L Y         
Sbjct: 675 HLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYG-----LSA 729

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L+++         + FE +     +   + D+         L G          
Sbjct: 730 FGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGR--------- 780

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +    +   E    +                             +L   R L  
Sbjct: 781 RRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI------------AMLNVDRALRE 828

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
           +D++                                       M           L VHD
Sbjct: 829 ADLRSR-------------------------------------ML----------LQVHD 841

Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           EIV E       +V  L    M+        +PL         +
Sbjct: 842 EIVLELAPGERAAVEELVRREMSTAVE--LRVPLGVSVGAGPDW 883


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/680 (15%), Positives = 193/680 (28%), Gaps = 149/680 (21%)

Query: 31  TLCAYAWDDEPVKLWDR---TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---- 83
              A    +           T   A+ + +   L +  +    H+               
Sbjct: 365 VGVAL-VGEHAGLHVSLDGDTPDPALVAAVRDALGEGGLAKAVHDLKRTLKALTAPTEGD 423

Query: 84  -LGIDIPSKRWICTSVLARTNGLP----SSLKNACLALNFSEH--LTKMEEGKALIARFC 136
            LG D      +   +L+     P    +SL+    A   +      +  + +A      
Sbjct: 424 GLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGTFDL 483

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIN 195
            G   +       A+ V+A  +      +   +      +RL  L + E  L  L   + 
Sbjct: 484 DGGQAAAERAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRL--LQELEIPLSRLLARME 541

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI----IRSSRQTYALRMYLFLITGI 251
             G  +D+D +  L+E          E               +      L+  LF    +
Sbjct: 542 LTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNM 601

Query: 252 DLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
                ++        +L+ +L  +    L ++L+ +R A+       +  L E V+ DGR
Sbjct: 602 PRTRKTKTGYSTDVDSLQDLLEQTQHPFL-ENLMAHRDATKLRQT--VEGLLETVAPDGR 658

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  T     A  TGR S      QN+P                            A   +
Sbjct: 659 IHTTYSQTAA-ATGRLSSLHPNLQNIP------------------------VRTEAGRRI 693

Query: 365 RSCIIASN----GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           R   +A         L+ AD + IE R++A ++ ++  I+AF  GED++    ++ F   
Sbjct: 694 RGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVD 753

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            D+V+ EQRA  K M   L Y        +      L                       
Sbjct: 754 PDEVTAEQRAKVKAMSYGLAYG-----LSSFGLSKQL----------------------- 785

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                           K+       + K +  +  GV    +D+                
Sbjct: 786 ----------------KISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIE-- 827

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                    RR    D+  D   L     +              
Sbjct: 828 ------------------------GRRRYLPDLSSDNRQLRDMAERA---------ALNA 854

Query: 601 IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTK 653
            +Q  + DI+   M +             ++L VHDE++ E P          L   M +
Sbjct: 855 PIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKERMGR 914

Query: 654 NPSWAKGLPLKAEGYEAKRY 673
                  +PL     + + +
Sbjct: 915 AAE--LSVPLDVHVGQGRSW 932


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 143/501 (28%), Gaps = 110/501 (21%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             D +  L  +   +   G RID+D + ++   +A+E   +   + +L      +     
Sbjct: 504 YYDIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEF-NLDSPK 562

Query: 240 ALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            L + LF   G+     +     T    LS           IL     +      +  L 
Sbjct: 563 QLSVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYRELAKMESTYIEALP 622

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
              + DG +         + TGR S      QN+P                         
Sbjct: 623 RMRAGDGLVHTHFNQTV-TTTGRLSSSDPNLQNIP------------------------V 657

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R C +    G   + AD + IE R+LA ++ ++  + AF +G D + +T A+
Sbjct: 658 RTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAAR 717

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F  P+++V+   R+  K +   + Y       +       L +            FE +
Sbjct: 718 VFGVPLEEVTPSMRSRAKAVNFGIVYGQ-----QAFGLAQNLGIGFKEAQEMIDRYFEAY 772

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
               +      ++         + G          R     +                  
Sbjct: 773 PGVRAFLDGTVEEVRACGYATTMFGR---------RRHIPELKAKNPAQRGF-------- 815

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                                                  G+ + +N              
Sbjct: 816 ---------------------------------------GERTAMNHPMQG---SAADIV 833

Query: 596 KLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
           K+  N VQ           +     G    +++ VHDE+    P +   +VG L    MT
Sbjct: 834 KMAMNEVQ-----------RRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVRDAMT 882

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
              +    +PL  +   AK +
Sbjct: 883 NVVT--LEVPLIVDVQSAKTW 901


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/631 (14%), Positives = 168/631 (26%), Gaps = 148/631 (23%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L D+++  + ++      L K                ++        S KN     
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---- 429

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  K    +  I      S        T               +     T  L+  
Sbjct: 430 ------FKEVLKETWIENIIIESAKIVINFITLYKQTI--------WELKDNKTFRLYSN 475

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           +      +  +  +   +   G  +D + + +L      E  KL+E+I  L+     +  
Sbjct: 476 I------DLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIG 528

Query: 237 QTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAIL 290
               L   LF    +          S  T   IL   +       DL+L     +     
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             ++L + + +      T     ++ TGR S      QN+P                   
Sbjct: 589 YTDSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQNVP------------------- 629

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                      + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+ 
Sbjct: 630 -----IRSSEGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHT 684

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  + FN    +++ E R   K +                    G+             
Sbjct: 685 QTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 718

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A +  +         K + A+++GV +  +      + 
Sbjct: 719 ------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASS 760

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                              R+     +               R 
Sbjct: 761 NGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAERA 789

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+   M N        K    +VL +HDE++ E P      +
Sbjct: 790 AINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEII 843

Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
              +  +M    S    +P+  E      + 
Sbjct: 844 TPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/461 (25%), Positives = 190/461 (41%), Gaps = 82/461 (17%)

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +          + +         A+  +  R  ++ ++  KL  + +    DGR RG   
Sbjct: 102 LPAAHTKAAVRQMLAGDIEG--AARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHL 159

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IADPLGLASDCVRS 366
            YGA  TGRW+G + Q QNLPR    +  L   +      +        PL + S  +R 
Sbjct: 160 VYGAG-TGRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRG 218

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA---------- 416
           C+I + G   + +D + IE R+ AW+A E+WKI+AF + +                    
Sbjct: 219 CLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLK 278

Query: 417 --FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             +  P+++ S+E+   GKV ELALG+ GG   F++MA+  G                  
Sbjct: 279 VPYAHPLNENSQERTPYGKVPELALGFGGGVGAFQSMAAIYG------------------ 320

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                 K+     + +K AWR  H  V+ LW+++ +     +  
Sbjct: 321 ---------------------MKVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISN 359

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS---------------- 578
            G + +       R+        + +VLPS R L Y+  + +                  
Sbjct: 360 PGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDT 416

Query: 579 ----YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                +N+ T +  R  TYGG L EN +QAI+RD+L   +      GY +V+ VHDE ++
Sbjct: 417 ITFMSVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALA 476

Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E       SV    S+M   P+WA GLP+ A G+   RYRK
Sbjct: 477 EIRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/664 (13%), Positives = 173/664 (26%), Gaps = 145/664 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGID 87
            I   + + +          +   +   +L        + V   +  +        L  +
Sbjct: 342 DIHSLSISKNKNEAFYIKEEQAKPLLEKILT----TDTLKV---ATADYKSLLYYSLRNE 394

Query: 88  IPSKR-WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           I          V A+    P             ++  +    K L +         P   
Sbjct: 395 IEISAEVFDV-VQAQFVANPG-----------EKNTIESLSEKFLGSSIPAFEKKKPLPS 442

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----LSDGERDLWLLDQTINDRGYRID 202
               + VQ       +    V                  D +  L  +   +   G  I+
Sbjct: 443 ENEEDLVQEISTARAHSCFRVSEFLLEELERKELLNVFHDIDNKLTPVLAAMEYEGVHIN 502

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
                + ++ +  +  +L   + K +   + +      + + LF    + +   ++    
Sbjct: 503 KAFFSEYEKELQTKLDELQASVDKFSKEPV-NLNSPKQVGVLLFEELELPVGKKTKTGYS 561

Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316
           T  S+L             LIL            +  + E ++   G++        A  
Sbjct: 562 TDSSVLEDLAAKGLSEVPALILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVA-A 620

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                VR   IA  GK L
Sbjct: 621 TGRLSSNHPNLQNIP------------------------IRSELGRRVRKGFIAGPGKIL 656

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + +E R+LA  + +   I AF  G DI+  T ++    P+++V    R+  K + 
Sbjct: 657 LAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTASEIMGVPVEEVGSNDRSKAKAVN 716

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G      +  +K                             
Sbjct: 717 FG--------------LMYGQSSFGLAAALK----------------------------- 733

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  +   V      L E                              
Sbjct: 734 -IPRKEAKEYITNYFERFSSVKGYLDHLKEECEKTGYAITLK------------------ 774

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    R+   +D+        T  +   R          + +Q  + DI+   M N
Sbjct: 775 --------GRKRYLADIHSTN---RTIKANAERVAI------NSPIQGTAADIIKLAMIN 817

Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYE 669
             K          ++L VHDE++ E  ++    + T+    M K  S    +PL  +   
Sbjct: 818 IQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILKDGMEKVVS--LSVPLDVDMGV 875

Query: 670 AKRY 673
              +
Sbjct: 876 GVNW 879


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/678 (12%), Positives = 186/678 (27%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     +  +                           
Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R+  K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E      ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/527 (16%), Positives = 141/527 (26%), Gaps = 127/527 (24%)

Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
              T  L + L P  D          E+ L  +   +  RG R+D + +  L    A   
Sbjct: 503 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 562

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQ 272
             L+ +I +       S R    L   L+   G+     ++      T  + L       
Sbjct: 563 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 621

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L            L+ L   V+   GRL  T     A  TGR S      QN+P
Sbjct: 622 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQT-AVATGRLSSLNPNLQNIP 680

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G  L+ AD + IE R+LA 
Sbjct: 681 ------------------------IRSEMGREIRKGFIADKGYCLISADYSQIELRLLAH 716

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA +    +AF  G DI+  T A+        V+  QR   K +                
Sbjct: 717 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVN--------------F 762

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   + +  +         + + 
Sbjct: 763 GVLYGMS------------------------------AHRLSNELGISYVEAAGFIETYF 792

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             + G+        E                                       RR    
Sbjct: 793 NTYPGIRGYIDRTLEFGRTQGYVETMY--------------------------GRRRYVP 826

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627
               + +  N    +      Y        +Q  + DI+   M    +     G  ++L 
Sbjct: 827 ----ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRELEALGGRLLLQ 877

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+     V  L   +M         +PL  E      +
Sbjct: 878 VHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 922


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/527 (16%), Positives = 141/527 (26%), Gaps = 127/527 (24%)

Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
              T  L + L P  D          E+ L  +   +  RG R+D + +  L    A   
Sbjct: 500 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 559

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQ 272
             L+ +I +       S R    L   L+   G+     ++      T  + L       
Sbjct: 560 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 618

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
               L+L            L+ L   V+   GRL  T     A  TGR S      QN+P
Sbjct: 619 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQT-AVATGRLSSLNPNLQNIP 677

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                                           +R   IA  G  L+ AD + IE R+LA 
Sbjct: 678 ------------------------IRSEMGREIRKGFIADKGYCLISADYSQIELRLLAH 713

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           IA +    +AF  G DI+  T A+        V+  QR   K +                
Sbjct: 714 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVN--------------F 759

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G+                                   + +  +         + + 
Sbjct: 760 GVLYGMS------------------------------AHRLSNELGISYVEAAGFIETYF 789

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             + G+        E                                       RR    
Sbjct: 790 NTYPGIRGYIDRTLEFGRTQGYVETMY--------------------------GRRRYVP 823

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627
               + +  N    +      Y        +Q  + DI+   M    +     G  ++L 
Sbjct: 824 ----ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRELEALGGRLLLQ 874

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+     V  L   +M         +PL  E      +
Sbjct: 875 VHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 919


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 358 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 417

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 418 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 475

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 476 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 524

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 525 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 583

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 584 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 640

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 641 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 675

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 676 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 735

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 736 SKIKAMNYG--------------LAYGLS------------------------------A 751

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 752 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 800

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 801 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 836

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 837 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 894

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 895 LTVSIGVGRSW 905


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 363 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 422

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 423 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 480

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 481 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 529

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 530 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 588

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 589 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 645

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 646 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 680

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 681 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 740

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 741 SKIKAMNYG--------------LAYGLS------------------------------A 756

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 757 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 805

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 806 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 841

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 842 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 899

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 900 LTVSIGVGRSW 910


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/601 (15%), Positives = 169/601 (28%), Gaps = 142/601 (23%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +                           
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205
             +  Q      +  ++    L   L  +       + E  +  +   +   G  +DL +
Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262
           + +LQ     + +    D      G   +      L++ LF   G+     ++    T  
Sbjct: 527 LTELQSQFGDQIRDA-ADAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585

Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L              +L     +   +  ++ L +AV++DGR+  T     A  TGR 
Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            AS  +R   +  +G  +L+ A
Sbjct: 644 SSTEPNLQNIP------------------------IRTDASRRIRDAFVVGDGYAELMTA 679

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M    
Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           GL                                   + + K+ 
Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                    A+ A+  GV    + + E           +                     
Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 RR    ++               R            +Q  + DI+   M    K
Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L VHDE++ E        V  L    M         +PL+      + 
Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898

Query: 673 Y 673
           +
Sbjct: 899 W 899


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/599 (14%), Positives = 156/599 (26%), Gaps = 129/599 (21%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLK----NACLALNFSEHLTKMEEGKALIARFCKGSID 141
           +D    R   T V A       S      +       +                     D
Sbjct: 448 LDADPARLFDTVVAAYLLDSVRS-DFADAHLAETYLHAALP-------------AAAGED 493

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             P D   A    AW               +  + +   +  E  L  +  ++   G  +
Sbjct: 494 GAPADAPSAAARSAWLARILREPLAAALEAQGAEDIF--TKIEMPLVRVLASMERAGMYV 551

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMS- 257
           D   +    E ++ +  +L + I +L  G   +      L   LF   G+          
Sbjct: 552 DPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQR 611

Query: 258 --EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L           LIL     +      L+TL     +DGR+  T      +
Sbjct: 612 GYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTYLDTLGALRETDGRVHTTYNQT-IT 670

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN+P                                V+       G  
Sbjct: 671 ATGRLSSSNPNLQNIP------------------------TRSELGHAVKKAFSVEEGSV 706

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            V  D + IE R+LA ++G++  + AF  GED +  T A+ F  P+++V+ + R+  K +
Sbjct: 707 FVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAV 766

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              + Y       +       LD+          + F  +    ++         +    
Sbjct: 767 NFGIVYGQ-----QAYGLSQALDIPMAEAREMIDAYFRAYPGVRTYLDETVAFAKQTGYA 821

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           + + G    + +     +             G    +      SA  +  +         
Sbjct: 822 ETMYGRRRPIPEL----RVPAQRMF------GERTAMNHPMQGSAADIIKI--------- 862

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                                            R RT             +  ++     
Sbjct: 863 --------------------------AMVRVAERLRTE----------GFAAKMI----L 882

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                         DE+  E P     + V  +   M         +PL A+    + +
Sbjct: 883 QVH-----------DELDFECPVGEVDALVAMVREEMEGVAQ--LRVPLIADASVGETW 928


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/639 (14%), Positives = 173/639 (27%), Gaps = 151/639 (23%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                   +   L D+++  + ++      L K                ++        S
Sbjct: 369 NNDWFSDIIFNLLADKSIKKITYSLK---PLLKFYANQSHKITAIEDLELMQYALSAGLS 425

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            KN        E           I    K   +           ++  + F  Y   D  
Sbjct: 426 QKNLFEE-ALKEDNI--------INESAKIVANFISLYKQTILALKDNKAFRLYSDID-- 474

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
                             +  +   +   G ++D + + +L      E   L+E+I  L+
Sbjct: 475 ----------------LPICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALS 518

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNIT-QLAKDLILNRL 282
                +      L   LF    +     +       T   IL   +       DL+L   
Sbjct: 519 GTKF-NIGSPKQLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWR 577

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
             +       ++L + + +  R   T     ++ TGR S      QN+P           
Sbjct: 578 QLTKFKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIP----------- 626

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                              + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF
Sbjct: 627 -------------IRSREGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAF 673

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            N +DI+  T  + FN    +++ E R   K +                    G+     
Sbjct: 674 INKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---- 715

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A +  +  +      K + A+++GV +  +
Sbjct: 716 --------------------------AFGLAKQLNVSNSEASEYIKKYFAEYKGVQEYME 749

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                                             + +++    R+     +         
Sbjct: 750 QTKAFA--------------------------SSNGYVINFFGRKCFIPLIHDKK----- 778

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSET 636
                 R            +Q  + DI+   M N        K    +VL +HDE++ E 
Sbjct: 779 LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEV 832

Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           P+     V   +  +M    S    +P+  E      + 
Sbjct: 833 PEDEVELVTPIIKKIMEN--STNMDVPIITEIRAGNNWM 869


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/636 (15%), Positives = 175/636 (27%), Gaps = 155/636 (24%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           L  +L+    + VA     +           + L +     R     + A       S  
Sbjct: 419 LCAWLQSARRLVVA-----DLKALLTAAPCWRNLPLGETPPRCFDLGLAAYLLNPEES-- 471

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                  +                  +      P     A    A     E  +   +  
Sbjct: 472 ----DYGWP-------------RLAARWGAALKPEGGGPARLALAMAEALE-DRLVRDGL 513

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           REL+  L      E  L  +   +  RG  ID          +  E  +L  ++     G
Sbjct: 514 RELYNTL------ELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYAAA-G 566

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286
              + R    L   LF    +     ++     T +  L          D IL       
Sbjct: 567 TTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKLAGRHAVVDSILQFRKLEK 626

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L+ L   V   GR+  T     A+ TGR S      QN+P               
Sbjct: 627 MRSTYLDPLPRLVDGQGRIHTTFNQ-KATATGRLSSSNPNLQNIP--------------- 670

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                      G     +R+C IA  G+ LV AD + +E RVLA ++ +   + AF  GE
Sbjct: 671 ---------VRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGE 721

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T A  ++    +VS +QR   K +                    G+         
Sbjct: 722 DIHARTAALIYDLQAGEVSPDQRRNAKTINFG--------------LIYGMG-------- 759

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                   +   + K+     +     +  +  G+   ++++  
Sbjct: 760 ----------------------AQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEA 797

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  RR +  D+         A + 
Sbjct: 798 TAKRQGYVTTLG--------------------------GRRRLLPDILSAN---GQAFAL 828

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDT- 639
             R+          ++Q  + DI+   M          +    ++L VHDE++ ETP+  
Sbjct: 829 ARRQAI------NTVIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEAT 882

Query: 640 PYFSVGTLCSLMTKNPSW--AKGLPLKAEGYEAKRY 673
              +   + +LM+          +PL  +      +
Sbjct: 883 AEAAGARVAALMSSVAPGGETLSVPLVVDWGVGHDW 918


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 99/697 (14%), Positives = 191/697 (27%), Gaps = 175/697 (25%)

Query: 18  KVGVWAYAEQAVITLC------AYAWDD--------EPVKLWDR-------------TEQ 50
           K+ +  +A++A I          Y  D+            +                T  
Sbjct: 311 KIELENFAKEAEIVGIFGIYLLQYKGDNLALILSLQNKSYIIKISNTTNDLFSYNTKTNN 370

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           S     +   L D+++  + ++      L K                             
Sbjct: 371 SWFSDIISNLLTDKSIKKITYSLK---PLLKFYANQSHAITAIED--------------- 412

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                         +  G +    F +   ++   +    +          Y ++ +E  
Sbjct: 413 -------LELIQYALSAGLSQKNLFEEAQKETVIENIINESAKIVINFISLYKQKILELK 465

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                RL    D    +  +   +   G ++D + + +L      E  +L+E+I  L+  
Sbjct: 466 DNKAFRLYSNID--LPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGT 523

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDLILNRLAS 284
              +      L   LF    +     S  T      ++ +   S       DL+L     
Sbjct: 524 KF-NIGAPKQLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQL 582

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +       ++L + + +  R   T     ++ TGR S      QN+P             
Sbjct: 583 TKLKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVP------------- 629

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                            + +R   I   G KL+ AD + IE R+L+ IA  D   +AF N
Sbjct: 630 -----------IRSSEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTN 678

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            +DI+  T  + FN P DK++ + R   K +                    G+       
Sbjct: 679 KDDIHTQTACQIFNLPKDKLTSKHRRKAKAIN--------------FGIIYGIS------ 718

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       A +  +  +      K + A+++GV +  +  
Sbjct: 719 ------------------------AFGLAQQLNVTNSEAAEYIKKYFAEYKGVQEYIEQT 754

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                           + ++     R+     +           
Sbjct: 755 KAFV--------------------------SSNGYVTNFFGRKCFLPSIHNKK-----LK 783

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638
               R            +Q  + DI+   M N        K    +VL +HDE++ E P 
Sbjct: 784 QFAERAAINAP------IQGTNADIIKIAMINLDQEIEKLKLKTRLVLQIHDELLFEAPT 837

Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
                V   +  +M    S    +P+  E      + 
Sbjct: 838 DEIELVIPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 90/559 (16%), Positives = 146/559 (26%), Gaps = 123/559 (22%)

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----LSDGER 185
           L A     +  + P    R    +                REL   L         + E+
Sbjct: 501 LYAYLLDPANTNMPVVAKRYLDREWPADAPTRAAITGHLLRELPPLLDDARRKMYDEMEK 560

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +  RG ++D D +  L          L+  I +         R    L   L
Sbjct: 561 PLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEFH-IRSPKQLETVL 619

Query: 246 FLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           +    +     ++      T  S L           L+L            L+ +   V+
Sbjct: 620 YDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPNLVN 679

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GRL  T     A  TGR S      QN+P                            
Sbjct: 680 PHTGRLHTTFAQT-AVATGRLSSLNPNLQNIP------------------------IRSE 714

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+    
Sbjct: 715 LGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGL 774

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
               V   QR   K +                    G+   + S +              
Sbjct: 775 DEATVDANQRRAAKTVN--------------FGVLYGMSAHRLSND-------------- 806

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +         + + A + G+ +                    
Sbjct: 807 ----------------LGIPYAEAATFIEIYFATYPGIRRY------------------- 831

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                      +   +   ++     RR     +         A  +L            
Sbjct: 832 -------INHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERL---------AYN 875

Query: 600 NIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
             +Q  + DI+   M          G  ++L VHDE++ E P      V  L   +M   
Sbjct: 876 MPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV 935

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL  E      +
Sbjct: 936 VQ--LKVPLAVEVGTGPNW 952


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/678 (12%), Positives = 189/678 (27%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCKEIFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+     +   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIEF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E                        N +       E   ++ +    L+       
Sbjct: 440 NREDEF-----------------LRIKEVNIMPNLYKVLEEKIKEQDMEELLY------- 475

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 476 KVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R   K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E      ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAIEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 101/335 (30%), Positives = 152/335 (45%), Gaps = 20/335 (5%)

Query: 6   IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58
           IDIE  S   + K G + Y  AE   I + AY+ D  PV   D T+    P         
Sbjct: 3   IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V   A N+ FER    K     +P + WICT V +   GLP+SL      L  
Sbjct: 63  IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174
                K + GK LI  F   CK +  +         +  + WQ F +YC RDVE    + 
Sbjct: 123 --QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIA 180

Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q + +L +   +     +
Sbjct: 181 NKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQ--ITDL 238

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      L  +L    G+D+ ++ + T++  L  +     AK ++  RL  S +++ K 
Sbjct: 239 ENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKTSVKKY 296

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           N + + + SD R+RG  QFYGA  TGRW+G   Q 
Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQL 330


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 91/664 (13%), Positives = 175/664 (26%), Gaps = 149/664 (22%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            L      A            A ++  V+  D  E                   +     
Sbjct: 318 DLFSTPEVAVIHDFERV---IAINEGYVE-VDFKEIEEFL---------PEKGKI---YT 361

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
           F+       +G  + +  +I  SV                       L K    K ++ +
Sbjct: 362 FDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP----------------LQKDYSSKDILKK 405

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      D          ++  E  K  +E   E           E  L  +   +
Sbjct: 406 RLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYE---------SIEHPLTFVLYKM 456

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
             RG   D + +    + + ++ K++++ I ++      +      L   LF    +  +
Sbjct: 457 EKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKF-NLNSPKQLSKILFEKLKLKPL 515

Query: 255 ----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                     ++++ + +       +L+L     +      +  + + +  DGR+R T  
Sbjct: 516 KKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKHMDEDGRVRTTFI 575

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             G + TGR S      QNLP                             S  +R  + A
Sbjct: 576 QTG-TATGRLSSAEPNLQNLP------------------------VSDEISKKIRYAVTA 610

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  LV AD + IE R+LA ++ ++  ++A+  G DI+  T +  F    ++V +  R 
Sbjct: 611 PAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLRR 670

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           I K +   + Y               L +            FE + + + +      +  
Sbjct: 671 IAKTVNFGIIYGMSPHGLSE-----RLGISVEEAEKYIDRYFEKFPKVKEYIENTLREAY 725

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           E      + G    L           +    K++                          
Sbjct: 726 EKGYVKTIFGRKRPL---------PELKSSNKNIRSFGERAAVNATIQGTAADI------ 770

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                           +L    +      L                              
Sbjct: 771 ---------------MKLAMVKLYKKLEKLGAY--------------------------- 788

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
              M           L VHDEIV E  +     +  +    M     +   +PL  +   
Sbjct: 789 ---MV----------LQVHDEIVIEALEEKTEEIMKIVKETMENVVEF--SVPLTVDVKV 833

Query: 670 AKRY 673
            K +
Sbjct: 834 GKHW 837


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 86/649 (13%), Positives = 178/649 (27%), Gaps = 149/649 (22%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
            A+  +       T        +L  L+D  +      +  +     K +   G ++   
Sbjct: 359 LAFAGKHYVFCPETAGK---EAVLSLLQDPAISK----AAADPKELYKYMMGQGKNLQGI 411

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                ++        +S               +              +        T A 
Sbjct: 412 T-DDPALAGYLYEPGAS------GYGIQALGEEFL-----------PAASGEGAQDTAAL 453

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
                +   E           L++      D E  L      +   G  +D  ++ ++  
Sbjct: 454 VPVLREKLEERGLT------RLYE------DIELPLTENLAEMEFTGIAVDQAMLDEVTG 501

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268
            + ++ + L++       G   +      L + LF   G+ ++  ++    T  S+L   
Sbjct: 502 EMTKKVQALEQQAWDQA-GEQFNLNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEAL 560

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
                  + +++    S      L  L   ++   GR+        A+ TGR S      
Sbjct: 561 QGEHPLIETLISYRQLSKLLSTYLLGLHPLINPATGRIHTHFNQ-MATVTGRLSSTEPNL 619

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386
           QN+P                                +R   +   G   L+  D + +E 
Sbjct: 620 QNIP------------------------TRTEVGKRMREMFVPGEGYDLLMSCDYSQVEL 655

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RV+A IA ++  + +F +G+D++  T ++ F  P+D+V+   R+  K +   + Y     
Sbjct: 656 RVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYG---- 711

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L + +        S F  +   +++    + +  E    + L G      
Sbjct: 712 -ISDFGLARQLGVPRGEAAQYIESYFARYTGVKAYMEREKQKAREMGYVETLFGR----- 765

Query: 507 KKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               R     +     +         +      +A  +  V  L +              
Sbjct: 766 ----RRYLPDINAKNFNRRSFAERTAINTPIQGTAADIIKVAMLKVA------------- 808

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625
           R L  + VK                                       +         +V
Sbjct: 809 RNLKEARVKSRV------------------------------------LLQVHDE---LV 829

Query: 626 LTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L        E P     +VG +    M      A  +PL A+    K +
Sbjct: 830 L--------EIPAAEQETVGKIVKETMEHAVDLA--VPLVADVAVGKNW 868


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/641 (15%), Positives = 177/641 (27%), Gaps = 133/641 (20%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
             +  + L  +L DET   V H+S    + F    G  +       T + A         
Sbjct: 370 DESDEAALAGWLADETRPKVLHDSKPAVLAFAAH-GWTLAGIA-RDTQIAAYLARPDQRS 427

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             L +  L     E           +     G       +  +   + A          D
Sbjct: 428 YDLTDLALRYLHRELRV-DVPDDGQLTLDGLGGD----GEAEQNLMLHARATLDLADAID 482

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E +R+  +    ++  E  L  +   +   G   D D + +L+   A E K   +    
Sbjct: 483 AELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAYA 542

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLA 283
           +      +      L+  LF    +           T    L           L      
Sbjct: 543 VIGREF-NLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHLLRH 601

Query: 284 ---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +   +   ++ L ++VS DGR+  T     A  TGR S      QN+P         
Sbjct: 602 RDVARLKST--VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP--------- 649

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G   L+ AD + IE R++A ++G++  I
Sbjct: 650 ---------------IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALI 694

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF +G D +  T +  F   + +V+ +QR   K M                    GL  
Sbjct: 695 EAFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNY--------------GLAYGLS- 739

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            + +  +       + + + A   GV  
Sbjct: 740 -----------------------------AFGLSQQLGITAEEARGLMEVYFAGFGGVRD 770

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +++             +                           RR    D+  D   
Sbjct: 771 YLQEVVARARQDGYTSTIL--------------------------GRRRYLPDLVSDNRQ 804

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDEIV 633
                 ++              +Q  + DI+   M +        G    ++L VHDE+V
Sbjct: 805 RREMAERM---------ALNAPIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELV 855

Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            E       ++  L    M         +PL+    E + +
Sbjct: 856 FEVAPGERATLEELVRREMGGAYP--LSVPLEVSVGEGRDW 894


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 86/678 (12%), Positives = 186/678 (27%), Gaps = 149/678 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCKEIFESK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     +  +                           
Sbjct: 440 NREDEILKIKEVNMMPKLYKVLEEKIKEQDMEELLYKV---------------------- 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R   K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            + +   + ++  E    + ++           R   + V    K +        +    
Sbjct: 745 VKLYLENIVEEAVEKGYVNTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  +  + +              R+L   + K                      
Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
                       I+                     ++          +  L    M +  
Sbjct: 823 ------------II----LQVHDE-----------LILNVYKDELEKIKALVKKEMEQVL 855

Query: 656 SWAKGLPLKAEGYEAKRY 673
               G  L  +      +
Sbjct: 856 ELKVG--LDVDINIGNNW 871


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 207/716 (28%), Gaps = 156/716 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMP 54
           +  D ET       K    A  A +A IT  +++  +          +         A+ 
Sbjct: 23  VAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALW 82

Query: 55  SDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
           + L +       V+C+AHN  FE +   K  GI +  +    T   A+      ++K+  
Sbjct: 83  AFLKESIFESHDVICIAHNLSFEAMFLYKQ-GIVVQ-EPCYDTIAAAQL-----TMKSKW 135

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                 +   K+    +L                    + Q ++    Y   D + T  L
Sbjct: 136 EFRGLHDSGLKLLA-TSLFGADMPSFSSVTDGRHFDEMNPQEYETVR-YACADSDYTLCL 193

Query: 174 FKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           + +     D             E    ++   +   G  +D   +L+ Q     +   L 
Sbjct: 194 YYKFNNWFDRFLPAHRIITEQLESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALK 253

Query: 222 EDIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVDMSEGTLK-------SILSHSNITQL 273
            +I +LT G+   +   T A + YL+   G+ ++  +E   +        +L        
Sbjct: 254 AEINELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQHR 313

Query: 274 AKDLIL-----NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327
            + + L                 ++   + V+S  GR+   L   G + TGRW+      
Sbjct: 314 PELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLG-TDTGRWAARNPNM 372

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN PR+                              +R+ I+A  G+ ++  D + IE R
Sbjct: 373 QNAPRKTNDPIG------------------------IRNFIVAPPGQIIMSLDFSQIELR 408

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRAIGKVMELALG 440
           V A+   +   ++ + +G DI+  T +  F  P +          KE R I K     + 
Sbjct: 409 VGAFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVF 468

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y    +  +                                      +   F        
Sbjct: 469 YGLFPRGLQ--------------------------------------KTLRFKAGLDTSF 490

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
             C+ +    ++ + G+    ++     A                               
Sbjct: 491 ERCKEIIDNLKSGYSGLTTWQEETKARAAKTCY--------------------------A 524

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617
                RR     +          +S   +            VQ  + DIL          
Sbjct: 525 ETWMGRRRYLPHM---------LSSDWGKHSFAERCALNTPVQGTAADILKAACARIVAG 575

Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670
              +     +L +HDE+V   P+         +   M + P     +P+ AE    
Sbjct: 576 FPERPWLKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPIVAEASAG 631


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 104/660 (15%), Positives = 189/660 (28%), Gaps = 145/660 (21%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART 102
               A+ + + + L +  +    H+                LG D      +   +L+  
Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443

Query: 103 NGLP----SSLKNACLALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
              P    +SL+    A   +      +  + +A       G   +       A+ V+A 
Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503

Query: 157 QLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            +      +   +      +RL  L + E  L  L   +   G  +D+D +  L+E    
Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRL--LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTA 561

Query: 216 ERKKLDEDIVKLTDGI----IRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSI 264
                 E               +      L+  LF    +     ++        +L+ +
Sbjct: 562 AADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDL 621

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L  +    L ++L+ +R A+       +  L E V+ D R+  T     A  TGR S   
Sbjct: 622 LEQTRHPFL-ENLMAHRDATKLRQT--VEGLLETVAPDDRIHTTYSQTAA-ATGRLSSLH 677

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN----GKKLVVAD 380
              QN+P                            A   +R   +A         L+ AD
Sbjct: 678 PNLQNIP------------------------VRTEAGRRIREVFVADEVAGEQAVLLSAD 713

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ ++  I+AF  GED++    ++ F    D+V+ EQRA  K M   L 
Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y        +      L                                       K+  
Sbjct: 774 YG-----LSSFGLSKQL---------------------------------------KISV 789

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                + K +  +  GV    +D+                                    
Sbjct: 790 DEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIE---------------------- 827

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619
                RR    D+  D   L     +               +Q  + DI+   M +    
Sbjct: 828 ----GRRRYLPDLSSDNRQLRDMAERA---------ALNAPIQGSAADIIKRAMLDVQAG 874

Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE++ E P          L   M +       +PL       + +
Sbjct: 875 LEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAAE--LSVPLDVHVGRGRSW 932


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 201/691 (29%), Gaps = 147/691 (21%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSD----- 56
           ID ET       K  +  Y + A I         + +++ +          +  +     
Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDLYF-PLNHGGLLSKNIDKNT 402

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113
           L++++ +  V  +++N      L    LG       ++   +        + +       
Sbjct: 403 LIKFISELDVKFISYNFK---TLL--NLGFTFK-SMYMDMMIAYHLISSQTKMDVIIPIT 456

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              N      K   GKA I     G              +    ++ E      +   EL
Sbjct: 457 EYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKI----GLGILAIYDEINHILHK--EEL 510

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +  L      E  L  +   +  +G +ID+         + +E  K+++ I +       
Sbjct: 511 YDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAGEEF- 566

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGSAI 289
           +      L   LF+   +     ++    T   +L            L+L+    +    
Sbjct: 567 NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 626

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++TL   V S+ R+  +    G + TGR S      QN+P                  
Sbjct: 627 TYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIP------------------ 667

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D++
Sbjct: 668 ------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLH 721

Query: 410 VTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
             T  + FN    D V++EQR I                                     
Sbjct: 722 DLTARRIFNLSDSDDVTREQRTIA------------------------------------ 745

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +  +  +         A + K+         K +  ++  V    K++ E  
Sbjct: 746 --------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFG 797

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                R+   S +        T  +Q  
Sbjct: 798 EEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKAQAE 828

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFS 643
           R           ++Q  + ++L + M         K+   ++L VHDE++ E  ++    
Sbjct: 829 RMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEESSVEK 882

Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +M       + + L       K +
Sbjct: 883 YSEILADIMKNTVKL-EDVNLNININIGKNW 912


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 201/691 (29%), Gaps = 147/691 (21%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSD----- 56
           ID ET       K  +  Y + A I         + +++ +          +  +     
Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDLYF-PLNHGGLLSKNIDKNT 402

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---AC 113
           L++++ +  V  +++N      L    LG       ++   +        + +       
Sbjct: 403 LIKFIAELDVKFISYNFK---TLL--NLGFTFK-SMYMDMMIAYHLISSQTKMDVFIPIT 456

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
              N      K   GKA I     G              +    ++ E      +   EL
Sbjct: 457 EYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKI----GLGILAIYDEINHILHK--EEL 510

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +  L      E  L  +   +  +G +ID+         + +E  K+++ I +       
Sbjct: 511 YDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAGEEF- 566

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGSAI 289
           +      L   LF+   +     ++    T   +L            L+L+    +    
Sbjct: 567 NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 626

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++TL   V S+ R+  +    G + TGR S      QN+P                  
Sbjct: 627 TYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIP------------------ 667

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D++
Sbjct: 668 ------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLH 721

Query: 410 VTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
             T  + FN    D V++EQR I                                     
Sbjct: 722 DLTARRIFNLSDSDDVTREQRTIA------------------------------------ 745

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +  +  +         A + K+         K +  ++  V    K++ E  
Sbjct: 746 --------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFG 797

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                R+   S +        T  +Q  
Sbjct: 798 EEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKAQAE 828

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFS 643
           R           ++Q  + ++L + M         K+   ++L VHDE++ E  ++    
Sbjct: 829 RMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEESSVEK 882

Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +M       + + L       K +
Sbjct: 883 YSEILADIMKNTVKL-EDVNLNININIGKNW 912


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/511 (16%), Positives = 147/511 (28%), Gaps = 120/511 (23%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E+ L  + Q IN  G  +D   +  L   +  E   L+  I         +     
Sbjct: 390 YVKIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAGREF-NINSPK 448

Query: 240 ALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
            +   LF   G+   +  +       T +S L            IL            ++
Sbjct: 449 QMGEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYRELQKLVSTYID 508

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L   VS+DGRLR T    GA  TGR +      QN+P                      
Sbjct: 509 NLPPLVSADGRLRTTFVQTGA-ATGRMASQNPNLQNIP---------------------- 545

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                  S  +R   +AS G  +V  D + IE R+ A ++ ++  ++ FA GED++    
Sbjct: 546 --IRTEESKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVA 603

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            + F    ++V++E R   KV+   + Y  G    +                        
Sbjct: 604 VRVFGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNL--------------------- 642

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                 +       +    A+      + +  ++          
Sbjct: 643 ---------------------GEGTSREEAQEFFNAYFNTFTRLAEYLEETKAFARKNGY 681

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                           RR  +  ++    ++    +Q  R    
Sbjct: 682 TETLF--------------------------GRRRHFPGMQSTAPFIR---AQAERMAIN 712

Query: 594 GGKLTENIVQAISRDILCEGMKNATK--------NGYDIVLTVHDEIVSETPDTPYF-SV 644
                   VQ  + D +   M    +        +   I+L VHDE++ E  +      +
Sbjct: 713 AP------VQGTAADAMRVAMNLVYQYIQTEKKTDDVHILLQVHDELLFEIKNNVLETEI 766

Query: 645 GTLCSLMTKNPSWAK--GLPLKAEGYEAKRY 673
             L  LM          G+P+KA+      +
Sbjct: 767 PKLVELMQGVLEGYDTSGVPIKADVAVGPNW 797


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/637 (14%), Positives = 171/637 (26%), Gaps = 132/637 (20%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111
           + L  +  D T   V H+            G  +       T++ A           L +
Sbjct: 375 AALAAWFADPTPTKVGHDLKTAVNALT-ARGWPVGGVAC-DTALAAYLALPGQQTFDLGD 432

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       +                +        +  +   +   +  +      +
Sbjct: 433 LVQRYLHRTLDPEHSTNAGQ-QLSLIPEENEGAQTEQDSRDMVRARAIIDLAEA---LEQ 488

Query: 172 ELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            L          D E  +  +   +   G  +D+D +  LQ   A E     +       
Sbjct: 489 HLDSLGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIG 548

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDL--ILNRLAS 284
             + +      L++ LF   G+     ++    T    L   +       L  +L     
Sbjct: 549 REV-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRDV 607

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +   +  +  L ++V  DGR+  T Q   A  TGR S      QN+P             
Sbjct: 608 TRLKVT-VEGLRKSVGDDGRIHTTFQQTVA-ATGRLSSTEPNLQNIP------------- 652

Query: 345 QALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +       L+ AD + IE R++A ++ ++  I+AF 
Sbjct: 653 -----------IRTDEGRLIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIEAFR 701

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +GED++     KAF  P ++V+ E R   K M   L                GL      
Sbjct: 702 SGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGL--------------AYGLS----- 742

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        + + K+     +   +A+ ++  GV    +D
Sbjct: 743 -------------------------AYGLSGQLKISVDEAKEQMEAYFSRFGGVRDYLRD 777

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                                                     RR    D+  D       
Sbjct: 778 TVARARKDGYTETIF--------------------------GRRRYVPDLNSDNRQKRAM 811

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637
                R            +Q  + D++   M N  +          ++L VHDE+V E  
Sbjct: 812 A---ERIA------LNAPIQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHDELVCEVV 862

Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +   L   M      A  +PL+        +
Sbjct: 863 ADELAVMTELLKQEMGGAYPLA--VPLEVSVGSGANW 897


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/572 (15%), Positives = 165/572 (28%), Gaps = 116/572 (20%)

Query: 108 SLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           +LK+                  + L A +               +     +        D
Sbjct: 379 NLKDDAAICGYLLNTSASDYAIEKLCAEYGVHYYSENGEFADLLSIELLIK--KLRSVID 436

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            E   EL +++      E  L  +  ++ D G  ID   V      + +  ++  + +V 
Sbjct: 437 KEGMTELLEKI------ELPLTEVLASMEDIGICIDKQGVEDFGTYLTEMIEE-TQQMVY 489

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLA 283
              G   +      L   LF   G+     ++    T   +L          D +L    
Sbjct: 490 DDAGHSFNIASPKQLGTVLFEEMGLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQ 549

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            +      +  L + ++ DGR+    +    +RTGR S      QN+P            
Sbjct: 550 YTKLNSTYVVGLLDKIADDGRIHTWFRQTE-TRTGRISSTEPNMQNIP------------ 596

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A  G+KLV AD + IE RV+A + G+   I+AF 
Sbjct: 597 ------------VRTELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFN 644

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +GEDI+ +T A+ F+ P   V+ E R+  K +   + Y  G       +    +      
Sbjct: 645 SGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIG-----AFSLAKDIGTSVAK 699

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                      +E+         D   +      + G            +   +    K 
Sbjct: 700 AKKYINDYLAKYEKVNEFMETTVDNAFKDGYVTTMFGRK---------RRIPELSSSNKM 750

Query: 524 LTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           +        +      +A  +  +  + +                  Y+ +K +      
Sbjct: 751 MQAAGKRIAMNTPVQGTAADLIKIAMINV------------------YNRLKAE------ 786

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                    DI              ++L VHDE++ E  ++   
Sbjct: 787 -------------------------DI-----------DAKLILQVHDELILEASESDAE 810

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                L   M         +PL  + +    +
Sbjct: 811 HAAQLLKEEMQNVYE--MKVPLSVDVHTGDSW 840


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/661 (15%), Positives = 194/661 (29%), Gaps = 140/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +   A +   + V   + +    + + L  +  D T     + +  +    K   GID+
Sbjct: 327 RLHGVALS-GGDEVFYIEISGDQEI-ALLKAFFADATTKFFGYRTKRDNHALKNH-GIDV 383

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                    VLA+               +F   L +    +       +    S P    
Sbjct: 384 HVTA--D-LVLAQHLVNGG-----AKI-SFQTLLVESGHIQEAAFFAKEWGASSLPVQNL 434

Query: 149 RANHVQAWQLF-------GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             N  Q + +F         Y    +E  + L      +   E+ L  +   +   G  +
Sbjct: 435 PQNPAQYFGIFVSRLPSIKNYLFEKLE-EKGLKSIFKNV---EQPLEEILFAMECAGMPL 490

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D + +L L   +++E +   ++I  L      + +    L   L+   GI  VD ++ T 
Sbjct: 491 DSEGLLVLDRDLSKELETYTQEIYDLAGCEF-NIKSPKQLSDVLYHRLGIKPVDKAKSTK 549

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRW 320
             +L     +      IL   A+       +  L   +     R+  T    G + TGR 
Sbjct: 550 AEVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVG-TVTGRL 608

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVA 379
           S      QN+P                                +R            + A
Sbjct: 609 SCQDPNLQNIP------------------------VRYERGKSLREAFRFTKENDYFLAA 644

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + +E R LA ++ ++   +AF +GEDI+  T ++ FN P+D+V++ QR   K +   L
Sbjct: 645 DYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGL 704

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                                           Q    +   K+ 
Sbjct: 705 --------------------------------------------AYGQQAYGLSKNLKIS 720

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               + +  A+ A++    +      E  +   +    +   R+ +              
Sbjct: 721 VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESS--------- 771

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
              P +R                           G       +Q  + +++   M N ++
Sbjct: 772 ---PGAR------------------------AASGRLAVNTRIQGSAAELIKLAMLNISR 804

Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672
                     ++L +HDE++ E P      +  L    M    S    +PL       K 
Sbjct: 805 ELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMS--LSVPLVVNVLIGKN 862

Query: 673 Y 673
           +
Sbjct: 863 W 863


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/679 (12%), Positives = 191/679 (28%), Gaps = 151/679 (22%)

Query: 17  PKVGVWAYAEQAVITLCA--------YAWDDEPVKLWDRTE-----QSAMPSDLLQYLRD 63
            +  ++ Y E   I L +         ++ D  V   D        +        +    
Sbjct: 322 KENKLYLYFELEDIVLFSKSRIKILYVSFKD-EVYRIDFETLLKNTKEEFIEVCKEIFES 380

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSE 120
           + +  + ++S   R + +K LG++     +   ++ A           + +      F  
Sbjct: 381 KEIKKITYDSKNPRTVLRK-LGMEFNGINF-DINLAAYLIDPVRKEYEISSLASEYLFKN 438

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              + E+ K                     N +       E   +D +    L+      
Sbjct: 439 INREDEDLK-----------------IKEVNIMPKLYKVLEEKIKDQDIEELLY------ 475

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E+ L      +   G+++D +++L+L++    E +    +I  +++    +      
Sbjct: 476 -KIEQPLTETLSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMSEEEF-NINSPKQ 533

Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   LF    + ++  ++    T   +L          D I      +      +  L  
Sbjct: 534 LGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKA 593

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           A+  DG++         + TGR S      QN+P                          
Sbjct: 594 AIDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IK 628

Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   I +     ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ 
Sbjct: 629 YEMGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASEV 688

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F  PID+V+   R+  K +   + Y  G       +    L++ +        +  E + 
Sbjct: 689 FKVPIDEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYP 743

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEG 535
             + +   + ++  +      ++           R   + V    K +        +   
Sbjct: 744 NVKIYLENIVEEAIQKGYVTTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
              SA  +  +  + +              R+L   + K                     
Sbjct: 795 IQGSAADIIKLAMVNVH-------------RKLKEDNFKSS------------------- 822

Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
                        I+                     ++          +  L    M + 
Sbjct: 823 -------------II----LQVHDE-----------LILNVYKDELEKIKALVKREMEQV 854

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                G  L  +      +
Sbjct: 855 LELKVG--LDVDINIGNNW 871


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 104/666 (15%), Positives = 186/666 (27%), Gaps = 129/666 (19%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERIL 79
                E A          D      D   Q A   ++L  +LRD     V H        
Sbjct: 398 PGRIGEDAAALAI---VRDGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFKAALKA 454

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFC 136
              + G+++       TS+             L                 +   L   F 
Sbjct: 455 LT-SRGLELEGV-VDDTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQLELSFD 512

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                +       A  VQA   + E   ++  A  EL   L      E  +  +   +  
Sbjct: 513 GEDEAAADALVQSAAVVQALSRYFEGELKERRAE-ELLSTL------ELPVSRVLADMEL 565

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  ID+  +      +A+   +  E         + +      L+  LF    +     
Sbjct: 566 AGIGIDMARMDDQLADLARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKK 624

Query: 257 SEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +        +LK++L  +    L   L+ +R A+       L +L ++V+ DGR+  T 
Sbjct: 625 IKSGYTTDAASLKNLLEKTGHEFLV-QLMAHREAAKLRQ--MLESLKKSVAEDGRIHTTY 681

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                                VR   +
Sbjct: 682 AQNVA-ATGRISSNNPNLQNIP------------------------IRSEEGRRVRGIFV 716

Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
              G   L+ AD + IE R++A ++G+   I+A+ +GED++    +  F+ P ++V+   
Sbjct: 717 VGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAM 776

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R+  K M   L Y        +      L++            F+ +     +   + DQ
Sbjct: 777 RSKVKAMSYGLAYG-----LTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQ 831

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    + G          R     +    + L E    +        +        
Sbjct: 832 ARVDGYTATIEGR---------RRYLPDLTSTDRQLRENAERIALNSPIQGSAADII--- 879

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +     V  +                          Q ++  
Sbjct: 880 ------------------KRAMLGVHAELKA-----------------------QGLA-- 896

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
                          ++L VHDE+V E       +V  L    M         +PL+ + 
Sbjct: 897 -------------SRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAAD--LSVPLEVQI 941

Query: 668 YEAKRY 673
                +
Sbjct: 942 GVGPSW 947


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/677 (14%), Positives = 177/677 (26%), Gaps = 143/677 (21%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWD----RTEQSAMPSDLLQYLRDETVMCVAHNSLF 75
            +      A +   +   D     + D      +       L   L D     V  ++  
Sbjct: 340 TLAPGRGDAQVVAVS---DGARSLVVDMTLLLAQDEEALDQL---LSDPDHPKVVADAKG 393

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKAL 131
                 +  GI +        ++ A           +       L          E    
Sbjct: 394 SWHAL-RGRGIGLDGV-VADPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQAE--PQ 449

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
            A   +   D  P     A+  +A  L         +  +     L   ++ E  +    
Sbjct: 450 TAFDLESLADGTPPRTLLASARRAACLLPLQEVLGEQMAQRGAVTLY--TELEMPVAACL 507

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             + D G  +D  ++   +  +        E         + +      L+  +F    +
Sbjct: 508 AQMEDAGIAVDDSVLAAREVELDARVTHAAEAAFAAAGHEL-NLSSPKQLQAVIFDELKM 566

Query: 252 DLVDMSE---GTLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                ++    T    L+           + L+ +R A        +  L +AV +DGR+
Sbjct: 567 PKTRRTKRGYTTDAEALAALYAKTGHPFLEHLLEHRDAIKLRQT--VEGLRKAVLADGRI 624

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T Q   A  TGR S      QN+P                                +R
Sbjct: 625 HTTFQQTVA-ATGRLSSTDPNLQNIP------------------------ARTEEGMRIR 659

Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
                  G+  L+ AD + IE R++A ++G+   I AF +GED++    A      +  V
Sbjct: 660 EAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVAAMVHGIDVADV 719

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           + EQR+  K M   L Y        T                                  
Sbjct: 720 TAEQRSHVKAMSYGLAYG-----LSTYGL------------------------------- 743

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                   A +  +       ++ A+ A+   V    + +                    
Sbjct: 744 --------ARQLGIDNAEASALRDAYFARFGAVHDYLESVVAQARRDGWTQTMF------ 789

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                RR    D+  D         +               +Q 
Sbjct: 790 --------------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQG 820

Query: 605 ISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657
            + DI+ + M +             ++L +HDE++ E       +V  L    M+     
Sbjct: 821 SAADIVKKAMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMSGAAQ- 879

Query: 658 AKGLPLKAEGYEAKRYR 674
              +PL         +R
Sbjct: 880 -LSVPLDVSVGRGATWR 895


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/793 (13%), Positives = 194/793 (24%), Gaps = 203/793 (25%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCA-YA-----WDDEPVKLWD-RTEQSAMPSDL 57
              D E  +   +  VG        V+T  + Y+     + + P    D            
Sbjct: 341  ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 396

Query: 58   LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLKN 111
             ++L  +  + V HN  F+R +     GI++       T  +AR            SL++
Sbjct: 397  KEFLESKNYLKVWHNYSFDRHVLFNH-GINVQGLG-GDTMHMARLWNTARFQNGGYSLES 454

Query: 112  ACLALNFS-EHLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                L    +   K   G   L     KG     P         +  + +  Y   D E+
Sbjct: 455  LTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 514

Query: 170  TRELFKRLIPLSDG----------------ERDLW--------LLDQTINDRGYRIDLDL 205
            T  L + L    D                   + +             I  RG  +DL+ 
Sbjct: 515  TWFLHRVLQDKLDQTFWFEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEY 574

Query: 206  VLKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYL----FLI-------- 248
            +  +++   ++R +L++ +         +    +       +  L    F          
Sbjct: 575  LAGVEKQALEDRARLEKLVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLP 634

Query: 249  -------------------------------TGIDLVDMSEG----TLKSILSHSNITQL 273
                                            GI     +          +L        
Sbjct: 635  AERSFEVENTEGFIEEGKQKAKKKRNITIRGLGIPPTHFTASGLPAASAEVLKDLAGHPE 694

Query: 274  AKDLILNRLA---------------SSGS---------AILKLNTLSEAVSSDGRLRGTL 309
            A      R                                  +  L E   S+ R+  +L
Sbjct: 695  ANPPQYGRAYGHFEDKEEGAAACVALKALFDISSINTMLNNFILPLQELADSNSRVHCSL 754

Query: 310  QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                 + TGR S      QN P   +                            +R    
Sbjct: 755  NLN--TDTGRLSSRKPNLQNQPAMGKDRY------------------------KIRDAFT 788

Query: 370  ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
            A  GKKL+VAD + +E R++A I      I+AF  G D +  T                 
Sbjct: 789  APPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGGDFHSRTAMGM--------YPYVA 840

Query: 430  AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
               +  E  L +                                   +  +  +      
Sbjct: 841  KAVENGEALLEWDHTTGK-----------EPPAPLLKDKYGDERKNAKVLNFSIAYGKTA 889

Query: 490  PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
               A    +         + W +    V    K   E           +           
Sbjct: 890  FGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIETARTFGYTRTLLGRY-------- 941

Query: 550  VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            RRL  + ++ D      A     R            +Q  + D+
Sbjct: 942  ----------------RRLPDAMLRDDSMTSKKARGHAERAAI------NTPIQGAAADV 979

Query: 610  LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLP 662
            + + M          + G+ +V  +HDEI+ E P+        L   LM         + 
Sbjct: 980  VMQAMLQVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPFQKPLSVA 1039

Query: 663  LKAEGYEAKRYRK 675
            L+ +      + K
Sbjct: 1040 LEVDANVDDSWFK 1052


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/615 (12%), Positives = 177/615 (28%), Gaps = 121/615 (19%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D T +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A        K   E   +  + L      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
             + +++   +   +++++ I +       +      L + LF   G+ ++  ++    T
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          + IL     +      +  L + + SDG++         ++TGR 
Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379
           S      QN+P                                +R   +       +  +
Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+ ++    AF  G+DI+ +T  + F     + V+   R   K +   
Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + + +      + FE +   + +   +  +  +    + L
Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 L     R  +  +              +      SA  +  +  + + +     
Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                +L E  +QA              
Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828

Query: 619 KNGYDIVLTVHDEIV 633
                ++L VHDE+V
Sbjct: 829 -----MLLQVHDELV 838


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/677 (12%), Positives = 183/677 (27%), Gaps = 147/677 (21%)

Query: 17  PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64
            +  ++ Y E   I L +       YA   + V   D        +        +    +
Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFEGK 381

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
            +  + +++   R + +K LGI+    ++   ++ A           + +      F   
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + E  K                     +  +                           
Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E+ L      +   G+++D D++L+L++    E +    +I  +++    +      L
Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF    + ++  ++    T   +L          D I      +      +  L  A
Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  DG++         + TGR S      QN+P                           
Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629

Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                +R   I + G   ++ AD + IE RVLA I+ +   I AF   +DI+  T ++ F
Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             PI++V+   R+  K +   + Y  G       +    L++ +        +  E +  
Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            + +   + ++  E      ++           R   + V    K +      +      
Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
             +                          +L   +V       N  +S            
Sbjct: 796 QGSAADII---------------------KLAMVNVHKKLKEDNFKSS------------ 822

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
                      I+                     ++          +  L    M +   
Sbjct: 823 -----------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVLE 856

Query: 657 WAKGLPLKAEGYEAKRY 673
              G  L  +      +
Sbjct: 857 LKVG--LDVDINIGNNW 871


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/592 (16%), Positives = 170/592 (28%), Gaps = 122/592 (20%)

Query: 94  ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               +            SL+         +   + E+G+A+   F     ++      + 
Sbjct: 403 FDIYLGGYVLNPSDERYSLEVMSKKYL--DIDLEEEKGEAVQQSFLDIEDNNKYNMQMKK 460

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                        K   E   +L++ +      E  L  +   +   G+++DL+ + +L 
Sbjct: 461 AKSIYSLAGIFKEKIKEEEMEDLYQNI------EHKLMYVLGDMELEGFKVDLNTLEELG 514

Query: 211 ELIAQERKKLDEDIVKLTDG-IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
               +  + L  +I +        +   T  L   LF   G+  +  ++    T   +L 
Sbjct: 515 VDFDKRVEDLTRNIREAAGEDEDFNVNSTKQLGHVLFDKMGLPALKKTKTGYSTNIEVLE 574

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVF 325
                     +I++    S      +  L   +  D  ++  T      + TGR S    
Sbjct: 575 KLRDHHPIIPMIIDLRQISKLNSTYVKGLVSLIDKDTNKIHSTFNQT-ITTTGRISSSNP 633

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGI 384
             QN+P                                +R   I +S    LV AD + I
Sbjct: 634 NLQNIP------------------------VRTEEGRIIRKVFISSSENNVLVDADYSQI 669

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA I+ ++  I +F N EDI+  T ++ FN PID+V+ E R+  K +   + Y   
Sbjct: 670 ELRVLAHISKDEKLINSFKNNEDIHTRTASEVFNVPIDEVTSEMRSSAKAVNFGIVYG-- 727

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      GL + +        +    +     +   +     E      +      
Sbjct: 728 ---ISDFGLAKGLSIARKDAKEYIDTYLSKYPGVCKYMEDIVVTAKEQGYVTTMFNR--- 781

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R     +     ++                                        
Sbjct: 782 ------RRYINEIYSKNFNVRSF------------------------------------- 798

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY 622
                     G+ + LNT             KL    VQ               K     
Sbjct: 799 ----------GERTALNTPIQG---SAADIIKLAMVNVQ-----------NELNKRKLKA 834

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ +TP      V   L   M          PLKA+    K +
Sbjct: 835 KLILQVHDELIIDTPMEEVEEVKALLKDKMENVVD--MSCPLKADISVGKTW 884


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/540 (17%), Positives = 154/540 (28%), Gaps = 118/540 (21%)

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           Y    A H +   +      + VE   +    L  + + E  L  +   +   G  IDL 
Sbjct: 408 YAPEIAVHRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPLVPVLCRMESAGIGIDLA 467

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGT 260
                   + +    L   I  L      + R T      LF   G+         +  T
Sbjct: 468 AFDNFLRQVKKSLDDLTASIYSLAGKEF-NIRSTQQTAQVLFDELGLKARRKTPKGAYST 526

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L          DLIL            L  L   V   GRL  T     A+ TGR 
Sbjct: 527 SNVVLESMRRDHDIVDLILQYRTLEKLRSTYLEPLPRKVDVGGRLHTTFNQL-ATATGRL 585

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                          G     +R+C   S GK LV AD
Sbjct: 586 SSSNPNLQNIP------------------------IKGEFGPRMRACFKPSKGKLLVAAD 621

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA ++ +   ++AF   EDI+  T    F+  I +VS+++R   K +     
Sbjct: 622 YSQIELRILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTIN---- 677

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                          G+                                 + + +  +  
Sbjct: 678 ----------FGLLYGMGP------------------------------QKLSRELSISM 697

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
              +     + +K   V   ++ + E                                  
Sbjct: 698 EEAKEFISVYFSKLDRVRDFYQQIEEKAQEQGYVTTM----------------------- 734

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618
              + RR +  D+    + +     +              ++Q  + D++ + M      
Sbjct: 735 ---AGRRRLLPDINSRNTNMAQQARRT---------AVNTVIQGSAADVIKKAMLAVDSD 782

Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 G  +VL VHDE++ E            L  +M    S    +PL  E    + +
Sbjct: 783 SELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARVMAGVES--LEVPLLVEWGTGENW 840


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/648 (14%), Positives = 169/648 (26%), Gaps = 138/648 (21%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             D  E        L  ++ D     V HN+     +F +  G  +       T++ A  
Sbjct: 371 WLDPAELDEADEQALAAWIADPRRPKVMHNAKNALRVFPEQ-GWRLEGVSM-DTALAAYL 428

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L          +G   +A       ++          +   + 
Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPAPSADG--QLAFGADDRAEADALMAQARAVLDLGEA 486

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    +  V AT  L        D E    +L   +   G   D   +  +++  A   +
Sbjct: 487 FAVRLEE-VGATGLLH-------DMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQ 538

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273
           +  ++          +      L+  LF    +     ++    +               
Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHE 597

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              ++L     +   +  +  L + +  DGR+  T     A  TGR S      QN+P  
Sbjct: 598 LPVIMLRHREQAKLRVT-VEGLIKTIGQDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392
                                         +R   +   G   L+ AD + IE RV+A +
Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF +GED++ T  ++ F      V  E R   K M   L             
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGL------------- 738

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GL     SQ +   +                                   +   +  
Sbjct: 739 -AYGLSAFGLSQQLNIDAG------------------------------EARGLMDTYFQ 767

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV      + E           +                           RR    D
Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626
           +  D            R            +Q  + DI+   M +  +          ++L
Sbjct: 802 LNSDNR---------QRREAAERMALNAPIQGTAADIVKVAMLHVDRALTEARLTSRMLL 852

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VHDEIV E        V  +    M+         PL       + +
Sbjct: 853 QVHDEIVLEIAAGEREQVEEILRREMSTAVELRA--PLDVSVGVGRDW 898


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 379 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 438

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 439 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 496

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 497 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 545

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 546 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 604

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 605 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 661

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 662 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 696

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 697 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 756

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 757 SKIKAMNYG--------------LAYGLS------------------------------A 772

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 773 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 821

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 822 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 857

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 858 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 915

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 916 LTVSIGVGRSW 926


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/571 (14%), Positives = 142/571 (24%), Gaps = 113/571 (19%)

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L   E   +          F   +  +           +A          + E  
Sbjct: 405 ELADYLLHPEESRRDIA--RAAFAFLGTATSAEGLSSEAYAVREALLGARLQPVMETELA 462

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   +L      E  L  +   +   G  +D   + + +    +    L  +I  L   
Sbjct: 463 AQGLMQLYRTV--ELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHTLAGA 520

Query: 231 IIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              +      L   LF   G+             T    L          D +L     +
Sbjct: 521 EF-NISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTYRMWT 579

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 L+ +   +    GR+  +      + TGR S      QN+P             
Sbjct: 580 KLRSTYLDGIGALIRPATGRVHTSFNQTV-TATGRLSSSDPNLQNIP------------- 625

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              VR+      G   L+ AD + IE R+LA ++G+   I AF 
Sbjct: 626 -----------VRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFR 674

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +G+DI+  T A+ F  P+D V+ EQR   K +   + Y               L + +  
Sbjct: 675 HGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYG-----LSDFGLARDLGIGRRE 729

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   FE +    +    +            L G          R     +      
Sbjct: 730 AGGYIDRYFERYHGVRTFLDKIVADAHTNGYVTTLYGR---------RRALPALASRNYM 780

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                  +                 +V                                 
Sbjct: 781 QRSFAERMAMNTPIQGTAADLIKIAMVRAYDALQ-------------------------- 814

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
                                 + D+              I+L VHDE+V E       +
Sbjct: 815 ----------------------AADV-----------KSRILLQVHDELVMEVTAEETET 841

Query: 644 VGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           V  L    M+     A  +PL  + +  K +
Sbjct: 842 VTELLRTAMSGAAELA--VPLAVDVHVGKNW 870


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/631 (14%), Positives = 171/631 (27%), Gaps = 148/631 (23%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +   L D+++  + ++      L K                ++        S KN     
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---- 429

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  K    + LI      S        +               +     T  L+  
Sbjct: 430 ------FKEVLKETLIDNIIIESAKIVINFISLYKQTIL--------ELKDNKTFRLYSN 475

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           +      +  +  +   +   G  +D + + +L      E  KL+E+I  L+     +  
Sbjct: 476 I------DLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIG 528

Query: 237 QTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAIL 290
               L   LF    +          S  T   IL   +       DL+L     +     
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             ++L + + +      T     ++ TGR S      QN+P                   
Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP------------------- 629

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                      + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI+ 
Sbjct: 630 -----IRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHT 684

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  + FN    +++ E R   K +                    G+             
Sbjct: 685 QTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 718

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A +  +         K + A+++GV +  +        
Sbjct: 719 ------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA-- 758

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                     + ++     R+     +               R 
Sbjct: 759 ------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQLAERA 789

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DI+   M N        K    +VL +HDE++ E P      +
Sbjct: 790 AINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEII 843

Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
              +  +M    S    +P+  E      + 
Sbjct: 844 TPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/640 (14%), Positives = 172/640 (26%), Gaps = 148/640 (23%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           T  +     +   L D+++  + ++      L K                ++        
Sbjct: 368 TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGL 424

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S KN            K    + LI      S        +               +   
Sbjct: 425 SQKNL----------FKEVLKETLIENIIIESAKIVINFISLYKQTIL--------ELKD 466

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T  L+       D +  +  +   +   G  +D + + +L      E  KL+E+I  L
Sbjct: 467 NKTFRLYS------DIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFAL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281
           +     +      L   LF    +          S  T   IL   +       DL+L  
Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 579

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +       ++L + + +      T     ++ TGR S      QN+P          
Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIP---------- 629

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                               + +R   IA  G KL+ AD + IE R+L+ IA  D   +A
Sbjct: 630 --------------IRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F N +DI+  T  + FN    +++ E R   K +                    G+    
Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A +            K + A+++GV +  
Sbjct: 719 ---------------------------AFGLAKQLNATNGEASEYIKKYFAEYKGVQEYM 751

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +                                  + ++     R+     +        
Sbjct: 752 EQTKAFA--------------------------SSNGYVTNFFGRKCFVPLIHDKK---- 781

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635
                  R            +Q  + DI+   M N        K    +VL +HDE++ E
Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            P      +   +  +M    S    +P+  E      + 
Sbjct: 835 APIDEVEIITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 179/652 (27%), Gaps = 156/652 (23%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILF-KKTLGIDIPSKR 92
           YA  D  V     +E      +L+  L D  V   V     F+      + +        
Sbjct: 347 YAVQDTTVY--PLSE-----EELVSLLDDPKVTLDV-----FDSAPLYARAMAAGSWGSS 394

Query: 93  WI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            +    + A      +S          +   T      A  A  C+              
Sbjct: 395 IVWDGKLAAYLLDASAS------HYLLTTLATSY---HARSAFSCEE------------- 432

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +  A  L   + K   E T      L    +    L  +   +   G  +D + +     
Sbjct: 433 YPDAGFLADLFAKMKAEITENGEDDLYNNIEF--PLAQVLADMTRTGILVDREGIEAFGV 490

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268
            + QE  ++   I         +      L   LF   G+     ++    T    L   
Sbjct: 491 QLRQELDQVLTRIEMEAGTSDFNPNSPKQLGTLLFDTMGLPHGKKTKNGWSTDAETLEKL 550

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
               L +D IL   A        +  L + +  DGR+        A RTGR S      Q
Sbjct: 551 RDIPLVED-ILQYRACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQ 608

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R+  +A  G  LV AD + IE R+
Sbjct: 609 NIP------------------------IRTEMGSKLRAYFVAKPGCVLVDADYSQIELRI 644

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA + G+    +AF +G DI+ +T AK +N   + V+   R+                  
Sbjct: 645 LAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSA---------------- 688

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                       +A +  +         +    +     E   +
Sbjct: 689 ----------------------------KAINFGIMYGKGAYSLSKDIGVSVKEAEAFLQ 720

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A    +    +                                     +     RR 
Sbjct: 721 TYLATFPNIDGYMEKTIADARQCGY--------------------------VSTLFGRRR 754

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622
              ++  +   +  +  ++ R            +Q  + D++   M          K   
Sbjct: 755 ALPELNSNNHNIRASGERMAR---------NTPIQGTAADVIKLAMVRVWRRLRNEKMES 805

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++LTVHDE++ E P+        +    M     +A  +PL  + +  K +
Sbjct: 806 RLILTVHDELIVEAPEAEAEKAAQILREEMEGCVHYA--VPLSTDVHTGKNW 855


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/559 (16%), Positives = 147/559 (26%), Gaps = 123/559 (22%)

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----LSDGER 185
           L A     +  + P    R    +                REL   L         + E+
Sbjct: 466 LYAYLLDPANTNMPVVAKRYLDREWPADAPTRAAITGHLVRELPPLLDDARRKMYDEMEK 525

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +  RG ++D D +  L          L+  I +         R    L   L
Sbjct: 526 PLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEFH-IRSPKQLETVL 584

Query: 246 FLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           +    +     ++      T  S L           L+L            L+ +   V+
Sbjct: 585 YDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPNLVN 644

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GRL  T     A  TGR S      QN+P                            
Sbjct: 645 PHTGRLHTTFAQT-AVATGRLSSLNPNLQNIP------------------------IRSE 679

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   IA +G  L+ AD + IE R+LA IA +    +AF  G DI+  T A+    
Sbjct: 680 LGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGL 739

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
               V   QR   K +                    G+   + S ++             
Sbjct: 740 DEATVDANQRRAAKTVN--------------FGVLYGMSAHRLSNDL------------- 772

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +         + + A + G+ +                    
Sbjct: 773 -----------------GIPYAEAATFIEIYFATYPGIRRY------------------- 796

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                      +   +   ++     RR     +         A  +L            
Sbjct: 797 -------INHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERL---------AYN 840

Query: 600 NIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654
             +Q  + DI+   M          G  ++L VHDE++ E P      V  L   +M   
Sbjct: 841 MPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV 900

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL  E      +
Sbjct: 901 VQ--LKVPLAVEVGTGPNW 917


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 173/659 (26%), Gaps = 140/659 (21%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D    + D          L + L         H       +    + + +P      T++
Sbjct: 415 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 471

Query: 99  LARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                       SL++            +                +    D     +   
Sbjct: 472 AGYLIDPDFQGGSLQDCADHFLHRH--AEEVTETEQGTLDIGMDDERAERDRKVVRNAAI 529

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
             L         +  +     L+   D E    +    +   G  +D   + +L E+   
Sbjct: 530 VSLLAR--TLARQLEQRCQYSLLR--DIELPTSVALFHMEHTGASVDRARLDELLEMFTD 585

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSI 264
           E  ++++   +     + + +    L + LF   G++    ++            TL + 
Sbjct: 586 ESNRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNAKALTTLYAT 644

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323
               +        +L     +      + TL +A++  DGR+  T     A  TGR S  
Sbjct: 645 SEEGSRPNEFLGALLRHREVNKLR-QIVQTLIDAINPRDGRIHTTFTQTVA-ATGRLSSV 702

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382
               QN+P                                +RS  +   G   L+ AD +
Sbjct: 703 DPNLQNIP------------------------NRNATGRDIRSAFVPGEGFADLLSADYS 738

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            +E R++A ++G++  IKAF +G D +    +  +  P+D+V+ +QR   K M   L Y 
Sbjct: 739 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG 798

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                  T      L                                        +    
Sbjct: 799 -----LSTYGLSQQL---------------------------------------GIPSKE 814

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
              ++  +      V    + L                                      
Sbjct: 815 AAALRSRYFQTFGKVHDYLESLVSNARNTGYTQTMF------------------------ 850

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR  +  +         A  +               +Q  + DI+   M    +   
Sbjct: 851 --GRRRYFPALTSANRVARDAAERG---------ALNAPIQGTAADIMKIAMIRVDRALR 899

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
                  IVL +HDE+V E        V  L    M    + A  +PL         ++
Sbjct: 900 DGNLNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHAVNIA--VPLDVSTGVGSDWQ 956


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/658 (13%), Positives = 180/658 (27%), Gaps = 135/658 (20%)

Query: 32  LCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             A +   +   +         ++     + ++ R+   + + +N            GI 
Sbjct: 365 GFAVSSLKDDFYIPLGHTPLFHKNLDLDKVKEFFRNSDSIFITYNFK----PLLN-EGIK 419

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I +       + A       + +         E   +   G  +     K   ++P    
Sbjct: 420 IKNMDM-DLMI-AYHLISSQTKEGV-------EIPLEQLSGIDIAPYSEKFGKEAPGNLS 470

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDL 205
           T        +      +    A  E+  +  L  L + E  L  +   +  +G +ID   
Sbjct: 471 TEEYGKFLVERSKGIMETYGIAMEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDPVY 530

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
             K ++ +      L + I ++      +      L   LF    +D V  ++    T +
Sbjct: 531 FAKYEKELEILLNNLQKKIFEIAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDE 589

Query: 263 SILSHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +L    N        IL     +      ++ L +   S  RL  T    G + TGR S
Sbjct: 590 EVLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSRDRLHTTFNQIG-TTTGRLS 648

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA NG  L+  D 
Sbjct: 649 SSNPNLQNIP------------------------VKTDEGMKIRQGFIADNGNVLMGIDY 684

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++ ++  I A+ N ED++  T  K F                        
Sbjct: 685 SQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF------------------------ 720

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                              +     + +       +  +  +         + +  +   
Sbjct: 721 -------------------ELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQK 761

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   +  ++  V    K +                RR+        +  K      
Sbjct: 762 EATDYINRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKN----- 816

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617
                                   Q  R          +++Q  + +IL + M       
Sbjct: 817 ------------------------QAERMA------VNSVIQGTAAEILKKVMIEIFKVI 846

Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             K    ++L VHDE++ E  +        T+ ++M  +  +   + L       K +
Sbjct: 847 ENKEDISLLLQVHDELIFEIKEEKVEEYRTTIENIMRNSVKF-DDVVLDINTNIGKNW 903


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/677 (16%), Positives = 207/677 (30%), Gaps = 140/677 (20%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLF 75
            +VGV +      +   A+A              +      L  +L  +      H++  
Sbjct: 327 ARVGVASRESDGEVEGLAFAV-GGEGGYVRLAALTPDDETALADWLASDA-PKAVHDAK- 383

Query: 76  ERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKAL 131
              L  +     +        T++ A          SL +  L     E   +   G   
Sbjct: 384 --PLLHRLRARGLRLGGLTSDTALAAYLVRPGQRSFSLDDLVLRHLQRELRAEEPGG-GQ 440

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           ++   +   +S       A  V+A  +       D E  R   +    L+D E  L  L 
Sbjct: 441 LSLLDEEEDESG--KAATAAIVRASAVAELADVLDTELHRTGQE--GLLADLELPLLALL 496

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             I   G  +D + +  L+   A   K+  +D   +    I +      L++ LF   G+
Sbjct: 497 AEIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEI-NLGSPKQLQVVLFDELGM 555

Query: 252 DLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
                           L+S+   +    L    +L     +      ++ L +AV+ DGR
Sbjct: 556 PKTKKTKTGYTTDADALQSLFESTQHPFLQH--LLAHRDVTRLKTT-VDGLLKAVADDGR 612

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  T     A  TGR S      QN+P                                +
Sbjct: 613 IHTTFHQTIA-ATGRLSSTDPNLQNIP------------------------IRTDEGRRI 647

Query: 365 RSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +   G  +L+ AD + IE R++A ++G++  I+AF +GED++    +KAF+ P  +
Sbjct: 648 REGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGE 707

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+ EQR   K M   L                GL     +Q ++  +             
Sbjct: 708 VTAEQRRRVKAMSYGL--------------AYGLSEYGLAQQLRIPAA------------ 741

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                                   +A+ ++  GV    + + E           +     
Sbjct: 742 ------------------EAREQMEAYFSRFGGVRDYLQSIVEEARKKGYTETIL----- 778

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 RR    D+  D         ++              +Q
Sbjct: 779 ---------------------GRRRYLPDLNSDNRQRREMAERM---------ALNAPIQ 808

Query: 604 AISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
             + DI+   M         ++    ++L VHDE+V E  D    +V +L    M     
Sbjct: 809 GSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAAVESLVREHMGNA-- 866

Query: 657 WAKGLPLKAEGYEAKRY 673
           +   +PL+      + +
Sbjct: 867 FQLSVPLEVSVGVGRSW 883


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 183/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+    V H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R  ++ 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGVVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 338 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 397

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 398 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 455

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 456 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 504

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D D+   L+    +   +  ++      G   +      L+  LF    +     +
Sbjct: 505 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 563

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 564 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 620

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 621 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 655

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 656 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 715

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 716 SKIKAMNYG--------------LAYGLS------------------------------A 731

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 732 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 780

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 781 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 816

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 817 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 874

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 875 LTVSIGVGRSW 885


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/662 (13%), Positives = 188/662 (28%), Gaps = 141/662 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85
                + +D+    +       +  ++     + ++ +  +  +++N      +    LG
Sbjct: 84  LGIIISTEDKD-FYFPLNHGGLLAKNIDKNLVVNFISELNIKFISYNFK----VLLN-LG 137

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           I+     ++   +        + +                 K   GK  I      + D 
Sbjct: 138 INFK-SMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGK--INIELITAQDF 194

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y    +  + A      Y  +  +  + L        + E  L  +   +  +G  ID
Sbjct: 195 SKYLSATSIGILAIYDELNYLLKKEDLYKILM-------ENEMPLIQVLSLMERKGIEID 247

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +         + +E  ++++ I +       +      L   LF+   +     ++    
Sbjct: 248 IQYFKNYSLELDKELLRIEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 306

Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L            L+L+    +      ++TL   V  + R+  T    G + TG
Sbjct: 307 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TATG 365

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   +A  GK L+ 
Sbjct: 366 RLSSSDPNLQNIP------------------------VKTDDGIKIREGFVAGAGKVLMS 401

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437
            D + +E RVL  ++ ++  I+A+   +D++  T  + FN    + VS+EQR I      
Sbjct: 402 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIA----- 456

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                  +  +  +         A + K
Sbjct: 457 ---------------------------------------KIINFSIIYGKTPFGLAKELK 477

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         K +  ++  V    +++ E                               
Sbjct: 478 IPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLF------------------- 518

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R+   S +        T  SQ  R           ++Q  + ++L + M   
Sbjct: 519 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 562

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671
                 K    ++L VHDE++ E  +        +   +M       + + L       K
Sbjct: 563 YDVLKDKEDITLLLQVHDELIFEVEENSVEKYSEILADIMKNTVQL-EDVKLNININIGK 621

Query: 672 RY 673
            +
Sbjct: 622 NW 623


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 177/654 (27%), Gaps = 137/654 (20%)

Query: 10   TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67
            T     +   G+  +     I L   A +D PV ++D     + ++ + L + L++E V+
Sbjct: 1309 THCGLDIETTGLEVF--DEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366

Query: 68   CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
             +  N  F+                   T + ++      ++         +  + K   
Sbjct: 1367 KIIQNGKFDAKFLMHN---KFEVANIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLN 1419

Query: 128  GK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                   +    +      +        +  L   Y K   E  RE    +  ++D E  
Sbjct: 1420 VTLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICREN---MGTVNDIENK 1476

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
              L    +   G  +DL+ + K    I  E  +    +         +      +   L 
Sbjct: 1477 CILPICDMELNGITVDLESLSKSTNEILSELNEETSKLKAELKDEEINVNSQQQVLKALQ 1536

Query: 247  LITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304
                 D+   + E T  S L +    +    L   R             L + ++    +
Sbjct: 1537 NKNVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRR-LYKLYSAFYLKLPQHINKKTNK 1595

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            +  T      + +GR+S      Q +PRQ                              +
Sbjct: 1596 IHTTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNI 1626

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   I       ++AD   IE ++ A I  +D  +KA+ N  D++  T +      I  V
Sbjct: 1627 REIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIADV 1686

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
            +KE R I K +   L Y       K  A+                               
Sbjct: 1687 NKEDRHIAKAINFGLIYGMNYVNLKNYANTY----------------------------- 1717

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                         +    C     ++   ++G+ +    +      +     S  + R  
Sbjct: 1718 ---------YNLNMNLDQCLYFYNSFFEHYKGIYRWHNQI----KQMRALEYSTLSNRKV 1764

Query: 545  NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
              P                                                K     VQ 
Sbjct: 1765 IFPYFSFT-------------------------------------------KALNYPVQG 1781

Query: 605  ISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTK 653
               DIL   +    KN       I+L VHDEI+ E        ++  L   M  
Sbjct: 1782 TCADILKLSLVELYKNLRPINGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1835


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 68/497 (13%), Positives = 141/497 (28%), Gaps = 107/497 (21%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   + + G+++D+  V    E++  E +++ ++I         +   T  L
Sbjct: 491 DIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEF-NINSTREL 549

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              LF   G+     ++    T   +L           L+L     +  +   +  L + 
Sbjct: 550 GAILFDKLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYRKLTKLSSTYVTGLLKV 609

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
              D R+    +    +RTGR S      QN+P                           
Sbjct: 610 TGPDQRVHSVFRQTE-TRTGRISSTEPNMQNIP------------------------IRT 644

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +A  G  L+ AD + IE R+LA I+ +   I AF  G DI+  T ++ F 
Sbjct: 645 ELGSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFG 704

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            P + +  E R   K +   + Y  G       +    +++          +    +   
Sbjct: 705 VPAEVLPAELRRRAKAINFGIVYGIG-----AYSLSQDINVSVAEAKEYIENYLHTYSGV 759

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGS 537
             +   + +   +      + G    L           +     +         +     
Sbjct: 760 RQYMNDIVESSAKSGYVKTMFGRVRHL---------PEITSSNHNTKAFGERVALNTPIQ 810

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            +A  +  +  + +                  Y  +K +                     
Sbjct: 811 GTAADIIKIAMVKV------------------YRRLKEE--------------------- 831

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656
                  +S  ++                   DE++ E           +    M     
Sbjct: 832 ------GLSAQLI----LQVH-----------DELLIEVSKADAPRAKVILKEEMEHAAD 870

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  +  E + +
Sbjct: 871 --LSVPLSVDVSEGENW 885


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/577 (14%), Positives = 160/577 (27%), Gaps = 128/577 (22%)

Query: 116 LNFSEHLTK-----MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            +  E   K      E  K +         DS      +   ++ +        +     
Sbjct: 317 YDLKEIKKKVELDIDENLKDIKVISWINDPDSGGIKKHKDEQIEVFVKRVSSLAKSEFKK 376

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +  K +    + E  +  +   +   G +I+   V ++ + + +  K+++  I      
Sbjct: 377 LKENKLVKLYKEIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYCKE 436

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS----NITQLAKDLILNRLA 283
              +      L   LF   G++    ++    T +  L              D IL    
Sbjct: 437 EF-NLNSPKQLSFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRE 495

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
            S         L   ++ D R+  T +  G + TGR S      QN+P            
Sbjct: 496 LSKLKSTYTLNLLNYMADDKRIHTTFKQTG-TATGRISSINPNLQNIP------------ 542

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                          +    +R C  A  G + V  D + IE R+LA ++ ++  I AF 
Sbjct: 543 ------------VGSIYGKRIRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFI 590

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           N EDI+  T  + F    ++V  + R + K +                    GL      
Sbjct: 591 NDEDIHNKTAKEIFGV--EEVDPKHRRLAKAVNF--------------GIIYGLSPY--- 631

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A    +  +  ++  + +   + GV      
Sbjct: 632 ---------------------------GLARDTGITQSEAKVFIERYFNLYPGVKNYIDS 664

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           + +           +                           R+    D+      L   
Sbjct: 665 IIKEAKEKGYTETIL--------------------------GRKRFIKDINSANRMLKQ- 697

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637
             +  R            +Q  + DI+   M N  K          ++L +HDE++ E  
Sbjct: 698 --RAERIAINAP------IQGSAADIIKLAMINIYKYLQKTQIDVKMILQIHDELLFEVK 749

Query: 638 DTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +      V    + M         +PLK      K +
Sbjct: 750 EDIVEDFVQEFKNRMENVIK--LKVPLKVNYSTGKNW 784


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 92/650 (14%), Positives = 185/650 (28%), Gaps = 158/650 (24%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D  V +WD+   +   +++L  L D  +  +  N   E   F +  G+ +        S+
Sbjct: 363 DHKVYVWDKALLND--ANMLALLCDGAIKKIVPNPK-ELYKFMQGKGVSLQGV-IGDPSL 418

Query: 99  LARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            A           +K+                                    T  +    
Sbjct: 419 AAYLYEPGETHYDVKSLAETYLP------------------------ASCGGTAQDVEAL 454

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
             +                       D E  L  +   +   G  +D  ++ ++ + + +
Sbjct: 455 MPVLEGLMAERGLTEL--------YRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTK 506

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQ 272
           +   L++   +       +      L + LF   G+ ++  ++    T  S+L       
Sbjct: 507 QVADLEQKAKEEAGEDF-NVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEH 565

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              + I+     S      L  L   ++ + GR+        A+ TGR S      QN+P
Sbjct: 566 PIIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFNQ-MATVTGRLSSTDPNLQNIP 624

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
                                           +R   +   G   L+  D + +E RV+A
Sbjct: 625 ------------------------TRTEVGKQMRRMFVPGKGYDLLMSCDYSQVELRVMA 660

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            IAG++  I AF +G+DI+  T ++ F  PI+ V+   R+  K +   +           
Sbjct: 661 SIAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGII---------- 710

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+                                     +  +  +       ++
Sbjct: 711 ----YGISDF------------------------------GLGRQLGVPRSEAAQYIDSY 736

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            A++ GV +  +   +    +                            +     RR   
Sbjct: 737 FARYTGVKEYMEGEKKKAREMGY--------------------------VETLFGRRRYL 770

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624
            D+        +      R            +Q  + DI+   M +  K          +
Sbjct: 771 PDIHAKNFNRRSFA---ERTAI------NTPIQGTAADIIKIAMLHVAKELKEAGVKSRV 821

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE+V E  +     V  +    M +  +    +PL A+    K +
Sbjct: 822 LLQVHDELVLEVVEEEKDKVSAIVKNAMERAVT--LKVPLVADIAFGKTW 869


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/659 (13%), Positives = 178/659 (27%), Gaps = 147/659 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            +   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EVVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDIKRAKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L + + +      + FE +   +++   +  + 
Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREA 761

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            +    + +            R     +     ++        +      SA  +  V  
Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +              R L   + K                                  
Sbjct: 813 INLD-------------RALTEKNFKS--------------------------------- 826

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                +         IVL        E P+    +V  L    M      A  +PL A+
Sbjct: 827 ---RMLLQVHDE---IVL--------EVPNDELTAVRKLVKETMETAIELA--VPLVAD 869


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/682 (14%), Positives = 187/682 (27%), Gaps = 132/682 (19%)

Query: 8   IETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDET 65
           +E+    PL    V  +A     ++  A A    P   +D ++          +++ D  
Sbjct: 350 LESHRDAPLGLATVDTWALGSGSVSEIALATGSGPAAFFDPSQLDEADERTFAEWIADPD 409

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC-LALNFSEH 121
              V HN+     +F +  G  +       T++ A           L       L   E 
Sbjct: 410 RPKVLHNAKGIMRVFAEH-GWSVAGVTM-DTALAAYLVKPGRRSFELDALSVEYLG-REL 466

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              +      +A       +           +   + FG   K DV A   L        
Sbjct: 467 SPAVAADSGQLAFGADDEAERDALMIKARTILDLGEAFGGRLK-DVGAAGLLH------- 518

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  +  L   +   G   D   + ++++  A   +   ++          +      L
Sbjct: 519 DMELPVSELLARMERSGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGHEF-NLGSPKQL 577

Query: 242 RMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           +  LF   G+                L  +   ++       L  +R  +   +   +  
Sbjct: 578 QEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIML-RHREQARLRST--VEG 634

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L + ++   R+  T     A  TGR S      QN+P                       
Sbjct: 635 LIKTIAPGSRIHTTFNQTVA-ATGRLSSTDPNLQNIP----------------------- 670

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +  +G + L+ AD + IE RV+A ++ ++  I+AF +GED++ T  
Sbjct: 671 -VRTDEGRAIRRGFVVGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVA 729

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           ++ F+     V  E R   K M   L Y               L +          + FE
Sbjct: 730 SQVFSVDKSAVDPEMRRKIKAMSYGLAYG-----LSAFGLSQQLGITPDEARKLMENFFE 784

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            +     +   + ++       + ++G          R     +    +   E    +  
Sbjct: 785 RFGGVRDYLQRVVEEARATGYTETMLGR---------RRYLPDLTSDNRQRREMAERMAL 835

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                     A++ ++ M +    +     SSR L                         
Sbjct: 836 NAPIQGTA--ADIVKIAMLKVDAALTGEKLSSRML------------------------- 868

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
                                                EIV E        V  L     +
Sbjct: 869 ---------------------LQVHD-----------EIVLEIAPGERERVEELVR---R 893

Query: 654 NPSWAKGL--PLKAEGYEAKRY 673
             + A GL  PL         +
Sbjct: 894 EMTGAFGLSAPLDVSVGSGSDW 915


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 95/622 (15%), Positives = 183/622 (29%), Gaps = 149/622 (23%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGLPSSLKNACLALNFSEH 121
              ++ + +N+       KK     +     +    ++A                N  E 
Sbjct: 351 SSEILKIIYNAK---EALKKLKNSGLKLSPPYFDLMIVAYLINPNRG------KYNIDEL 401

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 GK     F + + +              + +F  Y K + E   +  + L    
Sbjct: 402 -ILEYTGK-----FYENAEN------------INFYMFELYEKLNKELKEKELENLY--F 441

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   + + G +++++ +  L + I+ E  K+ E I  +      +      L
Sbjct: 442 DIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEF-NINSPKQL 500

Query: 242 RMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
              L+   G+        +  T   +L    I       ++N    +      L  L + 
Sbjct: 501 AEVLYDRLGLKTRKRGKKARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPLRDY 560

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           ++    R+        A  TGR        QN+P                          
Sbjct: 561 INPETKRIHTKWSQTVAG-TGRIVSSEPNLQNIP------------------------VK 595

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G  ++ +R   I  NG   + AD + IE R+LA ++ +   IKAF +G+DI+  T ++ F
Sbjct: 596 GEWAEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASEIF 655

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           + P + V+ E R I K +   +                G+     S+++K          
Sbjct: 656 SIPENAVTDEHRRIAKTVNFGI--------------SYGISPFGLSESIK---------- 691

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                               +     E + + +  ++  V +  ++              
Sbjct: 692 --------------------IPYEKAEELIELYFLRYPMVRKFIEETISFAQKNGYVRTL 731

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                       R     ++     +L     Q  R        
Sbjct: 732 F--------------------------GRIRPLPEINSPNQFLR---MQSERMA------ 756

Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-L 650
               VQ  + DI+   M          K    I+L +HDEIV E        V  +    
Sbjct: 757 VNARVQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIEKVSEIVQNE 816

Query: 651 MTKNPSWAKGLPLKAEGYEAKR 672
           M     ++  +PL+   +    
Sbjct: 817 MK---DFSLSVPLEVNVFSGNS 835


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 92/640 (14%), Positives = 173/640 (27%), Gaps = 148/640 (23%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           T  +     +   L D+++  + ++      L K                ++        
Sbjct: 368 TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGL 424

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S           + L K    + LI      S        +               +   
Sbjct: 425 S----------QKILFKEVLKETLIENIIIESAKIVINFISLYKQTIL--------ELKD 466

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T  L+       D +  +  +   +   G  ++ + + +L      E  KL+E+I  L
Sbjct: 467 NKTFRLYS------DIDLPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIFAL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281
           +     +      L   LF    +          S  T   IL   +       DL+L  
Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 579

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +       ++L + + +      T     ++ TGR S      QN+P          
Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIP---------- 629

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                               + +R   IA  G KL+ AD + IE R+L+ IA  D   +A
Sbjct: 630 --------------TRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F N +DI+  T  + FN    +++ E R   K +                    G+    
Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A +  +         K + A+++GV +  
Sbjct: 719 ---------------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYM 751

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +                                  + ++     R+     +        
Sbjct: 752 EQTKAFA--------------------------SSNGYVTNFFGRKCFVPLIHDKK---- 781

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635
                  R            +Q  + DI+   M N        K    +VL +HDE++ E
Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            P      +   +  +M    S    +P+  E      + 
Sbjct: 835 APIDEVEIITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 112/696 (16%), Positives = 194/696 (27%), Gaps = 166/696 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-PSDLLQY 60
           S LF+D ET S                 I L     ++E V + D  E  +     L   
Sbjct: 23  SYLFLDTETVSE---------------KIRLVQLG-NNEDVFIVDLFETGSYGVDFLKDL 66

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSS-----LKNAC 113
           L D+ +  V HN  ++     +     I       T + ++  G     S     +    
Sbjct: 67  LVDKGI--VGHNLKYDLKFLYRY---GIEPYAVFDTMIASQLLGELDRHSLQKVAMHYLG 121

Query: 114 LALNFSEHLTKM---EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             L+ S  ++        K  +                  + + +     E        T
Sbjct: 122 EVLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEE--TLLKTRT 179

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             +F    P++  E         +   G  +D+  +  L     +    L++ +++    
Sbjct: 180 SRVFGLKNPVAIIEMAFVQEVAKLELNGIGVDIKELEDLIREYKK---NLNKKVMEFMMH 236

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287
                     L   L    G+DL    +    T   ILS     +  + ++  R+     
Sbjct: 237 YRIDPLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIHHKPVQMILEIRMTKKLL 296

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              KL+ +   V  DG +    +  GA  TGR S      QN+PR               
Sbjct: 297 --DKLDEIRSFV-KDGSVYPEFKQIGA-ITGRMSSLNPNVQNIPRD-------------- 338

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R    A  GK LV++D + IE R+ +   G++  IKAF  G+D
Sbjct: 339 ----------------LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKD 382

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++  T +       + +SKE+R + K +   L Y   A+     A   G+D         
Sbjct: 383 LHRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGID--------- 433

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                         L     + ++  +    +   +  + +   
Sbjct: 434 ------------------------------LSVDDAQKIRDRFFEYFRSFKEWHERVKRE 463

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
              +    G     R                                             
Sbjct: 464 LKQLGGSRGYTLLGRSYVAHTF-------------------------------------- 485

Query: 588 MRERTYGGKLTENIVQAISRDILCEG--M----KNATKNGYDIVLTVHDEIVSETPDTPY 641
                         +Q    D+L     M        K    +V  VHDEIV E      
Sbjct: 486 -------PDAVNYPIQGTGADLLKLSVLMFDAEIKREKIEAHVVNLVHDEIVVECQMEKA 538

Query: 642 FSVGTLCSL-MTKNPSWAKG-LPLKAEGYEAKRYRK 675
             V  L    M          +P++ E    +R+ K
Sbjct: 539 QLVRDLLERAMKHAGRVVLKQVPVEVESTINERWLK 574


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/649 (15%), Positives = 175/649 (26%), Gaps = 139/649 (21%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
                    A       ++ D     V HN+     +F +  G  I       T++ A  
Sbjct: 384 WFEPSALDEADERAWAAWIADPDRPKVLHNAKGAMRVFPEH-GWSIAGVTM-DTALAAYL 441

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L+         +G   +A     + ++          +     
Sbjct: 442 VKPGRRSFALDALSVEYLHRELAPAAAADG--QLAFGADDTAEAEALMTQARAVLDLGDA 499

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F E  K D    REL          E     L   +   G   D D +  +++  A   +
Sbjct: 500 FAE--KLDEVGARELLH------QVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQ 551

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN------ITQ 272
           +  ++          +      L+   F    +     ++    +              +
Sbjct: 552 QAVKEAHASVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHE 610

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L   ++ +R  +   +   +  L + + +DGR+  T     A  TGR S      QN+P 
Sbjct: 611 LPVIMLRHREQARLRST--VEGLIKTIGADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP- 666

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAW 391
                                          +R   +   G + L+ AD + IE RV+A 
Sbjct: 667 -----------------------VRTDEGRAIRHGFVVGEGFEALMTADYSQIELRVMAH 703

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   I+AF +GED++ T  ++ F      V  E R   K M   L            
Sbjct: 704 LSEDAGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGL------------ 751

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               GL     SQ +                                       +   + 
Sbjct: 752 --AYGLSAFGLSQQLNIDPG------------------------------EARGLMDTYF 779

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +  GV    + + +           +                           RR    
Sbjct: 780 ERFGGVRDYLRRVVDEARATGYTETML--------------------------GRRRYLP 813

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
           D+  D      A  ++              +Q  + DI+   M N  +          ++
Sbjct: 814 DLNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLNVDRALTEAGLASRML 864

Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           L VHDEIV E        V TL    M+         PL       + +
Sbjct: 865 LQVHDEIVLELAPGERDRVETLVRAQMSAAADLRA--PLDVSVGVGQNW 911


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/635 (14%), Positives = 167/635 (26%), Gaps = 141/635 (22%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107
             A     + +L D     V HN+     +F +     +       T++ A         
Sbjct: 169 DEADERAWVAWLADAERPKVLHNAKGAMRVFAEH-DWSVAGVSM-DTALAAYLVKPGRRS 226

Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             L       L          +G   +A       ++          +     F      
Sbjct: 227 FDLDALSLEYLGRELAPPAAADG--QLAFGADDGAEAEALMVQARAVLDLGSAFEGRLAE 284

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
              A          L D E     L   +   G   D   +  ++++ A   ++  ++  
Sbjct: 285 VGAADL--------LRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAH 336

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLI 278
                   +      L+  LF   G+                L  + + ++       ++
Sbjct: 337 GAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTD--NELPVIM 393

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P       
Sbjct: 394 LRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP------- 444

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDW 397
                                    +R   +   G + L+ AD + IE RV+A ++ +  
Sbjct: 445 -----------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAG 487

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +GED++ T  ++ F      V  E R   K M   L                GL
Sbjct: 488 LIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGL--------------AYGL 533

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                SQ +   +                                   +  A+  +  GV
Sbjct: 534 SAFGLSQQLNIEAG------------------------------EARALMDAYFERFGGV 563

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
               +   +                                       RR    D+  D 
Sbjct: 564 RDYLRRAVDEARATGYTATLF--------------------------GRRRYLPDLNSDN 597

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDE 631
                A  ++              +Q  + DI+   M          G    ++L VHDE
Sbjct: 598 RQRREAAERM---------ALNAPIQGTAADIVKIAMLKVDGALRDAGLASRMLLQVHDE 648

Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
           IV E           +    M+        +PL  
Sbjct: 649 IVLEVAPGERGVAEEIVRREMSDAVD--LRVPLGV 681


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/629 (13%), Positives = 152/629 (24%), Gaps = 127/629 (20%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             L  YL+        H++     +     GI +       T++ A           LK 
Sbjct: 369 KALADYLQSTQ-PKFLHDAKTTYHMLAG-RGITLGGIA-HDTALAAYLLNPGQRTYDLKT 425

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                                      +      D T  N +             +    
Sbjct: 426 TYQRHLHRTLEI-------------TETGQLSLLDITNTNTLITAAAAILELAATLPTKL 472

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L    D E  L  +   +   G  +D+  + +  +       + +     +    
Sbjct: 473 ATINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDP 532

Query: 232 IRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN--ITQLAKDLILNRLASSG 286
                    L++ LF   G+           T    +            + +L       
Sbjct: 533 NLLLTSPKQLQVVLFETLGLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQK 592

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L  L +AV  DGR+  T Q    + TGR S      QN+P               
Sbjct: 593 MKTT-LEGLIKAVGDDGRIHTTFQQTM-TSTGRLSSTDPNLQNIP--------------- 635

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                        A   +RS          L+ AD + IE RV+A ++ +   I A+ NG
Sbjct: 636 ---------IRTPAGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNG 686

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           ED++    AK F+ P   V+ E R   K +   L Y               L++      
Sbjct: 687 EDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLVYG-----LSAFGLSQQLNIPAGEAK 741

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
               + F  +   + +   +  Q  +      L            R     +    +   
Sbjct: 742 QIMENYFHRFGGVKHYLDTVVTQARKDGYTATLFDR---------RRYLPELTSTNRATR 792

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E                                        ++    +  +    N    
Sbjct: 793 ENAERAALNAPIQGTAADII---------------------KIAMLRIHHELKKTN---- 827

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                                                 ++L VHDE+V E       +V 
Sbjct: 828 ----------------------------------AKSRVLLQVHDELVVEIAPGELTTVK 853

Query: 646 TLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            L    M    +    +PL+        +
Sbjct: 854 KLIEHEMDNAIT--LKVPLEVSTGHGPNW 880


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 94/640 (14%), Positives = 173/640 (27%), Gaps = 148/640 (23%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           T  +     +   L D+++  + ++      L K         K      ++        
Sbjct: 368 TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDIKAIEDLELMQYALSAGL 424

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S KN            K    +  I      S        T               +   
Sbjct: 425 SQKNL----------FKEVLKETWIENIIIESAKIVINFITLYKQTI--------WELKD 466

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T  L+  +      +  +  +   +   G  +D + + +L      E  KL+E+I  L
Sbjct: 467 NKTFRLYSNI------DLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFAL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281
           +     +      L   LF    +          S  T   IL   +       DL+L  
Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 579

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +       ++L + + +      T     ++ TGR S      QN+P          
Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP---------- 629

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                               + +R   IA  G KL+ AD + IE R+L+ IA  D   +A
Sbjct: 630 --------------IRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F N +DI+  T  + FN    +++ E R   K +                    G+    
Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A +  +         K + A+++GV +  
Sbjct: 719 ---------------------------AFGLAKQLNVTHGEASAYIKKYFAEYKGVQEYM 751

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +                                  + ++     R+     +        
Sbjct: 752 EQTKAFA--------------------------SSNGYVTNCFGRKCFVPLIHDKK---- 781

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635
                  R            +Q  + DI+   M N        K    +VL +HDE++ E
Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            P      +   +  +M    S    +P+  E      + 
Sbjct: 835 APIDEVEIITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/503 (17%), Positives = 151/503 (30%), Gaps = 118/503 (23%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +  ++   G  +DLD      + ++ +  +L   I++       + R +  L
Sbjct: 488 DLEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHAGEPF-NIRSSQQL 546

Query: 242 RMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
              LF    I   + +      T   +L          + IL            L  L +
Sbjct: 547 AAILFDKLDIKEGNKTATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRSTYLEPLPK 606

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  D RL        A+ TGR S      QN+P                          
Sbjct: 607 LVGEDSRLHTHFNQL-ATATGRLSSSQPNLQNIP------------------------IR 641

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G     +R+C IA  G  L  AD + IE RVLA  +G+   I AF N EDI+  T A   
Sbjct: 642 GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLT 701

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           +     V  ++R   K +                    G+                    
Sbjct: 702 DKQPQDVLADERRNAKTINF--------------GLIYGMGP------------------ 729

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                        + A +  +     +   + +  K   +   +  + +           
Sbjct: 730 ------------QKLARELDITVNQAKEFIERYFDKLATLKAYYDTIVKDAESHG----- 772

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                 +   + RR +  ++    +      SQ  R+       
Sbjct: 773 ---------------------FVTTLAGRRRLLPELHSRNT---QLVSQARRQA------ 802

Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
              ++Q  + DI+   M  A K       G  ++L VHDE++ E P+         L ++
Sbjct: 803 VNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRPAGERLKTI 862

Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673
           M      A  +PLK +    + +
Sbjct: 863 MQSVADLA--VPLKVDLGLGRTW 883


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/633 (14%), Positives = 170/633 (26%), Gaps = 148/633 (23%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L D+++  + ++      L K                ++        S      
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLS------ 425

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                               F +   ++   +   A+          Y +   E      
Sbjct: 426 ----------------QKNLFKEVLKETWIENIIIASAKIVINFIALYKQTIWELKDNKT 469

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            RL    D    +  +   +   G  +D + + +L      E  KL+E+I  L+     +
Sbjct: 470 FRLYSNID--LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-N 526

Query: 235 SRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSA 288
                 L   LF    +          S  T   IL   +       DL+L     +   
Sbjct: 527 IGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLK 586

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               ++L + + +      T     ++ TGR S      QN+P                 
Sbjct: 587 NTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP----------------- 629

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                        + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI
Sbjct: 630 -------IRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDI 682

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T  + FN    +++ E R   K +                    G+           
Sbjct: 683 HTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---------- 718

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   A +  +         K + A+++GV +  +      
Sbjct: 719 --------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA 758

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
           +                                    R+     +               
Sbjct: 759 SSNGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAE 787

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642
           R            +Q  + DI+   M N        K    +VL +HDE++ E P     
Sbjct: 788 RAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVE 841

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +  +M  + + A  +P+  E      + 
Sbjct: 842 IITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/666 (16%), Positives = 186/666 (27%), Gaps = 129/666 (19%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERIL 79
                E A          D      D + Q A   ++L   LRD     V H        
Sbjct: 401 PGRIGEDAAALAI---VRDGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFKAALKA 457

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFC 136
                G+++       TS+             L          E  T + +   L   F 
Sbjct: 458 LS-ARGLELEGV-VDDTSISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFD 515

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                +       A  V A   + E   ++ +A  EL   L      E  +  +   +  
Sbjct: 516 GDDSAAAGELVHAAAVVHALSRYFEAELKERKAE-ELLSTL------ELPVSQVLADMEL 568

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  ID+  + +    +A+      E         + +      L+  LF    +     
Sbjct: 569 AGIAIDMQRMDEQLADLAKVIDNAQELAFAAIGHEV-NLGSPKQLQTVLFDELQLPKTKK 627

Query: 257 SEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +        +LK++L  +    L   L+ +R +S       L +L ++V+ DGR+  T 
Sbjct: 628 IKSGYTTDAASLKNLLEKTGHEFLV-QLMAHRESSKLRQ--MLESLKKSVAEDGRIHTTY 684

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
               A  TGR S      QN+P                                VR   +
Sbjct: 685 AQNVA-ATGRISSNNPNLQNIP------------------------IRSEEGRRVRGIFV 719

Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
            S G   L+ AD + IE R++A ++G+   I+A+ +GED++    +  F+ P D+V+   
Sbjct: 720 VSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVTSAM 779

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R+  K M   L Y        +      L++            F+ +     +   + DQ
Sbjct: 780 RSKVKAMSYGLAYG-----LTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQ 834

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                    + G          R     +    + L E    +        +        
Sbjct: 835 ARIDGFTATIEGR---------RRYLPDLTSTDRQLRENAERIALNSPIQGSAADII--- 882

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             +     V  +                          Q     
Sbjct: 883 ------------------KRAMLGVHAELKA-----------------------QG---- 897

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
            L   M           L VHDE+V E       +V  L    M         +PL  + 
Sbjct: 898 -LKSRML----------LQVHDELVLEVAAGEREAVEKLVTEQMGSAAD--LSVPLDVQI 944

Query: 668 YEAKRY 673
                +
Sbjct: 945 GVGPSW 950


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/622 (15%), Positives = 192/622 (30%), Gaps = 144/622 (23%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA---LNFSEHLTKMEEGKALIA 133
             +++GI +       T +            SL+ A      L+F E  ++  +G   + 
Sbjct: 442 LLESVGITL-PTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGT--LD 498

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                   +   D  + +      L            +     L+     E  +  +   
Sbjct: 499 LDDMDGSSNTQADELQRHAAIVDMLA---NVLADLLDQRAQFGLLKSI--ELPVSKVLYG 553

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G ++D+  + ++++  A + ++  ++I   + G   + +    L+  LF   G+  
Sbjct: 554 MEHAGAQVDMIRLTEMRDQFAADARQA-QEIAWESAGERVNLQSPKQLQKILFEDMGLKP 612

Query: 254 VDMSEG----TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS 301
              ++     T  + L       L  D        L+ +R  +    I  + TL +A + 
Sbjct: 613 TKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNP 670

Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DGR+  T +   A  TGR S      QN+P                            A
Sbjct: 671 RDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAA 705

Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  
Sbjct: 706 GREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGI 765

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+++++ +QR+  K M   L Y        T                             
Sbjct: 766 PVEEITSDQRSHVKAMSYGLAY-----GLSTYGL-------------------------- 794

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                        A + K+     E ++  + A    V +  + L               
Sbjct: 795 -------------AQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIY- 840

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     RR  +  +K     +  A  +             
Sbjct: 841 -------------------------GRRRYFPGLKSPNRAVRDAAERA---------ALN 866

Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
             +Q  + DI+   M  A+           I+L +HDE+V E           L    M 
Sbjct: 867 APIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAME 926

Query: 653 KNPSWAKGLPLKAEGYEAKRYR 674
              + A  +PL A       ++
Sbjct: 927 HAVTMA--VPLDASTGIGSDWQ 946


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/597 (13%), Positives = 155/597 (25%), Gaps = 129/597 (21%)

Query: 91  KRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                  +      + S     K     L       +   GK          + +     
Sbjct: 394 GDVFDIKIANYLIDVTSKSEIDKIVFNYLGEIISSNEEIYGKGAKRSLPTQEVLNS---- 449

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                  A  +             E    L      E  +  +   +   G  +    + 
Sbjct: 450 --YIAKIAASILEVKPLMIKSLEEENMLDLYKNI--EIKVARVLANMEFEGIHVSKKALD 505

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++     +  K L+  I  L      +      L + LF   G+ +V  ++    T   +
Sbjct: 506 EMSHEFDERIKVLEGSIYTLAGSEF-NIASPKQLGVVLFEDLGLPVVKKTKTGYSTAVEV 564

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L           LI+     +         L + ++ +G++    +    ++TGR S   
Sbjct: 565 LEQLQYKHDIIPLIMEYRTLTKLNSTYAKGLVKDITREGKIHTRYEQT-LTQTGRLSSVN 623

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P                                +R   I  SN + ++  D + 
Sbjct: 624 PNLQNIP------------------------TRIEEGKKIRKAFIPASNDRVILSIDYSQ 659

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA IA +   I AF +  DI+  T +     P+D+V+   R   K +   + Y  
Sbjct: 660 IELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYG- 718

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L                                        +     
Sbjct: 719 ----ISDFGLSNNL---------------------------------------GITRKRA 735

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +   + +    +GV +   D+ +            +                        
Sbjct: 736 KEFIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYN------------------------ 771

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618
             RR    ++      +                     +Q  + DI+   M +A      
Sbjct: 772 --RRRSLPEINAKNKII---------ANLNARIAMNTPIQGTAADIIKIAMISAYNYIEE 820

Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            K    ++L VHDE++ +            + ++M +  +    + LKAE      +
Sbjct: 821 SKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAAN--LDVKLKAEASSGPSW 875


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/707 (15%), Positives = 208/707 (29%), Gaps = 189/707 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET    P              + L   A +D PV + D         +L+  +
Sbjct: 28  KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 77

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----SLKNAC-LA 115
              + + V  N+ F+       + +DI       T + ++           +LK      
Sbjct: 78  LSTSGVKVFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN      +                       T     +  +    Y  RD E    L K
Sbjct: 135 LNEDLDKEE----------------------QTSNWQGELTESQILYAARDAEILLRLRK 172

Query: 176 RLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +IP           + E         +  RG  +D     +L E    ERK   +++  
Sbjct: 173 VMIPQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYT 232

Query: 227 LTDGIIR-------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
             +  +              +      +   L    GI +   ++  L     + +    
Sbjct: 233 YVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEH-GIPVAATAKQDL-----YPHRRHP 286

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +L+   ++ S    L   +  +    GRL        A  +GR S      Q +PR
Sbjct: 287 LVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPR 345

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                           R+C  A  G+KL++AD + IE RV A I
Sbjct: 346 DS----------------------------EFRACFAAPPGRKLILADYSQIELRVAAQI 377

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I A+  GED+++ T +   + PI+++S ++R   K +   L +  GA   +  A
Sbjct: 378 SGDTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYA 437

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                       ++        ++ +  
Sbjct: 438 QQN--------------------------------------YGVEMSLEQATEFRERFFK 459

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            + G+ +  + +                                       + R+ VY +
Sbjct: 460 AYTGIHRWHQSIKAHLPKEG----------------------------RTLAGRKFVYYE 491

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNATKN---GYDIVLTV 628
             G   Y NT                   VQ  + DI+ + +     +       IV  V
Sbjct: 492 KAGLPGYYNT------------------PVQGTAADIVKKALGLLIERLAGTDTYIVGIV 533

Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
           HDEI+ E+P     ++   L S M +   +    +P K +   ++ +
Sbjct: 534 HDEILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 580


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 182/633 (28%), Gaps = 141/633 (22%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LAL 116
           L D       H++    + F   LG  +       T + A           L +     L
Sbjct: 385 LADPQQPKALHDAKGPLLGFL-ELGWTLAGLT-SDTQLSAYLARPDQRSYDLADLTVRYL 442

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  + + G            D        A  ++A  +       D E  ++    
Sbjct: 443 RRELRNEEADNG-------QLSFDDVEGGPAADATMLRARAIADLADTLDAELAKQAGTA 495

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L+   D E  L  +   +   G  +D   + KL+E  A   +       ++    I +  
Sbjct: 496 LLA--DVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKEI-NLG 552

Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289
               L++ LF    +     ++        +L+++   +    LA  L+ +R A+     
Sbjct: 553 SPKQLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAY-LLAHRDATRLRQT 611

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +  L + +S  D R+  T     A  TGR S      QN+P                 
Sbjct: 612 --VEGLLKTISPRDARIHTTFNQTIA-ATGRLSSTDPNLQNIP----------------- 651

Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R   +   G + L+ AD + IE R++A ++ ++  I AF +GED
Sbjct: 652 -------IRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSGED 704

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            +  T A+ F+    +V++E RA  K M   L                GL          
Sbjct: 705 FHSVTAARVFSVQPGEVTQEMRAKIKAMNYGL--------------AYGLS--------- 741

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                    + + K+     + +   +  +  GV    + +   
Sbjct: 742 ---------------------AYGLSQQLKIGVDEAKGLMDEYFERFGGVRDYLRSIVIE 780

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                     +                           RR    D+  D         ++
Sbjct: 781 AGKSGYTETIL--------------------------GRRRYLPDLTSDNRQRREMAERM 814

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641
                         +Q  + D++   M               ++L VHDE+V E      
Sbjct: 815 ---------ALNAPIQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGER 865

Query: 642 FSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            ++  L    M      A  +PL       + +
Sbjct: 866 EALEELVRRDMGSAVEMA--VPLDVSVGVGRTW 896


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/724 (13%), Positives = 192/724 (26%), Gaps = 161/724 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQS------- 51
             +  DIE        ++     A       I   + +  +          ++       
Sbjct: 23  KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82

Query: 52  -AMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
             M + L  +   +E+++ VAHN  FE     +  GI I  +    T       G   + 
Sbjct: 83  HRMIAWLKGFVFHNESLIKVAHNISFESSFLCEY-GIVIK-EPVFDTM-----LGSMLTF 135

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K+        +   K+   K +                    H +  +    Y   D + 
Sbjct: 136 KSFGEFRTLRDSGLKLLA-KEIFNEDLPSFSHVVNGTHFDNLHSEHKETVR-YACADSDY 193

Query: 170 TRELFKRLIPLSDGERDLWLLDQ------------TINDRGYRIDLDLVLKLQELIAQER 217
              L+   +   +       L               +   G  ++ +L+ +      +E 
Sbjct: 194 ALRLYNWCMEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEEL 253

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMY---LFLITGID----LVDMSEGTLKSILSHSNI 270
           +    +I+   +  + +       + +   LF    +                 L     
Sbjct: 254 EFCKREILSFANREV-NLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEE 312

Query: 271 --------TQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321
                        + I      S      +  L + +    G++       GA  TGR+S
Sbjct: 313 WCIRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGAE-TGRFS 371

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QNLPR++                             +R   I S     +  D 
Sbjct: 372 SRNPNLQNLPRKDNDHLG------------------------IRKLFIPSPNHVFLDFDF 407

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKV 434
           + IE RV A+   +   I AF    DI+  T +  +N P+++ +       K++R I K 
Sbjct: 408 SQIELRVGAYYCKDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKN 467

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
               + +    K  +    + G                                      
Sbjct: 468 CNFGVFFGLFPKGLQKTLMYKG-------------------------------------- 489

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              +    CE + +  +  +  +    KD  +  A                         
Sbjct: 490 GINISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRT---------------- 533

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                      RR    D+K         +    +            +Q  + DI+   M
Sbjct: 534 ----------GRRRYLKDMK---------SKDWNKRAVSERCALNTPIQGTAADIIKIAM 574

Query: 615 KNA----TKNGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGY 668
                   + GY   +L +HDE++ E  +     ++  +   M + P     +P+K E  
Sbjct: 575 ARILRELPERGYIKPLLQIHDELLFEVREDKVNEAIVFIKDCMERTPFKDFNIPIKVEYS 634

Query: 669 EAKR 672
               
Sbjct: 635 VGYN 638


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/648 (14%), Positives = 172/648 (26%), Gaps = 151/648 (23%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107
                     +L D     V H++     +F +  G+ +       T++ A         
Sbjct: 389 DEDDERAFADWLGDPERPKVMHDAKGLMRVFGEH-GMTVAGVAM-DTALGAYLVKPGRRT 446

Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +L       L                      + +S       A+     +      + 
Sbjct: 447 FALDALSLEYLGRE----------------LVPAQESDGQLAFGADDETQARTLMVEART 490

Query: 166 DVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++    L  RL  +      +D E     L   +   G   D + + +++   A   ++
Sbjct: 491 ILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQ 550

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI---TQL 273
              +          +      L+  LF    +     ++    T    L+        +L
Sbjct: 551 AVREAHAAVGHEF-NLGSPKQLQEVLFGGLNLPKTRKTKTGYTTDADSLAWLAGQTEHEL 609

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              ++ +R  +   +   +  L ++++ DGR+  T     A  TGR S      QN+P  
Sbjct: 610 PVLMLRHREQAKLRST--VEGLIKSIAPDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 664

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392
                                         +R   +   G + L+ AD + IE RV+A +
Sbjct: 665 ----------------------VRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHL 702

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  I AF +GED++ T     FN     V  E R   K M              +  
Sbjct: 703 SEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAM--------------SYG 748

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
              GL                                   + +  +       +   +  
Sbjct: 749 LAYGLS------------------------------AFGLSQQLGIEAGEARALMDTYFE 778

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
           +  GV      + E           +                           RR    D
Sbjct: 779 RFGGVRDYLHRVVEEARATGYTATML--------------------------GRRRYLPD 812

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626
           +  D      A  ++              +Q  + DI+   M    +          ++L
Sbjct: 813 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKIAMLGVDRALREAELTSRMLL 863

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            VHDEIV E        V  +    M          PL       + +
Sbjct: 864 QVHDEIVLELAPGEREPVEEILRREMAAAAQLRA--PLTVSVGVGRDW 909


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/693 (13%), Positives = 197/693 (28%), Gaps = 147/693 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57
           L ID E  +     K  +  Y + A I         + +D+ +          +  ++  
Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDLYF-PLNHGGLLAKNIDK 396

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112
              + ++ +  +  +++N           LGI      ++   +        + +     
Sbjct: 397 NLVVNFISELDIKFISYNFK----SLLN-LGIKFK-SMYMDMMIAYHLISSQTKIDPIIP 450

Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       K   GK  I      + D   Y    +  + A      Y  +  +  +
Sbjct: 451 ITEYSTLEPKDFKTAFGK--INVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYK 508

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L        + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 509 ILM-------ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287
             +      L   LF+   +     ++    T   +L            L+L+    +  
Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P                
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIP---------------- 663

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 664 --------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 IYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           ++  T  + FN    + VS+EQR I                                   
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIA---------------------------------- 741

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                     +  +  +         A + K+         K +  ++  V    +++ E
Sbjct: 742 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIE 791

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+   S +        T  SQ
Sbjct: 792 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 822

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641
             R           ++Q  + ++L + M         K    ++L VHDE++ E  +   
Sbjct: 823 AERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSV 876

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   +M       + + L       K +
Sbjct: 877 EKYSEILADIMKNTVQL-EDVKLNININIGKNW 908


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/622 (15%), Positives = 191/622 (30%), Gaps = 144/622 (23%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA---LNFSEHLTKMEEGKALIA 133
             +++GI +       T +            SL+ A      L+F E  ++  +G   + 
Sbjct: 441 LLESVGITL-PTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGT--LD 497

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                   +   D  + +      L            +     L+     E  +  +   
Sbjct: 498 LDDMDGSSNTQADELQRHAAIVDMLA---NVLADLLDQRAQFGLLKSI--ELPVSKVLYG 552

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G ++D+  + ++++  A + ++  ++I   + G   + +    L+  LF   G+  
Sbjct: 553 MEHAGAQVDMIRLTEMRDQFAADARQA-QEIAWESAGERVNLQSPKQLQKILFEDMGLKP 611

Query: 254 VDMSEG----TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS 301
              ++     T  + L       L  D        L+ +R  +    I  + TL +A + 
Sbjct: 612 TKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNP 669

Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DGR+  T +   A  TGR S      QN+P                            A
Sbjct: 670 RDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAA 704

Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  
Sbjct: 705 GREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGI 764

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+++++ +QR+  K M   L Y        T                             
Sbjct: 765 PVEEITSDQRSHVKAMSYGLAY-----GLSTYGL-------------------------- 793

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                        A + K+     E ++  + A    V +  + L               
Sbjct: 794 -------------AQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIY- 839

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     RR  +  +K     +  A  +             
Sbjct: 840 -------------------------GRRRYFPGLKSPNRAVRDAAERA---------ALN 865

Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
             +Q  + DI+   M  A            I+L +HDE+V E           L    M 
Sbjct: 866 APIQGSAADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAME 925

Query: 653 KNPSWAKGLPLKAEGYEAKRYR 674
              + A  +PL A       ++
Sbjct: 926 HAVTMA--VPLDASTGIGSDWQ 945


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 102/661 (15%), Positives = 192/661 (29%), Gaps = 143/661 (21%)

Query: 39  DEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D+   + D  E S    + L + L   + + V H++   R     + G  +    +  T 
Sbjct: 362 DKEALVIDPVELSPKQEEALGEVLATASSLIV-HDAKGARHALS-SRGWTLGGVEF-DTM 418

Query: 98  VLARTNGL---PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           + A           L++     L     + +  EG +  A F  G + + P         
Sbjct: 419 LAAYLAHPDQRSHKLEDVLSRVLGV---VIEEGEGDSE-ALFDLGDMGAGPSAAQVRAGK 474

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            A  L                  L  L+D E  L +L   + D G   D  ++  L + +
Sbjct: 475 LAAYLHPLASTLRSRLEESSEAAL--LTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDEL 532

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILS 266
            +      E         + +      L+  LF   G+            +   L  + +
Sbjct: 533 GKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTNADALADLHA 591

Query: 267 HS-----NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +             L+ +R          +++LS  V+SDGR+  T     A+ TGR +
Sbjct: 592 KTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ-VAAATGRLA 648

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380
                 QN+P                                +R   +A  G + L+ AD
Sbjct: 649 SSDPNLQNIP------------------------ARSADGMRIRGAFVAGEGFESLMSAD 684

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++G++  I+AF +GED++ T  +  F TP+ +VS E+R+  K     L 
Sbjct: 685 YSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLA 744

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y        +      L                                        +  
Sbjct: 745 YG-----LSSYGLAAQL---------------------------------------GIPV 760

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                ++  +  +   V    + L                                    
Sbjct: 761 PEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMF---------------------- 798

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
                RR    D++           +               +Q  + DI+   M N    
Sbjct: 799 ----GRRRYLPDLRSSNRQRREMAERA---------ALNAPIQGSAADIVKIAMINVVDA 845

Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                    +++ +HDE++ E       +V  +    M         +PL       + +
Sbjct: 846 LSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDRMATPVE--LSVPLDVAVGVGRSW 903

Query: 674 R 674
           +
Sbjct: 904 Q 904


>gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
 gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
          Length = 886

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/652 (12%), Positives = 172/652 (26%), Gaps = 119/652 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L  +   D    L  R       + L + L D  V     N+  + +   + LG+D+   
Sbjct: 339 LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR-LGVDLAGV 397

Query: 92  RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            +    + +       +  +                +   GK               +  
Sbjct: 398 DF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 456

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +A  ++  +    Y +        L++      D ER L  +   +   G  +D   + 
Sbjct: 457 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 509

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           ++   + +   +L++ I +       +      L + LF    + ++  ++    T   +
Sbjct: 510 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 568

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L            IL     S      +  L + +  D +   T      + TGR S   
Sbjct: 569 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 628

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383
              QN+P                                +R     S  G K+  +D + 
Sbjct: 629 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 664

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442
           +E RVLA + G+      F  G+DI+  T  + F+    D+V+   R   K +   + Y 
Sbjct: 665 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 724

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                         + + +   +    S F+++   E +   + +   +    + L    
Sbjct: 725 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 778

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +             +                            I +
Sbjct: 779 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 815

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              R       +G  + +                                 +        
Sbjct: 816 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 839

Query: 623 DIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                   E+V E P +        + S+M         +PLK E      +
Sbjct: 840 --------ELVFEAPEEEIAILEELVPSIMDSAVK--LDVPLKVESKSGATW 881


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 99/652 (15%), Positives = 177/652 (27%), Gaps = 157/652 (24%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSK 91
           YA  D  V L            L   L  +  + V     F+       L +D   I   
Sbjct: 326 YAVQDGQVFL-------PGTDRLAALLDSDADLWV-----FDAKPL-YHLALDRGGIGKA 372

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                 + A      +S                    K L   +   +  +         
Sbjct: 373 IHFDGKLAAYLLNPSAS----------------GYAVKNLAGEYDVPAAFTCEAAPDAGV 416

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
                                  ++L    + E  L  +   +   G+ +D D +    +
Sbjct: 417 LAALLDKLAAALDESG------QRKLHD--EMELPLARVLADMERIGFAVDADGIRAFGD 468

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHS 268
            +  E   + + I +       +      L   LF   G+     +     T  + L   
Sbjct: 469 SLRGELDGILQSIYEEVGYEF-NVNSPKQLGEALFDKLGLPPRKKTSRGYSTDAATLESL 527

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                  D IL     +      +  L  A ++DGR+  T     A RTGR S      Q
Sbjct: 528 RPYSPVIDQILKYRTYAKLLSTYVEGLLSAQAADGRVHSTFIQTEA-RTGRISSTEPNLQ 586

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P                                +R   +A  GK+LV AD + IE R+
Sbjct: 587 NIP------------------------IRTELGSRLRGFFVAGAGKELVDADYSQIELRI 622

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA I G++   +AF +G DI+ +T AK ++ P  +V+ + R+  K +   +         
Sbjct: 623 LAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFGIM-------- 674

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                       +    +     +   K
Sbjct: 675 ------------------------------------YGKGAFSLSKDLDVSVKEADAFLK 698

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + A    V    +D                                    +     RR 
Sbjct: 699 TYLATFPKVDGYMQDCIAHAKEKGY--------------------------VETLFGRRR 732

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622
              ++      +  +  ++ R            +Q  + DI+   M +        K   
Sbjct: 733 ALPELASSNFQVRASGERMAR---------NTPIQGTAADIIKLAMVHVWQRLRDEKLEA 783

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E P+     V  +    M +   +   +PL  +    K +
Sbjct: 784 RLLLQVHDELIVEAPEAEVEEVKRVLREEMEQVVQY--SVPLTTDVGTGKTW 833


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 183/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+D+   L+    +   + +E   +     I +      L+  LF    +     +
Sbjct: 507 GIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 183/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+D+   L+    +   + +E   +     I +      L+  LF    +     +
Sbjct: 507 GIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/644 (15%), Positives = 172/644 (26%), Gaps = 129/644 (20%)

Query: 44  LWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
             D    T   ++   L  +L D       H+     +   +  G  +       T++ A
Sbjct: 378 WIDPTQLTAGDSVA--LGDWLADPDRAKAGHDLKGPMLALAEA-GFTLAGVT-SDTALAA 433

Query: 101 RTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                      L +  L     E           +         S   D   A+ ++A  
Sbjct: 434 YLALPGQRSFDLADLALRYLHRELK-SDAPSNGQLTLDG-----SGEADEAEADAIRARA 487

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                   D +  R    RL+   + E  L  +  T+   G   D D +L+LQ+    E 
Sbjct: 488 ALELADALDGDLERRSAARLLR--EMELPLVTILATMERAGIAADEDHLLELQKHYGGEV 545

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---IT 271
             +         G   +      L+  LF    +           T    L+        
Sbjct: 546 SDVAAQAH-GIVGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDH 604

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            L   L+ +R  +       +++L   +   GR+  T     A  TGR S      QN+P
Sbjct: 605 PLIPVLLHHRDVARLK--TVVDSLIPMIDDAGRIHTTFNQMIA-ATGRLSSTDPNLQNIP 661

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
                                           +R   +   G   L+ AD + IE R++A
Sbjct: 662 ------------------------IRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMA 697

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+   I+AFA+GED++    A+AF  P+ +V  E R   K M   L Y         
Sbjct: 698 HLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYG-----LSA 752

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L +       +  + F  +         + DQ       + ++G          
Sbjct: 753 FGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGR--------- 803

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +        +    +        +                    +L   R L  
Sbjct: 804 RRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKI------------AMLGVGRALR- 850

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                              SRD+    +               D
Sbjct: 851 -----------------------------------SRDLSSRLLLQVH-----------D 864

Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E        V  L    M         +PL+      + +
Sbjct: 865 ELVLEIAPGERAEVEALVRAEMGSAYE--MSVPLEVSVGAGRTW 906


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/658 (13%), Positives = 182/658 (27%), Gaps = 135/658 (20%)

Query: 32  LCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             A +   +   L         ++   + + ++ R+     + +N            G++
Sbjct: 366 GFAVSSLKDDFYLPLGHTPLFHKNLDFNKIKEFFRNSDSKFITYNFK----PLLN-EGVE 420

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I +       + A       + +         E   +   G  +     K   ++P    
Sbjct: 421 IKNMDV-DLMI-AYHLISSQTKEGV-------EIPLEQLSGIDIAPYSEKFGKEAPGNLS 471

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDG-ERDLWLLDQTINDRGYRIDLDL 205
           T        +      +    A  E+  + L+ + +  E  L  +   +  +G +ID   
Sbjct: 472 TEEYGKFLTERSKGIMETYGIAMEEIKGKDLLEVLEKTEMPLIKVLSAMERKGIKIDPVY 531

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262
             K ++ +      L + I ++      +      L   LF    +D V  ++    T +
Sbjct: 532 FAKYEKELEILLSDLQKKIFEIAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDE 590

Query: 263 SILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321
            +L             IL     +      ++ L + V S  RL  T    G + TGR S
Sbjct: 591 EVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLVDSKDRLHTTFNQIG-TTTGRLS 649

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                                +R   IA +G  L+  D 
Sbjct: 650 SSNPNLQNIP------------------------VKTDEGMKIRQGFIADSGNVLMGIDY 685

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RVLA ++ ++  I A+ N ED++  T  K F                        
Sbjct: 686 SQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF------------------------ 721

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         G   +   +            +  +  +         + +  +   
Sbjct: 722 ------------ELGEGEEVSREQRII-------AKTINFSIIYGKTAFGLSKELGIPQK 762

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   +  ++  V    + + +              RR+        +  K      
Sbjct: 763 EATDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEGIISKNKNIKN----- 817

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619
                                   Q  R          +++Q  + +IL + M    K  
Sbjct: 818 ------------------------QAERMA------VNSVIQGTAAEILKKVMIEIFKVI 847

Query: 620 ---NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E  +       T+   +M  +  +   + L       K +
Sbjct: 848 DGKEDISLLLQVHDELIFEIKEEKVEEYRTIIENIMRNSVKF-NDVVLDINTNIGKNW 904


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 95/693 (13%), Positives = 196/693 (28%), Gaps = 147/693 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57
           L ID E        K  +  Y + A I         + +D     +       +  ++  
Sbjct: 340 LIIDSE--DALNEQKEYLSNYKKIASIYYESLGIILSTED-KNLYFPLNHGGLLAKNIDK 396

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112
              + ++ +  +  +++N           LGI      ++   +        + +     
Sbjct: 397 NLVVNFISELDIKFISYNFK----SLLN-LGIKFK-SMYMDMMIAYHLISSQTKIDPIIP 450

Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       K   GK  I      + D   Y    +  + A      Y  +  +  +
Sbjct: 451 ITEYSTLEPKDFKTAFGK--INVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYK 508

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L        + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 509 ILM-------ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287
             +      L   LF+   +     ++    T   +L            L+L+    +  
Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P                
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIP---------------- 663

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 664 --------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 IYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           ++  T  + FN    + VS+EQR I                                   
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIA---------------------------------- 741

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                     +  +  +         A + K+         K +  ++  V    +++ E
Sbjct: 742 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIE 791

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+   S +        T  SQ
Sbjct: 792 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 822

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641
             R           ++Q  + ++L + M         K    ++L VHDE++ E  ++  
Sbjct: 823 AERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEESSV 876

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   +M       + + L       K +
Sbjct: 877 EKYSRILADIMKNTVQL-EDVKLNININIGKNW 908


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 102/632 (16%), Positives = 179/632 (28%), Gaps = 149/632 (23%)

Query: 55  SDLLQYLRDETVMC-VAHNSLFERILF-KKTLGIDIPSKRWI-CTSVLARTNGLPSSLKN 111
            DLL+ L ++ V   V     F+      + +         +    + A      +S   
Sbjct: 362 EDLLRLLDNKDVTLDV-----FDSAPLYARAMAAGGWGSSIVWDGKLAAYLLDASAS--- 413

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                N SE +                         T      A  L   + K   E T 
Sbjct: 414 ---KYNLSELIISYRA----------------DAAFTCEKWPDAGALADLFAKMKTEITA 454

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L    D E  L  +   +   G  +D + + K    +  E + +   I   T   
Sbjct: 455 LEEDSLYN--DIEFPLAQVLADMTRIGILVDKEGIEKFGVKMRSELEDVLTRIHMETGSA 512

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSA 288
             +      L   LF   G+     +     T    L       L +D IL   A     
Sbjct: 513 SFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLEALRDYPLVED-ILQYRAYQKLN 571

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              +  L + ++ DGR+        A RTGR S      QN+P                 
Sbjct: 572 STYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP----------------- 613

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R+  +A  G  LV AD + IE R+LA + G++   +AF  GEDI
Sbjct: 614 -------IRTELGSQLRAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQAFLTGEDI 666

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + +T AK +  P+++V+   R+                                      
Sbjct: 667 HRSTAAKIYGLPLEQVTPRLRSSA------------------------------------ 690

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                   +A +  +         +    +     +   K + A    V           
Sbjct: 691 --------KAINFGIMYGKGAYSLSKDIGVSVKEADAFLKNYLATFPKVSGYMDKTISDA 742

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                          +     RR    ++  +   +  +  ++ 
Sbjct: 743 RSCGY--------------------------VSTLFGRRRSLPELASNNHNIRASGERMA 776

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642
           R            +Q  + D++   M          K    ++LTVHDE++ E P+    
Sbjct: 777 R---------NTPIQGTAADVIKLAMVRVWRRLRDEKMESRLILTVHDELIVEAPEAEAA 827

Query: 643 SVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
               +    M    ++A  +PL  E ++ K +
Sbjct: 828 KAAAILQEEMEGCVNYA--VPLSTEVHQGKNW 857


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 95/693 (13%), Positives = 197/693 (28%), Gaps = 147/693 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57
           L ID E  +     K  +  Y + A I         + +D+ +          +  ++  
Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDLYF-PLNHGGLLAKNIDK 396

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112
              + ++ +  +  +++N           LGI      ++   +        + +     
Sbjct: 397 NLVVNFISELDIKFISYNFK----SLLN-LGIKFK-SMYMDMMIAYHLISSQTKIDPIIP 450

Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       K   GK  I      + D   Y    +  + A      Y  +  +  +
Sbjct: 451 ITEYSTLEPKDFKTAFGK--INVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYK 508

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L        + E  L  +   +  +G  ID+         + +E  ++++ I +     
Sbjct: 509 ILM-------ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287
             +      L   LF+   +     ++    T   +L            L+L+    +  
Sbjct: 562 F-NINSPKQLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  T    G + TGR S      QN+P                
Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIP---------------- 663

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   +A  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 664 --------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 IYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           ++  T  + FN    + VS+EQR I                                   
Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIA---------------------------------- 741

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                     +  +  +         A + K+         K +  ++  V    +++ E
Sbjct: 742 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIE 791

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+   S +        T  SQ
Sbjct: 792 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 822

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641
             R           ++Q  + ++L + M         K    ++L VHDE++ E  +   
Sbjct: 823 AERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSV 876

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   +M       + + L       K +
Sbjct: 877 EKYSEILADIMKNTVQL-EDVKLNININIGKNW 908


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/645 (15%), Positives = 171/645 (26%), Gaps = 127/645 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A    D    + D  + +      L  +L DE    + H +     +F    G     +
Sbjct: 403 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 459

Query: 92  RW-ICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                T++ A                  +    L     G   +     G       +  
Sbjct: 460 GIEHDTAIAAYLLRPGQRTYELADVYQRHLQRQLNPSNNGSNQLTLLDAGDSQVLVDEAV 519

Query: 149 RANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   +L GE   +  E    EL++ L      E  L  +   +   G  +D+  + 
Sbjct: 520 A-----ILELAGELTSQLQEINGFELYRDL------EIPLLSILARMEATGIAVDVATLE 568

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLK 262
           +  E    +  + +E   +L      +      L+  LF   G+     ++        +
Sbjct: 569 EQLETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAE 628

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
                +       D +L            L  L  +V SDGR+  T     AS TGR S 
Sbjct: 629 IEALAAKNPHPFLDHLLAHRQYQKMKTT-LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSS 686

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P                            A   +RS  +   G   L+ AD 
Sbjct: 687 TDPNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADY 722

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RV+A ++ +   I+A+  GED++    +K F+ PID V+ E R   K M   L Y
Sbjct: 723 SQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 782

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L +          S FE +   + +   + +Q  +    + L G 
Sbjct: 783 G-----LSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRYLAEVVEQARKSGYTETLFGR 837

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                    R     +    +   E                                   
Sbjct: 838 ---------RRYLPELNSDNRVARENAERAALNAPIQGTAADII---------------- 872

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                ++    V  +       +                             +       
Sbjct: 873 -----KVAMIRVDRELRATGVKSRV---------------------------LLQVHD-- 898

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                    E+V E        V  +    M    +    +PL+ 
Sbjct: 899 ---------ELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEV 932


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/639 (13%), Positives = 165/639 (25%), Gaps = 143/639 (22%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D   +      L ++L +       H+S       +   G+ +       TS+ A     
Sbjct: 348 DVAPKDE--KALAEWLANPQATKWLHDSKKAYHTLQNQ-GLTLDGVE-HDTSLAAYLLRP 403

Query: 106 ---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                SL +                G  L              +  +A   +        
Sbjct: 404 DVRTLSLADVVQRH----------VGHELSEGATGPERAQAVAELVKALTPEIEAAGQAE 453

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              D+E    L                +   +   G  +D   + +L +       +   
Sbjct: 454 LYFDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARLNEEIA 497

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG------TLKSILSHSNITQLAKD 276
              +L      +      L+  LF    +     ++            L+  +       
Sbjct: 498 AARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGH 557

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           L+ +R      +   ++ L EAV  DGR+  T    GA  TGR S      QN+P     
Sbjct: 558 LMAHREYQKMKST--IDGLIEAVGDDGRIHTTFNQKGA-ATGRLSSSDPNLQNIP----- 609

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395
                                  A   +R+      G   L+ AD + IE RV+A ++ +
Sbjct: 610 -------------------VRTDAGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSED 650

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              I+A+A+GED++    ++ F+ P+D+V+ E R   K +   L Y              
Sbjct: 651 AGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYG-----LSAFGLSQ 705

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L +  +       + FE +   + +   + +   E    + L G          R    
Sbjct: 706 QLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGR---------RRYLP 756

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +    +   E                                        +L    V  
Sbjct: 757 ELNSSNRVARENAERAALNAPIQGTAADII---------------------KLAMLRVDR 795

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
           + +    A+                             +               DE+V E
Sbjct: 796 EITRQQLASRV---------------------------LLQVH-----------DELVVE 817

Query: 636 TPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                   +  L    M         +PL         +
Sbjct: 818 VAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDNW 854


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 173/633 (27%), Gaps = 148/633 (23%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L D+++  + ++      L K                ++        S KN   
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                  + K    + +I    K  I+           ++  + F  Y   D        
Sbjct: 432 E------VLKEPWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNID-------- 477

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
                       +  +   +   G  +D + + +L      E  KL+E+I  L+     +
Sbjct: 478 ----------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-N 526

Query: 235 SRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSA 288
                 L   LF    +          S  T   IL   +       DL+L     +   
Sbjct: 527 IGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLK 586

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               ++L + + +      T     ++ TGR S      QN+P                 
Sbjct: 587 NTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQNVP----------------- 629

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                        + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI
Sbjct: 630 -------IRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDI 682

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T  + FN    +++ E R   K +                    G+           
Sbjct: 683 HTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---------- 718

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   A +  +         K + A+++GV +  +      
Sbjct: 719 --------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQKYMEQTKAFA 758

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
           +                                    R+     +               
Sbjct: 759 SSNGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAE 787

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642
           R            +Q  + DI+   M N        K    +VL +HDE++ E P     
Sbjct: 788 RAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVE 841

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +  +M  + + A  +P+  E      + 
Sbjct: 842 IITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/635 (13%), Positives = 178/635 (28%), Gaps = 149/635 (23%)

Query: 50  QSAMPSDLLQYLRDETVMCVA--HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
              + +   + L    V  +   H +L+         G+ +   ++   S+ A       
Sbjct: 401 DKNVLAKWHELLGSPRVFKIMADHKTLY--SALAN-EGVRLDGLKY-DLSLAAYLMNPTR 456

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S   A   L+                 F   + ++        N  +  +  G       
Sbjct: 457 SSYQAAELLSGQAD-----------ELFFSAAREAGLLAHEFENSRKKLEELGLSSLL-- 503

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                         + E  L ++   +  +G  +D +++ ++   + ++   ++EDI ++
Sbjct: 504 -------------HELEEPLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQI 550

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
             G+  +      L   LF    +     +     T    L          + IL     
Sbjct: 551 A-GVSFNINSPQQLGKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEKILEFRHL 609

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  +  L   +  DG++  T Q    + TGR S      QN+P             
Sbjct: 610 VKLNSTYVKGLLGQL-RDGKVHTTFQQMV-TATGRLSSTEPNLQNIP------------- 654

Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              +R   +    G +L  AD + IE RVLA  + +    ++F 
Sbjct: 655 -----------IRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQ 703

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            GED++  T ++ F  P+++V+ + R   K +                    GL      
Sbjct: 704 TGEDVHARTASEVFGVPLEQVTPDMRRKAKAVNF--------------GLMYGLTDF--- 746

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                        A   ++     +   + +  ++ GV +   D
Sbjct: 747 ---------------------------GLARDIRIPRKEAKFYIERYFQRYSGVKKYLND 779

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                    +    ++  R                                 + ++ N  
Sbjct: 780 SVVNAMETGETRTLLNRLRQT------------------------------PELNHQNRT 809

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT 639
             Q  +          + +Q  + DI+   M    +       +++L VHDE++ E    
Sbjct: 810 VRQFGQ-----RIAMNSPIQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSAR 864

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M         +PL+ +      +
Sbjct: 865 ALPEVAQIVKTEMESA--LLLTVPLQVDCKTGVNW 897


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/662 (13%), Positives = 188/662 (28%), Gaps = 141/662 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85
                + +++ +          +  ++     + ++ +  +  +++N           LG
Sbjct: 369 LGIIISTEEKDLYF-PLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           I+     ++   +        + +                 K   GK  I      + D 
Sbjct: 423 INFK-SMYMDMMIAYHLISSQTKIDPIIPIVEYSKLEPKDFKTAFGK--INVELITAQDF 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y    +  + A      Y  +  +  + L        + E  L  +   +  +G  ID
Sbjct: 480 SKYLSAISIGILAIYDELNYLLKKEDLYKILM-------ENEMPLIPVLSLMERKGIEID 532

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +         + +E  K+++ I +       +      L   LF+   +     ++    
Sbjct: 533 VQYFKNYSLELDKELLKIEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 591

Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L            L+L+    +      ++TL   V  + R+  T    G + TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TATG 650

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   +A  GK L+ 
Sbjct: 651 RLSSSDPNLQNIP------------------------VKTDDGIKIREGFVAGAGKVLMS 686

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437
            D + +E RVL  ++ ++  I+A+   +D++  T  + FN    + VS+EQR I      
Sbjct: 687 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIA----- 741

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                  +  +  +         A + K
Sbjct: 742 ---------------------------------------KIINFSIIYGKTPFGLAKELK 762

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         K +  ++  V    +++ E                               
Sbjct: 763 IPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLF------------------- 803

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R+   S +        T  SQ  R           ++Q  + ++L + M   
Sbjct: 804 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 847

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671
                 K    ++L VHDE++ E  ++       +   +M       + + L       K
Sbjct: 848 YDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNININIGK 906

Query: 672 RY 673
            +
Sbjct: 907 NW 908


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 178/656 (27%), Gaps = 172/656 (26%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK------TLGIDIPSK 91
           D +       +++ A+   +  + RDE          F++    +       LGI     
Sbjct: 363 DGDQAIFHPFSDEEAVFKKMSAW-RDEGKAVWC----FDQTRLYRECPRFFALGIPF--- 414

Query: 92  RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                ++ A           L+N       +E                            
Sbjct: 415 -VFDATIAAYLLDPGHRDYLLENLAARYFLTEIS-------------------------- 447

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             +  +  +        D          L  +   E  L  +   +   G RID   +  
Sbjct: 448 --DRPRLVRNILSRLWDDAVKE----GLLELVQSIEIPLGRILYQMEVLGVRIDRQALES 501

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
            +E I    ++L+E+I +L             +   L+   G+           T +  L
Sbjct: 502 ARESIEALSRELEEEIYRLAGSRFTIL-SPKQVGEILYGKLGLPTARKGKTGYSTDEETL 560

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +  +      + IL            ++ ++  + + GRL G       + TGR S    
Sbjct: 561 TRLSALHPLPEKILAYRQMKKLLSTYVDPIARGIDAQGRLHGQFNQTV-TATGRLSSSNP 619

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                            A   +R C IA   + L+ AD + IE
Sbjct: 620 NLQNIP------------------------MRSPAGREIRKCFIAGENRVLLSADYSQIE 655

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA  + +   +  F   EDI+  T    F    D V+ E R   K +          
Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFG---DPVTPETRRKAKTIN--------- 703

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   +    +     + 
Sbjct: 704 -----FGILYGMS------------------------------AFSLSQDLGVESQEAQA 728

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               +      V  L+  + E      +    +                           
Sbjct: 729 FIDRYFGAFPKVGPLFDSILEEAKKTGEVRTIL--------------------------G 762

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGK-LTENIVQAISRDILCEGMKN---ATK-- 619
           R+    ++               R R YG +     ++Q  + D++ + M +     K  
Sbjct: 763 RKRRIPELFASDR----------RSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812

Query: 620 -NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               D+++ VHDE++ E  +        T+ SLM         +PL  +  + K +
Sbjct: 813 PEIGDLLVQVHDELLFEVREDNLDEASGTIRSLMEGA--LRLKVPLVVQVGQGKNW 866


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 98/645 (15%), Positives = 171/645 (26%), Gaps = 127/645 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A    D    + D  + +      L  +L DE    + H +     +F    G     +
Sbjct: 362 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 418

Query: 92  RW-ICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                T++ A                  +    L     G   +     G       +  
Sbjct: 419 GIEHDTAIAAYLLRPGQRTYELADVYQRHLQRQLNPSNNGSNQLTLLDAGDSQVLVDEAV 478

Query: 149 RANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   +L GE   +  E    EL++ L      E  L  +   +   G  +D+  + 
Sbjct: 479 A-----ILELAGELTSQLQEINGFELYRDL------EIPLLSILARMEATGIAVDVATLE 527

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLK 262
           +  E    +  + +E   +L      +      L+  LF   G+     ++        +
Sbjct: 528 EQLETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAE 587

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
                +       D +L            L  L  +V SDGR+  T     AS TGR S 
Sbjct: 588 IEALAAKNPHPFLDHLLAHRQYQKMKTT-LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSS 645

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381
                QN+P                            A   +RS  +   G   L+ AD 
Sbjct: 646 TDPNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADY 681

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RV+A ++ +   I+A+  GED++    +K F+ PID V+ E R   K M   L Y
Sbjct: 682 SQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 741

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L +          S FE +   + +   + +Q  +    + L G 
Sbjct: 742 G-----LSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRYLAEVVEQARKSGYTETLFGR 796

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                    R     +    +   E                                   
Sbjct: 797 ---------RRYLPELNSDNRVARENAERAALNAPIQGTAADII---------------- 831

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                ++    V  +       +                             +       
Sbjct: 832 -----KVAMIRVDRELRATGVKSRV---------------------------LLQVHD-- 857

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                    E+V E        V  +    M    +    +PL+ 
Sbjct: 858 ---------ELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEV 891


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 90/638 (14%), Positives = 172/638 (26%), Gaps = 151/638 (23%)

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LA 115
           +L D     + H++     +F +  G+ +       T++ A          +L       
Sbjct: 403 WLGDPERPKIMHDAKGLMRVFGEH-GMSVAGVSM-DTALGAYLVKPGRRTFALGALSLEY 460

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L                      + +S       A+     +      +  ++    L  
Sbjct: 461 LGRE----------------LVPAQESDGQLAFGADDESQARTLMVEARTILDLGTALTA 504

Query: 176 RLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           RL  +      +D E     L   +   G + D   + +++   A   ++   +      
Sbjct: 505 RLPEVGAEGLLTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVG 564

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLA 283
               +      L+  LF    +     ++    T    L+        +L   ++ +R  
Sbjct: 565 HEF-NLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQ 623

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +   +   +  L ++++ DGR+  T     A  TGR S      QN+P            
Sbjct: 624 AKLRST--VEGLIKSIAPDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP------------ 668

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAF 402
                               +R   +   G + L+ AD + IE RV+A ++ ++  I AF
Sbjct: 669 ------------VRTDEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAF 716

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +GED++ T     F      V  E R   K M              +     GL     
Sbjct: 717 TSGEDLHRTVAGYVFGVEPAAVDAEMRRKIKAM--------------SYGLAYGLS---- 758

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         + +  +       +   +  +  GV     
Sbjct: 759 --------------------------AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLH 792

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            + E           +                           RR    D+  D      
Sbjct: 793 RVVEEARATGYTATML--------------------------GRRRYLPDLNSDNRQRRE 826

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVLTVHDEIVSET 636
           A  ++              +Q  + DI+   M N  +          ++L VHDEIV E 
Sbjct: 827 AAERM---------ALNAPIQGTAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLEL 877

Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  V  +    M          PL       + +
Sbjct: 878 APGERAPVEEILRREMAAAAELRA--PLTVSVGVGRDW 913


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 93/630 (14%), Positives = 173/630 (27%), Gaps = 128/630 (20%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L  +L DE+     H++    +      G+++       T++ A                
Sbjct: 382 LRAWLGDESRPKAVHDAKGPMLAL-WAQGMELRGLTC-DTALAAYLAMP----------- 428

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                L +      L       +                 +  G       E    L   
Sbjct: 429 GQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALAVRELADALEAF 488

Query: 177 LIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           L P      + + E  L  +   +   G   D D    L+       K+  E       G
Sbjct: 489 LEPRGGTHLMREVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAHAAV-G 547

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASS 285
              +      L+  LF+   +     ++    +                  ++L     +
Sbjct: 548 EQFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLRHRDQA 607

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +  +  L + ++ DGR+  T     A  TGR S      QN+P              
Sbjct: 608 KLKVT-VEGLVKEIADDGRIHTTFNQIVA-ATGRLSSEKPNLQNIP-------------- 651

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                        +    +R   +   G   L+ AD + IE R++A ++G++  I AF +
Sbjct: 652 ----------IRTVEGRRIRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFES 701

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D + TT A+ F+   ++V+ E RA  K M   L Y               L++     
Sbjct: 702 GHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYG-----LSDFGLAGQLNIPVQEA 756

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                  FE++         +  Q  +    + ++G          R     +    +  
Sbjct: 757 KALKEEYFEEFGGVRDFLNAIVAQARQDGYTETIMGR---------RRYLPDLNSDNRQR 807

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E    +                                                LN   
Sbjct: 808 REMAERM-----------------------------------------------ALNAPI 820

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                      K+    VQ  +   + E        G  ++L VHDE+V E       ++
Sbjct: 821 QG---SAADIIKVAMLNVQ-SA---VKEA-----ALGSRMLLQVHDELVFEVAPGELETL 868

Query: 645 GTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             L    M     ++  +PL+      + +
Sbjct: 869 RELVTDRMNAA--YSLRVPLEVSVGVGRTW 896


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 84/499 (16%), Positives = 154/499 (30%), Gaps = 120/499 (24%)

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +  RG RID         ++  E  +L   I +       + R +  L   L
Sbjct: 467 PLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQAGEEF-NIRSSQQLAEVL 525

Query: 246 FLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           F   G+     +      T  S+L            +L            L  + +    
Sbjct: 526 FSRLGLACKQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMYEKLRSTYLEPMPQLADK 585

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           +GR+  T     A+ TGR S      QN+P                          G   
Sbjct: 586 NGRIHTTFNQL-ATATGRLSSSNPNLQNIP------------------------IRGALG 620

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +RSC +AS G +LV AD + IE RVLA ++G+    +AFA G+DI+  T    F+T  
Sbjct: 621 PRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILFDTT- 679

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            +VS ++R   K +                    G+                        
Sbjct: 680 -EVSADERRKAKTINF--------------GLLYGMGP---------------------- 702

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                    +   +  +     +     + +K   V + ++++  G   +          
Sbjct: 703 --------QKLGRELGISLKEAKEFIAVYFSKLSRVREFYEEIEAGAKSLGYVTTL---- 750

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                 + RR +  ++    + +     ++             +
Sbjct: 751 ----------------------AGRRRMLPEINSRNTNMAQQARRM---------AINTV 779

Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           VQ  + DI+ + M    K       G  ++L +HDE++ E P      V   +  +M   
Sbjct: 780 VQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAGIMASV 839

Query: 655 PSWAKGLPLKAEGYEAKRY 673
             ++  +PL  +      +
Sbjct: 840 --YSLSVPLVVDWGVGDDW 856


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 188/643 (29%), Gaps = 144/643 (22%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---- 112
           L ++L       V H    +  +   +LG+D+  + W  T +            +     
Sbjct: 417 LQRFLDGHADRIVVHGYKEQSHILA-SLGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 474

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L              L         D          H+   +   +     ++  RE
Sbjct: 475 SHFLQLQLDNADDVAQGQLDLSGDVDPADQ----RKDLLHMAMVRALADMLAAKID-ERE 529

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            F+ L  +   E  +  +   +   G  +D   + ++++  A + +   ++      G  
Sbjct: 530 QFRLLQSI---ELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDA-QETAWQFAGSR 585

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ--------LAKDLILN 280
            + +    L+  LF   G+     ++     T  S L    +              L+ +
Sbjct: 586 VNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRH 645

Query: 281 RLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           R  +    I  + +L +AV+ D GR+  T +   A  TGR S      QN+P        
Sbjct: 646 RETNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP-------- 694

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398
                                   +RS  +   G + L+ +D + +E R++A ++G+D  
Sbjct: 695 ----------------NRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 738

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G D +    +  +  P+D ++ +QR   K M   L Y        T        
Sbjct: 739 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY-----GLSTYGL----- 788

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A + K+     + +K  + A    V 
Sbjct: 789 ----------------------------------AQQLKISPGEADRLKSQYFATFGKVH 814

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +  + L  G                                      RR  +  ++    
Sbjct: 815 EYLESLVAGAREKGYTETMF--------------------------GRRRYFPGLQSPNR 848

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEI 632
            +  A  +               +Q  + DI+   M        K      I+L +HDE+
Sbjct: 849 NIRDAAERG---------ALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDEL 899

Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
           V E        V  L    M      A  +PL         ++
Sbjct: 900 VVEIAPGEVEQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 940


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/632 (13%), Positives = 154/632 (24%), Gaps = 147/632 (23%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106
             A P  L   +       +AH    +    +     ++P+     T + A         
Sbjct: 388 GDAGPEVLAAAI--GERPALAH----DAKALR-----EVPATLAHDTLIAAYLLEPARRS 436

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             L            +                           A    A  +      + 
Sbjct: 437 YPLDELTEERGIGTDV-------------------------EDAAAADAILVHALTAAQR 471

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +        L    D E  L  + + +   G R+D +L+  ++  +  E   L+ +I +
Sbjct: 472 PQLEERELLPLFD--DVELPLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWE 529

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLA 283
           LT            L   LF   G+           T   +L          + I     
Sbjct: 530 LTGEEFM-IGSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIERWRE 588

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +  A   L+ L   +S  D RL  T     A  TGR S      QN+P           
Sbjct: 589 LTKLASTYLDALPLLISPEDHRLHTTFNQVTA-ATGRLSSTNPNLQNIP----------- 636

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R+C +A  G  L+ AD + +E RVLA IAGE+   + F
Sbjct: 637 -------------IRTPLGREIRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIF 683

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GED++  T A       +++    R+  K++   + Y               L + + 
Sbjct: 684 RRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVYG-----LSAFGLADRLQIPRE 738

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                     + +   ++      +Q  +      L+G          R +   +     
Sbjct: 739 EAQEFIDRYLDGFPAVQAFIRTTIEQATDQGYVTTLMGR---------RRQIPELRARNY 789

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            + +    +                                   +L   +          
Sbjct: 790 QMRQLGERLAVNTVIQGTAADVI---------------------KLAMVNADRALHASGL 828

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            T  +                                            ++ E P     
Sbjct: 829 RTRLI---------------------------LQIHDE-----------LLFEGPAEEAE 850

Query: 643 SVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
               L    M          PL  +      +
Sbjct: 851 QARDLVVPQMVDALELDP--PLVVDAGIGPNW 880


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/670 (14%), Positives = 188/670 (28%), Gaps = 161/670 (24%)

Query: 39  DEPVKLWDRT-----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           D    + D       ++ A+   L   L       + H++   R     + G  +    +
Sbjct: 343 DNEALVIDPVELSPQQEEALGEVLATALS-----LIVHDAKGARHALS-SRGWTLGGVEF 396

Query: 94  ICTSVLARTNGL---PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPY 145
             T + A           L++     L     + + EEG +               +   
Sbjct: 397 -DTMLAAYLAHPDQRSHKLEDVLSRVLGV---VIEEEEGDSEALFDLGDMGAGPSAAQVR 452

Query: 146 DCTRANHVQAWQ-LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               A H+           +   EA          L+D E  L +L   + D G   D  
Sbjct: 453 AGKLAAHLHPLASTLRSRLEESSEAAL--------LTDMEMPLSVLLGQMEDIGIAADTS 504

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---L 261
           ++  L + + +      E         + +      L+  LF   G+     ++      
Sbjct: 505 VLDGLSDELGKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTN 563

Query: 262 KSILSHSN---------ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              L+  +                L+ +R          +++LS  V+SDGR+  T    
Sbjct: 564 AEALADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ- 620

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            A+ TGR +      QN+P                                +R   +A  
Sbjct: 621 VAAATGRLASSDPNLQNIP------------------------ARSADGMRIRGAFVAGE 656

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           G + L+ AD + IE R++A ++G++  I+AF +GED++ T  +  F TP+ +VS E+R+ 
Sbjct: 657 GFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSR 716

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K     L Y        +      L                                  
Sbjct: 717 IKATSYGLAYG-----LSSYGLAAQL---------------------------------- 737

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 +       ++  +  +   V    + L                           
Sbjct: 738 -----GIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMF------------- 779

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                         RR    D++           +               +Q  + DI+ 
Sbjct: 780 -------------GRRRYLPDLRSSNRQRREMAERA---------ALNAPIQGSAADIVK 817

Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664
             M N             +++ +HDE++ E       +V  +    M         +PL 
Sbjct: 818 IAMINVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDKMATPVE--LSVPLD 875

Query: 665 AEGYEAKRYR 674
                 + ++
Sbjct: 876 VAVGVGRSWQ 885


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/654 (14%), Positives = 178/654 (27%), Gaps = 137/654 (20%)

Query: 10   TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67
            T     +   G+  +     I L   A ++ PV ++D     + ++ + L + L++E V+
Sbjct: 1310 THCGLDIETTGLEVF--DEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367

Query: 68   CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
             +  N  F+          +        T + ++      ++         +  + K   
Sbjct: 1368 KIIQNGKFDAKFLMHN---NFQVDNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLN 1420

Query: 128  GK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                   +    +      +        +  L   Y K   E  +E    +  ++D E  
Sbjct: 1421 VTLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKEN---METVNDIENK 1477

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
              L    +   G  +DL+ + K    I  E       +         +      +   L 
Sbjct: 1478 CILPICDMELNGITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQVLKALQ 1537

Query: 247  LITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304
                 D+   + E T  S L +    +    L   R             L + ++    +
Sbjct: 1538 NNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRR-LYKLYSAFYLKLPQHINKKTNK 1596

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            +  T      + +GR+S      Q +PRQ                              +
Sbjct: 1597 IHTTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNI 1627

Query: 365  RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
            R   I       ++AD   IE ++ A I  +D  +KA+ N  D++  T +     PI  V
Sbjct: 1628 REIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPIADV 1687

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
            +KE R I K +   L Y       K  A+                               
Sbjct: 1688 NKEDRHIAKAINFGLIYGMNYVNLKNYANTY----------------------------- 1718

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                         +    C     ++   ++G+ +    +      +     S  + R  
Sbjct: 1719 ---------YNLNMNLDQCLYFYNSFFEHYKGIYRWHNQI----KQIRGLEYSTLSNRKV 1765

Query: 545  NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
              P                                                K     VQ 
Sbjct: 1766 IFPYFSFT-------------------------------------------KALNYPVQG 1782

Query: 605  ISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTK 653
               DIL   +    KN       I+L VHDEI+ E        ++  L   M  
Sbjct: 1783 TCADILKLSLVELYKNLKPIHGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1836


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/693 (16%), Positives = 205/693 (29%), Gaps = 179/693 (25%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           M      F D ET S                 I L A++     V        +++   L
Sbjct: 1   MKNNEVFFFDTETDSLD----------FRTGKIKLIAFSKGLNEVVT-----TTSVDERL 45

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL 116
              L D+ ++ V HN+ F+   F ++ G  +    + CT ++A+  G    SLK      
Sbjct: 46  KSILNDKNIIKVFHNAKFDVGFF-QSKGYRVN--NYHCTLLMAQVLGEEKLSLKALAK-- 100

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                                    S  +           Q   +Y  +DVE TR L+ +
Sbjct: 101 ----------------KYLDVDMDKSMQHSDNWQETEIT-QEHIDYAVKDVEHTRALYYK 143

Query: 177 LIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           L+ L          + ER        +   G  ++ D      +   +   +L+  I  L
Sbjct: 144 LLDLLVENNLLTVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKDL 203

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
            +    +      L   +    GI L   S      +  +S+  ++ K +   R   +  
Sbjct: 204 LNRKELNLNSPKQLVEAIVE-YGIKLHSTS---DDELAKYSDEHEVIKLIRKYRRLQAKI 259

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                  L + + +DGR+R   +  G SR+GR S      Q +P                
Sbjct: 260 KT-YGEKLKKFIDNDGRIRAHWRLIG-SRSGRMSCNNPPLQAMPGNS------------- 304

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            R   +A  G KL+ +D + IE RVLA I+ ++  I  F NG D
Sbjct: 305 -----------------REFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGID 347

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +++ T +  F  PID++SKE+R + K +   + Y               L          
Sbjct: 348 LHLGTASLIFKKPIDEISKEERQVAKSLNFGIVYG-----ITAYGIQKNLRKSGVDT--- 399

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                               E  +  +   +  V +L   L + 
Sbjct: 400 -------------------------------SLEEAEKYRIEFLNVYPKVKELQDSLLKA 428

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                          +I     RR                    
Sbjct: 429 ------------------------------DYIKTLGGRR-------------------W 439

Query: 588 MRERTYGGKLTENIVQAISRDILCEGM-KNATKNG--YDIVLTVHDEIVSETPDTPYFSV 644
                   +     +Q  + + L E +     +    + +V  +HDEI+ E P+      
Sbjct: 440 QGGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEVPEDEAEEA 499

Query: 645 GTLCS-LMTKNPS-WAKGLPLKAEGYEAKRYRK 675
             +    M +      K +P+  +   +  + K
Sbjct: 500 KNILESCMVEGMKTIVKDIPIIVDSSVSNNWCK 532


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/693 (13%), Positives = 199/693 (28%), Gaps = 147/693 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57
           L ID E  +     K  +  Y + A I         + +D+    +       +  ++  
Sbjct: 339 LIIDNE--NSLNEQKEYLTNYKKIASIYYEGLGIILSTEDKD-FYFPLNHGGLLAKNIDR 395

Query: 58  ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112
              ++++ +  +  +++N           LGI      ++   +        + +     
Sbjct: 396 NLVVKFISELDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPIIP 449

Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                       K   GK                D ++     +  +   Y + +    +
Sbjct: 450 ITEYSKLEPKDFKTAFGK-------VNVELITAQDFSKYLSDISIGILAIYDELNYLLKK 502

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E   ++  L + E  L  +   +  +G  ID+         + +E  K+++ I +     
Sbjct: 503 EDLYKI--LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEE 560

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287
             +      L   LF+   +     ++    T   +L            L+L+    +  
Sbjct: 561 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 619

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               ++TL   V  + R+  +    G + TGR S      QN+P                
Sbjct: 620 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIP---------------- 662

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R   IA  GK L+  D + +E RVL  ++ ++  I+A+   +D
Sbjct: 663 --------VKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 714

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           ++  T  + FN P  + VS+EQR I                                   
Sbjct: 715 LHDLTARRIFNLPDSETVSREQRTIA---------------------------------- 740

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                     +  +  +         A + K+         K +  ++  V    K++ E
Sbjct: 741 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIE 790

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                                  R+   S +        T  SQ
Sbjct: 791 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 821

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641
             R           ++Q  + ++L + M         K    ++L VHDE++ E      
Sbjct: 822 AERMA------VNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIFEVEKNSV 875

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
                +   +M       + + L       K +
Sbjct: 876 EKYSGILADIMKNTVQL-EDVKLNININIGKNW 907


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/662 (13%), Positives = 187/662 (28%), Gaps = 141/662 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85
                + +++ +          +  ++     + ++ +  +  +++N           LG
Sbjct: 369 LGIIISTEEKDLYF-PLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           I+     ++   +        + +                 K   GK  I      + D 
Sbjct: 423 INFK-SMYMDMMIAYHLISSQTKIDPIIPIVEYSKLEPKDFKTAFGK--INVELITAQDF 479

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             Y    +  + A      Y  +  +  + L          E  L  +   +  +G  ID
Sbjct: 480 SKYLSAISIGILAIYDELNYLLKKEDLYKILM-------KNEMPLIPVLSLMERKGIEID 532

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +         + +E  K+++ I +       +      L   LF+   +     ++    
Sbjct: 533 VQYFKNYSLELDKELLKIEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 591

Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L            L+L+    +      ++TL   V  + R+  T    G + TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TATG 650

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   +A  GK L+ 
Sbjct: 651 RLSSSDPNLQNIP------------------------VKTDDGIKIREGFVAGAGKVLMS 686

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437
            D + +E RVL  ++ ++  I+A+   +D++  T  + FN    + VS+EQR I      
Sbjct: 687 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIA----- 741

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                  +  +  +         A + K
Sbjct: 742 ---------------------------------------KIINFSIIYGKTPFGLAKELK 762

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         K +  ++  V    +++ E                               
Sbjct: 763 IPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLF------------------- 803

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R+   S +        T  SQ  R           ++Q  + ++L + M   
Sbjct: 804 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 847

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671
                 K    ++L VHDE++ E  ++       +   +M       + + L       K
Sbjct: 848 YDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNININIGK 906

Query: 672 RY 673
            +
Sbjct: 907 NW 908


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 188/643 (29%), Gaps = 144/643 (22%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---- 112
           L ++L       V H    +  +   +LG+D+  + W  T +            +     
Sbjct: 416 LQRFLDGHADRIVVHGYKEQSHILA-SLGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 473

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              L              L         D          H+   +   +     ++  RE
Sbjct: 474 SHFLQLQLDNADDVAQGQLDLSGDVDPADQ----RKDLLHMAMVRALADMLAAKID-ERE 528

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
            F+ L  +   E  +  +   +   G  +D   + ++++  A + +   ++      G  
Sbjct: 529 QFRLLQSI---ELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDA-QETAWQFAGSR 584

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ--------LAKDLILN 280
            + +    L+  LF   G+     ++     T  S L    +              L+ +
Sbjct: 585 VNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRH 644

Query: 281 RLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
           R  +    I  + +L +AV+ D GR+  T +   A  TGR S      QN+P        
Sbjct: 645 RETNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP-------- 693

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398
                                   +RS  +   G + L+ +D + +E R++A ++G+D  
Sbjct: 694 ----------------NRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 737

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           I+AF +G D +    +  +  P+D ++ +QR   K M   L Y        T        
Sbjct: 738 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY-----GLSTYGL----- 787

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A + K+     + +K  + A    V 
Sbjct: 788 ----------------------------------AQQLKISPGEADRLKSQYFATFGKVH 813

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           +  + L  G                                      RR  +  ++    
Sbjct: 814 EYLESLVAGAREKGYTETMF--------------------------GRRRYFPGLQSPNR 847

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEI 632
            +  A  +               +Q  + DI+   M        K      I+L +HDE+
Sbjct: 848 NIRDAAERG---------ALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDEL 898

Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
           V E        V  L    M      A  +PL         ++
Sbjct: 899 VVEIAPGEAEQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 939


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/653 (13%), Positives = 166/653 (25%), Gaps = 126/653 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
            A A  D     +D TE           +L D     V HN+     +  +  G  +   
Sbjct: 364 VALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVLAEH-GWSVAGV 422

Query: 92  RWICTSVLARTNGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
               T++ A           L       L+         +G   +A       ++     
Sbjct: 423 GM-DTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAAADG--QLAFGADEGAEAEVLMV 479

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                +   + F      DV A   L        D E     L   +   G   D + + 
Sbjct: 480 QARAILDLGETFESRLA-DVGAADLLR-------DMELPTSALLARMERHGIAADREHLQ 531

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            ++++ A   ++  ++          +      L+  LF    +     ++    +    
Sbjct: 532 AMEQMFAGAVQQAVKEAHAAAGREF-NLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADA 590

Query: 268 SNI-----TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
                         ++L     +   +  +  L + +++DGR+  T     A  TGR S 
Sbjct: 591 LAWLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSS 648

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADL 381
                QN+P                                +R   +   G + L+ AD 
Sbjct: 649 TDPNLQNIP------------------------VRTDEGRAIRRGFVVGEGFESLMTADY 684

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE RV+A ++ +    +AF +GED++ T  A+ F+     V  E R   K M   L Y
Sbjct: 685 SQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAY 744

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          L+++         + FE +     +   + D+         L G 
Sbjct: 745 G-----LSAFGLSQQLNIEAAEARGLMDAYFERFGGVRDYLRRVVDEARATGYTATLFGR 799

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                    R     +    +   E    +                              
Sbjct: 800 ---------RRYLPDLNSDNRQRREAAERMALNAPIQGTAADIV---------------- 834

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
                           + LN   +                      D+    +       
Sbjct: 835 --------------KIAMLNVDKALRE------------------ADLKSRMLLQVHD-- 860

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                    EIV E       +   L    M         +PL         +
Sbjct: 861 ---------EIVLEIAPGERAAAEELVRREMANAVQ--LRVPLGVSVGAGPDW 902


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/632 (14%), Positives = 178/632 (28%), Gaps = 146/632 (23%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNA 112
           +  + L  +    +A NS     +F+     +  + ++   +++A          +    
Sbjct: 354 EFKKQLL-KAKAIIAENSK---EIFESDFPYE--NLKFYDVTLIAYLLDPTHVTYNRSYV 407

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                                                  ++ A  L   Y        + 
Sbjct: 408 GELFKVPSIYIDENASFEQNG------------------NMIADFLLALYTSSYELLVKN 449

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
             ++L    + E+ L  +   +   G  ID +   K+++ + ++ +KL  +I +      
Sbjct: 450 DIEKLFK--EVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEKEEKLLLEIYREAGEEF 507

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      L   LF   G+     ++    T   +L    I       IL     +    
Sbjct: 508 -NVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLESLAIDYPFVKNILEYRTLAKLIS 566

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             L+ +   V  + +   T      + TGR S      QN+P                  
Sbjct: 567 TYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIP------------------ 608

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI
Sbjct: 609 ------VRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDI 662

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T ++ F  P ++V+ EQR+  K +   + Y               L           
Sbjct: 663 HRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLSKQL----------- 706

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                        +     +   K +  ++ G+ +  K +TE  
Sbjct: 707 ----------------------------GISRKKADEYIKTYLKRYPGIHEFMKKMTEEA 738

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               +                                R     D+        +   +  
Sbjct: 739 RKTGKVKTLF--------------------------GRYRDLPDINSKNFQRRSFAERT- 771

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642
                        +Q  + DI+   M    +          I+L VHDE+V E       
Sbjct: 772 --------AMNTPIQGSAADIMKIAMIQVYEKMKKGKYKSRILLQVHDELVVEAVKEEVE 823

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +   L   M    S    + L A+ +  K +
Sbjct: 824 EISKLLKETMESVVS--LKVKLVADVHVGKNW 853


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/659 (13%), Positives = 178/659 (27%), Gaps = 147/659 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L + + +      + FE +   +++   +  + 
Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREA 761

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            +    + +            R     +     ++        +      SA  +  V  
Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +              R L   + K                                  
Sbjct: 813 INLD-------------RALTEKNFKS--------------------------------- 826

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                +         IVL        E P+    +V  L    M      A  +PL A+
Sbjct: 827 ---RMLLQVHDE---IVL--------EVPNDELTAVRKLVKETMEAAIELA--VPLVAD 869


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/646 (15%), Positives = 183/646 (28%), Gaps = 128/646 (19%)

Query: 42  VKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
               D T   A   + L  +LRD     V H             G+++       TS+  
Sbjct: 358 AVYLDLTALDADTENALATWLRDPESPKVLHGFKAALKALT-ARGLELEGV-VDDTSISG 415

Query: 101 RTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                      L       LN        + G+  ++     +  +       A      
Sbjct: 416 YLIQPDRRTYELAELAQHHLNVGMPAATAKAGQLELSFDGNDTAAAEALVQAAAVVSALS 475

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           + F    K               LS  E  +  +   +   G  IDLD + +    +A+ 
Sbjct: 476 RFFETELKERRAEEL--------LSTLELPVSRVLADMELAGIGIDLDRMDEQLADLARV 527

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSN 269
             +  E         + +      L+  LF    +      +        +LK++L  + 
Sbjct: 528 IDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTG 586

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
              L   L+ +R A+       + +L ++V+ DGR+  T     A  TGR S      QN
Sbjct: 587 HEFLV-QLMAHREAAKLRQ--MIESLKKSVAEDGRIHTTYAQNVA-ATGRISSNNPNLQN 642

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARV 388
           +P                                VR   + S+G   L+ AD + IE R+
Sbjct: 643 IP------------------------IRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRI 678

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++G+   I+A+ +GED++    +  F+ P D+V+   R+  K M   L Y       
Sbjct: 679 MAHLSGDAGLIQAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYG-----L 733

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            +      L++            F+ +     +   + DQ         + G        
Sbjct: 734 TSFGLSKQLEISVDEARTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGR------- 786

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             R     +    + L E    +        +                          + 
Sbjct: 787 --RRYLPDLTSTDRQLRENAERIALNSPIQGSAADII---------------------KR 823

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
               V  +                          Q +                  ++L V
Sbjct: 824 AMLGVHAELQA-----------------------QGL---------------KSRMLLQV 845

Query: 629 HDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           HDE+V E       +V  L    M         +PL+ +      +
Sbjct: 846 HDELVLEVAPGERAAVEALVTEQMAAAAD--LSVPLEVQIGVGPSW 889


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 188/662 (28%), Gaps = 141/662 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85
                + +D+    +       +  ++     ++++ +  +  +++N           LG
Sbjct: 368 LGIILSTEDKD-FYFPLNHGGLLAKNIDRNLVVKFISELDIKFISYNFK----ALLN-LG 421

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           I      ++   +        + +                 K   GK             
Sbjct: 422 ISFK-SMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGK-------VNVELI 473

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
              D ++     +  +   Y + +    +E   ++  L + E  L  +   +  +G  ID
Sbjct: 474 TAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKI--LMENEMPLIPVLSLMERKGIEID 531

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259
           +         + +E  K+++ I +       +      L   LF+   +     ++    
Sbjct: 532 VQYFKNYSLELEKELLKVEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 590

Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   +L            L+L+    +      ++TL   V  + R+  +    G + TG
Sbjct: 591 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTSFNQIG-TATG 649

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R   IA  GK L+ 
Sbjct: 650 RLSSSEPNLQNIP------------------------VKTDDGIKIREGFIAGEGKVLMS 685

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437
            D + +E RVL  ++ ++  I+A+   +D++  T  + FN P  + VS+EQR I      
Sbjct: 686 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIA----- 740

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                  +  +  +         A + K
Sbjct: 741 ---------------------------------------KIINFSIIYGKTPFGLAKELK 761

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         K +  ++  V    K++ E                               
Sbjct: 762 IPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLF------------------- 802

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R+   S +        T  SQ  R           ++Q  + ++L + M   
Sbjct: 803 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 846

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671
                 K    ++L VHDE++ E           +   +M       + + L       K
Sbjct: 847 YDILKDKEDIALLLQVHDELIFEVEKNSVEKYSGILADIMKNTVQL-EDVKLNININIGK 905

Query: 672 RY 673
            +
Sbjct: 906 NW 907


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 178/664 (26%), Gaps = 151/664 (22%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                   +   L D+++  + ++      L K                ++        S
Sbjct: 369 NNDWFSDIIFNLLTDKSIRKITYSLK---PLLKFYAEQSHEITAIEDLELMQYALSAGLS 425

Query: 109 LKNACL-ALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-------- 149
            KN    AL           + E      E  A  A        S               
Sbjct: 426 QKNLFEEALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDASTGSTSKLPLETKFGK 485

Query: 150 ------ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                  +     +    Y +  +E       RL    D    +  +   +   G ++D 
Sbjct: 486 MSNVINESARIVAEFTSLYKQNILELKDNKAFRLYSNID--LPICFILDKMEKIGIKVDA 543

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSE 258
           + + +L      E  KL+E+I  L+     +      L   LF    +          S 
Sbjct: 544 NYLNQLSAEFGAEILKLEEEIFALSGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSY 602

Query: 259 GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T   IL   +       DL+L     +       ++L + + +      T     ++ T
Sbjct: 603 STGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTT 662

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                              + +R   IA  G KL+
Sbjct: 663 GRLSSQEPNLQNVP------------------------IRSSEGNKIRQAFIAEEGYKLI 698

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +++ E R   K +  
Sbjct: 699 SADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN- 757

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+                                   A +  
Sbjct: 758 -------------FGIIYGIS------------------------------AFGLAKQLN 774

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +         K + A+++GV +  +                                  +
Sbjct: 775 VSNGEASEYIKKYFAEYKGVQEYMEQTKAFA--------------------------SSN 808

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            +++    R+     +               R            +Q  + DI+   M N 
Sbjct: 809 GYVINFFGRKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINL 857

Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670
                       +VL +HDE++ E P+     V   +  +M    S    +P+  E    
Sbjct: 858 DQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMEN--STNMDVPIITEIRVG 915

Query: 671 KRYR 674
             + 
Sbjct: 916 NNWM 919


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/667 (11%), Positives = 181/667 (27%), Gaps = 148/667 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83
            +   A+       +    ++   +       ++L +   + V     ++     +    
Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLGNTA-LKV-----YDFKRSKVLLSR 386

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           LGI++    +      +R              L  +    ++     L  +      +  
Sbjct: 387 LGIELSQPSFD-----SR----------LAKYLLSTVDNNEIATIANLYGKTRLVEDEVV 431

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTI 194
                +    +   L     ++                   +L  L + E+ L  +   +
Sbjct: 432 YGKGAKRALPEKAILLSHLARKVTVLVETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKM 491

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G +++ + +  +Q    +   +L ++I  L      +      L   LF   G+   
Sbjct: 492 EIAGIKVERETLQTMQTENEEVLARLTQEIYDLAGEEF-NINSPKQLGGILFEKLGLPTS 550

Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                     T   +L          + IL+    +      +  L + + +DG++    
Sbjct: 551 FTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRY 610

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 611 LQ-DLTQTGRLSSVDPNLQNIP------------------------IRLEQGRLIRKAFV 645

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+G++  I+AF +G DI+ +T  + F     + V+  
Sbjct: 646 PEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPN 705

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y               L + +        + FE +   +++   +  
Sbjct: 706 DRRNAKAVNFGVVYG-----ISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVR 760

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +  +    + L            R +   +     ++               +       
Sbjct: 761 EARDKGYVETLFHR---------RREIPDINSRNFNVRGFAERTAINSPIQGSAADI--- 808

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +    +  N  T                       
Sbjct: 809 ------------------LKIAMIRLDQALTDGNFKTR---------------------- 828

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666
                 +         IVL        E P+    ++ TL   +M         +PLKA+
Sbjct: 829 -----MLLQVHDE---IVL--------EVPENELTAIKTLVKDIMESAIELV--VPLKAD 870

Query: 667 GYEAKRY 673
               K +
Sbjct: 871 ESAGKTW 877


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/692 (16%), Positives = 192/692 (27%), Gaps = 162/692 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           LF+D ET                   + L         + L D  E        L + L 
Sbjct: 25  LFLDTETTGD---------------RLRLVQLG-GQGEIFLLDLFELGERGVLFLKELLS 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSE 120
            + V  V HN  F+     +     I       T V ++        SL++  +      
Sbjct: 69  QKGV--VGHNLKFDLKYLYRY---HIEPYAVFDTMVASQLLAELDRHSLQSVAMHYLGQV 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE------YCKRDVEATRELF 174
               ++          K  ++    D      +    L                 T  +F
Sbjct: 124 LDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLKTRTSRVF 183

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
               P++  E         +   G  +D   +  +     +  +K+   I+         
Sbjct: 184 GLQNPVAIVEMAFVQEVAKLELNGLPVDTQELESV---FREYSRKVQRMIMDFISTHRVD 240

Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 L  +L    G+DL    +    T    LS      + + ++  R  +S   + K
Sbjct: 241 PMSPKQLGEFLTRRLGLDLPKTEKGNVSTDDKALSEHAHHPVVRHILEIR--ASKKILDK 298

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L  + E +  + R+    +  GA  TGR +      QN+P+                   
Sbjct: 299 LEEIRENLRGN-RVYPEFKQIGA-VTGRMASSNPNVQNIPKD------------------ 338

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R    A  G   V+AD + IE R+ A   GE   I+AF  G D++  
Sbjct: 339 ------------LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRY 386

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T +       + ++KE+R + K +   L Y   AK     A+  G+DL            
Sbjct: 387 TASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPV---------- 436

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                                           + +++ + +  +G       + E     
Sbjct: 437 -----------------------------EEAQAIRERFFSYFEGFRDWHNRVKEELKKT 467

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
            +  G     R                                                 
Sbjct: 468 GKSSGHTLLGRSYVAHTF------------------------------------------ 485

Query: 592 TYGGKLTENIVQAISRDILCEG--MKN--ATKNG--YDIVLTVHDEIVSETPDTPYFSVG 645
                     +Q    D+L     M +    K G    +V  VHDEIV E P      V 
Sbjct: 486 ---PDAVNYPIQGTGADLLKLAVLMLDAELRKEGIPAKVVNLVHDEIVLECPQEVAQEVQ 542

Query: 646 TLCSL-MTKNPSWAKG-LPLKAEGYEAKRYRK 675
           TL    M +  S     +P++ E    +R+ K
Sbjct: 543 TLLERAMKRAGSIILKRVPVEVEVTVKERWEK 574


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/520 (13%), Positives = 146/520 (28%), Gaps = 121/520 (23%)

Query: 167 VEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           ++  +E + +L  ++      D E  L  + + +  +G R +  ++  + E    + ++L
Sbjct: 447 IQVDQEYYPKLKEMNLISLYRDVELPLVTILKDMEQKGIRCEEKVLDHIAEGTLAKIQEL 506

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           ++ I K+      +      L + L+    I        T    L          D IL 
Sbjct: 507 EKAIYKVVGHEF-NLNSPKQLAVVLYDELQILKGKKR-STAAGELEKIQGLYTVVDDILA 564

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S         L + + +DG++        A++TGR S      QN+          
Sbjct: 565 YRKYSKLYSTYAEGLKKYIQADGKIHTVYNQA-ATQTGRLSSSEPNLQNI---------- 613

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R   +   G  LV +D   +E R+LA +A     IK
Sbjct: 614 --------------SVRDEEGREIRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIK 659

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF N  DI+  T    F+  +++V+  QR   K +                    G+   
Sbjct: 660 AFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAKTVNFG--------------IVYGISDF 705

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             +                                  +         + +   +  +   
Sbjct: 706 GLASQ------------------------------LGVSRFEARDFIEKYYRVYPEIKTY 735

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            + +                RR         ++                     G+ + +
Sbjct: 736 MESVIHFCKENGYVETLCHRRREIPEIHDKNKQ-----------------IQAFGERAAM 778

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                                +Q  + D++   M    +          ++L VHDE++ 
Sbjct: 779 ------------------NAPIQGTAADLIKLAMIQVREMIDENHLKAKMILQVHDELIF 820

Query: 635 ETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             P      + T+    M    S    +PL +E    + +
Sbjct: 821 NVPLEEVEIMKTIIQKGMETAMS--LDVPLTSEISIGQTW 858


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 358 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 417

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 418 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 475

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 476 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 524

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G   D+D+   L+    +   + +E   +     I +      L+  LF    +     +
Sbjct: 525 GIAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 583

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 584 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 640

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 641 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 675

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 676 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 735

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 736 SKIKAMNYG--------------LAYGLS------------------------------A 751

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 752 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 800

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 801 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 836

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 837 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 894

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 895 LTVSIGVGRSW 905


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 184/659 (27%), Gaps = 126/659 (19%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             +    +A  +               + L  +L D T   + H++    +      G  
Sbjct: 345 GRVDGFGFATQERAAYAGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDAH-GWS 403

Query: 88  IPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +       T++ A           L +  L     E   + + G    + F    +    
Sbjct: 404 LRGL-VTDTALSAYIVAPDQRSYDLADLTLRYLKRELKQEDDGG--QESLFGDDEVGGDG 460

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
              T   + +A  +     + D         RL+   + E  L  L   +   G  +D +
Sbjct: 461 VATTSMLYARA--VLDLAAELDSAVEAAGGDRLLS--EVELPLLHLLARMEKTGIAVDTE 516

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TL 261
            +  L+   A + K+  ++   +    I +      L++ LF    +     ++    T 
Sbjct: 517 HLDALERHFAGQMKQAADEAYGVIGKEI-NLGSPKQLQVVLFDELDMPKTKRTKTGWTTD 575

Query: 262 KSILSHSNITQLAKDLI--LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              L    +      L+  L     +   +  +  L + V  DGR+  T     A  TGR
Sbjct: 576 ADALQQLYVKTEHPFLLALLRHRDVTRLRVT-IEGLLKTVQDDGRIHTTFNQTIA-ATGR 633

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P                                +R   +   G + L+ 
Sbjct: 634 LSSTEPNLQNIP------------------------VRTEEGRGIRKGFVVGGGFESLMT 669

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ ++  I+AF +G D +  T A+ F    D VS EQRA  K M   
Sbjct: 670 ADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYG 729

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           L Y               L ++           FE +     +   + ++       + +
Sbjct: 730 LAYG-----LSAFGLSQQLGIEPSEARGLMEEYFETFGGIRDYLRSLVEEARRTGYTETI 784

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           +G          R     +L   +   E    +                           
Sbjct: 785 MGR---------RRYLPDLLSDNRQRRETAERM--------------------------- 808

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS---RDILCEGMK 615
                                LN              K+    VQA +    D+    + 
Sbjct: 809 --------------------ALNAPIQG---SAADLIKVAMLRVQA-AIDEADLSSRMLL 844

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                         DE+V E       ++ +L    M         +PL         +
Sbjct: 845 QVH-----------DELVFEVAPGEREALESLVRAQMGSAAD--LNVPLDVSVGTGLSW 890


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/648 (16%), Positives = 183/648 (28%), Gaps = 148/648 (22%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN-----SLFERILFKKTLGIDIP 89
           YA  D  V      +     +DL++ L +  V     N     +           G    
Sbjct: 345 YAVQDTTVY--PLED-----ADLVRLLDNADVTLDVFNSAPLYAK------AMAAGGWGS 391

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           S  W    + A      +S                    K  I+        +  + CT 
Sbjct: 392 SIVW-DGKLAAYLLDASAS--------------------KYQISELIPAYKAAAAFTCTD 430

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
                A +L   + +   E T      L    + E  L  +   +   G  +D D + + 
Sbjct: 431 Y--PDAGRLADLFARMKAEITACGEDALYN--EIEFPLAQVLADMTRTGVLVDKDGIEQF 486

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILS 266
              + +E +++   I   T     +      L   LF   G+     +     T    L 
Sbjct: 487 GVKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLE 546

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                 L +D++  R A        +  L + +  DGR+  T     A RTGR S     
Sbjct: 547 SLREYPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                                +R+  +A  G  LV AD + IE 
Sbjct: 605 LQNIP------------------------IRTELGSQLRAYFVAKPGCVLVDADYSQIEL 640

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R+LA I G++   +AF NGEDI+ +T AK +  P  +V+   R+  K +   + Y  G  
Sbjct: 641 RILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKG-- 698

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                +    + +     +    +    +     +                L G      
Sbjct: 699 ---AYSLSKDIGVTVKEADAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGR----- 750

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               R     +     ++      + +                                 
Sbjct: 751 ----RRTLPELASTNFNVRASGERMARNTPIQGTAADVI--------------------- 785

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
           +L    V               R R    K+   ++                       L
Sbjct: 786 KLAMVRV-------------WKRLR--DEKMASRLI-----------------------L 807

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           TVHDE++ E P+        +    M     +A  +PL  + +  K +
Sbjct: 808 TVHDELIVEAPEAEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 165/644 (25%), Gaps = 142/644 (22%)

Query: 42  VKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
             + D  +       +L ++L +       H+S        +  G+ +       TS+ A
Sbjct: 341 AIVQDLADVDPKDEKVLAEWLANPQATKWLHDSKQTYHTL-QDQGLKLDGVE-HDTSLAA 398

Query: 101 RTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                      L +                G  L              +  RA   +   
Sbjct: 399 YLLRPDVRTLGLADVVQRH----------VGHELSENATGPERAQAVAELVRALTPEIEA 448

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
                   D+E    L                +   +   G  +D   + +L +      
Sbjct: 449 AGQAELYFDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARL 492

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG------TLKSILSHSNIT 271
            +      +L      +      L+  LF    +     ++            L+  +  
Sbjct: 493 NEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNH 552

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                L+ +R      +   ++ L EAV  DGR+  T    GA  TGR S      QN+P
Sbjct: 553 PFLGHLMAHREYQKMKST--IDGLIEAVGDDGRIHTTFNQKGA-ATGRLSSSDPNLQNIP 609

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390
                                       A   +R+      G   L+ AD + IE RV+A
Sbjct: 610 ------------------------VRTDAGRKIRAAFTVGEGYETLLTADYSQIEMRVMA 645

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ +   I+A+A+GED++    ++ F+ P+D+V+ E R   K +   L Y         
Sbjct: 646 HLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYG-----LSA 700

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L +          + FE +   + +   + +   E    + L G          
Sbjct: 701 FGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGR--------- 751

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +    +   E                                        +L  
Sbjct: 752 RRYLPELNSSNRVARENAERAALNAPIQGTAADII---------------------KLAM 790

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
             V  + +    A+                             +               D
Sbjct: 791 LRVDREITRQQLASRV---------------------------LLQVH-----------D 812

Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E        +  L    M         +PL         +
Sbjct: 813 ELVVEVAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDSW 854


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/707 (15%), Positives = 205/707 (28%), Gaps = 189/707 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET    P              + L   A +D PV + D         +L+  +
Sbjct: 23  KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----SLKNAC-LA 115
              + + +  N+ F+       + +DI       T + ++           +LK      
Sbjct: 73  LSTSGIKIFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN      +                       T     +  +    Y  RD E    L K
Sbjct: 130 LNEDLDKEE----------------------QTSNWQGELTESQILYAARDAEILLRLRK 167

Query: 176 RLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +IP             E         +  RG  +D     +L E    ERK   +++  
Sbjct: 168 VMIPQILENHLTQIAGIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYT 227

Query: 227 LTDGIIR-------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
             +  +              +      +   L    GI +   ++  L     +      
Sbjct: 228 YVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEH-GIPVAATAKQDL-----YPYRRHP 281

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +L+   ++ S    L   +  +    GRL        A  +GR S      Q +PR
Sbjct: 282 LVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPR 340

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                           R+C  A  G+KL++AD + IE RV A I
Sbjct: 341 DS----------------------------EFRACFAAPPGRKLILADYSQIELRVAAQI 372

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           +G+   I A+  GED+++ T +   + PI +++ ++R   K +   L +  GA   +  A
Sbjct: 373 SGDTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYA 432

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                                       ++        ++ +  
Sbjct: 433 QQN--------------------------------------YGVEMSLEQATEFRERFFK 454

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            + G+ +  + +                                       + R+ VY +
Sbjct: 455 AYTGIHRWHQSIKAHLPKEG----------------------------RTLAGRKFVYYE 486

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNATKN---GYDIVLTV 628
             G   Y NT                   VQ  + DI+ + +     +       IV  V
Sbjct: 487 KAGLPGYYNT------------------PVQGTAADIVKKALGLLIERLAGTDTYIVGIV 528

Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
           HDEI+ E+P     ++   L S M +   +    +P K +   ++ +
Sbjct: 529 HDEILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 575


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/538 (13%), Positives = 151/538 (28%), Gaps = 119/538 (22%)

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           T   H+       +  K  +    +  ++L    + E  + ++   +   G ++    ++
Sbjct: 5   TLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLV 64

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264
           K++  +      L   I +L      +      L + LF    +     ++    T   +
Sbjct: 65  KMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDV 123

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L            IL+    S      +N L + + +DG++         + TGR S   
Sbjct: 124 LEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGRLSSVE 182

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383
              QN+P                                +R   +       L   D + 
Sbjct: 183 PNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQ 218

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442
           +E RVLA ++ E   ++AF  G DI+  T  K F     D+V+   R   K +       
Sbjct: 219 VELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF----- 273

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+     ++N+                               +    
Sbjct: 274 ---------GIVYGISDYGLAKNL------------------------------GISRQE 294

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  ++  +    K   +           +                        
Sbjct: 295 AQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------------- 331

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---- 618
              RR +  D+      + +      R          + +Q  + DI+   M        
Sbjct: 332 ---RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKMQSELE 379

Query: 619 --KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
             K    ++L +HDE++ + P      + TL   +M +       +PL A+      +
Sbjct: 380 QRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADANWGHNW 435


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81
             +    +   A    D     +D  E S    D+    L D+      H++        
Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137
              G ++       T + +             +A    LN +    +    +A++     
Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 457

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              +S              +          E        L  L D E  +     ++   
Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 506

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G   D+D+   L+    +   + +E   +     I +      L+  LF    +     +
Sbjct: 507 GIAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 565

Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         L  +   +    LA  L+ +R A        ++ L + +  DGR+  T  
Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+ AD + IE R++A ++G+   I AF +G+D +  T +  F    + VS  QR
Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M                    GL                                
Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
              + + K+     + +   + ++   V +  +++ +           +           
Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                           RR    D+            +               +Q  + D+
Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818

Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662
           +   M    +          ++L VHDE++ E        V  +  + M         +P
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876

Query: 663 LKAEGYEAKRY 673
           L       + +
Sbjct: 877 LTVSIGVGRSW 887


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 106/793 (13%), Positives = 198/793 (24%), Gaps = 202/793 (25%)

Query: 5   FIDIETRSPQPLPKVGV---WAYAEQAV-ITLCA---YAWDDEPVKLWD-RTEQSAMPSD 56
             D E  +   +  VG       + Q   I L       + + P    D           
Sbjct: 137 ACDTE-VADIDVKSVGPVGNGKVSLQFEDIALYDGPDVNYGNGPYIWVDNLDNAEGTLEY 195

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLK 110
              +L D ++  V HN  F+R +     GI++       T  +AR            SL+
Sbjct: 196 FRAFLEDSSLKKVWHNYSFDRHVLFNH-GINVQGLH-GDTMHMARLWNTARFKRGGYSLQ 253

Query: 111 NACLALNFSEHL-TKMEEGKALIARFCKGSI-DSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                L        K   G     +        + P              +  Y   D E
Sbjct: 254 ALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWIRYSVFDAE 313

Query: 169 ATRELFKRLIPLSDGER--------------------------DLWLLDQTINDRGYRID 202
           +T  L + L    +                                     I  +G  +D
Sbjct: 314 STWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIERKGMNVD 373

Query: 203 LDLVLKLQELIAQERKKLDEDI------------------VKLTDGIIRSSRQTYALRMY 244
              + ++++    +RK+L++ +                        ++ +       +  
Sbjct: 374 RAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPYSDAQGKAI 433

Query: 245 L-------------FLITGIDLVDM------------------------SEGTLKSIL-- 265
           L              +  G                              +   L+ +   
Sbjct: 434 LPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTPISFTASGLPSVTASVLEELAGN 493

Query: 266 ------------SHSNITQLAKDLILNRLASSGSAI------LKLNTLSEAVSSDGRLRG 307
                        H    +          A    +         +  L E   S GR+  
Sbjct: 494 PEANPPKYGKAYDHFADKEEGAAACHALRALYEISSINTMLNNFILPLQELADSAGRVHC 553

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           +L     + TGR S      QN P  E+                            +R  
Sbjct: 554 SLNLN--TDTGRLSSRKPNLQNQPALEKDRY------------------------KIRDA 587

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +A  GKKL+VAD + +E R+LA I      I+AF  G D +  T    ++         
Sbjct: 588 FVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYD--------N 639

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
                +  E+ L +                         +  +T     +  +  +    
Sbjct: 640 VAKAVESGEVLLEWDYTKGT-----------SPPVPLLKEKFATERKNAKILNFSIAYGK 688

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                +    +       +   W    Q V +  +   +           +         
Sbjct: 689 TPFGLSKDFGVRRVEASKILDKWYGGRQEVRKWQEQAIDTARKFGYTRTLMGRY------ 742

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RRL  + +K +      A S   R            +Q  + 
Sbjct: 743 ------------------RRLPDAMLKSNSFISRKAQSHAERAA------VNTPIQGAAA 778

Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG 660
           D++ + M    K       G+++V  +HDEI+ E P+        +   LM         
Sbjct: 779 DLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDLMENPFEHPLS 838

Query: 661 LPLKAEGYEAKRY 673
           + L+ +    + +
Sbjct: 839 VDLQVDAKIDRSW 851


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/623 (13%), Positives = 172/623 (27%), Gaps = 136/623 (21%)

Query: 73  SLF----ERILFKKTLGIDIPSK-----RWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             F    +           +         ++   +        + +              
Sbjct: 2   IKFIAELDIKFISYNFKALLNLGFTFKSMYMDMMIAYHLISSQTKMDVL-----LPITEY 56

Query: 124 KMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATRE-LFKRLIPLS 181
              E K     F K  I++   D   R        +   Y + +    +E L   L    
Sbjct: 57  SKVEAKDFKTTFGKTHIETLLVDEFARYLSNIGLGILACYDEINHLLHKEELHNIL---I 113

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E  L  +   +  +G +ID+         + +E  K ++ I +       +      L
Sbjct: 114 QNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEF-NINSPKQL 172

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSE 297
              LF+   +     ++    T   +L            L+L+    +      ++TL  
Sbjct: 173 GDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPN 232

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V S+ R+  +    G + TGR S      QN+P                          
Sbjct: 233 LVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIP------------------------VK 267

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   +A  GK L+  D + +E RVL  ++ ++  IKA+   +D++  T  + F
Sbjct: 268 TDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYREEKDLHDLTARRIF 327

Query: 418 NT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           N    D V++EQR I                                             
Sbjct: 328 NLSDSDDVTREQRTIA-------------------------------------------- 343

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  +  +         A + K+         K +  ++  V    K++ E          
Sbjct: 344 KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKT 403

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                        R+   S +        T  +Q  R       
Sbjct: 404 LF--------------------------GRKRYISGIDSKN---KTIKAQAERMA----- 429

Query: 597 LTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650
               ++Q  + ++L + M         K+   ++L VHDE++ E  +        +   +
Sbjct: 430 -VNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQVHDELIFEVEENSVEKYSEILADI 488

Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673
           M       + + L       K +
Sbjct: 489 MKNTVKL-EDVNLNININTGKNW 510


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/568 (16%), Positives = 160/568 (28%), Gaps = 126/568 (22%)

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           K      L +          P  C    + +A+       +   EA  E +  L    +G
Sbjct: 338 KYPFDIKLASYLVNPDSKGNPRVCFENINDEAFAKLMNLSEE--EAILESYPFLREYIEG 395

Query: 184 ----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                     E  L  +  ++  RG +ID + +   +  +A +    ++ I  L      
Sbjct: 396 NNLNFLLSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALAGEEF- 454

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +   T  L+  LF   GI  +  ++    T    L           LI+   A S     
Sbjct: 455 NINSTKELQRILFEKLGIKPIKKTKTGYSTDSESLQMLAQKYEIAQLIITYRAISKVIST 514

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +    + +    RL  T      + TGR S      QNLP  +                
Sbjct: 515 YIRPFLDKMDKSNRLHTTFNQT-LTSTGRLSSSNPNLQNLPAGD---------------- 557

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R  ++A  G KL+ +D + IE RVLA ++ +   I+ F N EDI+ 
Sbjct: 558 -------DELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHT 610

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  K F      V    R + K +                    G+             
Sbjct: 611 QTAVKIFGVHPSMVDHHLRRMAKTIN--------------FGIIYGMG------------ 644

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                             Y   +    +         + +  +  GV      +      
Sbjct: 645 ------------------YVSLSKTLNISKDKARQFIEKYFERFAGVKSY---IENTTEK 683

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
             + G                        +     RR  + ++  +   L     +    
Sbjct: 684 ATKNG-----------------------FVETYFGRRRYFFNINSNNKRLAQFEKRA--- 717

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT 646
                      +Q  + DI+   M    +        IVL VHDE++ E  +    +V  
Sbjct: 718 ------AVNATIQGTAADIIKIAMVKLYEKLKNLDAHIVLQVHDELLVEAKEDIAENVAG 771

Query: 647 LCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           +    M     +   +P+K     A  +
Sbjct: 772 IVKDTMENAVKF--DIPIKTNTKIANNW 797


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/647 (14%), Positives = 177/647 (27%), Gaps = 140/647 (21%)

Query: 38  DDEPVKL-WDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           D + V +  D  +        +  +L D       H++           G+++       
Sbjct: 342 DGDHVGVEMDLADLDPKDEKAIKTWLADPASPKWFHDAKRAFHALA-PQGLELDGVE-HD 399

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQ 154
            S+ A        +      L                    +   ++  +D  +A   + 
Sbjct: 400 ASIAAYLLRPDVRISGLGDIL--------------QSQAGRELPANADGFDRAQAVRDLV 445

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                     +  E   +L          E  L L+   +   G  +D + + +L    A
Sbjct: 446 KVLTEKLAAAKQEELYYDL----------EVPLCLILARMEHEGIAVDGEHLQELSNDYA 495

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSH 267
            +  +      +L      +      L+  LF    +     ++         L+ + + 
Sbjct: 496 AKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQ 555

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           +N   LA  L+ +R          ++ L EA+  DGR+  T    GA  TGR S      
Sbjct: 556 TNHPFLAH-LMAHREYQKMKTT--IDGLIEAIGDDGRIHTTFNQKGA-ATGRLSSSDPNL 611

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN+P                            A   +R+   A  G+ L+ AD + IE R
Sbjct: 612 QNIP------------------------VRTDAGRRIRAAFHAGWGETLLTADYSQIEMR 647

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           V+A ++ ++  I+A+ +GED++    ++ F+ P+D+V+ E R   K +   L Y      
Sbjct: 648 VMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVYG----- 702

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                    L +      V   + F  +   + +   +  Q  E    + L G       
Sbjct: 703 LSAFGLSQQLGISAGEAKVIMENYFTRFGGVKRYLDEVVHQAKETGYTETLYGR------ 756

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              R     +    +   E                                        +
Sbjct: 757 ---RRYLPELNSSNRVARENAERAALNAPIQGTAADII---------------------K 792

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           L    V       N  +                             +             
Sbjct: 793 LAMLRVDRAIREQNLKSRV---------------------------LLQVHD-------- 817

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
              E+V E        V  L    M         +PL+      K +
Sbjct: 818 ---ELVVEVAKGELDKVSELVQREMDAAAR--LRVPLEISAGHGKNW 859


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 125/333 (37%), Positives = 175/333 (52%), Gaps = 16/333 (4%)

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----ED 407
           +A  + LAS  +R CI+A  GKKLVV+DL+ IE R+LAW+AGE WK+ AF         D
Sbjct: 1   MASVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPD 60

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +Y   YA+AFN   + V+K QR IGKVMEL LG+ GG   F T A   GLDL++ +    
Sbjct: 61  LYKLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAAL 120

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                +   +A+  +     +   + + +++   AC+ +K+ WR  H      W  L   
Sbjct: 121 PNIPRDVQREAKGWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPETCDFWYQLERT 179

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NT 582
               +             V R         + I LPS R L Y      KG+ +Y+  N+
Sbjct: 180 VRTAIATPAKTLYCGYLKVRR-----DGAWLRIQLPSGRALCYPSPTIEKGNITYMGINS 234

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            + +  R +TYGGKL EN+ QA +RD+L   M      GY IVLTVHDE++ E PDT  +
Sbjct: 235 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDY 294

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L SL++ NP WA  +PL A G+EA  YRK
Sbjct: 295 TDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 94/341 (27%), Gaps = 58/341 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE  + V  N  ++R +     GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L       +   GK                      +  A +  G Y   D + 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L  ++ P               E  L  +   I   G +ID  ++    E +     
Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274
           +L++   ++      +   T  L+  LF   GI  +  +      T + +L    +    
Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314
             +IL     +       + L   ++   GR+  +      
Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 89/659 (13%), Positives = 179/659 (27%), Gaps = 147/659 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L + + +      + FE +   +++   +  + 
Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREA 761

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            +    + +            R     +     ++        +      SA  +  V  
Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +              R L  ++ K                                  
Sbjct: 813 INLD-------------RALTENNFKS--------------------------------- 826

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                +         IVL V        P+    +V  L    M      A  +PL A+
Sbjct: 827 ---RMLLQVHDE---IVLEV--------PNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 88/642 (13%), Positives = 168/642 (26%), Gaps = 126/642 (19%)

Query: 44  LWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D  +           +L D     V H++     +  +  G  +   R   T++ A  
Sbjct: 357 WFDPAQLDETDETAFAAWLADADRPKVFHDAKGAMRVLAEH-GWSVDGVRM-DTALAAYL 414

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L+              +A     + ++        + +   ++
Sbjct: 415 VKPGRRSFALDALSLEYLHRELAPA--AAADGQLAFGADEAAEAEMLMIQARSILDLGEV 472

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    +    A          L D E     L   +   G   D   +  ++++ A   +
Sbjct: 473 FEGRLEEVGAADL--------LRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQ 524

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273
           +  ++          +      L+  LF    +     ++    +               
Sbjct: 525 QAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTDNE 583

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              ++L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P  
Sbjct: 584 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 639

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392
                                         +R   +   G + L+ AD + IE RV+A +
Sbjct: 640 ----------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHL 677

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF +GED++ T  ++ F      V  E R   K M   L Y           
Sbjct: 678 SEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYG-----LSAFG 732

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L+++         + FE +     +     D+         L G          R 
Sbjct: 733 LSQQLNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGR---------RR 783

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    +   E    +                             +L   R L  +D
Sbjct: 784 YLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI------------AMLNVDRALREAD 831

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           +K                                       M           L VHDEI
Sbjct: 832 LKSR-------------------------------------ML----------LQVHDEI 844

Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           V E       +   +    M+         PL         +
Sbjct: 845 VLEIAPGERAATEEIVRREMSGAVQLRA--PLDVSVGVGPDW 884


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 190/662 (28%), Gaps = 146/662 (22%)

Query: 32  LCAYAWDDEPVKLWDRTEQ----SAMPSDLLQYLRDETVMCVAHNSLF-ERILFKKTLGI 86
             +             +           +LL+      +  +++   F + +      G 
Sbjct: 364 GISVTLKSGN-YYMPLSHDYIGSENNSIELLKKFLSADIEFISY--KFKDIL----NEGY 416

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141
           +I +  +    +        +  K +   +  +E      L K   GK            
Sbjct: 417 EIKNIHF-DVMIAYFLL--TAQTKESIEVVLHNETGDDFPLYKDIFGKE-------DPSK 466

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
            P  +       ++  L+  Y         E    L    + E  L L+   +   G  I
Sbjct: 467 LPVEEYGEFMMKRSESLYDIYKDLKNRIELEDMHDLF--YNVEMKLILILSKMEQEGIAI 524

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
           D +   +    ++ + ++L ++I K+++    +      L   LF+   I+ V  ++   
Sbjct: 525 DPEYFREFSLELSDKLQELKKNIFKISEEEF-NLNSPKQLAEILFMKLNIEPVSKTKTGF 583

Query: 259 GTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
            T   +L           + IL+    +      ++ L +      RL  T    GA  T
Sbjct: 584 STNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERNRLHTTFNQTGA-AT 642

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P                                +R   I+  G  L+
Sbjct: 643 GRLSSSNPNLQNIP------------------------VKSDEGIKIRRGFISDKGNTLL 678

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE RVLA ++ ++  IKA+++G D++  T  K F+   D    +          
Sbjct: 679 AIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDIDTDVTRSQ---------- 728

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                  +  +  +         + +  
Sbjct: 729 -----------------------------------RTMAKIVNFSIIYGKTPFGLSKELG 753

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   K +  ++  V +L + + +                               
Sbjct: 754 ISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVKTYF------------------- 794

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R+     +      +     Q  R           ++Q  + DIL + M   
Sbjct: 795 -------GRKRSVDGISSKNGNIK---KQADRMA------VNTVIQGTAADILKKVMIEI 838

Query: 618 TKNGYD-----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAK 671
            K   D     + L VHDE++ E  D         + ++M  +  + K + L+A   + K
Sbjct: 839 DKKIKDKNDIKMNLQVHDELIFEVKDESVEKYADLIKNIMENSIKF-KNVKLEANVAQGK 897

Query: 672 RY 673
            +
Sbjct: 898 NW 899


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 94/622 (15%), Positives = 180/622 (28%), Gaps = 144/622 (23%)

Query: 78  ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIA 133
            +   +LG+D+  + W  T +            +        L              L  
Sbjct: 437 HILA-SLGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDL 494

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                  D          H+   +   +     ++  RE F+ L  +   E  +  +   
Sbjct: 495 SGDVDPADQ----RKDLLHMAMVRALADMLAAKID-EREQFRLLQSI---ELPVSHVLFG 546

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G  +D   + ++++  A + +   ++      G   + +    L+  LF   G+  
Sbjct: 547 MEQVGASVDFMRLTEMRDRFAVDARDA-QETAWQFAGSRVNLQSPKQLQAVLFDDMGLKP 605

Query: 254 VDMSEG----TLKSILSHSNITQ--------LAKDLILNRLASSGSAILKLNTLSEAVSS 301
              ++     T  S L    +              L+ +R  +    I  + +L +AV+ 
Sbjct: 606 TKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI--VQSLIDAVNP 663

Query: 302 D-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           D GR+  T +   A  TGR S      QN+P                             
Sbjct: 664 DDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAE 698

Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +RS  +   G + L+ +D + +E R++A ++G+D  I+AF +G D +    +  +  
Sbjct: 699 GREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGI 758

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+D ++ +QR   K M   L Y        T                             
Sbjct: 759 PVDDITPDQRTHVKAMSYGLAY-----GLSTYGL-------------------------- 787

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                        A + K+     + +K  + A    V +  + L               
Sbjct: 788 -------------AQQLKISPGEADRLKSQYFATFGKVHEYLESLVADAREKGYTETMF- 833

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     RR  +  ++     +  A  +             
Sbjct: 834 -------------------------GRRRYFPGLQSPNRNIRDAAERG---------ALN 859

Query: 600 NIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
             +Q  + DI+   M        K      I+L +HDE+V E        V  L    M 
Sbjct: 860 APIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVTGLVRDAME 919

Query: 653 KNPSWAKGLPLKAEGYEAKRYR 674
                A  +PL         ++
Sbjct: 920 HAVDLA--VPLDVSTGIGSDWQ 939


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 91/652 (13%), Positives = 175/652 (26%), Gaps = 135/652 (20%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E   I L   A ++ PV ++D      + +   L + L DE ++ 
Sbjct: 1263 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320

Query: 69   VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
            +  N  F+          +        T + ++      ++         +  + K    
Sbjct: 1321 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLSV 1373

Query: 129  K-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                  +    +      +        +  L   Y K   + T E  +    ++D E   
Sbjct: 1374 YLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQITAENMQI---VNDIENKC 1430

Query: 188  WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             L    +   G ++DL+ + K  + I  E     + + K       +      +   L  
Sbjct: 1431 ILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKKELKNDDINVNSQQQILKALQD 1490

Query: 248  ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
                DL +            + I   A  L+ N              L   ++    ++ 
Sbjct: 1491 NNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAFYLKLPLHINKKTNKIH 1550

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
             T      + +GR+S      Q +PRQ                              +R 
Sbjct: 1551 TTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNIRE 1581

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
              I +     ++AD   IE ++ A I  ++  +KA+ N  D++  T +      I++++K
Sbjct: 1582 IFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINK 1641

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            E R + K +   L Y       +T                        +   + +     
Sbjct: 1642 EDRHVAKAINFGLLYGMNYVNLRT--------------------YANTYYNVKMNLDQ-- 1679

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                            C     ++   ++G+ +                 S  + R    
Sbjct: 1680 ----------------CLYFYNSFFEHYKGLSRWH----NSVKQTKALEYSTLSNRKVVF 1719

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            P                                                K     VQ   
Sbjct: 1720 PYFSFT-------------------------------------------KALNYPVQGTC 1736

Query: 607  RDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653
             DIL   +    KN       I+L VHDEI+ E            L   M  
Sbjct: 1737 ADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVESMEN 1788


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 81/662 (12%), Positives = 165/662 (24%), Gaps = 141/662 (21%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L     +       ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LG+D+       + +                               +  A + 
Sbjct: 377 SKVLLSHLGVDL-PAPAFDSRLAKYLL-STVDDNELSTIARL----YTDYVLDSDEAVYG 430

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCK---RDVEATRELFKRLIPLSDGERDLWLLDQT 193
           KG   + P      +H+    +   Y +    D     +    L    D E+ L  +   
Sbjct: 431 KGVKRAVPKKAVLLSHLARKIVVLNYSEKVMLDKLTEHQQASLLF---DMEQPLANVLAK 487

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           +   G  +    + +++        +L ++I  L      +      L   LF    +  
Sbjct: 488 MEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPT 546

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                      T   +L            IL     +      +  L + +  DG++   
Sbjct: 547 SYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTR 606

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P                                +R   
Sbjct: 607 YLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 641

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSK 426
           +     + L+ +D + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+ 
Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L + +        + FE +   +++   + 
Sbjct: 702 NDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545
               +    + L     EL           +     ++ +      +      SA  +  
Sbjct: 757 RDAKDKGYVETLFHRRREL---------PDINSRNFNIRQFAERTAINSPIQGSAADILK 807

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
           +  + + +   D                                                
Sbjct: 808 IAMINLDKALVDGQFKT------------------------------------------- 824

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
                 + +         I+L V        P     +V TL    M         +PL 
Sbjct: 825 ------KMLLQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--LSVPLI 865

Query: 665 AE 666
           A+
Sbjct: 866 AD 867


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 90/633 (14%), Positives = 169/633 (26%), Gaps = 148/633 (23%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             +   L D+++  + ++      L K                ++        S      
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLS------ 425

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                               F +   ++   +    +          Y +   E      
Sbjct: 426 ----------------QKNLFKEVLKETWIENIIIESAKIVINFIALYKQTIWELKDNKT 469

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            RL    D    +  +   +   G  +D + + +L      E  KL+E+I  L+     +
Sbjct: 470 FRLYSNID--LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-N 526

Query: 235 SRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSA 288
                 L   LF    +          S  T   IL   +       DL+L     +   
Sbjct: 527 IGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLK 586

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               ++L + + +      T     ++ TGR S      QN+P                 
Sbjct: 587 NTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP----------------- 629

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                        + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N +DI
Sbjct: 630 -------IRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDI 682

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T  + FN    +++ E R   K +                    G+           
Sbjct: 683 HTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---------- 718

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                   A +  +         K + A+++GV +  +      
Sbjct: 719 --------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA 758

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
           +                                    R+     +               
Sbjct: 759 SSNGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAE 787

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642
           R            +Q  + DI+   M N        K    +VL +HDE++ E P     
Sbjct: 788 RAAINAP------IQGTNTDIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVE 841

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +  +M  + + A  +P+  E      + 
Sbjct: 842 IITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/665 (14%), Positives = 187/665 (28%), Gaps = 145/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            +   A       V      E  + +   L  +   E +    +N   +        GI 
Sbjct: 328 KLEGLALTQGSG-VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIV 385

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLT-KMEEGKALIA---RFCKGSID 141
           I           +               L     +     +           RF K   +
Sbjct: 386 IREI--------SYDL-------ALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEWGN 430

Query: 142 SPPYDCTRANHVQAW-QLFGEYC--KRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197
           S           + +   F  Y    +D        K L  +  D E  L  +  ++   
Sbjct: 431 SGLPIGRLPEQPEQYFGEFVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERA 490

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D++ +  L+ L   E   L E+I  L+ G   + +    L   L+   G+  +D +
Sbjct: 491 GVPLDVEELAILEALFETELAVLTEEIYDLSGGPF-NIKSPKQLSDILYNELGLRPIDKA 549

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
           + T   +L          + +L            +  L + V     R+  +    GA  
Sbjct: 550 KSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-V 608

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKK 375
           TGR +      QN+P                                +R     +     
Sbjct: 609 TGRLACRDPNLQNIP------------------------IRSERGILLRKAFRLSEKNSY 644

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +
Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              +                                                Q    A  
Sbjct: 705 NFGIV--------------------------------------------YGQQAFGLAKV 720

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     + + +A+ +++  +    ++  +  A  ++    +   R+ +          
Sbjct: 721 LKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDS-------WN 773

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                   S R                                   +Q  + +++   M 
Sbjct: 774 EFPGSRAASGRF-----------------------------AVNTRIQGSAAELIKLAML 804

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
           +        +    ++L +HDE++ E P+     +  L    M    +    +P+     
Sbjct: 805 DISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNIL 862

Query: 669 EAKRY 673
             K +
Sbjct: 863 IGKNW 867


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/674 (14%), Positives = 179/674 (26%), Gaps = 150/674 (22%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           L + + D       D T    +P D   L + L D     +  ++        +  G+ +
Sbjct: 355 LVSLS-DGVRAVAIDLT--KILPEDEAALAELLADVERPKLVADAKGSWHAL-RARGLTM 410

Query: 89  PSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                   S+             +       L           G+         S     
Sbjct: 411 DGV-VADPSLAGYLCRPEQRSYDVDTLTQRWLGIDL----AVVGEGQNQADAGSSQSQSA 465

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTI 194
           +D   A    A         R       L   L              D E  +      +
Sbjct: 466 FD-LDALASDAVPAAHLASARRAAVLLPLQVVLDEQMADRDALGLFADLEMPVAATLTVM 524

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
            D G  +D  ++   +  +        E         + +      L+  LF    +   
Sbjct: 525 EDVGIAVDDAVLAVRETELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELKMPKT 583

Query: 255 DMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
             ++    T    L+           ++L+ +R A        +  L +A+ SDGR+  T
Sbjct: 584 RKTKTGYTTDAEALAGLYAKTSHPFLENLLEHRDAIKLRQT--VEGLRKAIQSDGRIHTT 641

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            Q   A  TGR S      QN+P                                +R   
Sbjct: 642 FQQTIA-ATGRLSSTDPNLQNIP------------------------ARNEEGMRIRQAF 676

Query: 369 IASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
               G   L+ AD + IE R++A ++G+   I+AF +GED++    A      +D V+ +
Sbjct: 677 TVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIDVDDVTAQ 736

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           QR+  K M   L                GL                              
Sbjct: 737 QRSHVKAMSYGL--------------AYGLSTF--------------------------- 755

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                A +  +       ++ A+ A+   V    + + E                     
Sbjct: 756 ---GLARQLGIGNAEAADLRNAYFARFGRVHDYLESVVEQARRDGYTQTMF--------- 803

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR    D+  D         +               +Q  + 
Sbjct: 804 -----------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQGSAA 837

Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKG 660
           DI+ + M +  +          ++L +HDE++ E       +V T L   M         
Sbjct: 838 DIVKKAMIDVDRALSEQGLSSRVLLQIHDELLVEVASAEVEAVETLLKEQMGGAAE--LS 895

Query: 661 LPLKAEGYEAKRYR 674
           +PL       + +R
Sbjct: 896 VPLDVAVGRGRTWR 909


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/676 (12%), Positives = 183/676 (27%), Gaps = 152/676 (22%)

Query: 27  QAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-- 76
              I            +AW  +                  ++L  +T + V     ++  
Sbjct: 325 HFEIFGDNYHTEPIIGFAWGTKGQLYVSTDTGLLQTPIFKEFLE-KTPLKV-----YDFK 378

Query: 77  -RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
              +    LGI + +  +      +R              L  +    ++    +L ++ 
Sbjct: 379 RAKVLLSHLGITLQNPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQI 423

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERD 186
                +       +    +   L     ++               +   +L  L D E+ 
Sbjct: 424 TLPLDEVVYGKGAKKIIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQP 483

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +   G +++   +  +Q       ++L ++I +L      +      L + LF
Sbjct: 484 LAAVLAKMEIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILF 542

Query: 247 LITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
               +             T   +L            IL     +      +  L + +  
Sbjct: 543 EKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILE 602

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DG++         ++TGR S      QN+P                              
Sbjct: 603 DGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQG 637

Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +       L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN  
Sbjct: 638 RLIRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIE 697

Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             + V+   R   K +   + Y               L + +        + FE +   +
Sbjct: 698 KPEDVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIK 752

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSI 538
            +   +  +  +    + L            R +   +     ++        +      
Sbjct: 753 DYMERVVREARDKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQG 803

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
           SA  +  +  + +                                  Q +    Y  K+ 
Sbjct: 804 SAADILKIAMIHLD---------------------------------QALEAGAYKTKM- 829

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
                          +         IVL V        P     ++  L    M      
Sbjct: 830 ---------------LLQVHDE---IVLQV--------PTDELAAIKALVKETMESAIEL 863

Query: 658 AKGLPLKAEGYEAKRY 673
           A  +PL+A+  E K +
Sbjct: 864 A--VPLEADENEGKTW 877


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 152/679 (22%)

Query: 37   WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
            + +E V +   T +    + L  +   E    V +N+   R    +  G ++        
Sbjct: 469  FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELSGT-VRDV 526

Query: 97   SVLARTNGLPSS-LKNAC---LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRA 150
            ++L       +S LK A      L +S      + GK    +A        +        
Sbjct: 527  NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586

Query: 151  NH----------------VQAWQLFGEYCKRDVE-----ATRELFKRLIPLSDGERDLWL 189
                               +      +Y    ++       +  ++R+  L D E  L  
Sbjct: 587  AASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVEYRRVGSLLDMELPLSR 646

Query: 190  LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
            L + + D G  +D  L+ +  + ++ E K+ +    +     + +      L+  LF   
Sbjct: 647  LLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDVLFNQL 705

Query: 250  GIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            G+     ++    T    L    +       + L+  R  S    +  +  L + ++SDG
Sbjct: 706  GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDRIASDG 763

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+  T     A  TGR S      QN+P                                
Sbjct: 764  RIHTTFGQTVA-ATGRLSSLDPNLQNIP------------------------ARTDDGAR 798

Query: 364  VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA      L+ AD + IE R++A ++G++  I AF +GED++ +  A  F    +
Sbjct: 799  IRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAPE 858

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
             V+  QR   K     L                GL                         
Sbjct: 859  AVTATQRTHVKATSYGL--------------AYGLS------------------------ 880

Query: 483  LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                      A + ++     + + + + ++   V    + +      V           
Sbjct: 881  ------AFGLAGQLRISQGEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMW---- 930

Query: 543  VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                   RR     ++     +     +               +
Sbjct: 931  ----------------------GRRRYLPGLRATNRVVAENARRA---------ALNAPI 959

Query: 603  QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
            Q  + D++ + M            G  I+L +HDE+V E       ++  +    MT   
Sbjct: 960  QGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAMTSVV 1019

Query: 656  SWAKGLPLKAEGYEAKRYR 674
                 +PL+        +R
Sbjct: 1020 E--LRVPLEVSVGVGANWR 1036


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/672 (13%), Positives = 180/672 (26%), Gaps = 147/672 (21%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77
             I             AW D+            +     L  +L ++T+        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374

Query: 78  I---LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKAL 131
               +      I +P   +  + +          +SL          S    +   GK  
Sbjct: 375 KRGKVLLDRKEITLPPATF-DSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKG- 432

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLL 190
                         +        A ++       +   T  E  ++L  L D E  L  +
Sbjct: 433 --------AKLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANV 484

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G +++ + +  +Q        +L ++I +L      +      L   LF   G
Sbjct: 485 LAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEEMG 543

Query: 251 ID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +             T   +L            IL     +      +  L +A+  DG++
Sbjct: 544 LPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKI 603

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                    ++TGR S      QN+P                                +R
Sbjct: 604 HTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLEQGRLIR 638

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DK 423
              + S     L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F     + 
Sbjct: 639 KAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAED 698

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+   R   K +   + Y               L + +        + FE +   +++  
Sbjct: 699 VTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYME 753

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARR 542
            +  +  +    + +     EL           +     ++        +      SA  
Sbjct: 754 TIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPIQGSAAD 804

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
           +  V  + + +                                      T  G  T  ++
Sbjct: 805 ILKVAMINLDK------------------------------------ALTEAGLATRMLL 828

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGL 661
           Q                    IVL        E P     +V   +   M    S    +
Sbjct: 829 Q-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAIS--LSV 862

Query: 662 PLKAEGYEAKRY 673
           PL A+  E   +
Sbjct: 863 PLIADENEGSTW 874


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/691 (13%), Positives = 186/691 (26%), Gaps = 156/691 (22%)

Query: 9   ETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63
           E  S         +G   + E     L   AW +        T   ++  +    + L  
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369

Query: 64  ETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL--N 117
              +       ++     +      ID+P   +  T +          +L +    L  N
Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN 421

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     GK                        +  +   +  K  V++   + ++L
Sbjct: 422 LPLDTDDAVYGKGAKR--------------AIPEKTRFLEHLAKKVKVLVDSEANIMQQL 467

Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                     + E+ L  +   +  RG ++  + + ++     +  + L ++I +L    
Sbjct: 468 KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQE 527

Query: 232 IRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   LF   G+             T   +L            IL     + 
Sbjct: 528 F-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITK 586

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                +  L + +  DG++         ++TGR S      QN+P               
Sbjct: 587 LQSTYIIGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP--------------- 630

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   + S     L+ +D + IE RVLA I+ ++  I AF  G
Sbjct: 631 ---------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEG 681

Query: 406 EDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            DI+ +T  + F     + V+   R   K +   + Y               L + +   
Sbjct: 682 ADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNLGIPRKLA 736

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + FE +   +++   +  +  +    + L            R     +     ++
Sbjct: 737 KQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR---------RRSLPDINSRNFNI 787

Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
            +      +      SA  +  +  + + R                         Y    
Sbjct: 788 RQFAERTAINSPIQGSAADILKIAMINLDR-----------------------VLYKGGY 824

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
            S++                          +         IVL        E P+    +
Sbjct: 825 KSKM--------------------------LLQVHDE---IVL--------EVPNEEIGA 847

Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           +  L    M    S    +PL A+    + +
Sbjct: 848 IKELVTKTMESAIS--LSVPLIADENAGETW 876


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/647 (14%), Positives = 180/647 (27%), Gaps = 119/647 (18%)

Query: 37  WDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
             +      +     A     L ++L+D     V H             G+ +       
Sbjct: 338 VRNNGAAYIELAGLDAAAESVLARWLQDPEEAKVLHEFKSALKALHN-RGLGLEGV-VDD 395

Query: 96  TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           TS+            +       ++   K+    A           S   D   A  +  
Sbjct: 396 TSISGYLIQPDRRSYDLAE---LAQVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQ 452

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
                    +  E      K    L+  E  +  +   +   G  +  D + +    + +
Sbjct: 453 HAAVVHALSKHFEKELAEIKADALLTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTK 512

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHS 268
             +   E         + +      L+  LF   G+      +        +LK +L  +
Sbjct: 513 VIENAQEQAFAAIGHEV-NLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKT 571

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
               L   L+ +R +S  +    + TL ++V+ D R+  T     A  TGR S      Q
Sbjct: 572 GHEFLV-QLMAHRESSKLAQ--MVETLKKSVADDARIHTTYAQNIA-ATGRISSNNPNLQ 627

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEAR 387
           N+P                                VRS  + S G   L+ AD + IE R
Sbjct: 628 NIP------------------------VRSEEGRRVRSIFMVSEGYECLLSADYSQIEMR 663

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           ++A ++G+   I+A+ +GED++    A+ FN    +V+   R+  K M   L Y      
Sbjct: 664 IMAHLSGDQALIQAYKDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMSYGLAYG----- 718

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             +      L++            ++ +    ++   ++DQ         + G       
Sbjct: 719 LTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDGVRDQARVDGYTATIEGR------ 772

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              R     +    +   E    +                                    
Sbjct: 773 ---RRYLPDLTSTNRQAREAAERIA----------------------------------- 794

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
                     +     ++  + +R   G   E   Q      L   M           L 
Sbjct: 795 ---------LNSPIQGSAADIIKRAMLGVSAELASQG-----LKSRML----------LQ 830

Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE+V E       +V  L    M         +PL  +      +
Sbjct: 831 VHDELVLEVAPGEREAVEKLVIEQMGSAAE--LSVPLDVQIGVGSSW 875


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/679 (15%), Positives = 198/679 (29%), Gaps = 152/679 (22%)

Query: 37   WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
            + +E V +   T +    + L  +   E    V +N+   R    +  G ++        
Sbjct: 469  FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELSGT-VQDV 526

Query: 97   SVLARTNGLPSS-LKNAC---LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRA 150
            ++L       +S LK A      L +S      + GK    +A        +        
Sbjct: 527  NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586

Query: 151  NH----------------VQAWQLFGEYCKRDVE-----ATRELFKRLIPLSDGERDLWL 189
                               +      +Y    ++       +  ++R+  L D E  L  
Sbjct: 587  TASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDMELPLSR 646

Query: 190  LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
            L + + D G  +D  L+ +  + ++ E K+ +    +     + +      L+  LF   
Sbjct: 647  LLERMEDTGIAVDEGLLQRFDQELSSEVKRTETAAFEAIGREV-NLSSPKQLQDVLFNQL 705

Query: 250  GIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            G+     ++    T    L    +       + L+  R  S    I  +  L + ++ DG
Sbjct: 706  GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQI--VRNLGDRIAPDG 763

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+  T     A  TGR S      QN+P                                
Sbjct: 764  RIHTTFGQTVA-ATGRLSSLDPNLQNIP------------------------ARTDDGAR 798

Query: 364  VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +R   IA      L+ AD + IE R++A ++G++  I AF +GED++ +  A  F    +
Sbjct: 799  IRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAPE 858

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
             V+  QR   K     L                GL                         
Sbjct: 859  AVTATQRTHVKATSYGL--------------AYGLS------------------------ 880

Query: 483  LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                      A + ++     + + + + ++   V    + +      V           
Sbjct: 881  ------AFGLAGQLRISQGEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMW---- 930

Query: 543  VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                   RR     ++     +     +               +
Sbjct: 931  ----------------------GRRRYLPGLRATNRVVAENARRA---------ALNAPI 959

Query: 603  QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
            Q  + D++ + M            G  I+L +HDE+V E       ++  +    MT   
Sbjct: 960  QGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAMTSVV 1019

Query: 656  SWAKGLPLKAEGYEAKRYR 674
                 +PL+        +R
Sbjct: 1020 E--LRVPLEVSVGVGANWR 1036


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/667 (15%), Positives = 178/667 (26%), Gaps = 141/667 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
              A A        +D T         L  +L D       H +           G  + 
Sbjct: 354 WGVAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAKEASHALA---GRGLD 410

Query: 90  SKRW-ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARF-CKGSIDSPP 144
            +     T + A           L +  +     E            A        D   
Sbjct: 411 LEGVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVDGADEGR 470

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               RA  V+           D  AT  L       SD E  L  +   +   G  ID  
Sbjct: 471 RAAVRAAAVRDLVDVLGGEVADRGATTLL-------SDLELPLQAVLARLERTGIAIDHA 523

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTL 261
            +  L+     + +    D   +    + +      L+  LF    +           T 
Sbjct: 524 YLSGLEREFDGQVQGAAADAYAVIGREV-NLGSPKQLQEVLFDQLRMPKTKRIKTGYTTD 582

Query: 262 KSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            + L+           + L+ +R A        +  L  +V+ DGR+R T Q   A  TG
Sbjct: 583 ANALTDLFARTGHPFLEHLLAHRDAIRLRQT--VEGLLRSVADDGRIRTTFQQTIA-ATG 639

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLV 377
           R S      QN+P                            A   +R   +   G   L+
Sbjct: 640 RLSSADPNLQNIP------------------------IRTDAGRQIRRAFVVGPGYATLL 675

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + IE R++A ++G++  I AF +GED++    ++ F  P D+V+   R+  K M  
Sbjct: 676 TADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSY 735

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            L Y        +      L ++                                     
Sbjct: 736 GLAYG-----LSSYGLSQQLAIEVS----------------------------------- 755

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
                   +   +  +  GV      + +           +                   
Sbjct: 756 ----EAAALMTDYFERFGGVRDYLTGVVDQARATGYTATVL------------------- 792

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   RR    D+  D      A  ++              +Q  + D++   M   
Sbjct: 793 -------GRRRYLPDLTSDNRQRREAAERM---------ALNAPIQGSAADLIKVAMLGV 836

Query: 618 T----KNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN----PSWAKGLPLKAE 666
                + G    ++L VHDE+V E  +     V  L    M       P     +PL   
Sbjct: 837 DGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGSGLPDGPLDVPLDVS 896

Query: 667 GYEAKRY 673
               + +
Sbjct: 897 VGVGESW 903


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/678 (13%), Positives = 183/678 (26%), Gaps = 159/678 (23%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77
             I             AW D+            +     L  +L ++T+        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374

Query: 78  I---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
               +      I +P   +      +R              L  +     +     L  +
Sbjct: 375 KRGKVLLDRKEITLPPATFD-----SR----------LAKYLLSTVEDNSLTTIANLYGQ 419

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------E 184
                 ++      + +  +  ++F  +  R V+   E  + ++   +           E
Sbjct: 420 TSLVPDEAIYGKGAKLDLPE-REIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDME 478

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +   G +++ + +  +Q        +L ++I +L      +      L   
Sbjct: 479 LPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTI 537

Query: 245 LFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           LF   G+             T   +L            IL     +      +  L +A+
Sbjct: 538 LFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAI 597

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DG++         ++TGR S      QN+P                            
Sbjct: 598 LEDGKIHTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLE 632

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S     L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F 
Sbjct: 633 QGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFG 692

Query: 419 TPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
               + V+   R   K +   + Y               L + +        + FE +  
Sbjct: 693 IEKAEDVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPG 747

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            +++   +  +  +    + +     EL           +     ++        +    
Sbjct: 748 IKNYMETIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPI 798

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  V  + + +                                      T  G 
Sbjct: 799 QGSAADILKVAMINLDK------------------------------------ALTEAGL 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
            T  ++Q                    IVL        E P     +V   +   M    
Sbjct: 823 ATRMLLQ-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAI 858

Query: 656 SWAKGLPLKAEGYEAKRY 673
           S    +PL A+  E   +
Sbjct: 859 S--LSVPLIADENEGSTW 874


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/672 (13%), Positives = 180/672 (26%), Gaps = 147/672 (21%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77
             I             AW D+            +     L  +L ++T+        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374

Query: 78  I---LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKAL 131
               +      I +P   +  + +          +SL          S    +   GK  
Sbjct: 375 KRGKVLLDRKEITLPPATF-DSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKG- 432

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLL 190
                         +        A ++       +   T  E  ++L  L D E  L  +
Sbjct: 433 --------AKLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANV 484

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              +   G +++ + +  +Q        +L ++I +L      +      L + LF   G
Sbjct: 485 LAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGIILFEEMG 543

Query: 251 ID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +             T   +L            IL     +      +  L +A+  DG++
Sbjct: 544 LPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKI 603

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                    ++TGR S      QN+P                                +R
Sbjct: 604 HTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLEQGRLIR 638

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DK 423
              + S     L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F     + 
Sbjct: 639 KAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAED 698

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+   R   K +   + Y               L + +        + FE +   +++  
Sbjct: 699 VTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYME 753

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARR 542
            +  +  +    + +     EL           +     ++        +      SA  
Sbjct: 754 TIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPIQGSAAD 804

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
           +  V  + + +                                      T  G  T  ++
Sbjct: 805 ILKVAMINLDK------------------------------------ALTEAGLATRMLL 828

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGL 661
           Q                    IVL        E P     +V   +   M    S    +
Sbjct: 829 Q-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAIS--LSV 862

Query: 662 PLKAEGYEAKRY 673
           PL  +  E   +
Sbjct: 863 PLIVDENEGPTW 874


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 182/656 (27%), Gaps = 130/656 (19%)

Query: 35  YAWDDEPVKLWDRT----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            A  D+               A       +L D T     H + +     + + G ++  
Sbjct: 370 IAAPDDEGGYIALETLTPHDEAALG---AWLADATRPKAVHEAKWAMHGLE-SRGWEL-G 424

Query: 91  KRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                T++ A          +L +  +     E   +   G            D    + 
Sbjct: 425 GLTSDTAIAAYLVRPGQRSFNLDDLSVRYLHRELRVESAAGDD-TQLSLLDDPDDSAAEK 483

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +   ++A  +       D E   ++  +   L + E  L  +   +   G  +D D + 
Sbjct: 484 AQQQILRARAVVDLAAALDEELE-KIESK-PLLEEMELPLLRVLGVMEATGIAVDTDHLE 541

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260
            L    +    +  E       G   +      L++ LF   G+                
Sbjct: 542 SLHSDFSDRI-RAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKTKTGYTTDAAA 600

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           L+++        L    +L    ++   +  +  L +AV+SDGR+  T     A  TGR 
Sbjct: 601 LEALYEKEPHPFL--QYLLEHRDATRLKVT-VEGLLKAVASDGRIHSTFNQTVA-ATGRL 656

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            A   +R   +A  G   L+ A
Sbjct: 657 SSTDPNLQNIP------------------------VRTEAGRQIRHAFVAGEGYETLMTA 692

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++ ++  I+AF  GED++    AKAF  PID+V+ + R   K M   L
Sbjct: 693 DYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAMSYGL 752

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L + +     +  + F  +     +   +  +       + + 
Sbjct: 753 AYG-----LSAFGLAAQLKISRDEAKDQMEAYFARFGGVRDYLQDVVTEATRNEYTETIF 807

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDV 558
           G          R     +    +   E      +      SA  +  V  + + +  R  
Sbjct: 808 GR---------RRYLPDLTSTNRMRRESAERMALNAPIQGSAADIIKVAMINLDKQIR-- 856

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                          +  +    +    
Sbjct: 857 -----------------------------------------------AAGLTSRMLLQVH 869

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                       E+V E        +  L    M         +PL+      + +
Sbjct: 870 D-----------ELVLEVAAGERDELEKLVRDTMGTAAE--LSVPLEVSVGYGRSW 912


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/498 (15%), Positives = 131/498 (26%), Gaps = 107/498 (21%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E  L  +   +   G   D      +   +  + +KL   I +       +      L
Sbjct: 458 KIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYEAAGEEF-NVNSPKQL 516

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF   G+     ++    T   +L     +      IL     S      L  L   
Sbjct: 517 GVILFEKMGMPAGKKTKNGYSTAADVLEMLAKSYPFVKDILEYRTISKLISTYLEALPLL 576

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +    GR+  +      + TGR S      QN+P                          
Sbjct: 577 IRPETGRIHTSFNQTV-TATGRLSSSDPNLQNIP------------------------VR 611

Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +RS  +   G    + +D + +E RVLA ++G++  I+AF N EDI+  T A+ 
Sbjct: 612 TAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRTAAEV 671

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
              P ++V+ EQR+  K +   + Y               L + +          FE + 
Sbjct: 672 LGIPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLANQLGISRGEAGTYIKKYFERYP 726

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              +    M +   E      L G   EL           +     +             
Sbjct: 727 YIHAFMKSMVEDAQESGRAKTLFGRYREL---------PDIRSSNFNRRSFAERTAMNTP 777

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                         +L   +V          +            
Sbjct: 778 IQGTAADI---------------------MKLAMIEVSRRIKEEGYKSRV---------- 806

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
                            +                E+V E       ++ T L   M    
Sbjct: 807 -----------------LLQVHD-----------ELVVEAVSEEKENLKTLLKETMESVV 838

Query: 656 SWAKGLPLKAEGYEAKRY 673
                +PL A+ +E K +
Sbjct: 839 E--LKVPLIADVHEGKNW 854


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 103/684 (15%), Positives = 201/684 (29%), Gaps = 153/684 (22%)

Query: 33   CAYA-WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
             + A + +E V +   T +    + L  +   E    V +N+   R    +  G ++   
Sbjct: 464  VSLALFREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELSGT 522

Query: 92   RWICTSVLARTNGLPSS-LKNAC---LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPY 145
                 ++L       +S LK A      L +S      + GK    +A        +   
Sbjct: 523  -VQDVNLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAA 581

Query: 146  DCTRANH----------------VQAWQLFGEYCKRDVE-----ATRELFKRLIPLSDGE 184
                                    +      +Y    ++       +  ++R+  L D E
Sbjct: 582  GAAAVTASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDME 641

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
              L  L + + D G  +D  L+ +  + ++ E K+ +    +     + +      L+  
Sbjct: 642  LPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDV 700

Query: 245  LFLITGIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEA 298
            LF   G+     ++    T    L    +       + L+  R  S    +  +  L + 
Sbjct: 701  LFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDR 758

Query: 299  VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
            ++SDGR+  T     A  TGR S      QN+P                           
Sbjct: 759  IASDGRIHTTFGQTVA-ATGRLSSLDPNLQNIP------------------------ART 793

Query: 359  LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA      L+ AD + IE R++A ++G++  I AF +GED++ +  A  F
Sbjct: 794  DDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVF 853

Query: 418  NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                + V+  QR   K     L                GL                    
Sbjct: 854  GVAPEAVTATQRTHVKATSYGL--------------AYGLS------------------- 880

Query: 478  AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                           A + ++     + + + + ++   V    + +      V      
Sbjct: 881  -----------AFGLAGQLRISQGEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETM 929

Query: 538  ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                        RR     ++     +     +           
Sbjct: 930  W--------------------------GRRRYLPGLRATNRVVAENARRA---------A 954

Query: 598  TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
                +Q  + D++ + M            G  I+L +HDE+V E       ++  +    
Sbjct: 955  LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEA 1014

Query: 651  MTKNPSWAKGLPLKAEGYEAKRYR 674
            MT        +PL+        +R
Sbjct: 1015 MTSVVE--LRVPLEVSVGVGANWR 1036


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 186/665 (27%), Gaps = 145/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            +   A       V      E  + +   L  +   E +    +N   +        GI 
Sbjct: 328 KLEGLALTQGSG-VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIV 385

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLT-KMEEGKALIA---RFCKGSID 141
           I           +               L     +     +           RF K   +
Sbjct: 386 IREI--------SYDL-------ALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEWGN 430

Query: 142 SPPYDCTRANHVQAW-QLFGEYC--KRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197
           S           + +   F  Y    +D        K L  +  D E  L  +  ++   
Sbjct: 431 SGLPIGRLPEQPEQYFGEFVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERA 490

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D++ +  L+ L   E   L E+I  L+     + +    L   L+   G+  +D +
Sbjct: 491 GVPLDVEELAILEALFETELAVLTEEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKA 549

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
           + T   +L          + +L            +  L + V     R+  +    GA  
Sbjct: 550 KSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-V 608

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKK 375
           TGR +      QN+P                                +R     +     
Sbjct: 609 TGRLACRDPNLQNIP------------------------IRSERGILLRKAFRLSEKNSY 644

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +
Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              +                                                Q    A  
Sbjct: 705 NFGIV--------------------------------------------YGQQAFGLAKV 720

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     + + +A+ +++  +    ++  +  A  ++    +   R+ +          
Sbjct: 721 LKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDS-------WN 773

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                   S R                                   +Q  + +++   M 
Sbjct: 774 EFPGSRAASGRF-----------------------------AVNTRIQGSAAELIKLAML 804

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
           +        +    ++L +HDE++ E P+     +  L    M    +    +P+     
Sbjct: 805 DISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNIL 862

Query: 669 EAKRY 673
             K +
Sbjct: 863 IGKNW 867


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/654 (12%), Positives = 169/654 (25%), Gaps = 156/654 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            + ++ +  +   ++         +   L    V+ + HN    R +F     I+     
Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                +++ +                         GK   +     + +        +  
Sbjct: 384 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 421

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                      +   E    +++R          L  +   +   G  +++  + +L + 
Sbjct: 422 TLIAIHEKLKQRLFQEKLLTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 475

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKS 263
             Q    L+++I  L  G   +      L   LF   G+              +   L++
Sbjct: 476 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEA 534

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +             ILN    S       + L + V   DGR+  +     A+ TGR S 
Sbjct: 535 LEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFS-TTATATGRLSS 590

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                              + +R   IA  G K++ AD +
Sbjct: 591 SNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADYS 626

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A      +AFANG+DI+  T  + F                         
Sbjct: 627 QIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV----------------------- 663

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                                   +         ++ +  +         A +  +    
Sbjct: 664 -----------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                  + + +  +    +                                     +  
Sbjct: 701 AAEYINYYFSCYPEIKAYMEKAVSIARLHGY--------------------------VET 734

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNG 621
              RR    D+     Y+        R             Q  + DI+         +  
Sbjct: 735 LFGRRCFVRDINNTIPYIRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQLK 785

Query: 622 Y-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              I+L VHDE++ E  D     +   +  +M         +PL+ E      +
Sbjct: 786 VGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNW 837


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/803 (11%), Positives = 191/803 (23%), Gaps = 194/803 (24%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA------------ 52
              D E        +           +   +    +  V+  D                  
Sbjct: 432  ACDTE----VANIEAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGGRG 487

Query: 53   MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---- 108
            +  +   +  D ++  V HN  F+  + +   GI +   R   T  LAR           
Sbjct: 488  VLMEFAPFFEDPSIKKVWHNYSFDNHVIENY-GIKVAGFR-ADTMHLARLWDSSRKIDGG 545

Query: 109  ------------LKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                        +      L    +   K   G+  + +           D  +    + 
Sbjct: 546  YSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVRKDGSEGK-VVSIDPVKELQRED 604

Query: 156  WQLFGEYCKRDVEATRELFKRLIPLSD------------GERDLWL--------LDQTIN 195
             +L+  Y   D  +T  L++ L    +               D +         L   + 
Sbjct: 605  RELWICYSSLDSMSTLRLYESLKRKLETRRWVLDGCPRGTMYDFYEQYWCPFGALLVKME 664

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246
              G  +D   + ++++    ER+   +   K       D    +      +R  LF    
Sbjct: 665  TEGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIE 724

Query: 247  --LITGIDLV------------------DMSE-------GTLKSILSHSNIT--QLAKDL 277
                +G                        S+         ++ + +         +   
Sbjct: 725  NRHKSGETWPQSKTFKVLNEENVATEGKKTSKYRTIKLCSIVEDLKTDMFTPSGWPSASG 784

Query: 278  ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR------------------ 319
               R  +       + T+ +    D    G+    G S  G                   
Sbjct: 785  DALRSLAGKIPTEYIYTMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAI 844

Query: 320  -WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC--------------- 363
                 +    +L           +   A  R     +                       
Sbjct: 845  AALCEICSIDSLISNFILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEK 904

Query: 364  ----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +      + AF  G D +  T    +  
Sbjct: 905  DRYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQH 964

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              D V +                   KV        G +         +        +  
Sbjct: 965  IRDAVHE------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKML 1006

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  +         +   K+         K W    + VL   K   +      +    + 
Sbjct: 1007 NFSIAYGKTALGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKSQKKLAREKCEVYTLL- 1065

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                      R   + ++     +       + R          
Sbjct: 1066 -------------------------GRSRHFPNL---TQFGPGQRGHIERAAINAP---- 1093

Query: 600  NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
              VQ  + D+    M    +       G+ ++L VHDE++ E P         +    M+
Sbjct: 1094 --VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMS 1151

Query: 653  KNP--SWAKGLPLKAEGYEAKRY 673
            K    +    + L  +   AK +
Sbjct: 1152 KPFHGTNILKVDLAVDAKCAKSW 1174


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/678 (14%), Positives = 173/678 (25%), Gaps = 145/678 (21%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQSAMPSD-LLQYLRD 63
             L K   +     AV    A   D E              D     A     L  +L D
Sbjct: 324 NWLKKNAAYQEGRDAVAEALAVDIDGETLGLLSAENKGLKLDLAALDAKDEQVLRTWLAD 383

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                  H+S        +  G  +       TSV A                     L 
Sbjct: 384 RGAPKWFHDSKQSFHAL-RQQGFALDGVE-HDTSVAAYL---------------VRPDLR 426

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G  L     +   ++           +   +  +      E T      L      
Sbjct: 427 SWSLGDVLQRHAGRDLPENSGSLERAQAVRELVGIMNQ------ELTDAGQAELY--FSM 478

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +  RG  +D   + +L      +         +L +    +      L+ 
Sbjct: 479 EVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQK 538

Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSE 297
            LF   G+     ++    T  + L              L+ +R      +   ++ L  
Sbjct: 539 VLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKST--IDGLIN 596

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           A+  DGR+R T    GA  TGR S      QN+P                          
Sbjct: 597 AIDGDGRIRTTFNQKGA-ATGRLSSSEPNLQNIP------------------------VR 631

Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
             A   +RS      G   L+ AD + IE RV+A ++ +   I+A+  GED++    ++ 
Sbjct: 632 TEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYVGSRV 691

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F+ P+D+V+ E R   K +   L Y               L +          + F+ + 
Sbjct: 692 FDVPVDEVTPELRRRVKALSYGLVYG-----LSAFGLSQQLGISPGEAKGIMENYFDRFG 746

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
             + +   + +   E    + L G          R     +    +   E          
Sbjct: 747 GVKRYLDKVVEAAKETGYTETLYGR---------RRYLPELASSNRVARENAERAALNAP 797

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                   +L   R L  +++K                      
Sbjct: 798 IQGTAADIIKL------------AMLRVDRALRNANLKSRV------------------- 826

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNP 655
                            +                E+V E        +  L    M    
Sbjct: 827 -----------------LLQVHD-----------ELVLEIAPGELEQIQQLLEENMDSAA 858

Query: 656 SWAKGLPLKAEGYEAKRY 673
           S    +PL       + +
Sbjct: 859 S--LRVPLDVSAGHGENW 874


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/676 (13%), Positives = 170/676 (25%), Gaps = 129/676 (19%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
           RS + +   GV+       + L A A     V+       SA  +++L  L       V 
Sbjct: 330 RSAERIAVAGVFEGTAPF-LNLVALALSYGDVRGV-LHASSAHFAEVLSIL--SERPVVL 385

Query: 71  HNSLFERILFKKTL--GIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKM 125
            ++        +    G+ +        ++            SL  A  A    E     
Sbjct: 386 WDAK-------RYAQAGVTL-GTEVFDFALADYLLRPEERQRSLDRAASAY-LDELSAPQ 436

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 ++       +  P    +    +       Y             +L    + E 
Sbjct: 437 TAEDRTLSAAYAHLANGAPLHNEQTAFYEVILAARLYAPTSAALADAKLTKLY--GEIEL 494

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            L  +   +   G  ++   +++      +   ++++DI  L      +      L   L
Sbjct: 495 PLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGTEF-NISSPKQLGEVL 553

Query: 246 FLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           F   G+             T   +L          D +L     S      L  +   + 
Sbjct: 554 FDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGALIR 613

Query: 301 SD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            D GR+  +      + TGR S      QN+P                            
Sbjct: 614 PDTGRVHTSFNQTV-TATGRLSSSDPNLQNIP------------------------VRTE 648

Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               VR+      G   L+ AD + IE R+LA ++G++  I AF  G+DI+  T ++ F 
Sbjct: 649 EGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFG 708

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            P+ +V+  QR   K +   + Y               L + +          FE +   
Sbjct: 709 VPLAEVTSAQRRSAKAVNFGIVYG-----LSDYGLSQDLGIPRKEAAGYIERYFERYHGV 763

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            +    +            L G          R     +             +       
Sbjct: 764 RAFLDRVVADAHTNGFVTTLYGR---------RRALPAINSRNFMQRSNAERMAMNTPIQ 814

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                                       ++               +              
Sbjct: 815 GTAADLI---------------------KIAMIRADAALRAAGVKSRI------------ 841

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
                          +                E+V E  +     V  L  + M+     
Sbjct: 842 ---------------LLQVHD-----------ELVLEVVNDEIAQVTELLTAAMSGAAQL 875

Query: 658 AKGLPLKAEGYEAKRY 673
           A  +PL  + +  K +
Sbjct: 876 A--VPLAVDVHTGKNW 889


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 166/644 (25%), Gaps = 131/644 (20%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D T            ++ D     V HN+     +F +  G  +       T++ A  
Sbjct: 382 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 439

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L+              +A       ++          +     
Sbjct: 440 VKPGRRSFALDALSVEYLHRELVPA---AADGQLAFGTDEHAEADALMAQARAVLDLGDA 496

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    +               L D E     L   +   G   D   +  ++ L A   +
Sbjct: 497 FTARLEEVGATEL--------LHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQ 548

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271
           +  ++          +      L+   F    +                L  +   +   
Sbjct: 549 QAVKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHE 607

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                L  +R  +   +   +  L + V++DGR+  T     A  TGR S      QN+P
Sbjct: 608 LPVIML-RHREQARLRST--VEGLIKTVAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP 663

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390
                                           +R   +   G + L+ AD + IE RV+A
Sbjct: 664 ------------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 699

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L Y         
Sbjct: 700 HLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYG-----LSA 754

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L+++         + FE +     +   + D+         ++G          
Sbjct: 755 FGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGR--------- 805

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +    +   E    +            A++ ++ M R  R +     SSR L  
Sbjct: 806 RRYLPDLNSDNRQRREAAERMALNAPIQGTA--ADIVKIAMLRVDRALREAGLSSRLL-- 861

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                                                       
Sbjct: 862 --------------------------------------------LQVHDE---------- 867

Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            IV E        V T+    M+     +   PL         +
Sbjct: 868 -IVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 908


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/665 (13%), Positives = 184/665 (27%), Gaps = 145/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            +   A       V      E  + +   L  +   E +    +N   +        GI 
Sbjct: 328 KLEGLALTQGSG-VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIV 385

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLT-KMEEGKALIA---RFCKGSID 141
           I           +               L     +     +           RF K   +
Sbjct: 386 IREI--------SYDL-------ALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEWGN 430

Query: 142 SPPYDCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197
                       + +    +      +D        K L  +  D E  L  +  ++   
Sbjct: 431 LGLPIGRLPEQPEQYFGELVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLVSMERA 490

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D++ +  L+ L   E   L E+I  L+     + +    L   L+   G+  +D +
Sbjct: 491 GVPLDVEELAILEALFETELAVLTEEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKA 549

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
           + T   +L          + +L            +  L + V     R+  +    G + 
Sbjct: 550 KSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTG-TV 608

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKK 375
           TGR +      QN+P                                +R     +     
Sbjct: 609 TGRLACRDPNLQNIP------------------------IRSERGILLRKAFRLSEKNSY 644

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R LA ++ +     AF +GEDI+  T ++ F+ P+++VSKEQR   K +
Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              +                                                Q    A  
Sbjct: 705 NFGIV--------------------------------------------YGQQAFGLAKV 720

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     + + +A+ +++  +    ++  +  A  ++    +   R+ +          
Sbjct: 721 LKISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDS-------WN 773

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                   S R                                   +Q  + +++   M 
Sbjct: 774 EFPGSRAASGRF-----------------------------AVNTRIQGSAAELIKLAML 804

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
           +        +    ++L +HDE++ E P+     +  L    M    +    +P+     
Sbjct: 805 DISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIAVNIL 862

Query: 669 EAKRY 673
             K +
Sbjct: 863 IGKNW 867


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/620 (15%), Positives = 178/620 (28%), Gaps = 138/620 (22%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARF 135
              +LG+D+  K    T +                     L+      K EE    +   
Sbjct: 472 LFASLGVDL-PKPLFDTKLAGYLVQPDFHADTLEQAAARFLDI-HVEEKTEEATQGLLDL 529

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
             G+      + T      A  +         +  +     L  L   E  +  +   + 
Sbjct: 530 DDGADADADGNQTSTLLQHAAIIAELARALAPQIDQREQFGL--LQRMELPVSHVLYGME 587

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
            +G ++D+  +  +++  A + ++  ++I     G   + +    L   LF   G+    
Sbjct: 588 SQGAKVDMQRLTSMRDTFAADARQA-QEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTK 646

Query: 256 MSEG----TLKSILSHSNITQ--------LAKDLILNRLASSGSAILKLNTLSEAVSS-D 302
            ++     T    L     T             L+ +R  +    I  + TL +A +  D
Sbjct: 647 RTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHRETNKLKQI--VATLIDATNPAD 704

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            R+  T +   A  TGR S      QN+P                            A  
Sbjct: 705 ERIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAAGR 739

Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +RS  +   G + L+  D + +E R++A ++G++  I+AF +G D +    +     P+
Sbjct: 740 EIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVPV 799

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D+++ +QR+  K M   L Y              GL                        
Sbjct: 800 DQITPDQRSHVKAMSYGLAYGLS---------SYGL------------------------ 826

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                      A + K+  +  E +K  + A    V    +                   
Sbjct: 827 -----------AQQLKIRPSEAEALKAKYFATFGKVHDFLESCVSEARKRGYTETMF--- 872

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                   RR  +  +K        A  +               
Sbjct: 873 -----------------------GRRRYFPALKSTNRAARDAAERAA---------LNAP 900

Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN 654
           +Q  + DI+   M  A +          I+L +HDE+V E        V  L    M   
Sbjct: 901 IQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVRDAMENA 960

Query: 655 PSWAKGLPLKAEGYEAKRYR 674
                 +PL         ++
Sbjct: 961 VH--LDVPLDVSTGVGADWQ 978


>gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 341

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 33/315 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + ++ ID+ET S   + K GV+ YAE     I L A + D   V ++D      +P ++L
Sbjct: 4   IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100
             +  + V+  A N+ FERI     +                  G  +    W CT + +
Sbjct: 64  DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAW 156
              GLP SL+     L   +   KM+EGK LI  F   CK +  +         H  + W
Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQ--KMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKW 181

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
            +F  Y KRDVE    + ++L   P+ D   + +LLDQ INDRG  +DL +V        
Sbjct: 182 TVFKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDE 241

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           + +  + +++  L    I +      ++ +L    GI++  + +  +  ++  +   +  
Sbjct: 242 RSKATITDEM--LGLTDIDNPNSVSQMKSWLSD-QGIEVESLGKKVVAEMIKDA--PEDL 296

Query: 275 KDLILNRLASSGSAI 289
             ++  R   + S++
Sbjct: 297 AQVLSLRQQLAKSSV 311


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 192/656 (29%), Gaps = 129/656 (19%)

Query: 30  ITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           +   A A D++ V   D    Q  + + L  + + +      +N   +    K   GI I
Sbjct: 328 LMGVALACDEQ-VYYVDIEHAQDDVITPLRDFFKRKDTEFYGYNIKRDNHALKNA-GIHI 385

Query: 89  PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            +      ++        +  S +   +     E   K   GK                 
Sbjct: 386 HNITL-DLALAEHLINGGAKISYQTLLVDHGLVESAGKY--GKEWGQLSLPILKSPAKPA 442

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                 V       +    +++  + L      +   E  L  +  TI   G  +D++ +
Sbjct: 443 EYFGEFVSHLPKIKKSLLEELKV-KGLEDLFFNM---EMPLEKVLFTIERNGMPLDVEDL 498

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +L+  +++E   L +DI     G   + +    L   L+   G+  +D +  T   +L+
Sbjct: 499 QELERTLSEELAILTDDIY-TVAGTSFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLA 557

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
                    + IL   A        +  L   +     R+  T    G + TGR +    
Sbjct: 558 ALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDP 616

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGI 384
             QN+P                                +R            + AD + I
Sbjct: 617 NLQNIP------------------------IRSERGRLLRKAFCDTRQNNYFLSADYSQI 652

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R LA ++ ++    AFA+ ED++  T ++ F+ P+++V+K+QR   K +   +     
Sbjct: 653 ELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII---- 708

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                                                      Q    +   K+  +  +
Sbjct: 709 ----------------------------------------YGQQAYGLSKILKISVSEAQ 728

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +  A+  ++  V +   +                                 ++ +    
Sbjct: 729 KLIDAYFDRYPAVARFINETINEA--------------------------CENLRVKTLL 762

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
            R         +    N       R  + G       +Q  + +++   M          
Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLAAALEKR 812

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L +HDE++ E P+     V TL   +M         +PL       K +
Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/654 (13%), Positives = 164/654 (25%), Gaps = 149/654 (22%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID--IP 89
             A A++          +   + + + Q      +  +      +     ++      I 
Sbjct: 411 GIAVAFNGNE--YLYTGKPEDLAAHMAQT---GAISRI---IAPDVKALYRSHTSWRAIE 462

Query: 90  SKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
             RW    + A          S  +                                   
Sbjct: 463 VHRWFDLGLAAYLLNPEERDYSWTSLARR------------------------------A 492

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                  Q          +D  A  E       + + E  L  +   +  RG RI+    
Sbjct: 493 EEFGIDAQTPATLALTLAQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEF 552

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262
                 + +E  +L +++  +  G   + R +  L   LF   G+     ++     T +
Sbjct: 553 SGFLAEVQKELDRLTQEVYAVAGGQF-NIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQ 611

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           ++L          D IL            L  L      + R+  T     A+ TGR S 
Sbjct: 612 AVLEKLAGKHPVIDTILEYRKLEKLRSTYLEPLPRLAQENDRIHTTFNQL-ATATGRLSS 670

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                          G     +R C  A+ G KLV AD +
Sbjct: 671 SQPNLQNIP------------------------VRGPMGQRMRRCFTAAPGNKLVAADYS 706

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RVLA ++ +   I++F   EDI+  T    ++     V+ +QR   K +   L Y 
Sbjct: 707 QIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYG 766

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G +          L +            F      +  +  ++    E      L G  
Sbjct: 767 MGPQKLAQE-----LKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAREHGFVTTLAGR- 820

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R     +      L               +                      
Sbjct: 821 --------RRLLPEIHSDNNQLRSQARRQAINTVVQGS---------------------- 850

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
                                 + +++         E + Q  +  I             
Sbjct: 851 ---------------------AADIIKIAMLKAAADETLQQLNAALI-----LQVHDE-- 882

Query: 623 DIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSW--AKGLPLKAEGYEAKRY 673
            ++L        E P      +   L  +M+       A  +PL  +      +
Sbjct: 883 -LLL--------EAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNW 927


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/676 (12%), Positives = 182/676 (26%), Gaps = 152/676 (22%)

Query: 27  QAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-- 76
              I            +AW  +                  ++L  +T + V     ++  
Sbjct: 325 HFEIFGDNYHTEPIIGFAWGTKGQLYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFK 378

Query: 77  -RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
              +    LGI + +  +      +R              L  +    ++    +L ++ 
Sbjct: 379 RAKVLLSHLGITLQNPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQI 423

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERD 186
                +       +    +   L      +               +   +L  L D E+ 
Sbjct: 424 ALPLDEVVYGKGVKRAIPERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQP 483

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +   G +++   +  +Q       ++L ++I +L      +      L + LF
Sbjct: 484 LAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILF 542

Query: 247 LITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
               +             T   +L            IL     +      +  L + +  
Sbjct: 543 EKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILE 602

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DG++         ++TGR S      QN+P                              
Sbjct: 603 DGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQG 637

Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +       L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN  
Sbjct: 638 RLIRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIE 697

Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             + V+   R   K +   + Y               L + +        + FE +   +
Sbjct: 698 KPEDVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIK 752

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSI 538
            +   +  +  +    + L            R +   +     ++        +      
Sbjct: 753 DYMERVVREARDKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQG 803

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
           SA  +  +  + +                                  Q +    Y  K+ 
Sbjct: 804 SAADILKIAMIHLD---------------------------------QALEAGAYKTKM- 829

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
                          +         IVL V        P     ++  L    M      
Sbjct: 830 ---------------LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIEL 863

Query: 658 AKGLPLKAEGYEAKRY 673
           A  +PL+A+  E K +
Sbjct: 864 A--VPLEADENEGKTW 877


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 166/644 (25%), Gaps = 131/644 (20%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D T            ++ D     V HN+     +F +  G  +       T++ A  
Sbjct: 353 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 410

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L+              +A       ++          +     
Sbjct: 411 VKPGRRSFALDALSVEYLHRELVPA---AADGQLAFGTDEHAEADALMAQARAVLDLGDA 467

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    +               L D E     L   +   G   D   +  ++ L A   +
Sbjct: 468 FTARLEEVGATEL--------LHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQ 519

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271
           +  ++          +      L+   F    +                L  +   +   
Sbjct: 520 QAVKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHE 578

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                L  +R  +   +   +  L + V++DGR+  T     A  TGR S      QN+P
Sbjct: 579 LPVIML-RHREQARLRST--VEGLIKTVAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP 634

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390
                                           +R   +   G + L+ AD + IE RV+A
Sbjct: 635 ------------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 670

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L Y         
Sbjct: 671 HLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYG-----LSA 725

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L+++         + FE +     +   + D+         ++G          
Sbjct: 726 FGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGR--------- 776

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +    +   E    +            A++ ++ M R  R +     SSR L  
Sbjct: 777 RRYLPDLNSDNRQRREAAERMALNAPIQGTA--ADIVKIAMLRVDRALREAGLSSRLL-- 832

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                                                       
Sbjct: 833 --------------------------------------------LQVHDE---------- 838

Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            IV E        V T+    M+     +   PL         +
Sbjct: 839 -IVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 879


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 166/644 (25%), Gaps = 131/644 (20%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D T            ++ D     V HN+     +F +  G  +       T++ A  
Sbjct: 374 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 431

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L+              +A       ++          +     
Sbjct: 432 VKPGRRSFALDALSVEYLHRELVPA---AADGQLAFGTDEHAEADALMAQARAVLDLGDA 488

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    +               L D E     L   +   G   D   +  ++ L A   +
Sbjct: 489 FTARLEEVGATEL--------LHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQ 540

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271
           +  ++          +      L+   F    +                L  +   +   
Sbjct: 541 QAVKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHE 599

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                L  +R  +   +   +  L + V++DGR+  T     A  TGR S      QN+P
Sbjct: 600 LPVIML-RHREQARLRST--VEGLIKTVAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP 655

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390
                                           +R   +   G + L+ AD + IE RV+A
Sbjct: 656 ------------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 691

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L Y         
Sbjct: 692 HLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYG-----LSA 746

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L+++         + FE +     +   + D+         ++G          
Sbjct: 747 FGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGR--------- 797

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R     +    +   E    +            A++ ++ M R  R +     SSR L  
Sbjct: 798 RRYLPDLNSDNRQRREAAERMALNAPIQGTA--ADIVKIAMLRVDRALREAGLSSRLL-- 853

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
                                                                       
Sbjct: 854 --------------------------------------------LQVHDE---------- 859

Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            IV E        V T+    M+     +   PL         +
Sbjct: 860 -IVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 900


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/667 (13%), Positives = 165/667 (24%), Gaps = 151/667 (22%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW +E                    L  + V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L     
Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187
             + +       +    +   L     K+           L  L          D E  L
Sbjct: 423 LETDEVVYGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G ++D   + ++         KL +DI ++      +      L + LF 
Sbjct: 483 ANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFE 541

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             G+             T   +L            IL     +      +  L + +  D
Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 602 GKIHTRYMQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
            +R   + S     L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F    
Sbjct: 637 LIRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L + +        + FE +   ++
Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYIDTYFERYPGIKA 751

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +   +  +  +      L     EL           +     ++               +
Sbjct: 752 YMDNVVREAKDKGYVSTLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                     ++   ++          T                
Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
                        +         IVL V        P     ++  L    M      A 
Sbjct: 827 ------------MLLQVHDE---IVLEV--------PSDELLAMKALVKETMESAVELA- 862

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 863 -VPLIAD 868


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/659 (13%), Positives = 177/659 (26%), Gaps = 147/659 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +         +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTVLPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +    +  QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERENLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L + + +      + FE +   +++   +  + 
Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREA 761

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548
            +    + +            R     +     ++        +      SA  +  V  
Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + +              R L   + K                                  
Sbjct: 813 INLD-------------RALTEKNFKS--------------------------------- 826

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                +         IVL V        P     +V  L    M      A  +PL A+
Sbjct: 827 ---RMLLQVHDE---IVLEV--------PADELTAVRQLVKETMEAAIKLA--VPLVAD 869


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 97/671 (14%), Positives = 178/671 (26%), Gaps = 144/671 (21%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           L + + D     + D T    +P D   L + L D     +  ++           G+ +
Sbjct: 387 LVSLS-DGSRAVVVDLT--EILPEDEAALARLLADVERPKLVADAKGSWHALS-ARGLTL 442

Query: 89  PSKRWICTSVLARTNGL---PSSLKNACLA-LNFS-------EHLTKMEEGKALIARFCK 137
                   S+             +       L                  G++  A   +
Sbjct: 443 DGV-VADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAAVNEGGAGGDGGSGESQSAFDLE 501

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
                       A+  +A  L       D +        L   +D E  +      + D 
Sbjct: 502 ALTSEAVPASHLASAGRAAALLPLQVVLDEQMVARDALGLF--TDLEMPVAATLTVMEDA 559

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D  ++   Q  +        E         + +      L+  LF    +     +
Sbjct: 560 GIAVDDAVLQIRQTELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELKMPKTRKT 618

Query: 258 EG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
           +    T    L+           + L+ +R A        +  L +A+  DGR+  T Q 
Sbjct: 619 KTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQPDGRIHTTFQQ 676

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P                                +R      
Sbjct: 677 TIA-ATGRLSSTDPNLQNIP------------------------ARHEEGMRIREAFTVG 711

Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G   L+ AD + IE R++A ++ +   I AF +GED++    A      ++ V+ +QR+
Sbjct: 712 EGYECLMTADYSQIEMRIMAHLSADQALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRS 771

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K M   L                GL     ++ +   +                    
Sbjct: 772 HVKAMSYGL--------------AYGLSTFGLARQLGIDNA------------------- 798

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                          ++ A+ A+   V    + + E                        
Sbjct: 799 -----------DAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMF------------ 835

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                          RR    D+  D         +               +Q  + DI+
Sbjct: 836 --------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQGSAADIV 872

Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPL 663
            + M +             I+L +HDE++ E       +V   L   M         +PL
Sbjct: 873 KKAMIDVDSALTERALASRILLQIHDELLIEVAPGEAEAVENLLKEQMGGAAE--LSVPL 930

Query: 664 KAEGYEAKRYR 674
                  + +R
Sbjct: 931 DVAVGRGRTWR 941


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L ++L+ E    + H    E +     + +D+    
Sbjct: 399 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 515

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 570 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940

Query: 669 EAKRYR 674
               ++
Sbjct: 941 IGSDWQ 946


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L ++L+ E    + H    E +     + +D+    
Sbjct: 404 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 520

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 575 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 787 SYGLAYG-----LSTYGL---------------------------------------AQQ 802

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 803 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 845

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 846 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 887

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 888 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 945

Query: 669 EAKRYR 674
               ++
Sbjct: 946 IGSDWQ 951


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/678 (13%), Positives = 182/678 (26%), Gaps = 159/678 (23%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77
             I             AW D+            +     L  +L  +T+        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLESQTIK------TYDF 374

Query: 78  I---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
               +      I +P   +      +R              L  +     +     L  +
Sbjct: 375 KRGKVLLDRKEIKLPPATFD-----SR----------LAKYLLSTVEDNSLTTIANLYGQ 419

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------E 184
                 ++      + +  +  ++F  +  R V+   E  + ++   +           E
Sbjct: 420 TSLVPDEAVYGKGAKLDLPE-REIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDME 478

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +   G +++ + +  +Q        +L ++I +L      +      L   
Sbjct: 479 LPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTI 537

Query: 245 LFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           LF   G+             T   +L            IL     +      +  L +A+
Sbjct: 538 LFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAI 597

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DG++         ++TGR S      QN+P                            
Sbjct: 598 LEDGKIHTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLE 632

Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +R   + S     L+ +D + IE RVLA I+ +   I+AF  G DI+ +T  + F 
Sbjct: 633 QGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFG 692

Query: 419 TPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
               + V+   R   K +   + Y               L + +        + FE +  
Sbjct: 693 IEKAEYVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPG 747

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536
            +++   +  +  +    + +     EL           +     ++        +    
Sbjct: 748 IKNYMETIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPI 798

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             SA  +  V  + + +                                      T  G 
Sbjct: 799 QGSAADILKVAMINLDK------------------------------------ALTEAGL 822

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
            T  ++Q                    IVL        E P     +V   +   M    
Sbjct: 823 ATRMLLQ-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAI 858

Query: 656 SWAKGLPLKAEGYEAKRY 673
           S    +PL A+  E   +
Sbjct: 859 S--LSVPLIADENEGSTW 874


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L ++L+ E    + H    E +     + +D+    
Sbjct: 399 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 515

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 570 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940

Query: 669 EAKRYR 674
               ++
Sbjct: 941 IGSDWQ 946


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 174/658 (26%), Gaps = 145/658 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85
            I   A+       +    +    +   L Q    +T +       ++     +     G
Sbjct: 337 EIVGLAW----GDSRQIYVSTSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           I++P+  +                      L  +    ++     L  +    + D    
Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432

Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196
              +       QLF    ++                   +L  L + E+ L  +   +  
Sbjct: 433 KGAKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+     
Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL     S      +  L EA+++DG++      
Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L + + +      + FE +   +++   +  + 
Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREA 761

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            +    + +            R     +     ++               +         
Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADI----- 807

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            ++   ++    +  N  +                         
Sbjct: 808 ----------------LKVAMINLDRALTEKNFKSR------------------------ 827

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
               +         IVL V        P     +V  L    M      A  +PL A+
Sbjct: 828 ---MLLQVHDE---IVLEV--------PADELTAVRQLVKETMEAAIKLA--VPLVAD 869


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 192/697 (27%), Gaps = 158/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQY 60
            +++D E      +       Y     + L       E + + D    E+  +   L + 
Sbjct: 23  YVYLDTE----VAVKDFEKVDYFND-KVRLIQIGTQ-EDIFVIDAFKVERDTLKEFLKEV 76

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLA 115
           L  + +  V HN  F+          D+  K    T + ++           SL    + 
Sbjct: 77  LESKGI--VGHNLKFDLKFLA--TNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAVAVR 132

Query: 116 LNFSEHLTKMEEG--------KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L   E     +          K  I    K           +   +   Q   +      
Sbjct: 133 LTDEEVDKTYQTSPWWVENLTKEQIEYSAKDIEVLRSIFREQVVRLNEEQTHLKSSGE-- 190

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T ++F  + P++  E        +I   G  ID   +  L +      + L  +  + 
Sbjct: 191 --TYKVFGVVNPVAALEMAFLPCLVSIELSGIPIDEKQLSNLIKNSKTTFQNLYIEFKRK 248

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                        +  +L    G+ L    +    +    L         K L+  R   
Sbjct: 249 YYID---PFSPQQVANFLTKKLGLKLPKTEKGSFSSQDVHLKPYEDKPEVKTLLSIRYEK 305

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 KL  LS+ V  + R+ G  +  GAS TGR S      QN+P+            
Sbjct: 306 KTL--DKLEELSKYV-KNSRVYGEFKQIGAS-TGRMSSYKPNLQNIPKN----------- 350

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              ++S   A +G   ++AD + IE R+ A    +   IKAF  
Sbjct: 351 -------------------LKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQE 391

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            +D++  T +        +++KE+R + K +   L Y    K     A +          
Sbjct: 392 KKDLHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNN--------- 442

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +  +  +   + +   +    +  +++
Sbjct: 443 -----------------------------YDIDITLSQAKTFHENFFNFYPKFKEWHENV 473

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                                          + + +     R+L                
Sbjct: 474 KNYLEK------------------------HKFIQVETLLGRKL---------------- 493

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTP 640
                            +Q    D+L   +    K        +V  VHDEIV E     
Sbjct: 494 -----IAYKFTDAVNYPIQGSGSDLLKMAVVLFYKSLLDLDAKVVNLVHDEIVVEVKQED 548

Query: 641 YFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYRK 675
              V  + S  M K   +    +P++ E   +K + K
Sbjct: 549 VDKVQEILSQSMEKAGRYLLKEVPVEFEINVSKSWSK 585


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 86/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKTL 84
           I   A+    +       +  +A+       ++L  +T + V     ++     +    L
Sbjct: 338 IIGFAWGTKGQ----LYASTDTALLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHL 387

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
            I +    +      +R              L  +    ++    +L ++      +   
Sbjct: 388 DITLQKPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQIALPLDEVVY 432

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIN 195
               +    +   L     ++               +   +L  L D E+ L  +   + 
Sbjct: 433 GKGAKKAIPEKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKME 492

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G +++   +  +Q       ++L ++I +L      +      L + LF   G+    
Sbjct: 493 IAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLGLPLEY 551

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL     +      +  L + +  DG++     
Sbjct: 552 TKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYV 611

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 612 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 646

Query: 371 SN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN    + V+   
Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPND 706

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   + +   +  +
Sbjct: 707 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVRE 761

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L            R +   +     ++               +        
Sbjct: 762 ARDKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQGSA------- 805

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                                          +      L R   Y  K+           
Sbjct: 806 ------------------------ADILKIAMIHLDQALERGA-YKTKM----------- 829

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667
                +         IVL V        P     ++  L    M      A  +PL+A+ 
Sbjct: 830 -----LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELA--VPLEADE 871

Query: 668 YEAKRY 673
            E K +
Sbjct: 872 NEGKTW 877


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 84/659 (12%), Positives = 173/659 (26%), Gaps = 147/659 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERI---LFKKTL 84
            I   A+       +         +   L Q      +  +A     ++     +     
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQDF----LTKIA--LKTYDLKRTKVLLSHY 386

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           GI++P   +                      L  +    ++     L  +    + D   
Sbjct: 387 GIELPVASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVY 431

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIN 195
               +    +  QLF    ++                   +L  L + E+ L  +   + 
Sbjct: 432 GKGAKRALPEKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKME 491

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G +++ + +  +Q    +  + L ++I  L      +      L   LF   G+    
Sbjct: 492 IAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEY 550

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL     S      +  L EA+++DG++     
Sbjct: 551 TKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV 610

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 611 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 645

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  I AF +GEDI+  T  + F     + V+   
Sbjct: 646 EWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPND 705

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + + +      + FE +   +++   +  +
Sbjct: 706 RRNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVRE 760

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + +            R     +     ++               +        
Sbjct: 761 ARDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADI---- 807

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++   ++    +  N  +                        
Sbjct: 808 -----------------LKVAMINLDRALTEKNFKSR----------------------- 827

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                +         IVL V        P     +V  L    M      A  +PL A+
Sbjct: 828 ----MLLQVHDE---IVLEV--------PADELTAVRQLVKETMEAAIKLA--VPLVAD 869


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L ++L+ E    + H    E +     + +D+    
Sbjct: 399 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 515

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 570 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940

Query: 669 EAKRYR 674
               ++
Sbjct: 941 IGSDWQ 946


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/636 (14%), Positives = 175/636 (27%), Gaps = 136/636 (21%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLA 115
            +L D  V   AH+         ++ G  +       T++ A           L +  L 
Sbjct: 12  DWLADADVPKAAHDVKAVLHAL-RSRGWSLAGLT-SDTALAAYLARPGQRTFDLADLALR 69

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
               E  T+       ++                     A     +    D E       
Sbjct: 70  YLRRELRTEEPA-DGQLSLLGGADEADAQAAQQEMLAASAIAELAD--ALDTELAERGGT 126

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L+     E  L  +       G  +D + +  L+     + ++  ++  ++    I + 
Sbjct: 127 ELLADL--ELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIGKEI-NL 183

Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAIL 290
                L++ LF    +     ++    T    L              +L    ++   + 
Sbjct: 184 GSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHRDATRLKVT 243

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++ L ++V+ DGR+  T     A  TGR S      QN+P                   
Sbjct: 244 -VDGLIKSVADDGRIHTTYSQTIA-ATGRLSSTDPNLQNVP------------------- 282

Query: 351 ETIADPLGLASDCVRSCIIASNG------KKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                    A   +R   +   G       +L+ AD + IE R++A ++ ++  I+AF +
Sbjct: 283 -----IRTAAGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRS 337

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
             D +  T A+ F      VS EQRA  K M   L                GL       
Sbjct: 338 QHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGL--------------AYGLS------ 377

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                       + + ++     + +   + A   GV      +
Sbjct: 378 ------------------------AYGLSGQLRISTDEAKGLMDDYFAGFGGVRDYLAGV 413

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            +           +                           RR    D+  D        
Sbjct: 414 VDQARKDGYTATIL--------------------------GRRRYLPDLTSDNRQRREMA 447

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638
            ++              +Q  + DI+   M    +          ++L VHDE+V E  D
Sbjct: 448 ERM---------ALNAPIQGSAADIIKVAMLGVRRALSAEGLRSRMLLQVHDELVLEVAD 498

Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               +   L    M         +PL+      + +
Sbjct: 499 GERETCEALVRREMAAAAD--LSVPLEVSVGYGRSW 532


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 190/663 (28%), Gaps = 145/663 (21%)

Query: 1    MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLL 58
            +    +DIET         G+  + E   I L   A ++ PV ++D     +  +   L 
Sbjct: 1464 IKYCGLDIETT--------GLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLR 1513

Query: 59   QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            + L ++ ++ +  N  F+          +   +    T + ++      ++         
Sbjct: 1514 KVLENKNIIKIIQNGKFDAKFLLHN---NFKIENIFDTYIASKLLDKNKNM----YGFKL 1566

Query: 119  SEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +  + K          +    +      +        +  L   Y K   E      + L
Sbjct: 1567 NNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEE---IKKENL 1623

Query: 178  IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
              ++D E    L    +   G ++DL+ + K    I  E     +++ K       +   
Sbjct: 1624 HIVNDIENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNS 1683

Query: 238  TYALRMYLFLITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               +   L      D+   + E T  S L +    +    L   R             L 
Sbjct: 1684 QQQVLKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRR-LYKLYSAFYLKLP 1742

Query: 297  EAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
              ++    ++  T      + +GR+S      Q +PRQ                      
Sbjct: 1743 LHINTKTNKIHTTFNQLK-TFSGRFSSEKPNLQQIPRQ---------------------- 1779

Query: 356  PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                    +R   I ++    ++AD   IE ++ A I  ++  +KA+ N  D++  T + 
Sbjct: 1780 ------KNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASI 1833

Query: 416  AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                 I  ++KE R I K +   L Y       K  A+                      
Sbjct: 1834 ITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------------- 1873

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                                  +    C     ++   ++G+ +    + +         
Sbjct: 1874 ------------------YGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQ--------- 1906

Query: 536  GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
                               KR +     S+R++++                         
Sbjct: 1907 -------------------KRALQYSTLSNRKVIFP-------------------YFSFT 1928

Query: 596  KLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT-PYFSVGTLCSL 650
            K     VQ    DIL   + +   N       I+L VHDEI+ E        ++  L   
Sbjct: 1929 KALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQS 1988

Query: 651  MTK 653
            M  
Sbjct: 1989 MEN 1991


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 151/418 (36%), Positives = 220/418 (52%), Gaps = 16/418 (3%)

Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           D+ ATRE+++ L    ++  E  LW LDQ IN RG  +D++L       +  E+K+L   
Sbjct: 3   DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
             +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L+  RL 
Sbjct: 63  TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRINDPDIPPALRELLSIRLQ 122

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           S  ++  K   L +++S+DGRLRGT QF GASRTGRW+G +FQP NLPR       +   
Sbjct: 123 SCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDNG 182

Query: 344 IQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           I+AL  G       D + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ 
Sbjct: 183 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 242

Query: 401 AFANGEDI-----YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           AF+  ++      Y   YA+AFN   + V+K QR IGKVMEL LGY GG   F T A   
Sbjct: 243 AFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALAY 302

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            LDL + +             +A S +    +    + +  K+  T C+ +K+ WR  H 
Sbjct: 303 SLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAHT 361

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
             +  W D+ +     +Q  G           +L +RR K  + I LPS R L Y   
Sbjct: 362 QTVSFWYDIEDAVKQAIQSPGV-----AFKCRKLSVRRDKSWLRICLPSGRSLCYPSA 414


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 93/604 (15%), Positives = 172/604 (28%), Gaps = 128/604 (21%)

Query: 81  KKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC-LALNFSEHLTKMEEGKALIARFCK 137
           K+   + I  K +    + + T G   S  L+      L       +  + K L      
Sbjct: 371 KEWKNLGINFKNYFDILLASFTLGTDKSQKLETMAFDKLGL---SIEEIDKKILNKFD-- 425

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
               S             + +F           +E    +      E++   +   +  +
Sbjct: 426 --ATSFIEYRKNRLITMTYAIFKLKEVFMDLLEKENQLDIYL---EEKEFTDVLIYMEKQ 480

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  I+ +   K    + ++ K ++  I  +  G   +      L   LF   GI+ V  +
Sbjct: 481 GIAINQNYFEKYNLELEKKIKDIENKIY-IESGESFNISSPKQLGEVLFETMGIEGVKKN 539

Query: 258 E---GTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           +    T   +L       +   +L+L            +  L +  S +GR+  T    G
Sbjct: 540 KRGYSTDAEVLELLRDRGIKIAELLLEYRELVKLKSTYVEPLLKL-SINGRIHTTYNQTG 598

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            + TGR S      QN+P                                +R   IAS G
Sbjct: 599 -TATGRLSSSNPNLQNIP------------------------TRTYEGTKIREGFIASKG 633

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            KLV  D + IE RVLA I+ ++  I A+ +  D++  T  K F                
Sbjct: 634 MKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFM--------------- 678

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                                          + K + T  +  +  +  +         +
Sbjct: 679 ----------------------------LKDDEKVSKTQRNIAKVINFSVLYGKTPFGLS 710

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K+  +  +L    +  ++  V  L  D+ E              RR           
Sbjct: 711 KELKITVSDAKLYINTYFKEYPKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNIN 770

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
            K                              Q  R           ++Q  + +I+ + 
Sbjct: 771 IKE-----------------------------QAKRMA------VNTVIQGTAANIIKKV 795

Query: 614 MKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYE 669
           MK            ++L VHDE++ E  +        +  +M     +   + LK  G E
Sbjct: 796 MKEIYDKLCNDNVKMLLQVHDELIFEVRED-INIFEEIRDIMQNTIVF-DDVVLKVNGSE 853

Query: 670 AKRY 673
              +
Sbjct: 854 GDNW 857


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 104/666 (15%), Positives = 187/666 (28%), Gaps = 134/666 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             +T   +A D +   + D TE +      + + L   +   V H++   R     + G 
Sbjct: 342 GEVTRLVFATDKQ-ALVLDPTELTPAQDRAVAEALA--STRLVVHDAKGVRHALA-SRGW 397

Query: 87  DIPSKRWICTSVLARTNGL---PSSL-KNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
            +  +    T + A           L       L          EG    A F     + 
Sbjct: 398 TL-GEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAAD-EG----ALFDMDESEE 451

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            P          A QL        +  T E  K L  LSD E  L  L   +   G  +D
Sbjct: 452 GPTGAEMRAGRIAAQLIPL--AERLRRTLEESKELGLLSDMEMPLARLLGDMEATGIGVD 509

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------ 256
             ++  L   +  + +K      +     + +      L+  LF    +           
Sbjct: 510 TGVLSDLSAELGADVEKARRGAWEAAGREV-NLSSPKQLQELLFDHFALPKTKKTKTGYT 568

Query: 257 -SEGTLKSILSHSN-----ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
            +   L  + + +        +    L+ +R          +++L   V +D R+  T  
Sbjct: 569 TNAEALADLWAKTEASGGAGHRFLGYLLAHRDRIKLKQ--MVDSLIATVGADERIHTTFS 626

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR +      QN+P                                +R     
Sbjct: 627 Q-VAAATGRLASSDPNLQNIP------------------------ARSPDGMRIRGAFTP 661

Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G   L+ AD + IE R++A ++G++  I+AF +GED++ T  +  F TP+++VS E+R
Sbjct: 662 GPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVEQVSGEER 721

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K     L Y        +      L +            FE + +   +   +  Q 
Sbjct: 722 SRIKATSYGLAYG-----LSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVAQA 776

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                 + + G          R     +    +   E             +         
Sbjct: 777 RADGYTETMFGR---------RRYLPDLRSSNRQRREMAERAALNAPIQGSAADIV---- 823

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                                       + +N A+          G  T  +VQ      
Sbjct: 824 --------------------------KIAMMNVAS-----ALANEGLATRLLVQ------ 846

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
                             +HDE++ E           L    M      A  +PL     
Sbjct: 847 ------------------IHDELLLEIAPGEADVAEKLVRERMEGAV--ALSVPLDVAVG 886

Query: 669 EAKRYR 674
               ++
Sbjct: 887 VGASWQ 892


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 95/669 (14%), Positives = 197/669 (29%), Gaps = 152/669 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  D  L ++L  +T + V     ++     +    
Sbjct: 345 DLIGFAWSCGDK----LYATDKLELLQDPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            G+D+ +  +      +R              L  +    ++     L  +      ++ 
Sbjct: 395 FGLDLQAPAFD-----SR----------LAKYLLSTVENNEISTIANLYGQTYLVDDETF 439

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQT 193
                +    +  + F E+  R V    E    L+             D E+ L L+   
Sbjct: 440 YGKGVKKAIPE-RETFLEHLVRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAK 498

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G ++  + +L++Q       +KL ++I +L      +      L   LF   G+ +
Sbjct: 499 MEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPI 557

Query: 254 -----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                      T   +L            IL+    +      +  L + + +DG++   
Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTR 617

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P                                +R   
Sbjct: 618 YVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 652

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426
           +       L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+ 
Sbjct: 653 VPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTP 712

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L + +        + FE +   +++   + 
Sbjct: 713 NDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVV 767

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545
            +  +    + L     EL           +     ++        +      SA  +  
Sbjct: 768 REARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADILK 818

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
           +  + + +        L + R                          Y  K+        
Sbjct: 819 IAMIQLDK-------ALVAGR--------------------------YQTKM-------- 837

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664
                   +         IVL        E P +   S+  L    M +       +PL 
Sbjct: 838 --------LLQVHDE---IVL--------EVPKSELASIKKLVKQTMEEAIQ--LSVPLI 876

Query: 665 AEGYEAKRY 673
           A+  E   +
Sbjct: 877 ADENEGVTW 885


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 87/660 (13%), Positives = 168/660 (25%), Gaps = 146/660 (22%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-----FERILFKKTLGI 86
                                    L      E    +  +       ++     K LG 
Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143
               K      +        +           L       K    K  I      S  + 
Sbjct: 394 SFQ-KPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKTVFAKQKIETLSIDSYGNF 452

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                       +       K   E   E         + E  L  +  ++  +G +ID 
Sbjct: 453 LLKR----SQILYSCLEPLEKDLKEKELENVLW-----ETELPLIPVLASMEKQGIKIDR 503

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
               K    + ++   L+++I K       +      L   LFL   +     ++    T
Sbjct: 504 KYFQKYSLELNEKLVLLEKEIWKEAGEEF-NINSPKQLGEILFLKLNLPTGKKTKTGFST 562

Query: 261 LKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              +L + +         +L     +      ++ + + V  D R+       G + TGR
Sbjct: 563 DVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGR 621

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P                                +R   IA +G KL+  
Sbjct: 622 LSSSDPNLQNIP------------------------VKTEEGIRIRQGFIARDGWKLLSI 657

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + +E RVLA ++ ++  +KA+   +D++  T  K F                      
Sbjct: 658 DYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF---------------------- 695

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                +  +  + +       +  +  +         A +  + 
Sbjct: 696 ---------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGIS 734

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   K + A++  V Q   ++ E              +R+ +      R  K    
Sbjct: 735 VKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN--- 791

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618
                                     Q  R           +VQ  + +IL + M     
Sbjct: 792 --------------------------QAERMA------VNTVVQGTAAEILKKVMIKIYS 819

Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               K    ++L VHDE++ E  +      V TL + M       + + L+        +
Sbjct: 820 WLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 878


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/666 (14%), Positives = 187/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + +   ++L+ E    + H    E +     + +D+    
Sbjct: 404 IAVATAT-SAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNELRLR 520

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 575 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 787 SYGLAYG-----LSTYGL---------------------------------------AQQ 802

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 803 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 845

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 846 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 887

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 888 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 945

Query: 669 EAKRYR 674
               ++
Sbjct: 946 IGSDWQ 951


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/675 (11%), Positives = 168/675 (24%), Gaps = 153/675 (22%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L     +       ++   
Sbjct: 330 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 382

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L   + 
Sbjct: 383 SKVLLSHLGIDLPAPAFD---------------SRLAKYLLSTVDDNELSTIARLYTEYV 427

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD---------GERDL 187
             S ++      +        L     ++ V         L  L++          E+ L
Sbjct: 428 LDSDEAVYGKGAKRAVPDKAVLLSHLARKIVVLNHSEKAMLDKLTEHQQASLLFDMEQPL 487

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G  +  + +  +++       +L ++I  L      +      L   LF 
Sbjct: 488 ANVLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFD 546

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
              +             T   +L            IL     +      +  L + +  D
Sbjct: 547 KMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKD 606

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 607 GKIHTRYLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 641

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
            +R   +     + L+ +D + IE RVLA I+ ++  I AF  G DI+ +T  + F    
Sbjct: 642 LIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEK 701

Query: 422 -DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L + +        + FE +   + 
Sbjct: 702 AEDVTPNDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKD 756

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSIS 539
           +   +     +    + L     EL           +     ++ +      +      S
Sbjct: 757 YMERVVRDAKDKGYVETLFHRRREL---------PDINARNFNVRQFAERTAINSPIQGS 807

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           A  +  +  + + +   D                                          
Sbjct: 808 AADILKIAMINLDKALVDGRFKT------------------------------------- 830

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658
                       + +         I+L        E P     ++  L    M       
Sbjct: 831 ------------KMLLQVHDE---IIL--------EVPKDELEAIEKLVKETMESAIE-- 865

Query: 659 KGLPLKAEGYEAKRY 673
             +PL A+    + +
Sbjct: 866 LSVPLVADESAGQTW 880


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/660 (13%), Positives = 168/660 (25%), Gaps = 146/660 (22%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-----FERILFKKTLGI 86
                                    L      E    +  +       ++     K LG 
Sbjct: 345 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 395

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143
               K      +        +           L       K    K  I      S  + 
Sbjct: 396 SFQ-KPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKTVFAKQKIETLSIDSYGNF 454

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                       +       K   E   E         + E  L  +  ++  +G +ID 
Sbjct: 455 LLKR----SQILYSCLEPLEKDLKEKELENVLW-----ETELPLIPVLASMEKQGIKIDR 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
               K    + ++   L+++I K       +      L   LFL   +     ++    T
Sbjct: 506 KYFQKYSLELNEKLVLLEKEIWKEAGEEF-NINSPKQLGEILFLKLNLPTGKKTKTGFST 564

Query: 261 LKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              +L + +         +L     +      ++ + + V  D R+       G + TGR
Sbjct: 565 DVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGR 623

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P                                +R   IA +G KL+  
Sbjct: 624 LSSSDPNLQNIP------------------------VKTEEGIRIRQGFIARDGWKLLSI 659

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + +E RVLA ++ ++  +KA+   +D++  T  K F                      
Sbjct: 660 DYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF---------------------- 697

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                +  +  + +       +  +  +         A +  + 
Sbjct: 698 ---------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGIS 736

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   K + A++  V Q   ++ E              +R+ +      R  K    
Sbjct: 737 VKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN--- 793

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618
                                     Q  R           +VQ  + +IL + M     
Sbjct: 794 --------------------------QAERMA------VNTVVQGTAAEILKKVMIKIYS 821

Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               K    ++L VHDE++ E  +      V TL + M       + + L+        +
Sbjct: 822 WLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 880


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/662 (11%), Positives = 161/662 (24%), Gaps = 141/662 (21%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L     +       ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLAL-NFSEHLTKMEEGKALIA 133
             +     G+D+       + +          + L        ++     +   GK +  
Sbjct: 377 SKVLLSHFGVDL-PAPAFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAVYGKGVKR 435

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                          R           E    D     +    L    D E+ L  +   
Sbjct: 436 --AVPEKSVLLSYLAR---KIVVLNHSEKVMLDKLTEHQQASLLF---DMEQPLANVLAK 487

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           +   G  +    + +++        +L ++I  L      +      L   LF    +  
Sbjct: 488 MEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPT 546

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                      T   +L            IL     +      +  L + +  DG++   
Sbjct: 547 SYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTR 606

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P                                +R   
Sbjct: 607 YLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 641

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSK 426
           +     + L+ +D + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+ 
Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L + +        + FE +   +++   + 
Sbjct: 702 NDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545
               +    + L     EL           +     ++ +      +      SA  +  
Sbjct: 757 RDAKDKGYVETLFHRRREL---------PDINSRNFNIRQFAERTAINSPIQGSAADILK 807

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
           +  + + +   D                                                
Sbjct: 808 IAMINLDKALVDGQFKT------------------------------------------- 824

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
                 + +         I+L V        P     +V TL    M         +PL 
Sbjct: 825 ------KMLLQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--LSVPLI 865

Query: 665 AE 666
           A+
Sbjct: 866 AD 867


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/576 (16%), Positives = 166/576 (28%), Gaps = 120/576 (20%)

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             +      L+ +           L  RF   SI S   D    + V+A     E     
Sbjct: 405 HDMSLLAYLLDPTRTNYGYL---YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACES 461

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
               RE    L      E  L      +   G  ID + + +       E  ++ ++I  
Sbjct: 462 AR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTNKLAETTARFKDELAQVQQEIYD 517

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283
           L  G   +      L + LF    + ++  ++    T   +L          + IL   +
Sbjct: 518 LA-GETFNINSPKQLGVILFEKMNLPVIKKTKTGYSTDAEVLDMLRNESPIVEKILAYRS 576

Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
            +      L  L+  ++    R+  T      + TGR S      QN+P           
Sbjct: 577 VAKLVSTYLEGLAVLINDKTKRIHTTFNQMV-TATGRLSSSDPNLQNIP----------- 624

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401
                                +R+      G   LV AD + IE R+LA ++G++  IKA
Sbjct: 625 -------------VRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKA 671

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F +G+DI+  T A+      + V+ E+R+  K +   + Y               L + +
Sbjct: 672 FVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKAINFGIIYG-----ISDFGLSRDLGITR 726

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                     F  + + + +   M  +  E      + G   EL           +    
Sbjct: 727 GEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQREL---------PDINSRN 777

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            +                                                      + +N
Sbjct: 778 FNRRSFAER-----------------------------------------------TAMN 790

Query: 582 TATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638
           T             KL  N V Q               +  +   ++L VHDE+V E  +
Sbjct: 791 TPIQG---TAADIIKLAMNQVEQ------------KLEEGNFKSRLLLQVHDELVLEVVN 835

Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               +V  L    M         +PL  + + A+ +
Sbjct: 836 EELEAVEELLRSTMQSVVE--LHVPLIVDVHHAENW 869


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 165/662 (24%), Gaps = 141/662 (21%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L     +       ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LG+D+       + +                               +  A + 
Sbjct: 377 SKVLLSHLGVDL-PAPAFDSRLAKYLL-STVDDNELSTIARL----YTDYVLDSDEAVYG 430

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCK---RDVEATRELFKRLIPLSDGERDLWLLDQT 193
           KG   + P      +H+    +   + +    D     +    L    D E+ L  +   
Sbjct: 431 KGVKRAVPKKAVLLSHLARKIVVLNHSEKVMLDKLTEHQQASLLF---DMEQPLANVLAK 487

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           +   G  +    + +++        +L ++I  L      +      L   LF    +  
Sbjct: 488 MEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPT 546

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                      T   +L            IL     +      +  L + +  DG++   
Sbjct: 547 SYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTR 606

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P                                +R   
Sbjct: 607 YLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 641

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSK 426
           +     + L+ +D + IE RVLA I+ ++  I AF  G DI+ +T  + F     + V+ 
Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L + +        + FE +   +++   + 
Sbjct: 702 NDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545
               +    + L     EL           +     ++ +      +      SA  +  
Sbjct: 757 RDAKDKGYVETLFHRRREL---------PDINSRNFNIRQFAERTAINSPIQGSAADILK 807

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
           +  + + +   D                                                
Sbjct: 808 IAMINLDKALVDGQFKT------------------------------------------- 824

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664
                 + +         I+L V        P     +V TL    M         +PL 
Sbjct: 825 ------KMLLQVHDE---IILQV--------PKNELEAVKTLVKETMESAID--LSVPLI 865

Query: 665 AE 666
           A+
Sbjct: 866 AD 867


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/656 (12%), Positives = 176/656 (26%), Gaps = 131/656 (19%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDI 88
           L  +AW ++                  + L       +   + ++     +    LG+D+
Sbjct: 344 LIGFAWGNQGQIYASADISLLTTELFKKVLEQP----I---ATYDFKRSKVLLSHLGLDL 396

Query: 89  PSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPY 145
           P+  +    +          + +               ++  GK +       ++     
Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 455

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                  + +  +  +      +A           +D E  L  +   +   G  ++ D 
Sbjct: 456 ARKVQVLLDSRPVMLDKLAEHEQADL--------YTDIELPLANVLAKMEIEGIAVNQDS 507

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           + ++ E      ++L ++I ++  G + +      L + LF    +             T
Sbjct: 508 LQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYST 566

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DGR+         ++TGR 
Sbjct: 567 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQ-DLTQTGRL 625

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R       +   L+ +
Sbjct: 626 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHDDAVLLSS 661

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   
Sbjct: 662 DYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFG 721

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   + +   +  +  +    + L
Sbjct: 722 IVYG-----ISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETL 776

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                       R +   +     ++               +                  
Sbjct: 777 FKR---------RRQLPDINSRQFNVRSFAERTAINSPIQGSAADI-------------- 813

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                   ++   ++          T                             +    
Sbjct: 814 -------LKIAMINLDQALVAGGFETK---------------------------MLLQVH 839

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                IVL        E P+    +V  L    M    + A  +PL+ +    K +
Sbjct: 840 DE---IVL--------EVPNHELAAVKELVKETMESAVNLA--VPLRVDESAGKSW 882


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/664 (12%), Positives = 175/664 (26%), Gaps = 144/664 (21%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86
           I   A+                       ++L  +T + V     ++     +    LGI
Sbjct: 338 IIGFAWGTKGH--LYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
            + +  +      +R              L  +    ++    +L ++      +     
Sbjct: 390 TLQNPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQIALPLDEVVYGK 434

Query: 147 CTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTINDR 197
             +    +   L     ++               +   +L  L D E+ L  +   +   
Sbjct: 435 GAKKAIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIA 494

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----- 252
           G +++   +  +Q       ++L ++I +L      +      L + LF    +      
Sbjct: 495 GIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLEYTK 553

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                  T   +L            IL     +      +  L + +  DG++       
Sbjct: 554 KTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQ- 612

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             ++TGR S      QN+P                                +R   +   
Sbjct: 613 DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEE 648

Query: 373 -GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430
               L+ +D + IE RVLA I+G++  I AF +G DI+ +T  + FN    + V+   R 
Sbjct: 649 ENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRR 708

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +   + Y               L + +        + FE +   + +   +  +  
Sbjct: 709 NAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREAR 763

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           +    + L            R +   +     ++               +          
Sbjct: 764 DKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQGSA--------- 805

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                                        +      L R   Y  K+             
Sbjct: 806 ----------------------ADILKIAMIHLDQALERGA-YKTKM------------- 829

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
              +         IVL V        P     ++  L    M         +PL+A+  E
Sbjct: 830 ---LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELV--VPLEADENE 873

Query: 670 AKRY 673
            K +
Sbjct: 874 GKTW 877


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/572 (14%), Positives = 134/572 (23%), Gaps = 113/572 (19%)

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L   E   +  E     A    G     P D +     +            ++A 
Sbjct: 405 ELGDYLLHPEESRRDIE---RTAFALCGDAAEAPADLSDEQRAEREAQLAARLHSPLQAA 461

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                 L    D E  L  +   +   G  ++   + + +         L E+I  L   
Sbjct: 462 LAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEEIHALAGM 521

Query: 231 IIRSSRQTYALRMYLFLIT------GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
              +      L   LF          I        T    L          D +L     
Sbjct: 522 EF-NISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDKVLTYRMW 580

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
           +      L+ +   +    GR+         + TGR S      QN+P            
Sbjct: 581 TKLRSTYLDGIGALIRPETGRVYTNFNQTV-TATGRLSSSDPNLQNIP------------ 627

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402
                               VR+      G   L+ AD + IE R+LA ++G+   I AF
Sbjct: 628 ------------VRTEEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGDATLIDAF 675

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +G+DI+  T A+ F  PID V+ EQR   K +   + Y               L + + 
Sbjct: 676 RHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVYG-----LSDYGLSRDLRIPRK 730

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                    FE +                      L G   EL           +     
Sbjct: 731 EAAGYIERYFERYHGVREFLDKTVADAHANGYVTTLYGRRREL---------SAINSRNY 781

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                   +                                   ++              
Sbjct: 782 MQRSFAERMAMNTPIQGTAADLI---------------------KIAMIRAHDALHAAGV 820

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            +                             +                E+V E  +    
Sbjct: 821 KSRI---------------------------LLQVHD-----------ELVLEAAEAEIA 842

Query: 643 SVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            V  L    M+     A  +PL  + +  K +
Sbjct: 843 QVSGLLRTAMSGAAELA--VPLAVDVHIGKNW 872


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/549 (13%), Positives = 155/549 (28%), Gaps = 92/549 (16%)

Query: 8   IETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLR 62
            E  S         +G   + E     L   AW +        T   ++  +    + L 
Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368

Query: 63  DETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-- 116
               +       ++     +      ID+P   +  T +          +L +    L  
Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYT 420

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           N          GK                        +  +   +  K  V++   + ++
Sbjct: 421 NLPLDTDDAVYGKGAKR--------------AIPEKTRFLEHLAKKVKVLVDSEANIMQQ 466

Query: 177 LIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
           L          + E+ L  +   +  RG ++  + + ++     +  + L ++I +L   
Sbjct: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526

Query: 231 IIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              +      L   LF   G+             T   +L            IL     +
Sbjct: 527 EF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQIT 585

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L + +  DG++         ++TGR S      QN+P              
Sbjct: 586 KLQSTYIIGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP-------------- 630

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   + S     L+ +D + IE RVLA I+ ++  I AF  
Sbjct: 631 ----------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE 680

Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           G DI+ +T  + F     + V+   R   K +   + Y               L + +  
Sbjct: 681 GADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNLGIPRKL 735

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                 + FE +   +++   +  +  +    + L            R     +     +
Sbjct: 736 AKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR---------RRSLPDINSRNFN 786

Query: 524 LTEGFACVV 532
           + +      
Sbjct: 787 IRQFAERTA 795


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/667 (12%), Positives = 166/667 (24%), Gaps = 151/667 (22%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L  + V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L     
Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187
             + +       +    +   L     K+           L  L          D E  L
Sbjct: 423 LETDEVVYGKGAKRAVPEKEVLLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPL 482

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G ++    + ++         KL ++I ++      +      L + LF 
Sbjct: 483 ANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFE 541

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             G+             T   +L            IL     +      +  L + +  D
Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 602 GKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
            +R   + S     L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F    
Sbjct: 637 LIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L + +        + FE +   ++
Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYIDTYFERYPGIKA 751

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +   +  +  +    + L     EL           +     ++               +
Sbjct: 752 YMDNVVREAKDKGYVETLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                     ++   ++          T                
Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
                        +         IVL V        P+    ++  L    M      A 
Sbjct: 827 ------------MLLQVHDE---IVLEV--------PNDELVAMKALVKETMEAAVELA- 862

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 863 -VPLIAD 868


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/598 (13%), Positives = 156/598 (26%), Gaps = 131/598 (21%)

Query: 87   DIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            DI +       + A          S +  C A      +              + +  + 
Sbjct: 549  DISTAALFDVGLAAYLLNSDANDYSWQTLCSAY-LPTFVYPDTT-----DDTDEPNEYAL 602

Query: 144  PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                 RA +    +L       D+    EL             L  +   +   G   D 
Sbjct: 603  EAIAVRALYPVLRELLHTDGSDDLFYELEL------------PLIPVLLHMERNGIYCDK 650

Query: 204  DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----- 258
             L+ +    ++ E   +  ++ +L      +      L   LF + G+    + +     
Sbjct: 651  HLLAEQSRALSHELNAMSLELRRLAQQDF-NIDSPMQLSHVLFDVWGLPTKGLKKTRRGY 709

Query: 259  -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
              T    L+  ++      LIL+           L+ L   + SDGR+  T     A  T
Sbjct: 710  YSTNAQTLASLSMADERVQLILDYRERMKIKNTYLDALVHDIRSDGRIHSTFNQTIA-AT 768

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR S      QN+P                                VR   +       +
Sbjct: 769  GRLSSSDPNLQNIP------------------------TRSSLGHRVRKAFVLPRNHLFL 804

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
              D + IE R+LA ++ ++  I AF  G D +  T A+ F+   D+V+   R+  K +  
Sbjct: 805  ACDYSQIELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNF 864

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
             + Y       +       L + +          FE +               E +    
Sbjct: 865  GIVYGQ-----QAFGLATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPT 919

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556
            + G    + +   R            L        +      SA  +  +  + + +   
Sbjct: 920  MYGRKRHIAQIDSR---------NFQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKQFA 970

Query: 557  DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
             +                                              ++  ++      
Sbjct: 971  QL---------------------------------------------GLASKLI----LQ 981

Query: 617  ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                         DE+  E        V ++    M    +    +PL AE   A  +
Sbjct: 982  IH-----------DELDFEVVPEELERVSSVVKRAMEGVVT--LRVPLIAEISYADNW 1026


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/762 (13%), Positives = 209/762 (27%), Gaps = 191/762 (25%)

Query: 2   SKLFIDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA- 52
           S++ ID+ET    P      + K  + AY  ++Q  I     +             +   
Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266

Query: 53  --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   +   L + L  E +  +AHN  F+    + +L I +    W  T ++     
Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIID 324

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                 +    L + E          +         + P  +      +  W +   Y  
Sbjct: 325 YRGERYSWSKRLAWLET--------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLA 376

Query: 165 RDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            D + T  L ++ IPL +                +     I   G  +D + +  L+   
Sbjct: 377 DDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSY 436

Query: 214 AQERKKLDEDIVKLTDG------------------------------------------- 230
            +E  +L++ + +  +G                                           
Sbjct: 437 EKEISRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSK 496

Query: 231 --IIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                +   T  L   LF   G++        +  T    L           +++    +
Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRKA 556

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  +     
Sbjct: 557 NHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNF 615

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           +      +                   +G  +V  D + +E R+L       + I  + +
Sbjct: 616 EIKKMFNSRFG----------------DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++    + AF   I++VSK+QR   K ++  + YQ  A+         G+       
Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +    CE+  K +  +   V +  +D 
Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            +    +        A R       + +    +                           
Sbjct: 741 KKHVKDISTVKTLTGATRNLPDIDSIDQSKANE--------------------------- 773

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
               R+           +Q    D     +    +          I +TVHD IV + P 
Sbjct: 774 --AERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825

Query: 639 TPY-FSVGTLCSLMTKNPSWAK------GLPLKAEGYEAKRY 673
                    +  +M     + +       +P+ +E    + Y
Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNY 867


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/658 (12%), Positives = 180/658 (27%), Gaps = 135/658 (20%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDI 88
           L  +AW ++                  + L       +   + ++     +    LG+D+
Sbjct: 344 LIGFAWGNQGQIYASADISLLTTKLFKKVLEQP----I---ATYDFKRSKVLLSHLGLDL 396

Query: 89  PSKRWICTSVLARTN-----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
           P+  +    +             ++L      ++      ++  GK +       ++   
Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTISLDTD--EVVYGKGVKRAVPDKAVLLG 453

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                    + +  +  +      +A           +D E  L  +   +   G  ++ 
Sbjct: 454 HLARKVQVLLDSRPVMLDKLAEHEQADL--------YTDIELPLANVLAKMEIEGIAVNQ 505

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSE 258
           D + ++ E      ++L ++I ++  G + +      L + LF    +            
Sbjct: 506 DSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGY 564

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    +      +  L + + +DGR+         ++TG
Sbjct: 565 STAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQ-DLTQTG 623

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R       +   L+
Sbjct: 624 RLSSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHDDAVLL 659

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
            +D + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K + 
Sbjct: 660 SSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVN 719

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L + +        + FE +   +++   +  +  +    +
Sbjct: 720 FGIVYG-----ISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVE 774

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            L            R +   +     ++               +                
Sbjct: 775 TLFKR---------RRQLPDINSRQFNVRSFAERTAINSPIQGSAADI------------ 813

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                     ++   ++          T                             +  
Sbjct: 814 ---------LKIAMINLDQALVAGGFETK---------------------------MLLQ 837

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                  IVL        E P+    +V  L    M    S A  +PL+ +    K +
Sbjct: 838 VHDE---IVL--------EVPNHELAAVKALVKETMESAVSLA--VPLRVDESAGKSW 882


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L Q+L+ E    + H    E +     + +D+    
Sbjct: 404 IAVATAT-SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 460

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNELRLR 520

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 575 RDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 787 SYGLAYG-----LSTYGL---------------------------------------AQQ 802

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 803 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 845

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 846 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 887

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 888 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 945

Query: 669 EAKRYR 674
               ++
Sbjct: 946 IGSDWQ 951


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/692 (13%), Positives = 190/692 (27%), Gaps = 161/692 (23%)

Query: 28   AVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A   +   A     +   D  +   A+   L ++L+  + + V H+         K LG+
Sbjct: 446  ADCLIILIANKAAILYTTDLQSSDQALLEMLRKFLQKNSSITVLHDYK-------KHLGL 498

Query: 87   ----------DIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIA 133
                      +      + T + +          +L+N            +   G+    
Sbjct: 499  LKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHY-LDIQSVEDNLGENEAK 557

Query: 134  RF-----------CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +                  +      R        L          +T +  K+   ++D
Sbjct: 558  QGELDLLIDNEVSSSEEETNEKQTQAREAKFLKTALLIRLLALHFASTLDDRKQTGLMTD 617

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  +  + + + D G  +D+  +  + +  + +  +  +++     G   + +    L+
Sbjct: 618  LEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSAD-AEFAQNMAWKVAGSSVNLQSPKQLQ 676

Query: 243  MYLFLITGIDLVDMSE----GTLKSILS--------HSNITQLAKDLILNRLASSGSAIL 290
              LF   G+     ++     T    L             +Q    L+ +R  +    I 
Sbjct: 677  QILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI- 735

Query: 291  KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             + +L +A   D R   T      + TGR S      QN+P                   
Sbjct: 736  -VQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIP------------------- 775

Query: 351  ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                     A   +R+  I     + L+  D + +E R++A  + +   I+AF +G D +
Sbjct: 776  -----NRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGVDFH 830

Query: 410  VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                +  +  P+++V+ +QR+  K M   L Y        T      L            
Sbjct: 831  KYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYG-----LSTYGLAKQLS----------- 874

Query: 470  STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                        +     E++K  +      V    + L     
Sbjct: 875  ----------------------------ISPAEAEMLKNKYFDTFGNVHDYLESLVSKAK 906

Query: 530  CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
             +                                  RR  +  +  +      A  +   
Sbjct: 907  ELGYTETMF--------------------------GRRRYFPQLSSNNRASREAAERG-- 938

Query: 590  ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643
                        +Q  + DI+   M          K    ++L +HDE++ E        
Sbjct: 939  -------ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQAQ 991

Query: 644  VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
            V  +    M         +PL         ++
Sbjct: 992  VENIVRKAMENAVH--LDVPLSVSTGVGVDWQ 1021


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/656 (12%), Positives = 176/656 (26%), Gaps = 131/656 (19%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDI 88
           L  +AW ++                  + L       +   + ++     +    LG+D+
Sbjct: 357 LIGFAWGNQGQIYASADISLLTTELFKKVLEQP----I---ATYDFKRSKVLLSHLGLDL 409

Query: 89  PSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPY 145
           P+  +    +          + +               ++  GK +       ++     
Sbjct: 410 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 468

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                  + +  +  +      +A           +D E  L  +   +   G  ++ D 
Sbjct: 469 ARKVQVLLDSRPVMLDKLAEHEQADL--------YTDIELPLANVLAKMEIEGIAVNQDS 520

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           + ++ E      ++L ++I ++  G + +      L + LF    +             T
Sbjct: 521 LQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYST 579

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DGR+         ++TGR 
Sbjct: 580 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQ-DLTQTGRL 638

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R       +   L+ +
Sbjct: 639 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHDDAVLLSS 674

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   
Sbjct: 675 DYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFG 734

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 735 IVYG-----ISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETL 789

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                       R +   +     +L               +                  
Sbjct: 790 FKR---------RRQLPDINSRQFNLRSFAERTAINSPIQGSAADI-------------- 826

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                   ++   ++          T                             +    
Sbjct: 827 -------LKIAMINLDQALVAGGFETK---------------------------MLLQVH 852

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                IVL        E P     +V  L    M    + A  +PL+ +    K +
Sbjct: 853 DE---IVL--------EVPSHELAAVKELVKETMESAVNLA--VPLRVDESAGKSW 895


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/667 (12%), Positives = 166/667 (24%), Gaps = 151/667 (22%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW +E                    L  + V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L     
Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187
             + +       +    +   L     K+           L  L          D E  L
Sbjct: 423 LETDEVVYGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G ++    + ++         KL ++I ++      +      L + LF 
Sbjct: 483 ANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFE 541

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             G+             T   +L            IL     +      +  L + +  D
Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 602 GKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
            +R   + S     L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F    
Sbjct: 637 LIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L + +        + FE +   ++
Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYIDTYFERYPGIKA 751

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +   +  +  +    + L     EL           +     ++               +
Sbjct: 752 YMDNVVREAKDKGYVETLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                     ++   ++          T                
Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
                        +         IVL V        P+    ++  L    M      A 
Sbjct: 827 ------------MLLQVHDE---IVLEV--------PNDELVAMEALVKETMEAAVELA- 862

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 863 -VPLIAD 868


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/598 (13%), Positives = 154/598 (25%), Gaps = 140/598 (23%)

Query: 95  CTSVLARTNGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T++ A          +L       L               +A     + ++        
Sbjct: 2   DTALAAYLVKPGRRSFALDVLSVEYLGRELQP---PAADGQLAFGADDTAEADALMAQAR 58

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
             +     F                    L + E     L   +   G   D D +  ++
Sbjct: 59  AVLDLGDAFTAKLPEVGAVEL--------LHEMELPTSELLARLERAGIAADRDHMEGME 110

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKS 263
           +  A   ++  ++          +      L+   F    +                L  
Sbjct: 111 QQFAGAVQQAVKEAHAAVGHEF-NLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAW 169

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           + + ++       ++L     +   +  +  L +++++DGR+  +     A  TGR S  
Sbjct: 170 LATQTDHELPV--IMLRHREQAKLRVT-VEGLVKSIAADGRVHTSFSQTTA-ATGRLSST 225

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382
               QN+P                                +R   +   G + L+ AD +
Sbjct: 226 DPNLQNVP------------------------VRTDEGRAIRRGFVVGEGYESLMTADYS 261

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE RV+A ++ ++  I+AF +GED++ T  ++ F     +V  E R   K M   L   
Sbjct: 262 QIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERSQVDAEMRRKIKAMSYGL--- 318

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        GL     +Q +                                    
Sbjct: 319 -----------AYGLSAFGLAQQLNIEPA------------------------------E 337

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
              + + +  +  GV    + + +                                    
Sbjct: 338 ARGLMETFFERFGGVRDYLQRVVDEARATGYTATVF------------------------ 373

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    D+  D      A  ++              +Q  + DI+   M    K   
Sbjct: 374 --GRRRYLPDLNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKAIA 422

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDEIV E        V  L    M          PL         +
Sbjct: 423 EAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAAVELRA--PLDVSVGVGGDW 478


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 143/394 (36%), Positives = 208/394 (52%), Gaps = 19/394 (4%)

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
            +L     +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L
Sbjct: 2   NRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPALREL 61

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +  RL S  ++  K   L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR     
Sbjct: 62  LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 121

Query: 338 EILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
             +   I+AL  G       D + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AG
Sbjct: 122 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 181

Query: 395 EDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           E+WK+ AF+  ++      Y   YA+AFN   + V+KEQR IGKVMEL LGY GG   F 
Sbjct: 182 ENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFL 241

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           T A   GLDL + ++            +A   +    +    + + +K+  T C+ +K+ 
Sbjct: 242 TFALAYGLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRM 300

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR  H   +  W D+ +     +Q  G           +L +RR K  + I LPS R L 
Sbjct: 301 WRNAHPQTVSFWYDIEDAVKQAIQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLC 355

Query: 570 YSDVKGDC---SYLNT--ATSQLMRERTYGGKLT 598
           Y   + +    +Y+ T   + +  R +TYGGKL 
Sbjct: 356 YPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 103/772 (13%), Positives = 195/772 (25%), Gaps = 166/772 (21%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLW----DRTEQSAMP 54
              D E      L K           +   +        + D   ++W    D  E   + 
Sbjct: 657  ACDTE-VIDIDLKKFSP---IGHGKMICFSIYCGPQVKFHDGNSRVWVDVMDDIEGDEIL 712

Query: 55   SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SS 108
                +Y  DE+++ V HN  F+R +F    GI++       T  +AR            S
Sbjct: 713  QVFKEYFEDESILKVWHNYAFDRHIFYNH-GINVKGFG-GDTLHMARLWNASRMNSGGYS 770

Query: 109  LKNACLA-LNFSEHLTKMEEGKALIARFCKGSID-SPPYDCTRANHVQAWQLFGEYCKRD 166
            L+      LN  +   K   G   I    +       P         +    + EY   D
Sbjct: 771  LEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLD 830

Query: 167  VEATREL----FKRLIPLSDG----ERDLW--------LLDQTINDRGYRIDLDLVLKLQ 210
             E T  L      +L  +         D +         L   +  RG ++D+D +  L+
Sbjct: 831  SELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLE 890

Query: 211  ELIAQERKK-----LDEDIVKLTDGIIRSSRQTYALRMYLF--------------LI--- 248
            E    + ++     L+       D    +      ++   F                   
Sbjct: 891  EKAYTDMEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKTKESLPLEKDFE 950

Query: 249  -------------------------TGIDLVDMS----EGTLKSILSHSNITQLAK-DLI 278
                                      G++   ++         S L              
Sbjct: 951  CDNLDGTIEVGKTKPKKKKTFYLRGIGMESKSLTTNGWPSVDSSSLRELAGKNPIDGKYG 1010

Query: 279  LNRLASSGSAILKLNTLS----EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP--- 331
                    S       L     E +  +  +         S     +  +   Q L    
Sbjct: 1011 SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQKLADSN 1070

Query: 332  ---RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
                   +    T  + +          L      +R       G  L+VAD   +E R+
Sbjct: 1071 SRLHTSINVNTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRL 1130

Query: 389  LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            LA I      I AF  G D +  T    +    + + +         E+ L +       
Sbjct: 1131 LAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDR--------GEVLLEWD------ 1176

Query: 449  KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                   G             ++     +  +  +         +    +     +    
Sbjct: 1177 -------GEGEPPKPLLKNVYASERRKAKTLNFSIAYGKTAHGLSQDWGVTLNEAKETLN 1229

Query: 509  AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
             W      VL   +   E           +                           R  
Sbjct: 1230 RWYEDRPEVLVWQRKTIETAHKYGWTRTLM--------------------------GRYR 1263

Query: 569  VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGY 622
               D+KG+            R            +Q  + DI+ + M          + G+
Sbjct: 1264 QLPDIKGN----KGMKGHAERASI------NTPLQGGAADIVMKAMLIIEDNKRLKELGF 1313

Query: 623  DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +++ +HDE++ E P+       ++  +LM+   +    + L  +   AK +
Sbjct: 1314 KLIMQIHDELILEGPEQHADEARSIMMNLMSNPLTTPLLIDLVVDCRYAKTW 1365


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 99/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L Q+L+ E    + H    E +     + +D+    
Sbjct: 399 IAVATAT-SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 455

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNELRLR 515

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 570 RDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940

Query: 669 EAKRYR 674
               ++
Sbjct: 941 IGSDWQ 946


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/666 (15%), Positives = 181/666 (27%), Gaps = 138/666 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGI 86
             +T  A A  D           +      L  +L D       H +      +      
Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADAEQPKALHEAK-----WAMHA-- 414

Query: 87  DIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCK 137
            +  + W+       T++ A          +L +  L     E   +             
Sbjct: 415 -LRGRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEET---GQEQLSLL 470

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              D    +      + A  +       D E        L+   + E  L  +   I   
Sbjct: 471 DDADQVDAEAAETEILSARAVLDLAAALDTELDNIESTALLS--EMELPLLEVLAVIEAS 528

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM- 256
           G  +D   +  LQ   A E  +  E       G   +      L++ LF    +      
Sbjct: 529 GIAVDGTHLHDLQSRFAAEVSEAAEAAY-GVIGKQINLGSPKQLQVVLFDELEMPKTKKT 587

Query: 257 ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                     L+++   ++   L    +L    ++   +  ++ L + V+ DGR+  T  
Sbjct: 588 KTGYTTDAEALQNLFEKTSHPFLEH--LLAHRDATRLKVT-VDGLLKTVAEDGRIHTTFN 644

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                            A   +R   + 
Sbjct: 645 QTVA-ATGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVV 679

Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G   L+ AD + IE R++A ++G+   I+AF  GED++    A+AF  PI++V+ E R
Sbjct: 680 GEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELR 739

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K M   L Y               L +       +  + F  +     +   + +Q 
Sbjct: 740 RRVKAMSYGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQA 794

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPR 548
            +      L G          R     +    +   E             +A  +  V  
Sbjct: 795 RKDGYTSTLYGR---------RRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAM 845

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
           + ++             R L  + +K                                  
Sbjct: 846 INVQ-------------RSLREAGLKS--------------------------------- 859

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEG 667
                +         +VL        E  D+    V  L    M+        +PL    
Sbjct: 860 ---RMLLQVHDE---LVL--------EVVDSEREQVEQLVRDKMSSAIE--LSVPLDVSV 903

Query: 668 YEAKRY 673
              + +
Sbjct: 904 GTGRSW 909


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 166/663 (25%), Gaps = 144/663 (21%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
            Y +  EP  +          +     L D  V  + H+   +   +    G  +     
Sbjct: 354 GYVFGGEPALI-----SEEDSAAFSALLSDPNVGKIGHSMKVQIHAWLG-EGYTLAGI-V 406

Query: 94  ICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
             T + A                   L           G A          +       R
Sbjct: 407 GDTEIDAYLLHPDQRTYDFTDLVQRYLAI------DLGGGAQDTLGIGLDGEIVDDLAAR 460

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A      +          E +  L        + E  +  +   +  RG  +D D + +L
Sbjct: 461 AVATHDLRDAFARALETEEQSDALR-------EMELRVCDVLARMEQRGIAVDADQLARL 513

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILS 266
                    +      +       +      L+  LF   G+     ++    T    L 
Sbjct: 514 HADFDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALE 573

Query: 267 H-------------SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                                  L+ +R A        +  L  ++  D R+R T Q   
Sbjct: 574 QLLVKISMREDDQALAGQNFLTGLLAHRDAIKLRQS--VEGLQRSLGDDQRIRTTYQQTV 631

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  TGR S      QN+                                 +R   +  +G
Sbjct: 632 A-ATGRLSSTDPNLQNI------------------------HARTEEGQKIREVFVPGDG 666

Query: 374 K-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              L+ AD + IE R++A ++G+   I AF  G D++    ++ F     +V+  QR+  
Sbjct: 667 YDYLMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKI 726

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K M   L Y               L +            F  + + + +   +  Q  + 
Sbjct: 727 KAMSYGLVYG-----LSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKD 781

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                L+G          R     +    + + E    +        +   A++ ++ M 
Sbjct: 782 GFTQTLLGR---------RRYLPELSSTNRQVRESAERMALNAPIQGSA--ADIIKIAML 830

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
             +R++     SSR L                                            
Sbjct: 831 NVERELAAAQLSSRVL-------------------------------------------- 846

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
                              +V E   +    V  +    M     W   +PL       +
Sbjct: 847 --LQVHDE-----------LVLEVAASEAEQVEAIVREQMGNA--WELSVPLSVGVGIGR 891

Query: 672 RYR 674
            +R
Sbjct: 892 NWR 894


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L ++L+ E    + H    E +     + +D+    
Sbjct: 131 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 187

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 188 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 247

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 248 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 301

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 302 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 360

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 361 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 417

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 418 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 453

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++ ++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 454 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 513

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T                                          A +
Sbjct: 514 SYGLAYG-----LSTYGL---------------------------------------AQQ 529

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     E +K  +      V    + L                               
Sbjct: 530 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 572

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR  +  +         A  +               +Q  + DI+   M 
Sbjct: 573 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 614

Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668
            A +          I+L +HDE+V E        V  L    M      A  +PL     
Sbjct: 615 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 672

Query: 669 EAKRYR 674
               ++
Sbjct: 673 IGSDWQ 678


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/655 (14%), Positives = 186/655 (28%), Gaps = 141/655 (21%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           +        + +   ++L+ E    + H    E +     + +D+       T +     
Sbjct: 414 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 471

Query: 104 --GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                + SLK A             +  +  +        + P     R   +       
Sbjct: 472 QPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLRDLAIIRSLAVT 531

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                D    RE    +  +   E  +  +   +   G ++D   ++ +++  A E ++ 
Sbjct: 532 LGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQA 585

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-------- 268
            E   +     I + +    L+  LF   G+     ++     T  + L           
Sbjct: 586 QEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNE 644

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   L+ +R  +    I  + TL +A + SD R+  T +   A  TGR S      
Sbjct: 645 RANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-ATGRLSSVDPNL 701

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEA 386
           QN+P                            A   +R   +   G + L+  D + +E 
Sbjct: 702 QNIP------------------------NRNAAGREIRGVFVPGEGYEALMSCDYSQVEL 737

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y     
Sbjct: 738 RIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG---- 793

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
              T                                          A + K+     E +
Sbjct: 794 -LSTYGL---------------------------------------AQQLKIAPREAEAL 813

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           K  +      V    + L                                         R
Sbjct: 814 KNRYFDTFGKVHDYLESLVANAREKGYTETIF--------------------------GR 847

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R  +  +         A  +               +Q  + DI+   M  A +       
Sbjct: 848 RRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMIRAEQTLAEAHV 898

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
              I+L +HDE+V E        V  L    M      A  +PL         ++
Sbjct: 899 KSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDWQ 951


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 196/709 (27%), Gaps = 152/709 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTE--QSAMPS-- 55
            +  D ET              A     A I  CA++  +             + +    
Sbjct: 24  IIAFDFET--APDEAYRAEEKAALDPARAHIVGCAFSASERTGIYVPVAHKIGANIDRTA 81

Query: 56  ---DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----------RT 102
               L   L +  +  VAHN  FE  +     GI I       T   A          R 
Sbjct: 82  FFLFLADLLANPHITKVAHNIAFESSM-AYARGIVIQP-PVYDTIAAAQMTSRSAYEFRR 139

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                 LK+    L   E L    E           + D        A+   +      Y
Sbjct: 140 LNES-GLKHLAGEL-LEESLPTFAETTGGKHFDELPAQDKETVRYGAADADFS---LRLY 194

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
              +    R L +    +   E    +    + + G  ID  L+ K +     E +++ +
Sbjct: 195 HTFNGWFDRYLPRHRWIVEHMESPTAIYLGVMKNNGVPIDQSLMQKRKAESEMEMERIRQ 254

Query: 223 DIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVD-MSEGTL-----------KSILSHSN 269
           +I  L   +   +   T   + YLF   G+ ++   ++              +    H  
Sbjct: 255 EITFLIGDVNIGANCSTADFKKYLFESQGLPVLKVTNKSQAALDDMAMVLLGEWCEEHKP 314

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  L+             ++   + ++   +      F  ++ TGR +      QN
Sbjct: 315 ELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFALSTDTGRMNCRKPNCQN 374

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +PR+                              VR+ I A +G  ++  D + IE RV 
Sbjct: 375 MPRKSNDPIG------------------------VRNFIKAPSGHLILSLDFSQIELRVG 410

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQ 442
           A+   ++  ++ +  G DI+  T    F    ++         KE+R I K +     Y 
Sbjct: 411 AFYCRDERMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFYG 470

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
              +  +                                         +  V+  L    
Sbjct: 471 LFPRGLQNTLK------------------------------------FKAGVEKTLP--E 492

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           CE V    +A ++ +    ++     A                            ++   
Sbjct: 493 CESVIANLKAGYRELSTWQEETKVQAAR--------------------------RLYSET 526

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617
              RR    D++         + +  R+           +Q  + DIL   +        
Sbjct: 527 WLGRRRYLPDIR---------SKEWARKSFAERCALNTPIQGTAADILKLAIVRILKGLP 577

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665
            +     +L +HDE+    P       V  + + M + P     LPL A
Sbjct: 578 DRPWLKPILQIHDELTFIIPAGRLDEAVAFIRACMEEQPFPEFDLPLIA 626


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 111/437 (25%), Gaps = 51/437 (11%)

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L   E   +          F   +  +           +A          + E  
Sbjct: 405 ELADYLLHPEESRRDMA--RAAFAFLGDTTSAEGLSPEAYAVHEALLSARLQPIMETELA 462

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +    L      E  L  +   +   G  ++   +   +    +    L  +I  L   
Sbjct: 463 AQELMHLYRTV--ELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHTLAGT 520

Query: 231 IIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              +      L   LF   G+             T    L          D +L     +
Sbjct: 521 EF-NISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTYRMWT 579

Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                 L+ +   +    GR+  +      + TGR S      QN+P             
Sbjct: 580 KLRSTYLDGIGALIRPATGRVHTSFNQTV-TATGRLSSSDPNLQNIP------------- 625

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                              VR+      G   L+ AD + IE R+LA ++G+   I AF 
Sbjct: 626 -----------VRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFR 674

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G+DI+  T A+ F  P+D V+ EQR   K +   + Y               L + +  
Sbjct: 675 QGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYG-----LSDFGLARDLGIGRRE 729

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                   FE +    +    +            L G          R     +      
Sbjct: 730 AGGYIDRYFERYHGVRTFLDKIVADAHANGYVTTLYGR---------RRALPALASRNYM 780

Query: 524 LTEGFACVVQEGGSISA 540
                  +         
Sbjct: 781 QRSFAERMAMNTPIQGT 797


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/496 (14%), Positives = 141/496 (28%), Gaps = 105/496 (21%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L      + +RG +++ + + +  E +    K  +E+I K+      +      L
Sbjct: 563 EIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMAGEEF-NINSPKQL 621

Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
            + LF    +     ++    T   +L    +     + +LN    +       + L   
Sbjct: 622 GVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQVAKLKSTYTDGLEGY 681

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           V  DGR+   L     + TGR S      QN+P                           
Sbjct: 682 VKEDGRIHCKLNQLV-TATGRLSSTEPNLQNIP------------------------IRM 716

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R   +   G   V AD + IE R++A ++G++  IKA+   EDI+  T +  F 
Sbjct: 717 ELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRITASHVFG 776

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
            P+D+V+  QR   K +   + Y        +      L + +          F+ + Q 
Sbjct: 777 VPLDEVTDLQRRNAKAVNFGIIYG-----ISSFGLGENLGISRKDAEKYINDYFKAYPQV 831

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
           + +   + +   E        G    +           +        +    +       
Sbjct: 832 KKYLDSLVETGIEKGFVKTYFGRIRPI---------PELNSNNFMKRQFGERIAMNSPVQ 882

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                A++ ++ M      +    P SR L                              
Sbjct: 883 GTA--ADIIKIAMNSVNARLKSEFPDSRLL------------------------------ 910

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSW 657
                                           E++ E  +    +V   L   M K    
Sbjct: 911 ----------------LQIHD-----------ELLIEAKEEDKEAVAKLLKEEMMKAAE- 942

Query: 658 AKGLPLKAEGYEAKRY 673
              + L  +      +
Sbjct: 943 -LKVKLSVDVKFGYNW 957


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/655 (14%), Positives = 186/655 (28%), Gaps = 141/655 (21%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           +        + +   ++L+ E    + H    E +     + +D+       T +     
Sbjct: 409 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 466

Query: 104 --GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                + SLK A             +  +  +        + P     R   +       
Sbjct: 467 QPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLRDLAIIRSLAVT 526

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                D    RE    +  +   E  +  +   +   G ++D   ++ +++  A E ++ 
Sbjct: 527 LGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQA 580

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-------- 268
            E   +     I + +    L+  LF   G+     ++     T  + L           
Sbjct: 581 QEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNE 639

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQP 327
                   L+ +R  +    I  + TL +A + SD R+  T +   A  TGR S      
Sbjct: 640 RANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-ATGRLSSVDPNL 696

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEA 386
           QN+P                            A   +R   +   G + L+  D + +E 
Sbjct: 697 QNIP------------------------NRNAAGREIRGVFVPGEGYEALMSCDYSQVEL 732

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y     
Sbjct: 733 RIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG---- 788

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
              T                                          A + K+     E +
Sbjct: 789 -LSTYGL---------------------------------------AQQLKIAPREAEAL 808

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           K  +      V    + L                                         R
Sbjct: 809 KNRYFDTFGKVHDYLESLVANAREKGYTETIF--------------------------GR 842

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
           R  +  +         A  +               +Q  + DI+   M  A +       
Sbjct: 843 RRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMIRAEQTLAEAHV 893

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
              I+L +HDE+V E        V  L    M      A  +PL         ++
Sbjct: 894 KSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDWQ 946


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/668 (13%), Positives = 166/668 (24%), Gaps = 130/668 (19%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKT 83
           A  A     A A         D           LQ +L D+ V    H++          
Sbjct: 338 AGDAQTVTIAAA--GGASAHVDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHAL--- 392

Query: 84  LGIDIPSKRWICTS---VLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
           +G D+       T    + A           L          E        K L      
Sbjct: 393 MGRDLRLGGV--TMDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEV 450

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
              ++       A       +        ++   E       +++ E  L  +   +   
Sbjct: 451 DDAEAAQRAADAAATRARAVVD---LAERLDVELEQVHGATLMAEMELPLVPVLARMESI 507

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----- 252
           G  +D   +  L++  A   ++  E       G   +      L++ LF   G+      
Sbjct: 508 GIAVDASALNGLRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKT 567

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLIL---NRLASSGSAILKLNTLSEAVSSDGRLRG 307
                     L+ +L+        +  +        ++      +  L + +  D R+  
Sbjct: 568 KTGYTTDAKALEELLAKETGDTPGRAFLEALLLHRETTKMRTT-VEGLIKTIGDDRRIHT 626

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T     A  TGR S      QN+P                                +R  
Sbjct: 627 TFNQTVA-ATGRLSSTDPNLQNIP------------------------VRTEDGRRIRGS 661

Query: 368 IIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            +   G   L+ AD + IE RV+A ++G+   I+AF  GED++    ++AF  PID+V+ 
Sbjct: 662 FVVGEGYDCLLTADYSQIEMRVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTP 721

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           E R   K M   L Y               L + Q     +  + F  +     +   + 
Sbjct: 722 ELRRRVKAMSYGLAYG-----LSAFGLAAQLGISQGEAREQMEAYFSRFGGVRDYLQAVV 776

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
           +Q  +    + L G          R     +    +   E                    
Sbjct: 777 EQARKDGYTETLFGR---------RRYLPELNSDNRLKRENAERAALNAPIQGTAADII- 826

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                               +     V  D +     +                      
Sbjct: 827 --------------------KAAMLKVDADLTARGLKSRL-------------------- 846

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKA 665
                  +         +VL        E        V   +   M         +PL  
Sbjct: 847 -------LLQVHDE---LVL--------EVAPGELDEVRGLVVDRMYSAIE--LDVPLDV 886

Query: 666 EGYEAKRY 673
                  +
Sbjct: 887 STGTGPNW 894


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/663 (13%), Positives = 165/663 (24%), Gaps = 123/663 (18%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFK 81
                  +T    A   +     D TE        L     +     + H++       +
Sbjct: 333 WGRGTGDVTAVGLATAGDAAAYIDVTELDEDGEKALADWLADAARPKILHDAKGPMHALE 392

Query: 82  KTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCK 137
              G+ +       T++ A           L +     L       +   G+ L+     
Sbjct: 393 -ARGMPLRGVTM-DTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEHAGGQGLLDFDTD 450

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
             +            +       E  +               L D E  L  +   +   
Sbjct: 451 EEVVGQDAMVRARAVLDLSVPLSEQLEATGGTEL--------LRDIELPLVDILGAMERT 502

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LV 254
           G  +D D +  L+     + ++   D  +   G   +      L+  LF   G+      
Sbjct: 503 GIAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRT 562

Query: 255 DMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                T    L+          L  +L    +    +  +  L ++V+ D R+  T    
Sbjct: 563 KTGYTTDADALTDLYAKTQHPFLEAMLRHRDAMRLRVT-VEGLIKSVAEDQRIHTTYIQT 621

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            A  TGR S      QN+P                            A   +R   +   
Sbjct: 622 IA-ATGRLSSTDPNLQNVP------------------------IRTEAGRRIREVFVVGK 656

Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
           G + L+ AD + IE R++A ++G++  I+AF  GED++    A+ F    + V+ E R+ 
Sbjct: 657 GYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRSK 716

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K M   L Y               L +            F  +     +   +  +   
Sbjct: 717 VKAMSYGLAYG-----LSAFGLSKQLTISTGEAQGLMDEYFARFGGVRDYLREVVGEARA 771

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 ++G          R     +    +   EG   +        +           
Sbjct: 772 TGYTATMLGR---------RRYLPDLTSDNRQRREGAERMALNAPIQGSAADII------ 816

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                          +L    V          +                           
Sbjct: 817 ---------------KLAMKGVDSALRESGAKSR-------------------------- 835

Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEA 670
             +         +VL        E  +     V  L    M +       +PL       
Sbjct: 836 -MLLQVHDE---LVL--------EVAEGERDDVEALVRAEMGRAVE--MDVPLDVSVGLG 881

Query: 671 KRY 673
             +
Sbjct: 882 HSW 884


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 180/656 (27%), Gaps = 172/656 (26%)

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK------TLGIDIPSK 91
           D +    +  + +  +   +  + RDE          F++    +       LGI     
Sbjct: 363 DGDQANFYPFSSEEEVLKRMSAW-RDEGKAVWC----FDQTRLYRKCPRFFALGIPF--- 414

Query: 92  RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                ++ A           L+N       ++                            
Sbjct: 415 -VFDATIAAYLLEPGHRDYLLENLAARYFLTDTS-------------------------- 447

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             +  +  +        D          L  +   E  L  +   +   G RID   +  
Sbjct: 448 --DRPRLVRNVLSKLWEDAVKE----GLLELVQSIEIPLGRILYQMEVLGIRIDRQALES 501

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
            +E I    ++L+E+I +L             +   L+   G+           T +  L
Sbjct: 502 ARESIEALARELEEEIYRLAGSRFTIL-SPKQVGEILYGKLGLPTARKGKTGYSTDEETL 560

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +  +      + IL            ++ +S  V + GRL G       + TGR S    
Sbjct: 561 TGLSGLHPLPEKILAYRQMKKLLSTYVDPISRGVDAQGRLHGQFNQTV-TATGRLSSSNP 619

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                            A   +R C IA   + L+ AD + IE
Sbjct: 620 NLQNIP------------------------MRSPAGREIRKCFIAGENRVLLSADYSQIE 655

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA  + +   +  F   EDI+  T    F    D V+ E R   K +          
Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFG---DPVTPETRRKAKTIN--------- 703

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G+                                   ++   +     + 
Sbjct: 704 -----FGILYGMS------------------------------AFSLSLDLGVEPPEAQA 728

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               +      V  L+  + E      +    +                           
Sbjct: 729 FIDRYFGAFPKVGPLFDSILEEAKKTGEVRTIL--------------------------G 762

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGK-LTENIVQAISRDILCEGMKN---ATKNG 621
           R+    ++          ++   R R YG +     ++Q  + D++ + M +     K+ 
Sbjct: 763 RKRRIPEL----------SAPDRRSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812

Query: 622 ---YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               D+++ VHDE++ E  +        T+ SLM         +PL  +    K +
Sbjct: 813 PEVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA--LRLKVPLIVQVGHGKNW 866


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 95/704 (13%), Positives = 184/704 (26%), Gaps = 157/704 (22%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLF 75
            K  + A  E   +               D           L  +L DE    +      
Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKSTSLWIDTRTIDPELDAALAAWLSDEAARKIV----M 461

Query: 76  ERIL---FKKTLGIDIPSKRWICTSVLARTNGL---------PSSLKNACL-ALNFSEHL 122
           +  +     +  G ++        ++ +   G             +++     L   +  
Sbjct: 462 DLKVQRKLLRAYGYELAG-AVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKEP 520

Query: 123 TKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                    E +A  + F     ++ P D  R     +  +      R +    E   +L
Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPG-EAEPVDNLRYFTQISRIIHEL--ARLLHYEMEEHGQL 577

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE--------DIVKLTD 229
               + E  L  +   +   G  +   L+ +L +  +    +  E        ++     
Sbjct: 578 KVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATEDG 637

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHS----NITQLAKDLI 278
               +      L+  LF   G+               ++  +LS      +       L 
Sbjct: 638 EEPLNLASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGALA 697

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
             R     +    +  L +A + DGR+  T Q  GA+ TGR S      QN+P       
Sbjct: 698 AYRDNIKLAQT--VEGLQKAATEDGRVHTTFQQ-GAASTGRLSSTAPNLQNIP------- 747

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-------LVVADLAGIEARVLAW 391
                                    +R   I +           L+ AD + IE R++  
Sbjct: 748 -----------------IRTEEGRRIRGAFIVAPEPIDGVEYEGLLTADYSQIEMRIMVH 790

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  I A+  GED++    ++ F    + V+ EQR+  K M   L Y          
Sbjct: 791 LAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYG-----LSRF 845

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L++         T+ F+ + +       +  Q  +    + + G          R
Sbjct: 846 GLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGR---------R 896

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +    +   E                                        ++   
Sbjct: 897 RVLPDLDSPNRVRREAAERAALNAPIQGTAADII---------------------KIAMI 935

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           ++                                    L   M           L VHDE
Sbjct: 936 NIHRRLREEG----------------------------LKTRML----------LQVHDE 957

Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           I+ E       +    L   M+   S    +PL  +    K ++
Sbjct: 958 IILEVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 82/654 (12%), Positives = 167/654 (25%), Gaps = 156/654 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            + ++ +  +   ++         +   L    V+ + HN    R +F  T   +     
Sbjct: 327 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPAT---EKMLDS 383

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                +++ +                         GK   +     + +        +  
Sbjct: 384 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 421

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                      +   E    +++R          L  +   +   G  +++  + +L + 
Sbjct: 422 TLIAIHEKLKQRLFQEKLFTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 475

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKS 263
             Q    L+++I  L  G   +      L   LF   G+              +   L++
Sbjct: 476 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEA 534

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +             ILN    S       + L + V   DGR+  +      + TGR S 
Sbjct: 535 LEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA-TATGRLSS 590

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                              + +R   IA  G K++ AD +
Sbjct: 591 SNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADYS 626

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A      +AFAN +DI+  T  + F                         
Sbjct: 627 QIELRLLAHVANVAAFKEAFANEQDIHDITARQVFGV----------------------- 663

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                                   +         ++ +  +         A +  +    
Sbjct: 664 -----------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                  + + +  +    +                                     +  
Sbjct: 701 AAEYINYYFSCYPEIKVYMEKAVSIARLHGY--------------------------VET 734

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNG 621
              RR    D+     Y+        R             Q  + DI+         +  
Sbjct: 735 LFGRRCFVRDINNTIPYVRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQLK 785

Query: 622 Y-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              I+L VHDE++ E  D     +   +  +M         +PL+ E      +
Sbjct: 786 VGKIILQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNW 837


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/660 (13%), Positives = 172/660 (26%), Gaps = 146/660 (22%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-----FERILFKKTLGI 86
                                    L      E    +  +       ++     K LG 
Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143
               K      +        +           L       K+   K  I      S  + 
Sbjct: 394 SFQ-KPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKIVFAKQKIETLSIDSYGNF 452

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
               ++  +     L  +         +EL   L    + E  L  +  ++  +G +ID 
Sbjct: 453 LLKRSQILYSCLDSLEKDLK------EKELENVLW---ETELPLIPVLASMEKQGIKIDR 503

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260
               K    + ++   L+++I K       +      L   LFL   +     ++    T
Sbjct: 504 KYFQKYSLELNEKLVLLEKEIWKEAGEEF-NINSPKQLGEILFLKLNLPTGKKTKTGFST 562

Query: 261 LKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              +L + +         +L     +      ++ + + V    R+       G + TGR
Sbjct: 563 DVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFGDRIHTCYHQIG-TVTGR 621

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+P                                +R   IA +G KL+  
Sbjct: 622 LSSSDPNLQNIP------------------------VKTEEGIRIRQGFIARDGWKLLSI 657

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + +E RVLA ++ ++  +KA+   +D++  T  K F                      
Sbjct: 658 DYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF---------------------- 695

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                +  +  + +       +  +  +         A +  + 
Sbjct: 696 ---------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGIS 734

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                   K +  ++  V Q   ++ E              +R+ +      R  K    
Sbjct: 735 VKDAAEYIKRYFEQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN--- 791

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618
                                     Q  R           +VQ  + +IL + M     
Sbjct: 792 --------------------------QAERMA------VNTVVQGTAAEILKKVMIKIYS 819

Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               K    ++L VHDE++ E  +      V TL + M       + + L+        +
Sbjct: 820 WLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 878


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 94/657 (14%), Positives = 189/657 (28%), Gaps = 120/657 (18%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFKKTLGID 87
            +   A+A  D      D T         L     +  +    H+         +  G  
Sbjct: 329 DLRAIAFATADGEGAYVDVTAMDQADDAALAAWLADPAIRKTGHDLKTPLHAI-RARGWV 387

Query: 88  IPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +       T++ A           L +  L     E  ++ + G   ++    G  +   
Sbjct: 388 LSGLAM-DTALAAYLVRPGQRTFELDDLALRYLHRELRSETDGGDGQLSLLD-GGAEGLE 445

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
               +   V+A  +F      + E  +    +   L++ E  L  +   +   G  +DL+
Sbjct: 446 QKEIQDELVKARAIFELAGALEKELEQIGGAK--LLAELELPLLEVITELEIAGVAVDLE 503

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TL 261
            +  L+        +  E+   +  G   +      L++ LF   G+     ++    T 
Sbjct: 504 QLTTLEAHYLSRVTQAAEEAYAVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTD 562

Query: 262 KSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
              L              +L    ++      +  L ++V+ DGR+  TL    A  TGR
Sbjct: 563 AEALQGLFEKTEHPFLQHMLEHRDATKLRTT-VEGLIKSVADDGRIHTTLLQTIA-ATGR 620

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378
            S      QN+P                                +R   +   G   L+ 
Sbjct: 621 LSSTEPNLQNIP------------------------VRTEEGRRIRDAFVVGEGFTELMT 656

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ ++  I+AF +GED++    ++AF+ P ++++ E R   K M   
Sbjct: 657 ADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPELRYRVKAMSYG 716

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           L Y               L +       +  + F+ +     +   +     +    + +
Sbjct: 717 LAYG-----LSAYGLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETV 771

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
            G          R     +    +   E      +      SA  +  V  L +      
Sbjct: 772 FGR---------RRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVH----- 817

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R LV + +K                                       +   
Sbjct: 818 --------RALVEAKLKSRI------------------------------------LLQV 833

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                         +V E  +     +  L    M     +A  +PL+      + +
Sbjct: 834 HDE-----------LVLEVAEGEKEQLEQLVREGMGSA--YALAVPLEVSVGYGRSW 877


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 85/640 (13%), Positives = 165/640 (25%), Gaps = 152/640 (23%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +       +   L D+++  + ++      L K                ++        
Sbjct: 368 ADNEWFTDIIFNLLTDQSIKKITYSLK---PLLKFYASRAQQITAIEDLELMNYALSAGL 424

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
             KN                              +                      +  
Sbjct: 425 PQKNL---------------------FEAVEKEATIEEAAKIVVGFIDLY-------QQT 456

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  K      + +  +  +   +   G ++D + + +L      E  KL+E+I  L
Sbjct: 457 ILELKDNKAFRIYKEIDLPVCFVIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVL 516

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNIT-QLAKDLILNR 281
           +     +      L   LF    +     S       T   IL   +       DL+L  
Sbjct: 517 SGMKF-NIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRW 575

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +       ++L + + +  R   T     ++ TGR S      QN+P          
Sbjct: 576 RQLTKLKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVP---------- 625

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                               + +R   +A  G KL+ AD + IE R+L+ IA      +A
Sbjct: 626 --------------IRSGEGNKIRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQA 671

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F N +DI+  T  + FN   ++++ E R   K +                    G+    
Sbjct: 672 FINKDDIHTQTACQIFNLQKEELTSEHRRKAKAIN--------------FGIIYGIS--- 714

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A +  +  T      K + A+++GV +  
Sbjct: 715 ---------------------------AFGLAKQLNVSNTEAAEYIKKYFAEYKGVQEYM 747

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +                                           R+     +        
Sbjct: 748 EATKSFAQANGYVTDFF--------------------------GRKCFVPLINDKR---- 777

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635
                  R            +Q  + DI+   M          K    +VL +HDE++ E
Sbjct: 778 -LKQFAERAAINAP------IQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFE 830

Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            P     ++   +  +M    S    +P+  E      + 
Sbjct: 831 APIDEIETIMPIIKQIMEN--STNMDVPIITEIRAGNNWM 868


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score =  229 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/656 (11%), Positives = 175/656 (26%), Gaps = 138/656 (21%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
                + + E          S     L +  +D+ V   A+N         +     +  
Sbjct: 351 LGFGIS-NKEKNYYIPAAIISDKADFLKK-FKDKNVN--AYNIK-------ELFKSGLEY 399

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM---EEGKALIARFCKGSIDSPPYDC 147
           K +    ++    G  ++             +         K  +    +   +  P   
Sbjct: 400 KDYFDIMLVWYVLGTEAAQD-------LESIIFSEFQVLLEKYEVEFKKQNMDEVSPERK 452

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                 +++ +             E    +    +    L  +   +  +G  ID D   
Sbjct: 453 AEFLTKRSYYMTRLKEILGHRLEAEGLNNVYENIEK--KLVPVLADMEKKGILIDPDYFG 510

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263
           K    +     +++++I  L      +      L   LF    +D V  ++      ++ 
Sbjct: 511 KYGNELKNNLAEIEKNIYGLAGEEF-NINSPKQLSEILFEKMMLDPVKKTKTGYSTDVEV 569

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +   +       + IL     +      +  L +   S+ R+  T    G + TGR S  
Sbjct: 570 LEVLAAQGVEVAEKILEYRGYTKLLTTYVEPLPKLADSENRIHTTFHQNG-TATGRLSSS 628

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                                +R   ++  G   +  D + 
Sbjct: 629 NPNIQNIP------------------------VKTDEGIKIRRGFVSEEGWSFISFDYSQ 664

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++ ++  I A+   +D++  T  K F    ++                    
Sbjct: 665 IELRVLAELSEDETLILAYQKDKDLHDLTARKLFFKTDEEP------------------- 705

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                                    +       +  +  +         + + K+     
Sbjct: 706 ------------------------VSREERSIAKVINFSILYGKTPFGLSKELKIPMGDA 741

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +L    +  ++  V      + +              RR                     
Sbjct: 742 KLYINKYFEEYPRVRTFLNSVLQEAKLNGFVETLYGTRRY-------------------- 781

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----T 618
                         + +N++   +  +          +VQ  + +I+   M         
Sbjct: 782 -------------ITGINSSNKNIEAQA--DRMAVNTVVQGTAANIIKIVMVKLYEEFKD 826

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           K   +++L VHDE++ E  +      +  + ++M       K + L A G   K +
Sbjct: 827 KEDINMLLQVHDELIFEVKNESVDKYLKEIDNIMENTIKL-KNVRLAANGNVGKNW 881


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score =  229 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 87/697 (12%), Positives = 177/697 (25%), Gaps = 159/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           +  D ET +           YA    +   + +  +      D           L + L 
Sbjct: 161 IAFDSETSAL----------YARDGYLLGVSMSHQEYQGVYIDSDSITEVAVHYLQKILD 210

Query: 63  DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114
            +    V HN  F+   +   LG+        +R   T +             LK+    
Sbjct: 211 SKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  ++  +      L                  +  +  + +   Y  +D +AT  L 
Sbjct: 271 YTDMGDYDFE------LDKFKEDYCKAHKIKKEDFSYDLIPFDIMWPYAAKDTDATLRLH 324

Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +P  +    L  L            Q + DRG  I +D + + Q  +     K  E 
Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQYQLTHNLNKAREK 384

Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270
           +         +       +      LR+ LF   G+          ++ T    L+    
Sbjct: 385 LYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTNAEALNELAT 444

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +      +  +  ++ +DG +R     +  +     S      Q L
Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR E                             ++ C++A  G +++  DL   E    A
Sbjct: 505 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 537

Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438
            ++G+    + F N         D +       F    +           R   K +   
Sbjct: 538 VLSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAITFG 597

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G            ++     Q  K+   F                        + 
Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  +   + +      +                                
Sbjct: 630 TVADAKDYIETYFGQFPQLKRWIDKCHDQIK--------------------------NFG 663

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I     R+    ++  +   +     +              I+Q+ S D L  G  +A 
Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAIDAD 714

Query: 619 K--------NGYDIVLTVHDEIVSETPDTPYFSVGTL 647
           +            IV+ VHD +V+   +        +
Sbjct: 715 EEILSLGLGKEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score =  229 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 79/533 (14%), Positives = 157/533 (29%), Gaps = 136/533 (25%)

Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             L +   P+ +           E  +  +   +   G  +D   +  + +  A +  + 
Sbjct: 547 LALHQLFYPVLEKRQEISLLKDIELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQA 606

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKD 276
           +  I     G   + +    L+  LF   G++    ++     T  + L    I  +  +
Sbjct: 607 E-HIAWDQAGKQINLQSPKQLQAVLFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNE 665

Query: 277 L-------ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                   +L     +    +    +    +SDGR+  T +   A  TGR S      QN
Sbjct: 666 RANTFLGALLRHREVNKLKQIVQTLMDSVNTSDGRIHTTFEQTVA-ATGRLSSTDPNLQN 724

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARV 388
           +P                           +    +R+  + S+G   L+ +D + +E R+
Sbjct: 725 IP------------------------NRNVEGREIRAAFVPSDGYLSLLSSDYSQVELRL 760

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M   L Y       
Sbjct: 761 MAHLSGDEALIEAFRSGADFHKYVASLVYQVPLDQITPDQRSHIKAMSYGLAYG-----L 815

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
            T                                          A +  +     + +K 
Sbjct: 816 STYGL---------------------------------------AQQLGISPAQSDQLKA 836

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            + +    V    + L                                         RR 
Sbjct: 837 KYFSTFGKVHDYLESLVSQAKKRGYTTTMF--------------------------GRRR 870

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG--Y 622
            + D+      L  A  +               +Q  + DI+   M        + G   
Sbjct: 871 YFPDLLSSRRQLRDAAQRA---------ALNAPIQGSAADIMKIAMNKAATSLDEAGVKS 921

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
            I+L +HDE+V E        V  L    M +    A  +PL         ++
Sbjct: 922 RIILQIHDELVVELASGEEEEVTALVKNAMEEAVELA--VPLDVSTGIGSDWQ 972


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score =  229 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 104/678 (15%), Positives = 198/678 (29%), Gaps = 156/678 (23%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A +  CA A       + +    S++ + L ++L+ E    + H    E +      G+ 
Sbjct: 395 AHVQACAVAT-ASSAAIIEAPMASSVQTALDRFLKAEHFRTIVHGYK-ELLHLLSAAGLG 452

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T +                 LN +                     + P    
Sbjct: 453 MAL-PMFDTKLGGYLAQP----DFHADNLNQAAEHFLDI---------HVVDAEQPAQGV 498

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDR 197
              +     +   E    D+   REL   L P+ D           E  +  +   +   
Sbjct: 499 LDFDDEHTEEDLNERRVHDLAVIRELAVTLGPVIDERRQYWLMRAIELPVSRVLHGMEQS 558

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G +ID   +  +++  A + ++  E   +   G I + +    L+  LF+  G+     +
Sbjct: 559 GAKIDRSRLTDMRDRFAADARQAQEMAWQYAGGEI-NLQSPKQLQKVLFVDMGLKPTKRT 617

Query: 258 E----GTLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS-DGR 304
           +     T  + L +  I  +  +        L+ +R  +    I  + TL +A +  D R
Sbjct: 618 KNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRETNKLKQI--VQTLIDATNKADER 675

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  T +   A  TGR S      QN+P                                +
Sbjct: 676 IHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAVGREI 710

Query: 365 RSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           RS  +   G + L+  D + +E R++A ++G++  I+AF +G D +    +  +  P+D+
Sbjct: 711 RSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQ 770

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++ +QR+  K M   L Y        T                                 
Sbjct: 771 ITGDQRSHVKAMSYGLAYG-----LSTYGL------------------------------ 795

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                    A +  +     E +K  +      V    + L                   
Sbjct: 796 ---------AQQLNIAQREAEALKNRYFDTFGKVHDYLESLVATAREKGYTETIF----- 841

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 RR  +  ++        A  +               +Q
Sbjct: 842 ---------------------GRRRYFPALRSTNRMARDAAERA---------ALNAPIQ 871

Query: 604 AISRDILCEGMKN----ATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPS 656
             + DI+   M        + G    I+L +HDE+V E        V  L    M     
Sbjct: 872 GSAADIMKIAMIRAGQALDEAGVKSRIILQIHDELVVEIAPGESEQVTELIRNAMEHAVD 931

Query: 657 WAKGLPLKAEGYEAKRYR 674
            A  +PL         ++
Sbjct: 932 LA--VPLDVSCGIGSDWQ 947


>gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 881

 Score =  229 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 87/662 (13%), Positives = 175/662 (26%), Gaps = 147/662 (22%)

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89
           A+AW ++          S  P  L Q L  + +   +     ++     +    LG++I 
Sbjct: 341 AFAWGNQETIYV-----SQNPDLLRQPLFTKVLEKPI---LTYDFKRTKVLLSHLGVEIS 392

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              +                      L  +    ++     L       S ++      +
Sbjct: 393 EAAFD---------------ARLANYLLSNVDDNELATIARLHTSISLESDEAVYGKGVK 437

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYR 200
                   LF    ++           L  L++          E  L  +   +   G +
Sbjct: 438 RAFPAKDLLFAHLARKVAVLATSKPVMLEKLAENGQSDLYYKIELPLANVLAKMEIAGIK 497

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVD 255
           ++   ++++ E        L ++I  L      +      L   LF    +         
Sbjct: 498 VNKLTLMEMAEQNRNIIDALTQEIYDLAGEEF-NINSPKQLGSILFEKMQLPLTMTKKTK 556

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
               T   +L            IL+    +      L  L + +  DG++         +
Sbjct: 557 TGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQDYIMEDGKIHTRYVQ-DLT 615

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374
           +TGR S      QN+P                                +R     S +  
Sbjct: 616 QTGRLSSTDPNLQNIP------------------------IRMEQGRLIRKAFTPSSDDW 651

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGK 433
            L+ +D + IE RVLA I+G++  I AF +  DI+  T  + F    +  V+   R   K
Sbjct: 652 LLLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAK 711

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +   + Y               L + +        + FE +   + +   +  +  +  
Sbjct: 712 AVNFGIVYG-----ISDFGLSNNLGISRQKARDYIDTYFERYPGIKKYMDAVVREAKDKG 766

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMR 552
             + L     EL           +     ++        +      SA  +  +  + + 
Sbjct: 767 YVETLFKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLD 817

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
           +   D                                                      +
Sbjct: 818 KALVDGEFK-------------------------------------------------AK 828

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
            +         IVL        E P     +V  L   +M      A  +PL+A+    +
Sbjct: 829 MLLQVHDE---IVL--------EVPKQELAAVRQLVKEIMEDAVDLA--VPLRADENSGQ 875

Query: 672 RY 673
            +
Sbjct: 876 SW 877


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/762 (13%), Positives = 208/762 (27%), Gaps = 191/762 (25%)

Query: 2   SKLFIDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA- 52
           S++ ID+ET    P      + K  + AY  ++Q  I     +             +   
Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266

Query: 53  --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
                   +   L + L  E +  +AHN  F+    + +L I +    W  T ++     
Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIID 324

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                 +    L + E          +         + P  +      +  W +   Y  
Sbjct: 325 YRGERYSWSKRLAWLET--------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLA 376

Query: 165 RDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
            D + T  L ++ IPL +                +     I   G  +D + +  L+   
Sbjct: 377 DDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSY 436

Query: 214 AQERKKLDEDIVKLTDG------------------------------------------- 230
            +E  +L++ + +  +G                                           
Sbjct: 437 EKEISRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSK 496

Query: 231 --IIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                +   T  L   LF   G++        +  T    L           +++     
Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRNG 556

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  +     
Sbjct: 557 NHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNF 615

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           +      +                   +G  +V  D + +E R+L       + I  + +
Sbjct: 616 EIKKMFNSRFG----------------DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++    + AF   I++VSK+QR   K ++  + YQ  A+         G+       
Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +    CE+  K +  +   V +  +D 
Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            +    +        A R       + +    +                           
Sbjct: 741 KKHVKDISTVKTLTGATRNLPDIDSIDQSKANE--------------------------- 773

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
               R+           +Q    D     +    +          I +TVHD IV + P 
Sbjct: 774 --AERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825

Query: 639 TPY-FSVGTLCSLMTKNPSWAK------GLPLKAEGYEAKRY 673
                    +  +M     + +       +P+ +E    + Y
Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNY 867


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/615 (14%), Positives = 182/615 (29%), Gaps = 140/615 (22%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140
           G+++  +    T +                     L+      + E        F +   
Sbjct: 445 GVEL-PEPLFDTKLAGYLAHPDFHADTLEQVAAHFLDL-HIEAQAEAATQGTLDFDEPEE 502

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           +    D           L  EY        +     L+     E  +  +   +   G +
Sbjct: 503 NDSKNDELILTRTAIVGLLAEYLA--GVLDKREQFGLLKSI--ELPVSQVLHGMEQVGAQ 558

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
           +D+  ++++++ +A +  +  ++      G   + +    L+  LF   G+     ++  
Sbjct: 559 VDMARLVQMRDQLAADAAQ-AQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPTKKTKSG 617

Query: 260 ---TLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
              T  + L              Q    L+++R  +    I  + TL +A +  DGR+  
Sbjct: 618 SYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHT 675

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T +   A  TGR S      QN+P                            A   +RS 
Sbjct: 676 TFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPAGREIRSA 710

Query: 368 IIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            +   G + L+ +D + +E R++A ++G++  I+AF +G+D +    +  +  P+D ++ 
Sbjct: 711 FVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITS 770

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +QR+  K M   L Y        T                                    
Sbjct: 771 DQRSHVKAMSYGLAY-----GLSTYGL--------------------------------- 792

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 A + K+     E +K  + A    V +  + L                      
Sbjct: 793 ------AQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIF-------- 838

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RR  +  +K     +  A  +               +Q  +
Sbjct: 839 ------------------GRRRYFPGLKSPNRAVRDAAERA---------ALNAPIQGSA 871

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
            DI+   M  A         G  ++L +HDE+V E           L    M    + A 
Sbjct: 872 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA- 930

Query: 660 GLPLKAEGYEAKRYR 674
            +PL         ++
Sbjct: 931 -VPLDVSTGIGSDWQ 944


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/641 (14%), Positives = 177/641 (27%), Gaps = 132/641 (20%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111
           + L  +L DE+     H   +      +  G  +       T++ A          +L +
Sbjct: 362 AALADWLADESRPKAVHEVKWALHAL-RGRGWTLTGVT-SDTALAAYLVRPGQRTFNLDD 419

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             L     E   +   G            D+           QA     +    D E  R
Sbjct: 420 LALRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQAVAELAD--TLDTELER 477

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L  L + E  L  +   +   G  +D+D +  L+   AQ  +   E   ++  G 
Sbjct: 478 IDSSAL--LQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAYEVI-GE 534

Query: 232 IRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLAS 284
             +      L+  LF    +                L S+   +    L    +L    +
Sbjct: 535 QVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFL--KHLLEHRDA 592

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +   +  +  L + V+ D R+  T     A  TGR S      QN+P             
Sbjct: 593 TRLRVT-VEGLQKTVADDQRIHTTFNQTVA-ATGRLSSTDPNLQNIP------------- 637

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKK-----------LVVADLAGIEARVLAWIA 393
                          A   +R   + + G             L+ AD + IE R++A ++
Sbjct: 638 -----------VRTEAGRQIRHAFVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLS 686

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            ++  I+AF  GED++    ++AF  P+D+V  + R+  K M   L Y            
Sbjct: 687 EDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYG-----LSAYGL 741

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L + +     +  + F+ +     +   + ++         L G          R  
Sbjct: 742 AAQLGISREEAKQQMEAYFDRFGGVRDYLHRVVEEARRNEYTATLFGR---------RRY 792

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +        +    +            A++ ++ M   ++ +     SSR L     
Sbjct: 793 LPDLNSDNFQRRQSAERMALNAPIQGTA--ADIIKVAMINVQKRLRTEQLSSRML----- 845

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633
                                                                     +V
Sbjct: 846 -----------------------------------------LQVHDE-----------LV 853

Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       +V  L    M         +PL+      + +
Sbjct: 854 IEVATGEQAAVEALVREEMGGAID--LSVPLEVSVGYGRSW 892


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/654 (12%), Positives = 167/654 (25%), Gaps = 156/654 (23%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            + ++ +  +   ++         +   L    V+ + HN    R +F  T   +     
Sbjct: 286 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPAT---EKMLDS 342

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                +++ +                         GK   +     + +        +  
Sbjct: 343 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 380

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                      +   E    +++R          L  +   +   G  +++  + +L + 
Sbjct: 381 TLIAIHEKLKQRLFQEKLFTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 434

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKS 263
             Q    L+++I  L  G   +      L   LF   G+              +   L++
Sbjct: 435 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEA 493

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +             ILN    S       + L + V   DGR+  +      + TGR S 
Sbjct: 494 LEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA-TATGRLSS 549

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                              + +R   IA  G K++ AD +
Sbjct: 550 SNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADYS 585

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R+LA +A      +AFAN +DI+  T  + F                         
Sbjct: 586 QIELRLLAHVANVAAFKEAFANEQDIHDITARQVFGV----------------------- 622

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                                   +         ++ +  +         A +  +    
Sbjct: 623 -----------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 659

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                  + + +  +    +                                     +  
Sbjct: 660 AAEYINYYFSCYPEIKVYMEKAVSIARLHGY--------------------------VET 693

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNG 621
              RR    D+     Y+        R             Q  + DI+         +  
Sbjct: 694 LFGRRCFVRDINNTIPYVRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQLK 744

Query: 622 Y-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              I+L VHDE++ E  D     +   +  +M         +PL+ E      +
Sbjct: 745 VGKIILQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNW 796


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/642 (13%), Positives = 158/642 (24%), Gaps = 126/642 (19%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D TE           +L D     V HN+     +F +  G  I       T++ A  
Sbjct: 374 WFDPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 431

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    L       L               +A       ++          +   + 
Sbjct: 432 VKPGRRSFDLDALTLEYLGRELAPP--AAADGQLAFGADEEAEADALMVQARAILDLGEA 489

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           F    K    A          L D E     L   +   G   D   +  ++++ A   +
Sbjct: 490 FTGRLKEVGAADL--------LGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQ 541

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273
           +   +          +      L+  LF   G+     ++    +               
Sbjct: 542 QAVREAHAAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENE 600

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              ++L     +   +  +  L + +++DGR+  T     A  TGR S      QN+P  
Sbjct: 601 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 656

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392
                                         +R   +   G + L+ AD + IE RV+A +
Sbjct: 657 ----------------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHL 694

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + +   I+AF +GED++ T  ++ F      V  E R   K M   L Y           
Sbjct: 695 SEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYG-----LSAFG 749

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L ++         + FE +     +   + ++         L G          R 
Sbjct: 750 LSQQLGIEAAEARTLMEAYFERFGGVRDYLRRVVEEARATGYTATLFGR---------RR 800

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
               +    +   E    +                             +L     L    
Sbjct: 801 YLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI------------AMLRVGEALR--- 845

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                                            +  +    +                EI
Sbjct: 846 ---------------------------------AAGLASRMLLQVHD-----------EI 861

Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
           V E        V  L    MT         PL       + +
Sbjct: 862 VLEIAPGERERVEALLRREMTTAVHLKA--PLDVSVGVGRDW 901


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 209/393 (53%), Gaps = 19/393 (4%)

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L     +LTD  ++++ Q  AL  ++    GI L DM   TL+  ++  +I    ++L+
Sbjct: 3   RLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELL 62

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
             RL S  ++  K   L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR      
Sbjct: 63  SVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPN 122

Query: 339 ILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
            +   I+AL  G       D + L S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE
Sbjct: 123 TIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGE 182

Query: 396 DWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           +WK+KAF+  ++      Y   YA+AFN   + V+K+QR IGKVMEL LGY GG   F T
Sbjct: 183 NWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLT 242

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            A   GLDL + ++            +A S +    +    + + +K+    C+ +K+ W
Sbjct: 243 FALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMW 301

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R  H   +  W D+ +     +Q  G           +L +RR K  + I LPS R L Y
Sbjct: 302 RNAHPQTVSFWYDIEDAVKQAIQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCY 356

Query: 571 SDVKGDC---SYLNT--ATSQLMRERTYGGKLT 598
              + +    +Y+ T   + +  R +TYGGKL 
Sbjct: 357 PSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI Q+ +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/661 (13%), Positives = 186/661 (28%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            I   A+ ++ +        E          + +   + L+   +  + H+        K
Sbjct: 348 EILALAFLFECQ-GYFLPLEEALFSPFSLEFLQNAFSKMLQHACI--IGHDLKPLLSFLK 404

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + +     T +LA                 L       +       I  F   S
Sbjct: 405 AKYQVSLENIHIQDTQILAFLKNPEKVGFDEVLKEYLK------EDLILHEKIKDFKTKS 458

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                        + A +   EY +++          L    + E     +   +  +G+
Sbjct: 459 KAEKLERLNVE--LNALKRLCEYFEKEGLEE----DLLSLAKEIEMPFMKVLMNMEFQGF 512

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E K L+  I+ L      +      L   L+    +   + S  
Sbjct: 513 KIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQLSGVLYEKLNLP-KNKSHS 570

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +  +   +  L      D ++  T    G + TGR
Sbjct: 571 TDEKNLLKIMDKHPSIPLILEYRELNKLSNTYITPLLRLKDKDDKIHTTFIQTG-TATGR 629

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   I+S     L+ 
Sbjct: 630 LSSHSPNLQNIP------------------------VRSSKGLLIRKGFISSSKEYCLLG 665

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F    +  +KE+R+I K +   
Sbjct: 666 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG---ENSAKEKRSIAKSINF- 721

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 722 -------------GLVYGMGS------------------------------KKLSETLNI 738

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +     ++ E      +    +   RV +   +        +
Sbjct: 739 PLNEAKSYIEAYFKRFPSIKDYLNNMQEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYL 798

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 799 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 822

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +A  +PL+   + AKR
Sbjct: 823 ERFKNDSSVRLLLQVHDELIFEIEEKNALELQQEIQRILNNEV-YALRVPLETSAFIAKR 881

Query: 673 Y 673
           +
Sbjct: 882 W 882


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/692 (13%), Positives = 187/692 (27%), Gaps = 161/692 (23%)

Query: 28   AVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
            A   +   A     +   D  +   A+   L ++L+  + + V H+         K LG+
Sbjct: 436  ADCLIILIANKAAILYTTDLQSSDQALLEMLRKFLQKNSSITVLHDYK-------KHLGL 488

Query: 87   ----------DIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIA 133
                      +      + T + +          +L+N            +   G+    
Sbjct: 489  LKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHY-LDIQSDEDNLGENEAK 547

Query: 134  RFCKGSIDSPPYDCTRANHVQA-----WQLFGEYCKRDVEATRELFKRLIP------LSD 182
            +     +       +     +         F                 L        ++D
Sbjct: 548  QGELDLLIDDGMPASEEETNEKQTQACEAKFLRTTLLIRLLALHFASTLDDRKQTGLMTD 607

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  +  + + + D G  +D+  +  + +  + +  +  +++     G   + +    L+
Sbjct: 608  LEMPISRVLRGMEDVGAAVDMQRLSSMLKQFSAD-AEFAQNMAWKVAGSSVNLQSPKQLQ 666

Query: 243  MYLFLITGIDLVDMSE----GTLKSILS--------HSNITQLAKDLILNRLASSGSAIL 290
              LF   G+     ++     T    L             +Q    L+ +R  +    I 
Sbjct: 667  QILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI- 725

Query: 291  KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             + +L +A   D R   T      + TGR S      QN+P                   
Sbjct: 726  -VQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIP------------------- 765

Query: 351  ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                     A   +R+  I     + L+  D + +E R++A  + +   I+AF +G D +
Sbjct: 766  -----NRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGVDFH 820

Query: 410  VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                +  +  P+++VS +QR+  K M   L Y        T      L            
Sbjct: 821  KYVASLVYKIPVEQVSPDQRSHVKAMSYGLAYG-----LSTYGLAKQLS----------- 864

Query: 470  STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                        +     E++K  +      V    + L     
Sbjct: 865  ----------------------------ISPAEAEMLKNKYFDTFGNVHDYLESLVSKAK 896

Query: 530  CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
             +                                  RR  +  +  +      A  +   
Sbjct: 897  ELGYTETMF--------------------------GRRRYFPQLSSNNRASREAAERG-- 928

Query: 590  ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643
                        +Q  + DI+   M          K    ++L +HDE++ E        
Sbjct: 929  -------ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQAQ 981

Query: 644  VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674
            V  +    M         +PL         ++
Sbjct: 982  VENIVRKAMENAVH--LDVPLNVSTGVGVDWQ 1011


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/597 (18%), Positives = 179/597 (29%), Gaps = 139/597 (23%)

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +P   W    + A     P S   A   L                + F   S+D+     
Sbjct: 416 VPLAVWFDLGLAAYLLN-PESRAYAFDRLR--------------DSLFADPSVDTEGVSP 460

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           T      A        + +      L   L      E  L  +   +   G  ID     
Sbjct: 461 TDNARAAALLADVLAARLETAGLSRLVAEL------EMPLVPVLVAMERAGIGIDKTAFA 514

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKS 263
              + +A     L+ DIV L      + R +  L   L+   G+         +  T + 
Sbjct: 515 AFADEVAGRLAILETDIVALAGKPF-NPRSSQQLGEILYTDLGLKAHGKTPGGAASTSQD 573

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            L          D IL            L  +      D R+  TL    A+ TGR S  
Sbjct: 574 ALERLAGAHPLVDRILEFRKLEKLRSTYLAPMPALADRDSRIHTTLN-NMATATGRLSSS 632

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                          G     +R+C  A  G +LV AD + 
Sbjct: 633 NPNLQNIP------------------------IRGEFGRRMRACFTAGPGNRLVAADYSQ 668

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++GE   + AFA+G DI+  T A  F+ P + ++ ++R   K +        
Sbjct: 669 IELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTINF------ 722

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                 + +    +   A 
Sbjct: 723 --------GLLYGMGP------------------------------QKLSRDLGIKLDAA 744

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     +  +  G+   ++ + E                              D  +   
Sbjct: 745 KAFIARYFERLPGLSAFYEGIVEAAKR--------------------------DGFVTTL 778

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
           + RR +  D+    S     +SQ  R+          +VQ  + DI+   M  A  +   
Sbjct: 779 AGRRRLLPDIGSANS---QLSSQARRQAI------NTVVQGGAADIIKMAMLAAAGDAAL 829

Query: 624 ------IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 +VL +HDE++ ETP+         L  LMT   S A  +PL+ +    + +
Sbjct: 830 AGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLMTGVISLA--VPLEVDWGTGRTW 884


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 179/662 (27%), Gaps = 147/662 (22%)

Query: 33  CAYAWDDEPVKLWDRTE---------QSAMPSD---LLQYLRDETVMCVAHNSLFERILF 80
             ++ D   +   D T              P     +++ L D ++  + +N     I  
Sbjct: 346 ITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFL 405

Query: 81  KKTLGIDIPSKR-WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
              L  +I S        ++                            GK  ++      
Sbjct: 406 LNFLRTEITSASCIDDIMLMHYILS----------------------AGKNELSLNEIIQ 443

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRG 198
             +  Y    + H   W         D         K L    + +  +  + + I + G
Sbjct: 444 TYNKSYSEQYSEHKVCW----LKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNG 499

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----- 253
            +I++ L+  L   +  +   L++ I ++      +      L   LF +  +       
Sbjct: 500 IKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEF-NIASPKQLGEILFDVLKLPHAKVSQ 558

Query: 254 VDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
              S  T   +L + +   +   DL+L     +      ++TL   ++++     T    
Sbjct: 559 KTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQ 618

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
            ++ T R S      QN+P                                VRS  +A  
Sbjct: 619 TSTTTSRLSSHSPNLQNIP------------------------IRSEYGLKVRSAFVAPP 654

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G K++ AD + IE R+L++ A  +     F  GEDI+ +T A+ F    D+V++E R   
Sbjct: 655 GSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKA 714

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y               L++            F+++     +    +    E 
Sbjct: 715 KAINFGIIYG-----ISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEH 769

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +IG  C +           +                     S             
Sbjct: 770 GYVKNMIGRRCYI---------PLINSSNLTTRNFAQRAAINAPIQSTA----------- 809

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                  I +    +L+YS                                      +  
Sbjct: 810 --SDIAKIAMIQYEKLIYSKYPA----------------------------------IKL 833

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAK 671
            +                 +V E P+    +    + S M   P      PLK E     
Sbjct: 834 -LLQVHDE-----------LVFELPEELVDTACNLIKSTMENIP--YFSFPLKVELKIGD 879

Query: 672 RY 673
            +
Sbjct: 880 NW 881


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 100/591 (16%), Positives = 163/591 (27%), Gaps = 127/591 (21%)

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +P   W    + A                N+     +        + F   ++D+     
Sbjct: 406 LPLPTWFDLGLAAYLLNP--------EQRNYGFERLRD-------SLFADPAVDASDLSP 450

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                  A        + +     +L  R       E  L  +  ++   G  ID   + 
Sbjct: 451 ADTAKAAARLADLLASRLEAAGLSDLVAR------LELPLVPVLLSMERIGIGIDTAALA 504

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKS 263
                +A E  +L+  I +L  G   + R +  L   L+   G+         +  T + 
Sbjct: 505 AFGAEVATELARLEGAIRELA-GEGFNPRSSRQLGEVLYGRMGLKPRGKTPGGAASTSQE 563

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            L          D IL            L+ L     + GR+  T     A+ TGR S  
Sbjct: 564 ALERLAGENPLVDRILEFRKLEKLRSTYLDPLPRLADAAGRIHTTFNNL-ATATGRLSSS 622

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                          G     +R C +A+ GKKLV AD + 
Sbjct: 623 NPNLQNIP------------------------IRGTLGRRMRECFVAAAGKKLVAADYSQ 658

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE RVLA ++GE   + AF  G DI+  T A  F+     +  ++R   K +   L Y  
Sbjct: 659 IELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEADIRPDERRQAKTINFGLLYGM 718

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G +          L ++  +        FE      + +  + D          L G   
Sbjct: 719 GPQKL-----SRDLGIKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKAQGFVTTLAGR-- 771

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                  R     +      L                                       
Sbjct: 772 -------RRLLPEIHSANSQLASQARRQAINTVVQGGAADI------------------- 805

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
                                   M       +L       +        M         
Sbjct: 806 --------------------IKMAMLAAHNDPELA-----GLGA-----AM--------- 826

Query: 624 IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            VL VHDE++ ETP+    +    L +LM    + A  +PL  +    + +
Sbjct: 827 -VLQVHDELLLETPEAAAQAAGERLSALMCGVVALA--VPLAVDWGAGQTW 874


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 144/524 (27%), Gaps = 116/524 (22%)

Query: 161 EYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            Y   D+       K L  +  + E  L  +   +   G +ID          + ++   
Sbjct: 472 LYSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDRKYFEAYSLELTEKLAL 531

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL-AK 275
           L++ I +       +      L   LFL   +     ++    T   +L H +       
Sbjct: 532 LEKAIWEEAGEEF-NLNSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIA 590

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +L     +      ++ + +      R+       G + TGR S      QN+P    
Sbjct: 591 SNLLEYRKLAKLKNTYVDPIPKMTGEGDRIHTCYHQIG-TVTGRLSSSDPNLQNIP---- 645

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R   IA  G KL+  D + +E RVLA ++ +
Sbjct: 646 --------------------VKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKD 685

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
           +  +KA+   +D++  T  + F                                      
Sbjct: 686 ENLLKAYQEKQDLHSVTAKRIF-------------------------------------- 707

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                +  ++ + +       +  +  +         A +  +         K + A++ 
Sbjct: 708 -----ELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGISVKDAGEYIKRYFAQYP 762

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            V Q  + +                RR+ +      +  K                    
Sbjct: 763 RVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVK-------------------- 802

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVHD 630
                    SQ  R           +VQ  + +IL + M         K    ++L VHD
Sbjct: 803 ---------SQAERMA------VNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHD 847

Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ E  +         L   M +     + + L+        +
Sbjct: 848 ELIFEIQEGKLQEYEENLIRFMRETIQL-EEVELEVNTNIGDTW 890


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/491 (14%), Positives = 131/491 (26%), Gaps = 103/491 (20%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E+ L  +      RG  +D  ++ ++  +  Q+ + L   + +L      +  
Sbjct: 439 LSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEF-NLN 497

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               L   LF    +        T   +L            IL               L+
Sbjct: 498 SPKQLAEVLFDHLKLPTKKKR-STAVDVLEGLIEEHAIIAPILEYRKYQKLYSTYAVGLT 556

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + + +DG++  +   + A++TGR S      QN+                          
Sbjct: 557 KHIHADGKIHTSFNQH-ATQTGRLSSSDPNLQNI------------------------SV 591

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
               +  +R   +AS G  L+  D + IE RVL+++A E   ++AF  G DI+  T    
Sbjct: 592 RDEETRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAI 651

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F    D V+   R   K +   + Y               LD+         T   E + 
Sbjct: 652 FGV--DDVTSTMRRQAKSVNFGIVYGMS-----EYGLSKQLDITIPEARHFITRYNEIYP 704

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
               +   + +          L            R     +    + + +          
Sbjct: 705 NITKYMDSVVEDCLRDGYVKTLFNR---------RRYIPEIYDANRAVKDFGKRAAMNAP 755

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                         ++         +  N               
Sbjct: 756 IQGTAADII---------------------KIAMIKADELLTSNNY-------------- 780

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
                            M           L VHDE+V +  D     +  L  S+M    
Sbjct: 781 --------------KSSMI----------LQVHDELVFDVYDDELEQIQDLMVSVMEHIV 816

Query: 656 SWAKGLPLKAE 666
           SW   L +  +
Sbjct: 817 SWPIDLNVSVD 827


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/652 (13%), Positives = 174/652 (26%), Gaps = 135/652 (20%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E   I L   + ++ PV ++D      + +   L + L DE ++ 
Sbjct: 1258 YCGLDMETTGLEVFGE--KIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1315

Query: 69   VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
            +  N  F+          +        T + ++      ++         +  + K    
Sbjct: 1316 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLSV 1368

Query: 129  K-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                  +    +      +        +  L   Y K   +   E  +    ++D E   
Sbjct: 1369 YLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQI---VNDIENKC 1425

Query: 188  WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             L    +   G ++DL+ + K  + I  E     + + K       +      +   L  
Sbjct: 1426 ILPICDMELNGIKVDLENLNKSTDQILNELNVERDKLKKELKNEDINVNSQQQILKALQD 1485

Query: 248  ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306
                DL +            + I   A  L+ N              L   ++    ++ 
Sbjct: 1486 NNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAFYLKLPLHINKKTNKIH 1545

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
             T      + +GR+S      Q +PRQ                              +R 
Sbjct: 1546 TTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNIRE 1576

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
              I +     ++AD   IE ++ A I  ++  +KA+ N  D++  T +      I++++K
Sbjct: 1577 IFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINK 1636

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            E R + K +   L                                  ++    ++     
Sbjct: 1637 EDRHVAKAINFGLL------------------------------YGMNYVNLRTYANTY- 1665

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                      K+    C     ++   ++G+ +                 S  + R    
Sbjct: 1666 -------YNVKMNLDQCLYFYNSFFEHYKGLSRWH----NIVKQTKALEYSTLSNRKVVF 1714

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
            P                                                K     VQ   
Sbjct: 1715 PYFSFT-------------------------------------------KALNYPVQGTC 1731

Query: 607  RDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653
             DIL   +    KN       I+L VHDEI+ E            L   M  
Sbjct: 1732 ADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALRILVESMEN 1783


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 95/678 (14%), Positives = 175/678 (25%), Gaps = 157/678 (23%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           L + + D       D T    +P D   L + L D     +  ++           G+ +
Sbjct: 387 LVSLS-DGSRAVAIDLT--EILPEDETVLARLLADVERPKLVADAKGSWHALS-ARGLTL 442

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                   S+                + +      +                D    +  
Sbjct: 443 DGV-IADPSLAGYLCRPEQ------RSYDVETLTQRWLGIDLAAVNEGSAGGDGGSGESQ 495

Query: 149 RANHVQAWQLFG------------------EYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            A  ++A                            D +        L   +D E  +   
Sbjct: 496 SAFDLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLF--TDLEMPVAAT 553

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              + D G  +D  ++   Q  +        E         + +      L+  LF    
Sbjct: 554 LTVMEDAGIAVDDAVLHARQTELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELK 612

Query: 251 IDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
           +     ++    T    L+           + L+ +R A        +  L +A+ +DGR
Sbjct: 613 MPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQADGR 670

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +  T Q   A  TGR S      QN+P                                +
Sbjct: 671 IHTTFQQTIA-ATGRLSSTDPNLQNIP------------------------ARHEEGMRI 705

Query: 365 RSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R       G   L+ AD + IE R++A ++ +   I+AF +GED++    A      ++ 
Sbjct: 706 REAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLHRYVAALVHGIEVED 765

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+ +QR+  K M   L Y        T                                 
Sbjct: 766 VTAQQRSHVKAMSYGLAY-----GLSTFGL------------------------------ 790

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                    A +  +       ++ A+ A+   V    + + E                 
Sbjct: 791 ---------ARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMF----- 836

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                 RR    D+  D         +               +Q
Sbjct: 837 ---------------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQ 866

Query: 604 AISRDILCEGMKNATKNG------YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPS 656
             + DI+ + M +             I+L +HDE++ E       +V   L   M     
Sbjct: 867 GSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEAVENLLKEQMGGAAE 926

Query: 657 WAKGLPLKAEGYEAKRYR 674
               +PL       + +R
Sbjct: 927 --LSVPLDVAVGRGRTWR 942


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 99/693 (14%), Positives = 178/693 (25%), Gaps = 163/693 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L++D ET                   I L     DDE   + D  E   +   L + + 
Sbjct: 24  YLYLDTETTGN---------------RIRLVQLG-DDEKTYVIDLYEIHDITP-LRELIS 66

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNA-CLALNFSE 120
           ++ V  + HN  F+           I       T + +   G    SL +     L ++ 
Sbjct: 67  EKGV--IGHNLKFDLHYLMNY---QIEPLATFDTMIASFLLGYERHSLNHLVGNLLGYTL 121

Query: 121 HLTKM-------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             +             A +    K           +   +          +     T  +
Sbjct: 122 DKSYQLSDWGAPVLSDAQLKYAAKDVDVLRELFP-KLRDMLNELEGERGEELLKTRTARI 180

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           F    P++  E         +   G  +D++ +    + I ++     + + +       
Sbjct: 181 FGLKSPVAIVEMAFVKEVAKLERNGLPVDIETLESTLKDIERKT---QKKVQEFLIKFRV 237

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                  +   L     ++L    +    T   +LS     +  + L+  R      +  
Sbjct: 238 DPFSPKQVGQLLTSKYKLNLPRTQKGNVSTDDKVLSSYAHVEPVRLLLEIR-KLKKLSDK 296

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
                        RL    +  GA  TGR S      QN+PR+E                
Sbjct: 297 FKEIKENL--KGDRLYPEFKQIGA-VTGRMSSLKPNVQNVPREE---------------- 337

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         R+   A  G   V+AD + IE R+ A    E+  I+AF  G+D++ 
Sbjct: 338 --------------RAIFKAPEGNTFVIADFSQIELRIAAEYVNEELMIRAFREGKDLHR 383

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T +       ++++KE+R + K +   L Y   AK     A                  
Sbjct: 384 YTASLVLGKREEEITKEERQLAKAINFGLIYGISAKGLAEYART---------------- 427

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                     ++     E  +  +    +               
Sbjct: 428 ----------------------GYGVEISEEEAETFRNRFFKNFKAFKLWH--------- 456

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                 + K          RR                       
Sbjct: 457 ---------------EKVKKELKEKGVFRGRTLLGRRF---------------------T 480

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDI------VLTVHDEIVSETPDTPYFSV 644
            T         +Q    D+L   +                V  VHDEIV E        V
Sbjct: 481 ATTFNDAVNYPIQGTGADLLKLAVLLFDAEAKKKKLDAKLVNLVHDEIVVECRKEVANQV 540

Query: 645 GTLCS-LMTKNPSWAK-GLPLKAEGYEAKRYRK 675
             +    M +        +P++ E    +R+ K
Sbjct: 541 KEVLEKAMKQAGKIILKKVPVEVESVINERWIK 573


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/595 (12%), Positives = 139/595 (23%), Gaps = 115/595 (19%)

Query: 90  SKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                  ++            SL  A  A    E           ++       +  P  
Sbjct: 399 GAEVFDLALADYLLRPEERQRSLDRAASAY-LDELSAPQTAEDRTLSAVYSHLANGAPLH 457

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             +    +       Y              L      E  L  +   +   G  ++   +
Sbjct: 458 NEQIAFYEVILAAQLYGPMSAALADANLTELYGTV--ELPLVPILAAMERTGVAVNRAAL 515

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTL 261
            +          ++++DI  L      +      L   LF   G+             T 
Sbjct: 516 GRALAAANARIAEIEQDIYALAGTEF-NISSPKQLGEVLFDRLGLTSPKMKKTKTGYSTN 574

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320
             +L          D +L     S      L  +   +  D GR+  +      + TGR 
Sbjct: 575 AEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGALIRPDTGRVHTSFNQTV-TATGRL 633

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                                VR+      G   L+ A
Sbjct: 634 SSSDPNLQNIP------------------------VRTEEGRAVRALFEPGEGYDALLSA 669

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R+LA ++G++  I AF  G+DI+  T ++ F  P+ +V+  QR   K +   +
Sbjct: 670 DYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGI 729

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L + +          FE +    +    +            L 
Sbjct: 730 VYG-----LSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFLDRVVADAHTNGFVTTLY 784

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G          R     +             +                            
Sbjct: 785 GR---------RRALPAINSRNFMQRSNAERMAMNTPIQGTAADLI-------------- 821

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                  ++               +                             +     
Sbjct: 822 -------KIAMIRADAALRAAGVKSRI---------------------------LLQVHD 847

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                      E+V E  +     V  L  + M+     A  +PL  + +  K +
Sbjct: 848 -----------ELVLEVVNDEIAQVTELLTAAMSGAAQLA--VPLAVDVHTGKNW 889


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/590 (14%), Positives = 161/590 (27%), Gaps = 127/590 (21%)

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
             R    S++A       +        N+             IA                
Sbjct: 412 VARIHDVSLMAYLLDPTRT--------NYGYLYLTERFSVPSIATGSVDVECVSMVKALL 463

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           A    A +   +    D+             ++ E  L      +   G  ID   + + 
Sbjct: 464 AMDDAAVKALQDESLWDL------------YNNIELPLIHTLLVMEKNGIYIDPVKLEET 511

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
                 E + + ++I +L  G   +      L + LF    + ++  ++    T   +L 
Sbjct: 512 TIKFKAELEAVQQEIYELA-GETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLD 570

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325
                    + IL   + +         L+  ++    R+  T      + TGR S    
Sbjct: 571 MLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMV-TATGRLSSSDP 629

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384
             QN+P                                +R+      G   LV AD + I
Sbjct: 630 NLQNIP------------------------VRTEKGREIRALFYPGEGFDTLVSADYSQI 665

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA ++G++  IKAF +G+DI+  T A+      D+V+ E+R+  K +   + Y   
Sbjct: 666 ELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYG-- 723

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L + +          F  + + + +   M  +  E      + G   E
Sbjct: 724 ---ISDFGLSRDLGITRQEAKNYIELYFSRYPKVKEYMDNMVTEAHETGKVRTMFGRMRE 780

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
           L           +     +                    A++ +L M + +  +      
Sbjct: 781 L---------PDINSRNFNRRSFAERTAMNTPIQGTA--ADIIKLAMNKVESILEEKTFK 829

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
           SR L                                                       +
Sbjct: 830 SRLL----------------------------------------------LQVHDE---L 840

Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VL        E  +    ++ T L   M         +PL  + + A+ +
Sbjct: 841 VL--------EVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 88/661 (13%), Positives = 181/661 (27%), Gaps = 144/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L               I  F   +
Sbjct: 411 AKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTKA 464

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                         +  + F +    +   +           + E     +   +  +G+
Sbjct: 465 EKLELLSVELNALKRLCEYFEKGGLEENLLSLA--------REIETPFMKVLMGMEFQGF 516

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I++L      +      L   L+   G+   + S  
Sbjct: 517 KIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLP-KNKSHS 574

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 575 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 633

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 634 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 669

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 670 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINF- 725

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 726 -------------GLVYGMGS------------------------------KKLSETLNI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 743 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYL 802

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 803 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 826

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 827 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFIAKR 885

Query: 673 Y 673
           +
Sbjct: 886 W 886


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/773 (11%), Positives = 196/773 (25%), Gaps = 169/773 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E      + +           +T  +           + +    +W D  +    +
Sbjct: 281 ACDTE--VDIDVKQETP---VGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGPDV 335

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 336 LMEFAPFFEDSSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRTDGG 392

Query: 107 SSLKNA----------CLAL-NFSEHLTKMEEGKALIARFCKGSIDSP--PYDCTRANHV 153
            SL+               L    +   K   G+  I +       +   P +  +    
Sbjct: 393 YSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDR 452

Query: 154 QAWQ---------LFGEYCKRDVEATRELFKR-------LIPLSDGERDLW-LLDQTIND 196
           + W              Y     +  R+ +         L    +     +  +   +  
Sbjct: 453 ELWICYSSLDSMSTLKLYESLKSKLERKPWTFDGCPRGSLYDFYEEYWRPFGAILVKMET 512

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---LI 248
            G  +D   + +++++   +RK   +           D    +      +R   F     
Sbjct: 513 AGMLVDRAYLSEIEKVAVAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 572

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS-------GSAILKLNTLSE---- 297
                  + +     + +        K +   R            + I   +        
Sbjct: 573 ICKPGDFLPKSKAIKVPNDETAVSEGKKVPKYRTIELFNIVEDLKTDIFTASGWPSVSGD 632

Query: 298 -AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-----------EILTQTIQ 345
              +  G++   L +     T    G   +  N   ++ S            +   +   
Sbjct: 633 ALRNLAGKVPSDLVY----STDDECGSHSEISNCDLEDTSSYGTAYDAFGGGKEGKEACH 688

Query: 346 ALNRGETIADPLGLASD----------------CVRSCIIASNGKKLVVADLAGIEARVL 389
           A+     I     L S+                 +R   +A+ G  L+VAD   +E R+L
Sbjct: 689 AIAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRIL 748

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A +A     + AF  G D +  T    +    + V +E+                     
Sbjct: 749 AHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEEKV------------------IL 790

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G +         +        +  +  +         A   K+     +   K 
Sbjct: 791 EWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPHGLARDWKVSVKEAKDTLKL 850

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           W +  + VL       +      +    +                           R   
Sbjct: 851 WYSDRKEVLAWQMKQKQLAHEKSEVYTLL--------------------------GRSRR 884

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYD 623
           + ++    S          R            VQ  + D+    M    +       G+ 
Sbjct: 885 FPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNTRLKELGWT 935

Query: 624 IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
           ++L VHDE++ E P        ++    M+K    +    + L  +   A+ +
Sbjct: 936 LLLQVHDEVILEGPSESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNW 988


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 88/661 (13%), Positives = 181/661 (27%), Gaps = 144/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 355 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 411

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L               I  F   +
Sbjct: 412 AKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTKA 465

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                         +  + F +    +   +           + E     +   +  +G+
Sbjct: 466 EKLELLSVELNALKRLCEYFEKGGLEENLLSLA--------REIETPFMKVLMGMEFQGF 517

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I++L      +      L   L+   G+   + S  
Sbjct: 518 KIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLP-KNKSHS 575

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 576 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 634

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 635 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 670

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 671 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINF- 726

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 727 -------------GLVYGMGS------------------------------KKLSETLNI 743

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 744 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYL 803

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 804 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 827

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 828 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFIAKR 886

Query: 673 Y 673
           +
Sbjct: 887 W 887


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 88/666 (13%), Positives = 185/666 (27%), Gaps = 146/666 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85
            +   A++  D  +   D+ E    P  L  +L  +T + V     ++     +     G
Sbjct: 136 DLVGFAWSCGD-KLYATDKLELLQNPI-LKDFLE-KTPLKV-----YDFKKAKVLLNRFG 187

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +D+ +  +      +R              L  +    ++    +L  +      ++   
Sbjct: 188 LDLQAPAFD-----SR----------LAKYLLSTVENNEISTIASLYGQTYLVDDETFYG 232

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195
              +    +  + F E+  R V    E    L+             D E+ L  +   + 
Sbjct: 233 KGVKKAIPE-RETFLEHLARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKME 291

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-- 253
             G ++  + +L++Q       +KL ++I +L      +      L   LF   G  +  
Sbjct: 292 IAGIKVKKETLLEMQAGNELVIEKLTQEIYELAGEEF-NINSPKQLGELLFENLGFPIEY 350

Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 351 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 410

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 411 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 445

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   
Sbjct: 446 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPND 505

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 506 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 560

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 561 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 607

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 608 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 627

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +   ++  +    M +       +PL A+ 
Sbjct: 628 ----MLLQVHDE---IVL--------EVPKSELAAIKKIVKQTMEEAIQ--LSVPLIADE 670

Query: 668 YEAKRY 673
            E   +
Sbjct: 671 NEGVTW 676


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/665 (12%), Positives = 174/665 (26%), Gaps = 140/665 (21%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLG 85
                  A  +        D +       ++L Q+L D     + H++     L     G
Sbjct: 323 DGQAVGLAL-FRGAQAAWLDLSGLDEAAENVLAQFLADAAAPKIFHDAKATMHLLA-DRG 380

Query: 86  IDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
           + +       T + A           L +                      ++      +
Sbjct: 381 LKLAGIH-DDTLISAYLIQPDRRSHDLVDVVQYHL----------------KYAVPVHQA 423

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTIND 196
              +          +      +   + +  L  +L          + E  L  +   +  
Sbjct: 424 KKGELDLGLTADLAEPALAQAQAIHDLSAFLATKLAEKHADKLAAEMELPLIPVLFEMER 483

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +D+D + +L+    ++  +   D        + +      L++ LF    +     
Sbjct: 484 AGVAVDVDRLNELRAHFTEQVDQATNDAFAAIGHEV-NLSSPKQLQVVLFEELDLPRTKK 542

Query: 257 SEG---TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
            +    T    L+             L+  R A        ++ L +A   DGR+  T  
Sbjct: 543 IKTGFTTDAESLADLLVKTGHPFLVALMAYRDAIKLRQT--VDGLLKATHEDGRIHTTYA 600

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A  TGR S      QN+P                                +R   + 
Sbjct: 601 QTVA-ATGRLSSLNPNLQNIP------------------------VRSEEGRRIRDVFMV 635

Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G + L+  D + IE R++A ++ ++  I+A+ NGED++    ++ FN   ++V+ E R
Sbjct: 636 GEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPEEVTSEMR 695

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +  K M   L Y        +      L +            F+ +    ++   + DQ 
Sbjct: 696 SKVKAMSYGLAYG-----LSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSVVDQA 750

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            +    + + G          R     +    + L +             +         
Sbjct: 751 RKDGYTETIFGR---------RRYLPELNSSDRRLRDIAERAALNAPIQGSAADLV---- 797

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            ++    +  +       +                         
Sbjct: 798 -----------------KVAMLRIDEELKAGEYKSR------------------------ 816

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
               +         ++L        E  +     V  L    M +       +PL  +  
Sbjct: 817 ---MLLQVHDE---LIL--------EIAEGELEPVQELVTREMGQAAELL--VPLDVQPG 860

Query: 669 EAKRY 673
             + +
Sbjct: 861 VGRTW 865


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/668 (12%), Positives = 182/668 (27%), Gaps = 150/668 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A+++ D+       T++  +  +     +L    +        ++     +    
Sbjct: 333 DLVGFAWSYGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNH 382

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            G+D+ +  +      +R              L  +    ++    +L  +      ++ 
Sbjct: 383 FGVDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDETF 427

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQT 193
                +    +  + F E+  R +    E    L+             D E+ L  +   
Sbjct: 428 YGKGVKKAIPE-REKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAK 486

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           +   G  +  + +L++Q       +KL ++I +L      +      L + LF   G+  
Sbjct: 487 MEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPL 545

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                      T   +L            IL+    +      +  L + + +DG++   
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTR 605

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P                                +R   
Sbjct: 606 YVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 640

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426
           +       L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+ 
Sbjct: 641 VPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTA 700

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L + +        + FE +   +++   + 
Sbjct: 701 NDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKTYIDTYFERFPGIKNYMDEVV 755

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            +  +    + L     EL           +     ++               +      
Sbjct: 756 REARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI-- 804

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                               ++    +          T                      
Sbjct: 805 -------------------LKIAMIQLDKALVAGGYQTK--------------------- 824

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                  +         IVL        E P +    +  L    M +       +PL A
Sbjct: 825 ------MLLQVHDE---IVL--------EVPKSELTEMKKLVKQTMEEAIQ--LSVPLIA 865

Query: 666 EGYEAKRY 673
           +  E   +
Sbjct: 866 DENEGATW 873


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 93/514 (18%), Positives = 169/514 (32%), Gaps = 73/514 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            LFID ET                   I L     D+E + + D  +       L + + 
Sbjct: 24  YLFIDTETTGD---------------RIRLFQVG-DEERIFVIDLFDLPEAVDVLKELIA 67

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL-NFSE 120
            + V  V HN  F+         + I       T + +   G    SL +    L  ++ 
Sbjct: 68  KKGV--VGHNLKFDLKFM---YPLGIVPYATFDTMIGSFLLGYERHSLSHVAERLLGYTM 122

Query: 121 HLTKMEEG-------KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             +            K  I       +            + A        +     T  +
Sbjct: 123 DKSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARV 182

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           F    P +  E         +   G  +D + + +L     ++ +KL   I+        
Sbjct: 183 FGLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKKLQKL---IMDFYIKYRI 239

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                  +  +L    G++L +  +    T    L+  +  +  +D++  R         
Sbjct: 240 DPMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHVKEVRDILEIRRIKKAL--D 297

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL  L   +  +GR+    +  GA  TGR S      QN+PR                  
Sbjct: 298 KLKELKGFI-RNGRVYPEFRQIGA-VTGRMSSSNPNVQNIPRD----------------- 338

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +RS   AS G   V+AD + IE R+ A    ++  ++AF  G D++ 
Sbjct: 339 -------------MRSLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHR 385

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKST 469
            T +     P ++++KE+R + K M   L Y   A+     A    G++L+  + +V   
Sbjct: 386 YTASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSEYARSSYGVELEIEAADVFRQ 445

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVK--DKLIGT 501
             F+ +   +  H  ++ +  E        L+G 
Sbjct: 446 KFFKFFHAFKDWHDSVKRELKENKEVVGTTLLGR 479


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/667 (12%), Positives = 165/667 (24%), Gaps = 151/667 (22%)

Query: 28  AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78
             I            +AW ++                    L  + V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSDAFQTAL-SKAV-----NI-YDFKR 377

Query: 79  --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             +    LGID+P+  +                      L  +    ++     L     
Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187
             + +       +    +   L     K+           L  L          D E  L
Sbjct: 423 LETDEVVYGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHSQSELLFDMELPL 482

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G ++    + ++         KL ++I ++      +      L + LF 
Sbjct: 483 ANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFE 541

Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
              +             T   +L            IL     +      +  L + +  D
Sbjct: 542 KMELPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           G++         ++TGR S      QN+P                               
Sbjct: 602 GKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636

Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420
            +R   + S     L+ +D + IE RVLA I+G++  I AF  G DI+ +T  + F    
Sbjct: 637 LIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V+   R   K +   + Y               L + +        + FE +   ++
Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYINTYFERYPGIKA 751

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +   +  +  +    + L     EL           +     ++               +
Sbjct: 752 YMENVVREAKDKGYVETLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                     ++   ++          T                
Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
                        +         IVL V        P+    ++  L    M      A 
Sbjct: 827 ------------MLLQVHDE---IVLEV--------PNDELVAMKALVKETMEAAVELA- 862

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 863 -VPLIAD 868


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 91/615 (14%), Positives = 181/615 (29%), Gaps = 140/615 (22%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140
           G+++  +    T +                     L+           +  +        
Sbjct: 392 GVEL-PEPLFDTKLAGYLAHPDFHADTLEQAAAHFLDLHIEAQAEAATQGTLDFDEPEEN 450

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           DS   +           L  EY        +     L+     E  +  +   +   G +
Sbjct: 451 DSKNGELILTRTAI-VGLLAEYLA--GVLDKREQFGLLKSI--ELPVSQVLHGMEQVGAQ 505

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259
           +D+  ++++++ +A +  +  ++      G   + +    L+  LF   G+     ++  
Sbjct: 506 VDMTRLVQMRDQLAADAAQ-AQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPTKKTKSG 564

Query: 260 ---TLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307
              T  + L              Q    L+++R  +    I  + TL +A +  DGR+  
Sbjct: 565 SYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHT 622

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
           T +   A  TGR S      QN+P                            A   +RS 
Sbjct: 623 TFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPAGREIRSA 657

Query: 368 IIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            +   G + L+ +D + +E R++A ++G++  I+AF +G+D +    +  +  P+D ++ 
Sbjct: 658 FVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITS 717

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +QR+  K M   L Y        T                                    
Sbjct: 718 DQRSHVKAMSYGLAY-----GLSTYGL--------------------------------- 739

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 A + K+     E +K  + A    V +  + L                      
Sbjct: 740 ------AQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIF-------- 785

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                              RR  +  +K     +  A  +               +Q  +
Sbjct: 786 ------------------GRRRYFPGLKSPNRAVRDAAERA---------ALNAPIQGSA 818

Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
            DI+   M  A         G  ++L +HDE+V E           L    M    + A 
Sbjct: 819 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA- 877

Query: 660 GLPLKAEGYEAKRYR 674
            +PL         ++
Sbjct: 878 -VPLDVSTGIGSDWQ 891


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 78/630 (12%), Positives = 156/630 (24%), Gaps = 125/630 (19%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111
             L  +L D     V HN+     +  +  G  +       T++ A          +L  
Sbjct: 383 QALAAWLADPGQPKVLHNAKNALRVLPEQ-GWRLEGISM-DTALAAYLVKPGRRSFALDA 440

Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L               +A       ++          +     F    K      
Sbjct: 441 LAVEYLGRELAPA--PASDGQLAFGADDRAEADALMAQARAVLDLGDAFTTRLKEVGATE 498

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
                    L D E    ++   +   G   D   +  +++  A   ++  ++       
Sbjct: 499 L--------LYDMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAVKEAHAAVGR 550

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASS 285
              +      L+  LF    +     ++    +                  ++L     +
Sbjct: 551 EF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQA 609

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +  +  L + +++DGR+  T     A  TGR S      QN+P              
Sbjct: 610 KLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-------------- 653

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                             +R   +   G   L+ AD + IE RV+A ++ +   I+AF +
Sbjct: 654 ----------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTS 703

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           GED++ T  ++ F      V  E R   K M   L Y               L+++    
Sbjct: 704 GEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNIEAGEA 758

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                + F  +     +   + ++       + ++G          R     +    +  
Sbjct: 759 RGLMDTYFLRFGGVRDYLHRVVEEARSTGYTETILGR---------RRYLPDLNSDNRQR 809

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E    +                                                   A 
Sbjct: 810 REAAERMALNAPIQGTAADIV-----------------------------------KVAM 834

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            ++ R  T               ++    +                EIV E        V
Sbjct: 835 LKVDRALTE-------------AELTSRMLLQVHD-----------EIVLEIAKGEREQV 870

Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
             +    M+         PL       + +
Sbjct: 871 EEILRREMSTAVELRA--PLDVSVGVGRDW 898


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 92/704 (13%), Positives = 181/704 (25%), Gaps = 157/704 (22%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLF 75
            K  + A  E   +               D           L  +L DE    +      
Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKNTSLWIDTRSIDPELDAALAAWLSDEAARKIV----M 461

Query: 76  ERIL---FKKTLGIDIPSKRWICTSVLARTNGL---------PSSLKNACL-ALNFSEHL 122
           +  +     +  G ++        ++ +   G             +++     L   +  
Sbjct: 462 DLKVQRKLLRAYGYELAG-AVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKDP 520

Query: 123 TKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                    E +A  + F     ++ P D  R     +  +      R +    E   +L
Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPG-EAEPVDNLRYFTQISRIIHEL--ARLLHYEMEEHGQL 577

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI--------VKLTD 229
               + E  L  +   +   G  +   L+ +L +  +    +  +               
Sbjct: 578 KVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTDDG 637

Query: 230 GIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHS----NITQLAKDLI 278
               +      L+  LF    +               ++  +L+      +       L 
Sbjct: 638 EEPLNLASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFLGALA 697

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
             R          +  L +A + DGR+  T Q  GA+ TGR S      QN+P       
Sbjct: 698 AYRDNIKLVQT--VEGLQKAAADDGRVHTTFQQ-GAASTGRLSSTAPNLQNIP------- 747

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-------LVVADLAGIEARVLAW 391
                                    +R   I +           L+ AD + IE R++  
Sbjct: 748 -----------------IRTEEGRRIRGAFIVAPAPVDGVEYEGLLTADYSQIEMRIMVH 790

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +A ++  I A+  GED++    ++ F    ++V+ EQR+  K M   L Y          
Sbjct: 791 LAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYG-----LSRF 845

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L++         T+ F+ + +       +  Q  +    + + G          R
Sbjct: 846 GLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGR---------R 896

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +    +   E                                        ++   
Sbjct: 897 RVLPDLDSPNRVRREAAERAALNAPIQGTAADII---------------------KIAMI 935

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           ++                                    L   M           L VHDE
Sbjct: 936 NIHRRLREEG----------------------------LKTRML----------LQVHDE 957

Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           I+ E       +    L   M+   S    +PL  +    K ++
Sbjct: 958 IILEVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 88/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           +  D ET +           Y     +   + +  +      D           L + L 
Sbjct: 135 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 184

Query: 63  DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114
            E    V HN  F+   +K  LG+        +R   T +             LK+    
Sbjct: 185 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 244

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  ++  +      L                     +  + +   Y  +D +AT  L 
Sbjct: 245 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 298

Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +P  +    L  L            Q + DRG  I +D + + Q  +     K  E 
Sbjct: 299 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 358

Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270
           +         +       +      LR+ LF   G+          ++ T    L+    
Sbjct: 359 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 418

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +      +  +  ++ +DG +R     +  +     S      Q L
Sbjct: 419 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 478

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR E                             ++ C++A  G +++  DL   E    A
Sbjct: 479 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 511

Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438
            ++G+    + F N         D +       F    +           R   K +   
Sbjct: 512 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 571

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G            ++     Q  K+   F                        + 
Sbjct: 572 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 603

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  +   + +      +                                
Sbjct: 604 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 637

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I     R+    ++  +   +     +              I+Q+ S D L  G  +A 
Sbjct: 638 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 688

Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                        IV+ VHD +V+   +        +
Sbjct: 689 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 725


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 177/622 (28%), Gaps = 163/622 (26%)

Query: 70  AHNSL-----FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            HN       ++     + +G            +++  N                     
Sbjct: 316 GHNLKSAQFFYDIKGIYRLIGERYEEA--YDVFLMSWLNDP------------------- 354

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                           DS     ++A +++ +        ++ +   +    L      E
Sbjct: 355 ----------------DSGGITKSKAENIEQFIGNIVVHAQEEKDKLKANGLLEVYLGME 398

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             +      + + G   D D++ K+ + +  E  ++ E I K   G   +      L+++
Sbjct: 399 LPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKI-KTFVGYDINLNSPKQLQVF 457

Query: 245 LFLITGIDLVDMSE---GTLKSILSHS----NITQLAKDLILNRLASSGSAILKLNTLSE 297
           LF   G++ +  ++    T +  L        +     + IL     +         L +
Sbjct: 458 LFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTYALPLKD 517

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V +DGR+  + +  G + TGR S      QN+P                          
Sbjct: 518 YVLADGRIHSSFRQTG-TATGRLSSVNPNMQNIP------------------------MK 552

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G     +R   I   G   V  D + IE R+LA + G++   +A+ N EDI+  T +  F
Sbjct: 553 GKWGVKLREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIF 612

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
               +KV    R + K +                    GL     S              
Sbjct: 613 GVAPEKVDSGMRRLAKAVN--------------FGILYGLSPFGLS-------------- 644

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                               +     +   + + A +  V      + +      ++G +
Sbjct: 645 ----------------RDTGVSQKEAKKFIEKYFATYPKVKGF---IEKIAKETKEKGYA 685

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
            +                          R+    +++       T   +  R  T     
Sbjct: 686 ETLA-----------------------GRKRFIREIRSKN---RTVAMRGERIAT----- 714

Query: 598 TENIVQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSL 650
               +Q  + DI+   M           YD  +VL VHDE+V E  D         + S+
Sbjct: 715 -NVPMQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSI 773

Query: 651 MTKNPSWAKGLPLKAEGYEAKR 672
           M         +PL   G   K 
Sbjct: 774 MEGVME--LDVPLVVNGAAGKN 793


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 96/332 (28%), Gaps = 59/332 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51
            +  ID ET S         +  A    +   + A+D                       
Sbjct: 346 KRFAIDTETTSLD-------YRIA---EMVGFSVAFDANDAYYIPLAHDYEGAPEQLNRD 395

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108
           A+   +   L D +V  + H+  ++  +F+   GI +    +  T + +           
Sbjct: 396 AIIQQIKPILEDPSVEKIGHHLKYDAHIFENH-GIHLQGW-YFDTMLASYVLNAVTTRHG 453

Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           + +     L+      +   GK                   +  +    +  G Y   D 
Sbjct: 454 MDDVARVYLSHLTTTFEQVAGKGAKQ---------------KTFNQIEIETAGHYAAEDA 498

Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
             T  L++ L                 E  +  +  T+ + G  +DL  + +L    A  
Sbjct: 499 HVTYRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSVDFANT 558

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272
            + L+  I++   G   +      +   LF   G+     +      T +++L   +   
Sbjct: 559 IQNLENQIIE-IAGESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKIDHP- 616

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
              +LI+     +         L +  + D  
Sbjct: 617 -ITELIIEYRGLTKLRSTYTEALVKQANPDTH 647


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 88/602 (14%), Positives = 171/602 (28%), Gaps = 123/602 (20%)

Query: 90  SKRWICTSVLARTNGLPSSLKNA--CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            K    T +                  A     H+ +  EG            DS   + 
Sbjct: 433 PKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRND 492

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +     A          D    RE F  L  +   E  +  +   +   G ++D++ ++
Sbjct: 493 NQLPRHTAIVGLLARKLADSLDQREQFSLLESV---EIPVSRVLYGMEHAGAQVDMNRLM 549

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263
            ++E +A +     ++      G   + +    L+  LF   G+     ++     T  +
Sbjct: 550 SMREQLAAD-ANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAA 608

Query: 264 ILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGA 314
            L              Q    L+L+R  +    I  + TL +A + SDGR+  T +   A
Sbjct: 609 ALQVLRDRSCGNDRACQFLDALLLHREKNKLKQI--VQTLIDATNRSDGRIHTTFEQTVA 666

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                            A   +RS  +   G 
Sbjct: 667 -ATGRLSSVDPNLQNIP------------------------NRDPAGREIRSAFVPGEGF 701

Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
           + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K
Sbjct: 702 ESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVK 761

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            M   L Y        T      L ++           F  + +   +   +     E  
Sbjct: 762 AMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKG 816

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             + + G          R    G+    + + +             +             
Sbjct: 817 YTETIYGR---------RRYFPGLKSPNRAVRDAAERAALNAPIQGSAADI--------- 858

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                        ++                                    ++  I+   
Sbjct: 859 ------------MKIAMIRADDALREA-----------------------GLASRII--- 880

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
                           DE+V E        V  L    M      A  +PL         
Sbjct: 881 -LQIH-----------DELVVEVAPGEAERVTALVKDAMEHAVDMA--VPLDVSTGIGSD 926

Query: 673 YR 674
           ++
Sbjct: 927 WQ 928


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/616 (12%), Positives = 160/616 (25%), Gaps = 126/616 (20%)

Query: 73  SLFE---RILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEE 127
           + ++     +    L ID+P   +    +          + L             +    
Sbjct: 373 ATYDFKRAKILLSHLNIDVPRGAF-DARLANYLLSNVDDNQLSTIARVHTNIHLESDDVV 431

Query: 128 -GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
            GK +   F        P       H+          K  +        +L    D E  
Sbjct: 432 YGKGVKRAF--------PDKGLLFAHLAKKIKVLVESKATMLDKLSDHDQLALFEDIEMP 483

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +   G +++ + ++++ E       +L ++I  L      +      L   LF
Sbjct: 484 LANVLAKMEITGIKVNKETLVEMAEQNKVIIDRLTQEIYDLAGEEF-NINSPKQLGSILF 542

Query: 247 LITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
               + +           T   +L            IL+    +      L  L + +  
Sbjct: 543 EKMQLPIEMTKKTKTGYSTAVDVLERLAPIAPVVAKILDYRQITKLQSTYLIGLQDYIME 602

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DG++         ++TGR S      QN+P                              
Sbjct: 603 DGKIHTRYVQ-DLTQTGRLSSIDPNLQNIP------------------------IRMEQG 637

Query: 362 DCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R    AS     L+ +D + IE RVLA I+G+   I AF    DI+ +T  + F   
Sbjct: 638 RLIRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAID 697

Query: 421 IDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
            ++  +   R   K +   + Y               L + +        + F+ +   +
Sbjct: 698 KEEDVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRQKAKEYINTYFDRYPGIK 752

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSI 538
            +   +  +  +    + L     EL           +     ++        +      
Sbjct: 753 DYMDSIVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFAERTAINSPIQG 803

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
           SA  +  +  + + +   +                                         
Sbjct: 804 SAADILKIAMINLDKALEEGRFKT------------------------------------ 827

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
                        + +         IVL        E P      V  L    M      
Sbjct: 828 -------------KMLLQVHDE---IVL--------EVPKDELEKVKQLVKETMEHAVD- 862

Query: 658 AKGLPLKAEGYEAKRY 673
              +PL+A+    K +
Sbjct: 863 -LSVPLRADENSGKSW 877


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/659 (13%), Positives = 162/659 (24%), Gaps = 127/659 (19%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLG 85
            A     A A  D            A     +  +L D     V H++  +        G
Sbjct: 343 DARARALAIATADGHAAWVGVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHALA-AQG 401

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             +       T++             L +  +     E +     G        +     
Sbjct: 402 WTVRGL-VADTAIATYLVRPDQRAYDLADLSVRYLHRELV---TTGADTGQLAFEEVDT- 456

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                      +A      +     E        L+     E  L  +  T+   G  +D
Sbjct: 457 ----GADVAVQRARAALDLWAVIGAELEASDSMSLLADL--ELPLVDVLMTMESTGIAVD 510

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259
            D +  L     +      ++   +    + +      L++ LF   G+     ++    
Sbjct: 511 TDHLDTLHAEFTERMLGAAQEAYAVIGREV-NLGSPKQLQVVLFDELGMPRTKRTKTGYT 569

Query: 260 TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           T    L            + L+ +R  +       +  L + V+ DGR+  T     A  
Sbjct: 570 TDADALQGLFAKTQHPFLEHLLAHRDVTRLRQT--VEGLQKTVAPDGRIHTTYAQTIA-A 626

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                            +   +R       G   
Sbjct: 627 TGRLSSADPNLQNIP------------------------IRTESGRRIREAFCVGPGFET 662

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++ +   I+AF  GED +    AK F+     +    RA  K M
Sbjct: 663 LLTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAM 722

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        +      L +      V     F+ +     +   + D+  +    
Sbjct: 723 NYGLAYG-----LSSYGLGQQLGISPGDAQVLMDDYFQTFGGVRDYLHGVVDEARQTGFT 777

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             ++G          R     +    +   E    +                        
Sbjct: 778 ATILGR---------RRYLPDLQSDNRQRREMAERMA----------------------- 805

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                       L           +  A   + R     G                  + 
Sbjct: 806 ------------LNAPIQGSAADLIKVAMLGVDRALADAGL-------GS------RMLL 840

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +VL        E       ++  L    M         +PL       + +
Sbjct: 841 QVHDE---LVL--------EVAPGERDALEALVREQMAAAAD--LSVPLDVSVGVGRTW 886


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/481 (14%), Positives = 143/481 (29%), Gaps = 68/481 (14%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107
                     +L D     V H++     +F +  G+ +       T++ A         
Sbjct: 488 DEDDERAFADWLGDPERPKVMHDAKGLMRVFGEH-GMTVAGVAM-DTALGAYLVKPGRRT 545

Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +L       L                      + +S       A+     +      + 
Sbjct: 546 FALDALSLEYLGRE----------------LVPAQESDGQLAFGADDETQARTLMVEART 589

Query: 166 DVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++    L  RL  +      +D E     L   +   G   D + + +++   A   ++
Sbjct: 590 ILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQ 649

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI---TQL 273
              +          +      L+  LF    +     ++    T    L+        +L
Sbjct: 650 AVREAHAAVGHEF-NLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHEL 708

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              ++ +R  +   +   +  L ++++ DGR+  T     A  TGR S      QN+P  
Sbjct: 709 PVLMLRHREQAKLRST--VEGLIKSIAPDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 763

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392
                                         +R   +   G + L+ AD + IE RV+A +
Sbjct: 764 ----------------------VRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHL 801

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           + ++  I AF +GED++ T     FN     V  E R   K M   L Y           
Sbjct: 802 SEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYG-----LSAFG 856

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               L ++         + FE +     +   + ++         ++G    L       
Sbjct: 857 LSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDN 916

Query: 513 K 513
           +
Sbjct: 917 R 917


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 185/664 (27%), Gaps = 142/664 (21%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERI 78
           +   I   A+   D+        E          + +   Q L+   +  + H+      
Sbjct: 355 KDKKILALAFLLQDQ-GYFLPLEEALFSPFSLEFLQNAFSQMLQHACI--IGHDLKPLLS 411

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFC 136
             K    + + + R   T +LA                 L       +       I  F 
Sbjct: 412 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EDLIPHEKIKDF- 464

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
             +          +  + A +   EY ++           L    D E     +   +  
Sbjct: 465 -KTKSKAEKSELLSMELNALKRLCEYFEKGGLEE----DLLTLARDIETPFVKVLMGMEF 519

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID     +L++    E   L+  I+ L      +      L   L+   G+   + 
Sbjct: 520 QGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYDKLGLP-KNK 577

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S  T +  L        +  LIL     +         L      D ++  T    G + 
Sbjct: 578 SHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 636

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   IAS     
Sbjct: 637 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 672

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K +
Sbjct: 673 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 729

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+                                 + +  
Sbjct: 730 NF--------------GLVYGMGS------------------------------KKLSET 745

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  +  +   +A+  +   +      + E      +    +   RV +   +      
Sbjct: 746 LSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFDFTGVNDYVKG 805

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
             +                                          I Q  + D+L  GM 
Sbjct: 806 NYLREG------------------------------------VNAIFQGSASDLLKLGML 829

Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  +     +   +  ++     +   +PL+   + 
Sbjct: 830 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFI 888

Query: 670 AKRY 673
           AKR+
Sbjct: 889 AKRW 892


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/697 (12%), Positives = 176/697 (25%), Gaps = 159/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           +  D ET +           Y     +   + +  +      D           L + L 
Sbjct: 161 VAFDSETSAL----------YCRDGYLLGVSMSHQEYQGVYIDSDCLTEVAVYYLQKILD 210

Query: 63  DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114
            E    V HN  F+   +K  LG+        +R   T +             LK+    
Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  ++  +      L                     +  + +   Y  +D +AT  L 
Sbjct: 271 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATLRLH 324

Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +P  +    L  L            Q + DRG  I +D + + Q  +     K  E 
Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 384

Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270
           +         +       +      LR+ LF   G+          ++ T    L+  + 
Sbjct: 385 LYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELST 444

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +      +  +  ++ +DG +R     +  +     S      Q L
Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR E                             ++ C++A  G +++  DL   E    A
Sbjct: 505 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 537

Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438
            ++G+    + F N         D +       F    +           R   K +   
Sbjct: 538 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 597

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G            ++     Q  K+   F                        + 
Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  +   + +      +                                
Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 663

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I     R+    ++  +   +     +              I+Q+ S D L  G  +A 
Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 714

Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                        IV+ VHD +V+   +        +
Sbjct: 715 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/661 (13%), Positives = 181/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 354 KVLALAFLFEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L               I  F   +
Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDGVLKEYLKEELIP------HEKIKDF--KT 462

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                        + A +   EY ++           L    + E     +   +  +G+
Sbjct: 463 KSKVEKLEQLDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 518

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I+ L      +      L   L+    +   + S  
Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NKSRS 576

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 577 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 635

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 636 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 671

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 672 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINF- 727

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 728 -------------GLVYGMGS------------------------------KKLSETLNI 744

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 745 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGANDHIKGNYL 804

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 805 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 828

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 829 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFVAKR 887

Query: 673 Y 673
           +
Sbjct: 888 W 888


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           +  D ET +           Y     +   + +  +      D           L + L 
Sbjct: 131 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 180

Query: 63  DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114
            E    V HN  F+   +K  LG+        +R   T +             LK+    
Sbjct: 181 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 240

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  ++  +      L                     +  + +   Y  +D +AT  L 
Sbjct: 241 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 294

Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +P  +    L  L            Q + DRG  I +D + + Q  +     K  E 
Sbjct: 295 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 354

Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270
           +         +       +      LR+ LF   G+          ++ T    L+    
Sbjct: 355 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 414

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +      +  +  ++ +DG +R     +  +     S      Q L
Sbjct: 415 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 474

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR E                             ++ C++A  G +++  DL   E    A
Sbjct: 475 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 507

Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438
            ++G+    + F N         D +       F    +           R   K +   
Sbjct: 508 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 567

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G            ++     Q  K+   F                        + 
Sbjct: 568 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 599

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  +   + +      +                                
Sbjct: 600 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 633

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I     R+    ++  +   +     +              I+Q+ S D L  G  +A 
Sbjct: 634 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 684

Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                        IV+ VHD +V+   +        +
Sbjct: 685 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 721


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/630 (13%), Positives = 161/630 (25%), Gaps = 147/630 (23%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                   +   L D+++  + ++      L K                ++        S
Sbjct: 369 NNDWFSDIIFNLLADKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGLS 425

Query: 109 ---------------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---- 149
                          L        F     +       +         S           
Sbjct: 426 QKNLFEEALKEDNRPLSKLAYREEFKGDTERSTAAYKSVREDASTGSTSKLPLEVEFGKR 485

Query: 150 -----ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                 +          Y +  +E       RL    D    +  +   +   G ++D +
Sbjct: 486 PIVINESARIVANFISLYKQNILELKDNKAFRLYSDID--LPICFILDKMEKVGIKVDAN 543

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEG 259
            + +L      E  KL+E+I  L+     +      L   LF    +          S  
Sbjct: 544 YLKQLSTEFGAEILKLEEEIFALSGTKF-NIGSLKQLGEILFEKMQLPFGKASAKASSYS 602

Query: 260 TLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           T   IL   +       DL+L     +       ++L + + +      T     ++ TG
Sbjct: 603 TGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTG 662

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                              + +R   IA  G KL+ 
Sbjct: 663 RLSSQEPNLQNVP------------------------IRSSEGNKIRQAFIAEEGYKLIS 698

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R+L+ IA  D   +AF N +DI+  T  + FN    +++ E R   K +   
Sbjct: 699 ADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAKAIN-- 756

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                   A +  +
Sbjct: 757 ------------FGIIYGIS------------------------------AFGLAKQLNV 774

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                    K + A+++GV +  +                                  + 
Sbjct: 775 TNGEASEYIKKYFAEYKGVQEYMEQTKAFA--------------------------SSNG 808

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
           ++     R+     +               R            +Q  + DI+   M N  
Sbjct: 809 YVTNFFGRKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINLD 857

Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYF 642
                 K    +VL +HDE++ E P     
Sbjct: 858 QEIEKRKLKTRLVLQIHDELLFEAPIDEVE 887


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/659 (13%), Positives = 175/659 (26%), Gaps = 141/659 (21%)

Query: 34  AYAWDDEPVKLWD----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGI 86
           A+AW +                +    L + +           + ++     +    LGI
Sbjct: 339 AFAWGNSDYIYVSKDSALLTGPSFTKRLAEPI-----------ATYDFKRSKVLLSHLGI 387

Query: 87  DIPSKRWICTSVLARTNGL--PSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSP 143
           D+P   +    +          + L        N +    ++  GK +   F        
Sbjct: 388 DLPQANY-DARLANYLLSNIEDNELATIARLHTNLNMEADEVVYGKGVKRAF-------- 438

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
           P D    +H+          K  +     + K      D E  L  +   +   G  ++ 
Sbjct: 439 PEDEALFDHLARKIQVLVDSKAVILDKLAVNKEEDLYFDIELPLANVLAKMEIAGITVNK 498

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSE 258
             + ++ E      + L E+I ++      +      L   LF    +            
Sbjct: 499 TALQEMAEQNKAVIESLTEEIYEMAGEEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGY 557

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    S      +  L + + SDG++         ++TG
Sbjct: 558 STAVDVLERLAPIAPIVAKILDYRQISKLQSTYVIGLQDYIMSDGKIHTRYIQ-DLTQTG 616

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                                +R   + S     L+
Sbjct: 617 RLSSSDPNLQNIP------------------------VRLEQGRLIRKAFLPSSEDAVLL 652

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAIGKVME 436
            +D + IE RVLA I+G++  I AF    DI+ +T  + F    ++  +   R   K + 
Sbjct: 653 SSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMRVFGIEKEEDVTPNDRRNAKAVN 712

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L + +        + FE +   + +   +     +    +
Sbjct: 713 FGIVYG-----ISDFGLSNNLGITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVE 767

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHK 555
            L     EL           +     ++        +      SA  +  +  + + +  
Sbjct: 768 TLFNRRREL---------PDINSRNFNIRSFAERTAINSPIQGSAADILKIAMINLDKAL 818

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
            +                                                      + + 
Sbjct: 819 SEGQFK-------------------------------------------------AKMLL 829

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   IVL V        P+    ++  L    M      A  +PL A+    K +
Sbjct: 830 QVHDE---IVLEV--------PNDELEAIKALVKKTMEGAVDLA--VPLLADENTGKTW 875


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 145/495 (29%), Gaps = 123/495 (24%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  +  +   +   G  + L  +L+ ++ I ++   L+ +I +              +  
Sbjct: 433 EIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREAGQTFSIL-SPKQVGE 491

Query: 244 YLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
            L+   G+           +  T +  L           LIL+           L  + E
Sbjct: 492 VLYGRLGLPPPRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPMEE 551

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
              SDGRL G      A  TGR S      QN+P                          
Sbjct: 552 GRGSDGRLHGQFNQTVA-ATGRLSSSRPNLQNIP------------------------AR 586

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 VR C +A  G  L+ AD + IE R+LA  +G+ +  +AF+ GEDI+  T A  F
Sbjct: 587 TELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALLF 646

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
               + V+ E R   K +                    G+                    
Sbjct: 647 G---EPVTSESRRRAKTINF--------------GILYGMS------------------- 670

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                          +    +     + +   + +   GV   ++ + E           
Sbjct: 671 -----------AYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPYFEKIREEARRTG----- 714

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                 I     R     +++ D   +     ++          
Sbjct: 715 ---------------------RIRTLLGRIRPIPEIRSDNRNVREYGERM---------A 744

Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650
             +++Q  + D++ + M + ++          ++L VHDE++ E  +    S+  +    
Sbjct: 745 VNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKT 804

Query: 651 MTKNPSWAKGLPLKA 665
           M         +PL  
Sbjct: 805 MEGAIP--LSVPLPV 817


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/497 (15%), Positives = 143/497 (28%), Gaps = 110/497 (22%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +  RG       +++L+  + ++  +++  I +L      +      L
Sbjct: 437 EVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKF-NLNSPKQL 495

Query: 242 RMYLFLITGIDLVDMS---EGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSE 297
              LF   G+  V  +     T    L+   +        IL+    S      +  L +
Sbjct: 496 SKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSFVKALLK 555

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +   GR+ G     G + TGR S      QNLP                          
Sbjct: 556 RIDETGRVHGNFIQTG-TATGRLSSAEPNLQNLP------------------------VS 590

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
              S  VR  + A  G  LV AD + +E R+LA ++ +   I+AF  GEDI+  T    F
Sbjct: 591 DPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTETAKHLF 650

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           +T   +++  +R + K +   + Y               L +            F+ + +
Sbjct: 651 HT--RQITDRERRVAKTVNFGIIYGMSPH-----GLAERLSIPLQEAKDYIERYFQKFPK 703

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                     +  +    +   G    L           + +                  
Sbjct: 704 VREFIEETVREAYKKGFVETAFGRRRPL---------PELKEKSFHKRSFGERAAVNTVI 754

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
                                        ++   +++ +   LN+               
Sbjct: 755 QGTAADI---------------------MKMAMVNLQPEAEKLNSY-------------- 779

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656
                                     I+L VHDE+V E P+     V   +  +M    +
Sbjct: 780 --------------------------IILQVHDELVLEAPEGAEEEVAAKVKQVMEGAAN 813

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  E    K +
Sbjct: 814 --LSVPLTVEVKSGKEW 828


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/717 (14%), Positives = 195/717 (27%), Gaps = 155/717 (21%)

Query: 4   LFIDIETRS-PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--------AMP 54
              D ET    +          A +A IT  +++  +          +S        A+ 
Sbjct: 22  FAFDFETSPRDKWRNDKSAALDAHKADITGISFSVSEGTAIYVPLKHRSGRNAENQAAIW 81

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L      + V+ VAHN  FE +      GI +  K    T   ++      +LK+   
Sbjct: 82  DYLKLLFESKDVIKVAHNLAFESMFL-YARGIVLQ-KPCYDTIAASQL-----TLKS--- 131

Query: 115 ALNFSEHLTKMEEGKALIARFCK----GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
              +          K L    CK                  + Q  +    Y   D + T
Sbjct: 132 --KWEFRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVR-YACADSDYT 188

Query: 171 RELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
             L+       D             E    +    +   G  +D   +LK Q   A++  
Sbjct: 189 LRLYHVFNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIV 248

Query: 219 KLDEDIVKLT-DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT------------LKSIL 265
            + ++I  +  +  I ++  T A + YLF+  G+ ++  +                +   
Sbjct: 249 SIRKEIAGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEWCA 308

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324
           ++        +L+             ++     +  D GR+   L   G + TGR++   
Sbjct: 309 TNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLG-TETGRFASRN 367

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN P+++                             VR  IIA  GK L+  D + I
Sbjct: 368 PNMQNCPQKDNDPIG------------------------VRKFIIAPAGKVLLSLDFSQI 403

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRAIGKVMEL 437
           E RV A+   +   ++ +  G DI+  T +  +  P +          KE+R I K    
Sbjct: 404 ELRVGAFYCRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNF 463

Query: 438 ALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
            + Y       +       G++           +    +         ++ +       +
Sbjct: 464 GVFYGLFPTGLQRTLKFKAGINPTLAECETIIQNLKSGYPGLAKWQDEVKKRAAVSCYSE 523

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
             +G    L+         G+                                       
Sbjct: 524 TWLGRRRYLL---------GIRSSDWGKKSFAERCALNTPIQGTAADI------------ 562

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
              + L   R +                   ++                        M  
Sbjct: 563 ---LKLACGRIIS-----------GLPERLWLKP-----------------------MLQ 585

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
                       HDE+V E P+      V  +   M   P  A  +P+ AE    + 
Sbjct: 586 I-----------HDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAEASVGRN 631


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           +  D ET +           Y     +   + +  +      D           L + L 
Sbjct: 161 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210

Query: 63  DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114
            E    V HN  F+   +K  LG+        +R   T +             LK+    
Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  ++  +      L                     +  + +   Y  +D +AT  L 
Sbjct: 271 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 324

Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +P  +    L  L            Q + DRG  I +D + + Q  +     K  E 
Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 384

Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270
           +         +       +      LR+ LF   G+          ++ T    L+    
Sbjct: 385 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 444

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +      +  +  ++ +DG +R     +  +     S      Q L
Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR E                             ++ C++A  G +++  DL   E    A
Sbjct: 505 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 537

Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438
            ++G+    + F N         D +       F    +           R   K +   
Sbjct: 538 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 597

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G            ++     Q  K+   F                        + 
Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  +   + +      +                                
Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 663

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I     R+    ++  +   +     +              I+Q+ S D L  G  +A 
Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 714

Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                        IV+ VHD +V+   +        +
Sbjct: 715 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           +  D ET +           Y     +   + +  +      D           L + L 
Sbjct: 161 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210

Query: 63  DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114
            E    V HN  F+   +K  LG+        +R   T +             LK+    
Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +  ++  +      L                     +  + +   Y  +D +AT  L 
Sbjct: 271 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 324

Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              +P  +    L  L            Q + DRG  I +D + + Q  +     K  E 
Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 384

Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270
           +         +       +      LR+ LF   G+          ++ T    L+    
Sbjct: 385 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 444

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +L     +      +  +  ++ +DG +R     +  +     S      Q L
Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           PR E                             ++ C+IA  G +++  DL   E    A
Sbjct: 505 PRDE---------------------------SIIKGCVIAPPGYRVIAWDLTTAEVYYAA 537

Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438
            ++G+    + F N         D +       F    +           R   K +   
Sbjct: 538 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 597

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y  G            ++     Q  K+   F                        + 
Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   + +  +   + +      +                                
Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 663

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
            I     R+    ++  +   +     +              I+Q+ S D L  G  +A 
Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 714

Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                        IV+ VHD +V+   +        +
Sbjct: 715 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 92/658 (13%), Positives = 173/658 (26%), Gaps = 142/658 (21%)

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL- 105
                 +   + Q+L D T   V      +        GI +         +        
Sbjct: 409 VAADQELTRAVEQWLGDTTAAKVVDGLK-DLYHGLIQRGIVLAGV-VDDVQLSGYLVRPA 466

Query: 106 --PSSLKN-ACLALNFSEHLTKMEEG----KALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                L++     L       +   G        A   +                     
Sbjct: 467 LRSYELESQLAQHLEVEVPAAEESTGGADAHGQTALALEDEDALGGVSDAVLVREATLGR 526

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
                   + A  E   +L  L++ E  L ++   +   G  +D   +  L E +     
Sbjct: 527 ACRELSEHLRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHPID 586

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILS----H 267
           +  E      D  + +   T  L+  +F   G+                +  ++      
Sbjct: 587 QAFEQAQAQIDHEV-NLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVSPD 645

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
           +  ++    L+  R  S    I  +  L +A++ DGR+  T Q   A  TGR S      
Sbjct: 646 TAGSRFLVALMNWREYSKLKQI--VAGLRDAIAEDGRIHTTYQQTVA-ATGRLSSTGPNL 702

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-----KKLVVADLA 382
           QN+P                                +R   +         + L+ AD +
Sbjct: 703 QNIP------------------------VRTEQGQRIRDVFVVGEDTQGPFECLMTADYS 738

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++G++  I+AF  GED++    ++ F+   + V+ + R+  K M   L Y 
Sbjct: 739 QIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGLVYG 798

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                  +      L +                                           
Sbjct: 799 -----LSSYGLSQQLHIGV---------------------------------------DE 814

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
              +   +  +  GV    + + E                                    
Sbjct: 815 ARTMMSGYFERFGGVRDFLRGVVEEARSKGYTETI------------------------- 849

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
              RR    D+  D      A     R            +Q  + DI+ + M    +   
Sbjct: 850 -DGRRRYLPDLTSDN---RQARQAAERMA------LNAPIQGSAADIIKKAMIGVDRALR 899

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  ++L VHDE++ E        V  +    M         +PL       + +
Sbjct: 900 DGQLRSRVLLQVHDELIVEVAPGEREEVERILRTEMAGAAE--LTVPLDVNVGTGRTW 955


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/668 (12%), Positives = 180/668 (26%), Gaps = 148/668 (22%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKK 82
           A +   A++  D+       T++  +  +     +L    +        ++     +   
Sbjct: 344 ADLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLH 393

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
             G+D+ +  +      +R              L  +    ++    +L  +      ++
Sbjct: 394 RFGLDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDET 438

Query: 143 PPYDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQT 193
                 +    +     +         VE    L ++L          D E+ L  +   
Sbjct: 439 FYGKGVKKALPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAK 498

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           +   G  +  + +L++Q       +KL ++I +L      +      L + LF   G+  
Sbjct: 499 MEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPL 557

Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
                      T   +L            IL+    +      +  L + + +DG++   
Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTR 617

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                 ++TGR S      QN+P                                +R   
Sbjct: 618 YVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 652

Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426
           +       L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+ 
Sbjct: 653 VPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTA 712

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K +   + Y               L + +        + FE +   +++   + 
Sbjct: 713 NDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKSYIDTYFERFPGIKNYMDEVV 767

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            +  +    + L     EL           +     ++               +      
Sbjct: 768 REARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI-- 816

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                               ++    +          T                      
Sbjct: 817 -------------------LKIAMIQLDKALVAGGYQTK--------------------- 836

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                  +         IVL        E P +    +  L    M +       +PL A
Sbjct: 837 ------MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIA 877

Query: 666 EGYEAKRY 673
           +  E   +
Sbjct: 878 DENEGATW 885


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/615 (13%), Positives = 167/615 (27%), Gaps = 134/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK-NACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L       + 
Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEALKEYLK------ED 448

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +              +  + F      +   T           D E 
Sbjct: 449 LVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDIET 500

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID   +  L++    E   L+  I+ L      +      L   L
Sbjct: 501 PFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVL 559

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +   G+   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 560 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKI 618

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + +
Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 710

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +  +  +   +A+  +   +      + E      +    +   RV 
Sbjct: 732 -----KKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 786

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +        +                                          I Q 
Sbjct: 787 DFNGVNDYVKGNYLREG------------------------------------VNAIFQG 810

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 811 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + A R+
Sbjct: 870 LRVPLETSAFVANRW 884


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/664 (14%), Positives = 184/664 (27%), Gaps = 142/664 (21%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERI 78
           +   I   A+ ++D+        E          + +   Q L+   +  + H+      
Sbjct: 363 KDKKILALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHACI--IGHDLKPLLS 419

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFC 136
             K    + + + R   T +LA                 L       +       I  F 
Sbjct: 420 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EDLIPHEKIKDF- 472

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
             +          +  + A +   EY ++           L    D E     +   +  
Sbjct: 473 -KTKSKVEKLELLSVELNALKRLCEYFEKGGLEE----DLLTLARDIETPFMKVLMGMEF 527

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID      L++    E   L+  I+ L      +      L   L+   G+   + 
Sbjct: 528 QGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDF-NLNSPKQLSEVLYEKLGLP-KNK 585

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S  T +  L        +  LIL     +         L      D ++  T    G + 
Sbjct: 586 SHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 644

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   IAS     
Sbjct: 645 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 680

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I K +
Sbjct: 681 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSI 737

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+                                 + +  
Sbjct: 738 NFG--------------LVYGMGS------------------------------KKLSET 753

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  +  +   +A+  +   +      + E      +    +   RV +   +      
Sbjct: 754 LNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDYIKG 813

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
             +                                          I Q  + D+L  GM 
Sbjct: 814 NYLREG------------------------------------VNAIFQGSASDLLKLGML 837

Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  +     +   +  ++     +   +PL+   + 
Sbjct: 838 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPKLQREIQRILNDEV-YPLRVPLETSAFV 896

Query: 670 AKRY 673
           A R+
Sbjct: 897 ANRW 900


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/615 (13%), Positives = 167/615 (27%), Gaps = 134/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK-NACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L       + 
Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEALKEYLK------ED 448

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +              +  + F      +   T           D E 
Sbjct: 449 LVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDIET 500

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID   +  L++    E   L+  I+ L      +      L   L
Sbjct: 501 PFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVL 559

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +   G+   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 560 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKI 618

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + +
Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 710

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +  +  +   +A+  +   +      + E      +    +   RV 
Sbjct: 732 -----KKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 786

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +        +                                          I Q 
Sbjct: 787 DFNGVNDYVKGNYLREG------------------------------------VNAIFQG 810

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 811 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + A R+
Sbjct: 870 LRVPLETSAFVANRW 884


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/615 (13%), Positives = 167/615 (27%), Gaps = 134/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK-NACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L       + 
Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEALKEYLK------ED 448

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +              +  + F      +   T           D E 
Sbjct: 449 LVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDIET 500

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID   +  L++    E   L+  I+ L      +      L   L
Sbjct: 501 PFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVL 559

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +   G+   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 560 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKI 618

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + +
Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 710

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +  +  +   +A+  +   +      + E      +    +   RV 
Sbjct: 732 -----KKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 786

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +        +                                          I Q 
Sbjct: 787 DFNGVNDYVKGNYLREG------------------------------------VNAIFQG 810

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 811 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + A R+
Sbjct: 870 LRVPLETSAFVANRW 884


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 171/686 (24%), Gaps = 150/686 (21%)

Query: 11  RSPQPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQYLRDETVM 67
            S + +    V         I   A+       +    +   ++       +        
Sbjct: 318 FSDEDIFYFEVLRDNYHREDIIGFAW----GHGEQIYASTDLSLLSTDLFKKVFEKP--- 370

Query: 68  CVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            +   + ++     +    LGI++ +  +                      L  +    +
Sbjct: 371 -I---ATYDFKRSKVLLSHLGIELVAPSYD---------------ARLANYLLSNVEDNE 411

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFK 175
           +     L       + DS      +    +   L G   ++                   
Sbjct: 412 LTTIARLFTDISLEADDSIYGKGVKRAVPEKEVLLGHLARKVKVLLDSRAPMVEKLADHD 471

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           ++    + E  L  +   +   G +++   +  + E      + L ++I  +      + 
Sbjct: 472 QIDLYHEIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF-NI 530

Query: 236 RQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                L   LF    +             T   +L            IL+    +     
Sbjct: 531 NSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQST 590

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + +DG++         ++TGR S      QN+P                   
Sbjct: 591 YVIGLQDYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------- 630

Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R           L+ +D + IE RVLA I+G++  I AF  G DI+
Sbjct: 631 -----IRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIH 685

Query: 410 VTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +T  + F       V+   R   K +   + Y               L + +       
Sbjct: 686 TSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKSYI 740

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            + FE +   +++   +  +  +    + L     EL           +     ++    
Sbjct: 741 DTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFA 791

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                          ++   ++               
Sbjct: 792 ERTAINSPIQGSAADI---------------------LKIAMINLDNALQAGGFK----- 825

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                                  + +         IVL        E P+    ++  L 
Sbjct: 826 ----------------------AKMLLQVHDE---IVL--------EVPNDELTAIKKLV 852

Query: 649 S-LMTKNPSWAKGLPLKAEGYEAKRY 673
              M      A  +PL+A+    + +
Sbjct: 853 KDTMEAAVDLA--VPLRADENAGQSW 876


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 187/699 (26%), Gaps = 142/699 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQS-------AMP 54
            + +D ET         GV  Y +  VI   +    +                     + 
Sbjct: 139 IIAVDTETT--------GVDVYTD--VIVGLSLTLPNADWHVYIPVEHVDCEQLSRAYVL 188

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS------ 108
             L     DE++  V HN++F+  + ++  G D+    W  T           S      
Sbjct: 189 EGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAW-DTMTAMHLLNENESDRALGG 246

Query: 109 -----LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                LK+     L           G+            +  Y             F  Y
Sbjct: 247 AGSFKLKDLAPKYLKTPADTFDALFGRNA-QFKEVPLDIALVYAAKDTELTWKLYEFQRY 305

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
               +    + ++ +      E  L  +   +   GY +DLD   +  E + +  ++L +
Sbjct: 306 HMAKIPTILDYYQTV------EIPLLYVIVDLEANGYILDLDFAKEYGEKLHKRAEELRK 359

Query: 223 DIVK-----LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
           ++V             +   T+ +R  L    G DL +M        L            
Sbjct: 360 ELVAELTPFHEGDEPINLNSTHQMRPALSKAIGKDLSNMDAK---KTLKPLKDDYEIIAK 416

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           +L        +   ++TL    +       +      + TGR+S                
Sbjct: 417 LLEYKNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMGTVTGRFSS--------------- 461

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                  +           +       R       GK LV AD    E R +A+++GE  
Sbjct: 462 ------GKDEEDKTQQGFNVQNQPPEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEPV 515

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKE-------QRAIGKVMELALGYQGGAKVFKT 450
            I AF    D Y T  +  +  P ++V K        +R   KV  LA  Y         
Sbjct: 516 LINAFLEERDPYATMASNFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLAD 575

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD-KLIGTACELVKKA 509
           M     L + +          F    +  +     ++   +       L      L    
Sbjct: 576 M-----LGVGKKEATEFKEELFGSMPKLSAWLKENEEFVRKNGYVWADLNARKRRLPDAK 630

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
              K+    +                                                  
Sbjct: 631 LPRKNIPYGKWNDP---------------------------------------------K 645

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDI 624
           Y D +   S +N A  Q           T   VQ  S       M  A      K G+ +
Sbjct: 646 YDDARKHNSRINRALRQ----------ATNARVQGSSSIQTKVTMIKAHEYCANKPGWAL 695

Query: 625 VLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLP 662
             TVHDE++ E P+   +     +  +M  +  W   +P
Sbjct: 696 WSTVHDELIFEVPEDFTWEEAQEIRDIMLNSYRWGDVVP 734


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/686 (11%), Positives = 174/686 (25%), Gaps = 150/686 (21%)

Query: 11  RSPQPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQYLRDETVM 67
            S + +    V         I   A+       +    +   ++       +        
Sbjct: 318 FSDEDIFYFEVLRDNYHREDIIGFAW----GHGEQIYASTDLSLLSTDLFKKVFEKP--- 370

Query: 68  CVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            +   + ++     +    LG+D+ +  +                      L  +    +
Sbjct: 371 -I---ATYDFKRSKVLLSHLGLDLVAPSYD---------------ARLANYLLSNVEDNE 411

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFK 175
           +     L       + DS      +    +   L G   ++                   
Sbjct: 412 LTTIARLFTDISLEADDSIYGKGVKRAVPEKELLLGHLARKVKVLLDSRAPMVEKLADHD 471

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           ++    + E  L  +   +   G +++   +  + E      + L ++I  +      + 
Sbjct: 472 QIALYHEIELPLANILAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEF-NI 530

Query: 236 RQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                L   LF    +             T   +L            IL+    +     
Sbjct: 531 NSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQST 590

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            +  L + + +DG++         ++TGR S      QN+P                   
Sbjct: 591 YVIGLQDYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------- 630

Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R     S     L+ +D + IE R+LA I+G++  I AF  G DI+
Sbjct: 631 -----VRLEQGRLIRKAFTPSQEDAVLLSSDYSQIELRLLAHISGDEHLIAAFNEGADIH 685

Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +T  + F     + V+   R   K +   + Y               L + +       
Sbjct: 686 TSTAMRVFGIEKAEDVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKSYI 740

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            + FE +   +++   +  +  +    + L     EL           +     ++    
Sbjct: 741 DTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFA 791

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                          ++   ++               
Sbjct: 792 ERTAINSPIQGSAADI---------------------LKIAMINLDNALQAGGFK----- 825

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                                  + +         IVL        E P+T   +V  L 
Sbjct: 826 ----------------------AKMLLQVHDE---IVL--------EVPNTELAAVKKLV 852

Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673
              M      A  +PL+A+    + +
Sbjct: 853 KETMEVAVDLA--VPLRADENAGQSW 876


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/634 (14%), Positives = 177/634 (27%), Gaps = 144/634 (22%)

Query: 58  LQYLRDE------TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110
           L++L +        V  + H+        K    + + + R   T +LA           
Sbjct: 381 LEFLENAFSQMLQHVQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 440

Query: 111 N-ACLALN---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                 L          K  + K+ + +  +               + A +   EY ++ 
Sbjct: 441 EVLKEYLKEEWIPHEKIKDFKIKSKVEKLEQ-----------LDMELNALKRLCEYFEKG 489

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                     L    + E     +   +  +G++ID     +L++    E   L+  I++
Sbjct: 490 GLEE----NLLSLAKEVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILE 545

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
           L      +      L   L+    +   + S  T +  L        +  LIL     + 
Sbjct: 546 LIGVDF-NLNSPKQLGEILYEKLKLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNK 603

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                   L      D ++  T    G + TGR S      QN+P               
Sbjct: 604 LFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP--------------- 647

Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                            +R   IAS     L+  D + IE R+LA  + +   ++AF  G
Sbjct: 648 ---------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKG 698

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            DI++ T    F      ++KE+R+I K +                    G+        
Sbjct: 699 RDIHLETSKALFGGD---LAKEKRSIAKSINFG--------------LVYGMGS------ 735

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                    + +    +     +   +A+  +   +      + 
Sbjct: 736 ------------------------KKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMK 771

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E      +    +   RV +            +                           
Sbjct: 772 EEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREG------------------------ 807

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTP 640
                          I Q  + D+L  GM   ++         ++L VHDE++ E  +  
Sbjct: 808 ------------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKN 855

Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   +  ++     +   +PL+   + AKR+
Sbjct: 856 ALELQQEIQRILNDEV-YPLRVPLETSAFVAKRW 888


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/656 (12%), Positives = 167/656 (25%), Gaps = 133/656 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 383 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 433

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 434 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 485

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 486 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 545

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 546 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 604

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 605 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 663

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +R     S     L+ +
Sbjct: 664 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSQEDAVLLSS 699

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F     + V+   R   K +   
Sbjct: 700 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKAVNFG 759

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 760 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 814

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                EL           +     ++               +                  
Sbjct: 815 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADI-------------- 851

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                   ++   ++                                      + +    
Sbjct: 852 -------LKIAMINLDNALQAGGFK---------------------------AKMLLQVH 877

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                IVL        E P+    ++  L    M      A  +PL+A+    + +
Sbjct: 878 DE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLRADENAGQSW 920


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/661 (13%), Positives = 185/661 (27%), Gaps = 145/661 (21%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSD------------LLQYLRDETVMCVAHNSLFERILF 80
             ++ D   +   D T  ++   +            +++ L D ++  + +N     I  
Sbjct: 367 ITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFL 426

Query: 81  KKTLGIDIPSKR-WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
              L  +I S        ++        +       L+ +E +            + +  
Sbjct: 427 LNFLRTEITSASCIDDIMLMHYILSAGKN------DLSLNEIIQTY------NKSYSEQY 474

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            ++              +LF               K L    + +  +  + + I + G 
Sbjct: 475 SENKVCWLKNTFDNLMSELFKN-------------KLLHCYYEIDLPICYILRNIENNGI 521

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----V 254
           +I++ L+ +L   +  + + L++ I K+      +      L   LF +  +        
Sbjct: 522 KINVPLLKELSAQLKHKIELLEQQIYKICGQEF-NIASPKQLGEILFDVLKLPHAKVSQK 580

Query: 255 DMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
             S  T   +L + +   +   DL+L     +      ++TL   ++++     T     
Sbjct: 581 TKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQT 640

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           ++ T R S      QN+P                                VRS  +A  G
Sbjct: 641 STTTSRLSSHSPNLQNIP------------------------IRSEYGLKVRSAFVAPQG 676

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            K++ AD + IE R+L++ A  +     F  GEDI+ +T A+ F    D+V++E R   K
Sbjct: 677 SKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKAK 736

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
            +   + Y               L++            F+++     +    +    E  
Sbjct: 737 AINFGVIYG-----ISAFGVAKQLNISNTEAAQYINHYFQEYPSIRQYMDETKKFAVENG 791

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +IG  C +           +                     S              
Sbjct: 792 YVKNMIGRRCYI---------PLINSSNLTTRNFAQRAAINAPIQSTA------------ 830

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                 I +    +L+YS                                      +   
Sbjct: 831 -SDIAKIAMIQYEKLIYSKYPA----------------------------------IKL- 854

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672
           +                 +V E P+    +   L    M   P      PLK E      
Sbjct: 855 LLQVHDE-----------LVFELPNELVDTACNLIKCTMENIP--YFSFPLKVELKIGDN 901

Query: 673 Y 673
           +
Sbjct: 902 W 902


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/626 (13%), Positives = 172/626 (27%), Gaps = 173/626 (27%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNG-LPSSLKNA 112
           +   L D+++  + H           +  I  P   ++ +    V+A     L + L+  
Sbjct: 333 VQDLLTDQSIKKIFH-----------SDNIPHPDPANESFEDLKVIAYPLNTLNTDLEYL 381

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEATR 171
                                                A H +  +L+         E   
Sbjct: 382 FSHYLGETSP--------------------------EAFHKRLNELYDKLRNAMFTEKVL 415

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            L+ ++         L  + + +   G  +D++ +L L   I+ + ++++  I     G 
Sbjct: 416 TLYYKVDK------PLINVIKHMEKNGISLDVEQLLSLSTQISGKLEEIENKIFDTA-GK 468

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLILNRLASSG 286
             S +    L   LF    I +    +        + + S S+      D +L+      
Sbjct: 469 TFSLQSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGYEIADYLLSWRHYIK 528

Query: 287 SAILKLNTLSEAVSSDGRLR--GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                ++ L   V+   +     T      + TGR S      QN+PR+           
Sbjct: 529 LKTAYIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNIPRE----------- 577

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R    A  G   + AD + IE R+LA+IA  +    A A+
Sbjct: 578 -----------------KNIRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALAS 620

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D++  T ++ F T  DK++   R   K +   + Y               L       
Sbjct: 621 GTDLHTLTASQIFKT--DKITPNLRNKAKAVNFGIVYG-----ITNFGLSKQLA------ 667

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +         + +  ++  +      +
Sbjct: 668 ---------------------------------ISKEEAASYIQKYFDEYPEIKSYMNHI 694

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                        ++                          R+    ++  D   +   +
Sbjct: 695 RNQAKKDTYVKTIMN--------------------------RKCPIQNINSDNRAI---S 725

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---YDIVLTVHDEIVSETPDTPY 641
               R            +Q  + DI+   M    +       +V+ VHDE+V E      
Sbjct: 726 LIAERSAINAP------IQGTAADIIRAAMVRMAQEKELLSHMVMQVHDELVFELETDAI 779

Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAE 666
                 +  +M +      G+PL  E
Sbjct: 780 QQLAKKIKQIMEEP----HGIPLLVE 801


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 101/648 (15%), Positives = 180/648 (27%), Gaps = 136/648 (20%)

Query: 37  WDDEPVKLWDRTEQSAM----PSDLLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPS 90
             +  +          M     ++L   L+    + VA     +   F +       I  
Sbjct: 378 VREGNIFFIGVDGDELMCKVTAAELAAGLQSAKTIVVA-----DVKSFLRADDAWGQIQL 432

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            RW   S+ A                 +      +  G+ L     +   D+        
Sbjct: 433 FRWFDLSLAAYLLNPEE------RNYAWDRLRAMLFAGEELPDAVDEVHPDAQGMAALAL 486

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
            HV   ++  +    D E T  L          E  L  +   +   G  IDLD      
Sbjct: 487 MHVLGPRI--KSAGLD-ELTANL----------EIPLIPVLADMEKAGITIDLDAFADFL 533

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILS 266
             + +   +L   I +       + R +  +   LF   G+         +  T  S+L 
Sbjct: 534 TEVNERINELTRVIHERAGEPF-NIRSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLE 592

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
             +        IL            L  L + V+++GR+        A+ TGR S     
Sbjct: 593 KLSGQHEIITDILEYRKMEKLRSTYLEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPN 651

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
            QN+P                          G     +R+C  A  G +L  AD + +E 
Sbjct: 652 LQNIP------------------------IRGDQGKRMRACFTAGEGLRLAAADYSQVEL 687

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA  +G+   + AF + EDI+  T A  F+     V+ ++R   K +   L Y  G +
Sbjct: 688 RVLAHFSGDPALVSAFEHDEDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQ 747

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L ++           FE  +  +  +  + +Q  E      L G      
Sbjct: 748 KL-----SRELGIKINEAKEFIAKYFEKLDVLKEFYDSVVEQGREKGYVTTLSGR----- 797

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               R     +      +               +   A++ ++ M +   +  I     R
Sbjct: 798 ----RRLLPELHSTSPQILSQARRQAINTVIQGSA--ADIIKMAMIKVADNAEIKHLGGR 851

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
            +                                                          
Sbjct: 852 LI----------------------------------------------LQIHD------- 858

Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               E++ E P+     +G L    M    + A  +PLK +    + +
Sbjct: 859 ----ELLVEGPEENIEEIGKLLQKDMQTVATLA--VPLKVDLGLGRNW 900


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 178/661 (26%), Gaps = 144/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +  L+ L+   V  V H+        K
Sbjct: 352 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFLKMLQ--HVQIVGHDLKPLLSFLK 408

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L               I  F   +
Sbjct: 409 AKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTKA 462

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                         +  + F +    +               + E     +   +  +G+
Sbjct: 463 EKLELLSVELNALKRLCEYFEKGGLEEGLLALA--------KEIETPFMKVLMGMEFQGF 514

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I+ L      +      L   L+    +   + S  
Sbjct: 515 KIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEVLYEKLELP-KNKSHS 572

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 573 TDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 631

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 632 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 667

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I K +   
Sbjct: 668 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSINFG 724

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 725 --------------LVYGMGS------------------------------KKLSETLNI 740

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +   +        +
Sbjct: 741 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFNGVNDYIKGNYL 800

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 801 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 824

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + A R
Sbjct: 825 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFVANR 883

Query: 673 Y 673
           +
Sbjct: 884 W 884


>gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1359

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 179/659 (27%), Gaps = 122/659 (18%)

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG------LPS 107
             + +++ L D+ +  V+ N+          L   +   R I   + A  +          
Sbjct: 767  LAFMVRLLEDDNIKKVSFNAKESIKPMLW-LNQWMQPSRLIDPKIAAWVHNTEAEEMKGF 825

Query: 108  SLKNACLALNFSEHLTKME---EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             L      L  ++   K       K L +      +     D   +      +       
Sbjct: 826  ELTFLYHHLVENKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLR--NSSLV 883

Query: 165  RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD-ED 223
                    L   L      E  +  +   +   G     +        +    + L  + 
Sbjct: 884  MIALEQLLLQLNLQAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKW 943

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +      +S      ++ +L     I + +  + TL  ++      Q  KD++  R  
Sbjct: 944  NTEFKKDSAKSLSSPVQIKEFLLTQYKITVSNTGKQTLVDLIKKYPDVQYIKDILEYRHC 1003

Query: 284  SSGSAILKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQ----ERSEE 338
            +       +    + V  +       Q+ +  + TGR S      QNLPR       ++E
Sbjct: 1004 NKIL-TTYVQPYLDIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALNVNYNDE 1062

Query: 339  ILTQTIQALNRGETIADPLGLASDCV----RSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                 +   N  E   D +G  +  +    R    A  G  L+  D + IE R++   + 
Sbjct: 1063 DGDSELADFNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSK 1122

Query: 395  EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
            +    + F N  D++          P+DKV+  +R   K +   + Y  G          
Sbjct: 1123 DQKLEEYFKNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSLS----- 1177

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                      K+           +  K 
Sbjct: 1178 ---------------------------------------QILKVSKERASQFINDFLNKF 1198

Query: 515  QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            Q +      + E    +  +                         I   + RR +   V 
Sbjct: 1199 QSIRNY---IEEEKKKIRLKK-----------------------FIKTIAGRRRLLPHVN 1232

Query: 575  GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---------------K 619
                  N +   L +          +I+Q  + DI+ E M N                  
Sbjct: 1233 SQDP--NQSHRALRQT-------VNSIIQGSASDIIKEAMFNIHVYLSQLSKEYKSLDPH 1283

Query: 620  NGYDIVLTVHDEIVSETP-----DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            N   ++L +HDE++ E P     D        +  +M         +P+     + K +
Sbjct: 1284 NDPRLLLQIHDELIYEIPDAMLNDKESEVCINIKRIMESVYQDDLTVPIAVTMSKGKSW 1342


>gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 664

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 193/716 (26%), Gaps = 138/716 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTE--QSAMP-SDL 57
            ++ ID ETR    L K+G  A     + IT  ++A +D P             +P   +
Sbjct: 31  KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89

Query: 58  LQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLART---NGLPSSL 109
           L YLR +  +     V  N  ++        GI+    R+     +            S+
Sbjct: 90  LAYLRAQAKVFTGDLVGANLPYDLDFLAG-DGIEFERVRYFRDIQIADPLICELHDSYSM 148

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +       F                  + +      D  +   +   +  G+Y + D   
Sbjct: 149 QAIAERWGF----------YGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRL 198

Query: 170 TRELFKR---------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              + +R         L  + + E  L  +   +  RG RID D +  ++    ++  + 
Sbjct: 199 PLNILRRQEREIDEQDLWGVYNLESKLLPILTRLRRRGVRIDCDRLDMIERWALEKETEA 258

Query: 221 DEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAK 275
              +  +      +    +   +   L    GI L   S       K +L   +      
Sbjct: 259 LAQVRSITGHRIAVGDVWKPEVIAPAL-EHIGIKLNKTSQGKPSIDKELLGSIDHP--VA 315

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------YGASRTGRWSGCV 324
            L+      +       +++ + +  +GRL GT                 +  GR S   
Sbjct: 316 GLLERARKVNKLRTTFASSVRDHMV-NGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEH 374

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              Q  P                             +   RS  +   G+     D +  
Sbjct: 375 PNLQQQP------------------------ARDEFAMMWRSIYLPEEGQHWASNDYSQQ 410

Query: 385 EARVLAWIAG-EDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           E R+    A      I   A        D Y        +  +  ++  +R   K + L 
Sbjct: 411 EPRMAVHYACLAKDLIGHKAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLG 470

Query: 439 LGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           L Y  G     + +     + ++     +   ++ E            +           
Sbjct: 471 LSYGMGGAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEA---------- 520

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
             G   + +   +  K   + +L K        V                          
Sbjct: 521 -AGPEGQALLDTFDQKVPFIKKLAKACEARAKAVGY------------------------ 555

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             I   S RR  +   K                  +  K    ++Q  S D     M   
Sbjct: 556 --ITTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVAC 600

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G DI++ VHDEI     D           +M         LP K +    + +
Sbjct: 601 AEAGLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSW 652


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 84/499 (16%), Positives = 143/499 (28%), Gaps = 121/499 (24%)

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +   +   G  +D++ +  L+E + +    L+E I     G   + +    +   
Sbjct: 440 HPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEEGIA-REAGAQVNLQSPKQVAWL 498

Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           LF   G+  V  ++         L+ +            +IL     S      +N   E
Sbjct: 499 LFERLGLPPVKRTKTGLSTDVGVLEELSRLPEPLGRVPSMILEHREISKLITAFVNPFLE 558

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
              S G +R T    G + TGR S      QNLP+                         
Sbjct: 559 Q-GSSGVIRSTFDQTG-TGTGRLSSRDPNVQNLPQF------------------------ 592

Query: 358 GLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
           G  +   R C++    G   V AD + IE RVLA ++GE+  I+AF  G D++  T +  
Sbjct: 593 GHWAVEFRRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWI 652

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +      VS EQ                                              + 
Sbjct: 653 YGVDPQAVSPEQ--------------------------------------------RRFA 668

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  +  L         A +  +  +    V + + +   GV +  + + E          
Sbjct: 669 KVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSALPGVREFTRRMVEQAKARGYAAT 728

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +   R  +                                +        + R       
Sbjct: 729 LMGRVRPLSEVS-----------------------------TVEGRGAGAIDRVAI---- 755

Query: 597 LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLM 651
                +Q  + DI  + M    +        +VL VHD IV   P+     V  L   +M
Sbjct: 756 --NTPIQGSAADIARKAMVELHRALAGGDCRMVLQVHDSIVCSVPEGMASRVAELMREVM 813

Query: 652 TKNPSWAKGLPLKAEGYEA 670
               S    +PL  E    
Sbjct: 814 EGAAS--LSVPLVVEVKTG 830


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 87/614 (14%), Positives = 172/614 (28%), Gaps = 130/614 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKME 126
            + H+        K    + + + R   T +LA                      L +  
Sbjct: 337 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEY-----LQEDL 391

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                I  F   +             + A +   EY ++           L      E  
Sbjct: 392 ILHEKIKDFKTKNKAEQLERLNLE--LNALKRLCEYFEKGGLEE----NLLSLARGIEMP 445

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
              +   +  +G++ID     +L++    E K L+  I+ L      +      L   L+
Sbjct: 446 FMKVLINMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQLGEVLY 504

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
               +   + S  T +  L        +  LIL     +  +      L      D ++ 
Sbjct: 505 EKLNLP-KNKSHSTDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLKDKDDKIH 563

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T    G + TGR S      QN+P                                +R 
Sbjct: 564 TTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSSKGLLIRK 598

Query: 367 CIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             I+S     L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++
Sbjct: 599 GFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLA 655

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
           KE+R+I K +                    G+                            
Sbjct: 656 KEKRSIAKSINF--------------GLVYGMGS-------------------------- 675

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                + +    +  +  +   +A+  +   +      + E      +    +   RV +
Sbjct: 676 ----KKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLGRYRVFD 731

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
              +        +                                          I Q  
Sbjct: 732 FNGVNDYVKGNYLREG------------------------------------VNAIFQGS 755

Query: 606 SRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAK 659
           + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     +A 
Sbjct: 756 ASDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALKLQQEIQGILNHEV-YAL 814

Query: 660 GLPLKAEGYEAKRY 673
            +PL+   + AKR+
Sbjct: 815 RVPLETSAFIAKRW 828


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 90/631 (14%), Positives = 179/631 (28%), Gaps = 138/631 (21%)

Query: 58  LQYLRD--ETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110
           L++L +    ++     + H+        K    + + + R   T +LA           
Sbjct: 393 LEFLENAFSQILQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 452

Query: 111 N-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +       I  F   +             + A +   E+ ++    
Sbjct: 453 EVLKEYLK------EDLIPHEKIKDF--KTKSKAEKSEQLNMELNALKRLCEHFEKGGLE 504

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                  LI   D E     +   +  +G++ID     +L++    E   L+  I+ L  
Sbjct: 505 E----DLLILARDIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIG 560

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   L+   G+   + S  T +  L        +  LIL     +    
Sbjct: 561 VDF-NLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFN 618

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L      D ++  T    G + TGR S      QN+P                  
Sbjct: 619 TYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP------------------ 659

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   IAS     L+  D + IE R+LA  + +   ++AF  G DI
Sbjct: 660 ------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDI 713

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++ T    F    ++++KE+R+I K +                    G+           
Sbjct: 714 HLETSKALFG---EELAKEKRSIAKSINF--------------GLVYGMGS--------- 747

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                 + +    +     +   +A+  +   +      + E  
Sbjct: 748 ---------------------KKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMREEI 786

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               +    +   RV +   +        +                              
Sbjct: 787 LKTSKAFTLLGRYRVFDFNGVNDYIKGNYLREG--------------------------- 819

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFS 643
                       I Q  + D+L  GM   ++         ++L VHDE++ E  +     
Sbjct: 820 ---------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPE 870

Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +  ++     +   +PL+   + AKR+
Sbjct: 871 LQQEIQRILNDEV-YPLRVPLETSAFIAKRW 900


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 84/615 (13%), Positives = 165/615 (26%), Gaps = 134/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125
            V H+        K    + + + R   T +LA                 L         
Sbjct: 409 IVGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLREYLKEELIP--- 465

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +              +  + F +    +               + E 
Sbjct: 466 ---HEKIKDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALA--------REIET 514

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID     +L++    E   L+  I+ L      +      L   L
Sbjct: 515 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNILECQILDLIGVDF-NLNSPKQLGEIL 573

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +   G+   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 574 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 632

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 633 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 667

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   ++AF  G DI++ T    F      +
Sbjct: 668 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---L 724

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 725 AKEKRSIAKSINFG--------------LVYGMGS------------------------- 745

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +  +  +   +A+  +   +      + E      +    +   RV 
Sbjct: 746 -----KKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 800

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +        +                                          I Q 
Sbjct: 801 DFNGVNDYIKGNYLREG------------------------------------VNAIFQG 824

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 825 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 883

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + A R+
Sbjct: 884 LRVPLETSAFVANRW 898


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 106/727 (14%), Positives = 213/727 (29%), Gaps = 137/727 (18%)

Query: 2   SKLFIDIETRSPQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             + IDIET       K G +  Y     I L   A+D   + L+   E++    + L+ 
Sbjct: 10  KIVGIDIETW---DGKKGGSLDPY--SGKIALVQIAYDRNNIVLYRPWEKNF--EEALKV 62

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--------LKNA 112
           L D+ V+ V HN  F+   F      +I  +    T + ++               L+  
Sbjct: 63  LSDKDVLKVGHNLKFDLKFF---YMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEAL 119

Query: 113 CLALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYD---------CTRANHVQAWQLFGE 161
              L   E       GK      +F          +                +  +   E
Sbjct: 120 KDDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEAQKE 179

Query: 162 YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLK---- 208
           Y   DV+  ++L   L               E     +   +   G +ID +   K    
Sbjct: 180 YAINDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVKIDKEGWKKKMEK 239

Query: 209 ----------------LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
                            ++ ++++ +K+   + +  +    +      +        G+ 
Sbjct: 240 ENQELLELEKELKKEIYEKFVSKQSEKMMVGLFEDAEYEKINLNSPLQMAKIF----GLP 295

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            V          L+   I        +     +           E ++ + RL       
Sbjct: 296 NVSK--------LTLEKIEDPTIKKYVEYKKKAKLVTTYSKEYLEKLTENNRLMSDYSQT 347

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR S      QN+P                                 +  I A  
Sbjct: 348 K-TATGRISSSNPNLQNVP------------------------------SWFKRYITAEE 376

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAI 431
           G   V AD + +E R+LA+++G++  I +  N +D++     K +  P D+    E R  
Sbjct: 377 GYVPVFADYSQVELRILAYLSGDEAMIDSC-NSKDMHSENARKIYKIPPDQPVPPELRKK 435

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +  A+ Y   A          G+              F  + + +           +
Sbjct: 436 AKTVSFAIPYGSSAYGLV----VRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSAKSA-Q 490

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
             +    +G             ++ +     +  +G   ++         +   +  ++ 
Sbjct: 491 NGITRDALGRV---------RNYKKI--YISEDEKGALKILMFRLPSGISKDEFIKEVLE 539

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
           +   +D         ++   D +     ++         +    +   + +QA S  I  
Sbjct: 540 KNSFKDAA-------KIFGMDEQMLQLAISAYEKTKKLAKI-AREGQNHPIQATSASITK 591

Query: 612 EGMKNATK----NGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKN-PSWAKGL--P 662
             M +  +     GY  + LTVHD I  E        ++  +  +M +  P    G+  P
Sbjct: 592 TAMVDLLEYLSMTGYGYMTLTVHDSIFFEIKKEFIFDALPKIKEIMEQAGPKVVPGIITP 651

Query: 663 LKAEGYE 669
           +  E  E
Sbjct: 652 VDVEVGE 658


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 181/658 (27%), Gaps = 134/658 (20%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I       + + V  +D            Q+L D     + +++    +   +   I +
Sbjct: 329 EIIGFGI-VNSKGVFYFDYIHAKH-DKLWHQFLNDNKYQKLTYHAKSLIVALAR-DNIFV 385

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPP 144
            +  +    +        +   +    +N  E       +   GK +  +     I    
Sbjct: 386 QNIEY-DMMLAGYVYNSNAK-NSLDTYINLFEKKQILTDEFFYGKGVKKQIPADVIKLGH 443

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           +   +A+++   +              +L+  +      E  +      +   G ++D  
Sbjct: 444 FIGEKASYIHKLRP-KIIELLKTNQQYDLYHNI------ELPIAFALARMEINGVKVDQY 496

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            +      I +  ++L+ +I  +    I +      +   LF    +        T +  
Sbjct: 497 ELTTQTLRIEKIVQELNNEINDIAQKEI-NPNSPKQISELLFQNFSLPDRKKG-STAQET 554

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L       +    IL+           L  + + + +DG++    +    + TGR S   
Sbjct: 555 LEEIKNNHVIIPKILDYRKYQKLYSTYLKGMEKYIFADGKVHTIYKQT-LTNTGRLSSVE 613

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAG 383
              QN+                                 VR   + +S    L+  D + 
Sbjct: 614 PNMQNI------------------------SIRDHIQKEVRKIFVVSSPDNILLSCDYSQ 649

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R+LA ++ +   I AF N EDI+  T  K FN   D+++   R   K +        
Sbjct: 650 IELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSAKAVNF------ 703

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   A    +     
Sbjct: 704 --------GIIYGISDF------------------------------GLATDLNISVAKA 725

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           + +   +  +   +        E            + +R                     
Sbjct: 726 KAIINNYYQQFPTIKAFIDKQVEFCKQNGYVTTIFNRKR--------------------- 764

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNAT---- 618
                 Y     D +Y+         +R +G ++  N  +Q  + DI+   +KN      
Sbjct: 765 ------YVSEINDRNYM---------QREFGKRIAMNMPIQGSAADIIKIALKNIDQEFL 809

Query: 619 --KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
                  I+  +HDE++ E P      V  +  + M  +      + L  +      +
Sbjct: 810 KLNLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTK--LDVKLIVDMKTGLSW 865


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/676 (13%), Positives = 169/676 (25%), Gaps = 132/676 (19%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
           IET+S      +G+    +         A            E  A  +   ++L  +   
Sbjct: 336 IETQSAASPHGLGLTVETQDGKPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-P 393

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTK 124
            V  ++  +    ++  G+ +    +    V            SL          +    
Sbjct: 394 KVMSDAKVQVKAMRRA-GLRVQGLAF-DVLVAGWLLRPGFTDKSLAALVSRYLMEDLPEP 451

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                         +    P        V+AW                    L  + D E
Sbjct: 452 D-------------ANQLVPETEALTAPVEAWYTLRVEHALREVLDER---TLGVMVDIE 495

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
               L+   +  RG   D   + +L   + +    L E         I +      L+  
Sbjct: 496 MPTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEIGKEI-NLGSPKQLQEV 554

Query: 245 LFLITGIDLV---DMSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAV 299
           LF   G+           T    L+           DL+L    +S      + TL   +
Sbjct: 555 LFDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLR-QIIQTLERGI 613

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             D R+  T      + TGR S      QN+P                            
Sbjct: 614 GDDERIHTTYV-QTGTTTGRISSNDPNLQNIP------------------------VRTE 648

Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
               +RS I    G   L+ AD + IE R++A ++G+   I+AF  GED++    +  F 
Sbjct: 649 EGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFG 708

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
                VS   R   K M   L Y               L +         T  F  +   
Sbjct: 709 VEPADVSPAMRTKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGAV 763

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
             +   + ++       + + G                +    + L +            
Sbjct: 764 RDYLRQVVEEARAAGYTETIFGRRRP---------FPDLNSPNRVLRDNAERAALNAPIQ 814

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            +                          ++    ++ D                      
Sbjct: 815 GSAADI---------------------MKIAMIRIEADMRE------------------- 834

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657
                   RD+    +              HDE++ E     + ++  +    M      
Sbjct: 835 --------RDMASRMLLQV-----------HDELILEVAPGEWDALQAIVTDRMAHAAD- 874

Query: 658 AKGLPLKAEGYEAKRY 673
              +PL+ +      +
Sbjct: 875 -LRVPLEVQVGRGDSW 889


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/656 (11%), Positives = 162/656 (24%), Gaps = 133/656 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYVSTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 V-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGTKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                EL           +     ++               +                  
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADI-------------- 807

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                   ++   ++                                        +    
Sbjct: 808 -------LKIAMINLDKALQAGGFRAKC---------------------------LLQVH 833

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 834 DE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/516 (14%), Positives = 157/516 (30%), Gaps = 63/516 (12%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSK 91
             +   D    +     ++     + +     +    + +N         + L   +  +
Sbjct: 365 FGFVICDGERNIVLLNHENTDYGSINKVYEKLKEKSVIGYNIK-------EYLKKGMGYR 417

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           ++    +     G  SS             +     G  L     +     P        
Sbjct: 418 QYFDIMLAWYVLGTESSQD-------LENIIFSEL-GVNLEKFEEQFKKRKPEEISEEEK 469

Query: 152 HVQAWQLFGEYCKRDVEATRELFKR-LIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209
               W+      +        L    L  + +  E  L  +  ++   G +I+ +     
Sbjct: 470 TQFLWERAFYVKELKEILENRLKSEDLTNVFENLENKLVPVLASMEMYGIKINKEYFENY 529

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266
           ++ + +  +KL+ +I     G   +      L   LF   GI+ V  ++    T   +L 
Sbjct: 530 KKELQENIEKLEGEIY-SLLGEAFNIGSPKQLAEILFDKMGIEPVKKTKTGYSTDVEVLE 588

Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              +      + +L     +      +  L +      R+  T    G + TGR S    
Sbjct: 589 ELALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEKDRIHTTFNQNG-TSTGRLSSTNP 647

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QN+P                                +R   I+  G  LV  D + IE
Sbjct: 648 NIQNIP------------------------VRTDEGIKIRKGFISEEGWSLVSFDYSQIE 683

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGG 444
            RVLA ++ ++  + A+   +D++  T  K  F    ++V++E+R+I KV+  ++ Y   
Sbjct: 684 LRVLAELSKDENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKT 743

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                       L +     ++   + FE + + +     + +        + L GT   
Sbjct: 744 P-----FGLSKELKIPVADASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGT--- 795

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                 R   +G+    K+L      +         
Sbjct: 796 ------RRYIKGINSSNKNLQAQANRMAVNTVVQGT 825


>gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6]
          Length = 664

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 194/716 (27%), Gaps = 138/716 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTE--QSAMP-SDL 57
            ++ ID ETR    L K+G  A     + IT  ++A +D P             +P   +
Sbjct: 31  KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89

Query: 58  LQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLART---NGLPSSL 109
           L YLR +  +     V  N  ++        GI+    R+     +            S+
Sbjct: 90  LAYLRAQAKVFTGDLVGANLPYDLDFLAG-DGIEFERVRYFRDIQIADPLICELHDSYSM 148

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +       F                  + +      D  +   +   +  G+Y + D   
Sbjct: 149 QAIAERWGF----------HGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRL 198

Query: 170 TRELFKR---------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
              + +R         L  + + E  L  +   +  RG RID D +  ++    ++  + 
Sbjct: 199 PLNILRRQEREIDEQDLWGVYNLESKLLPILTGLRRRGVRIDCDRLDMIERWALEKETEA 258

Query: 221 DEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAK 275
              +  +      +    +   +   L    GI L   S       K +L   +      
Sbjct: 259 LAQVRSITGHRIAVGDVWKPEVIAPAL-EHIGIKLNKTSQGKPNIDKELLGSIDHP--VA 315

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------YGASRTGRWSGCV 324
           DL+      +       +++ + +  +GRL GT                 +  GR S   
Sbjct: 316 DLLERARKVNKLRTTFASSVRDHMV-NGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEH 374

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              Q  P                             +   R+  +   G+     D +  
Sbjct: 375 PNLQQQP------------------------ARDEFAMMWRAIYLPEEGQHWASNDYSQQ 410

Query: 385 EARVLAWIAG-EDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           E R+    A      I   A        D Y        +  +  ++  +R   K + L 
Sbjct: 411 EPRMAVHYACLAKDLIGHQAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLG 470

Query: 439 LGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           L Y  G     + +     + ++     +   ++ E            +           
Sbjct: 471 LSYGMGGAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEA---------- 520

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
             G   + +   +  K   + +L K        V                          
Sbjct: 521 -AGPEGQALLDTFDHKVPFIKKLAKACEARAKAVGY------------------------ 555

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             I   S RR  +   K                  +  K    ++Q  S D     M   
Sbjct: 556 --ITTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVAC 600

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + G DI++ VHDEI     D           +M         LP K +    + +
Sbjct: 601 AEAGLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSW 652


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/617 (13%), Positives = 165/617 (26%), Gaps = 141/617 (22%)

Query: 82  KTLGIDIPSKRWICTSVLARTNGLP----SSLKNACLALNFSEHLTKMEEGKALIARFCK 137
           +  G  +  +      + A          ++       L           G A       
Sbjct: 433 RAQGWTL-GEECFDVMLAAYLVAPDQRSYAAADLVGRVLGL------DVGGGAPDDALFD 485

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
            + +        A   +             EA          LSD E     +   +   
Sbjct: 486 LAAEGEGPGVAGARLGRLCAALHPLRAELGEA-LRGSGEAGLLSDVEMPTAAVLAGMERV 544

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--- 254
           G  +D   +  L + +  + ++  E  + +    + +      L+  LF   G+      
Sbjct: 545 GIGVDSARLGALSDELGGDVERAREGALAVLGREV-NLSSPKQLQEVLFEHFGLPRTRRT 603

Query: 255 DMSEGTLKSILSHS---------NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                T    L            +  +    L+ +R          +++L  +V+ DGR+
Sbjct: 604 KTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLKQ--MVDSLIASVADDGRI 661

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T     A+ TGR +      QN+P                                +R
Sbjct: 662 HTTFSQ-VAAATGRLASADPNLQNIP------------------------ARSADGMRIR 696

Query: 366 SCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              +A  G + L+ AD + IE R++A ++ ++  I AF +GED++ T  +  F TP+ +V
Sbjct: 697 GGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPVAEV 756

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           + +QR+  K     L Y               L                           
Sbjct: 757 TAQQRSRIKATSYGLAYG-----LSKYGLSKQL--------------------------- 784

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                        +       +++ +  +  GV    + L +                  
Sbjct: 785 ------------GIPVPEAAALRERYFERFGGVRDYLESLVDQARSRGYTETMYH----- 827

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                RR    D+  D         +               +Q 
Sbjct: 828 ---------------------RRRYLPDLGSDNRQRREMAERA---------ALNAPIQG 857

Query: 605 ISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657
            + DI+   M        + G    +++ +HDE++ E        V       M    S 
Sbjct: 858 SAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEVAPGERERVEEAVRQEMAGVAS- 916

Query: 658 AKGLPLKAEGYEAKRYR 674
              +PL         ++
Sbjct: 917 -LRVPLDVSVGVGPSWQ 932


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/631 (14%), Positives = 179/631 (28%), Gaps = 138/631 (21%)

Query: 58  LQYLRD--ETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110
           L++L +    ++     + H+        K    + + + R   T +LA           
Sbjct: 381 LEFLENAFSQILQHACIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 440

Query: 111 N-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L       +       I  F   S          +  + A +   EY ++    
Sbjct: 441 EVLKEYLK------EDLIPHEKIKDFKTKSKAEKL--ELLSVELNALKRLCEYFEKGGLE 492

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                  L      E     +   +  +G++ID+    +L++    E K L+  I+ L  
Sbjct: 493 E----GLLALARGVETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIG 548

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               +      L   L+   G+   + S  T +  L        +  LIL     +    
Sbjct: 549 VDF-NLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFN 606

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L      D ++  T    G + TGR S      QN+P                  
Sbjct: 607 TYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP------------------ 647

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         +R   IAS     L+  D + IE R+LA  + +   ++AF  G DI
Sbjct: 648 ------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDI 701

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++ T    F    + ++KE+R+I K +                    G+           
Sbjct: 702 HLETSKALFG---EDLAKEKRSIAKSINF--------------GLVYGMGS--------- 735

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                 + +    +     +   +A+  +   +      + E  
Sbjct: 736 ---------------------KKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEI 774

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               +    +   RV +   +        +                              
Sbjct: 775 LKTSKAFTLLGRYRVFDFNGVNDYVKGNYLREG--------------------------- 807

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFS 643
                       I Q  + D+L  GM   ++         ++L VHDE++ E  +     
Sbjct: 808 ---------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPE 858

Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +  ++     +   +PL+   + AKR+
Sbjct: 859 LQQEIQRILNDEV-YPLRVPLETSAFIAKRW 888


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/655 (11%), Positives = 165/655 (25%), Gaps = 131/655 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
             +AW                     Q  +      +   + ++     +    LGI++ 
Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKP----I---ATYDFKRSKVLLSHLGIEL- 390

Query: 90  SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   +          + L                   +     + KG+  + P   
Sbjct: 391 VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPDKD 443

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+          K  +       ++L    + E  L  +   +   G +++   + 
Sbjct: 444 VLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQ 503

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLK 262
            + E      + L ++I  +      +      L   LF    +             T  
Sbjct: 504 DMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAV 562

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL+    +      +  L + + +DG++         ++TGR S 
Sbjct: 563 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R           L+ +D 
Sbjct: 622 VDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSSDY 657

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALG 440
           + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   + 
Sbjct: 658 SQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIV 717

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               L + +        + FE +   +++   +  +  +    + L  
Sbjct: 718 YG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFK 772

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVH 559
              EL           +     ++        +      SA  +  +  + + +  +   
Sbjct: 773 RRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                                                               + +     
Sbjct: 824 FR-------------------------------------------------AKMLLQVHD 834

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 835 E---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/647 (12%), Positives = 169/647 (26%), Gaps = 145/647 (22%)

Query: 65  TVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119
               V  N+  F R + +     G       ++     V A                  +
Sbjct: 312 KCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSD-----------T 360

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLI 178
               +    K L          +             +      Y     + T +L  +L 
Sbjct: 361 APSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLK 415

Query: 179 PL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   + +    +D + + +   L+    K+L+++      G  
Sbjct: 416 AYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGEQ 474

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILNR 281
                   LR  LF    + L+   +            T +++L+          LIL  
Sbjct: 475 FLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEY 534

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     ++ L   +   G +  T    G + TGR S      Q + +         
Sbjct: 535 RQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 592

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                     TI+          R+  ++S G   + AD + IE R+LA ++G+   +K 
Sbjct: 593 NFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 643

Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F   E    + T  ++  + PI++V+   R   K +  ++ Y  G +             
Sbjct: 644 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC-------- 695

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                                 +         + +  K++ +  
Sbjct: 696 ------------------------------------LGVTVLEATHFLERFLQKYKKIKD 719

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             + +             +                           RR     +      
Sbjct: 720 FAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ- 752

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEI 632
                +Q  R+          +VQ  + D+    M   +            +V  +HDE+
Sbjct: 753 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 804

Query: 633 VSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673
           + E  DT       L   +M      +       +PLK      + +
Sbjct: 805 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 851


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/647 (12%), Positives = 169/647 (26%), Gaps = 145/647 (22%)

Query: 65  TVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119
               V  N+  F R + +     G       ++     V A                  +
Sbjct: 314 KCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSD-----------T 362

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLI 178
               +    K L          +             +      Y     + T +L  +L 
Sbjct: 363 APSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLK 417

Query: 179 PL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   + +    +D + + +   L+    K+L+++      G  
Sbjct: 418 AYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGEQ 476

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILNR 281
                   LR  LF    + L+   +            T +++L+          LIL  
Sbjct: 477 FLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEY 536

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     ++ L   +   G +  T    G + TGR S      Q + +         
Sbjct: 537 RQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                     TI+          R+  ++S G   + AD + IE R+LA ++G+   +K 
Sbjct: 595 NFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 645

Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F   E    + T  ++  + PI++V+   R   K +  ++ Y  G +             
Sbjct: 646 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC-------- 697

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                                 +         + +  K++ +  
Sbjct: 698 ------------------------------------LGVTVLEATHFLERFLQKYKKIKD 721

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             + +             +                           RR     +      
Sbjct: 722 FAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ- 754

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEI 632
                +Q  R+          +VQ  + D+    M   +            +V  +HDE+
Sbjct: 755 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 806

Query: 633 VSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673
           + E  DT       L   +M      +       +PLK      + +
Sbjct: 807 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/632 (14%), Positives = 175/632 (27%), Gaps = 153/632 (24%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-CLA 115
           +L  L ++++  + ++      L K                ++  T       KN     
Sbjct: 377 ILNLLTNKSIKKITYSLK---HLLKFYANQSHKITAIEDLELMQYTLSAGLVQKNLFAET 433

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L  ++     E  K +I                +A        F  Y + D         
Sbjct: 434 L--TKDNIINESAKIVINFISLYKQTLLALQKNKA--------FRLYREID--------- 474

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                         +   +   G ++D + + +L +    E  K++E+I  L+     + 
Sbjct: 475 ---------LPTCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTKF-NI 524

Query: 236 RQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNIT-QLAKDLILNRLASSGSAI 289
                L   LF    +   +      S  T   IL   +        L+L     +    
Sbjct: 525 ASQKQLSEILFKKMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKN 584

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
              ++L + +++  +   T     ++ TGR S      QN+P                  
Sbjct: 585 TYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIP------------------ 626

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       + +R   IA +G KL+ AD + IE R+L+ IA  D   +AF N EDI+
Sbjct: 627 ------TRSSDGNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIH 680

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T  + FN    +++ E R   K +                    G+            
Sbjct: 681 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 715

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                  A +  +         K + A+++G+ +          
Sbjct: 716 -------------------AFGLAKQLNVSNGTAAEYIKQYFAEYKGMQEYMVQTKAYAN 756

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                         +     R+     +               R
Sbjct: 757 RNGY--------------------------VTNFFGRKCFIPLIHDKK-----LKQFAER 785

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  S DI+   M          K    ++L +HDE++ E P+     
Sbjct: 786 AAINAP------IQGTSADIIKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELEL 839

Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
           V   +  +M    S    +P+  E      ++
Sbjct: 840 VIPIIKKIME--YSTNIDVPIITEIRAGNNWK 869


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/664 (13%), Positives = 184/664 (27%), Gaps = 148/664 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 288 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLSFLK 344

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALN---FSEHLTKMEEGKALIARFC 136
               + + + R   T +LA                 L          K  + K+ + +  
Sbjct: 345 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKVEKLE 404

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           +               + A +   EY ++           L    + E     +   +  
Sbjct: 405 Q-----------LDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEF 449

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID     +L++    E   L+  I+ L      +      L   L+    +   + 
Sbjct: 450 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NK 507

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S  T +  L        +  LIL     +         L      D ++  T    G + 
Sbjct: 508 SRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 566

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   IAS     
Sbjct: 567 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 602

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +
Sbjct: 603 LLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 659

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+                                 + +  
Sbjct: 660 NF--------------GLVYGMGS------------------------------KKLSET 675

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +   +A+  +   +      + E      +    +   RV +      R   
Sbjct: 676 LNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDRIKG 735

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
             +                                          I Q  + D+L  GM 
Sbjct: 736 DYLREG------------------------------------VNAIFQGSASDLLKLGML 759

Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  +     +   +  ++     +   +PL+   + 
Sbjct: 760 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNNEV-YPLRVPLETSAFV 818

Query: 670 AKRY 673
           A R+
Sbjct: 819 ANRW 822


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/692 (13%), Positives = 189/692 (27%), Gaps = 147/692 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLF 75
            K  + A  E  V+         E     + T     + S   +++ D  +  +  +   
Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSL-----KNACL-ALNFSEHLT-K 124
           +R    +  G  +        S+ +   G        L     ++     L   +    +
Sbjct: 430 QRK-LLREYGYKLDG-AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSE 487

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
           +   +   + F     ++  Y    +  +        +         +   +L    D E
Sbjct: 488 LVFPEEAPSLFEMPGEENLRYFTQVSRVIHELARILHF-------EMQEQGQLKIYEDIE 540

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSSRQTYA 240
             L  +   +   G  +   L+ +L +  +      +E          +G   +      
Sbjct: 541 LPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQ 600

Query: 241 LRMYLFLITGIDLV-------DMSEGTLKSILS----HSNITQLAKDLILNRLASSGSAI 289
           L+  LF   G+               ++  +L+     S+  Q    L   R        
Sbjct: 601 LQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQT 660

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L +A  +DGR+  T Q   AS TGR S      QN+P                  
Sbjct: 661 --VEGLQKAAVADGRVHTTFQQNAAS-TGRLSSTAPNLQNIP------------------ 699

Query: 350 GETIADPLGLASDCVRSCIIASNG-------KKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                         +R   I +         + L+ AD + IE R++  +A ++  I+A+
Sbjct: 700 ------IRTDEGRRIRGAFIVAPKILDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAY 753

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           A+GED++    ++ F    ++V+ + RA  K M   L Y               L++   
Sbjct: 754 ADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRFGLAKQLNISSD 808

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                 T+ F+ + +       +  Q       + + G          R     +    +
Sbjct: 809 EAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------RRSLPDLDSPNR 859

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
              E                                        ++   ++       N 
Sbjct: 860 TRREAAERAALNAPIQGTAADII---------------------KIAMINIHRRLQEEN- 897

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                      L   M           L VHDEI+ E       
Sbjct: 898 ---------------------------LKTRML----------LQVHDEIILEVAAGERE 920

Query: 643 SVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   +    M++       +PL  +    K +
Sbjct: 921 AAQRILVEEMSEAIE--LKVPLDVQVGWGKSW 950


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/688 (14%), Positives = 200/688 (29%), Gaps = 156/688 (22%)

Query: 31   TLCAYAWDDEPVKLWDRTEQS------AMPSDLLQYLRDETVMCVAHNSLFERILFK--K 82
             L   + ++  +   D            +   L  +++      V H+      L K  K
Sbjct: 454  VLVMLSQNNAAIVYSDVLNGDSSEDCNKICHKLKDFIKMYESSIVLHDYKKHIALLKSLK 513

Query: 83   TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKG 138
             +  +      + T + +          ++++     LN      K  E  A        
Sbjct: 514  IVDNNYSFNPLLDTRLASYLIEPDFRNENIEDMAEHVLNIHVENEKSNEEPAQGELDFVL 573

Query: 139  SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187
                 P +  +    +  Q   E    +   T  L  +              + D E  +
Sbjct: 574  EDSDNPEELNQEEDKRKKQ---EKRILETAITIRLLAKQYAIKLDERKQTGLMVDVEMPV 630

Query: 188  WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
              + + + D G  +D+  ++ +++  A E +   +  + + +  I + +    L+  LF 
Sbjct: 631  SRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVANKPI-NLQSPKQLQQLLFE 689

Query: 248  ITGIDLVDMSEG----TLKSILSHS--------NITQLAKDLILNRLASSGSAILKLNTL 295
              G+     ++     T    L             +Q    L+ +R  +    I  + +L
Sbjct: 690  DMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLKQI--VQSL 747

Query: 296  SE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + A   DGR+  T +   A  TGR S      QN+P                       
Sbjct: 748  IDSARYEDGRIHTTFEQTIA-ATGRLSSSDPNLQNIP----------------------- 783

Query: 355  DPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                +    +R+  I  N   +L+  D + +E R++A  + ++  IKAF +G D +    
Sbjct: 784  -NRNVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVA 842

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            +  +  P+++VS +QR+  K M   L Y        T      L +   +          
Sbjct: 843  SLVYKIPVEQVSPDQRSHVKAMSYGLAYG-----LSTYGLAKQLSISPAA---------- 887

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                          E++K+ +     GV    + L +    +  
Sbjct: 888  -----------------------------AEVLKEKYFDTFGGVHDYLESLVDKARKLGY 918

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                                            RR  +  +         +  +       
Sbjct: 919  TQTMF--------------------------GRRRYFPKLNSTNRASRESAERA------ 946

Query: 594  GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647
                    +Q  + DI+   M    K+         ++L +HDE+V E        V  +
Sbjct: 947  ---ALNAPIQGSAADIMKLAMIQVDKDLREAKVKSRVILQIHDELVLEIAHGEADIVENI 1003

Query: 648  CS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
                M         +PL         ++
Sbjct: 1004 VKNAMEHTVE--LDVPLNVSTGLGADWQ 1029


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 396 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 440

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 441 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 500

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 501 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 559

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 560 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 619

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 620 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 654

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 655 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 714

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 715 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 769

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 770 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 816

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 817 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 836

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 837 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 879

Query: 668 YEAKRY 673
            E   +
Sbjct: 880 NEGATW 885


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/661 (14%), Positives = 183/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   Q L+   +  + H+        K
Sbjct: 352 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLSFLK 408

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L       +       I  F   S
Sbjct: 409 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EEWIPHEKIKDFKTKS 462

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                    R  H  A +   EY ++           L    + E     +   +  +G+
Sbjct: 463 KAEKLEQLDRELH--ALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 516

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I++L      +      L   L+    +   + S  
Sbjct: 517 KIDAPYFKRLEQEFKNELHVLERQILELIGADF-NLNSPKQLSEILYEKLELPQ-NKSRS 574

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 575 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 633

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 634 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 669

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 670 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 725

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 726 -------------GLVYGMGS------------------------------KKLSETLNI 742

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 743 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYL 802

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 803 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 826

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 827 ERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFIAKR 885

Query: 673 Y 673
           +
Sbjct: 886 W 886


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 377 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 421

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 422 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 481

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 482 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 540

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 541 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 600

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 601 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 635

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 636 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 695

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 696 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 750

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 751 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 797

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 798 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 817

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 818 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 860

Query: 668 YEAKRY 673
            E   +
Sbjct: 861 NEGATW 866


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/728 (13%), Positives = 191/728 (26%), Gaps = 163/728 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------QSA 52
           +D+ET         G+  Y +   +        D P                     +  
Sbjct: 88  LDVETT--------GLDIYNDI--LVGICLYNPDLPSAYVPFNHTDLQNRRVEGQMTEEE 137

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110
             + +L YL ++ + C+ HN  F+  +     G  I +  W  T++ +          LK
Sbjct: 138 CKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIANV-WWDTNIASWVLNENEKHGLK 196

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK-RDVEA 169
                   +   +  + G       C              +  + W L+    +  + EA
Sbjct: 197 PLYNKYILNGEGSDEDFGDLFEGIPCNYIPIEIFSIYGANDGFKTWALYQFQKQYLNPEA 256

Query: 170 TRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            R  +++L     + E  L  +   +  RG  I  D   +L     +E ++ +       
Sbjct: 257 KRADYRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNEEMQEKEALCDAYV 316

Query: 229 DG------------------IIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHS 268
                                  +      +   L+ I  +  V   E  GT   I+   
Sbjct: 317 REFEEYIKENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRKEPRGTGDKIIQMH 376

Query: 269 NITQLAK------------DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGAS 315
                              D               ++ +          +  T   YGA 
Sbjct: 377 RNKAKKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKTNAVHTTFNQYGAV 436

Query: 316 RTGRWSG---CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
                S         QN+P  E+S                           +R    A +
Sbjct: 437 TGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKIFKARD 469

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G KLV  D + IE RVLA+ +G++    A+  G+D+Y    +K +  P +   +E    G
Sbjct: 470 GYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYEDC-REFYPDG 528

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            V                                          ++    +  +      
Sbjct: 529 TVNPEG-------------------------------KHRRTTMKSVLLGIMYERGAQAI 557

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
             +        + +   +      V QL   + +                          
Sbjct: 558 GEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEEYGYVTTIK-------------- 603

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R+    D++              +          +++Q  S DI+  
Sbjct: 604 ------------GRKRRLPDMQLSNHDDYRYAEAHRQS-------LNSVIQGSSADIMKL 644

Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665
            M    +          +++TVHDE++ E P+         L S M +       LP+  
Sbjct: 645 AMIEIYRDPRYKELDCHMIITVHDELIMEVPEANVKVGAELLVSTMKRVGHSLIDLPMSV 704

Query: 666 EGYEAKRY 673
           +    + +
Sbjct: 705 DAEVNEYW 712


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/661 (13%), Positives = 182/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+  +D+        E          + +   Q L+   +  + H+        K
Sbjct: 354 KVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L       +       I  F   +
Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EEWIPHEKIKDF--KT 462

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                        + A +   EY ++           L    + E     +   +  +G+
Sbjct: 463 KSKAGKLEQLDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFVKVLMGMEFQGF 518

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I++L      +      L   L+    +   + S  
Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELP-KNKSHS 576

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 577 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 635

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 636 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 671

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 672 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 727

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 728 -------------GLVYGMGS------------------------------KKLSETLNI 744

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +   +        +
Sbjct: 745 PLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDYIKGNYL 804

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 805 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 828

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 829 ERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFIAKR 887

Query: 673 Y 673
           +
Sbjct: 888 W 888


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 396 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 440

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 441 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 500

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 501 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 559

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 560 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 619

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 620 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 654

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 655 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 714

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 715 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 769

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 770 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 816

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 817 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 836

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 837 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 879

Query: 668 YEAKRY 673
            E   +
Sbjct: 880 NEGATW 885


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 377 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 421

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 422 GKGVKKAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKME 481

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 482 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 540

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 541 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 600

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 601 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 635

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 636 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 695

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 696 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 750

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 751 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 797

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 798 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 817

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 818 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 860

Query: 668 YEAKRY 673
            E   +
Sbjct: 861 NEGATW 866


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/702 (15%), Positives = 192/702 (27%), Gaps = 183/702 (26%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIE     PL           A + L   A       + D  E   + S L + L    
Sbjct: 32  LDIEATGLSPL----------DARMRLLQLA-AGGETFVVDVFEVKDL-SPLREALE-GG 78

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKNACLALNFSE 120
            + V HN+ ++        GI +       T + A+           SL+          
Sbjct: 79  PLKVLHNAKYDYSFLLAQHGIRLSP--LFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQET 136

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                            +  +   EY  RD      L +RL  L
Sbjct: 137 ---------------------VDKTARREDWSKELSREQLEYAARDAAILLPLHERLQEL 175

Query: 181 SDGE---------RDLWLLDQTINDRGYRIDLDLVLKLQEL-----------IAQERKKL 220
            + E                  +   G R+D+    +L+ +           +     + 
Sbjct: 176 LEREGLGPVSRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQP 235

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
           +  +     G   +      +    F   GI+L D    TL        +   A   +L 
Sbjct: 236 EGVLPLEGLGPRLNLNSPQQIME-AFRSIGIELPDTRMWTL------LTVDHPAARDLLE 288

Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                      L T    V    GR+  +        TGR +      Q +P ++     
Sbjct: 289 YRELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP-TGRLACTNPNVQQIPHED----- 342

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                    R C +A  G  LV+AD + IE R+LA ++G+   +
Sbjct: 343 -----------------------EFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFV 379

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF  GED++  T A  F  P ++V+KEQR+  K +   L                    
Sbjct: 380 EAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGL-------------------- 419

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A +          +   + A +  V +
Sbjct: 420 ------------------------AYGRGPRSLAAQLGTDEERARRLIDEYFATYGRVQR 455

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
               L E     ++EG                            S R   +   +G  S 
Sbjct: 456 Y---LNETANRALKEGAL-----------------------RTLSGRLRKFGRTRGLSSA 489

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVS- 634
              A  +         +     +Q  S DI    +             ++  +HDE V  
Sbjct: 490 ERGALKR---------EAMNYPIQGTSADIAKLALIFIHSELRDLDARLINCIHDEFVVE 540

Query: 635 ETPDTPYFSVGTLCSLMTKNPS-WAKGLPLKAEGYEAKRYRK 675
              +    +   + S M +      K +P++ E   ++ +RK
Sbjct: 541 CAEEQAEEAASRVRSAMVRAGERLLKRVPVEVEVAVSREWRK 582


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 32  LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 81

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 82  GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 126

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 127 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 186

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 187 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 245

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 246 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 305

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 306 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 340

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 341 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 400

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 401 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 455

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 456 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 502

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 503 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 522

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 523 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 565

Query: 668 YEAKRY 673
            E   +
Sbjct: 566 NEGATW 571


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/733 (13%), Positives = 189/733 (25%), Gaps = 165/733 (22%)

Query: 9   ETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
           ET           +   G+  Y +   +        D P                     
Sbjct: 76  ETYLTGVSEYVLDVETTGLDVYNDI--LVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
           +    + +L YL + ++ C+ HN  F+  +     G  I +  W  T++           
Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANV-WWDTNIAGWVLNENEKH 192

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF---GEYCK 164
            LK        +   +  + G       C              +  + W L+    +Y +
Sbjct: 193 GLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLR 252

Query: 165 RDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            D    R  +++L  +  D E  L  +   +  RG  I  D   +L      E  + ++ 
Sbjct: 253 EDH--PRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKL 310

Query: 224 IVKL------------------TDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKS 263
             +                         +      +    + I  +  V   E  GT   
Sbjct: 311 CDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDK 370

Query: 264 ILSHSNITQLAK------------DLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQ 310
           I+                      D               ++ + E   +    +  T  
Sbjct: 371 IVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAKTNAVHTTYN 430

Query: 311 FYGASRTGRWSG---CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            YGA      S         QN+P  E+S                           +R  
Sbjct: 431 QYGAKTGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKI 463

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
             A +G K V  D + IE RVL++++G++   +A+  G+D+Y    +K +  P +   +E
Sbjct: 464 FRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDC-RE 522

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
               G V                                          ++    +  + 
Sbjct: 523 FYPDGTVNAEG-------------------------------KHRRTTMKSVLLGIMYER 551

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                  +        + +   +      + QL   + +              +      
Sbjct: 552 GAKAIGEQFDRSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRK------ 605

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RRL    +     Y      +              ++Q  S 
Sbjct: 606 ------------------RRLPEMQLPDHDDYRYQEAHRQS---------LNAVIQGSSA 638

Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG 660
           DI+   M               +V+TVHDE++ E P+         L + M +       
Sbjct: 639 DIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLID 698

Query: 661 LPLKAEGYEAKRY 673
           LP+  +      +
Sbjct: 699 LPMSVDAEVNDYW 711


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/643 (13%), Positives = 172/643 (26%), Gaps = 129/643 (20%)

Query: 44  LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +D T+           ++ D +   V HN+     +F +  G +I       T++ A  
Sbjct: 378 WFDTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEH-GWEIAGVTM-DTALAAYL 435

Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L       L+              +A       ++          +   + 
Sbjct: 436 VKPGRRSFALDALSIEYLHRELAPA---AADGQLAFGTDEQAEADALMSQARAVLDLGEA 492

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            G   +               L D E    LL   +   G   D   +  +++  A   +
Sbjct: 493 LGGKLEEVGAVEL--------LHDVELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQ 544

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN------ITQ 272
           +  ++          +      L+   F    +     ++    +              +
Sbjct: 545 QAVKEAHAAVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHE 603

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           L   ++ +R  +   +   +  L + +++DGR+  T     A  TGR S      QN+P 
Sbjct: 604 LPVIMLRHREQARLRST--VEGLIKTIAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP- 659

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAW 391
                                          +R   +   G + L+ AD + IE RV+A 
Sbjct: 660 -----------------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 696

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   I+AF +GED++ T  ++ F+     V  E R   K M   L Y          
Sbjct: 697 LSEDLGLIEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYG-----LSAF 751

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L ++     V   + FE +     +   + D+         ++G          R
Sbjct: 752 GLSQQLGIEPAEARVLMDTYFERFGGVRDYLRRVVDEARATGYTATMLGR---------R 802

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                +    +   E    +            A++ ++ M    R +     SSR L   
Sbjct: 803 RYLPDLNSDNRQRRESAERMALNAPIQGTA--ADIVKVAMLNVDRALTDAKLSSRLL--- 857

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                                                                       
Sbjct: 858 -------------------------------------------LQVHDE----------- 863

Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           IV E        V TL    M+   S     PL         +
Sbjct: 864 IVLEVAPGEREQVETLVRHEMSSAVSLRA--PLDVSVGAGPDW 904


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/665 (14%), Positives = 189/665 (28%), Gaps = 151/665 (22%)

Query: 31  TLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
               YA +      +    +        +L   L    V  + H +   R  F +  G +
Sbjct: 355 LAIYYATE-GTGHCYALEPRFLSDTEQKELEDLLTSHAV--ITHEAKRLRHAF-RECGFE 410

Query: 88  IPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           I  +      + A   G      SL                    +L+  F     +   
Sbjct: 411 I-GELAEDVELEAYLLGPDQREYSLPTLSEKYLQRSLPVAESAQLSLLRDF----SELAG 465

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                 +  +       + + +     EL++ L      E  +      +   G  + +D
Sbjct: 466 QAQVVYDLHE-----VLFKQLETTQLAELYRGL------ELPVQADLYELEKHGVAMSMD 514

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------ 258
           ++ +L E + ++  ++ E+      G   +      L+  LF    +     ++      
Sbjct: 515 VLNQLLEELTEQV-EVAEEAAYNAIGHKVNLASPMQLQTVLFEELQMPKTKKTKRGYTTN 573

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
              L  +   +    L   L+ +R       I  +  L  AV +DGR+  T Q   A  T
Sbjct: 574 AEALVELYEKTQHPFLQH-LLAHRDKIKMRQI--VEGLISAVGADGRIHTTFQQTVA-AT 629

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376
           GR S      QN+P                                +R   +   G   L
Sbjct: 630 GRLSSTEPNLQNIP------------------------ARTAEGMRIRGAFVPGTGFDYL 665

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           + AD + IE R++A ++ ++  I+AF +GED++ T  A  F  P+++V+   R+  K   
Sbjct: 666 LTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRTMAAMVFAVPVEEVTPALRSQIKATS 725

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             L Y        +      L                                       
Sbjct: 726 YGLAYG-----LSSYGLSQQL--------------------------------------- 741

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +       +K+ +  +  GV +   ++ E                              
Sbjct: 742 GISVPEARKLKEKYFERFGGVGRFLGEVVEEARERG------------------------ 777

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RR    D+    + L     +               +Q  + DI+   M  
Sbjct: 778 --FTATMMGRRRYLPDLNSGNTNLRAMAERA---------ALNAPIQGTAADIIKLAMHL 826

Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
             +          ++L VHDE+V E   +    V  +   +M+        LPL      
Sbjct: 827 VMRVLRERGLASRVLLQVHDELVLEVVASELNEVIQIVTDVMSGAAE--LSLPLDVSFGV 884

Query: 670 AKRYR 674
              ++
Sbjct: 885 GASWQ 889


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/655 (11%), Positives = 165/655 (25%), Gaps = 131/655 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
             +AW                     Q  +      +   + ++     +    LGI++ 
Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKP----I---ATYDFKRSKVLLSHLGIEL- 390

Query: 90  SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   +          + L                   +     + KG+  + P   
Sbjct: 391 VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPDKD 443

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
               H+          K  +       ++L    + E  L  +   +   G +++   + 
Sbjct: 444 VLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQ 503

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLK 262
            + E      + L ++I  +      +      L   LF    +             T  
Sbjct: 504 DMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAV 562

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
           ++L            IL+    +      +  L + + +DG++         ++TGR S 
Sbjct: 563 NVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R           L+ +D 
Sbjct: 622 VDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSSDY 657

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALG 440
           + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   + 
Sbjct: 658 SQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIV 717

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               L + +        + FE +   +++   +  +  +    + L  
Sbjct: 718 YG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFK 772

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVH 559
              EL           +     ++        +      SA  +  +  + + +  +   
Sbjct: 773 RRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                                                               + +     
Sbjct: 824 FR-------------------------------------------------AKMLLQVHD 834

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               IVL        E P+    ++  L    M      A  +PL  +      +
Sbjct: 835 E---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGHSW 876


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/709 (15%), Positives = 191/709 (26%), Gaps = 187/709 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             LFID E        K           I L     +   + ++D          L + L
Sbjct: 23  KYLFIDTE-----VAVKSFEDIDFFNDKIRLIQIG-NYSKIFVYDMFRIPQFSEHLKELL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLALN 117
            ++ V  + HN  F+    K   GI    +    T + ++          SL      L 
Sbjct: 77  ENKGV--IGHNLKFDIKFLKTNFGIF--PQIVFDTMIASQLLSEDSREKHSLSALSYRL- 131

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                              K    SP             +    Y  +DV+  RE+F  L
Sbjct: 132 -------------TDNHLDKSQQRSPWGIKNLT------EEQLRYAAKDVQVLREIFPVL 172

Query: 178 IPLSDG------------------------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
               +                         E         I  RG  +D  L+  + + +
Sbjct: 173 RDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQKV 232

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL---KSILSHSNI 270
           + + ++   + +               +  +L    G+ L    +G+L    S L     
Sbjct: 233 STDYQR---EYIDFVRRYGVDPFSPQKVTNWLTSKLGLKLPTTQKGSLSSQDSALRRYID 289

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
            +  + L+  R         KL  L   +  +GR+    +  GA  TGR +      QN+
Sbjct: 290 REEVRKLLHIRSEKKIL--DKLKELKAHL-INGRIYTQFKQIGAP-TGRMASMRPNLQNI 345

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            R                               +R       GKKL+VAD + IE R+ A
Sbjct: 346 TRD------------------------------LRVLFRPPEGKKLIVADYSQIELRIAA 375

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
               ++  IKAF+ G+D++  T +       D+++K++R + K +   L Y    +    
Sbjct: 376 EYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSLME 435

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
            A                                        +    +     ++    +
Sbjct: 436 YAR--------------------------------------NSYGVDISLKDAQIFHSRF 457

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
              ++G       + E      +        R   V R                      
Sbjct: 458 FEVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVVRRFTE------------------- 498

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---NA-TKNGYDIVL 626
                                          VQ    D+L   +             IV 
Sbjct: 499 --------------------------AVNFPVQGTGSDLLKMAVVFFGKLKEDRDAGIVN 532

Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPS-WAKGLPLKAEGYEAKRY 673
            VHDEI+ E  ++    +  +    M +      K +P++ E    + +
Sbjct: 533 LVHDEIIVECSESIADEIRDILSESMLRAGKILLKKVPVEFEVEIVESW 581


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/733 (13%), Positives = 189/733 (25%), Gaps = 165/733 (22%)

Query: 9   ETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49
           ET           +   G+  Y +   +        D P                     
Sbjct: 76  ETYLTGVSEYVLDVETTGLDVYNDI--LVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107
           +    + +L YL + ++ C+ HN  F+  +     G  I +  W  T++           
Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANV-WWDTNIAGWVLNENEKH 192

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF---GEYCK 164
            LK        +   +  + G       C              +  + W L+    +Y +
Sbjct: 193 RLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLR 252

Query: 165 RDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            D    R  +++L  +  D E  L  +   +  RG  I  D   +L      E  + ++ 
Sbjct: 253 EDH--PRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKL 310

Query: 224 IVKL------------------TDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKS 263
             +                         +      +    + I  +  V   E  GT   
Sbjct: 311 CDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDK 370

Query: 264 ILSHSNITQLAK------------DLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQ 310
           I+                      D               ++ + E   +    +  T  
Sbjct: 371 IVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAKTNAVHTTYN 430

Query: 311 FYGASRTGRWSG---CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            YGA      S         QN+P  E+S                           +R  
Sbjct: 431 QYGAKTGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKI 463

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
             A +G K V  D + IE RVL++++G++   +A+  G+D+Y    +K +  P +   +E
Sbjct: 464 FRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDC-RE 522

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
               G V                                          ++    +  + 
Sbjct: 523 FYPDGTVNAEG-------------------------------KHRRTTMKSVLLGIMYER 551

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                  +        + +   +      + QL   + +              +      
Sbjct: 552 GAKAIGEQFDKSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRK------ 605

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RRL    +     Y      +              ++Q  S 
Sbjct: 606 ------------------RRLPEMQLPDHDDYRYQEAHRQS---------LNAVIQGSSA 638

Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG 660
           DI+   M               +V+TVHDE++ E P+         L + M +       
Sbjct: 639 DIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLID 698

Query: 661 LPLKAEGYEAKRY 673
           LP+  +      +
Sbjct: 699 LPMSVDAEVNDYW 711


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 377 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 421

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 422 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKME 481

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 482 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 540

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 541 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 600

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 601 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 635

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 636 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 695

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 696 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 750

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 751 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 797

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 798 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 817

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 818 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 860

Query: 668 YEAKRY 673
            E   +
Sbjct: 861 NEGATW 866


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/655 (11%), Positives = 170/655 (25%), Gaps = 131/655 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89
             +AW                     Q  +      +   + ++     +    LGI++ 
Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKP----I---ATYDFKRSKVLLSHLGIEL- 390

Query: 90  SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   +          + L         ++   + ++    I          P  D 
Sbjct: 391 VAPSYDARLANYLLSTVEDNELSTIARIF--TDISLEEDD----IVYGKGAKRAVPDKDV 444

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
              +  +  ++  +   + ++      ++L    + E  L  +   +   G +++   + 
Sbjct: 445 LLEHLARKVKVLLDSKSQMLD-KLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQ 503

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLK 262
            + E      + L ++I  +      +      L   LF    +             T  
Sbjct: 504 DMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAV 562

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +L            IL+    +      +  L + + +DG++         ++TGR S 
Sbjct: 563 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSS 621

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381
                QN+P                                +R           L+ +D 
Sbjct: 622 VDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSSDY 657

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALG 440
           + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   + 
Sbjct: 658 SQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIV 717

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y               L + +        + FE +   +++   +  +  +    + L  
Sbjct: 718 YG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFK 772

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVH 559
              EL           +     ++        +      SA  +  +  + + +  +   
Sbjct: 773 RRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                                                               + +     
Sbjct: 824 FR-------------------------------------------------AKMLLQVHD 834

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
               IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 835 E---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/601 (13%), Positives = 163/601 (27%), Gaps = 145/601 (24%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           T  +     +   L D+++  + ++      L K                ++        
Sbjct: 368 TNNNWFSDIIFNLLVDKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGL 424

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S                          F +   ++   +    +          Y  +  
Sbjct: 425 S----------------------QKNLFEEALKETLIENIIIESAKIVINFISLY--KQT 460

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
               +  K     SD +  +  +   +   G ++D + + +L      E  KL+E+I  L
Sbjct: 461 ILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIFAL 520

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281
           +     +      L   LF    +          S  T   IL   +       +L+L  
Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLLRW 579

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
              +       ++L + + +  +   T     ++ TGR S      QN+P          
Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQNVP---------- 629

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                               + +R   IA  G KL+ AD + IE R+L+ IA  D   +A
Sbjct: 630 --------------IRSSEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQA 675

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F N +DI+  T  + FN    +++ E R   K +                    G+    
Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                          A +  +         K + A+++GV +  
Sbjct: 719 ---------------------------AFGLAKQLNVTNGKASEYIKKYFAEYKGVQEYM 751

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +                                  + ++     R+     +        
Sbjct: 752 EQTKAFA--------------------------SSNGYVTNFFGRKCFVPLIHDKK---- 781

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635
                  R            +Q  + DI+   M N        K    +VL +HDE++ E
Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834

Query: 636 T 636
            
Sbjct: 835 A 835


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/615 (13%), Positives = 168/615 (27%), Gaps = 132/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L         
Sbjct: 397 IIGHDLKPLLSFLKANYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP--- 453

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +          +  + A +   EY ++           L    + E 
Sbjct: 454 ---HEKIKDF--KTKSKAEKSEQLSLELNALKRLCEYFEKGGLEE----GLLALAREVET 504

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID     +L++    E   L+  I++L      +      L   L
Sbjct: 505 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEIL 563

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +    +   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 564 YEKLELP-KNKSRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 622

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 623 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 657

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   + AF  G DI++ T    F    + +
Sbjct: 658 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDL 714

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 715 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 735

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +     +   +A+  +   +      + E      +    +   RV 
Sbjct: 736 -----KKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 790

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +            +                                          I Q 
Sbjct: 791 DFTGANDYIKGNYLREG------------------------------------VNAIFQG 814

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 815 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YP 873

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + AKR+
Sbjct: 874 LRVPLETSAFIAKRW 888


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/635 (14%), Positives = 169/635 (26%), Gaps = 126/635 (19%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107
             A      Q+L       + HN+     +F +  G  +       T++ A         
Sbjct: 373 DEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYLVKPGRRS 430

Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +L       L               +        ++          +     FGE  ++
Sbjct: 431 FALDALSLEYLGRELAPA---TADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ 487

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            V AT  L        D E    +L  ++   G   D D +  ++   A   ++  ++  
Sbjct: 488 -VGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAH 539

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILN 280
                   +      L+  LF    +     ++    +                  ++L 
Sbjct: 540 DAVGREF-NLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLR 598

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               +   +  +  L +++++DGR+  T     A  TGR S      QN+P         
Sbjct: 599 HREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP--------- 647

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+ AD + IE RV+A ++ ++  I
Sbjct: 648 ---------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLI 692

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF +GED++ T  ++ F    D V  E R   K M   L Y               L++
Sbjct: 693 EAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNI 747

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                     + FE +     +     D+       + ++G          R     +  
Sbjct: 748 DAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGR---------RRYLPDLNS 798

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   E    +            A++ ++ M R  R +     SSR L           
Sbjct: 799 DNRQRRETAERMALNAPIQGTA--ADIVKIAMLRVHRALTEARLSSRML----------- 845

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                                               IV E    
Sbjct: 846 -----------------------------------LQVHDE-----------IVLEIAPG 859

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M          PL       + +
Sbjct: 860 ERERVEEIVRREMADAVQLRA--PLDVSVGVGQNW 892


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/581 (14%), Positives = 149/581 (25%), Gaps = 135/581 (23%)

Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           L       L   E           +A       +           +   + F    +   
Sbjct: 11  LDALSVEYLG-RELSPAAAADSGQLAFGADEQAEQDALMIKARTVLDLGEAFRGRLEEVG 69

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            A          LSD E     L   +   G   D D + ++++  A   ++  ++    
Sbjct: 70  AAGL--------LSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAA 121

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILN 280
                 +      L+  LF   G+                L  +   ++       L  +
Sbjct: 122 VGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIML-RH 179

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
           R  +   +   +  L + +S  GR+  T     A  TGR S      QN+P         
Sbjct: 180 REQARLRST--VEGLIKTISPGGRIHTTFNQTVA-ATGRLSSTDPNLQNIP--------- 227

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+ AD + IE RV+A ++ +D  I
Sbjct: 228 ---------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLI 272

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF +GED++ T  ++ F     +V  E R   K M              +     GL  
Sbjct: 273 EAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAM--------------SYGLAYGLSA 318

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
              S                                  +       +   +  +  GV  
Sbjct: 319 FGLSGQ------------------------------LGIGADEARRLMDTFFERFGGVRD 348

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             + + E    +      +                           RR    D+  D   
Sbjct: 349 YLQRVVEEARAIGYTETML--------------------------GRRRYLPDLTSDNRQ 382

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633
                 ++              +Q  + DI+   M               ++L VHDEIV
Sbjct: 383 RREMAERM---------ALNAPIQGTAADIVKIAMLKVDAALTAGELSSRMLLQVHDEIV 433

Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            E        V  L    M          PL         +
Sbjct: 434 LEIAPGERERVEELVRREMAGAFQLRA--PLDVSVGVGADW 472


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/635 (14%), Positives = 169/635 (26%), Gaps = 126/635 (19%)

Query: 50  QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107
             A      Q+L       + HN+     +F +  G  +       T++ A         
Sbjct: 384 DEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYLVKPGRRS 441

Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +L       L               +        ++          +     FGE  ++
Sbjct: 442 FALDALSLEYLGRELAPA---TADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ 498

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            V AT  L        D E    +L  ++   G   D D +  ++   A   ++  ++  
Sbjct: 499 -VGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAH 550

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILN 280
                   +      L+  LF    +     ++    +                  ++L 
Sbjct: 551 DAVGREF-NLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLR 609

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               +   +  +  L +++++DGR+  T     A  TGR S      QN+P         
Sbjct: 610 HREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP--------- 658

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +   G + L+ AD + IE RV+A ++ ++  I
Sbjct: 659 ---------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLI 703

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF +GED++ T  ++ F    D V  E R   K M   L Y               L++
Sbjct: 704 EAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNI 758

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                     + FE +     +     D+       + ++G          R     +  
Sbjct: 759 DAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGR---------RRYLPDLNS 809

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             +   E    +            A++ ++ M R  R +     SSR L           
Sbjct: 810 DNRQRRETAERMALNAPIQGTA--ADIVKIAMLRVHRALTEARLSSRML----------- 856

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                                                               IV E    
Sbjct: 857 -----------------------------------LQVHDE-----------IVLEIAPG 870

Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M          PL       + +
Sbjct: 871 ERERVEEIVRREMADAVQLRA--PLDVSVGVGQNW 903


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/661 (13%), Positives = 183/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 346 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 402

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L       +       I  F   +
Sbjct: 403 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EEWIPHEKIKDF--KT 454

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                        + A +   EY ++           L    + E     +   +  +G+
Sbjct: 455 KSKAGKLEQLDRELNALRRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 510

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I++L      +      L   L+    +   + S  
Sbjct: 511 KIDAPYFKRLEQEFKNELHVLERQILELIGADF-NLNSPKQLSEILYEKLELP-KNKSHS 568

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 569 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 627

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 628 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 663

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 664 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 719

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 720 -------------GLVYGMGS------------------------------KKLSETLNI 736

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
             +  +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 737 PLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYL 796

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 797 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 820

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 821 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFIAKR 879

Query: 673 Y 673
           +
Sbjct: 880 W 880


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLSQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYL 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/681 (11%), Positives = 172/681 (25%), Gaps = 140/681 (20%)

Query: 11  RSPQPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDETVMC 68
            S + +              I   A+                 + +   L  L  ++   
Sbjct: 318 FSAEDIFYFETLRDNYHCEAIIGFAW------------GHGEQIYASTDLSLLATDSFKQ 365

Query: 69  VAHN--SLFERI---LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEH 121
           V     + ++     +    LGI++         +          + L            
Sbjct: 366 VFQKPIATYDFKRSKVLLSHLGIEL-VAPSYDARLANYLLSTVEDNELSTIARI------ 418

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  +     + KG+  + P       H+          K  +       ++L    
Sbjct: 419 -FTDISLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQ 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G +++   +  + E      + L ++I  +      +      L
Sbjct: 478 NIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQL 536

Query: 242 RMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
              LF    +             T   +L            IL+    +      +  L 
Sbjct: 537 GSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQ 596

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           + + +DG++         ++TGR S      QN+P                         
Sbjct: 597 DYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------I 631

Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +R           L+ +D + IE RVLA I+G++  I AF  G DI+ +T  +
Sbjct: 632 RLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMR 691

Query: 416 AFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            F       V+   R   K +   + Y               L + +        + FE 
Sbjct: 692 VFGIDKAADVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKSYIDTYFER 746

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQ 533
           +   +++   +  +  +    + L     EL           +     ++        + 
Sbjct: 747 YPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFAERTAIN 797

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                SA  +  +  + + +  +                                     
Sbjct: 798 SPIQGSAADILKIAMINLDKALQAGGFR-------------------------------- 825

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
                             + +         IVL        E P+    ++  L    M 
Sbjct: 826 -----------------AKMLLQVHDE---IVL--------EVPNDELTAIKKLVKDTME 857

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
                A  +PL  +    + +
Sbjct: 858 AAVDLA--VPLCVDESTGQSW 876


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEIKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKAIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILTDGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/663 (14%), Positives = 185/663 (27%), Gaps = 146/663 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE------TVMCVAHNSLFERILFKK 82
            +   A+ ++D+        E    P  L ++L++        V  + H+        K 
Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSL-EFLQNAFFKMLQHVQIIGHDLKPLLSFLKA 411

Query: 83  TLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALN---FSEHLTKMEEGKALIARFCK 137
              + + + R   T +LA                 L          K  + K  + +  +
Sbjct: 412 KYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIPHETIKDFKTKNKVEKLEQ 471

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
                          + A +   EY ++           L      E  L  +   +  +
Sbjct: 472 -----------LDMELNALKRLCEYFEKGGLEE----GLLALARGVETPLMKVLMGMEFQ 516

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G++ID     +L++    E   L+  I+ L      +      L   L+    +   + S
Sbjct: 517 GFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NKS 574

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             T +  L        +  LIL     +         L      D ++  T    G + T
Sbjct: 575 RSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 633

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
           GR S      QN+P                                +R   IAS     L
Sbjct: 634 GRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCL 669

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K + 
Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+                                 + +   
Sbjct: 727 F--------------GLVYGMGS------------------------------KKLSETL 742

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +   +A+  +   +      + E      +    +   RV +           
Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDHIKGN 802

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
            +                                          I Q  + D+L  GM  
Sbjct: 803 YLREG------------------------------------VNAIFQGSASDLLKLGMLK 826

Query: 617 ATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEA 670
            ++         ++L VHDE++ E  +     +   +  ++     +   +PL+   + A
Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLKVPLETSAFVA 885

Query: 671 KRY 673
           KR+
Sbjct: 886 KRW 888


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEIKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/642 (12%), Positives = 154/642 (23%), Gaps = 131/642 (20%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL---FKKTL 84
             I   A   +     L D         +L Q+  ++       N+ ++        +  
Sbjct: 337 GQILGLAICNEKGFFYLNDIINDL----ELEQFFLNDNFKK---NT-YDIKKTVTLLRNN 388

Query: 85  GIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            I      +     + +       +        N +  +      +     + KG   + 
Sbjct: 389 NIKFSFSSFTYDAMIASYVLNPNVT----SRIQNLANIVETELFVEEDELFYGKGVKQNK 444

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRID 202
             D          +L   Y                 L +  E  L  +   +  +G  ID
Sbjct: 445 EIDTASKAKFIVGKLELLYSTHKPIINLLKENNQFNLYEKIELPLVEVLFNMEQKGILID 504

Query: 203 LDLVLKLQELIAQERKKLDEDIV---KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
              + K         ++L+E +    K       +      ++  LF   G+        
Sbjct: 505 KVELDKQTARTLFLIEELEEKMKVILKDQISENFNFGSPKQIKELLFDQIGLPSNKKQ-S 563

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T K  L          +L+L     +      L    + +  D ++         + TGR
Sbjct: 564 TDKEALEKIIHLHPVINLLLEHRKLNKLYSTYLRGFEKFIFDDNKVHTIFNQT-LTNTGR 622

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      QN+                                  R   I++N  K    
Sbjct: 623 LSSSEPNIQNI------------------------SVKDELQREARKIFISNNDTKFFSF 658

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE RVLA +  ED  +  F N  D++     K F                      
Sbjct: 659 DYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIF---------------------- 696

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                +  +N + TS      +  +  +         +   K+ 
Sbjct: 697 ---------------------KLEENEEITSDQRRIAKVFNFGIIYGLSDFGLSNDLKIS 735

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               +     +      ++     L              + RR+ N         K    
Sbjct: 736 IPEAKRFIDDYYLSFPKLMTYKNSLINQATVNGYAETYANRRRIVNELASSNFMVKNF-- 793

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                  R+                                 +Q  + DIL   M N  K
Sbjct: 794 -----GNRI----------------------------AVNMPIQGTAADILKVAMNNIHK 820

Query: 620 N------GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN 654
                     +   +HDEI+ E  ++    +V  +   M   
Sbjct: 821 EFRENNLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQNA 862


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 82/665 (12%), Positives = 179/665 (26%), Gaps = 144/665 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85
            +   A++   E +   D  +   +   + +   ++T + V     ++     +     G
Sbjct: 333 DLVGFAWSC-GEKLYATD--KLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRFG 384

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +D+ +  +                      L  +    ++    +L  +      ++   
Sbjct: 385 VDLQAPAFD---------------SRLAKYLLSTVEDNEIATIASLYGQTYLIDDETFYG 429

Query: 146 DCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIND 196
              +    +     +         VE    L ++L          D E+ L  +   +  
Sbjct: 430 KGVKKALPEREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEI 489

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G  +  + +L++Q       +KL ++I +L      +      L + LF   G+     
Sbjct: 490 AGITVKKETLLEMQAENDLVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYT 548

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                   T   +L            IL+    +      +  L + + +DG++      
Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQ 608

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              ++TGR S      QN+P                                +R   +  
Sbjct: 609 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 643

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429
                L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   R
Sbjct: 644 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSEDVTANDR 703

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y               L + +        + FE +   +++   +  + 
Sbjct: 704 RNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREA 758

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            +    + L     EL           +     ++               +         
Sbjct: 759 RDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI----- 804

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            ++    +          T                         
Sbjct: 805 ----------------LKIAMIQLDKALVAGGYQTK------------------------ 824

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
               +         IVL        E P +    +  L    M +       +PL A+  
Sbjct: 825 ---MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIADEN 868

Query: 669 EAKRY 673
           E   +
Sbjct: 869 EGATW 873


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 80/613 (13%), Positives = 167/613 (27%), Gaps = 126/613 (20%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             ++ G+++       T +            ++                 + +A      
Sbjct: 452 MAQSAGLNV-PIPLFDTKLAGYLADPDYTGHTIDEYAEHFL--RIDVPAVQTQAQGTLDF 508

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
               D  P    +   +QA  +         E  +     L+     E  + ++   +  
Sbjct: 509 DNMDDETPTQDDKDLGLQAALVSAMARHLARELQQREQYALLRCI--ELPVSVVLYRMEQ 566

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  +D   +  L    A+E  +++            +      +   LF   G+  +  
Sbjct: 567 EGAAVDRMRLDSLLATFAEESGRMERMAWDAAGSEF-NLSSPKKIGKVLFEDMGLTPLRK 625

Query: 257 SEG------------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DG 303
           ++                +    S        ++ +R  +    I  + TL +A++  DG
Sbjct: 626 TKSGHYTTNAATLTTLYANAEEGSAAYVFLGAILRHRGVNKLQQI--VQTLIDAINRTDG 683

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            +  T +   A  TGR S      QN+P                                
Sbjct: 684 HIHTTFEQTVA-ATGRLSSTDPNLQNIP------------------------NRNAEGRD 718

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            RS  I + G   L+ AD + +E R++A  +G++  I AF +G D +    +  +  P+D
Sbjct: 719 TRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFHRYVASLVYGIPVD 778

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
            +S +QR+  K M   L Y        +      L +     +      F  + +   + 
Sbjct: 779 DISGDQRSHVKAMSYGLAYG-----LSSYGLSQQLGITPKEADALKQQYFRTFGKVHEYL 833

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
             +     E    + + G          R     +    + + E             +  
Sbjct: 834 ESLVATARERGYTETMFGR---------RRYFPALRSPNRMVREAAERAALNAPIQGSAA 884

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                    +  + ++ + +  +                     
Sbjct: 885 DI-----------------------MKMAMIRAERALRS--------------------- 900

Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661
           Q                    IVL +HDE+V +     + S   L    M      A  +
Sbjct: 901 QG---------------MRSRIVLQIHDELVVQLAPGEHESATALVKDAMEHAVQLA--V 943

Query: 662 PLKAEGYEAKRYR 674
           PL         ++
Sbjct: 944 PLDVSTGIGTDWQ 956


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 81/667 (12%), Positives = 178/667 (26%), Gaps = 148/667 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83
            +   A++  D+       T++  +  +     +L    +        ++     +    
Sbjct: 333 DLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNR 382

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            G+D+ +  +      +R              L  +    ++    +L  +      ++ 
Sbjct: 383 FGVDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDETF 427

Query: 144 PYDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTI 194
                +    +     +         VE    L ++L          D E+ L  +   +
Sbjct: 428 YGKGVKKAIPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKM 487

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G  +  + +L++Q       +KL ++I +L      +      L + LF    +   
Sbjct: 488 EIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLALPLE 546

Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                     T   +L            IL+    +      +  L + + +DG++    
Sbjct: 547 YTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY 606

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
                ++TGR S      QN+P                                +R   +
Sbjct: 607 VQ-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFV 641

Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427
                  L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+  
Sbjct: 642 PEWENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTAN 701

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +   + Y               L + +        + FE +   +++   +  
Sbjct: 702 DRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 756

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
           +  +    + L     EL           +     ++               +       
Sbjct: 757 EARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI--- 804

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                              ++    +          T                       
Sbjct: 805 ------------------LKIAMIQLDKALVAGGYQTK---------------------- 824

Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666
                 +         IVL        E P +    +  L    M +       +PL A+
Sbjct: 825 -----MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIAD 866

Query: 667 GYEAKRY 673
             E   +
Sbjct: 867 ENEGATW 873


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 166/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRTT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G+   I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLGS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 182/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L       +    K    +     
Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEELIPHE--TIKDFKTKSRVEK 468

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
           ++           + A +   EY ++           L    + E     +   +  +G+
Sbjct: 469 LEQ------LDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 518

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E   L+  I+ L      +      L   L+    +   + S  
Sbjct: 519 KIDAPYFKRLEQEFKDELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NKSRS 576

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 577 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 635

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 636 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 671

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +   
Sbjct: 672 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 727

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 728 -------------GLVYGMGS------------------------------KKLSETLNI 744

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 745 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDHIKGNYL 804

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 805 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 828

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 829 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMAKR 887

Query: 673 Y 673
           +
Sbjct: 888 W 888


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 96/359 (26%), Gaps = 82/359 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53
             + +D ET +   +           A +   ++   +        T +  +        
Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
                                       +L   L    V  +  N  ++  +F    G+ 
Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQ 464

Query: 88  IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +    +  T + + T       ++       L       +   GK               
Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193
                     A  +  +Y   D + T +L + L P  +            E  L  +   
Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           I   G  ID + +L     I Q   +L++ +     G I +   T  L+  LF   G+  
Sbjct: 569 IERNGVLIDPEKLLAQSVEIEQRLSELEQLVH-SEAGEIFNLASTKQLQEILFTKLGLPV 627

Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLR 306
                  +  T + +L        L   L++     S       + L   ++   GR+ 
Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVH 686


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++ +D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPDIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL     +      +  L + + +DG++         ++TGR 
Sbjct: 561 AVDVLERLAPIAPIVAKILAYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE + + +++   +  +  +    + L
Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGYVETL 770

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 184/666 (27%), Gaps = 146/666 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85
            +   +++  D   KL+   +   +   + +   ++T + V     ++     +     G
Sbjct: 333 DLVGFSWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLNRFG 384

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +D+ +  +      +R              L  +    ++    +L  +      ++   
Sbjct: 385 VDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195
              +    +  + F E+  R +    E    L+             D E+ L  +   + 
Sbjct: 430 KGVKKAIPE-REKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G ++  + +L++Q       +KL ++I +L      +      L + LF    +    
Sbjct: 489 IAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLELPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     + V+   
Sbjct: 643 EREDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKGAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/648 (13%), Positives = 168/648 (25%), Gaps = 147/648 (22%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLPSSLKNACLALNF 118
               V  N+  F R +  +  G D   K           V A                  
Sbjct: 314 KCPVVCFNAKDFVRTVL-QLYGEDDSWKHVADFVGLDPRVAAWLIDPSD----------- 361

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRL 177
           +    +    K L          +                    Y     + T +L  +L
Sbjct: 362 TAPSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKL 416

Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                       E  L  +   + +    +D + + +   L+    K+L+++      G 
Sbjct: 417 KAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGE 475

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILN 280
                    LR  LF    + L+   +            T +++L+          LIL 
Sbjct: 476 QFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILE 535

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      ++ L   +   G +  T    G + TGR S      Q + +        
Sbjct: 536 YRQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKP 593

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                      TI+          R+  ++S G   + AD + IE R+LA ++G+   +K
Sbjct: 594 WNFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 644

Query: 401 AFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F   E    + T  ++  + PI++V+   R   K +  ++ Y  G +            
Sbjct: 645 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC------- 697

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                                  +         + +  K++ + 
Sbjct: 698 -------------------------------------LGVTVLEATHFLERFLQKYKKIK 720

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              + +             +                           RR     +     
Sbjct: 721 DFAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ 754

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDE 631
                 +Q  R+          +VQ  + D+    M   +            +V  +HDE
Sbjct: 755 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 805

Query: 632 IVSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673
           ++ E  DT       L   +M      +       +PLK      + +
Sbjct: 806 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             + +  + L     EL           +     ++               +        
Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87
             +AW                    L  L  ++   V     + ++     +    LGI+
Sbjct: 265 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 315

Query: 88  IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           +         +          + L                   +     + KG+  + P 
Sbjct: 316 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 367

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                 H+          K  +       ++L    + E  L  +   +   G +++   
Sbjct: 368 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 427

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260
           +  + E      + L ++I  +      +      L   LF    +             T
Sbjct: 428 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 486

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
              +L            IL+    +      +  L + + +DG++         ++TGR 
Sbjct: 487 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 545

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
           S      QN+P                                +R           L+ +
Sbjct: 546 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 581

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438
           D + IE RVLA I+G++  I AF  G DI+ +T  + F       V+   R   K +   
Sbjct: 582 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 641

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y               L + +        + FE +   +++   +  +  +    + L
Sbjct: 642 IVYG-----ISDFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 696

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557
                EL           +     ++        +      SA  +  +  + + +  + 
Sbjct: 697 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 747

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                                                                 + +   
Sbjct: 748 GGFR-------------------------------------------------AKMLLQV 758

Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
                 IVL        E P+    ++  L    M      A  +PL  +    + +
Sbjct: 759 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 802


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 153/500 (30%), Gaps = 121/500 (24%)

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  +  ++   G +++  ++  +   + +  +++ E+I     G   +      +   
Sbjct: 456 MPLVPVLVSMEKSGIKLEEPVLQDVISDLKERLERIVEEIT-SAAGESINLNSPKQVGCL 514

Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           LF   G+  V  ++         L+ +            ++L   A S  +      L  
Sbjct: 515 LFEKLGLPPVKKTKTGYSTDVTVLEQLAELPEPHNAVPSMLLEHRALSKMSSGFALPLMS 574

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           +V  DG +R T +    + TGR S      QNLP                          
Sbjct: 575 SVCGDGIIRSTFE-SDTTGTGRLSSRDPNLQNLP------------------------AY 609

Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
           G  SD ++S +I    G+  V AD + +E RVLA I+GE      F +G DI+  T +  
Sbjct: 610 GEWSDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMV 669

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F      V+KE R   K++   L                                     
Sbjct: 670 FGVDSSMVTKELRRSAKMVTFGLL------------------------------------ 693

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           A +  +  +  + +   + A   GV      +T+     + +G 
Sbjct: 694 --------YGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEAY---VTKSADEAIAKGY 742

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           + +                          R     +V    +       ++         
Sbjct: 743 TETL-----------------------FGRIRPLEEVVTGNTRDRGHIRRV--------- 770

Query: 597 LTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650
              + +Q  + D+  + M              +VL VHD IV E P+     V   L  +
Sbjct: 771 AINSPIQGTAADLAKKAMIAVSRSFAEDPDVSMVLQVHDSIVCECPEERSEEVLAELQEI 830

Query: 651 MTKNPSWAKGLPLKAEGYEA 670
           M    S A  +PL+ EG   
Sbjct: 831 MKNVASLA--VPLETEGKIG 848


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/615 (13%), Positives = 169/615 (27%), Gaps = 132/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L       + 
Sbjct: 393 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EE 446

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +             + A +   EY ++           L    + E 
Sbjct: 447 WIPHEKIKDF--KTKSKAGKLEQLDMELNALKRLCEYFEKGGLEE----GLLALAREVET 500

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID     +L++    E   L+  I+ L      +      L   L
Sbjct: 501 PFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVDF-NLNSPKQLSEIL 559

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +    +   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 560 YEKLELP-KNKSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 618

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   + AF  G DI++ T    F    + +
Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDL 710

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +  +  +   +A+  +   +      + E      +    +   RV 
Sbjct: 732 -----KKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 786

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +        +                                          I Q 
Sbjct: 787 DFTGVNDHIKGNYLREG------------------------------------VNAIFQG 810

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 811 SASDLLKLGMLKVSERFKNNPLVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + AKR+
Sbjct: 870 LRVPLETSAFMAKRW 884


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/660 (13%), Positives = 184/660 (27%), Gaps = 140/660 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
               + +   R   T +LA                      L +       I  F   + 
Sbjct: 411 AKYQVSVEDIRIQDTQILAFLKNPEKVGFDEVLKQY-----LKEEWIPHEKIKDF--KTK 463

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           +        +  + A +   EY ++           L    + E     +   +  +G++
Sbjct: 464 NKAEKLELLSVELNALKRLCEYFEKGGLEE----GLLALAREVETPFVKVLMGMEFQGFK 519

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
           ID     +L++    E   L+  I++L      +      L   L+    +   + S  T
Sbjct: 520 IDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELP-KNKSHST 577

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            +  L        +  LIL     +         L      D ++  T    G + TGR 
Sbjct: 578 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRL 636

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +R   I+S     L+  
Sbjct: 637 SSHSPNLQNIP------------------------VRSPKGLLIRKGFISSSKEYCLLGV 672

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +    
Sbjct: 673 DYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF-- 727

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+                                 + +    + 
Sbjct: 728 ------------GLVYGMGS------------------------------KKLSETLNIP 745

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               +   +A+  +   +      + E      +    +   RV +   +        + 
Sbjct: 746 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGVNDHIKGNYLR 805

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                                                    I Q  + D+L  GM   ++
Sbjct: 806 EG------------------------------------VNAIFQGSASDLLKLGMLKVSE 829

Query: 620 N-----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR+
Sbjct: 830 RFKNNPSVRLLLQVHDELIFEIEEKNALELQREIQRILNDEV-YPLRVPLETSAFIAKRW 888


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
          Length = 877

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYL 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             + +  + L     EL           +     ++               +        
Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 181/666 (27%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++ +D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             + +  + L     EL           +     ++               +        
Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/677 (12%), Positives = 170/677 (25%), Gaps = 147/677 (21%)

Query: 24  YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
           + ++  I    +  D     L D  +       +L  + +E V  V ++           
Sbjct: 337 HIDKPEIYAAYFNVDGNIWLLDDMAQ----IHRVLDIVAEEKVKVVGYDLK---NALFAL 389

Query: 84  LGIDIPS-KRWICTSVLARTNGLPSS-LKN---ACLALNFSEHLTKMEEGKALIARFCKG 138
           L   +P    +    +           +         L       K+ + K         
Sbjct: 390 LQNGLPLFTPFFDVMLAYEVINNKGKYMDFYKILEDQLGID-VSDKLLKAKRKKTLTADD 448

Query: 139 SID--------------------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             +                        + +  N     +    Y    V    +++ +L 
Sbjct: 449 IKERYANICKSLKKTNNDVVNAALGDVESSDENARIGHEDALLYLLETVNI-FKVYDKLK 507

Query: 179 PLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              +           E  L  +  ++ + G  +D + +   +  ++    +L + I +L 
Sbjct: 508 SQIEEDDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAELLDKIYELA 567

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    ++    ++    T   +L     T    DLIL     S
Sbjct: 568 GFEF-NVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAEVLQKLRKTHPIIDLILEFRKVS 626

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +        +DG++R      GAS TGR +      Q +P              
Sbjct: 627 KLNSTYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPALQTIP-------------- 671

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R    A   +  V AD + IE R+L  ++ ++  I AF +G
Sbjct: 672 ----------VKTDMGKRIRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSG 721

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           EDI+              VSK  R+  K +   + Y               L++ +    
Sbjct: 722 EDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGMS-----DFGLSNELEISRKDAK 776

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                 F        +    +    +        G   ++           +      + 
Sbjct: 777 KYIDEYFAKHRAVYEYMEAQKSIAKQTGAVRTETGRIRKI---------PEINAQNIMVR 827

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                                                    RL  +        +     
Sbjct: 828 N-------------------------------------LGERLAMNSP---IQGMGADIM 847

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           +L     Y         Q +                  IVL +HDE+V +   +    V 
Sbjct: 848 KLAMNNVYRAIQK----QGL---------------DAKIVLQIHDELVIDASVSDGEKVK 888

Query: 646 T-LCSLMTKNPSWAKGL 661
             L   M    +   GL
Sbjct: 889 KLLKDEMEAAYNLKTGL 905


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYL 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             + +  + L     EL           +     ++               +        
Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL        E P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/497 (16%), Positives = 134/497 (26%), Gaps = 106/497 (21%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E  L  +   +   G  ID          +  +  +L   I+        + R +  L
Sbjct: 489 ELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLDELTRSIIGYAGEEF-NIRSSQQL 547

Query: 242 RMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
            + LF   GI     +      T   +L          D +L            L  L +
Sbjct: 548 AVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKLRSTYLEPLPK 607

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  DGRL        ++ TGR S      QN+P                          
Sbjct: 608 MVGEDGRLHTHFNQL-STATGRLSSSQPNLQNIP------------------------IR 642

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
           G+    +R+C  A+ G  L  AD + IE RVLA  + +   I AF + EDI+  T A   
Sbjct: 643 GVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHARTAALIH 702

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           +  I  V+ ++R   K +   L Y  G +          L ++Q      +   F     
Sbjct: 703 DKDISAVTPDERRGAKTINFGLIYGMGVQKL-----ARELQIKQTEAQEFTEKYFAKMAT 757

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            ++++  +            L G          R     +      L+            
Sbjct: 758 LKAYYDTVVKDAETHGFVTTLAGR---------RRLLPELHSRNNQLSAQARRQAVNTVI 808

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
             +                          ++                 +  R R  G +L
Sbjct: 809 QGSAADII---------------------KMAMVQAH-----------KDKRLRELGAQL 836

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656
                                             ++ E P+       G L  +M     
Sbjct: 837 I----------------LQVHDE-----------LIIEAPEANIKEAGGRLLEIMQTVAK 869

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PLK +    K +
Sbjct: 870 --LDVPLKVDMGVGKNW 884


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/664 (12%), Positives = 176/664 (26%), Gaps = 144/664 (21%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERI 78
           +   I   A+   D+        E          + +   Q L+   +  + H+      
Sbjct: 357 KDKKILALAFLLQDQ-GYFLPLEEALFSPFSLEFLQNAFSQMLQHAQI--IGHDLKPLLS 413

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFC 136
             K    + + + R   T +LA                 L               I  F 
Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFK 467

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
             +              +  + F +    +   +             E     +   +  
Sbjct: 468 TKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLA--------RGVETPFMKVLMGMEF 519

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID     +L++    E   L+  I+ L      +      L   L+    +   + 
Sbjct: 520 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLGEVLYEKLELP-KNK 577

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S  T +  L        +  LIL     +         L      D ++  T    G + 
Sbjct: 578 SHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 636

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   IAS     
Sbjct: 637 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 672

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++K++R+I K +
Sbjct: 673 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSI 729

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+                                 + +  
Sbjct: 730 NF--------------GLVYGMGS------------------------------KKLSET 745

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  +  +   +A+  +   +      + E      +    +   R  +          
Sbjct: 746 LNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRAFDFTGANDYIKG 805

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
             +                                          I Q  + D+L  GM 
Sbjct: 806 NYLREG------------------------------------VNAIFQGSASDLLKLGML 829

Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  +     +   +  ++     +   +PL+   + 
Sbjct: 830 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFV 888

Query: 670 AKRY 673
           A R+
Sbjct: 889 ANRW 892


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 126/420 (30%), Gaps = 117/420 (27%)

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322
           +L    +      +++     +       + L + ++   GR+  +      + TGR S 
Sbjct: 1   MLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSS 59

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                QN+P                                +R   +A +G K++  D +
Sbjct: 60  TDPNLQNIP------------------------VRNEEGRRIRQAFVAPHGWKIMAVDYS 95

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            IE R++A ++G+   + AF +G+DI+  T A+    PID+VS EQR   K +       
Sbjct: 96  QIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF----- 150

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                        G+                                   A +  +    
Sbjct: 151 ---------GLIYGMS------------------------------AFGLAKQLGIPRGE 171

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  ++ GV+Q  +D     A +                               
Sbjct: 172 AQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIF------------------------ 207

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619
              RRL       + +  N    +   R            +Q  + DI+ + M    +  
Sbjct: 208 --GRRLHLP----EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWI 255

Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    +++ VHDE+V E  ++    +   +  LM      A  +PL AE      +
Sbjct: 256 EREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 313


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/661 (13%), Positives = 179/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+   D+        E          + +   Q L+  ++  + H+        K
Sbjct: 346 KVLALAFLLQDQ-GYFLPLEEALFSPFSSEFLQNAFSQMLQHASI--IGHDLKPLLSFLK 402

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L               I  F   S
Sbjct: 403 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTTS 456

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                        + A +    Y ++           L    + E     +   +  +G+
Sbjct: 457 KAEKLER--LDMELNALKRLCAYFEKGGLEE----GLLALAREVETPFVKVLMGMEFQGF 510

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E K L+  I++L      +      L   L+    +   + S  
Sbjct: 511 KIDAPYFKRLEQEFKDELKVLERQILELIGVDF-NLNSPKQLSEVLYEKLELP-KNKSHS 568

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 569 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 627

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 628 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 663

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I K +   
Sbjct: 664 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGE---LAKEKRSIAKSINFG 720

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           L                                                   + +    +
Sbjct: 721 LV--------------------------------------------YGMGSKKLSETLNI 736

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +            +
Sbjct: 737 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYL 796

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 797 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 820

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR
Sbjct: 821 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMAKR 879

Query: 673 Y 673
           +
Sbjct: 880 W 880


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/664 (13%), Positives = 186/664 (28%), Gaps = 148/664 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKNAC-LALN---FSEHLTKMEEGKALIARFC 136
               + + + R   T +LA                 L          K  + K+ + +  
Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEELIPHETIKDFKTKSKVEKLE 470

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           +               + A +   EY ++           L      E  L  +   +  
Sbjct: 471 Q-----------LDMELNALKRLCEYFEKGGLEE----GLLALARGVETPLMKVLMGMEF 515

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
           +G++ID     +L++    E   L+  I+ L      +      L   L+    +   + 
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NK 573

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S  T +  L        +  LIL     +         L      D ++  T    G + 
Sbjct: 574 SRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 632

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375
           TGR S      QN+P                                +R   IAS     
Sbjct: 633 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 668

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +
Sbjct: 669 LLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 725

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G+                                 + +  
Sbjct: 726 NF--------------GLVYGMGS------------------------------KKLSET 741

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     +   +A+  +   +    K + E      +    +   RV +   +      
Sbjct: 742 LNIPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSKAFTLLGRYRVFDFAGVNDHIKG 801

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
             +                                          I Q  + D+L  GM 
Sbjct: 802 NYLREG------------------------------------VNAIFQGSASDLLKLGML 825

Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  +     +   +  ++     +   +PL+   + 
Sbjct: 826 KVSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLRVPLETSAFM 884

Query: 670 AKRY 673
           AKR+
Sbjct: 885 AKRW 888


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/675 (12%), Positives = 177/675 (26%), Gaps = 150/675 (22%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--------LQYLRDETVMCVAHNSLFERI 78
              +    Y  D+    +W   ++      L          +L   ++        ++  
Sbjct: 321 HFELFGENYHTDNLVGFVWSCGDKLYATDKLELLQDPIFKDFLEKTSLRV------YDFK 374

Query: 79  ---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
              +  +  G+D+ +  +                      L  +    ++    +L  + 
Sbjct: 375 KVKVLLQRFGVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQT 419

Query: 136 CKGSIDSPPYDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERD 186
                ++      +    +     +         VE    L ++L          D E+ 
Sbjct: 420 YLVDDETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQP 479

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           L  +   +   G  +  + +L++Q       +KL ++I +L      +      L + LF
Sbjct: 480 LAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLF 538

Query: 247 LITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              G+             T   +L            IL+    +      +  L + + +
Sbjct: 539 EKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILA 598

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DG++         ++TGR S      QN+P                              
Sbjct: 599 DGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------ARLEQG 633

Query: 362 DCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   +       L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F   
Sbjct: 634 RLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIE 693

Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             D V+   R   K +   + Y               L + +        + FE +   +
Sbjct: 694 RPDDVTANDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIK 748

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           ++   +  +  +    + L     EL           +     ++               
Sbjct: 749 NYMDEVVREARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQG 799

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           +                          ++    +          T               
Sbjct: 800 SAADI---------------------LKIAMIQLDKALVAGGYQTK-------------- 824

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWA 658
                         +         IVL        E P +    +  L    M +     
Sbjct: 825 -------------MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ-- 858

Query: 659 KGLPLKAEGYEAKRY 673
             +PL A+  E   +
Sbjct: 859 LSVPLIADENEGATW 873


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/496 (16%), Positives = 141/496 (28%), Gaps = 113/496 (22%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +++ +  L      +  RG R+D + +L L   + ++   + E + +     I +     
Sbjct: 465 MNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEKVYEAAGCEI-NLNSPK 523

Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   LF   G+ +V  ++         L+ +             +L        A   +
Sbjct: 524 QIGELLFEKLGLPVVKKTKTGYSTDVSVLEQLREICGARCEIPGQLLEYRELQKMASGFV 583

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L  A   DG +  T +    + TGR S      QNLP                     
Sbjct: 584 QPLLSAAGGDGLIHSTFESLT-TGTGRLSSRDPNMQNLP--------------------- 621

Query: 353 IADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                      +R C+I S  G     AD + IE RVLA ++G+   I+ F +  DI+  
Sbjct: 622 ---TYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTE 678

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T A  F  P D V+KE R   K +   L Y               L   + +      + 
Sbjct: 679 TAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSV-----FGLASRLGTDRNTAFQIMDAY 733

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
           F        +    + +  EF     L G    + + A   + +   +            
Sbjct: 734 FAALPGVREYMETSKKKSLEFGYTSTLFGRRRPMDEIATGNQTKDHQK------------ 781

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                                              R+  +      +   T  +      
Sbjct: 782 -----------------------------------RVAINAPIQGTAADITKIAMNKVAA 806

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSL 650
            + G+                 M           L VHD IV E P          L  +
Sbjct: 807 HFAGRDV--------------AMV----------LQVHDSIVCECPHDQAEQTALELSQV 842

Query: 651 MTKNPSWAKGLPLKAE 666
           M         +PLK E
Sbjct: 843 MESAVH--LSVPLKTE 856


>gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis
           familiaris]
          Length = 947

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/644 (11%), Positives = 160/644 (24%), Gaps = 139/644 (21%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWI----CTSVLARTNGLPSSLKNACLALNFS 119
               +  N+  F R + +                    + A                  +
Sbjct: 313 KCPVICFNAKDFVRTVLQIFGNEGSWKHVVHFVGLDPRIAAWLIDP-----------GEA 361

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----K 175
               +    K L +        +         +           +  +    +L      
Sbjct: 362 ATSFEDLVAKFLESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLW 421

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L      E  L  +   +     R++ + + +   L+    K+L+++      G     
Sbjct: 422 QLFCTL--ELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAH-FVAGEQFLI 478

Query: 236 RQTYALRMYLFLITGI-------DLVDMS----EGTLKSILSHSNITQLAKDLILNRLAS 284
                L+  LF    +        L          T +++L+          +IL     
Sbjct: 479 TSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRRV 538

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
             +    ++ L   V   G +       G + TGR S      Q + +            
Sbjct: 539 HKTKSAFVDGLLAFVRK-GSISSMWNQTG-TVTGRLSARHPNIQGISKHPIKITKPQNFK 596

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                  TI+          RS  +A      + AD + IE R+LA ++G+   +K F  
Sbjct: 597 GTEGTMLTISP---------RSMFVAPESHTFLAADFSQIELRILAHLSGDPELLKLFRE 647

Query: 405 --GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              +D++ T  ++  + P + V+   R   K +  ++ Y  G +                
Sbjct: 648 SGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAAC----------- 696

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +         +++  K++ +    +
Sbjct: 697 ---------------------------------LGVTVQEAAQFLESFLQKYKKIKDFVQ 723

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                          +                           RR     V         
Sbjct: 724 TTIAQCHQTGYVASIM--------------------------GRRRPLPRVHDQDQ---Q 754

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSE 635
             +Q  R+          +VQ  + D+    M    +           +V  +HDE++ E
Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKMAMIRIFRAVATSPTLTARLVAQIHDELLFE 808

Query: 636 TPDTPYFSVGTLCS-LMT-----KNPSWAKGLPLKAEGYEAKRY 673
             D+       L    M      +       +PLK        +
Sbjct: 809 VEDSQIPEFAALVRGTMESLQYVRALGLQLQVPLKVSLSAGPSW 852


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/627 (14%), Positives = 175/627 (27%), Gaps = 175/627 (27%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNG-LPSSLKNA 112
           L     D ++  + H           +  I  P   +  +    V+A     L + L+  
Sbjct: 333 LQDLFTDRSIKKIFH-----------SDNIPHPDPTNDSFEDLKVIAYPLNTLNTDLEYL 381

Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD-VEAT 170
               L                                 A H +  +L+ + C     E  
Sbjct: 382 FSHYLG---------------------------ETSREAFHKRLNELYEKLCNAMFTEKV 414

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             L+ ++         L    + +   G  +D++ +L L   I+ + ++++  I  +  G
Sbjct: 415 LTLYYKVDK------PLINAIKHMEKNGISLDVEQLLSLSTQISGKLEEIESKIFDIA-G 467

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLASS 285
              S +    L   LF    I +    +     T   +L+  +I      D +L+     
Sbjct: 468 KTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIADYLLSWRHYI 527

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRT--GRWSGCVFQPQNLPRQERSEEILTQT 343
                 ++ L   V+ +         Y A+ T  GR S      QN+PR+          
Sbjct: 528 KLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPRE---------- 577

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R    A  G   + AD + IE R+LA+IA  +    A A
Sbjct: 578 ------------------KEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALA 619

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           +G D++  T ++ F T  DK++ + R   K +   + Y               L      
Sbjct: 620 SGTDLHTLTASQIFKT--DKITPDLRNKAKAVNFGIVYG-----ITNFGLSKQLA----- 667

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             +         + +  ++  +      
Sbjct: 668 ----------------------------------ISKEEAASYIQKYFDEYPEIKIYMNH 693

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +             ++ +                               ++   S   T 
Sbjct: 694 IRNQARKDTYVKTMMNRKCP-----------------------------IQNINSNNRTI 724

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---YDIVLTVHDEIVSETPDTP 640
           +    R            +Q  + DI+   M    +       +V+ VHDE+V E     
Sbjct: 725 SLVAERSAINAP------IQGTAADIIRTAMVRMAQEKELLSHMVMQVHDELVFELETDV 778

Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAE 666
                  +  +M +    + G+PL  E
Sbjct: 779 IQQLAKKIKRIMEE----SHGIPLLVE 801


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/610 (12%), Positives = 166/610 (27%), Gaps = 130/610 (21%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140
           G+ +  +    T +                     L+           +  +        
Sbjct: 447 GVKL-PEPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEPEES 505

Query: 141 DSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                D    +      L        D      L + +      E  +  +   +   G 
Sbjct: 506 VQQKDDQLPRHTAIVGLLARNLSNSLDQREQFALLESV------EIPVSRVLYGMEHAGA 559

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           ++D++ ++ ++E +A +     ++      G   + +    L+  LF   G+     ++ 
Sbjct: 560 QVDMNRLMNMREQLASD-ANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKT 618

Query: 260 ----TLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLR 306
               T  + L              Q    L+L+R  +    I  + TL +A + SDGR+ 
Sbjct: 619 GSYTTNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLKQI--VQTLIDATNGSDGRIH 676

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            T +   A  TGR S      QN+P                            A   +RS
Sbjct: 677 TTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPAGREIRS 711

Query: 367 CIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             +   G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  P+D+++
Sbjct: 712 AFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEIT 771

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
            +QR+  K M   L Y        T      L ++           F  + +   +   +
Sbjct: 772 SDQRSHVKAMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKQQYFATFGKVHEYLESL 826

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                E    + + G          R    G+    + + +             +     
Sbjct: 827 VSTAREKGYTETIYGR---------RRYFPGLKSPNRAVRDAAERAALNAPIQGSAADI- 876

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                                ++                                    +
Sbjct: 877 --------------------MKIAMIRADDALHES-----------------------GL 893

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664
           +  I+                    E+V E           L    M      A  +PL 
Sbjct: 894 ASRII----LQIHD-----------ELVVEIAPGEAEQATALVKDAMEHAVDMA--VPLD 936

Query: 665 AEGYEAKRYR 674
                   ++
Sbjct: 937 VSTGIGSDWQ 946


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 142/449 (31%), Gaps = 68/449 (15%)

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
            T++ A          +L +  L     E   +                           
Sbjct: 402 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 449

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205
             +  Q      +  ++    L   L  +       + E  +  +   +   G  +DL +
Sbjct: 450 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 509

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262
           + +LQ     + +    +      G   +      L++ LF   G+     ++    T  
Sbjct: 510 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 568

Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L              +L     +   +  ++ L +AV++DGR+  T     A  TGR 
Sbjct: 569 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 626

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                            A   +R   +  +G  +L+ A
Sbjct: 627 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 662

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R++A ++G++  I+AF  GED++    ++AF  PID+V+ E R   K M   L
Sbjct: 663 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 722

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y               L +     N +  + F  +     +   + ++  +      ++
Sbjct: 723 AYG-----LSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL 777

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGF 528
           G          R     +    + + E  
Sbjct: 778 GR---------RRYLPELDSSNRQVREAA 797


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/626 (14%), Positives = 172/626 (27%), Gaps = 120/626 (19%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLA 115
           ++L D  V   +H+         +  G  +       T++ A           L +  L 
Sbjct: 418 EWLADPAVPKASHDVKAVLHAL-RGRGWTLAGLT-SDTALAAYLAKPGQRSFDLADLALR 475

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
               E   +       ++           +         A     +      E   +   
Sbjct: 476 YLRRELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELAD--ALGAELAEKEQN 533

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            L  L + E+ L  +   +   G  +D   +  L+   A +  +  +D   +    I + 
Sbjct: 534 GL--LLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVIGKEI-NL 590

Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILS---HSNITQLAKDLILNRLASSGSAI 289
                L++ LF   G+     ++    T    L+        +  + L+L+R A+     
Sbjct: 591 GSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHRDATRLKVT 650

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             ++ L +++++DGR+  T     A  TGR S      QN+P                  
Sbjct: 651 --VDGLLKSIAADGRIHTTYSQTIA-ATGRLSSTEPNLQNVP------------------ 689

Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                     A   +R+  +  +G  +L+ AD + IE R++A ++ +   I+AF +  D 
Sbjct: 690 ------IRTAAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDF 743

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           +  T +K F      VS EQRA  K M   L Y               L +         
Sbjct: 744 HSETASKVFGVDAADVSPEQRAKIKAMNYGLAYG-----LSAFGLSGQLRISTEEARGLM 798

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              FE +     +   + D   +      ++G          R     +    +   E  
Sbjct: 799 DDYFETFGGVRDYLRSIVDVARKDGYTATMLGR---------RRYLPDLTSDNRQRREMA 849

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
             +        +                          ++    V          +    
Sbjct: 850 ERMALNAPIQGSAADII---------------------KVAMLRVHAALQAEGLRSR--- 885

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                                    +         +VL        E  D    +V  L 
Sbjct: 886 ------------------------MLLQVHDE---LVL--------EVADGERDAVDALV 910

Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRY 673
              M         +PL+        +
Sbjct: 911 RREMAAAHE--LSVPLEVSVGYGASW 934


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/665 (14%), Positives = 176/665 (26%), Gaps = 132/665 (19%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
           L + + D       D T    +P D   L ++L D     +  ++           G+ +
Sbjct: 354 LVSLS-DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALS-ARGLTL 409

Query: 89  PSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTK-------MEEGKALIARFCK 137
                   S+             ++      L                  G++  A   +
Sbjct: 410 DGV-IADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQANDGPGESQSAFDLE 468

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
                       A+  +A  L       D +        L   +D E  +      + D 
Sbjct: 469 ALTSDAVPATHMASARRAAVLLPLQVVLDEQMAARDAVGLF--TDLEMPVAATLTVMEDA 526

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D  ++   +  +        E         + +      L+  LF    +     +
Sbjct: 527 GIAVDDAVLAARETELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELKMPKTRKT 585

Query: 258 EG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
           +    T    L+           + L+ +R A        +  L +A+ +DGR+  T Q 
Sbjct: 586 KTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQADGRIHTTFQQ 643

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P                                +R      
Sbjct: 644 TIA-ATGRLSSTDPNLQNIP------------------------ARHEEGMRIREAFTVG 678

Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G   L+ AD + IE R++A ++G+   I+AF +GED++    A      +  V+ +QR+
Sbjct: 679 EGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVTAQQRS 738

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K M   L Y        T      L +          + F  + +   +   + +Q  
Sbjct: 739 HVKAMSYGLAYG-----LSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQAR 793

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                + + G          R     +    +   E             +          
Sbjct: 794 RDGYTETMFGR---------RRYLPDLTSDNRQRREMAERAALNAPIQGSAADIV----- 839

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                           +    DV G  +                        Q +S  IL
Sbjct: 840 ----------------KKAMIDVDGALTE-----------------------QGLSSRIL 860

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYE 669
                              DE++ E       +V + L   M         +PL      
Sbjct: 861 ----LQIH-----------DELLIEVAPGEAAAVESLLKEQMGGAAE--LSVPLDVAVGR 903

Query: 670 AKRYR 674
            + +R
Sbjct: 904 GQTWR 908


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/661 (13%), Positives = 182/661 (27%), Gaps = 142/661 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+ ++D+        E          + +   + L+   +  + H+        K
Sbjct: 360 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLSFLK 416

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139
               + + + R   T +LA                 L       +       I  F   S
Sbjct: 417 AKYQVPLENIRIQDTQILAFLKNPEKVGFDAVLKEYLK------EDLIPHEKIKDFKTTS 470

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
                   +    + A +   EY ++           L      E     +   +  +G+
Sbjct: 471 KAEKSEQLSLE--LNALKRLCEYFEKGGLEE----NLLSLARGVETPFVKVLMDMEFQGF 524

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +ID     +L++    E K L+  I+ L      +      L   L+    +   + S  
Sbjct: 525 KIDAPYFKRLEQEFKDELKVLERQILDLIGVDF-NLNSPKQLSEVLYEKLELPQ-NKSHS 582

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L        +  LIL     +         L      D ++  T    G + TGR
Sbjct: 583 TDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 641

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378
            S      QN+P                                +R   IAS     L+ 
Sbjct: 642 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 677

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R+LA  + +   ++AF  G DI++ T    F      ++KE+R+I K +   
Sbjct: 678 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSINFG 734

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                 + +    +
Sbjct: 735 --------------LVYGMGS------------------------------KKLSETLNI 750

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                +   +A+  +   +      + E      +    +   RV +   +        +
Sbjct: 751 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYL 810

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                                                     I Q  + D+L  GM   +
Sbjct: 811 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 834

Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           +         ++L VHDE++ E  +     +   +  ++     +   +PL+   + A R
Sbjct: 835 ERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVANR 893

Query: 673 Y 673
           +
Sbjct: 894 W 894


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 189/655 (28%), Gaps = 128/655 (19%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +   A A     V   + +    + + L  +  D+      + S  +     +  GID+
Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141
                    VLA       +          S     ME G    A  F K        + 
Sbjct: 384 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 432

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S P D ++   + A +L        V+   +  K +      E+ L  +   +   G  +
Sbjct: 433 SLPRDPSQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 490

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D   +  L   + +E ++  ++I  L      + +    L   L+   GI+ VD ++ T 
Sbjct: 491 DSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 549

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L            IL   A+       +  L + +++   R+  T    G + TGR 
Sbjct: 550 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 608

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                                +R            + A
Sbjct: 609 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 644

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+QR   K +   L
Sbjct: 645 DYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGL 704

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y       +       L +          + F  +  A        +Q  +      ++
Sbjct: 705 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 759

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G        +      G            A       +++ R   +   L+         
Sbjct: 760 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 795

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                  +L   ++  +       +                             +     
Sbjct: 796 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 821

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                       ++ E P      + +L    M         +PL       K +
Sbjct: 822 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 189/655 (28%), Gaps = 128/655 (19%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +   A A     V   + +    + + L  +  D+      + S  +     +  GID+
Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141
                    VLA       +          S     ME G    A  F K        + 
Sbjct: 384 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 432

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S P D  +   + A +L        V+   +  K +      E+ L  +   +   G  +
Sbjct: 433 SLPRDPAQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 490

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D   +  L   + +E ++  ++I  LT     + +    L   L+   GI+ VD ++ T 
Sbjct: 491 DSQGLAVLDRDLTKELEECSQEIYDLTGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 549

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L            IL   A+       +  L + +++   R+  T    G + TGR 
Sbjct: 550 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 608

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                                +R            + A
Sbjct: 609 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 644

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K++R   K +   L
Sbjct: 645 DYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAVNFGL 704

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y       +       L +          + F  +  A        +Q  +      ++
Sbjct: 705 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 759

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G        +      G            A       +++ R   +   L+         
Sbjct: 760 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 795

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                  +L   ++  +       +                             +     
Sbjct: 796 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 821

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                       ++ E P      + +L    M         +PL       K +
Sbjct: 822 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 91/660 (13%), Positives = 182/660 (27%), Gaps = 140/660 (21%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81
            +   A+  +D+        E          + +   + L+   +  + H+        K
Sbjct: 354 KVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410

Query: 82  KTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140
               + +   R   T +LA                      L +       I  F   + 
Sbjct: 411 AKYQVSLEDIRIQDTQILAFLKNPEKVGFDEVLKQY-----LKEEWIPHEKIKDF--KTK 463

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                    +  + A +   EY ++           L    + E     +   +  +G++
Sbjct: 464 SKAGKLELLSVELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGFK 519

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
           ID     +L++    E   L+  I++L      +      L   L+   G+   + S  T
Sbjct: 520 IDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLGLP-KNKSHST 577

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            +  L        +  LIL     +         L      D ++  T    G + TGR 
Sbjct: 578 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRL 636

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379
           S      QN+P                                +R   IAS     L+  
Sbjct: 637 SSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLGV 672

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R+LA  + +   + AF  G DI++ T    F    + ++KE+R+I K +    
Sbjct: 673 DYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF-- 727

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                           G+                                 + +    + 
Sbjct: 728 ------------GLVYGMGS------------------------------KKLSETLNIP 745

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               +   +A+  +   +      + E      +    +   RV +            + 
Sbjct: 746 LNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLR 805

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                                                    I Q  + D+L  GM   ++
Sbjct: 806 EG------------------------------------VNAIFQGSASDLLKLGMLKVSE 829

Query: 620 N-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                    ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR+
Sbjct: 830 RFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMAKRW 888


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 188/655 (28%), Gaps = 128/655 (19%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +   A A     V   + +    + + L  +  D+      + S  +     +  GID+
Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141
                    VLA       +          S     ME G    A  F K        + 
Sbjct: 384 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 432

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S P D  +   + A +L        V+   +  K +      E+ L  +   +   G  +
Sbjct: 433 SLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 490

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D   +  L   + +E ++  ++I  L      + +    L   L+   GI+ VD ++ T 
Sbjct: 491 DSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 549

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L            IL   A+       +  L + +++   R+  T    G + TGR 
Sbjct: 550 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 608

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                                +R            + A
Sbjct: 609 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 644

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+QR   K +   L
Sbjct: 645 DYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGL 704

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y       +       L +          + F  +  A        +Q  +      ++
Sbjct: 705 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 759

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G        +      G            A       +++ R   +   L+         
Sbjct: 760 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 795

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                  +L   ++  +       +                             +     
Sbjct: 796 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 821

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                       ++ E P      + +L    M         +PL       K +
Sbjct: 822 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 188/655 (28%), Gaps = 128/655 (19%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            +   A A     V   + +    + + L  +  D+      + S  +     +  GID+
Sbjct: 329 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 385

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141
                    VLA       +          S     ME G    A  F K        + 
Sbjct: 386 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 434

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           S P D  +   + A +L        V+   +  K +      E+ L  +   +   G  +
Sbjct: 435 SLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 492

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D   +  L   + +E ++  ++I  L      + +    L   L+   GI+ VD ++ T 
Sbjct: 493 DSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 551

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
             +L            IL   A+       +  L + +++   R+  T    G + TGR 
Sbjct: 552 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 610

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379
           S      QN+P                                +R            + A
Sbjct: 611 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 646

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D + IE R LA ++ ++   +AF +GEDI+  T ++ FN P+++V+K+QR   K +   L
Sbjct: 647 DYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGL 706

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            Y       +       L +          + F  +  A        +Q  +      ++
Sbjct: 707 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 761

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G        +      G            A       +++ R   +   L+         
Sbjct: 762 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 797

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                  +L   ++  +       +                             +     
Sbjct: 798 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 823

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                       ++ E P      + +L    M         +PL       K +
Sbjct: 824 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 865


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 89/664 (13%), Positives = 175/664 (26%), Gaps = 131/664 (19%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPS----DLLQYLRDETVMCVAHNSLFERILFK 81
           +     L A A  D         +  A+ +     L  +L D       H + +      
Sbjct: 350 DGGRAWLIAVASPDGSGAAI---KTEALTAHDTAALGAWLADPAAPKAFHEAKWAAHAL- 405

Query: 82  KTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKG 138
           +  G  I         + A           L +  +       L   + G+  ++     
Sbjct: 406 RGQGFSIAGVT-TDIGLAAYIARPGQRSFQLPDLAVRY-LRRQLGPDDSGQKQLSLLDAE 463

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
             D+   +   +      +        D    +     L+     E  L  +   + + G
Sbjct: 464 QDDNAEANGAVSEAAAIRE---LGEALDDVLAKAGSADLLHT--MELPLTFVLGAMEEAG 518

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-- 256
             +D D +  L    +   ++  E    +    I +      L++ LF   G+       
Sbjct: 519 IAVDQDALAGLHADFSARVQQAAESAYAVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTK 577

Query: 257 -----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
                    L+ +   +    L+   +L    ++         L +AV  DGR+  T + 
Sbjct: 578 TGHTTDADALQWLFERTEHPFLSH--LLEHRDATRLMTT-AQGLIKAVGPDGRIHTTFRQ 634

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             A  TGR S      QN+P                             +  +R   +  
Sbjct: 635 DVA-ATGRLSSTDPNLQNIP------------------------VRTEEARRIRGVFVVG 669

Query: 372 NGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            G + L+ AD + IE R++A ++G++  I+AF  GED++    ++AF  PID+V  E R 
Sbjct: 670 EGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVGAELRR 729

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K M   L Y               L +       +  + F  +     +   + ++  
Sbjct: 730 RVKAMSYGLAYG-----LSAFGLAQQLGVSGEEAKAQMEAYFARFGGVRDYLREVVEEAR 784

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                + L G          R     +    +                 +          
Sbjct: 785 RKGYTETLFGR---------RRYLPDLTSDNQQQRAVAERAALNAPIQGSAADII----- 830

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                           ++    V    +  N  +                          
Sbjct: 831 ----------------KVAMIHVAEALAARNMRSR------------------------- 849

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669
              +         +VL        E  +     +  L    M         +P+      
Sbjct: 850 --MLLQVHDE---LVL--------EVAEGEQDELAALVAEQMGSAIE--LSVPMDVSVGF 894

Query: 670 AKRY 673
              +
Sbjct: 895 GPNW 898


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 87/615 (14%), Positives = 167/615 (27%), Gaps = 132/615 (21%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L       + 
Sbjct: 397 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EE 450

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +             + A +   EY          LF       + E 
Sbjct: 451 WILHEKIKDF--KTKSKAEKSEQLDRELNALKRLCEYF-EKGGLEEGLFALAR---EVET 504

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               +   +  +G++ID     +L++    E   L+  I++L      +      L   L
Sbjct: 505 PFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEIL 563

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           +    +   + S  T +  L        +  LIL     +         L      D ++
Sbjct: 564 YEKLELP-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 622

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T    G + TGR S      QN+P                                +R
Sbjct: 623 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 657

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              IAS     L+  D + IE R+LA  + +   + AF  G DI++ T    F    + +
Sbjct: 658 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDL 714

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +                    G+                           
Sbjct: 715 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 735

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 + +    +     +   +A+  +   +      + E      +    +   RV 
Sbjct: 736 -----KKLSETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 790

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +            +                                          I Q 
Sbjct: 791 DFTGANDYIKGNYLREG------------------------------------VNAIFQG 814

Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658
            + D+L  GM   ++         ++L VHDE++ E  +     +   +  ++     + 
Sbjct: 815 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YP 873

Query: 659 KGLPLKAEGYEAKRY 673
             +PL+   + AKR+
Sbjct: 874 LRVPLETSAFIAKRW 888


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 119/426 (27%), Gaps = 117/426 (27%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314
            +E  L  +            +++   + S       + L E ++   GR+  +     A
Sbjct: 1   TAEAVLAELAEQ---DFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 57

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR S      QN+P                                +R   +A  G 
Sbjct: 58  -VTGRLSSSDPNLQNIP------------------------IRTAEGRRIRQAFVAPKGY 92

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
           KL+ AD + IE R++A +A ++  + AF N  D++  T A+ F   ++ V+ + R   K 
Sbjct: 93  KLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKA 152

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +                    G+                                   A 
Sbjct: 153 INF--------------GLIYGMS------------------------------AFGLAK 168

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
           +  +     +     + A++ GVL   +      A                         
Sbjct: 169 QIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAEQG---------------------- 206

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                +     RRL   D+      L        R            +Q  + DI+ + M
Sbjct: 207 ----FVETIFGRRLYLPDINAKNQSLR---KGAERMAINAP------MQGTAADIIKKAM 253

Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEG 667
                          ++L VHDE+V E  +     +   +   M+     A  +PL  E 
Sbjct: 254 VAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAAELA--VPLLVEV 311

Query: 668 YEAKRY 673
                +
Sbjct: 312 GVGNNW 317


>gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda
           melanoleuca]
          Length = 1040

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/618 (13%), Positives = 155/618 (25%), Gaps = 132/618 (21%)

Query: 65  TVMCVAHNSL-FERILFKK--TLGIDIPSKRWI--CTSVLARTNGLP---SSLKNACLAL 116
               +  N+  F R + +     G       ++     + A          S ++     
Sbjct: 306 KCPVICFNAKDFVRTVLQFFGHDGSWKHVVHFVGLDPRIAAWLIDPGDAAPSFEDLVAKY 365

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             S    K+       +R                  +        Y    +  T EL   
Sbjct: 366 LESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLWQLFCTLEL--- 422

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                     L  +   +     ++D + + +   L+    K+L+++      G      
Sbjct: 423 ---------PLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAH-FVAGEQFLIT 472

Query: 237 QTYALRMYLFLITGIDL-------VDMS----EGTLKSILSHSNITQLAKDLILNRLASS 285
               LR  LF    + L                 T +++L           +IL      
Sbjct: 473 SNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVH 532

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
            +    ++ L  A    G +  T    G + TGR S      Q + +             
Sbjct: 533 KTKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQNFKG 590

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                 TI+          RS  +A  G   + AD + IE R+LA ++G+   +K F   
Sbjct: 591 VEGAMLTISP---------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 641

Query: 406 EDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
           E    + T  ++    P + V+   R   K +  +  Y  G +                 
Sbjct: 642 ERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAAC------------ 689

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             +         +++  K++ V    + 
Sbjct: 690 --------------------------------LGVTVQEAAWFLESFLQKYKKVKDFVQT 717

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                         +                           RR     V+         
Sbjct: 718 TIAQCHQTGYVASIM--------------------------GRRRPLPRVRAQDQ---QL 748

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSET 636
            +Q  R+          +VQ  + D+    M                +V  +HDE++ E 
Sbjct: 749 RAQAERQA------VNFVVQGSAADLCKMAMIRVFAAVAASPTLTARLVAQIHDELLFEV 802

Query: 637 PDTPYFSVGTLCS-LMTK 653
            D+    +  L    M  
Sbjct: 803 DDSQIPELAALVRGTMES 820


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/697 (14%), Positives = 186/697 (26%), Gaps = 158/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQY 60
            L++D E      + K           I L     D+E   + D        + + +   
Sbjct: 24  YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 77

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLA 115
           + ++ +  + HN  F+    K    ++I  K    T + ++           SL  +   
Sbjct: 78  IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDSNQRHSLSASAKR 133

Query: 116 ---LNFSEHLTKM-----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
              L+  +   K      +     I    K             N +    L  +      
Sbjct: 134 FVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQLNQDNLHKKASGE-- 191

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T ++F  + P++  E         I   G  ID +   KL   + Q+  +   D +K 
Sbjct: 192 --TFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKL---LKQKESEFQSDYMKF 246

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                        +  YL     I L    +    +    L      +  + L+  R   
Sbjct: 247 KIKTGADPFSPQQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR--- 303

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +   I+         + + R+ G  +  GA  TGR S      QN+P+            
Sbjct: 304 ADKKIIDKIKEILQFTRNERVYGEFKQIGA-ATGRMSSLRPNLQNIPKN----------- 351

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              ++       G K +VAD + IE R+ A    ++  I AF  
Sbjct: 352 -------------------LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNE 392

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G+D++  T +       D+++KE+R + K +   L Y    K     A            
Sbjct: 393 GKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLVEYAKAN--------- 443

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +     +   + +   ++        +
Sbjct: 444 -----------------------------YGVSISLQEAKKFHENYFKFYKSFKDWHDKV 474

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E                             R + +     R+L                
Sbjct: 475 KEHLDK------------------------HRSIELETLLGRKL---------------- 494

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP 640
                            +Q    D+L   +             +V  VHDEI+ E     
Sbjct: 495 -----IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAAKD 549

Query: 641 YFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRYRK 675
                 +  S M K        +P+  E   +  + K
Sbjct: 550 IEKAKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWNK 586


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/542 (15%), Positives = 153/542 (28%), Gaps = 125/542 (23%)

Query: 149 RANHVQAWQLFGEYCKRDVE--ATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDL 205
           +       + F E   +  E    R     L  L +  E  +  +   +   G  ++   
Sbjct: 352 KFTDKDTLESFFEKILQKKEFILDRMDKYNLWELYNKVEHKIIHILSEMEQTGILLNSKQ 411

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLK 262
           + +  E I +     ++  +    G   +      L   LF    +           T +
Sbjct: 412 LKETDEKIKELLNN-EKKAIDEMLGEEINLNSPKQLSFVLFEKLKMVPFKKNKTGYSTDE 470

Query: 263 SILSHS----NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRT 317
             L +        +     IL     S       + LS+ +  S GR+    +  G + T
Sbjct: 471 DSLRNMIFLNPSYENLLKSILKYREFSKLISTYTSKLSDYIDRSTGRIHTQFKQTG-TAT 529

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QN+P+                         G     +RS  ++  G   +
Sbjct: 530 GRLSSVNPNLQNIPQ------------------------KGELGSEIRSAFVSKEGYSFL 565

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + IE R+LA I+ ++    AF    DI+  T  K F     +++++ R I K +  
Sbjct: 566 SIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAVNF 625

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             GL     S                                  
Sbjct: 626 --------------GIIYGLSPYGLS------------------------------RDVG 641

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +  +  ++  K +   +  V +  K++ +           ++                  
Sbjct: 642 IPQSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTTILN------------------ 683

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                   R     D+K      NT   +  R          + +Q  + DI+   M  +
Sbjct: 684 --------RPRFIPDIKSAN---NTIKQRAERIAI------NSPIQGSAADIIKLAMIKS 726

Query: 618 TK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEA 670
            K          ++L VHDE+V E  D         +  +M         +PLK     +
Sbjct: 727 DKYLKRMQIDGKLILQVHDELVFEINDKYIDKTSKDIKVIMENIYP--LKVPLKVNLGIS 784

Query: 671 KR 672
           K 
Sbjct: 785 KN 786


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/566 (14%), Positives = 158/566 (27%), Gaps = 133/566 (23%)

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                   +  +EG A I +  K                +A  LF  Y K   E    L 
Sbjct: 398 YYLLHPDKSSSKEGLAEIKKMLKS---------EEGLDKEALSLFDLYGKISSEMDEALH 448

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
             +  +   +  L ++   +  +G R+DLD + K+++ + +    +   I  +  G   +
Sbjct: 449 GLMYRI---DIPLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASI-DMAAGYKVN 504

Query: 235 SRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGS 287
                 +   LF   G+ ++  ++         L+ +        L   L+L+    +  
Sbjct: 505 LNSPKQVGWLLFDHLGLPVIKKTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHRELTKM 564

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               +  L +A+        T   + ++ TGR S      QNLP                
Sbjct: 565 LTGFVQPLIDAIDPKTGKVHTTFEHTSTGTGRLSSRDPNLQNLP---------------- 608

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                     G  +  ++   +        + AD + IE RVLA I+G+    +AF  G 
Sbjct: 609 --------AYGDWAMKLKEAFVPDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGR 660

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI+  T A  F    +KVS E R +                        G+     +   
Sbjct: 661 DIHAETAAWIFGVDTEKVSPELRRMA--------------KMINFGLLYGMTPYGLASR- 705

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                          +     + +   + +    V    +   E
Sbjct: 706 -----------------------------LNIGREEAKTIIDRYFSAFPKVGDYIEKSYE 736

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                         RR  N                                + +  +T+ 
Sbjct: 737 EARKRGYTLSLFGRRRPLNEVT-----------------------------TVVGNSTAA 767

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
           L R            +Q+ + DI    M    +          ++L +HD ++ E     
Sbjct: 768 LKRVAI------NTPIQSTAADITKIAMIRLDEALQRENIDAALILQIHDSLICECSAKD 821

Query: 641 YFSVGTL-CSLMTKNPSWAKGLPLKA 665
              V  +    M         +PL+ 
Sbjct: 822 EEVVSGILKESMESAVE--LSVPLEV 845


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/550 (12%), Positives = 136/550 (24%), Gaps = 112/550 (20%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
                 +      +        A  L   Y         +    L      E  L  +  
Sbjct: 416 TYLPSVNAAEAAREGALGAAWCAVLLEKIYPVLKERLEEQQLLSLYET--MEFPLVEVLA 473

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +D   + +    I+ +   L  +I  L  G   +      L   LF    + 
Sbjct: 474 AMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEF-NINSPKQLSAVLFERLDLQ 532

Query: 253 LV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRL 305
                        T   +L          + IL+    +      L+++   +S    R+
Sbjct: 533 PPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFWTKLQSTYLDSMEGLISPRTKRI 592

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 593 HTSFNQTV-TATGRLSSSEPNLQNIP------------------------VRTEEGRQIR 627

Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +    S+G   L+ AD + IE R+LA ++ +   ++AF +G+DI+  T ++ F  P++ V
Sbjct: 628 ALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAV 687

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           + + R   K +   + Y               L + +        S F      +     
Sbjct: 688 TTDLRRKAKAVNFGIVYG-----ISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDG 742

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
           + ++  +      + G   +L           +     +       +        +    
Sbjct: 743 VVEKAHKDGFVTTIFGRRRDL---------PAIKSSNYNQRTLAERMAMNTPIQGSAADI 793

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                 +L               +                    
Sbjct: 794 I---------------------KLAMIKTHRALQEGGFKSRI------------------ 814

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
                    +         +VL        E        V  L    M         +PL
Sbjct: 815 ---------LLQVHDE---LVL--------EIMQNEKEQVAELVRDAMENIVQ--LSVPL 852

Query: 664 KAEGYEAKRY 673
             + +  + +
Sbjct: 853 SVDIHTGENW 862


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/550 (12%), Positives = 136/550 (24%), Gaps = 112/550 (20%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
                 +      +        A  L   Y         +    L      E  L  +  
Sbjct: 417 TYLPSVNAAEAAREGALGAAWCAVLLEKIYPVLKERLEEQQLLSLYET--MEFPLVEVLA 474

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G  +D   + +    I+ +   L  +I  L  G   +      L   LF    + 
Sbjct: 475 AMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEF-NINSPKQLSAVLFERLDLQ 533

Query: 253 LV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRL 305
                        T   +L          + IL+    +      L+++   +S    R+
Sbjct: 534 PPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFWTKLQSTYLDSMEGLISPRTKRI 593

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             +      + TGR S      QN+P                                +R
Sbjct: 594 HTSFNQTV-TATGRLSSSEPNLQNIP------------------------VRTEEGRQIR 628

Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +    S+G   L+ AD + IE R+LA ++ +   ++AF +G+DI+  T ++ F  P++ V
Sbjct: 629 ALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAV 688

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           + + R   K +   + Y               L + +        S F      +     
Sbjct: 689 TTDLRRKAKAVNFGIVYG-----ISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDG 743

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
           + ++  +      + G   +L           +     +       +        +    
Sbjct: 744 VVEKAHKDGFVTTIFGRRRDL---------PAIKSSNYNQRTLAERMAMNTPIQGSAADI 794

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                 +L               +                    
Sbjct: 795 I---------------------KLAMIKTHRALQEGGFKSRI------------------ 815

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
                    +         +VL        E        V  L    M         +PL
Sbjct: 816 ---------LLQVHDE---LVL--------EIMQNEKEQVAELVRDAMENIVQ--LSVPL 853

Query: 664 KAEGYEAKRY 673
             + +  + +
Sbjct: 854 SVDIHTGENW 863


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84
           +   A++  D+       T++  +  D     +L   ++        ++     +  +  
Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G+D+ +  +                      L  +    ++    +L  +      ++  
Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428

Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195
               +    +     +         VE    L ++L          D E+ L  +   + 
Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252
             G  +  + +L++Q       +KL ++I +L      +      L + LF   G+    
Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547

Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T   +L            IL+    +      +  L + + +DG++     
Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               ++TGR S      QN+P                                +R   + 
Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642

Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428
                 L+ +D + IE RVLA I+ ++  IKAF  G DI+ +T  + F     D V+   
Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   K +   + Y               L + +        + FE +   +++   +  +
Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
             +    + L     EL           +     ++               +        
Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAEATAINSPIQGSAADI---- 804

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                             ++    +          T                        
Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824

Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667
                +         IVL V        P +    +  L    M +       +PL A+ 
Sbjct: 825 ----MLLQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YEAKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 117/415 (28%), Gaps = 113/415 (27%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
              + +     +++     S       + L + V+S  GR+  +      + TGR S   
Sbjct: 2   EELSYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSD 60

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R   IA  G  +V AD + I
Sbjct: 61  PNLQNIP------------------------IRNEEGRRIRQAFIAREGYSIVAADYSQI 96

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R++A ++G+   I AF+ G+DI+ +T A+ F   +D+V+ EQR   K +         
Sbjct: 97  ELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF------- 149

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+                                   + +  +     +
Sbjct: 150 -------GLIYGMS------------------------------AFGLSRQLGISRPDAQ 172

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                +  ++  V Q   D+                                   +    
Sbjct: 173 KYMDLYFQRYPSVQQFMTDIRAKAKAQGY--------------------------VETLF 206

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RRL   D+    +          R            +Q  + DI+   M    +     
Sbjct: 207 GRRLYLPDINSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHD 257

Query: 621 -GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              ++++ VHDE+V E            +   M         +PL  E    K +
Sbjct: 258 PDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 310


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 198/370 (53%), Gaps = 9/370 (2%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
            ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+D
Sbjct: 62  QHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359
           GRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414
            S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y   YA
Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++          
Sbjct: 242 RAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGV 301

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
             +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q 
Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360

Query: 535 GGSISARRVA 544
            G     R  
Sbjct: 361 PGIAFKCRKL 370


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/665 (13%), Positives = 168/665 (25%), Gaps = 132/665 (19%)

Query: 19  VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI 78
           +G+    +         A            E  A  +   ++L  +    +  ++  +  
Sbjct: 347 LGLTVETQDGRPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-PKIMSDAKLQVK 404

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARF 135
             ++  G+++    +    V            +L          +               
Sbjct: 405 AMRRA-GLEVQGLAF-DVLVAGWLLRPGFTDKTLAALVSRYLMEDLPEPD---------- 452

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
              +    P        V+AW                    L  + D E    L+   + 
Sbjct: 453 ---ANQLVPETEALTAPVEAWYTLRVEHALREVLDER---TLGVMVDIEMPTLLVLVEME 506

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV- 254
            RG   D   + +L   + +    L +         I +      L+  LF   G+    
Sbjct: 507 LRGVATDRAGLAELSAQLQERITDLAQRAFAEIGKEI-NLGSPKQLQEVLFDQLGMPKTR 565

Query: 255 --DMSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                  T    L+           DL+L    +S      + TL   +  D R+  T  
Sbjct: 566 ANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLR-QIIQTLERGIGDDERIHTTYV 624

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +RS I  
Sbjct: 625 -QTGTTTGRISSNDPNLQNIP------------------------VRTEEGRRIRSAIRV 659

Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
             G   L+ AD + IE R++A ++G+   I+AFA GED++    ++ F      VS E R
Sbjct: 660 GEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPADVSAEMR 719

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K M   L Y               L +         T  F  +     +   + ++ 
Sbjct: 720 TKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGAVRDYLRQVVEEA 774

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                 + + G                +    + L +             +         
Sbjct: 775 RAAGYTETIFGRRRP---------FPDLNSPNRVLRDNAERAALNAPIQGSAADI----- 820

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
                            ++    ++ D                              RD+
Sbjct: 821 ----------------MKIAMIRIEADMRE---------------------------RDM 837

Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
               +              HDE++ E     + ++  +    M         +PL+ +  
Sbjct: 838 ASRMLLQV-----------HDELILEVAAGEWDALEAIVTDRMAHAAD--LRVPLEVQVG 884

Query: 669 EAKRY 673
               +
Sbjct: 885 RGDSW 889


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/773 (12%), Positives = 191/773 (24%), Gaps = 165/773 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E         V          +   +           + +    +W D  +    +
Sbjct: 285 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 340

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 341 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 397

Query: 107 SSLKNACLAL-----------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            SL+                    +   K   G   I +    +      +         
Sbjct: 398 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDG-SAGKIISMEPVEVLQRDD 456

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGER----------------DLWL----LDQTIN 195
            +++  Y   D  +T  L++ L    + +                 + W     L   + 
Sbjct: 457 REMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKME 516

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLFL--- 247
             G  +D   + +++++   +RK   +   K       D    +      +R   F    
Sbjct: 517 TAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIE 576

Query: 248 ---ITGIDLVDM--------------SEGT-----------LKSILSHS--NITQLAKDL 277
                G  L                  + T           ++ + +         +   
Sbjct: 577 NRCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLKTDLFTASGWPSVSG 636

Query: 278 ILNRLASSGS-----AILKLNTLSEAVSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLP 331
              R  +                 ++  S+             +    + G     +   
Sbjct: 637 DALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACH 696

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDC--VRSCIIASNGKKLVVADLAGIEARVL 389
                 EI +      N    + +   L  D   +R   +A+ G  L+VAD   +E R+L
Sbjct: 697 AIAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRIL 756

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A +A     + AF  G D +  T    +    D V +                   KV  
Sbjct: 757 AHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLL 798

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G +         +        +  +  +         A   K+     +   K 
Sbjct: 799 EWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKL 858

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           W    + VL       E      +    +                           R   
Sbjct: 859 WYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRSRR 892

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYD 623
           + ++    S          R            VQ  + D+    M    +       G+ 
Sbjct: 893 FPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWR 943

Query: 624 IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
           ++L VHDE++ E P        ++    M+K    +    + L  +   A+ +
Sbjct: 944 LLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 996


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 199/370 (53%), Gaps = 9/370 (2%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
            ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+D
Sbjct: 62  QHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359
           GRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414
            S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y   YA
Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++          
Sbjct: 242 RAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGV 301

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
             +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q 
Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360

Query: 535 GGSISARRVA 544
            G     R  
Sbjct: 361 PGIAFKCRKL 370


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 91/590 (15%), Positives = 159/590 (26%), Gaps = 127/590 (21%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK-GSIDSPPYDCTRANH 152
             T++                              K L     +   +D  P +      
Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQR-------HLQKQLPQSDGQLSLLDDSPSEPLLIEA 462

Query: 153 VQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +   +L         +    EL+  L      E  L  +   + D G  +D   + +  +
Sbjct: 463 MAVLELVPRLTDELSDIESLELYTDL------EIPLITILAAMEDTGIAVDTHTLEEQLD 516

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SIL 265
                  + +E    L      +      L++ LF    +     ++    T       L
Sbjct: 517 GFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEAL 576

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +        + L+ +R  S   +   L  L  +V  DGR+  T +   AS TGR S    
Sbjct: 577 AKKTDHPFLQHLLAHREYSKMKST--LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDP 633

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384
             QN+P                            A   +RS  +   G   L+ AD + I
Sbjct: 634 NLQNIP------------------------VRTDAGKKIRSAFVVGEGFETLLTADYSQI 669

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RV+A ++ +   I+A+ +GED++    +K F+  ID+V+ E R   K M   L Y   
Sbjct: 670 EMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYG-- 727

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +      LD+ Q        S FE +   +++   + D+  +      L G    
Sbjct: 728 ---LSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGR--- 781

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R     +    +   E                      +V              
Sbjct: 782 ------RRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVN----------- 824

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
            RRL     +                                       +         +
Sbjct: 825 -RRLDSLKSRV--------------------------------------LLQVHDE---L 842

Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           VL        E        V  +    M    S    +PL+        +
Sbjct: 843 VL--------EVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/686 (13%), Positives = 179/686 (26%), Gaps = 143/686 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58
           D E  S   L    +     +  I     + +       D   ++   S           
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTN 377

Query: 59  ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +    ++      L K      + S       V   +      + +   
Sbjct: 378 SLFEEFLNNPNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-VSDLSS 436

Query: 115 ALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +                GK +             Y   +A       L  +Y  + +E 
Sbjct: 437 QIKLVDNLVELETIDEIFGKGVKKNPDIDLDIKSKYISKKAY------LLKKYSDQLIE- 489

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +           +  L  +   I  +G  ID + +    + I ++   ++  +  L  
Sbjct: 490 QLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             I ++        ++  LF    +  ++    T K +L          +L+L     + 
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHRKYTK 608

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L    + +  D ++      +  + TGR S      QN+                
Sbjct: 609 LYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI---------------- 651

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            VR   I +N K  +  D + IE RVLA ++ E   I AF    
Sbjct: 652 --------SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNA 703

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI++      FN   D+++ EQR I KV                     GL         
Sbjct: 704 DIHLQAAKLIFNLSDDQITSEQRRIAKVF--------------NFGILYGLTDF------ 743

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                     A    +     + + K + +    +L   +   E
Sbjct: 744 ------------------------GLASDLNISVNQAKQMIKDYYSAFPSLLDFKEKQVE 779

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            I   S+RR   +++      +     +
Sbjct: 780 IATSQGY--------------------------ITTLSNRRRYINELNSTNHNIRQFGKR 813

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DIL   M +  K          IV  +HDEI+ E  D  
Sbjct: 814 I---------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQ 864

Query: 641 YFSVGTL-CSLMTKNPS-WAKGLPLK 664
                 +    +          L LK
Sbjct: 865 LEQTKKIVVHELENALEKLFLDLNLK 890


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 84/653 (12%), Positives = 173/653 (26%), Gaps = 144/653 (22%)

Query: 53  MPSDLLQYLRD-------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           +P +L   + +              +++   R       G ++         +L      
Sbjct: 389 VPDELTPQMENLLCNALAGDRKKTVYDAKSLRHALHAH-GWEMHG-AVTDIKMLDYLVNP 446

Query: 106 PSSLKNAC----LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
             +           L +       +  K    +       +D           +    ++
Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506

Query: 160 GEYCKRDVEATRELFKRLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
             Y    ++ T E       +    + E  L  + + +   G  ID   + +  + +  E
Sbjct: 507 A-YALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSE 565

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSN 269
                +         + +      L+  LF    +                L+ +  ++ 
Sbjct: 566 VAMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNP 624

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
              L + L+ +R       I  +  L E V+ DGR+  T     A  TGR S      QN
Sbjct: 625 HPFL-EALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVA-ATGRLSSIDPNLQN 680

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARV 388
           +P                           +    +R   +       L+ AD + IE R+
Sbjct: 681 IP------------------------ARTVDGQKIREAFVPQKPYTALMTADYSQIEMRI 716

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++G++  + AFA+GED++ +  A  +    D+V+  QR+  K     L         
Sbjct: 717 MAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGL--------- 767

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  GL     +                                  +     + +  
Sbjct: 768 -----AYGLSAYGLAAQ------------------------------LNISQRDAKQLMD 792

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            +  +   V +    +      V                                  RR 
Sbjct: 793 TYFERFGKVREYLNQIVATATRVGYTETMQ--------------------------GRRR 826

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGY 622
              +++     +     +               +Q  + D++   M              
Sbjct: 827 YLPELRSTNRNVADNARRA---------ALNAPIQGSAADLMKAAMLQVDADLRQEQLQS 877

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674
            ++L VHDE+V E        +  L    MT        +PL+        +R
Sbjct: 878 RVLLQVHDELVLEVAPGETERLEALVRQAMTGVAK--LRVPLEVSVGIGPNWR 928


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 17/284 (5%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
           M  + IDIET S   + K G + Y  AE   I + AY+ D   +   D T+    P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
                  L D  V   A N+ FER    K     +P + WICT V +   GLP+SL    
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169
             L       K + GK LI  F   CK +  +         + ++ WQ F +YC RDVE 
Sbjct: 121 EVLRL--QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178

Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  ++   P++  E+  W+ DQ INDRG ++   L+L    L  Q +++L +    +
Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
           T     +      L  +L    G+D+ ++ + T++  L  +   
Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK 280


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 71/520 (13%), Positives = 144/520 (27%), Gaps = 122/520 (23%)

Query: 161 EYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +   +      L+  + PL  D +  L  +   +  RG  +D   +  L   +    ++
Sbjct: 419 PFALLETLCEEPLWPSVAPLVRDLDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRE 478

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQ 272
           L+  +       + + +    +   LF   G+  +  ++         L+ +    +   
Sbjct: 479 LEALVRAEAGEEV-NLQSPKQMAALLFERLGLPPLKKTKTGFSTDVGVLEELAKLPDPLS 537

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
                +L     +      +    +    DG    +     A+ TGR S      QNLP 
Sbjct: 538 RVPRHLLEHREVAKLRTGFVQPFLKQAHRDGGHIYSTFEQTATGTGRLSSRDPNVQNLP- 596

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391
                                    G  ++  R C++  S   + + AD + IE RVLA 
Sbjct: 597 -----------------------VFGEWAEAFRRCLVPTSPKDRFLSADYSQIELRVLAH 633

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           + GE   ++AF  G DI+  T +  +    ++VS EQ                       
Sbjct: 634 LCGEPRLVQAFEAGRDIHRETASWVYGVAAEEVSAEQ----------------------- 670

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                  + +  +  L         A +  +       +   + 
Sbjct: 671 ---------------------RRFAKVVNFGLLYGMSAHGLAQRMGVGRPEAAQIIDRYF 709

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           +    V +  ++                  R       V  R    +             
Sbjct: 710 SVLPRVREYLEETVREAKARGYTVSLFGRVRPLGEVSTVEGRGGGALD------------ 757

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625
                                       + +Q+ + DI    M +  +          +V
Sbjct: 758 -----------------------RVAVNSPIQSTAADIAKVAMVDLERRLRGSGLPVRLV 794

Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664
           L VHD +V + P        +L   +M +  +    +PL+
Sbjct: 795 LQVHDSLVCQVPQEALEEAASLLRDVMERAVT--LSVPLE 832


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/590 (15%), Positives = 159/590 (26%), Gaps = 127/590 (21%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK-GSIDSPPYDCTRANH 152
             T++                              K L     +   +D  P +      
Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQR-------HLQKQLPQSDGQLSLLDDSPSEPLLIEA 462

Query: 153 VQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +   +L         +    EL+  L      E  L  +   + D G  +D   + +  +
Sbjct: 463 MAVLELVPRLTDELSDIESLELYTDL------EIPLITILAAMEDTGIAVDTHTLEEQLD 516

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SIL 265
                  + +E    L      +      L++ LF    +     ++    T       L
Sbjct: 517 GFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEAL 576

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           +        + L+ +R  S   +   L  L  +V  DGR+  T +   AS TGR S    
Sbjct: 577 AKKTDHPFLQHLLAHREYSKMKST--LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDP 633

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384
             QN+P                            A   +RS  +   G   L+ AD + I
Sbjct: 634 NLQNIP------------------------VRTDAGKKIRSAFVVGEGFETLLTADYSQI 669

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RV+A ++ +   I+A+ +GED++    +K F+  ID+V+ E R   K M   L Y   
Sbjct: 670 EMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYG-- 727

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +      LD+ Q        S FE +   +++   + D+  +      L G    
Sbjct: 728 ---LSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGR--- 781

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 R     +    +   E                      +V              
Sbjct: 782 ------RRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVN----------- 824

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624
            RRL     +                                       +         +
Sbjct: 825 -RRLDSLKSRV--------------------------------------LLQVHDE---L 842

Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           VL        E        V  +    M    S    +PL+        +
Sbjct: 843 VL--------EVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 198/370 (53%), Gaps = 9/370 (2%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +LW LDQ IN RG  +D++L       +  E+ +L     +LTD  ++++ Q  AL 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
            ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+D
Sbjct: 62  QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359
           GRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414
            S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y   YA
Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AFN   + V+KEQR IGKVMEL LGY GG   F T A   GLDL + ++          
Sbjct: 242 RAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGV 301

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
             +A   +    +    + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q 
Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360

Query: 535 GGSISARRVA 544
            G     R  
Sbjct: 361 PGIAFKCRKL 370


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 202/370 (54%), Gaps = 9/370 (2%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
            ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+D
Sbjct: 62  QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359
           GRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414
            S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+  ++      Y   YA
Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYA 241

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++          
Sbjct: 242 RAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGV 301

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
             +A S +    ++   + + +K+  T C+ +K+ WR  H   +  W D+ +     +Q 
Sbjct: 302 KREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360

Query: 535 GGSISARRVA 544
            G     R  
Sbjct: 361 PGIAFKCRKL 370


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 113/678 (16%), Positives = 192/678 (28%), Gaps = 163/678 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D+ET         G+  + ++  +   +    +    L D          L      
Sbjct: 150 LGLDLETT--------GLDPHQDRPRLLSLS---TERDTYLVDLFALPHALEALRPLFEA 198

Query: 64  ETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +T    V HN  F+     K  G+    +R  CT +  +     S +             
Sbjct: 199 KTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMPALA--------- 248

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   L  R        P  +   A   +  Q+      +  E +R L   +  + +
Sbjct: 249 --DLV-PGLDKRLQTSDWSGPISEAQLAYAARDTQVLLPLYHQQQEESRRLG--IGKVLE 303

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E         +   G   + +  L   +      ++  + +         +      + 
Sbjct: 304 IESRALPAVAWMGLMGVPFNPERWLATAKEAELSAQEALKRLDWR-----TNWDSPKQVL 358

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             L    GI+L D  E T    LS          L+  R      +      L       
Sbjct: 359 EALR-RAGIELSDTREET----LSRHREHPTVAALLAYREHRKRQSTYGAAWLENLHPLT 413

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+  + Q  GA   GR S      Q +PR+                             
Sbjct: 414 GRIHPSWQQIGAES-GRMSCSRPNLQQVPREPAY-------------------------- 446

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R+C  A  G+ L+ AD + IE R+ A IAGE   ++AF  GED++  T          
Sbjct: 447 --RACFQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTLTARLVTGKA-- 502

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           + S+E R + K +   L Y  G++  +T A                              
Sbjct: 503 EPSREDRQLAKALNFGLLYGMGSEGLRTYARAN--------------------------- 535

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                         +L     E +++A+   + G+    +                    
Sbjct: 536 -----------YGLELSPQEAEALREAFFRAYPGLRAWHR-------------------- 564

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                     + + +V +   + RR V                       Y  KL    V
Sbjct: 565 ---------HQPEGEVEVRTLAGRRRVTGR--------------------YTEKL-NTPV 594

Query: 603 QAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656
           Q    D L   +    ++     G   VL VHDEIV E P     +    L   M +   
Sbjct: 595 QGSGADGLKLTLALLYESRQKAPGCFPVLAVHDEIVIEAPADGVSAAYAWLTRSMREGME 654

Query: 657 WAK-GLPLKAEGYEAKRY 673
                +P+  E    + +
Sbjct: 655 AILTKVPVLVEVGVCEDW 672


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/693 (14%), Positives = 188/693 (27%), Gaps = 163/693 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L++D ET                   I L     D+E   + D  E   +   L + + 
Sbjct: 24  YLYLDTETTGD---------------RIRLVQIG-DEENTYVIDLYEIQDI-EPLRKLIN 66

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSE 120
           +  +  V HN  F+     +     I       T + +   G    SL +     L +S 
Sbjct: 67  ERGI--VGHNLKFDLKYLYRY---GIFPSATFDTMIASYLLGYERHSLNHIVSNLLGYSM 121

Query: 121 HLT-------KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             +             A +       I          + +                T ++
Sbjct: 122 DKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTR-TAKI 180

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           F    P++  E         +   G+ +D++ +    + + +E     + I +       
Sbjct: 181 FDLKSPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERET---QKRIQEFYIKYRV 237

Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
                  L   L     ++L    +    T    L+     +  K ++  R         
Sbjct: 238 DPLSPKQLASLLTKKFKLNLPKTPKGNVSTDDKALTSYQDVEPVKLVLEIRKL--KKIAD 295

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           KL  L E +  +GR+    +  GA  TGR S      QN+ R                  
Sbjct: 296 KLKELKEHL-KNGRVYPEFKQIGA-VTGRMSSAHPNIQNIHRD----------------- 336

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R    A  G   V++D + IE R+ A    +   + AF  G+D++ 
Sbjct: 337 -------------MRGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMHR 383

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T +       ++++KE+R + K +   L Y   AK     A                  
Sbjct: 384 YTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAEYA------------------ 425

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                               +     ++     +++++ +    +   +    + +    
Sbjct: 426 --------------------KLGYGVEISLEEAQVLRERFFKNFKAFKEWHDRVKKELKE 465

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
             +  G     R  +                                             
Sbjct: 466 KGEVKGHTLLGRRFSANTFND--------------------------------------- 486

Query: 591 RTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSV 644
                      +Q    D+L   +     N  K G    +V  VHDEIV E        V
Sbjct: 487 ------AVNYPIQGTGADLLKLAVLLFDANLQKKGIDAKLVNLVHDEIVVECEKEKAEEV 540

Query: 645 GTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYRK 675
             +    M          +P++ E    +R+ K
Sbjct: 541 KEILEKSMKTAGKIILKEVPVEVESVINERWTK 573


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/660 (21%), Positives = 241/660 (36%), Gaps = 127/660 (19%)

Query: 5   FIDIETRSP---------------------QPLPKVGVWAYAEQA--VITLCAYAWDDEP 41
             D ET S                        +  VG   YAE     I    Y   D  
Sbjct: 36  SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95

Query: 42  V--KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER----ILFKKTLGID-IPSKRWI 94
                         P+DL++++ +      A N  FE     ++  K  G   +  ++  
Sbjct: 96  GRRAYIP---GGPKPTDLIEHIANGG-PIAAWNITFEFWIWNMVLAKREGWPWLQLEQCY 151

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY---DCTRAN 151
           C    AR   LP SL  A  AL       K ++GK LI + C+    +        T   
Sbjct: 152 CDMAKARRFSLPGSLDAAAQALK---TSPKDKKGKQLINKLCRPVSATKARPLPRWTLYT 208

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             Q +     YC +DV++   +      ++  ER+ WL DQ IN RG ++D++ +    +
Sbjct: 209 APQDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALD 268

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
           ++ Q  ++   ++  +T+G + S  +   +  +L    G  + +++  ++   L   ++ 
Sbjct: 269 IVDQTTRRFTMELAAITNGAVGSVSEVAKMTDFLAG-LGCRMHNLTADSVSEALERDDLN 327

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
             A+ ++  R A +G+ + KL +L   +SSDGRLR    F+GA  TGRWS    Q QNL 
Sbjct: 328 PTARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLT 386

Query: 332 RQERSEEILTQTIQALNRGETI-------------------------------------- 353
            +    +      + + +  TI                                      
Sbjct: 387 SKGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHR 446

Query: 354 ---------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                     DP+ L S C+R   IA+ GKK V  D + IEA VLA +A  +W+++ F  
Sbjct: 447 NLDLIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRT 506

Query: 405 GEDIYVTTYAKAFNTPID----------KVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
              IY  + +K    P +               ++++GKV ELA GY G    +K   + 
Sbjct: 507 HGKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGA- 565

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                          + F D ++ +   L  +D  PE            +   + W  ++
Sbjct: 566 --------------EAHFADDDEMKKAILGWRDASPEIVEFWGGQYRR-DPFTRKWTKEY 610

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            G       L       +   G     +   V  +    H   ++  LPS R L Y   +
Sbjct: 611 FG-------LEGAAIMAILNPG-----KCYAVHDITYAVHDDVLYCRLPSGRFLQYHQPR 658


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/697 (14%), Positives = 185/697 (26%), Gaps = 158/697 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQY 60
            L++D E      + K           I L     D+E   + D        + + +   
Sbjct: 23  YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 76

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLA 115
           + ++ +  + HN  F+    K    ++I  K    T + ++           SL  +   
Sbjct: 77  IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDNSQRHSLSASAKR 132

Query: 116 ---LNFSEHLTKM-----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
              L+  +   K      +     I    K             N +    L  +      
Sbjct: 133 FVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQDNLHKKASGE-- 190

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T ++F  + P++  E         I   G  ID +   KL   + Q+  +   D +K 
Sbjct: 191 --TFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKL---LKQKELEFQADYMKF 245

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284
                        +  YL     I L    +    +    L      +  + L+  R   
Sbjct: 246 KIKTGADPFSPLQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR--- 302

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +   I+         + + R+ G  +  GA  TGR S      QN+P+            
Sbjct: 303 ADKKIIDKIKEILQFTRNKRVYGEFKQIGA-ATGRMSSLRPNLQNIPKN----------- 350

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              ++       G K +VAD + IE R+ A    ++  I AF  
Sbjct: 351 -------------------LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNE 391

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G+D++  T +       D+++KE+R + K +   L Y    K     A            
Sbjct: 392 GKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKAN--------- 442

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                            +     +   + +   ++        +
Sbjct: 443 -----------------------------YGVSINLQEAKKFHENYFKFYKSFKDWHDRV 473

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E                             R   +     R+L                
Sbjct: 474 KEHLDK------------------------HRFTTLETLLGRKL---------------- 493

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP 640
                            +Q    D+L   +             +V  VHDEI+ E     
Sbjct: 494 -----IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAAND 548

Query: 641 YFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRYRK 675
                 +  S M K        +P+  E   +  + K
Sbjct: 549 IEKAKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWSK 585


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/636 (13%), Positives = 168/636 (26%), Gaps = 139/636 (21%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
               +  N+  F RI+  +  G D   K           + A          S ++    
Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+       +R                  +       +Y    +  T EL  
Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                      L  +   +     +++ + + K   L+    K+L+++      G     
Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478

Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284
                LR  LF    +             + +   T +++L+          +IL     
Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++ L  A    G +  T    G + TGR S      Q + +            
Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
              ++  TI+          R+  ++S G   + AD + IE R+L  ++G+   +K F  
Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQE 647

Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            E    + T  ++  + P+++V+   R   K +  A+ Y  G +                
Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +         +++  K++ +     
Sbjct: 697 ---------------------------------LGVPIQEAAQFLESFLQKYKKIKDF-- 721

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                    + +                         +V    RR     +         
Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635
             +Q  R+          +VQ  + D+    M +              +V  +HDE++ E
Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808

Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665
             D        L    M      +       +PLK 
Sbjct: 809 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/636 (13%), Positives = 168/636 (26%), Gaps = 139/636 (21%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
               +  N+  F RI+  +  G D   K           + A          S ++    
Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+       +R                  +       +Y    +  T EL  
Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                      L  +   +     +++ + + K   L+    K+L+++      G     
Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478

Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284
                LR  LF    +             + +   T +++L+          +IL     
Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++ L  A    G +  T    G + TGR S      Q + +            
Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
              ++  TI+          R+  ++S G   + AD + IE R+L  ++G+   +K F  
Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQE 647

Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            E    + T  ++  + P+++V+   R   K +  A+ Y  G +                
Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +         +++  K++ +     
Sbjct: 697 ---------------------------------LGVPIQEAAQFLESFLQKYKKIKDF-- 721

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                    + +                         +V    RR     +         
Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635
             +Q  R+          +VQ  + D+    M +              +V  +HDE++ E
Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808

Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665
             D        L    M      +       +PLK 
Sbjct: 809 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 200/370 (54%), Gaps = 9/370 (2%)

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E +LW LDQ IN RG  +D++L       +  E+K+L     +LTD  ++++ Q  AL 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
            ++    GI L DM   TL+  ++  +I    ++L+  RL S  ++  K   L ++VS+D
Sbjct: 62  QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359
           GRLRGT QF GASRTGRW+G VFQP NLPR       +   I+AL  G       D + L
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414
            S  +R CIIA  GKKLV++DL+ IE R+LAW+AGE+WK+KAF+  ++      Y   YA
Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYA 241

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           +AFN   + V+K+QR IGKVMEL LGY GG   F T A   GLDL + ++          
Sbjct: 242 RAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGV 301

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
             +A S +    +    + + +K+    C+ +K+ WR  H   +  W D+ +     +Q 
Sbjct: 302 KREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360

Query: 535 GGSISARRVA 544
            G     R  
Sbjct: 361 PGIAFKCRKL 370


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 100/393 (25%), Gaps = 60/393 (15%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54
             D ET +  P+           A +   +++ +           +            + 
Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112
           + L  +L       V  +  ++  +     GI++       T + +          + + 
Sbjct: 396 ARLKPWLESADRRKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453

Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       +   GK                         A     EY   D + T 
Sbjct: 454 ALRHLGIKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498

Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +L + L P             + E  +  + + +   G  ID  L+      IA    +L
Sbjct: 499 QLHRALYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEIATRLIEL 558

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276
           +    +L  G   +      +    F    +         +  T + +L           
Sbjct: 559 EAQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617

Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR--Q 333
           L+L     S       + +   V    GR+          R+   S    +     R   
Sbjct: 618 LLLEHRGLSKLKSTYTDKMPRMVIPATGRVHTNYAQAVR-RSRAASHRTIRIFRTFRCEP 676

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            ++     ++++    G         +    R+
Sbjct: 677 RKAGGSARRSLRRPATGSCRPTIRRSSCGSWRT 709


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/659 (13%), Positives = 173/659 (26%), Gaps = 124/659 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTLGI 86
             +T  A A  D        T  +      L     +       H +        +  G 
Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418

Query: 87  DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            +       T++ A          +L +  L     E   +                D+ 
Sbjct: 419 TLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEE---SGQQQLSLLDDEDAA 474

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
             +      +++  +       D E        L+   D E  L  +   +   G  +D 
Sbjct: 475 DAEAAEGEILRSRAVLDLAAALDTELADIEATGLLA--DMELPLLEVLANLESTGIAVDT 532

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------- 256
             +  LQ   A    +   +      G   +      L++ LF    +            
Sbjct: 533 THLHDLQSAFAARVAE-AAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTT 591

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
               L+S+   +    L    +L    ++   +  ++ L + V+ DGR+  T     A  
Sbjct: 592 DADALQSLFEKTQHPFLEH--LLEHRDATRLKVT-VDGLLKTVAEDGRIHTTFNQTVA-A 647

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                            A   +R   +   G   
Sbjct: 648 TGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVVGEGYET 683

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G+   I+AF  GED++    ++AF  PI++V+ E R   K M
Sbjct: 684 LLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAM 743

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y               L +       +  + F  +     +   + +Q  +    
Sbjct: 744 SYGLAYG-----LSAFGLAAQLKISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYT 798

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           + L G          R     +    +   E                      ++  +  
Sbjct: 799 ETLFGR---------RRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMIDVQ-- 847

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     R L  +                                 ++       + 
Sbjct: 848 ----------RALREA--------------------------------GLAS----RMLL 861

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +VL        E        V  L    M         +PL+      + +
Sbjct: 862 QVHDE---LVL--------EVAAGERERVEQLVREKMAAAID--LSVPLEVSVGTGRSW 907


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/627 (13%), Positives = 168/627 (26%), Gaps = 139/627 (22%)

Query: 75  FERILFKKTL---GIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEE 127
           ++    +  L   G ++         +L        +           L +       + 
Sbjct: 414 YDAKSLRHALHAHGWELHG-AVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDI 472

Query: 128 GK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---SD 182
            K    +       +D           +    ++  Y    ++ T E       +    +
Sbjct: 473 SKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYA-YALLQMQPTLEQLAHFRQVDGLLE 531

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  + + +   G  ID   + +  + +  E     +         + +      L+
Sbjct: 532 LENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREV-NLSSPKQLQ 590

Query: 243 MYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295
             LF    +                L+ +  ++    L + L+ +R       I  +  L
Sbjct: 591 EVLFTQLELPKTKKTKTGYTTDAKALEELARYNPHPFL-EALLYHRDRIKLLQI--VRNL 647

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
            E V+ DGR+  T     A  TGR S      QN+P                        
Sbjct: 648 RERVADDGRIHTTFGQTVA-ATGRLSSIDPNLQNIP------------------------ 682

Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
              +    +R   +       L+ AD + IE R++A ++G++  + AFA+GED++ +  A
Sbjct: 683 ARTVDGQKIREAFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAA 742

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
             +    D+V+  QR+  K     L                GL     +           
Sbjct: 743 LVYGVQPDEVTPTQRSHVKATSYGL--------------AYGLSAYGLAAQ--------- 779

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                                  +     + +   +  +   V +    +      V   
Sbjct: 780 ---------------------LNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYT 818

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                          RR    +++     +     +        
Sbjct: 819 ETM--------------------------RGRRRYLPELRSTNRNVADNARRA------- 845

Query: 595 GKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                  +Q  + D++   M               ++L VHDE+V E        + TL 
Sbjct: 846 --ALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLETLV 903

Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRYR 674
              MT        +PL+        +R
Sbjct: 904 RQAMTGVAK--LRVPLEVSVGIGPNWR 928


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 98/679 (14%), Positives = 186/679 (27%), Gaps = 161/679 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D ET         G+  Y +     L  +        +           D+ + L 
Sbjct: 37  FLGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALE 87

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112
                 V HN+ ++  +F++TLG+ +     +   T +LA               SL++ 
Sbjct: 88  MVQ-GFVLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDL 146

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +  K L+A   K +  +      +         +  Y   D      
Sbjct: 147 TRRY---IDSAVADNVKTLMADLAKANKTTKVNVWKKVPFEDP--HYQLYSGMDPILAAR 201

Query: 173 LFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L ++L PL        + E  L  +   +   G+ +D++   +L   +  +    +E  +
Sbjct: 202 LIQKLAPLVKVSDELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIAL 261

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKSILSHSNITQLAKDL 277
                 +     T  +   L    G+ +   +           L  ++ H    + A  +
Sbjct: 262 NYGCEKV---NSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAV 317

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           I     +       ++   +   S  R    +    A RT R S      Q LP  +   
Sbjct: 318 IEA-KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD--- 372

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C +A  G ++   D    E RVLA ++ +  
Sbjct: 373 ------------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQR 408

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +  D+++ T   AF   I K   E                              
Sbjct: 409 MIQAFLDDADLHLMTARAAFGEHIQKDDPE------------------------------ 438

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                            + +  +            A +  L     + V   +   +  V
Sbjct: 439 ---------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEV 483

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +L + L                                   I     RRL     +   
Sbjct: 484 QKLSQRLQREAIRNGYITTP---------------------FIDGLGGRRLPVDPQR--- 519

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635
                                  ++Q+ SRD+ C  +      G+   + L +HDEI++ 
Sbjct: 520 ----------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILAS 563

Query: 636 TPDTPYFS-VGTLCSLMTK 653
            P          +  LM +
Sbjct: 564 VPAEQAEWGANRIGELMAE 582


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 181/664 (27%), Gaps = 133/664 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58
           D E  S   L    +     +  I     + +       D   ++   S           
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377

Query: 59  ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +    ++      L K      + S       V   +      + +   
Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-VSDLSN 436

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            +   ++L ++E        F KG   +P  D    +   + + +      D    +   
Sbjct: 437 QIKLVDNLIELETI---DQIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQ 493

Query: 175 KRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                     +  L  +   I  +G  ID + +    + I ++   ++  +  L    I 
Sbjct: 494 TNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEID 553

Query: 234 SS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           ++        ++  LF    +  ++    T K +L          +L+L     +     
Sbjct: 554 NNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHRKYTKLYTT 612

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L    + +  D ++      +  + TGR S      QN+                    
Sbjct: 613 YLKGFEKFIFDDSKVHTIFN-HTLTNTGRLSSSYPNIQNI-------------------- 651

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        VR   I +N K  +  D + IE RVLA ++ E   I AF    DI++
Sbjct: 652 ----SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
                 FN   D+++ EQR I KV                     GL             
Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVF--------------NFGILYGLTDF---------- 743

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A    +     + + K + +    +L+  +   E    
Sbjct: 744 --------------------GLASDLNISVNQAKQMIKDYYSAFPSLLEFKEKQVEIATS 783

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                        I   S+RR   +++      +     ++   
Sbjct: 784 QGY--------------------------ITTLSNRRRYINELNSTNHNIRQFGKRI--- 814

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DIL   M +  K          IV  +HDEI+ E  D      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868

Query: 645 GTLC 648
             + 
Sbjct: 869 KRIV 872


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
 gi|114592894|ref|XP_001147379.1| PREDICTED: polymerase (DNA directed) nu isoform 3 [Pan troglodytes]
          Length = 900

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/636 (13%), Positives = 169/636 (26%), Gaps = 139/636 (21%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
               +  N+  F RI+  +  G D   K           + A          S ++    
Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+       +R                  +       +Y    +  T EL  
Sbjct: 372 YCEKSLTVKVNSTYGNSSRNIVNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLEL-- 429

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                      L  +   +     +++ + + K   L+    K+L+++      G     
Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478

Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284
                LR  LF    +             + +   T +++L+          +IL     
Sbjct: 479 MSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++ L  A    G +  T    G + TGR S      Q + +            
Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
              ++  TI+          R+  ++S G   + AD + IE R+LA ++G+   +K F  
Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 647

Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            E    + T  ++  + P+++V+   R   K +  A+ Y  G +                
Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +         +++  K++ +     
Sbjct: 697 ---------------------------------LGVPVQEAAQFLESFLQKYKKIKDF-- 721

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                    + +                         +V    RR     +         
Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635
             +Q  R+          +VQ  + D+    M +              +V  +HDE++ E
Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808

Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665
             D        L    M      +       +PLK 
Sbjct: 809 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844


>gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515]
          Length = 316

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 108/416 (25%), Gaps = 113/416 (27%)

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              +      D IL            +  L +    +     T      ++TGR S    
Sbjct: 2   ESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDP 61

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384
             QN+P                                +R   +    G K+  AD + +
Sbjct: 62  NLQNIP------------------------IRLEEGRKIRQVFVPSKPGWKMFSADYSQV 97

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E RVLA I+ ++  I AF +  DI+  T    F+   ++V    R   K +         
Sbjct: 98  ELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF------- 150

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                      G+     SQN                                +     +
Sbjct: 151 -------GIVYGISDYGLSQN------------------------------LGITRKEAK 173

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                +   +  V +  +D+             +  RR            +         
Sbjct: 174 DFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-------- 225

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
                      + + +NT                   +Q  + DI+ + M          
Sbjct: 226 ---------FAERTAMNT------------------PIQGSAADIIKKAMILMSERLVSE 258

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 259 KLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 312


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/668 (13%), Positives = 181/668 (27%), Gaps = 141/668 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58
           D E  S   L    +     +  I     + +       D   +    S           
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKVQQLSFFEDTTLSSTD 377

Query: 59  ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L ++ +    ++      L K      +PS       V   +      + +   
Sbjct: 378 NLFEEFLNNKNLKKYTYDIKKTTYLLKNHQYNVLPSNFDFDFMVACYSLNANV-VSDLSN 436

Query: 115 ALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +            ++  GK +             Y   +A  ++ +       +     
Sbjct: 437 QIKLVNQQEEIETNEIIFGKGVKKNPDIDIDIKSKYISKKAYLLKKYSD-KLIEQLKQTN 495

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T +L+         +  L  +   I  +G  ID + +    E I ++   ++  +  +  
Sbjct: 496 TYDLY------LKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             I ++        ++  LF    +  ++    T K +L          +L+L     + 
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHRKYTK 608

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L    + +  D ++      +  + TGR S      QN+                
Sbjct: 609 LYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI---------------- 651

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            VR   I +N K  +  D + IE RVLA ++ E   IKAF    
Sbjct: 652 --------SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNA 703

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI++      FN   ++++ EQR I KV                     GL     + ++
Sbjct: 704 DIHLQAAKLIFNISDNQITSEQRRIAKVFN--------------FGILYGLTDFGLANDL 749

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                                + + K + +    +L   +   E
Sbjct: 750 NMNV------------------------------NQAKQMIKDYYSAFPSLLDFKEKQVE 779

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            I   S+RR   S++      +     +
Sbjct: 780 IATNQGY--------------------------ITTLSNRRRYISELNSTNHNIRQFGKR 813

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DIL   M +  K          IV  +HDEI+ E  +  
Sbjct: 814 I---------AVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQIHDEIILEVDNNQ 864

Query: 641 YFSVGTLC 648
                 + 
Sbjct: 865 LEQTKKIV 872


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 99/679 (14%), Positives = 186/679 (27%), Gaps = 161/679 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D ET         G+  Y +     L  +        +           D+ + L 
Sbjct: 37  FLGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALE 87

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112
                 V HN+ ++  +F++TLG+ +     +   T +LA               SL++ 
Sbjct: 88  MVQ-GFVLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDL 146

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +  K L+A   K +  +      +         +  Y   D      
Sbjct: 147 TRRY---IDSAVADNVKTLMADLAKANKTTKVNVWKKVPFEDP--HYQLYSGMDPILAAR 201

Query: 173 LFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           L ++L PL        D E  L  +   +   G+ +D++   +L   +  +    +E  +
Sbjct: 202 LIQKLAPLVKVSDELVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIAL 261

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKSILSHSNITQLAKDL 277
                 +     T  +   L    G+ +   +           L  ++ H    + A  +
Sbjct: 262 NYGCEKV---NSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAV 317

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           I     +       ++   +   S  R    +    A RT R S      Q LP  +   
Sbjct: 318 IEA-KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD--- 372

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     +R C +A  G ++   D    E RVLA ++ +  
Sbjct: 373 ------------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQR 408

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+AF +  D+++ T   AF   I K   E                              
Sbjct: 409 MIQAFLDDADLHLMTARAAFGEHIQKDDPE------------------------------ 438

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                            + +  +            A +  L     + V   +   +  V
Sbjct: 439 ---------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEV 483

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +L + L                                   I     RRL     +   
Sbjct: 484 QKLSQRLQREAIRNGYITTP---------------------FIDGLGGRRLPVDPQR--- 519

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635
                                  ++Q+ SRD+ C  +      G+   + L +HDEI++ 
Sbjct: 520 ----------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILAS 563

Query: 636 TPDTPYFS-VGTLCSLMTK 653
            P          +  LM +
Sbjct: 564 VPAEQAEWGANRIGELMAE 582


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/470 (14%), Positives = 133/470 (28%), Gaps = 121/470 (25%)

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-------HSN 269
           L  DI KL DG   +      L   LF    I     ++    T   +L         + 
Sbjct: 2   LQSDIYKLADGEF-NIDSPQQLGEVLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTE 60

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             ++    +L   A        +  + +    + R+  T    G + TGR S      QN
Sbjct: 61  DKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQN 119

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                                +R+  +A  G  L+  D + IE RVL
Sbjct: 120 IP------------------------VRTDDGIRIRTGFVAKEGHSLISFDYSQIELRVL 155

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A ++ +   +KA+ + +D++  T  K F    +                           
Sbjct: 156 AELSKDRHLVKAYQDNQDLHDLTARKIFFKTEED-------------------------- 189

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                            + +       +  +  +         + +  +           
Sbjct: 190 -----------------EISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITT 232

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +  ++  V +    +TE              RR  +      +  +              
Sbjct: 233 YFEEYPRVRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNIQ-------------- 278

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDI 624
                          +Q +R           +VQ  + +I+ + M    +         +
Sbjct: 279 ---------------AQAVRMA------VNTVVQGTAANIIKKVMIELHEEFKNDENIKM 317

Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +L VHDE++ E  D      +  +  +M     + K +PLKA G  AK +
Sbjct: 318 LLQVHDELIFEVRDEFAKEYMKKIEKIMENTVKF-KKVPLKANGSVAKNW 366


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/630 (13%), Positives = 168/630 (26%), Gaps = 136/630 (21%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
               +  N+  F RI+  +  G D   K           + A          S ++    
Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+       +R                  +       +Y    +  T EL  
Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                      L  +   +     +++ + + K   L+    K+L+++      G     
Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478

Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284
                LR  LF    +             + +   T +++L+          +IL     
Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++ L  A    G +  T    G + TGR S      Q + +            
Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
              ++  TI+          R+  ++S G   + AD + IE R+L  ++G+   +K F  
Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQE 647

Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            E    + T  ++  + P+++V+   R   K +  A+ Y  G +                
Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                              +         +++  K++ +     
Sbjct: 697 ---------------------------------LGVPIQEAAQFLESFLQKYKKIKDF-- 721

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                    + +                         +V    RR     +         
Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635
             +Q  R+          +VQ  + D+    M +              +V  +HDE++ E
Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808

Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
             D        L     +     + +PLK 
Sbjct: 809 VEDPQIPECAALVR---RTMESLEQVPLKV 835


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/645 (13%), Positives = 166/645 (25%), Gaps = 142/645 (22%)

Query: 65  TVMCVAHNSL-FERILFKKTLG-----IDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            +  V  N+  F R +  + LG       +     +   + A                  
Sbjct: 302 KLPVVCFNAKDFVRTVL-QFLGDADSWKHVADFVGLDPRIAAWLIDPR---DA------- 350

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDC----TRANHVQAWQLFGEYCKRDVEA-TREL 173
                +    K L          +          +  H+    L         +     L
Sbjct: 351 -TLSFEHLVAKYLEKSTTVKVSSTYGNASRNIVNQNVHMNLRILHRLMMTLCSKLKAYSL 409

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           ++        E  L  +   +     +++ + + +   L+    K+L+++      G   
Sbjct: 410 WQLFW---TLELPLIPILAVMERHSVQVNKEEMERTSALLGARLKELEQEAH-FVAGERF 465

Query: 234 SSRQTYALRMYLFLITGI------DLVDMS----EGTLKSILSHSNITQLAKDLILNRLA 283
                  LR  LF    +       L          T +++L+          +IL    
Sbjct: 466 LITSNNQLREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILEYRQ 525

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   ++ L  A   +G +  T    G + TGR S      Q + R          T
Sbjct: 526 VHKIKSTFVDGLL-ACMREGSISSTWNQTG-TVTGRLSAKHPNIQGISRHPIHITKPQNT 583

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
               +   TI+          R+  ++S G   + AD + IE R+LA ++G+   +K F 
Sbjct: 584 KGKEDEILTISP---------RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLKLFH 634

Query: 404 NGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
             E    + T  ++  N P++ V+   R   K +  ++ Y  G +               
Sbjct: 635 ESEREDVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYGAGKERLAAC---------- 684

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                               +         + +  K++ +    
Sbjct: 685 ----------------------------------LGVAVPEAARFLETFLQKYKKISDFA 710

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           +                                           RR     +   C+   
Sbjct: 711 QAAIAQCHQRGYVTSVT--------------------------GRRRPLPRI---CAQEP 741

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVS 634
              +Q  R+          +VQ  + D+    M                +V  +HDE++ 
Sbjct: 742 HLRAQAERQA------VNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLF 795

Query: 635 ETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKAEGYEAKRY 673
           E  D        L    M              +PLK      + +
Sbjct: 796 EVEDAQIPEFAALVRGTMESLQQVPALELQLQVPLKVSLSVGRSW 840


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/610 (14%), Positives = 165/610 (27%), Gaps = 123/610 (20%)

Query: 82  KTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKM-EEGKALIARFC 136
           + +G+ + +     T++ A           L + C   L       +    G+AL     
Sbjct: 395 REIGLRLETVAV-DTALAAYLVRPDQRSYDLADLCLRHLQRELPTAEDSGPGEALFDASE 453

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
                       R   ++A  +         E        L      E  L      +  
Sbjct: 454 VDGSTDGLTTAARTAALRAAAVRELAPVLQQEVEDIGAAGLERDL--ELPLARHLVAMEA 511

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252
            G  +D D +  L+   A +  +   D     D    +      L+  LF   G+     
Sbjct: 512 TGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQEVLFERLGLPKTKK 571

Query: 253 ---LVDMSEGTLKSILSHSNI----TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                      L  + + ++         + L+ +R  +   +   +  L +AV +DGR+
Sbjct: 572 TKTGYTTDADALVWLRAQASEGSTAETFLEALLRHRDVTRLRST--VQGLQKAVDADGRI 629

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T Q   A  TGR S      QN+P                            A   +R
Sbjct: 630 HTTYQQTIA-ATGRLSSVDPNLQNIP------------------------IRTEAGRRIR 664

Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              +  +G   L+ AD + IE R++A ++G++  I+AF  GED++    +K F    ++V
Sbjct: 665 EVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQVAPEEV 724

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           + E RA  K M   L Y        +      L +     +      F  +     +   
Sbjct: 725 TAEMRAKVKAMSYGLAYG-----LSSFGLSKQLGITPAEASALMDEYFARFGGVRDYLRA 779

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
           + D+       + ++G    L           +    +   E    +        +    
Sbjct: 780 VVDEARRTGYTETMLGRRRPL---------PDLASTNRQRREMAERMALNAPIQGSAADV 830

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                 +L    V+        A+                    
Sbjct: 831 ---------------------MKLAMLKVEDALDAQRLASRV------------------ 851

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663
                    +                 +V E       +V  L    M         +PL
Sbjct: 852 ---------LLQVHDE-----------LVLEVAPDEGSAVEALVREAMGSALD--LDVPL 889

Query: 664 KAEGYEAKRY 673
                  + +
Sbjct: 890 DVSIGTGRSW 899


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 104/677 (15%), Positives = 195/677 (28%), Gaps = 161/677 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D ET         G+  Y++     L  +   +    +           +  Q LR
Sbjct: 37  FLGLDTETT--------GLDIYSDDFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALR 87

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112
           +     V HN+ ++  + ++TLGI +     +   T +LA                L+  
Sbjct: 88  NVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEEL 146

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                   ++ +    K L+A   +    +  +  T+      +  +  Y   D      
Sbjct: 147 VKHY-IDANVAENV--KTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAAR 201

Query: 173 LFKRLIPLSD--------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           L ++LIPL           E  L  +   +  RG+ +D++   KL E + +++       
Sbjct: 202 LLQKLIPLVPAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKA 261

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV----DMSEGTLKSILSHS-NITQLAKDLIL 279
                  + +      +   L    G+ +            K +L           + I 
Sbjct: 262 --DILYGLENVNSPIQVAEALM-RRGVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAIT 318

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                       +    ++  S  R    +    A RT R S      Q LP  +     
Sbjct: 319 EAKKWGKWEKTWVRKFLDSRDSKDRCHANINPLQA-RTARMSITGIPAQTLPSGDW---- 373

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR C +A  G+ +   D    E RVLA ++G+   I
Sbjct: 374 -----------------------LVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMI 410

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AF +G D+++ T   A+                                          
Sbjct: 411 QAFKDGADLHLMTARAAW------------------------------------------ 428

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               + +   S    + +  +            A +  L   A + V   +   + GV +
Sbjct: 429 --PDREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQR 486

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
           L   L    +                             HIV P  RRL     +     
Sbjct: 487 LSAKLQREASQNG--------------------------HIVTPKGRRLPVDPSR----- 515

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETP 637
                                ++Q+ SRD+  E +    + G+   + L +HDEI++  P
Sbjct: 516 --------------AYSALNYLIQSTSRDVTGEALIRLHEAGFTKYLRLPIHDEILASVP 561

Query: 638 DTPYFS-VGTLCSLMTK 653
           +         +  LM +
Sbjct: 562 EDKAQWGAQEIARLMAE 578


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/668 (13%), Positives = 176/668 (26%), Gaps = 141/668 (21%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58
           D E  S   L    +     +  I     + +       D   ++   S           
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377

Query: 59  ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +    ++      L K      + S       V   +      + +   
Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-VSDLSN 436

Query: 115 ALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
            +                GK +             Y   +A       L  +Y  + +E 
Sbjct: 437 QIKLVDNLIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAY------LLKKYSDQLIE- 489

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +           +  L  +   I  +G  ID + +    + I ++   ++  +  L  
Sbjct: 490 QLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEWQMKILVA 549

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             I ++        ++  LF    +  ++    T K +L          +L+L     + 
Sbjct: 550 EEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHRKYTK 608

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                L    + +  D ++      +  + TGR S      QN+                
Sbjct: 609 LYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI---------------- 651

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            VR   I +N K  +  D + IE RVLA ++ E   I AF    
Sbjct: 652 --------SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNA 703

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           DI++      FN   D+++ EQR I KV                     GL     + ++
Sbjct: 704 DIHLQAAKLIFNLSDDQITSEQRRIAKVF--------------NFGILYGLTDFGLASDL 749

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                                + + K + +    +L   +   E
Sbjct: 750 NMNV------------------------------NQAKQMIKDYYSAFPSLLDFKEKQVE 779

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                            I   S+RR   +++      +     +
Sbjct: 780 IATSKGY--------------------------ITTLSNRRRYINELNSTNHNIRQFGKR 813

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
           +              +Q  + DIL   M +  K          I+  +HDEI+ E  D  
Sbjct: 814 I---------AVNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQ 864

Query: 641 YFSVGTLC 648
                 + 
Sbjct: 865 LEQTKKIV 872


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/679 (13%), Positives = 185/679 (27%), Gaps = 134/679 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           +ID  T S      +G+        +T    A   E   +    ++    + L ++L  +
Sbjct: 320 WID--TNSAHGSAPLGLTVAIVDGTVTGLGLATATETAFVPWAADRLDYVA-LTEWLASD 376

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLT 123
                 H+S  +  +     G+DI    +  T +           +       N+     
Sbjct: 377 A-PKFMHSSKAQLKI-ASANGLDIAGIAF-DTMLAGWVLKPGGKPEELEAQVYNYLGETI 433

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLIPLS 181
                               P     +    +W +    EY    ++        L  L+
Sbjct: 434 -----------DQGDPNQLVPETEALSPATLSWYVVRVAEYLAGRLD-----EGSLGVLT 477

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   +   G  ++  L+L L   + +  +++  +  ++    I +      L
Sbjct: 478 DIEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREI-NLGSPKQL 536

Query: 242 RMYLFLITGIDLV---DMSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLS 296
           +  LF    +           T  + L+           +L+L    ++   +  +  + 
Sbjct: 537 QEVLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKL-VQIITGIE 595

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +A+   GR+  T +  G S TGR +      QN+P                         
Sbjct: 596 KAIDDSGRVHTTYEQAG-SSTGRIASNDPNLQNVP------------------------I 630

Query: 357 LGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
                  +RS   A  G   L+ AD + IE R++A ++G++  I+AF  GED++    ++
Sbjct: 631 KTATGRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSR 690

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F     +V+ E R   K M   L Y               L ++        T  F  +
Sbjct: 691 IFGVEPAEVTAEMRTKVKAMSYGLAYG-----LSAFGLSKQLRIETSEAKALMTDYFARF 745

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                +   + +Q         + G                +    + L +         
Sbjct: 746 GAVRDYLRNVVEQARTDGYTTTIFGRRRP---------FGDLNSKNRVLRDNAERQALNS 796

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
               +                          +L    +  D       +           
Sbjct: 797 PIQGSAADI---------------------LKLAMLRIDSDMRVEGLKSR---------- 825

Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
                             +                 +V E        + T+    M+  
Sbjct: 826 -----------------MLLQVHDE-----------LVFEIAGGELERMTTIVHERMSGA 857

Query: 655 PSWAKGLPLKAEGYEAKRY 673
            S    +PL  +      +
Sbjct: 858 AS--LSVPLDVQIGTGHNW 874


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/509 (12%), Positives = 136/509 (26%), Gaps = 111/509 (21%)

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            ++L    + E  L  +   +   G +++   +  + E      + L ++I  +      
Sbjct: 8   HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 66

Query: 234 SSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
           +      L   LF    +             T   +L            IL+    +   
Sbjct: 67  NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 126

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              +  L + + +DG++         ++TGR S      QN+P                 
Sbjct: 127 STYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP----------------- 168

Query: 349 RGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                          +R           L+ +D + IE RVLA I+G++  I AF  G D
Sbjct: 169 -------IRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 221

Query: 408 IYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           I+ +T  + F       V+   R   K +   + Y               L + +     
Sbjct: 222 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKS 276

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
              + FE +   +++   +  +  +    + L     EL           +     ++  
Sbjct: 277 YIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRS 327

Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                 +      SA  +  +  + + +  +                             
Sbjct: 328 FAERTAINSPIQGSAADILKISMINLDKALQAGGFR------------------------ 363

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                                     + +         IVL V        P+    ++ 
Sbjct: 364 -------------------------AKCLLQVHDE---IVLEV--------PNDELTAIK 387

Query: 646 TLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            L    M      A  +PL  +    + +
Sbjct: 388 KLVKDTMEAAVDLA--VPLCVDESTGQSW 414


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/659 (13%), Positives = 173/659 (26%), Gaps = 124/659 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTLGI 86
             +T  A A  D        T  +      L     +       H +        +  G 
Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418

Query: 87  DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            +       T++ A          +L +  L     E   +                D+ 
Sbjct: 419 MLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEE---SGQQQLSLLDDEDAA 474

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
             +      +++  +       D E        L+   D E  L  +   +   G  +D 
Sbjct: 475 DAEAAEGEILRSRAVRDLAAALDTELADIEATGLLA--DMELPLLEVLANLESTGIAVDT 532

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------- 256
             +  LQ   A    +   +      G   +      L++ LF    +            
Sbjct: 533 THLHDLQSAFAARVAE-AAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTT 591

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
               L+S+   +    L    +L    ++   +  ++ L + V+ DGR+  T     A  
Sbjct: 592 DADALQSLFEKTQHPFLEH--LLEHRDATRLKVT-VDGLLKTVAEDGRIHTTFNQTVA-A 647

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375
           TGR S      QN+P                            A   +R   +   G   
Sbjct: 648 TGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVVGEGYET 683

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+ AD + IE R++A ++G+   I+AF  GED++    ++AF  PI++V+ E R   K M
Sbjct: 684 LLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAM 743

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y               L +       +  + F  +     +   + +Q  +    
Sbjct: 744 SYGLAYG-----LSAFGLAAQLKISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYT 798

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           + L G          R     +    +   E                      ++  +  
Sbjct: 799 ETLFGR---------RRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMIDVQ-- 847

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     R L  +                                 ++       + 
Sbjct: 848 ----------RALREA--------------------------------GLAS----RMLL 861

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
                   +VL        E        V  L    M         +PL+      + +
Sbjct: 862 QVHDE---LVL--------EVAAGERERVEQLVREKMAAAID--LSVPLEVSVGTGRSW 907


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/668 (14%), Positives = 185/668 (27%), Gaps = 154/668 (23%)

Query: 53   MPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPS---KRWICTSVLARTN- 103
            +   L Q LR E+   V H+              +  G  +          T + A    
Sbjct: 479  LIEALDQLLRQESDHIVLHDFK---RWLHLTSNLRNQGQPLGGPDFLPVADTKLEAYLAQ 535

Query: 104  -GLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                + +          L+     TK +   +    F  G           A   +    
Sbjct: 536  PDATAKVDGLRHYAQKFLHLDVGETKEKT--SEQGAFDLGLESDEETGENSAPSPEPADP 593

Query: 159  FGEY-------CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRI 201
              E        C  D    R L     P+             E  +  +   +   G  +
Sbjct: 594  RQEEREREETDCALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGV 653

Query: 202  DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259
            D   + +++E  + + ++  + I     G   + +    L+  LF   G+     ++   
Sbjct: 654  DQSRLEQMRESFSAQAEQ-AQQIAWQEAGKEINLQSPKQLQAVLFDDMGLTPTKKTKSGG 712

Query: 260  --TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVS-SDGRLRGT 308
              T  + L    +  +  +        L+ +R  +    I  + TL +A+   D R+  T
Sbjct: 713  RTTNAAALQELYMRSIHNERANAFLGALLRHREVNKLKQI--VQTLIDAIDVRDSRIHTT 770

Query: 309  LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
             +   A  TGR S      QN+P                           +    +R   
Sbjct: 771  FEQTVA-ATGRLSSTDPNLQNIP------------------------NRNVEGREIRGAF 805

Query: 369  IASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +AS+G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  PID++S +
Sbjct: 806  VASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSD 865

Query: 428  QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            QR+  K M   L Y        T      L +     ++     F  + +   +   +  
Sbjct: 866  QRSHIKAMSYGLAYG-----LSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLESLVA 920

Query: 488  QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
            Q  +    + + G          R     +    + L +             +       
Sbjct: 921  QAKKRGYTETMFGR---------RRYFPDLRSSRRQLRDAAERAALNAPIQGSAADIMKI 971

Query: 548  RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                               +  Y D+K                                 
Sbjct: 972  A-----------------MKKAYQDLKDAGVKSR-------------------------- 988

Query: 608  DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666
             I+                     +V E        V   +   M      A  +PL   
Sbjct: 989  -II----LQIHDE-----------LVVELAPGEQEQVTAMVKEAMEHAVKLA--VPLDVS 1030

Query: 667  GYEAKRYR 674
                  ++
Sbjct: 1031 TGVGSDWQ 1038


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/621 (14%), Positives = 165/621 (26%), Gaps = 126/621 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSE 120
           +     H+     +      G  +       T++ A          +        L    
Sbjct: 421 SRPKAVHDVKGPILALA-ARGFSLAGVT-SDTALAAYLALPGQRTFDLADLVLRYLRRDL 478

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                E G+  I    + +  +      RA    A  L  +  +R   A           
Sbjct: 479 RPETSETGQLTIDGSDEAAAAAADVVRARATLELADALDADLARRGATALLR-------- 530

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E  L  +   +   G   D D +L LQ+    +  ++     ++      +      
Sbjct: 531 -DVELPLVTVLAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPF-NLSSPKQ 588

Query: 241 LRMYLFLITGIDLVD---MSEGTLKSILSHS---NITQLAKDLILNRLASSGSAILKLNT 294
           L++ LF   G+           T    L+         L   L+ +R  +       +++
Sbjct: 589 LQVILFDELGLPKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVARLR--TVVDS 646

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L   +   GR+  T     A  TGR S      QN+P                       
Sbjct: 647 LIPMIDDAGRVHTTFNQMIA-ATGRLSSADPNLQNIP----------------------- 682

Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    +R   +   G + L+ AD + IE R++A ++G+   I AFA+GED++    
Sbjct: 683 -VRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTFVA 741

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           A+AF  P+D+V  E R   K M   L Y               L +       +  + F 
Sbjct: 742 AQAFGIPVDEVDPELRRRIKAMSYGLAYG-----LSAFGLAGQLGIHPEEAREQMEAYFA 796

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            +         + ++       + ++G          R     +        +    +  
Sbjct: 797 RFGGVRDFLRGVVERARADGYTETILGR---------RRYLPDLTSDNTQRRQMAERMAL 847

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                 +                    +L   R+L     +                   
Sbjct: 848 NAPIQGSAADIIKI------------AMLGVDRKLREHGARSRL---------------- 879

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652
                               +               DE+V E        V  L    M 
Sbjct: 880 --------------------LLQVH-----------DELVLEIAPGERADVEALVRTEMG 908

Query: 653 KNPSWAKGLPLKAEGYEAKRY 673
               +   +PL+      + +
Sbjct: 909 GA--YQMSVPLEVSVGSGRTW 927


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/636 (13%), Positives = 165/636 (25%), Gaps = 139/636 (21%)

Query: 65   TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
                +  N+  F RI+  +  G D   K           + A          S ++    
Sbjct: 915  KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFVGLDPRIAAWLIDPSDAVPSFEDLVEK 973

Query: 116  LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                    K+       +R                  +       EY    +  T E+  
Sbjct: 974  YCEKSITVKVNSTYENSSRNIVNQNVRDNLKILYRLTMDLCSKLKEYGLWQLFCTLEV-- 1031

Query: 176  RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                       L  +   +     +++ + + K+  L+    KKL+++   +        
Sbjct: 1032 ----------PLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVAGERFLIM 1081

Query: 236  RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284
                 LR  LF    +             + +   T +++L+          +IL     
Sbjct: 1082 SSN-QLREILFGKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 1140

Query: 285  SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                   ++ L  A    G +  T    G + TGR S      Q + +            
Sbjct: 1141 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFK 1198

Query: 345  QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
               +   TI+          R+  ++S G   + AD + IE R+LA ++G+   +K F  
Sbjct: 1199 GKEDEILTISP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 1249

Query: 405  GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             E    + T  ++  + P++ V+   R   K +  A+ Y  G +                
Sbjct: 1250 SERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAGKERLAAC----------- 1298

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                               +         +++  K++ +    +
Sbjct: 1299 ---------------------------------LGVPVQEAAQFLESFLQKYKKIKDFAR 1325

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                           +                           RR     +         
Sbjct: 1326 AAIAQCHRTGYVVSIM--------------------------GRRRPLPRIHAHDQ---Q 1356

Query: 583  ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635
              +Q  R+          +VQ  + D+    M                +V  +HDE++ E
Sbjct: 1357 LRAQAERQA------VNFVVQGSAADLCKLAMIRVFTAVATSRTLTARLVAQIHDELLFE 1410

Query: 636  TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665
              D        L    M      +       +PLK 
Sbjct: 1411 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 1446


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 155/621 (24%), Gaps = 131/621 (21%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             L ++L       V  ++  +     +  GI +         +            +L +
Sbjct: 367 DALAEWLAS-DTPKVMADAKPQVKALLR-EGIALGGIA-SDVILAGWLVRPSFPDKTLGD 423

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                   +                       P          AW +      +  +   
Sbjct: 424 LVQRYLDEKLPEADPT-------------QLVPETEGATPGQLAWFIRRVAEAQRADLPE 470

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            + + L    D E         +   G  +    +      +      L  D        
Sbjct: 471 RVAEVLD---DIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHE 527

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI--TQLAKDLILNRLASSG 286
           + +      L+  LF    +     ++    T  + L+           DL+L    ++ 
Sbjct: 528 V-NLGSPKQLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREATK 586

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                ++ L  A   DGR+  T    G S+TGR S      QN+P               
Sbjct: 587 LK-QIIDALDTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIP--------------- 629

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                         S  +R+      G   L+ AD + IE R++A ++G+   I+AF +G
Sbjct: 630 ---------IRTEESRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSG 680

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           ED++    A+ F     +V+   R   K M   L Y               L ++Q    
Sbjct: 681 EDLHRFVGARVFGVEPAEVTPAMRTKVKAMSYGLVYG-----LSAFGLSKQLRIEQSEAK 735

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                 F  +     +     +Q  +    + + G                +  + + L 
Sbjct: 736 KLMLEYFARFGAVRDYLRGSVEQARQDGYTETIFGRRRP---------FPDLTSMNRVLR 786

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E             +                          ++    ++ + +     + 
Sbjct: 787 ENAERAALNAPIQGSAADI---------------------MKVALFRIREELASAGLRSR 825

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                                       +               DE+V E     + +V 
Sbjct: 826 V---------------------------LLQIH-----------DELVVEIAPGEWDAVE 847

Query: 646 TLCS-LMTKNPSWAKGLPLKA 665
            +    M         +PL  
Sbjct: 848 RIVRARMADAAE--LSVPLDV 866


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 101/676 (14%), Positives = 191/676 (28%), Gaps = 159/676 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D ET         G+  Y++     L  +   +    +           +  Q LR
Sbjct: 37  FLGLDTETT--------GLDIYSDGFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALR 87

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112
           +     V HN+ ++  + ++TLGI +     +   T +LA                L+  
Sbjct: 88  NVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEEL 146

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                    + +    K L+A   +    +  +  T+      +  +  Y   D      
Sbjct: 147 VKHY-IDAPVAENV--KTLMATLAREYKTTKAHIWTKVEWTNPY--YQLYAGMDPILAAR 201

Query: 173 LFKRLIPLSD--------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           L ++LIPL           E  L  +   +  RG+ +D++   KL E + +++       
Sbjct: 202 LLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKA 261

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---SEGTLKSILSHS-NITQLAKDLILN 280
                  + +      +   L                   K +L           + I  
Sbjct: 262 --DILYGLENVNSPIQVAEALMRRGVKITERTEGGQPKVDKVLLDRLIKEGDPLAEAISE 319

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +    ++  S  R   ++    A RT R S      Q LP  +      
Sbjct: 320 AKKWGKWEKTWVRKFLDSRDSKDRCHASINPLQA-RTARMSITGIPAQTLPSGDW----- 373

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR C +A  G+ +   D    E RVLA ++G+   I+
Sbjct: 374 ----------------------LVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQ 411

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           AF +G D+++ T   A+                                           
Sbjct: 412 AFRDGADLHLMTARAAW------------------------------------------- 428

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
              + +   S    + +  +            A +  L   A + V   +   + GV +L
Sbjct: 429 -PDREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQKL 487

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            + L    +                             HI+ P  RRL     +      
Sbjct: 488 SRKLQMEASQKG--------------------------HIITPVGRRLPVDPSR------ 515

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638
                               ++Q+ SRD+    +    + G+   + L +HDEI++  P 
Sbjct: 516 -------------AYSALNYLIQSSSRDVTGRALIRLHEAGFTRYLRLPIHDEILASVPA 562

Query: 639 TPYFS-VGTLCSLMTK 653
                    +  LM +
Sbjct: 563 DKAQWGAQEIARLMAE 578


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/592 (13%), Positives = 157/592 (26%), Gaps = 134/592 (22%)

Query: 91  KRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
            R   T +LA                 L               I  F   +         
Sbjct: 3   IRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKAKAEKLELLSVE 56

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                +  + F +    +   +           + E     +   +  +G++ID      
Sbjct: 57  LNALKRLCEYFEKGGLEENLLSLA--------REVETPFVKVLMGMEFQGFKIDAPYFKC 108

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L++    E   L+  I+ L      +      L   L+   G+   + S  T +  L   
Sbjct: 109 LEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEVLYEKLGLP-KNKSHSTDEKSLLKI 166

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                +  LIL     +         L      D ++  T    G + TGR S      Q
Sbjct: 167 LDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQ 225

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
           N+P                                +R   IAS     L+  D + IE R
Sbjct: 226 NIP------------------------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELR 261

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA  + +   ++AF  G DI++ T    F      ++KE+R+I K +            
Sbjct: 262 LLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSINFG--------- 309

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+                                 + +    +     +   
Sbjct: 310 -----LVYGMGS------------------------------KKLSETLNISLNEAKSYI 334

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +A+  +   +      + E      +    +   RV +            +         
Sbjct: 335 EAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREG------ 388

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GY 622
                                            I Q  + D+L  GM   ++        
Sbjct: 389 ------------------------------VNAIFQGSASDLLKLGMLKVSERFKNNPSV 418

Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            ++L VHDE++ E  +     +   +  ++     +   +PL+   + AKR+
Sbjct: 419 RLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVAKRW 469


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 182/664 (27%), Gaps = 133/664 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58
           D E  S   L    +     +  I     + +       D   ++   S           
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377

Query: 59  ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
               ++L +  +    ++      L K      + S       V   +      + +   
Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-ISDLSN 436

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            +   +++ ++E        F KG   +P  D    +   + + +      D    +   
Sbjct: 437 QIKLVDNMIELETIDE---IFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQ 493

Query: 175 KRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                     +  L  +   I  +G  ID + +    + I ++   ++  +  L    I 
Sbjct: 494 TNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEID 553

Query: 234 SS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           ++        ++  LF    +  ++    T K +L          +L+L     +   I 
Sbjct: 554 NNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHRKYTKLYIT 612

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L    + +  D ++      +  + TGR S      QN+                    
Sbjct: 613 YLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI-------------------- 651

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        VR   I +N K  +  D + IE RVLA ++ E   IKAF    DI++
Sbjct: 652 ----SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHL 707

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
                 FN   D+++ EQR I KV                     GL     + ++    
Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGLANDLNMNV 753

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                            + + K + +    +L   +   E    
Sbjct: 754 ------------------------------NQAKQMIKDYYSAFPSLLDFKEKQVEIATN 783

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                        I   S+RR    ++      +     ++   
Sbjct: 784 QGY--------------------------ITTLSNRRRYIDELNSTNHNIRQFGKRI--- 814

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                      +Q  + DIL   M +  K          IV  +HDEI+ E  D      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQT 868

Query: 645 GTLC 648
             + 
Sbjct: 869 KKIV 872


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/657 (14%), Positives = 189/657 (28%), Gaps = 144/657 (21%)

Query: 17   PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
              +G+    +     I+  A  W        D  ++      +   + ++    + +N  
Sbjct: 1054 RTIGLNHTIKSPEVPISGFALFWGHSTAYYLDVAKKRETIDLIRHIVNEQQKTIIMYNCK 1113

Query: 75   FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134
             +     K  G++    R     V                         + +    L+  
Sbjct: 1114 QQIKTLHKWHGVEFR-SRVHDPKVADWLLQPEG----------------QDKTLHQLVET 1156

Query: 135  FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
            +C         D    +  + +     +  +++E        L+ + D E  +  +   I
Sbjct: 1157 YCPELPLDQGQDAKLRSIFECY--LSWHVLKNIEVELS-KSNLLTVFDTEMSIMRILANI 1213

Query: 195  NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
               G   ++  +  L +L+ +E K ++     +  G   S   +  L   L         
Sbjct: 1214 ELAGIGANVSTLSNLVDLLTRELKAIERQGHAIA-GRHFSFASSRQLAKILQSDNN---- 1268

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
              S+ +L+              LIL     S +    L  L   V  +GR+ G    + A
Sbjct: 1269 --SKKSLQK------NDNPLASLILKWRKISATIGKTLQPLIRLV-ENGRIFGCYVTHTA 1319

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
              TGR +      QN+ +    + +                         R   + S G 
Sbjct: 1320 --TGRITMHEPNLQNVAKDFDIDGVEV---------------------SCRKAFVPSQGH 1356

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             +V AD   +E RVLA ++ ++          DI+    AK  N   ++V++E R   K 
Sbjct: 1357 VMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQ 1416

Query: 435  MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
            +   + Y  G+K          L+  +                                 
Sbjct: 1417 IIYGIIYGMGSKALAE-----QLNTDEAQAT----------------------------- 1442

Query: 495  KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
                         + +R  + GV +   ++ E                            
Sbjct: 1443 ----------RFMQTFRNAYPGVQKYISEIIETCRKTG---------------------- 1470

Query: 555  KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                 +   + RR   + +      + +   Q  R+           +Q  + D++   M
Sbjct: 1471 ----FVETLAGRRRFLAHINHKNGAVKS---QAERQA------VNTTIQGSAADLVKMAM 1517

Query: 615  KNAT-----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665
                     +    +VL +HDE++ E P+    S V  L + M  +   +   P+K 
Sbjct: 1518 VRLETVFLGEKEVKLVLHLHDELLYEVPEGSLGSFVRILKTEMEGSVKLSIPFPVKV 1574


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/693 (13%), Positives = 190/693 (27%), Gaps = 149/693 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLF 75
            K  + A  E  V+         E     + T     + S   +++ D  +  +  +   
Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSL-----KNACL-ALNFSEHLT-K 124
           +R    +  G  +        S+ +   G        L     ++     L   +    +
Sbjct: 430 QRK-LLREYGYKLDG-AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSE 487

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
           +   +  ++ F     ++  Y    +  +        +         +   +L    D E
Sbjct: 488 LVFPEEALSLFEMPGEENLRYFTQVSRVIHELARILHF-------EMQEQGQLKIYEDIE 540

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSSRQTYA 240
             L  +   +   G  +   L+ +L +  +      +E          +G   +      
Sbjct: 541 LPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQ 600

Query: 241 LRMYLFLITGIDLV-------DMSEGTLKSILS----HSNITQLAKDLILNRLASSGSAI 289
           L+  LF   G+               ++  +L+     S+  Q    L   R        
Sbjct: 601 LQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQT 660

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L +A  +DGR+  T Q   AS TGR S      QN+P                  
Sbjct: 661 --VEGLQKAAVTDGRVHTTFQQNAAS-TGRLSSTAPNLQNIP------------------ 699

Query: 350 GETIADPLGLASDCVRSCIIASNGKK-------LVVADLAGIEARVLAWIAGEDWKIKAF 402
                         +R   I +           L+ AD + IE R++  +A ++  I+A+
Sbjct: 700 ------IRTDEGRRIRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAY 753

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           A+GED++    ++ F    ++V+ + RA  K M   L Y               L++   
Sbjct: 754 ADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRFGLAKQLNISSD 808

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                 T+ F+ + +       +  Q       + + G          R     +    +
Sbjct: 809 EAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------RRSLPDLDSPNR 859

Query: 523 DLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
              E             +A  +  +  + +              RRL    +K       
Sbjct: 860 TRREAAERAALNAPIQGTAADIIKIAMINIH-------------RRLQEEKLKT------ 900

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
                                           +                EI+ E      
Sbjct: 901 ------------------------------RMLLQVHD-----------EIILEVAVGER 919

Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +   +    M++       +PL  +    K +
Sbjct: 920 EAAQRILVEEMSEAIE--LKVPLDVQVGWGKSW 950


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/653 (12%), Positives = 177/653 (27%), Gaps = 150/653 (22%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGID-----IPSKRWICTSVLARTNG 104
             +  ++L+         +  N+  F R    +  G D     +     +   + A    
Sbjct: 298 ENVLREVLR----RKRPVICFNAKDFVRTAL-QLFGDDGSWKCVAGFVGLDPRIAAWLID 352

Query: 105 LP---SSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                 S ++     L              L      G+      + T    ++      
Sbjct: 353 PSDAAPSFEDLVAKYLGNPTT---------LTVNSMHGNSSRKTVNQTVRAKLRVLHRLT 403

Query: 161 EYCKRDVEAT--RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
            +    ++     +LF  L      E  L  +   +     R++ + + ++  L+    K
Sbjct: 404 MHLCSQLQVCGLWQLFWTL------ELPLIPILAVMESHRIRVNKEEMERMSALLGSRLK 457

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-------LVDMS----EGTLKSILSH 267
           +L+++      G        + LR  LF    +                   T  + L+ 
Sbjct: 458 ELEQEAH-FVAGEQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNA 516

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                    +IL            ++ L  A    G +  T    G + +GR S      
Sbjct: 517 LQDLHPLPRIILEYRQVHKIKSTFVDGLL-ACMKKGSVSSTWNQTG-TVSGRLSAKHPNI 574

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q + +              + + ++        S   R+  ++S G   + AD + IE R
Sbjct: 575 QGISKHPIQ----------ITKPQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELR 624

Query: 388 VLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
           +LA ++G+   +K F   E    + T  ++  +   ++V+   R   K +  A+ Y  G 
Sbjct: 625 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGAGK 684

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           +                                                   +       
Sbjct: 685 ERLAAC--------------------------------------------LGVPVREAAR 700

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             +++  K++ +    +                            + R ++  ++     
Sbjct: 701 FLESFLQKYKKIKDFTQA--------------------------TVARCQQTGYVESIMG 734

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620
           RR     ++          +Q  R+          +VQ  + D+    M           
Sbjct: 735 RRRPLPRIRAHDP---QLRAQAERQA------ANFVVQGSAADLCKMAMIRIFTAMATSP 785

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKA 665
                ++  +HDE++ E  D+       L    M              +PLK 
Sbjct: 786 TLTARLLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKV 838


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/590 (13%), Positives = 157/590 (26%), Gaps = 148/590 (25%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           +L  L ++++  + ++      L K                ++                 
Sbjct: 372 ILNLLTNKSIKKITYSLK---HLLKFYANQSHQITAIEDLELMQYALS------------ 416

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G      F K        + +    +    L+ +          +  K 
Sbjct: 417 ----------AGLVQKNLFTKTLTKDNIINESARIVINFISLYKQ-----TLLELQKNKA 461

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                + +     +   +   G ++D + + +L +    E  K++E+I  L+     +  
Sbjct: 462 FRLYREIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKF-NIG 520

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKS------ILSHSNITQLAKDLILNRLASSGSAIL 290
               L   LF    +   +    T         +   S        L+L     +     
Sbjct: 521 SQKQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNT 580

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             ++L + +++  +   T     ++ TGR S      QN+P                   
Sbjct: 581 YTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVP------------------- 621

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                      + +R   IA  G KL+ AD + IE R+L+ IA  D   +AF N EDI+ 
Sbjct: 622 -----IRSSDGNKIREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHT 676

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  + FN    +++ E R   K +                    G+             
Sbjct: 677 QTACQIFNLKKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 710

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                 A +  +  +      K + A+++GV +         + 
Sbjct: 711 ------------------AFGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACASR 752

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                        +     R+     +               R 
Sbjct: 753 NGY--------------------------VTNFFGRKCFIPLIHDKK-----LKQFAERA 781

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634
                      +Q  + DI+   M    K          ++L +HDE++ 
Sbjct: 782 AINAP------IQGTNADIIKIAMIKLDKEIEERKLKTRLILQIHDELLF 825


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 107/738 (14%), Positives = 205/738 (27%), Gaps = 97/738 (13%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-------WDDEPVKLWDRT---EQS 51
                 D ET     L KV          +   +         +D       D        
Sbjct: 624  KYHACDTETI-AIDLKKVSP---IGHGRMICFSIYCGPDVKFFDGNTRLWVDVMDDINGE 679

Query: 52   AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------ 105
            A+  +  +Y  DE+++ V HN  F+R +F     I++       T  +AR          
Sbjct: 680  AVLQEFKEYFEDESILKVWHNYAFDRHIFYNH-NINVKGFG-GDTLHMARLWNAARQNSG 737

Query: 106  PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSID-SPPYDCTRANHVQAWQLFGEYC 163
              SL+  C   LN ++   K   G+  I    +     + P         ++   + EY 
Sbjct: 738  GYSLEALCRELLNKTKTPIKDLFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDWIEYS 797

Query: 164  KRDVEATRELFKRLIPLSDG--------ERDLW--------LLDQTINDRGYRIDLDLVL 207
              D E T  L + L    +           D +         L   +  RG +ID+D + 
Sbjct: 798  SLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDIDYLK 857

Query: 208  KLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
             L+    ++ ++     +             +      ++  LF          ++ T +
Sbjct: 858  NLESTAFKDMEENRNRFISWASKHSEGAKYMNPDSDAQIQQLLF------APVTNKKTKE 911

Query: 263  SILSHSNITQLAKDLILN--RLASSGSAILKLNTL---SEAVSSDGRLRGTLQFYGASRT 317
             +    +      + I+   R     +    L+ L   S +V++ G          AS  
Sbjct: 912  EMPKSKDFETENVEGIIEEGRTKPKKNMSFILDGLGFPSNSVTTSGWPSVD-----ASAL 966

Query: 318  GRWSGCVFQ-------PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               +G   +        Q    +  ++E      +           LG     + + II 
Sbjct: 967  RELAGKSPENGKFGTAYQFFVDKSENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIP 1026

Query: 371  SNGKKLVVAD-LAGIEAR--VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
                   +AD  + +     V         +     N   +    Y        +  +  
Sbjct: 1027 ----LQKLADKNSRLHTSVNVNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTL 1082

Query: 428  QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
              A    +EL L            A   G D    +         E  ++ E    W  D
Sbjct: 1083 IVADYGQLELRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGD 1142

Query: 488  QYPEFAVKDKLIGTACEL-----VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              P   +   +  +            A+     G+   W    +     +          
Sbjct: 1143 GEPPKPLLKNIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETL-NRWYEDRPE 1201

Query: 543  VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
            V    R  +              R     D+      +        R            +
Sbjct: 1202 VLVWQRKTIATAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHA---ERASI------NTPL 1252

Query: 603  QAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
            Q  + DI+ + M          + GY +++ +HDE++ E P+        L  +LM+   
Sbjct: 1253 QGGAADIVMKAMLIIEDNKRIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSNPL 1312

Query: 656  SWAKGLPLKAEGYEAKRY 673
            +    + L  +   AK +
Sbjct: 1313 TTPLLIDLVVDCRYAKTW 1330


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/507 (14%), Positives = 136/507 (26%), Gaps = 118/507 (23%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           + E+ L  + +T+++RG  ID   +  L+E       +   +   +    + +      L
Sbjct: 498 ELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEV-NLASPKQL 556

Query: 242 RMYLFLITGIDLVDM---SEGTLKSILSHSN--------ITQLAKDLILNRLASSGSAIL 290
           ++ LF    +           T    L+             Q    L+  R  S      
Sbjct: 557 QVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFREMSKL--TG 614

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L  L + V +  R+  T Q   A  TGR +      QN+P                   
Sbjct: 615 YLVGLDKVVDAGSRVHTTFQQTAA-ATGRLASTEPNLQNIP------------------- 654

Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +R   +A  G   L+ AD + IE R++A ++ +   I+AF +GED++
Sbjct: 655 -----VRTAEGQRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLH 709

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
               ++ F    D V    R+  K +   L Y               L + +        
Sbjct: 710 NFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYG-----LSAFGLSRQLRISRAEATALRD 764

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
             FE +     +     +        + ++G          R     +    +   E   
Sbjct: 765 GYFERFGGVRDYLHHTVETARTTGYTETILGR---------RRYLPDLTSDNRQRRENAE 815

Query: 530 C-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
              +      SA  +  +  L +    R                                
Sbjct: 816 RVALNSPIQGSAADIIKLAMLRVESRMR-------------------------------- 843

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
                            + ++    +                 +V E        V  + 
Sbjct: 844 -----------------AAELSSRMLLQVHDE-----------LVVEVAAGELDQVREIV 875

Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRYR 674
              M     +   +PL       + +R
Sbjct: 876 EEGMGSA--YQLSVPLDVGVGIGRTWR 900


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 104/343 (30%), Gaps = 53/343 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57
             L +D ET S  P+          +A +   +++  ++         DR E     +  
Sbjct: 348 KILSLDTETTSTSPM----------EAELVGLSFSVKEKEAFYVAIPKDREEALQYVNIF 397

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                D  ++ V  N  ++ ++ +   G+DI  K +  T +        L  ++      
Sbjct: 398 KPLYEDPEILKVGQNIKYDYVVLRNY-GVDIQGKMF-DTMLAHYLIQPELRHNMDYMAET 455

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++     +   G K    +  +       Y               EY   D + T  L
Sbjct: 456 LLHYQTMHIEELIGPKGKGQKNMRDLSPEEIY---------------EYAAEDADITLRL 500

Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
              L P              E  L  +   +   G  +D + + +++    +  ++ +  
Sbjct: 501 KNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESLNEIERTFTERMQQYERH 560

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278
             +L      +      +   LF    I D    ++     T + +L          + I
Sbjct: 561 AFELAGEEF-NISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSEEVLLQLKDKAPIVEDI 619

Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
           LN           +  L + ++   G +  +      + TGR 
Sbjct: 620 LNYRGMKKLLGTYVEALPKLINPRTGHIHTSFNQAV-TATGRL 661


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 121/684 (17%), Positives = 209/684 (30%), Gaps = 173/684 (25%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M +  L +D+ET         G+  +  +  +   A       V ++D            
Sbjct: 145 MRQPVLGVDLETT--------GLDPHTSRPRLLSLAM---PGAVVVFDLFGVP--LEVFY 191

Query: 59  QYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114
               R+E  + V HN  F+ +   K        KR   T +  +     +   +LK+   
Sbjct: 192 PLFSREEGPLLVGHNLKFDLLFLLKAGVWRASGKRLWDTGLAHQVLHAQARMPALKDLAP 251

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L+           K L      G + S        +      L+ E         R   
Sbjct: 252 GLD-----------KTLQTSDWGGPLSSEQVAYAGLDAAVPLVLYREQR------ERART 294

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            RL  + + ER        +  +G     +L  +      +E + L  ++         +
Sbjct: 295 LRLEKVLEVERRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGELPFG-----VN 349

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                 +  YL    G+DL D  E T    L+      L   L+  R A+   +      
Sbjct: 350 WNSPAQVLAYLKGE-GLDLPDTREDT----LAGYREHPLVAKLLRYREAAKRVST-YGKE 403

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            ++ ++   GR+  + Q  GA  TGR +      Q +PR                     
Sbjct: 404 WAKHLNPATGRIHPSWQQIGAE-TGRMACRKPNLQQVPRDPA------------------ 444

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R       G+ ++ AD + IE R+ A IA E   ++AF  G+D++  T 
Sbjct: 445 ----------LRRAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTA 494

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +     P+++V KE R + K +   L Y  GA+  +  A                     
Sbjct: 495 SLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGLRRYALT------------------- 535

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A   KL     + ++ A+   +  + +  +           
Sbjct: 536 -------------------AYGVKLTLEEAQKLRDAFFRAYPALKRWHR----------- 565

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                              + + +V +     RR                         Y
Sbjct: 566 ------------------SQPEGEVVVRTLLGRRRTTDR--------------------Y 587

Query: 594 GGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFS-VGTL 647
             KL    VQ    D L   +    +N     G   VL VHDE+V E P+      + TL
Sbjct: 588 TEKL-NTPVQGTGADGLKMALALLWENRGLLWGAFPVLAVHDEVVLEAPEEGAKEYLETL 646

Query: 648 CSLMTKNPSWAKG--LPLKAEGYE 669
            +LM +      G  +P++ EG  
Sbjct: 647 TALMRRGMEEVLGGAVPVEVEGGI 670


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/719 (14%), Positives = 188/719 (26%), Gaps = 207/719 (28%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           FID ET                   I L     +  P+ + D       P  +   +  +
Sbjct: 26  FIDTETTPKD---------------IRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            V    HN  ++     K    DI       T V A+  GL     +     N       
Sbjct: 71  GVA--GHNLKYDLKYLMKY---DIHPYTTFDTMVGAQLIGLNR--VSLASVYNHFT---- 119

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             E      +F   S              +  +    Y  +DVE  R L+++L    + E
Sbjct: 120 -GESIDKKEQFSNWSSK------------ELTESQIFYAAKDVEVLRLLYEKLKNELNKE 166

Query: 185 RDLWLLDQT--------------------------INDRGYRIDLDLVLKLQELIAQERK 218
             +  + Q                           I   G  ID   +  +++ + ++ +
Sbjct: 167 PTIIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQKKTQ 226

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274
           +L    +               +  +L     I L    +         ++ H +     
Sbjct: 227 EL---AMNFYIKYRIDISSPKKVGEFLENHLNISLPRTDKDNIITDDSVLIEHLDYENEK 283

Query: 275 KD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  ++  R         KL+ + E  + + R+       GA  TGR S      QN
Sbjct: 284 AKDVISSVLEFRKLHKLQ--EKLSEILEY-NENNRIHPEFWQIGA-VTGRMSSSRPNVQN 339

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +PR                               +RS + A +G   V+AD + IE R+ 
Sbjct: 340 IPR------------------------------ELRSILKAKDGYVFVIADFSQIELRIA 369

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A    ++  I     GED++  T +      ++ ++KE+R   K     L Y    K   
Sbjct: 370 AEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLS 429

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
             A                                        +    +     +  ++ 
Sbjct: 430 LYAR--------------------------------------NSYGIDMSIEEAKRFREV 451

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           + +  QG+    + + +      +    +       +                       
Sbjct: 452 FFSTFQGIKAWHERIKKELK--AKGEIRLKTIGGKPMIAYTFTD---------------- 493

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-----------NAT 618
                                           +Q    ++L   +            +  
Sbjct: 494 ---------------------------AANYPIQGTGAELLKLSVLIFSQELKRAFPSIF 526

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYRK 675
               ++V  VHDEIV E  +     V  L    M K  S     + ++ E     R+ K
Sbjct: 527 HEVANVVNLVHDEIVVEAKEDYKEEVSKLLEKSMKKAGSILLNNVKIETEIVINHRWTK 585


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 107/271 (39%), Gaps = 58/271 (21%)

Query: 416 AFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            F  PI++++K    R  GK+ ELALGY G      +M                      
Sbjct: 1   MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMG--------------------- 39

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A+   L       +   WR  +  + Q W D+ E     V+
Sbjct: 40  -------------------ALAMGLSEDELPGLVSTWRNANPHITQFWWDVDEAAVRAVR 80

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN---------TAT 584
           E           V  +  +     +  +LPS R+L Y   +   +               
Sbjct: 81  ERKETQ------VGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYG KL ENIVQ  SRDIL E M    K G+ IV  VHDE V E P+    SV
Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             +C +M + PSW  GLPL+A+GYE + Y+K
Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224


>gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana]
 gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
            thaliana]
          Length = 2154

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 91/739 (12%), Positives = 177/739 (23%), Gaps = 187/739 (25%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDE---------------------- 64
             I   A  W+  PV   +  +        +  + + D                       
Sbjct: 1500 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 1559

Query: 65   TVMCVA---------HNSLFERILFK-------KTLGIDIPSKRWICTSV-LARTNGLPS 107
             +  +           N   +  + K       +   +++  +      V  +     P 
Sbjct: 1560 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNL-PEGIRDELVDGSWLMMPPL 1618

Query: 108  ------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                   +      L   E           + +              R  +    ++   
Sbjct: 1619 HTSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQI-RRVAHN 1677

Query: 162  YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211
             C R V  TR L   L  +   E            L  +   +   G  ID++  L+ + 
Sbjct: 1678 GCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARN 1737

Query: 212  LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSIL 265
            ++  + + L++   +L             +   LF    + +        +   T K  L
Sbjct: 1738 ILRDKLRSLEKKAFELAGMTFSLHN-PADIANVLFGQLKLPIPENQSKGKLHPSTDKHCL 1796

Query: 266  SHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRTGRW 320
                       +I      +      L ++         +    L G      ++ TGR 
Sbjct: 1797 DLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQT-STATGRL 1855

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379
            S      Q                +    G  ++          R   +       L+ A
Sbjct: 1856 SIEEPNLQ--------SVEHEVEFKLDKNGRDVSSDADRYKINARDFFVPTQENWLLLTA 1907

Query: 380  DLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            D + IE R++A  + +   I   +  E D++    AK      D VS   R   K +   
Sbjct: 1908 DYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYG 1967

Query: 439  LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
            + Y  G                                                A + + 
Sbjct: 1968 ILYGMG--------------------------------------------ANRLAEQLEC 1983

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                 +   +++++    V     +                                   
Sbjct: 1984 TSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGY------------------------- 2018

Query: 559  HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
             I     RR   S +K   +   +   +  R+         ++ Q  + DI+   M N  
Sbjct: 2019 -IQTLKGRRRFLSKIKFGNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMINIY 2068

Query: 619  -----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654
                                   K    I+L VHDE+V E   +       L    M   
Sbjct: 2069 SAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENA 2128

Query: 655  PSWAKGLPLKAEGYEAKRY 673
             S    +PL  +    K +
Sbjct: 2129 VSLL--VPLHVKLKVGKTW 2145


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/779 (12%), Positives = 188/779 (24%), Gaps = 180/779 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDD---EPVKLWDRTEQSAMPS 55
            +D E      L + G         +T         +++D          D  +  A+  
Sbjct: 101 AVDTE-VDDIDLSREGP---VGNGRVTCFTVYSGPDFSYDGEAAGKALFVDCVDA-AVLD 155

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--------- 106
               +  DE+   V HN  F+R + +   G+         T  +AR +            
Sbjct: 156 VFAPWFADESRRKVWHNYGFDRHVVENH-GLACRGFA-GDTMHMARLHDSSRLRTHGGDG 213

Query: 107 SSLKNACLAL------------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            SL+     L             F E   K            + +               
Sbjct: 214 YSLEALSRDLISAGEAKVSMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDDA 273

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDG-------------------ERDLWL------ 189
               F  Y   D ++T ++   L    +                      D +       
Sbjct: 274 TRDAFVCYAAYDAKSTWQVHDALRRRLERQAWAPMTDDPPRSPETPKTMWDFYERYFVPF 333

Query: 190 --LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-------SSRQTYA 240
             +   +   G  +D    L   E  A   K       +              +   +  
Sbjct: 334 GKVLTDMEAAGIYVDAASHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSKQ 393

Query: 241 LRMYLF-----LITG--IDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           ++  LF       TG  ++            +L   +     +   L   +   +     
Sbjct: 394 IQTLLFGGAMNQKTGEYLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGLTPTKYT 453

Query: 293 NTLSEAVSSD------GRLRGTLQFYGASRTGRWS-----------------GCVFQPQN 329
            + + + ++D      GR       YGA+  G                    G +    N
Sbjct: 454 TSGAPSCTADVLRELAGRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMGSIDTMLN 513

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDC--------------VRSCIIASNGKK 375
                       ++    +           +                 +R    A  G  
Sbjct: 514 TFINPLRLLADDESRVHCSLNLNTETGRLSSRRPNLQNQPALEKDQYFIRKAFRAKEGCA 573

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LVVAD   +E R+LA +A  +  + AF  G   +  T    F+   + V        +  
Sbjct: 574 LVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAV--------ESG 625

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
            + L                  +           ++     +  +  +         A  
Sbjct: 626 AVLLEKGSSP------------EDSDKPLVKDVYASERRRAKTLNFSIAYGKTAHGLAKD 673

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +     + + +AW      V    K               +                 
Sbjct: 674 WGVKQEEAQDMLRAWYDDRPEVEAWQKRTIADAKRTGYTTTLM----------------- 716

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     RR    D+      L    ++               +Q  + D++   M 
Sbjct: 717 ---------GRRRNLPDILEKNRALQGRGARA---------AINTPIQGSAADVVMMAML 758

Query: 616 NATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGL-PLKAE 666
              +       GY ++L +HDE++ E P+    +    +  LM        GL PL  +
Sbjct: 759 KIAESKTLKDLGYTLLLQIHDEVILEGPEQHKEAALAEVTKLMEAPFD-GIGLDPLHVD 816


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 145/524 (27%), Gaps = 120/524 (22%)

Query: 168 EATRELFKRLIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             T +L  +L            E  L  +   +     +++ + + K   L+    K+L+
Sbjct: 39  RLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELE 98

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNI 270
           ++      G          LR  LF    +             + +   T+   L+    
Sbjct: 99  QEAH-FVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEALNALRD 157

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                 +IL            ++ L  A    G +  T    G + TGR S      Q +
Sbjct: 158 LHPLPKIILEYRQVHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGI 215

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            +               ++  TI+          R+  ++S G   + AD + IE R+L 
Sbjct: 216 SKHPIQITTPKNFKGKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILT 266

Query: 391 WIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            ++G+   +K F   E    + T  ++  + P+++V+   R   K +  A+ Y  G +  
Sbjct: 267 HLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERL 326

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                            +         +
Sbjct: 327 AAC--------------------------------------------LGVPIQEAAQFLE 342

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           ++  K++ +              + +                         +V    RR 
Sbjct: 343 SFLQKYKKIKDF-------ARAAIAQCHQTG-------------------CVVSIMGRRR 376

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNG 621
               +           +Q  R+          +VQ  + D+    M +            
Sbjct: 377 PLPRIHAHDQ---QLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLT 427

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
             +V  +HDE++ E  D        L     +     + +PLK 
Sbjct: 428 ARLVAQIHDELLFEVEDPQIPECAALVR---RTMESLEQVPLKV 468


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 131/500 (26%), Gaps = 121/500 (24%)

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L      +   G  +D   ++     +     ++  +I+    G I +      +   
Sbjct: 452 LPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGEILTYAGGPI-NLNSPKQVGEL 510

Query: 245 LFLITGIDLVD----MSEGTLKSILSHS----NITQLAKDLILNRLASSGSAILKLNTLS 296
           LF   G+ ++         T  S+L               L+L     S         L 
Sbjct: 511 LFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVPALLLEHRELSKMLSGFAVPL- 569

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            A S DG +  T +    + TGR S      QNLP                         
Sbjct: 570 AAASRDGVVHSTFE-AQTTGTGRLSSRDPNLQNLP------------------------N 604

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +  C+ A  G   V AD + IE RVLA ++GE    + F  G DI+  T A  
Sbjct: 605 YSELGGQLCRCLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMI 664

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
              P D V+KEQR + K +   L Y               L + Q               
Sbjct: 665 LGIPADSVTKEQRRMAKTVTFGLLYGMS-----AFGLADRLSVGQA-------------- 705

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                                        +  A+ A   GV +                 
Sbjct: 706 -------------------------EARGIMDAYFAALPGVREYVDATVAEARRRGYSQT 740

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           +    R                                 + +          R       
Sbjct: 741 AYGRIR------------------------------PLDEVATGRQTDRGHAR-----RV 765

Query: 597 LTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVS-ETPDTPYFSVGTLCSLM 651
              + VQ  + DI    M    +     G  +VL VHD IV   TP+        L   M
Sbjct: 766 AINSPVQGTAADITKMAMITVDRELAAAGVPMVLQVHDSIVCRTTPENAEPVGKKLAEFM 825

Query: 652 TKNPSWAKGLPLKAEGYEAK 671
           T        +PL  E    K
Sbjct: 826 TGAVK--LSVPLAVETKTGK 843


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/440 (12%), Positives = 111/440 (25%), Gaps = 117/440 (26%)

Query: 246 FLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           F    I +    ++     T + +L          + IL            ++ L   ++
Sbjct: 2   FDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLIN 61

Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +      + TGR S      QN+P                            
Sbjct: 62  PRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------------------------IRDE 96

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   I   G     AD + IE R++A ++ +   I AF +  DI+  T AK +  
Sbjct: 97  NGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKI 156

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
            +  V  + R   K                      G+ +   ++               
Sbjct: 157 DLKDVDSDMRRKAKTAN--------------FGIIYGISVFGLAER-------------- 188

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +     + +   +   + GV        +             
Sbjct: 189 ----------------MNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 232

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     R+    D+    + +     +             
Sbjct: 233 --------------------------RKRFLPDINSRNAVVRGYAERN---------AIN 257

Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653
             +Q  + DI+   M    +          ++L VHDE+    P      V  +      
Sbjct: 258 APIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE-EM 316

Query: 654 NPSWAKGLPLKAEGYEAKRY 673
             ++   +PLKA+    K +
Sbjct: 317 EKAYRMHVPLKADCGWGKNW 336


>gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated
           bacterium]
          Length = 206

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 187/204 (91%), Positives = 192/204 (94%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MSKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY
Sbjct: 1   MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
           HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL
Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
           +  ER LWLLDQ INDRGYRIDLD
Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLD 204


>gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001]
 gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001]
          Length = 631

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/702 (13%), Positives = 189/702 (26%), Gaps = 131/702 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAM-PSDLL 58
            ++  D+ET     L   G         I    +A D  P             +  + +L
Sbjct: 27  RRVAFDLETY-DPHLKDTGPSVRTG-GHIAGYGFAIDGGPKHYLPVRHENGDNLDAAQVL 84

Query: 59  QYLRDE----TVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLP---SSLK 110
           +Y++D+        V  N  ++   +    GID+P  K +    +            SL 
Sbjct: 85  RYIKDQFKTFDGELVGANLGYDLD-WAWAEGIDMPLVKAYRDVLIAEPCINENKFFYSLD 143

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +        E  +K    +A  A   +   +   Y      H+   +  G Y + D    
Sbjct: 144 SVAGD-WLGEQKSKTLMIEAARAYGMRKDSELGSYI-----HLLPARYVGVYGEDDCALP 197

Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
             + +      +          E  +  +   +  RG ++D D +++++    +ER+   
Sbjct: 198 LRILELQEKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDAS 257

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           + I ++T   +          +   L      ++  +   K  ++           +   
Sbjct: 258 DLITRVTGVAVGPEDAMKKGILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTAALGRL 317

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA----------SRTGRWSGCVFQPQNLP 331
                   L ++ +   +  +GR+  +     A          +R GR S      Q  P
Sbjct: 318 RKWDTLRKLAIDPVKNHMV-NGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNMQQQP 376

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            ++                          +   R      +G      D +  E R+L  
Sbjct: 377 SRDED-----------------------IAPIWRRIYRPDDGGLWAALDYSQQEPRMLVH 413

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            A       A +     Y        +  +  ++   R   K++ L L Y  G +     
Sbjct: 414 FAEICGMPGA-SEAAQKYRDDPDTDNHQMMADMAGISRKEAKIIFLGLCYGMGQEKLCH- 471

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L  +                           + P    K  + G     + + + 
Sbjct: 472 --DLQLPTKIIE----------------------LKKGPRKGQKMVVAGDEGARLFETFH 507

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           AK        K +         E G                       I     RR  + 
Sbjct: 508 AKVP----FVKQMENLCKDRATERG----------------------FITTLLGRRCRFK 541

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
                 +Y  T             K    ++Q  S D     M  A + GY++ L VHDE
Sbjct: 542 MGDDGLNYWGTH------------KALNRLIQGSSADQTKAAMVAADEAGYELQLQVHDE 589

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           I              +  +M         +P K +      +
Sbjct: 590 IDLTV--ESREQAEKIAEIMRTCVE--INVPSKVDVEVGVSW 627


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/651 (12%), Positives = 176/651 (27%), Gaps = 137/651 (21%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLART 102
                    L Q L+ +    +  N+  F R + +     G       ++     + A  
Sbjct: 298 AHSQFARDVLFQILKCK-CPVICFNAKDFVRTVLQFFGDDGSWKHVADFVGLDPRIAAWL 356

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGE 161
                   +A           +    K L          +         N      L   
Sbjct: 357 IDPS----DAA-------PSFEDLVAKYLENSITVKVSSTYGNSSRNIVNQNVCANLRIL 405

Query: 162 Y-CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           Y     + +  +++         E  L  +   +     +++ D + +   ++    K+L
Sbjct: 406 YRLTMGLCSQLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMERTSAVLGSRLKEL 465

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMSE----GTLKSILSHSN 269
           +++      G          LR  LF    +        L          T +++L+   
Sbjct: 466 EQEAH-FVAGEQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHLSTSEAMLNVLQ 524

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  +IL            ++ L  A    G +  T    G + TGR S      Q 
Sbjct: 525 NFHPLPKIILEYRQVHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKRPNIQG 582

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           + +               +   TI+          R+  ++S G   + AD + IE R+L
Sbjct: 583 ISKHPIQITKPQNFKGKEDDILTISP---------RTMFVSSEGHTFLAADFSQIELRIL 633

Query: 390 AWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           A ++G+   +K F   E    + T  ++  + P + V+  +R   K +  ++ Y      
Sbjct: 634 AHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVY------ 687

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G   ++ +                                  +         
Sbjct: 688 --------GAGKERLAAC------------------------------LGVTVQEAARFL 709

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           + +  K++ +    +                            + R  +  ++     RR
Sbjct: 710 E-FLQKYKKIKDFAQA--------------------------TIARCHQTGYVASIMGRR 742

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------- 620
                ++          +Q  R+          +VQ  + D+    M +           
Sbjct: 743 RPLPRIRAQDQ---QLRAQAERQA------VNFVVQGSAADLCKMAMIHIFAAVATSPTL 793

Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT-----KNPSWAKGLPLKA 665
              +V  +HDE++ E  D+       L    M      +       +PLK 
Sbjct: 794 TARLVAQIHDELLFEVEDSQVPEFSALVRGTMESLQHVQALELQLQVPLKV 844


>gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio]
 gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio]
          Length = 1146

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/619 (11%), Positives = 163/619 (26%), Gaps = 137/619 (22%)

Query: 77   RILFKKTLGI---DIPSKRWICTSVLARTNGLPSSLK----NACLALNFSEHLTKMEEGK 129
            R + +    +    +   + +   + A       S                  T +    
Sbjct: 610  RTVLRHFRDLSWTQVLGCQVMDPQIAAWLLDPADSSSCFQTLLSKHYTHQFTPTTL---- 665

Query: 130  ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
                   +  ++        +N     +L  E   +    T+ L++     S  E+ +  
Sbjct: 666  -------QPVLEQAKVTQVISNLSLLHKLMEELHYKLR--TQGLWQL---YSGIEQKMIP 713

Query: 190  LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
            +   +      +D + + K  E++  + K+L+++  +           +  LR+ LF   
Sbjct: 714  VLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQKFL-VSSSAQLRLILFEKL 772

Query: 250  -------GIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
                      L    +    T ++ L           +IL            ++ +    
Sbjct: 773  RLHELCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQIHKIKTTFVDGILSCT 832

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
                 +  T     ++ +GR S      Q LP+               +   T+      
Sbjct: 833  RKT-FISSTWNQT-STVSGRLSAKHPNFQALPKLPLQISKKQYIHGKASDIVTVHP---- 886

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFN 418
                 R+  I   G   + AD   +E R+LA ++ +   ++ F + E D +    A+   
Sbjct: 887  -----RAMFIPREGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKG 941

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               D+VS E R   K +  ++ Y  G +                                
Sbjct: 942  VSEDRVSLEDREQAKRIVYSVVYGAGRERLSG---------------------------- 973

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                               +        + ++   ++ V    +                
Sbjct: 974  ----------------ILGVSAEEASRFQDSFLKTYREVPAFIQ---------------- 1001

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                        ++  +    +     RR     +      L    +Q  R+        
Sbjct: 1002 ----------HTIQHCQSHGFVRSIMGRRRFLPHIHSADWSLR---NQAERQA------V 1042

Query: 599  ENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651
              ++Q  + D+    M               +V  +HDE++ E   +       L    M
Sbjct: 1043 NFVLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQLDQFAALVKKTM 1102

Query: 652  TKN--PSWA---KGLPLKA 665
                   +      +PLK 
Sbjct: 1103 ESLQHIEYLNVNLSVPLKV 1121


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 149/524 (28%), Gaps = 126/524 (24%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            LF      D   TR   + L  + +G +  L  +   +   G R+D      LQE +A 
Sbjct: 427 ALFRLRQGLDAAMTR--HQGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAA 484

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG-----IDLVDMSEGTLKSILSHSN- 269
             + ++  + +   G   +      +   LF+  G              T  ++L H   
Sbjct: 485 RIRAIEAQV-EDMAGTAVNLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLAR 543

Query: 270 -ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   L+L     S      +  L +A      +  T      + TGR S      Q
Sbjct: 544 LPGGEVPALLLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQ 603

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEAR 387
           N+P                          G  ++ ++  ++    G   V AD + IE R
Sbjct: 604 NIP------------------------AFGQWAERIKQGLVPVREGNVFVAADYSQIELR 639

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA ++ E   ++AF NG DI+  T +  F+   + V+ E R +                
Sbjct: 640 VLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRVA--------------K 685

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G+                                   A +  +      ++ 
Sbjct: 686 MINFGLLYGMS------------------------------AFGLAERLDMPRGEASMIV 715

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           K +     GV    KD+ +                                     + R 
Sbjct: 716 KRYFEALPGVQSFLKDIVKEAHAAG--------------------------FARTLAGR- 748

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GY 622
                   + +        L R       L    +Q  + DI  + M +  +        
Sbjct: 749 ---IRPVDEVTA--QGRGGLDRV------LVNTPIQGTAADIARKAMVDFDRAFRHDGEV 797

Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
            + L VHD +V E P      VG  L  +M    +    LPL+ 
Sbjct: 798 RLFLQVHDSLVCECPAARAEEVGHSLREIMMNAAT--LSLPLEV 839


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/540 (17%), Positives = 163/540 (30%), Gaps = 99/540 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITL-CAYAWDDEPVKLWDRTEQSAMP------- 54
           ++  D+ET         GV  + +   I      A   +         ++ +P       
Sbjct: 136 EIVFDVETT--------GVDVWND--YIVGHVITAIKADVHAYIPTRHKTILPQLSRDLV 185

Query: 55  -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLK 110
              L  +  D TV  +AHN+ F+  +  +  GI +    W  T    R         +LK
Sbjct: 186 NETLRPFYEDPTVGKLAHNAKFDIHMLDR-EGIKLRGLTW-DTQEAMRLLNENEPSFALK 243

Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           N     L           GK  I                        ++   Y  +D + 
Sbjct: 244 NLVTKYLRIESSTYGDLFGK--IGFDEV----------------DDLEIALAYAAKDGDV 285

Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           T +L                     E  L  + Q +   G+ IDLD   +    +     
Sbjct: 286 TLKLRNFQREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRELKSGLD 345

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           +L +++++       +      L+  L  +TG     ++    K +L            +
Sbjct: 346 RLYDELIEELGD--VNINSPAQLKPALERVTG---ESLASTDAKKVLKPLAKKYPVVKKL 400

Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSG-CVFQPQNLPRQERS 336
           L    S       +N L E +    G+L       GA      SG      QN P++   
Sbjct: 401 LEYKDSFKLYSTYINALPELIDQKTGKLYTNFNPNGAKTGRFSSGGTGVNLQNQPKKA-- 458

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                       R   +A  G  ++  D +  E R LA+   + 
Sbjct: 459 ----------------------------RKLFVAPEGYAILGGDWSQQEYRCLAYFTQDP 490

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASH 454
             +  +  G+D+Y +  A+ F  PI++       R   KV+ LA+ Y GGA + K     
Sbjct: 491 KLVDNYFRGDDLYASIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLKD---- 546

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK-DKLIGTACELVKKAWRAK 513
             + +++        S FE +   +      Q    +        +     L     R+ 
Sbjct: 547 -AIGVEKHEAQKFLDSFFERFPVVKEWVESNQKFVKKHGFVWMDHLQRKRRLPDAKDRSA 605


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/264 (39%), Positives = 150/264 (56%), Gaps = 3/264 (1%)

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDC 147
           P +RW  T V A  +GLP SL   C  L   +   K +EGKALI  FCK    +S     
Sbjct: 7   PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--ERDLWLLDQTINDRGYRIDLDL 205
           T   H + W+ F  Y   D+EA RE++ RL   +    E  LW  DQ INDRG  +D+ L
Sbjct: 67  TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                E + QE+K+L +   ++TDG ++++ Q  AL  ++    G++L DM   TL+  +
Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           ++ ++    K+L+  RL +S ++  K   L + VS DGRLRGTLQF GASRTGRW+G +F
Sbjct: 187 ANPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLF 246

Query: 326 QPQNLPRQERSEEILTQTIQALNR 349
           QPQNLPR    +E + + I+A N 
Sbjct: 247 QPQNLPRPSLKQEQIDEGIEAPNA 270


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/660 (13%), Positives = 186/660 (28%), Gaps = 130/660 (19%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A A       +        + + L ++L+ E    + H    E +     + +D+    
Sbjct: 404 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460

Query: 93  WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              T +          + SLK A             +  +  +        + P     R
Sbjct: 461 MFDTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 520

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
              +            D    RE    +  +   E  +  +   +   G ++D   ++ +
Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265
           ++  A E ++  E   +     I + +    L+  LF   G+     ++     T  + L
Sbjct: 575 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633

Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316
                              L+ +R  +    I  + TL +A + SD R+  T +   A  
Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375
           TGR S      QN+P                            A   +R   +   G + 
Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+  D + +E R++A ++G++  I+AF +G D +    +  +  P+D+++ +QR+  K M
Sbjct: 727 LMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
              L Y        T      L +            F+ + +   +   +     E    
Sbjct: 787 SYGLAYG-----LSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYT 841

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
           + + G          R     +    +                       V R    R  
Sbjct: 842 ETIFGR---------RRYFPALHSTNR-----------------------VAREAAERAA 869

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
            +  I   ++  +  + ++ + +                              I+     
Sbjct: 870 LNAPIQGSAADIMKIAMIRAEQTLAEAHVKS---------------------CII----L 904

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
                           +V E        V  L    M      A  +PL         ++
Sbjct: 905 QIHDE-----------LVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDWQ 951


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/648 (13%), Positives = 164/648 (25%), Gaps = 165/648 (25%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLPSSLKNACLALNF 118
               V  N+  F R +  +  G D   K           V A                  
Sbjct: 314 KCPVVCFNAKDFVRTVL-QLYGEDDSWKHVADFVGLDPRVAAWLIDPSD----------- 361

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRL 177
           +    +    K L          +                    Y     + T +L  +L
Sbjct: 362 TAPSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKL 416

Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                       E  L  +   + +    +D + + +   L+    K+L+++      G 
Sbjct: 417 KAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGE 475

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILN 280
                    LR  LF    + L+   +            T +++L+          LIL 
Sbjct: 476 QFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILE 535

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S S+                        G + TGR S      Q + +        
Sbjct: 536 YRQGSISST-------------------WNQTG-TVTGRLSAKHPNIQGISKHPIKISKP 575

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                      TI+          R+  ++S G   + AD + IE R+LA ++G+   +K
Sbjct: 576 WNFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 626

Query: 401 AFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            F   E    + T  ++  + PI++V+   R   K +  ++ Y  G +            
Sbjct: 627 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC------- 679

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                                  +         + +  K++ + 
Sbjct: 680 -------------------------------------LGVTVLEATHFLERFLQKYKKIK 702

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              + +             +                           RR     +     
Sbjct: 703 DFAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ 736

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDE 631
                 +Q  R+          +VQ  + D+    M   +            +V  +HDE
Sbjct: 737 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 787

Query: 632 IVSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673
           ++ E  DT       L   +M      +       +PLK      + +
Sbjct: 788 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 835


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/535 (13%), Positives = 136/535 (25%), Gaps = 120/535 (22%)

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLD 204
                             K D+ +    ++ L   + D E  L  +   +   G  ++ +
Sbjct: 416 AAESIADPVEIAGQLWRVKNDLSSNIAQYQGLDKLMRDVEIPLIPVLWRMETWGIGLNRE 475

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----- 259
               L   +     ++++ I +   G   +      +   LF    +  +  ++      
Sbjct: 476 SFNGLDSDLEIRIVEIEDTIAEKG-GERINLNSPKQVAWLLFEKLNMPPIKETKTGYSTD 534

Query: 260 --TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
              L+ ++      +   +LIL     S      ++ L  A   +  L        ++ T
Sbjct: 535 VTVLEELVKMGLPEKEVPELILEHRELSKMRSGFVHPLVSAADENTDLIHGTFESTSTGT 594

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR S      QNLP   +    L + +                           +G   V
Sbjct: 595 GRLSSRDPNLQNLPAFGQWSTRLKEGLVPHK-----------------------DGNIFV 631

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
            AD + +E RVLA +  E    +AF    DI+  T +  FN     V+ E R   KV   
Sbjct: 632 AADYSQVELRVLAHLCDEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRFAKV--- 688

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                             G+     +  +                               
Sbjct: 689 -----------VNFGLLYGMSSFGLASRL------------------------------G 707

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +       +   +      V    +   +               R  +   +  R     
Sbjct: 708 IGQQEAGDIINRYFRALPKVRDYIEKSYQDARKRGYAVTDFGRIRPLDEVSVNPRDRGAL 767

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             I                                         +Q  + DI    M   
Sbjct: 768 KRI------------------------------------AVNTPIQGTAADIARMAMIKF 791

Query: 618 TK-----NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAE 666
            K         +VL +HD +V E       + V  L  +M    +    +PLK E
Sbjct: 792 YKHFEKRQNVHLVLQIHDSLVCECAAEEKEAVVKDLTDIMESAAT--LSVPLKVE 844


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 141/420 (33%), Positives = 194/420 (46%), Gaps = 56/420 (13%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLAS 361
           +    +F  +  TGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S
Sbjct: 9   IPYRCRFPISLYTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTS 68

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI------------- 408
             +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF + +               
Sbjct: 69  SALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAI 128

Query: 409 ---------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
                                      Y   YA +F      V+K+QR IGKV ELALGY
Sbjct: 129 THGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGY 188

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            GG   F   A+   +DL+  ++            +A     W +               
Sbjct: 189 GGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLSDRAWL 246

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           AC++ K+AWR  H  +   WK L       ++   +           + M+  +  + + 
Sbjct: 247 ACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMH 301

Query: 562 LPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M 
Sbjct: 302 LPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMP 361

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 362 AIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 140/420 (33%), Positives = 193/420 (45%), Gaps = 56/420 (13%)

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLAS 361
           +    +F  +  TGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S
Sbjct: 9   IPYRCRFPISLYTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTS 68

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI------------- 408
             +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF + +               
Sbjct: 69  SALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAI 128

Query: 409 ---------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
                                      Y   YA +F      V+KEQR IGKV ELALGY
Sbjct: 129 THGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGY 188

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            GG   F   A+   +DL+  ++            +A     W +               
Sbjct: 189 GGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLSDRAWL 246

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
           AC++ K+AWR  H  +   W+ L       +    +           + ++  +  + + 
Sbjct: 247 ACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRAWLRLR 301

Query: 562 LPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
           LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M 
Sbjct: 302 LPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMP 361

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
                GY IVLTVHDE+++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 362 AIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 82/629 (13%), Positives = 164/629 (26%), Gaps = 125/629 (19%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
               +  N+  F RI+  +  G +   K           + A          S ++    
Sbjct: 376 KCPVICFNAKDFVRIVL-QFFGNNGSWKHVADFVGLDPRIAAWLIDPSDAAPSFEDLVEK 434

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+       +R                  +       +Y    +  T EL  
Sbjct: 435 YCDKSITVKVSSTYGNSSRNIVNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLEL-- 492

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                      L  +   +     +++ + + K   L+    K+L+++      G     
Sbjct: 493 ----------PLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAH-FVAGEQFLI 541

Query: 236 RQTYALRMYLFLITGID-------LVDMS----EGTLKSILSHSNITQLAKDLILNRLAS 284
                LR  LF    +                   T +++L+          +IL     
Sbjct: 542 MSNNQLREILFGKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQV 601

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                  ++ L  A    G +  T    G + TGR S      Q + +            
Sbjct: 602 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFK 659

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
              +   TI           R+  ++S G   + AD + IE R+LA ++G+   +K F  
Sbjct: 660 GKEDEILTICP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 710

Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            E    + T  ++  + P++ V+   R   K +  ++ Y  G +          L +   
Sbjct: 711 SERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAGKERLAAC-----LGVPVQ 765

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                  S  + +++ +        Q  +      ++G    L           +    +
Sbjct: 766 EAAQFLESFLQKYKKIKDFAQAAIAQCHQTGYMVSIMGRRRPL---------PRIHARDQ 816

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            L               +                          +L    V    +  +T
Sbjct: 817 QLQAQAERQAVNFVVQGSAADLC---------------------KLAMIRVFAAVAASHT 855

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
                                  +R                +V  +HDE++ E  D+   
Sbjct: 856 L---------------------TAR----------------LVAQIHDELLFEVEDSQIP 878

Query: 643 SVGTLC-SLMT-----KNPSWAKGLPLKA 665
               L    M      +       +PLK 
Sbjct: 879 ECAALVRRTMESLEQVQVLELQLQVPLKV 907


>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2147

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/742 (11%), Positives = 174/742 (23%), Gaps = 192/742 (25%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDE---------------------- 64
             I   A  W+  PV   +  +        +  + + D                       
Sbjct: 1492 EIHGIAICWNSSPVYYVNLNKDLPNLECVEKQKLIEDAVVGKNEVLATHNMFDVIKSRWN 1551

Query: 65   TVMCVA---------HNSLFERILFK-------KTLGIDIPSKRWICTSVL----ARTNG 104
             +  +           N   +  + K       +   +++  +      +     +    
Sbjct: 1552 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCNRLNLA-EGIRD--LELVDGSWLMM 1608

Query: 105  LPS------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
             P        +      L   E           + +              R  +    ++
Sbjct: 1609 PPLRTSHTIDMSIVTWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQI-RRV 1667

Query: 159  FGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLK 208
                C R V  TR L   L  +             E  L  +   +   G  +D++  L+
Sbjct: 1668 AHNGCCRRVAQTRALCSALWKILVSEELLEALTTTEMPLVNVLADMELWGIGVDIEGCLR 1727

Query: 209  LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLK 262
             + ++  + + L++   +L             +   LF    + +        +   T K
Sbjct: 1728 ARNILRDKLRSLEKKAFELAGMTFSLHN-PADIANVLFGQLKLPIPENQSKGKLHPSTDK 1786

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRT 317
              L           +I      +      L ++         +    L G      ++ T
Sbjct: 1787 HCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQT-STAT 1845

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376
            GR S      Q                     G+ +           R   +       L
Sbjct: 1846 GRLSIEEPNLQ--------SVEHEVEFILDKNGKDVNSDADSYKINARDFFVPTQENWLL 1897

Query: 377  VVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R++A  + +   I      E D++    AK        VS   R   K +
Sbjct: 1898 LTADYSQIELRLMAHFSRDSSLISQLRQPEGDVFTMIAAKWTGKAEGSVSPHDRDQTKRL 1957

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y  G                                                A +
Sbjct: 1958 IYGILYGMG--------------------------------------------ANRLAEQ 1973

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +      +   +++++    V     +                                
Sbjct: 1974 LECSSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGY---------------------- 2011

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                I     RR   S +K   +   +   +  R+         ++ Q  + DI+   M 
Sbjct: 2012 ----IQTLKGRRRFLSKIKFGNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMI 2058

Query: 616  NAT-----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651
            N                         K    I+L VHDE+V E   +       L    M
Sbjct: 2059 NIYSAIAEDVDTTASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKVAAMLLQTSM 2118

Query: 652  TKNPSWAKGLPLKAEGYEAKRY 673
                S    +PL  +    K +
Sbjct: 2119 ENAVSLL--VPLHVKLKVGKTW 2138


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/489 (15%), Positives = 144/489 (29%), Gaps = 118/489 (24%)

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +  +G++ID+    +L++    E K L+  I+ L      +      L   L+   G+
Sbjct: 1   MGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGL 59

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
              + S  T +  L        +  LIL     +         L      D ++  T   
Sbjct: 60  P-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQ 118

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            G + TGR S      QN+P                                +R   IAS
Sbjct: 119 TG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIAS 153

Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                L+  D + IE R+LA  + +   ++AF  G DI++ T    F    + ++KE+R+
Sbjct: 154 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 210

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           I K +                    G+                                 
Sbjct: 211 IAKSINF--------------GLVYGMGS------------------------------K 226

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           + +    +     +   +A+  +   +      + E      +    +   RV +   + 
Sbjct: 227 KLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVFDFNGVN 286

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                  +                                          I Q  + D+L
Sbjct: 287 DYVKGNYLREG------------------------------------VNAIFQGSASDLL 310

Query: 611 CEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLK 664
             GM   ++         ++L VHDE++ E  +     +   +  ++     +   +PL+
Sbjct: 311 KLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLE 369

Query: 665 AEGYEAKRY 673
              + AKR+
Sbjct: 370 TSAFIAKRW 378


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/663 (11%), Positives = 173/663 (26%), Gaps = 148/663 (22%)

Query: 50   QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----------DIPSKRWICTSVL 99
              A+   L ++L+  + + V H+         K LG+          +      + T + 
Sbjct: 469  DRALLEMLRKFLQKNSSITVLHDYK-------KHLGLLKSLKLFDSNNSFGTPLLDTRLA 521

Query: 100  ARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            +          +L+N            +   G+    +     +       +   + +  
Sbjct: 522  SYLLEPDFRAETLENMAEHY-LDIQSDEDNLGENEAKQGELDLLIDDETPASEEENNEKQ 580

Query: 157  QLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDL 205
                E           L                 ++D E  +  + + + D G  +D+  
Sbjct: 581  TQAREAKFLRTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQR 640

Query: 206  VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTL 261
            +  + +  + +  +  +++     G   + +    L+  LF   G+     ++     T 
Sbjct: 641  LSGMLKQFSAD-AEFAQNMAWKVAGSSVNLQSPKQLQQILFEHFGLKPTRRTKNGSYTTN 699

Query: 262  KSILS--------HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
               L             +Q    L+ +R  +    I  + +L +A   D R   T     
Sbjct: 700  AEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI--VQSLIDAAHYDDRRIHTTFEQT 757

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
             + TGR S      QN+P                            A   +R+  I    
Sbjct: 758  IAATGRLSSADPNLQNIP------------------------NRNAAGREIRAAFIPGEE 793

Query: 374  KK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
             + L+  D + +E R++A  + +   I+AF +G D +    +  +  P+++V+ +QR+  
Sbjct: 794  FEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHV 853

Query: 433  KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            K M   L Y        T      L +      +     F+ +     +   +  +  E 
Sbjct: 854  KAMSYGLAYG-----LSTYGLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKEL 908

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
               + + G          R     +    +   E                          
Sbjct: 909  GYTETMFGR---------RRYFPQLSSNNRASREAAERGALNAPIQGTAADI-------- 951

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                 + + L    R      +                                      
Sbjct: 952  MKLAMLRVDL--GLREAKVRSRV------------------------------------- 972

Query: 613  GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
             +         ++L        E        V  +    M         +PL        
Sbjct: 973  -ILQIHDE---LIL--------EISHGEQEQVENIVRKAMENAVH--LDVPLNVSTGVGV 1018

Query: 672  RYR 674
             ++
Sbjct: 1019 DWQ 1021


>gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening
           disease-associated, Peptide, 207 aa]
          Length = 207

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 186/203 (91%), Positives = 191/203 (94%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           SKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQYL
Sbjct: 3   SKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYL 62

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F EH
Sbjct: 63  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEH 122

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           LTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL+
Sbjct: 123 LTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLN 182

Query: 182 DGERDLWLLDQTINDRGYRIDLD 204
             ER LWLLDQ INDRGYRIDLD
Sbjct: 183 PEERTLWLLDQEINDRGYRIDLD 205


>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
          Length = 1937

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/675 (13%), Positives = 178/675 (26%), Gaps = 109/675 (16%)

Query: 10   TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPSDLLQYL 61
            T   + L K   + +  +  I   A +W+         +         +  +   L + L
Sbjct: 1339 TEKKRKLKKSVNYIHGRK-EIRGAAISWESNIAYYISFSNTQDAKISTKEQIT-LLKELL 1396

Query: 62   RDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKNACLALNF 118
             D  +         +   L  +   I     R++   +     TN    +         F
Sbjct: 1397 SDAALYVKCFAIK-DTYKLLYRCCAISAK-CRFLDPVIAHWLYTNDFEGNFSELVTQY-F 1453

Query: 119  SEHLTKME-------EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
             +    M+        G  +  +           +     H+             V    
Sbjct: 1454 PQGNFIMKRTNSCCNVGPGMDVQNSLPGEFRSAAEAVLTWHMTDSITSKLEELNPV---- 1509

Query: 172  ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                 L    D E  +  +   +   G  ++L  + +   +I  E + L+     L    
Sbjct: 1510 ----LLHTFRDIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAGRK 1565

Query: 232  IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
              +   +  +   L L     +   S+  L+              L+++    + +    
Sbjct: 1566 F-NLSSSKEVGQVLGLYKDKKV-STSKAVLEK------CDNPISRLVISWRKLNATKTKI 1617

Query: 292  LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            +  L      D R+ G       + TGR S      QN+P+                   
Sbjct: 1618 VYPLLNLSQEDSRIHG--NCITCTVTGRVSMHEPNLQNVPKD------------------ 1657

Query: 352  TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                        VR   + + G  ++ AD   +E R+L   + +    +      DI+ +
Sbjct: 1658 -FHFEDNNLLVSVRRSFVPALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFKS 1716

Query: 412  TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
              AK  N   ++V+ E R   K +   + Y  G K          L + +        S 
Sbjct: 1717 IAAKWNNVIEEEVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISETEAQHFLESF 1771

Query: 472  FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
               +           ++         L+G          R +   +              
Sbjct: 1772 MNAYPGIYKWLDDTLEKAHHNGYVTTLLGR---------RRQLPDLRSTKSSTRAQAERQ 1822

Query: 532  VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                    +        +++   K           R  + D           T +L R  
Sbjct: 1823 AVNTKVQGSAADIVKKAMIIIEEK----------MRHSFPDSVI-VFPETQGTRKLRRN- 1870

Query: 592  TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL- 650
                          SRD+L        + G  +VL +HDE++ E        V  +    
Sbjct: 1871 --------------SRDML--------QRGGYLVLQLHDELLYEVNSADLKEVAIIIKES 1908

Query: 651  MTKNPSWAKGLPLKA 665
            M         LP+K 
Sbjct: 1909 MEDVCQLTVPLPVKV 1923


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 104/680 (15%), Positives = 194/680 (28%), Gaps = 166/680 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLR 62
           L +D ET         G+  Y+      L  +    E   +    +   +   ++ + L 
Sbjct: 38  LAVDTETT--------GLDIYSADFRCRLVQFGTQTESW-VLPIEDLEMLGREEVHEALD 88

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112
                 V  N+ ++  +  +  GI +     + + T +LA+              SL+  
Sbjct: 89  VLN-KIVMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPRPFGAGGFGHSLEEL 147

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                  E     E  K L+A+  K    +       +        +  Y   D   T  
Sbjct: 148 IAEFISKEQA---ENVKGLMAKLAKEHKTT--KAKIWSTIDLYHPEYLTYAGMDTVFTAR 202

Query: 173 LFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   L         PL   E  +  +   I+ RG+ +D++   +L +    E++  +  +
Sbjct: 203 ICSALAPLVPDVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLADKWLGEQQVWEAVL 262

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLAKD 276
           +        ++ +  A     F   G             + +G    +++         +
Sbjct: 263 LNEYGIEKVNATEDVAEA---FEELGHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAE 319

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           ++             + T  +   S+ R    +    A RT R S      Q LP  +  
Sbjct: 320 MVQEAKKLGKWRTSWVQTFLDTRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDW- 377

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G  +   D    E RVLA ++G+ 
Sbjct: 378 --------------------------TVRRCFLADPGHVMASIDYQAQELRVLAALSGDR 411

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF +G D+++ T   AF   I K   E                             
Sbjct: 412 TMIQAFKDGADLHLMTARAAFGDHITKDDPE----------------------------- 442

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +  +            A +  +     + V   +   + G
Sbjct: 443 ----------------RKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPG 486

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V +  + L                                   I+ P  RRL        
Sbjct: 487 VTRYSRKLANEAKRNGY--------------------------IINPMGRRLPVD----- 515

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVS 634
                       R RTY        +Q+ SRD+ C+ +    + G+   + L +HDEIV+
Sbjct: 516 ------------RSRTY--SALNYQIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVA 561

Query: 635 ETPDTPYFS-VGTLCSLMTK 653
             P          +  LM +
Sbjct: 562 SLPAEKANWGAREIARLMAE 581


>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
 gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
          Length = 2215

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/721 (12%), Positives = 188/721 (26%), Gaps = 131/721 (18%)

Query: 8    IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDE 64
             ET   +   K     YA        A A+  + +      ++        ++   L   
Sbjct: 1549 FETFVAEWKTKT---NYA-------IAVAYTTDEMIPPPLDDRLPVEERLHNIKSVLEKG 1598

Query: 65   TV--MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE-- 120
             V    V  +   +        GI +    +    V        + +K+           
Sbjct: 1599 DVCSSQVLFDLKPQYKALALGCGITMNGD-FEDPKVADWLLDPGAKVKS-----FHGTVQ 1652

Query: 121  --HLTKMEEGKALIARFCKGSIDSPPYD---CTRANHVQAWQLFGEYCKRDVEATRELFK 175
                 +    + L   F  GS+     +         ++    F    + D     +   
Sbjct: 1653 RFTPQESYLLQGLGGCFGVGSLAMTVQNSGSGRMRAALECVLTFHMMEELDKLLEAQGLS 1712

Query: 176  RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                  D E    +    +   G            +++  + + L+E   +L      + 
Sbjct: 1713 TAFR--DVEMPSLVTLARMELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLAGHTF-AL 1769

Query: 236  RQTYALRMYLFLITGID-----------LVDMSE---------------GTLKSILSHSN 269
                 +   LFL   +                +                 T K +L    
Sbjct: 1770 TSPDDIAQVLFLELKLPANGDPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLK 1829

Query: 270  ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL---RGTLQFYGASRTGRWSGCVFQ 326
                   +IL     S S    +  L +    + RL   R        + TGR +     
Sbjct: 1830 KFHALPGVILEWRRISNSLTKVVFPLQKEKVYNPRLNMDRIYGNCDLHTATGRVTFHDPN 1889

Query: 327  PQNLPRQ--------------------ERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
             QN+P+                         +      +   R           S  +R 
Sbjct: 1890 LQNIPKDFEIEMPTIIGDSPPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRH 1949

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
              I   G  L+ AD + +E R++A ++ +    +   +G+D++    ++     ++ VS 
Sbjct: 1950 AFIPFQGGVLLAADYSQLELRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSD 2009

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            + R   K +   + Y  GAK          L + +        +    +     +     
Sbjct: 2010 KLRQQAKQLCYGMIYGIGAKALGE-----QLGVDEEEGACFIETFKSKYTGMRRYLHTTV 2064

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT-EGFACVVQEGGSISARRVAN 545
            DQ  +      + G          R    G+ +    +        V      SA  +  
Sbjct: 2065 DQCKKDGFVQTMAGR---------RRYLPGITEGNHHVRCHAERQAVNTTVQGSAADLVK 2115

Query: 546  VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
               + + +  + +    P++RR    D +         +S                    
Sbjct: 2116 KAMVSIDQKLQKLF---PATRRSHRQDTQKRSRRSQQPSSPP------------------ 2154

Query: 606  SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664
                           G  ++L +HDE++ E        V  +    M      +  LP+K
Sbjct: 2155 --------------RGAYLILQLHDELIYEVRREDVQQVAQIVKHEMENAVKLSVVLPVK 2200

Query: 665  A 665
             
Sbjct: 2201 V 2201


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%)

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                T + A+                      K+     ++ RF    +D        +
Sbjct: 194 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 239

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201
                 Q    Y  RD      L +R         L  + D E         +   G +I
Sbjct: 240 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245
           D     +L+  + +E +K  + +           +      +   L              
Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358

Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289
                    F    +     +      +L  ++           A   + +   ++ +  
Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 418

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L E ++S  G++  +L   GA   GR+S      Q +PR+               
Sbjct: 419 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 462

Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           R+C +         G K ++AD + IE R+ A +A ++  I+A+
Sbjct: 463 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 508

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GED++  T +   N P   +SK  R + K +   L Y   A  F+  AS         
Sbjct: 509 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 560

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A   ++           + + + G+ +  +
Sbjct: 561 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 590

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                     ++      R                                         
Sbjct: 591 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 616

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                        K     +Q  S DI  E +          G  +V+ VHDEI++E P+
Sbjct: 617 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 663

Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
                 +  L   M      + + +P  AEG  A  +
Sbjct: 664 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 6  IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62
          +D+ET    P            A I L   A  D P  L+D       S     +   L 
Sbjct: 3  VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52

Query: 63 DETVMCVAHNSLFERILFK 81
             +  V HN  F+     
Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%)

Query: 91   KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                 T + A+                      K+     ++ RF    +D        +
Sbjct: 2069 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 2114

Query: 151  NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201
                  Q    Y  RD      L +R         L  + D E         +   G +I
Sbjct: 2115 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 2173

Query: 202  DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245
            D     +L+  + +E +K  + +           +      +   L              
Sbjct: 2174 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 2233

Query: 246  ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289
                     F    +     +      +L  ++           A   + +   ++ +  
Sbjct: 2234 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 2293

Query: 290  LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              ++ L E ++S  G++  +L   GA   GR+S      Q +PR+               
Sbjct: 2294 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 2337

Query: 349  RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                            R+C +         G K ++AD + IE R+ A +A ++  I+A+
Sbjct: 2338 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 2383

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              GED++  T +   N P   +SK  R + K +   L Y   A  F+  AS         
Sbjct: 2384 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 2435

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                          A   ++           + + + G+ +  +
Sbjct: 2436 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 2465

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                      ++      R                                         
Sbjct: 2466 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 2491

Query: 583  ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                         K     +Q  S DI  E +          G  +V+ VHDEI++E P+
Sbjct: 2492 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 2538

Query: 639  TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
                  +  L   M      + + +P  AEG  A  +
Sbjct: 2539 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 2575



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62
            +D+ET    P            A I L   A  D P  L+D       S     +   L 
Sbjct: 1878 VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 1927

Query: 63   DETVMCVAHNSLFERILFK 81
               +  V HN  F+     
Sbjct: 1928 SPRIRKVFHNGQFDLCFLA 1946


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 112/356 (31%), Gaps = 40/356 (11%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                  +  +Y  DE +  V+ +   +  +    LGI+I    +  T ++        S
Sbjct: 352 PDQKFVENFKKYFEDENINKVSFDIKEDI-VLFNKLGIEIN-FPYDDTMLMHYLIDPSRS 409

Query: 109 LKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +        L +     +   GK    +  K   +        +  +           
Sbjct: 410 SYDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSS--IINAIEDSLDIL 467

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            D      +++        E  L  +   +   G+  D + + K+++ ++ E + L++ I
Sbjct: 468 TDKLKELSMYELYKDC---EIKLSKVLAEMEITGFICDKNELEKIKDEVSLELEDLEKVI 524

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
            +L      +      L + LF    + ++  ++    T   +L            I   
Sbjct: 525 YELAGSEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERY 583

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     L +L E +  DGR+R T +    + TGR S      QNLP          
Sbjct: 584 REMYKLKSTYLESLEECIDEDGRIRSTFKQNV-TATGRLSSTEPNLQNLP---------- 632

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                 +R    A   K L+ AD + IE RVLA +A +  
Sbjct: 633 --------------IRTEEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLANDKK 674


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%)

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                T + A+                      K+     ++ RF    +D        +
Sbjct: 194 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 239

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201
                 Q    Y  RD      L +R         L  + D E         +   G +I
Sbjct: 240 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245
           D     +L+  + +E +K  + +           +      +   L              
Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358

Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289
                    F    +     +      +L  ++           A   + +   ++ +  
Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 418

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L E ++S  G++  +L   GA   GR+S      Q +PR+               
Sbjct: 419 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 462

Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           R+C +         G K ++AD + IE R+ A +A ++  I+A+
Sbjct: 463 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 508

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GED++  T +   N P   +SK  R + K +   L Y   A  F+  AS         
Sbjct: 509 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 560

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A   ++           + + + G+ +  +
Sbjct: 561 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 590

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                     ++      R                                         
Sbjct: 591 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 616

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                        K     +Q  S DI  E +          G  +V+ VHDEI++E P+
Sbjct: 617 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 663

Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
                 +  L   M      + + +P  AEG  A  +
Sbjct: 664 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 6  IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62
          +D+ET    P            A I L   A  D P  L+D       S     +   L 
Sbjct: 3  VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52

Query: 63 DETVMCVAHNSLFERILFK 81
             +  V HN  F+     
Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%)

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                T + A+                      K+     ++ RF    +D        +
Sbjct: 194 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 239

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201
                 Q    Y  RD      L +R         L  + D E         +   G +I
Sbjct: 240 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245
           D     +L+  + +E +K  + +           +      +   L              
Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358

Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289
                    F    +     +      +L  ++           A   + +   ++ +  
Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 418

Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++ L E ++S  G++  +L   GA   GR+S      Q +PR+               
Sbjct: 419 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 462

Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                           R+C +         G K ++AD + IE R+ A +A ++  I+A+
Sbjct: 463 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 508

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
             GED++  T +   N P   +SK  R + K +   L Y   A  F+  AS         
Sbjct: 509 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 560

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                         A   ++           + + + G+ +  +
Sbjct: 561 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 590

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                     ++      R                                         
Sbjct: 591 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 616

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                        K     +Q  S DI  E +          G  +V+ VHDEI++E P+
Sbjct: 617 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 663

Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
                 +  L   M      + + +P  AEG  A  +
Sbjct: 664 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 6  IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62
          +D+ET    P            A I L   A  D P  L+D       S     +   L 
Sbjct: 3  VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52

Query: 63 DETVMCVAHNSLFERILFK 81
             +  V HN  F+     
Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 115/434 (26%), Gaps = 109/434 (25%)

Query: 240 ALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           A+   L+    +             T    L            +++    S      ++ 
Sbjct: 7   AMGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDK 66

Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L+  +   DGR+  T      + TGR S      QN+P                      
Sbjct: 67  LATLIDPADGRVHTTFNQTV-TATGRLSSSNPNLQNIP---------------------- 103

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R+  +A+     + AD + I+ RVLA  +G+    +AFA+ +DI+  T 
Sbjct: 104 --IRTPEGRRLRAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTA 161

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           A+ F      VS + R + K +   + Y               L   +          FE
Sbjct: 162 AEIFRVNQGLVSADMRRVAKTINFGIVYGMS-----AFGLAEQLRCSRKEAQTFIDRYFE 216

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VV 532
            ++        + +Q         L+     L           +    K   E      +
Sbjct: 217 LYQGVHRFMQEIVEQARRDGWVGTLLQRRRPL---------PEINSGNKMRREFAERTAI 267

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                 +A  +  +  +                R L  +D + +                
Sbjct: 268 NTPIQGTAADIIKLAAIACD-------------RALREADCRSE---------------- 298

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651
                                +              HDE++ E P      VG L    M
Sbjct: 299 --------------------ALLQI-----------HDELIFEVPQDELAQVGPLIRQAM 327

Query: 652 TKNPSWAKGLPLKA 665
            +    A  +PL  
Sbjct: 328 EEVMELA--VPLTV 339


>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
          Length = 2176

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 90/666 (13%), Positives = 175/666 (26%), Gaps = 110/666 (16%)

Query: 17   PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------QSAMPSDLLQYLRDET-VMC 68
             K G +++     I   A +W+         +             + L   L D T  M 
Sbjct: 1588 RKSGNYSH-GNKEIRGVAISWESNIAYYISFSNSQESKVSGKEQMALLKDLLYDTTLYMK 1646

Query: 69   VAHNSLFER-ILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKN-ACLALN-----FS 119
                +  +   L  +  GI     R++   +     TN    +                 
Sbjct: 1647 CF--ATKDIYKLLYQCCGITAK-CRFLDPIIGHWLYTNDFERNFNEMVLEYFQQGNVIMK 1703

Query: 120  EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               +    G  + AR             + A  V  W +      +  E    L   L  
Sbjct: 1704 RIKSCYYAGPGMDARNSLP-----GEFRSAAEAVLTWHMMDNIMNKLEELNPAL---LYT 1755

Query: 180  LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
              + E  +      +   G  ++L  + +L  +++ E + L+     L      +   + 
Sbjct: 1756 FREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRKF-NFSSSK 1814

Query: 240  ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             +   L L     +   S+  L+              L+++    + +    +  L    
Sbjct: 1815 EVGQVLGLYKDKKV-STSKTVLEK------CDNPISTLVISWRKLNATKTKMIYPLLNLA 1867

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              D R+RG       + TGR S      QN+P+                     +     
Sbjct: 1868 QGDSRVRG--NCITCTVTGRVSMHEPNLQNVPKD-------------------FSFADNN 1906

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                VR   +   G  ++ AD   +E R+L   + +    K      DI+    AK  N 
Sbjct: 1907 LVVSVRMAFVPVLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIAAKWNNV 1966

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              ++V+ E R   K +   + Y  G K          L + +        S    +    
Sbjct: 1967 AEEQVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISEPEAQEFLESFMSAYPGIY 2021

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                 + ++         L+G          R +   +      +               
Sbjct: 2022 KWLNDILEEAHHDGYVTTLLGR---------RREFPDLSSTKSSVRAQAERQSVNTKVQG 2072

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            +        ++    K   +                   +     S+ +R          
Sbjct: 2073 SAADIVKKAMISIEDKIRCYF------------PDSAIIFPEVHASRKLRS--------- 2111

Query: 600  NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWA 658
                            N  + G  +VL +HDE++ E           +    M       
Sbjct: 2112 ----------------NLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESMENVCQLT 2155

Query: 659  KGLPLK 664
              LP+K
Sbjct: 2156 VPLPVK 2161


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/603 (14%), Positives = 171/603 (28%), Gaps = 121/603 (20%)

Query: 86   IDIPSKRWICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSID 141
              I    +    +     G   SL+                 + +  K    +      D
Sbjct: 546  FGIKCTEYFDILLARYVLG-TESLQEIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSD 604

Query: 142  SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                +       + + ++            E F  +    +    L  +   + + G +I
Sbjct: 605  DVVCE---FLSKRTFFIYKLEIIFRNRLQNEQFLNIFDKLES--RLIPVLAQMEETGIKI 659

Query: 202  DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
            D     + Q  + ++   L  DI KL DG   +      L   LF    I     ++   
Sbjct: 660  DKKYFSEFQNELEEKINMLQSDIYKLADGEF-NIDSPQQLGEVLFEKLQIPSGKKTKTGY 718

Query: 259  GTLKSILS-------HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
             T   +L         +   ++    +L   A        +  + +    + R+  T   
Sbjct: 719  STNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQ 778

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
             G + TGR S      QN+P                                +R+  ++ 
Sbjct: 779  NG-TSTGRLSSANPNLQNIP------------------------VRTDDGIRIRTGFVSK 813

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRA 430
             G  L+  D + IE RVLA ++ +   ++A+ + +D++  T  K  F T  D++S+ +R+
Sbjct: 814  EGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEEDEISRHERS 873

Query: 431  IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
            I KV+  ++ Y               L +     +   T+ FE++ +       + +   
Sbjct: 874  IAKVINFSILYGKTP-----FGLSKELGITVQEASQYITTYFEEYPRVRKFLDIVTETAK 928

Query: 491  EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                 +   GT         R    G+    K++      +                 ++
Sbjct: 929  LHGFVETFYGT---------RRYISGINATNKNVQAQAVRMAVNTVVQGTAANIIKKVMI 979

Query: 551  MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                +                                        K  ENI         
Sbjct: 980  ELHEEF---------------------------------------KNDENI--------- 991

Query: 611  CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670
             + +         ++  V DE            +  +   M     + K +PLKA G  A
Sbjct: 992  -KMLLQVHDE---LIFEVRDEF----AKEYMEKIEKI---MENTVKF-KKVPLKANGSVA 1039

Query: 671  KRY 673
            K +
Sbjct: 1040 KNW 1042


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/501 (13%), Positives = 144/501 (28%), Gaps = 103/501 (20%)

Query: 184  ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
            E  L  +   +     +++ + + K   L+    K+L+++   +             LR 
Sbjct: 1113 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGEPFL-ITSNNQLRE 1171

Query: 244  YLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             LF    +             + +   T +++L+          +IL            +
Sbjct: 1172 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDFHPLPKIILEYRQVHKIKSTFV 1231

Query: 293  NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            + L  A +  G +  T    G + TGR S      Q + +               ++  T
Sbjct: 1232 DGLL-ACTKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKTLT 1289

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA--NGEDIYV 410
            I+          R+  ++S G   + AD + IE R+LA ++G+   +K F     +D++ 
Sbjct: 1290 ISP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQEAERDDVFS 1340

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T  ++  + P+++V+   R   K +  A+ Y  G +          L +          S
Sbjct: 1341 TLTSQWKDVPMEQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPVQEAAQFLES 1395

Query: 471  TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
              + +++ +        Q  +      ++G    L           +    + L      
Sbjct: 1396 FLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRPL---------PRIHAHDQQLRAQAER 1446

Query: 531  VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                     +                          +L    V    +   T        
Sbjct: 1447 QAVNFVVQGSAADLC---------------------KLAMIHVFTAVAASRTL------- 1478

Query: 591  RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
                           +R                +V  +HDE++ E  D        L   
Sbjct: 1479 --------------TAR----------------LVAQIHDELLFEVEDPQIPECAALVRR 1508

Query: 650  LMT-----KNPSWAKGLPLKA 665
             M      +       +PLK 
Sbjct: 1509 TMESLEQVQALELQLQVPLKV 1529


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/677 (15%), Positives = 196/677 (28%), Gaps = 163/677 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D ET         G+  Y++        +    E   +       A+  +      
Sbjct: 37  ILGLDSETT--------GLDIYSKGFRCRTVQFG-SPEEGWVIPVERG-AVFREAAIAAL 86

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112
                 V HN+ ++  +F K LG+ +     + + T +LA               SL+  
Sbjct: 87  RAADRFVLHNASYDLQVFDKCLGVPMEELWPKVVDTKILAHLVDPRGRKEGGTGHSLEEL 146

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                    +      K L+    K    +      + +       +  Y   D      
Sbjct: 147 TRHY-LDADVADTV--KTLMTDLAKEEKTTKANVWKKVSLDNP--RYQLYAGMDPILACR 201

Query: 173 LFKRLIPLSD--------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           L ++L PL           ERDL  +   +   G+ +D+D   KL   +  +     E  
Sbjct: 202 LRQKLSPLVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLDESVASEIA 261

Query: 225 VKLTDGIIRSSRQTYALRMYLFLIT-GID--LVDMSEGTLKSILSHS--NITQLAKDLIL 279
           +        +   T  +   L  +   I        +    ++L+    +  + A+ +I 
Sbjct: 262 LSYGCE---NVNSTDQVADVLEQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVID 318

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +       ++   + V  DGR   ++    A RT R S      Q LP  +     
Sbjct: 319 A-KKAGKWRKTWVDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGDW---- 372

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   +R C +A  G+ +   D    E RVLA ++G+   I
Sbjct: 373 -----------------------MIRRCFLADEGELIASVDYQAQELRVLAALSGDPTMI 409

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +AFA G+D+++ T   AF   I K   E                                
Sbjct: 410 RAFAEGQDLHLLTARAAFGDHITKDDPE-------------------------------- 437

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                          + +  +            + +  L   A + V   +   + GV  
Sbjct: 438 -------------RKYAKVVNFGRVYGGGAKTVSEQTGLGFMAAKQVVDGFDKAYPGVRV 484

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
           L   L E      Q                          IV P+ R L     +     
Sbjct: 485 LSHKLQEEAVKSGQ--------------------------IVTPTGRVLPVDQDR----- 513

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETP 637
                                ++Q+ SRD+  + +    + G+  ++ L +HDE+++  P
Sbjct: 514 --------------AYAALNYLIQSTSRDVTGKALIRLHRAGFGPNLRLPIHDEVLASVP 559

Query: 638 DTPYFS-VGTLCSLMTK 653
                     +  +M +
Sbjct: 560 AAKARWGANRIAEIMRE 576


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 176/655 (26%), Gaps = 190/655 (29%)

Query: 76   ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
            E    +   G+ +       T + A+                      K+     ++ RF
Sbjct: 1690 EIGALQSDGGVYVSG-PIFDTLIAAKVVEA-----------GVMGTGFKLL---QVVERF 1734

Query: 136  CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERD 186
                +D        +      Q    Y  RD      L +RL    +          E  
Sbjct: 1735 LGVLMDKRMQASDWS-SPHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMR 1793

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQTYALRMY 244
                   +   G +I+     +L+  + +E  K  + +      D    +      +   
Sbjct: 1794 CLRPVVAMELNGMQIEHARWKELEAHLRKEEVKARKRLAAELHVDETTVNFNSQKQMLDA 1853

Query: 245  LFLITGIDLV---------------------------------DMSEGTLKSILSHSNIT 271
            L    GI                                     + + T    L+     
Sbjct: 1854 LR-AIGIPSPPPDRPASRSRGARPSAFSEQRGLGFDQPAELEDTLLKDTSDGTLARLT-Q 1911

Query: 272  QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              A   + +   ++ +    ++ L + ++S  G++  +L   GA   GR+S      Q +
Sbjct: 1912 YPAVQALRDYRKAAKAITTFVDKLPQHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQI 1970

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGI 384
            PR+                               R+C +         G K ++AD + I
Sbjct: 1971 PRE----------------------------RRFRACFVPSAKVAGRPG-KFIIADFSQI 2001

Query: 385  EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            E R+ A +A ++  I+A+  GED++  T +   N P   +SK  R + K +   L Y   
Sbjct: 2002 ELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGLIYGMS 2061

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            A  F+  AS                                       A   ++      
Sbjct: 2062 ADRFRGYASS--------------------------------------AYGVQMTPQEAR 2083

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                 + + + G+ +  +          ++      R                       
Sbjct: 2084 AFHAKYFSSYAGITRWHQ------RQKAEQPRETRTRAGRRALFDYFAFT---------- 2127

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
                                           K     +Q  S DI  E +          
Sbjct: 2128 -------------------------------KSLNYPIQGTSADITKESLVRLQDKLAPL 2156

Query: 621  GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
            G  +V+ VHDEI++E P+      +  L   M      + + +P  AEG  A  +
Sbjct: 2157 GGRLVMCVHDEIIAEVPEDKAEEGLRILIETMEAAGNKFLRFVPCVAEGAIADSW 2211



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 13/79 (16%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62
            +D+ET         G+  Y   A + L   A  D P  L+D       S     +   L 
Sbjct: 1530 VDVETT--------GLDPY--SARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLA 1579

Query: 63   DETVMCVAHNSLFERILFK 81
               +  V HN  F+     
Sbjct: 1580 SPRIRKVFHNGKFDLCFLA 1598


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 109/696 (15%), Positives = 190/696 (27%), Gaps = 144/696 (20%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEP----VKLWDRTEQ----SAMPSDLLQYLRDET 65
             L   G         I   + A  + P    V   D  ++     ++  DL   L +  
Sbjct: 37  LNLTATGPDPLCH--EIQRISLALPNAPSSSTVYTVDIADRPELKESIIGDLAGLLENGR 94

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-------RTNGLPSSLKNACLALNF 118
           +    H+S F     +   G  +         + +              + K      N 
Sbjct: 95  IKKTLHDSKFVLSFIRARAGRKLNFCSIFDVMLASQICWSGYYYLTPSGNPK------NP 148

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                      +L  R     +D        A  +            D+ A       L 
Sbjct: 149 WTKRLVDHSLASLAERHLGIILDEEGCPAQGAAALLPLH--------DILADLLAKNDLQ 200

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI------- 231
            ++D E    +    +   G  +D      L +    E       +    +         
Sbjct: 201 RVADLEFRAAIALVEMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSF 260

Query: 232 -------IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +  +   +  +L    G    +     LKS+   +     A+ L+  R  S
Sbjct: 261 DGKRLCCYLNPDRQEDVMAFL-AKRGYRPANTKAEVLKSLA--AAGCSFAEALMRYRHLS 317

Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                L LN   E V   DGR+         S TGR S      Q +PR           
Sbjct: 318 YNL--LFLNKWLEKVHPLDGRVHPQYFQIP-SSTGRISSRHPNAQQIPR----------- 363

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                         G  +  +R     + GK+ V ADL+ IE R++A I+G++   +AF 
Sbjct: 364 -------------RGDDAPAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFI 410

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQF 462
            G D++  T ++   TP ++V+  QR   K M   L Y G AK  +  + S  G  +   
Sbjct: 411 KGIDLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQWRILSDYGEFICLD 470

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
               +    F  +                                               
Sbjct: 471 ETEERLERFFCSYPGVREWQ---------------------------------------- 490

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                    + +          N  R            +L   RR ++       +    
Sbjct: 491 ------KMQLSQMSYTMQHHFHNCVRGFFSLPLTATRTIL--GRRRIWPRFGAGITASKF 542

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                        ++     Q    D++   M    +        I+ ++HDEI+ E P+
Sbjct: 543 -------------QMYNTPCQGTGADLIKLVMAEVYEKLSDEEARIIGSIHDEIILEVPE 589

Query: 639 TPYFS-VGTLCSLMTKN-PSWAKGLPLKAEGYEAKR 672
                    L  +M +        +P+KAE    + 
Sbjct: 590 DRAEEYAARLKEIMERIGSEMLYPVPVKAEAKVMRN 625


>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
          Length = 2435

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/736 (12%), Positives = 189/736 (25%), Gaps = 150/736 (20%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN----------------- 72
            +   A  W  +        ++     ++   L   ++     N                 
Sbjct: 1750 VVGLAVCWGGKDAFYISLQQKLKEQIEMSASLAPPSLD---QNLTVAERLEHLQSCLQDS 1806

Query: 73   ------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
                  +++E         K  GI +    +    V            SL N   +    
Sbjct: 1807 KRDFSLAMYEFIQHYKTLLKACGISLAG-SFEDPKVACWLLDPGSNERSLHNMVASFLPE 1865

Query: 120  EHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEATRELFKR 176
            E     + G     +      S D           V  + L          +  +++F +
Sbjct: 1866 ELFLLDKIGTGQGNQSIGLNASADHSGRYRAAVESVLVFHLMDKLSALLQKDNLQDIFHK 1925

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            +      E         +   G           + ++  +  + +  I +L  G   S  
Sbjct: 1926 M------EMPNQYCLALLELNGIGFSTAECETQKHVMEAKLSETENQIYQLA-GHSFSLT 1978

Query: 237  QTYALRMYLFLITGIDLV---------------------------DMSEGTLKSILSHSN 269
                +   LFL   +                                   T K +L    
Sbjct: 1979 CPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTGRAVVNGNRVRLSKQFSTTKGVLEKLK 2038

Query: 270  ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                   LIL     + +    +       L   +    R+    Q   A  TGR S   
Sbjct: 2039 ALHPLPGLILEWRKITNAITKVIFPLQREKLLNPILGMERIYPVSQTNTA--TGRISFRE 2096

Query: 325  FQPQNLPR--------------------------QERSEEILTQTIQALNRGETIADPLG 358
               QN+P+                          + R+ +      +  N  E +     
Sbjct: 2097 PNIQNVPKDFEIEMPILVEESPPTQRQHKMFNAPRNRNRKSSVLPCEPKNLTERLTSKKI 2156

Query: 359  LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
              +  +R   +   G  ++ AD + +E R+LA +  +   ++A  +G D++ +  A+   
Sbjct: 2157 PFAVSMRHAFVPFPGGLILAADYSQLELRILAHLCCDRRLLQALNDGADVFRSIAAEWKM 2216

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               + V  + R   K +   + Y  GAK          + + +   +    S    +   
Sbjct: 2217 MAPEAVGNDLRQQAKQICYGMIYGIGAKSLGE-----QMGVDEKDASYYIDSFKSRYPGI 2271

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            +        +  +      ++G    L     R  +           +     V      
Sbjct: 2272 QKFLRETVKKCNQDGFVQTIMGRRRYLPTI--RESNPYKKA------QAERQAVNTVVQG 2323

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            SA  +     + +++        LPS+ +          +  +    +  R+  Y     
Sbjct: 2324 SAADIVKTATVNIQKQLE----ALPSAVKSFEHLCSSTQNKWSGMAEK--RQIMYP---- 2373

Query: 599  ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657
                                K+G   +L +HDE++ E  +     V  +    M      
Sbjct: 2374 --------------------KHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEMEHAVK- 2412

Query: 658  AKGLPLKAEGYEAKRY 673
               + L  +      +
Sbjct: 2413 -LSVKLSVKVKVGSSW 2427


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AYA++ EPVK+WD T+   MP DL  YL D
Sbjct: 10  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++ K  L ID+P  R   T V A  +GLP +L + C   N +   
Sbjct: 69  PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128

Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179
           TK +EGKALI  FCK    +S     T   H + W  F  Y   D+ A RE+++ L    
Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           ++  E  LW LDQ IN RG  +D++L       + 
Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223


>gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia
            guttata]
          Length = 2588

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 89/736 (12%), Positives = 180/736 (24%), Gaps = 143/736 (19%)

Query: 30   ITLCAYAWDDEPVKLW------------------DRTEQSAMPSDL---LQYLRDETVM- 67
            +   A  W  +                          +   +   L    QYL+ +T   
Sbjct: 1896 VVGLAVCWGGKDAYYISLQQTQDQTEISLSLAPPPLDQSLPVTERLNHLQQYLQKKTKKE 1955

Query: 68   --CVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
               +    +++            GI +    +    V            +L +       
Sbjct: 1956 RSLI----MYDFIQHYKTLLMACGISLEG-SFEDPKVACWLLDSGSKEHTLHSMVTNFLP 2010

Query: 119  SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            SE       G         G   S          +++  +F    +   E  +E    + 
Sbjct: 2011 SELPLLEGVGTGQ-GVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENLTDVF 2069

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 E         +   G           ++++  +  +++    +L  G   S    
Sbjct: 2070 S--KVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLA-GHSFSLTSP 2126

Query: 239  YALRMYLFLITGIDLV---------------------------DMSEGTLKSILSHSNIT 271
              +   LFL   +                                   T K +L      
Sbjct: 2127 DDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLKTL 2186

Query: 272  QLAKDLILNRLASSGSAILKLNTLSEAVSSD---GRLRGTLQFYGASRTGRWSGCVFQPQ 328
                 LIL     + +    +  L      +   G  R        + TGR S      Q
Sbjct: 2187 HPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPISQTHTATGRVSFTEPNIQ 2246

Query: 329  NLPR------------------------------QERSEEILTQTIQALNRGETIADPLG 358
            N+PR                              + R    +      +       +   
Sbjct: 2247 NVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEERGI 2306

Query: 359  LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ +   I+A   G D++ +  A+   
Sbjct: 2307 QFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAEWKM 2366

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               + V +  R   K +   + Y  GAK          + + +        S    +   
Sbjct: 2367 IDPEAVGERTRQQAKQICYGIIYGIGAKSLGE-----QMGIDENEAANYIESFKSRYTGV 2421

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
            +                  ++G          R     +                     
Sbjct: 2422 QKFLRETVRSCRRDGFVQTILGR---------RRYLPAIKDPNPYSKAHAERQAVNTTVQ 2472

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             +         V  + + +     PS  +        + S+    T +L R+R  G    
Sbjct: 2473 GSAADIVKTATVNIQKRLEAF---PSVFKSH---GHLESSFQRDKTGRLSRKRNTG---- 2522

Query: 599  ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657
                           M +  + G+ I L +HDE++ E  +     V  +    M      
Sbjct: 2523 ---------------MLHPIRGGFFI-LQLHDELLYEVAEDDVIQVAQIVKREMENAIK- 2565

Query: 658  AKGLPLKAEGYEAKRY 673
               + L  +      +
Sbjct: 2566 -LSVKLDVKVKIGPSW 2580


>gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa]
 gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa]
          Length = 1001

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 104/677 (15%), Positives = 189/677 (27%), Gaps = 148/677 (21%)

Query: 20  GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHN 72
           G+        I   A    +E     D                 L   LR E    +   
Sbjct: 438 GLGIAIYNRDIIGIALCALNEECVYIDFRPNRISEIEIYERIETLDNILRSEQQKYI--- 494

Query: 73  SLFERILFKKTL----GIDIPSKRW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
             ++ + F ++L    G   P   +   IC   L+      +S          S    + 
Sbjct: 495 --YDLVSFSRSLRYLRGTTYPPSLFNHCICIQTLSYLAHYRAS-D------GNSAISFQD 545

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                L+++           + T      A   F      D   +  +    +   + E 
Sbjct: 546 -----LVSQLTSPERAIILRNATSRLQA-AISAFICLHMHDDLLSAAIRLSSMKSVELEL 599

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
              +L   I   G   D +    L   + Q+   ++     ++     +      +   L
Sbjct: 600 QSVVLFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIPF-NFGSAAEISQIL 658

Query: 246 FLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           F+   I   ++S      T K +L          +LIL     S +    L +L ++  S
Sbjct: 659 FVRLQIPPPNLSTGRHYSTNKFVLQQLAPNYPIINLILEWRRISTALTTSLPSLLKSCCS 718

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+R    F   S TGR        QN+ +    +                        
Sbjct: 719 DGRIRT--NFITYSCTGRVLTENPNVQNVQKDGIID-----------------------G 753

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +RS  IA  G+ L+ +D   +E R+LA ++ +   I  F    D +     K  NT  
Sbjct: 754 FSIRSLFIAPKGRILLSSDYRQLEMRMLAHLSADSQLISLFLAEGDFFEIITNKW-NTNE 812

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
               K  R   K +   + Y  G+                                    
Sbjct: 813 TLPVKVDRNKVKQLCYGIIYGMGSLSLS-------------------------------- 840

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                        +  +     + +  ++  +   V      +                 
Sbjct: 841 ------------KELGIQKQHAQQMIISFFQQFPKVRTWMDKI----------------- 871

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                    +   + D  +     RR     +    S L T ++Q  R+           
Sbjct: 872 ---------LAVCRADGFVSTLLGRRRFLPQI---NSMLQTESAQAERQAI------NTC 913

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656
           +Q    ++    + N  KN       IV+ +HDE++ ET ++   SV  +    MT    
Sbjct: 914 IQGSVAELFKMALLNLQKNLLGTNSSIVMQMHDEVLVETDESSVASVVEIIKHSMTSVMP 973

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PL  +    K +
Sbjct: 974 -NLRVPLAVKISSGKNW 989


>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
 gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
          Length = 2508

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/612 (13%), Positives = 152/612 (24%), Gaps = 167/612 (27%)

Query: 147  CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             TR                D     +    L PL + E  L  +   +   G  +   ++
Sbjct: 1963 PTRQADACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRILARMEGEGIALAPQVL 2022

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSE 258
               +  +    ++L                    +   LF    +               
Sbjct: 2023 KDQRGPLEARLRQLAAKAHLAAGMTFD-LNSPKDVSEVLFQHLNLPPPPCAFSNQNQRHP 2081

Query: 259  GTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSE------------------- 297
             T K +L             L+L+           + TL                     
Sbjct: 2082 STKKEVLEELEESTHHPIIRLLLDYRTLHKLLTGFVETLYHTAKGQWQRQQHELERCQGQ 2141

Query: 298  -------------AVSSDG--------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
                         AV   G        RL GT   + ++ TGR +      Q +PR    
Sbjct: 2142 GQQPQRGGAATGGAVKPGGPGPVPDVIRLCGTW-LHTSTATGRLAMDEPNLQTVPRPVEY 2200

Query: 337  EEILTQTIQALNRGETIADPLGLASDCV----------------------RSCIIASNGK 374
              + +Q  QA       A   G     +                      RS  +A  G 
Sbjct: 2201 TFMASQLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSVTLHFNLRSAFVAPPGY 2260

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANG-EDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
             ++ AD   IE R++A  + +        N  +D ++   A+    P+++V+ E R   K
Sbjct: 2261 MVLAADYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWKKVPVEQVTPEVRVQAK 2320

Query: 434  VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
             +   + Y  G                                                A
Sbjct: 2321 RLAYGMLYGMGTNTL--------------------------------------------A 2336

Query: 494  VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
             +  +       +   +R     V +  +++ E           +               
Sbjct: 2337 QELGVSVAEAGELSDNFRRAIPSVDRWMREVVEAVRSCGYTTTLM--------------- 2381

Query: 554  HKRDVHIVLPSSRRLVYSDVKGDCSY-LNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        RR  YS +    S    +A +Q  R+          + Q  + D++  
Sbjct: 2382 -----------GRRRYYSRINERASKDARSARAQAERQA------VNTVCQGSAADLIKA 2424

Query: 613  GMK----NATKNGY----DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP---SWAKGL 661
             M          G      +VL VHDE+V E  +    +   L     +       A  +
Sbjct: 2425 AMVTLQRRLEAEGLAPHVRMVLMVHDELVFEVAEQLLPAAARLV----QAVLEGEVALSV 2480

Query: 662  PLKAEGYEAKRY 673
            PL  +      +
Sbjct: 2481 PLPVKLSAGPSW 2492


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/631 (12%), Positives = 165/631 (26%), Gaps = 158/631 (25%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTK 124
             +A+N   E     +          +    +LA      L  SL      L        
Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPF-PTCYEDIGILAWLENCYLEPSLHALGQYLGEQ----- 407

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              G  L                     + A  +   Y       ++EL+     L    
Sbjct: 408 ---GYDLAGLEDTE--------ALFKASINARLILKAYKHYKEVLSQELWGIAHKLEYPL 456

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
                L  T+   G+ +D+     LQ+   +  + L++ +  +    + +   +      
Sbjct: 457 L---ELLYTMQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQV 512

Query: 245 LFLITGIDLV--DMSE---GTLKSILSHSNITQLAKDL-----------ILNRLASSGSA 288
           L+   G++       +    T ++ L     T    ++           +LN        
Sbjct: 513 LYEHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYREIFKLQ 572

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              +    +   + G++  T      + + R S      QN+P                 
Sbjct: 573 STYVEPFLK-RHTQGKIHTTFYQNK-TASSRLSSANPNLQNIP----------------- 613

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +    IAS G  L+  D + IE R+LA  + +   +KAF   EDI
Sbjct: 614 -------IRHDLGRKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++ T    F       ++ +R I K +   L                             
Sbjct: 667 HLNTATALFG----NQAQAKRPIAKAINFGLI---------------------------- 694

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                 + A   ++     +   + +  K   +    ++L    
Sbjct: 695 ----------------YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARI 738

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               Q    +   R  +                     +     +  D            
Sbjct: 739 LQEGQVTTLLGHVRRFSF--------------------KQASPKLHAD------------ 766

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDTPYFS 643
               Y  +    + Q  + D++   M         +    +++ VHDE++ E  +     
Sbjct: 767 ----YLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822

Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   + +LM         +PL+     A  +
Sbjct: 823 LQQEIKTLMENIYP--LRVPLECHASIASNW 851


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/631 (12%), Positives = 166/631 (26%), Gaps = 158/631 (25%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTK 124
             +A+N   E     +          +    +LA      L  SL      L        
Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPF-PTCYEDIGILAWLENCYLEPSLHALGQYLGEQ----- 407

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              G  L                     + A  +   Y       ++EL+     L    
Sbjct: 408 ---GYDLAGLEDTE--------ALFKASINARLILKAYKHYKEVLSQELWGIAHKLEYP- 455

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             L  L  T+   G+ +D+     LQ+   +  + L++ +  +    + +   +      
Sbjct: 456 --LLELLYTMQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQV 512

Query: 245 LFLITGIDLV--DMSE---GTLKSILSHSNITQLAKDL-----------ILNRLASSGSA 288
           L+   G++       +    T ++ L     T    ++           +LN        
Sbjct: 513 LYEHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYREIFKLQ 572

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
              +    +   + G++  T      + + R S      QN+P                 
Sbjct: 573 STYVEPFLK-RHTQGKIHTTFYQNK-TASSRLSSANPNLQNIP----------------- 613

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +    IAS G  L+  D + IE R+LA  + +   +KAF   EDI
Sbjct: 614 -------IRHDLGRKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           ++ T    F       ++ +R I K +   L                             
Sbjct: 667 HLNTATALFG----NQAQAKRPIAKAINFGLI---------------------------- 694

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
                                 + A   ++     +   + +  K   +    ++L    
Sbjct: 695 ----------------YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARI 738

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               Q    +   R  +                     +     +  D            
Sbjct: 739 LQEGQVTTLLGHVRRFSF--------------------KQASPKLHAD------------ 766

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDTPYFS 643
               Y  +    + Q  + D++   M         +    +++ VHDE++ E  +     
Sbjct: 767 ----YLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822

Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +   + +LM         +PL+     A  +
Sbjct: 823 LQQEIKTLMENIYP--LRVPLECHASIASNW 851


>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
 gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
          Length = 1492

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/661 (11%), Positives = 168/661 (25%), Gaps = 127/661 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
            +   A  W        +  + + +  D+   + + + + +A+N   +  +  + L ++I 
Sbjct: 932  VVGIAICWGGFDSYFVNLGDCNTLQDDVANNIENSSAIKIAYNLKEQYKILTRHLQVEIK 991

Query: 90   SKRWICTSVLARTNGLPSS-----------LKNACLALNFSEHLTKMEEGKALIARFCKG 138
               +    +        +            L +    L+          G  L       
Sbjct: 992  GTSY-DPKIGIWLLDQDAHEKTFHAIISNYLADEAALLDCVIGTCTDGNGIGL-----HY 1045

Query: 139  SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
            +  +               +        VEA  +  +     S+ E         +   G
Sbjct: 1046 NSQTSGRRRACIE-----SVLVHKLHSVVEAMLKERELYKLYSEIEMPTIRTLCWLELDG 1100

Query: 199  YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
                +D   +  E +      ++ ++     G          +   L+            
Sbjct: 1101 IGFCMDECQQQIERLQYRLHYIE-EMAYRIAGRSFQLTSPTDIAHVLYTELN-------- 1151

Query: 259  GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----AVSSDGRLRGTLQFYG 313
             T K +L   +       L+L     + +    L  L         S   R+  T Q + 
Sbjct: 1152 -TCKDVLQKLSQIHPLPALVLEWRRINSALTKTLYPLKRYSKYCHKSKTYRVYPTCQMHT 1210

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            A  TGR S      QN+P+     +++                       +R+ I  +N 
Sbjct: 1211 A--TGRISISDPNLQNIPKDFDIAKMVR----------------------MRNIIGCTND 1246

Query: 374  KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
              L+ AD + +E R++A ++ +    +   +G D++    ++    P D VS EQR   K
Sbjct: 1247 TILLSADYSQLELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAK 1306

Query: 434  VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
             M   + Y         MA    + + +        +    +                  
Sbjct: 1307 QMCYGIIYGMTP-----MALGEQMKVPEEQAATFMHTFKSRYNGIAKFIEKTLVSCRREG 1361

Query: 494  VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
                ++                 +      L               +             
Sbjct: 1362 YVSTIMNRK---------RLLPNIRSTNARLRSHAERQAINTTVQGSAADLV-------- 1404

Query: 554  HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                         ++   ++      +    +       +  K                 
Sbjct: 1405 -------------KIAMINIHKRIDEMCANRANRDNAE-WKPKF---------------- 1434

Query: 614  MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672
                       VL +HDE++ E       SV  +    M         + L+ +    K 
Sbjct: 1435 -----------VLQMHDELLFEIKANELESVSLIVKQEMENALK--LRVKLEVKIKTGKY 1481

Query: 673  Y 673
            +
Sbjct: 1482 W 1482


>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 94/722 (13%), Positives = 176/722 (24%), Gaps = 189/722 (26%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-------------------LR-----DE 64
             I   A  W++ PV   +  +      +                       L        
Sbjct: 1422 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1481

Query: 65   TVMCVA---------HNSLFERILFKK-----------TLGIDIPSKRWICTSVLARTNG 104
             V  +           N   +  + K             L +       I     +    
Sbjct: 1482 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELID---NSYLML 1538

Query: 105  LP----SSLKN--ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
             P      L        L   E  +     +  + +       +      R  +    + 
Sbjct: 1539 SPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQ-TRRA 1597

Query: 159  FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
                C R V  TR L   L  L             E  L  +   +   G  +D++  ++
Sbjct: 1598 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1657

Query: 209  LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLK 262
             + ++ ++ + L+++  +L             +   L+    + +            T K
Sbjct: 1658 ARNVLGKKLRHLEKEAYELAGMTFSLYTA-ADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1716

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRT 317
              L           +I      +      L ++         +    L G      ++ T
Sbjct: 1717 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQT-STAT 1775

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376
            GR S      Q         E + +        +             R   + S     L
Sbjct: 1776 GRLSMEEPNLQ-------CVEHVVEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWLL 1828

Query: 377  VVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            + AD + IE R++A  + +    +  +    D++    AK    P   V  ++R   K +
Sbjct: 1829 LTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRL 1888

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y  G                                                A +
Sbjct: 1889 VYGILYGMG--------------------------------------------ANTLAKQ 1904

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +      E   +++R+   GV      L E  AC  ++G   + +              
Sbjct: 1905 LECSLGEAEEKIRSFRSSFPGVASW---LHEAVACCCKKGYVKTLK-------------- 1947

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                      R+   S +K   S       +             +I Q  + DI+   M 
Sbjct: 1948 ---------GRKRFLSKIKFGTSKEKLKARRQ---------AVNSICQGSAADIIKIAMI 1989

Query: 616  NAT-----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
            N                         K    I+L VHDE+V E   +     G L    M
Sbjct: 1990 NIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTM 2049

Query: 652  TK 653
              
Sbjct: 2050 EN 2051


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  189 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 107/693 (15%), Positives = 175/693 (25%), Gaps = 182/693 (26%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            +D+ET            ++A    + L + A       L D        + L   L   T
Sbjct: 917  LDLETTGL---------SHARD-RVRLLSLATPSG-TFLVDLFALPDPAAALAPLLEALT 965

Query: 66   -VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNAC-LALNF 118
             V  V  N  F+     +   +     R   T + ++           SLK+     L  
Sbjct: 966  AVEVVGQNLGFDLPFLMR---LGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGL 1022

Query: 119  SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                      K L                T             Y  RD E    L++RL 
Sbjct: 1023 ELD-------KGL---------------QTADWSGPLTDAHLGYAARDAELPLALWERLA 1060

Query: 179  PLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            P           + E             G   D        + +A + +       +  D
Sbjct: 1061 PELAAAHLTGTAEAEMAALPAVAWAARHGVGFDRPAW----DAVAADTEACAARAREHLD 1116

Query: 230  GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR--LASSGS 287
             ++ ++   + +  +  +         +   L S    +          L R   A+S  
Sbjct: 1117 ELLPNAGNLFGVTNWNSVDEVTAAFAAAGVALTSTGDDALAAVAHPAAALLREHRAASKL 1176

Query: 288  AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            +          V+ DGR+    +  GA  +GR S      Q LPR               
Sbjct: 1177 SGTYGRGWLRHVADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRD-------------- 1222

Query: 348  NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                             R C +   G+ LV AD + IE R+ A I G+   + A+  GED
Sbjct: 1223 --------------PRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGED 1268

Query: 408  IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            ++ TT           V+K  R + K +   L Y  GAK     A+              
Sbjct: 1269 LHTTTARAVLGKT--DVTKADRQLSKSLNFGLLYGMGAKALAAYAASN------------ 1314

Query: 468  STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                          L        + A+   + G+    + +   
Sbjct: 1315 --------------------------FGVALTEGEAADHRDAFFRTYPGLRAWHRKV--- 1345

Query: 528  FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                          +     + RR V      +           
Sbjct: 1346 --------------------------PDGIIQTRTLAGRRRVGVGAFTEK---------- 1369

Query: 588  MRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYF 642
                          VQ    D L   +               VL VHDEIV E  +    
Sbjct: 1370 ----------LNTPVQGTGADGLKRALALLWARRNSCPDAFPVLLVHDEIVVECSEERRD 1419

Query: 643  SVGT-LCSLMTKNP-SWAKGLPLKAEGYEAKRY 673
                 +   M          +P++ E    + +
Sbjct: 1420 EAIAWVRDAMRDGMAPLIDPVPVEVEVSAGRTW 1452


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T   H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQ 236


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M+ L++D ET S   L KVG +AYAE     I +C YA+D+ PV++WD T+ S MP DL 
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           + +      D  +  V  N  +F+R + K   G ++  +  I T ++A  + LP SL   
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171
           C  LN    + K + GKALI RF K +  +      T   H + W  F  Y K D+ + R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           E++K++     S+ E  +  LDQ INDRG+++D+ L     E + + +++L E+  
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQ 236


>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
 gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
          Length = 2736

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/542 (13%), Positives = 140/542 (25%), Gaps = 139/542 (25%)

Query: 165  RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             D     +    L PL + E  L  +   +   G  +   ++   +  +    ++L    
Sbjct: 2255 LDKLPKLQSEGLLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKA 2314

Query: 225  VKLTDGIIRSSRQTYALRMYLFLITGI------------DLVDMSEGTLKSILSHSNITQ 272
                            +   LF    +                  +  +   L  S    
Sbjct: 2315 HVAAGMTFD-LNSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPST-KXEVLEELEESTHHP 2372

Query: 273  LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            + + L+  R          + TL       G+L G+   + A+ TGR S      Q +PR
Sbjct: 2373 ILRYLLDYRSLHKLL-TGFVETLYSTA--RGQLCGSW-LHTATATGRLSMDEPNLQTIPR 2428

Query: 333  QERSEEILTQTIQALNRGETIADPLGLASD------------------------------ 362
                   L+Q        E      G                                  
Sbjct: 2429 PVEYCFQLSQEESPRATTEMAVGVAGAEGQVPPLQPLQPAQGDGGEEAGGGGGGGGCRTV 2488

Query: 363  -----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-EDIYVTTYAKA 416
                  +R+  +A  G  ++ AD   IE R++A  +G+        N  +D +    A+ 
Sbjct: 2489 VRMHFNLRNAFVAPPGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEW 2548

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                +++V+ E R   K +   + Y  G                                
Sbjct: 2549 KRLSVEQVTPEVRVQAKRLAYGMLYGMGTSTLAA-------------------------- 2582

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                              +  +       +   +R    GV +  K++ E          
Sbjct: 2583 ------------------ELGVSVHEAAELSDNFRRAIPGVDRWMKEVVEQCRSCGY--- 2621

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL-NTATSQLMRERTYGG 595
                                   IV    RR  +  +         +  +Q  R+     
Sbjct: 2622 -----------------------IVTLMGRRRYFPRINERSCKEARSQRAQSERQAI--- 2655

Query: 596  KLTENIVQAISRDILCEGMK----NATKNGY----DIVLTVHDEIVSETPDTPYFSVGTL 647
                ++ Q  + D++   M        + G+     +VL VHDE+V E       ++  L
Sbjct: 2656 ---NSVCQGSAADLVKAAMISLTRRIREEGWAGRARLVLMVHDELVLEVETGLLPAMAAL 2712

Query: 648  CS 649
              
Sbjct: 2713 TR 2714


>gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
 gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
          Length = 595

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/534 (13%), Positives = 164/534 (30%), Gaps = 74/534 (13%)

Query: 160 GEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKL 209
                 +   T  L  +L  L +           E    +    +   G   + +     
Sbjct: 94  QTRAALECVFTFHLMVKLSKLLEEQGLSTAFRNVEMPSLVALARLELNGAGFNPEECETQ 153

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMS--------- 257
            +++    + L+E   KL      +   T A+   L+    ++       +         
Sbjct: 154 CQVMKDRLRMLEERAHKLAGHTF-ALNSTKAVDKVLYEEKKLEINEDPSTNSQPQERLST 212

Query: 258 --EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA- 314
             +G L+ + +   +  L   ++  +  S+     K+  L +    + RL     +    
Sbjct: 213 SRKGVLEKLKTSHPLHPLPGVILKWKHISNLLN--KVTPLQKKNVYNPRLNMDRIYSTCN 270

Query: 315 --SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
             + TGR +      Q +P++   E       +         + +     C+R   I   
Sbjct: 271 LHTATGRVAFHDPNLQFIPKEFEIEMPTDTNNE-DGPPAAGEETMSKRKVCMRHAFIPFK 329

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  ++ AD + +E R++A ++ +    +A  +G+D++    ++     ++ VS + R   
Sbjct: 330 GGVILAADYSQLEVRIMAHLSKDSKLTQALNSGQDVFKAIASQWKGVAVEHVSDKLRQQA 389

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +   + Y  G K          L + +     +  +    +   + +     DQ    
Sbjct: 390 KQLYYGIIYGMGPKTLGEK-----LGVSKEEGKRRIETFKSSYTGIQRYRQTTVDQCKRN 444

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                +      L        ++        L++            SA  +     +++ 
Sbjct: 445 GYVQTMAERRRYLPDINGEDYYK--------LSQAERQAFNTTIQGSAADLVKKAMVLID 496

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
           +  +      P +RR       G+ +     T +   ++                     
Sbjct: 497 QRLQQEF---PDTRRSH---RHGESTAAAADTDKRRSQQPSSPP---------------- 534

Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                   G  ++L +HDE++ E  +     V  +    M K    +  LP+K 
Sbjct: 535 -------RGAYLILQLHDELIYEVHEEDEQKVAQIVKHKMEKAMELSVELPVKV 581


>gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179]
 gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179]
          Length = 861

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 76/607 (12%), Positives = 153/607 (25%), Gaps = 156/607 (25%)

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
              +   ++LA  +                  ++ +    +L +   K            
Sbjct: 382 PTHYEDVALLAWLHNSS-----------LEPQMSALGRLFSLESFSSKPHAPL-NAAQME 429

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           +N     + +  Y         +L + L      E  L  +   +  +G+ +DL     L
Sbjct: 430 SNTRLIARAYTHYKDTLSPDLLQLAREL------EYPLLAILLEMQAQGFSLDLAYFQTL 483

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSI 264
           ++  AQ    L   I  L    I +   T     +L+   G+       +     T ++ 
Sbjct: 484 KQEFAQSLNTLQNQIHALAHTDI-NVNSTKQWAHFLYQDLGLQAKGVKKIKTGFSTDEAS 542

Query: 265 LSHSNITQLAK-----------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
           L     T               D +L            +  L    +  G++      + 
Sbjct: 543 LKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVEPLLTQ-NQHGKIHTIFYQHT 601

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372
            + + R S      QN+P                                +    I S  
Sbjct: 602 -TASSRLSSAHPNLQNIP------------------------IRTPLGKKIAHGFIPSAP 636

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
              L+ AD + IE R+LA  + +   I+AF   +DI++ T    FN P  +         
Sbjct: 637 DLLLLGADYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFNDPHKRH-------- 688

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
                       A      A   G+                                   
Sbjct: 689 ------------AAKSINFALIYGMGP------------------------------RRL 706

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A   K+     +     +      +      L        +    +  +R  +       
Sbjct: 707 ADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLKARILQEGKITTLLGHQRHFDFTNAT-- 764

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                               ++ +                Y  +    + Q  + D++  
Sbjct: 765 ------------------PKLQAE----------------YLREGINTLFQGSASDLVKL 790

Query: 613 GMKNATKNGY-----DIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAE 666
            M     +        +++ VHDEI+ E P T    +   + ++M         +PL+  
Sbjct: 791 AMLKIHAHIAKYPRVKMLVQVHDEIILEVPKTQVSQIALEIKTIMEGIYP--LKVPLECH 848

Query: 667 GYEAKRY 673
                 +
Sbjct: 849 TSYGANW 855


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 80/275 (29%), Gaps = 52/275 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + +D ET S   +           A +   ++A ++                   E+S
Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109
              + +   L +  +  +  N  F+  +F +  GI++    +  T +L+ T       ++
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461

Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +     L       +   GK                      +    +   EY   D +
Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506

Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
            T +L + L                 E  L  +   +   G  ID D +      IA   
Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
             L++    L      +   T  L+  LF   G+ 
Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLP 600


>gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca]
          Length = 769

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/501 (13%), Positives = 133/501 (26%), Gaps = 62/501 (12%)

Query: 65  TVMCVAHNSL-FERILFKK--TLGIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119
               +  N+  F R + +     G       ++     + A          +A       
Sbjct: 306 KCPVICFNAKDFVRTVLQFFGHDGSWKHVVHFVGLDPRIAAWLIDPG----DAA------ 355

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EY------CKRDVEATRE 172
               +    K L +        +         +          Y      C +       
Sbjct: 356 -PSFEDLVAKYLESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKARRLT 414

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
           ++         E  L  +   +     ++D + + +   L+    K+L+++      G  
Sbjct: 415 VYGLWQLFCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAH-FVAGEQ 473

Query: 233 RSSRQTYALRMYLFLITGIDL-------VDMS----EGTLKSILSHSNITQLAKDLILNR 281
                   LR  LF    + L                 T +++L           +IL  
Sbjct: 474 FLITSNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEY 533

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                +    ++ L  A    G +  T    G + TGR S      Q + +         
Sbjct: 534 RRVHKTKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQ 591

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                     TI+          RS  +A  G   + AD + IE R+LA ++G+   +K 
Sbjct: 592 NFKGVEGAMLTISP---------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKL 642

Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F   E    + T  ++    P + V+   R   K +  +  Y  G +          L +
Sbjct: 643 FQESERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAAC-----LGV 697

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                     S  + +++ +        Q  +      ++G    L           V  
Sbjct: 698 TVQEAAWFLESFLQKYKKVKDFVQTTIAQCHQTGYVASIMGRRRPL---------PRVRA 748

Query: 520 LWKDLTEGFACVVQEGGSISA 540
             + L                
Sbjct: 749 QDQQLRAQAERQAVNFVVQGT 769


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 193/699 (27%), Gaps = 175/699 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET         G+  Y +   I L  +  +     +             +  
Sbjct: 35  LRILGLDTETT--------GLNIYQDAFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++ LG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   ++ R+   +    A RT R S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A +G+ +V  D    E RVLA +A + 
Sbjct: 374 --------------------------MVRRCFLADSGQLMVSVDYQAQELRVLAALANDR 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF +  D++  T            S   R +GK++  A  +  G       A    
Sbjct: 408 TMIQAFKDNADLHQITADA---------SGVDRKVGKMVNFAYVFGSGPSTIAAQA---- 454

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                                    +     + V   +   +  
Sbjct: 455 ----------------------------------------GITFPEAKRVIAGFEQSYPE 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K L    A +                            ++ P+ RRL     +  
Sbjct: 475 VTALSKSLQREAANLGY--------------------------VITPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                            G      +VQ+ SRD+    +    + G   +  L +HDE+++
Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLA 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
             P+     +   +  +M +      G+ +  +     R
Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 100/364 (27%), Gaps = 112/364 (30%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QN+P                                +R   IA     +
Sbjct: 1   TGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFIAPEDYVI 36

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ EQR   K + 
Sbjct: 37  VSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAIN 96

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                              G+                                   A + 
Sbjct: 97  F--------------GLIYGMS------------------------------AFGLARQL 112

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +     +     +  ++ GVL+  +                                  
Sbjct: 113 NIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGY----------------------- 149

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
              +     RRL   D+K        A  +               +Q  + DI+   M  
Sbjct: 150 ---VETLDGRRLYLPDIKSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIA 197

Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669
                        +++ VHDE+V E       +V   +  LM         +PL  E   
Sbjct: 198 VDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGS 255

Query: 670 AKRY 673
            + +
Sbjct: 256 GENW 259


>gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri]
 gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri]
          Length = 538

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 70/571 (12%), Positives = 146/571 (25%), Gaps = 139/571 (24%)

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------E 184
                S  S  ++    N   +W       + D+      ++R   +            E
Sbjct: 67  YDGGISEVSGCFEEVTKNGDASWDSPTARLRADLALALRYYQRGSEIPRMQGISFARIVE 126

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
             + +    +  RG   D       +       ++L      +  G+  +      +   
Sbjct: 127 AKIAVALGAMQHRGMCFDRHEANTQRAAANARVEELQNRARDVIGGVEINLSSAQQVGDV 186

Query: 245 LFLITGIDLV-----DMSEG----TLKSILSHSNITQLAKDLILNRLASS-GSAILKLNT 294
           L+    +          ++     T   +L        A+ ++ +R A    +     + 
Sbjct: 187 LYNQLKLPPPSAHAMKGAKSSHLSTSVDVLQQMKHP-FAQIVLDHRGALKERAMCDGYDK 245

Query: 295 LSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            +  V+++G  R+        ++ TGR S      Q + R                    
Sbjct: 246 -ATVVNAEGHARIHTRWN-NTSTATGRLSSSAPNVQQVGRGS------------------ 285

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R+C IA  G+ LV AD + IE RVLA +  ++  I  F          
Sbjct: 286 -----------MRNCFIAPPGRVLVAADYSQIELRVLAHLTEDERLISLFNEHSR----- 329

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                                V      +            +  ++              
Sbjct: 330 --------------------TVDVFCAIW--------NAGRNLPIETPTEPGTRDI---- 357

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +  ++ +         A K        +    A+      V Q    + +      
Sbjct: 358 ---AKRTAYGIVYGQHATGLAEKLNCSKFEAQGYIAAFHRAFPRVQQWISRVIQTAERDG 414

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                      I+  S R      +  +     +   +      
Sbjct: 415 AV-------------------------IIPFSGRHRPLPKIHSNVFSERSEAQRQ----- 444

Query: 593 YGGKLTENIVQAISRDILCEGMKN---ATKNG------YDIVLTVHDEIVSETPDTPY-F 642
                   ++Q  + D++   M     ATK G       ++V  +HDE++ E        
Sbjct: 445 ----AVNTVIQGSASDLIKTAMLRWCEATKAGEARAELVELVAQIHDELLFECEKDYVQE 500

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           +V  + S M         +P   +    K +
Sbjct: 501 AVRVIRSCMEGA--LCLSVPTPVKISTGKSW 529


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 111/407 (27%), Gaps = 88/407 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             DL+  +          +  L E     GR+  ++     + TGR S       N P  
Sbjct: 529 INDLLELKSIEVLLHT-FIIPLIELTDPSGRIHTSININ--TETGRLSSRNPNLLNQPAL 585

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           E+                            +R   IA  G KL+VAD   +E RVLA + 
Sbjct: 586 EKDRY------------------------KIRKSFIAKKGNKLIVADYGQLELRVLAHMT 621

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                I AF  G D +  T    F    +++ K         EL + +            
Sbjct: 622 KCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDK--------GELLIEWDKSKGKA----- 668

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                           +      +  +  +        FA   +      +    AW A+
Sbjct: 669 -------PAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQ 721

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            + V Q   ++                                         R       
Sbjct: 722 RKEVEQWQYNVRMIAKNQ--------------------------FFTQTLLGRYRYLEKY 755

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
               +   +  +  +R            +Q  + DI+   M    K       GY ++L 
Sbjct: 756 FQQQT--RSYINHGLRAAI------NTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQ 807

Query: 628 VHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+     ++  +  LM         LPL+ +      +
Sbjct: 808 VHDELILEGPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNW 854



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 93/349 (26%), Gaps = 102/349 (29%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLWD-RTEQSAMPSDLLQ 59
           D ET     +          +  +   +        + + P    D   + S +     +
Sbjct: 78  DTETI-DIDVKSETP---INRGRLICASAFAGPEVNFGNGPRLFIDNFAQNSDLIMLFKE 133

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNACL 114
           Y  DE ++ + HN  F++ +F    GI++    +  T  +AR           SL    L
Sbjct: 134 YFEDEKILKIWHNYGFDKHIFGNN-GINVRGF-FGDTMHMARLLDPSKQPQEYSLAKLSL 191

Query: 115 ALNFSEHLTKMEEGKALIARFCKG------------------------------------ 138
           A    E   K+ + K +     K                                     
Sbjct: 192 AY---EEEIKLVKTKRMECLLAKPNLTDEERSSLQLFGEHLLDINLKTSMKQIFGQNKEL 248

Query: 139 ----SIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW---- 188
                     Y      H   Q    + EY   D E T  L   L  L +  +  +    
Sbjct: 249 KNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEITYFLCLTLKDLLNKTKIFYNLKP 308

Query: 189 -----------------------------LLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                                         +   +   G ++D+D V  ++    ++ K+
Sbjct: 309 TDSDYQTKQNEFGINSLGDIYSKYWNSLGEILTELEREGMQVDMDHVKNIKVKAEEDMKQ 368

Query: 220 LDEDIVKLTDGI------IRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            +++ +K             +   T  L+   F       V  +  T+K
Sbjct: 369 YEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKKQQVKKTPQTMK 417


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 111/407 (27%), Gaps = 88/407 (21%)

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             DL+  +          +  L E     GR+  ++     + TGR S       N P  
Sbjct: 529 INDLLELKSIEVLLHT-FIIPLIELTDPSGRIHTSININ--TETGRLSSRNPNLLNQPAL 585

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
           E+                            +R   IA  G KL+VAD   +E RVLA + 
Sbjct: 586 EKDRY------------------------KIRKSFIAKKGNKLIVADYGQLELRVLAHMT 621

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                I AF  G D +  T    F    +++ K         EL + +            
Sbjct: 622 KCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDK--------GELLIEWDKSKGKA----- 668

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                           +      +  +  +        FA   +      +    AW A+
Sbjct: 669 -------PAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQ 721

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
            + V Q   ++                                         R       
Sbjct: 722 RKEVEQWQYNVRMIAKNQ--------------------------FFTQTLLGRYRYLEKY 755

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627
               +   +  +  +R            +Q  + DI+   M    K       GY ++L 
Sbjct: 756 FQQQT--RSYINHGLRAAI------NTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQ 807

Query: 628 VHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           VHDE++ E P+     ++  +  LM         LPL+ +      +
Sbjct: 808 VHDELILEGPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNW 854



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 92/349 (26%), Gaps = 102/349 (29%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLWD-RTEQSAMPSDLLQ 59
           D ET     +          +  +   +        + + P    D   + S +      
Sbjct: 78  DTETI-DIDVKSETP---INRGRLICASAFAGPEVNFGNGPRLFIDNFAQNSDLIMLFKD 133

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNACL 114
           Y  DE ++ + HN  F++ +F    GI++    +  T  +AR           SL    L
Sbjct: 134 YFEDEKILKIWHNYGFDKHIFGNN-GINVRGF-FGDTMHMARLLDPSKQPQEYSLAKLSL 191

Query: 115 ALNFSEHLTKMEEGKALIARFCKG------------------------------------ 138
           A    E   K+ + K +     K                                     
Sbjct: 192 AY---EEEIKLVKTKRMECLLAKPNLTDEERSSLQLFGDHLLDINLKTSMKQIFGQNKEL 248

Query: 139 ----SIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW---- 188
                     Y      H   Q    + EY   D E T  L   L  L +  +  +    
Sbjct: 249 KNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEITYFLCLTLKDLLNKTKIFYNLKP 308

Query: 189 -----------------------------LLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                                         +   +   G ++D+D V  ++    ++ K+
Sbjct: 309 TDSDYKTKQNEFGINSLGDIYSKYWNSLGEILTELEREGMQVDMDHVKNIKVKAEEDMKQ 368

Query: 220 LDEDIVKLTDGI------IRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
            +++ +K             +   T  L+   F       V  +  T+K
Sbjct: 369 YEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKKQQVKKTPQTMK 417


>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
 gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
          Length = 2135

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/646 (12%), Positives = 178/646 (27%), Gaps = 138/646 (21%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---------PSDLLQYLRDETVMCVAH 71
            ++   +   I   ++  D     +     Q              ++ +      +  V H
Sbjct: 1560 LFQVDDSTYIDCLSFCVDSH--YVVHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMH 1617

Query: 72   NSLFERILFKKTLGIDIPSK--RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEE 127
             +  +  +  + +  ++ +   ++   +V +         S +N C              
Sbjct: 1618 KTKDQLKVILQAIP-ELKTIAVKFEDPNVASWLMQPDRNCSFQNMCQQYAPECLNLLNLC 1676

Query: 128  GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            G  L      G   S          V+A         +        F ++    D E  L
Sbjct: 1677 GSGL-GYTSYGLDASSEVSAQVRAQVEACVSVHILNGQMKSLEEHQFIKVFR--DNEMPL 1733

Query: 188  WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             L+   +   G+ +    +  L   IA   KKL+  I +L  G   +   + A+   L +
Sbjct: 1734 CLILAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELN-GSRFNINSSQAVAKVLGI 1792

Query: 248  ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
                        T + +L          +LI      +   +  +  L +    + R+ G
Sbjct: 1793 HRK---PTGRVSTSREVLERLEAP--IANLICQYRKLNALLVKNVQPLMK-CCLNNRIHG 1846

Query: 308  TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                  A  TGR S      QN+ +    +      I                    RS 
Sbjct: 1847 HSITNTA--TGRISMAEPNLQNVAKNFVVDVQDRGAIV-----------------SCRSA 1887

Query: 368  IIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
             +  +  + L+ AD   +E R+LA ++ +   + A  +  DI+ +  A        +VS 
Sbjct: 1888 FMPMDSTRCLLSADFCQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSD 1947

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            + R   K +   + Y                                             
Sbjct: 1948 QLREGTKKICYGIIYGMSM----------------------------------------- 1966

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                + A +  +     E++ + + + + G+      L +                    
Sbjct: 1967 ---RKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYARHKGYVETIT-------- 2015

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                               RR    +++ + +       +  R+         + +Q  +
Sbjct: 2016 ------------------GRRRYLENIRSEDA---GTRKKAERQA------VNSTIQGSA 2048

Query: 607  RDILCEGMKN-------------ATKNGYDIVLTVHDEIVSETPDT 639
             DI    +                 +N  ++VL +HDE++ E P  
Sbjct: 2049 ADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHIHDELMFEVPAD 2094


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/682 (13%), Positives = 180/682 (26%), Gaps = 172/682 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET         G+  Y +   I L  +  +     +                
Sbjct: 35  LRILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGVFVGAAATA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL E + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDMLRKAEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   ++ R+   +    A RTGR S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +   D    E RVLA ++G+ 
Sbjct: 374 --------------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGD- 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                                               +TM     
Sbjct: 407 ----------------------------------------------------QTMLRAFE 414

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +         +        +  +  +       + A    +     + V + +   + G
Sbjct: 415 EESDLHQVTADAAGVDRKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPG 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K + +                                 I  P+ RRL     +  
Sbjct: 475 VDTLNKRMQQEAGSAG--------------------------FITTPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVS 634
                                   ++Q+ SRD+    +    + G+  ++ L VHDE++ 
Sbjct: 507 -----------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLL 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNP 655
             P+     +V  +  +M +  
Sbjct: 550 SLPEADAEAAVKEVGQIMEQRI 571


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/538 (13%), Positives = 148/538 (27%), Gaps = 127/538 (23%)

Query: 168 EATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           + T +L  +L            E  L  +   + +    +D + + +   L+    K+L+
Sbjct: 12  DLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELE 71

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNI 270
           ++      G          LR  LF    + L+   +            T +++      
Sbjct: 72  QEAH-FVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMTQWRTS 130

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              A          + +A   L +    +   G +  T    G + TGR S      Q +
Sbjct: 131 GVPAGPHC-----CATTADSCLLSWLYPIGLLGSISSTWNQTG-TVTGRLSAKHPNIQGI 184

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
            +                   TI+          R+  ++S G   + AD + IE R+LA
Sbjct: 185 SKHPIKISKPWNFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILA 235

Query: 391 WIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
            ++G+   +K F   E    + T  ++  + PI++V+   R   K +  ++ Y  G +  
Sbjct: 236 HLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERL 295

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                            +         +
Sbjct: 296 AAC--------------------------------------------LGVTVLEATHFLE 311

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            +  K++ +    + +             +                           RR 
Sbjct: 312 RFLQKYKKIKDFAQTVIGQCHSAGYVTSIL--------------------------GRRR 345

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------G 621
               +           +Q  R+          +VQ  + D+    M   +          
Sbjct: 346 PLPRICAQDQ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLT 396

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673
             +V  +HDE++ E  DT       L   +M      +       +PLK      + +
Sbjct: 397 ARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 454


>gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus]
          Length = 2620

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 97/746 (13%), Positives = 182/746 (24%), Gaps = 146/746 (19%)

Query: 23   AYAEQAVITLCAYAWDDEPVKLW------------------DRTEQSAMPSDLLQY---L 61
             + E  ++   A  W  +                          +  ++   L      L
Sbjct: 1918 QHCEDTLVVGLAVCWGGKDAYYISLQQMQDQTEICPSLAPPPLDKNLSVTERLRHLQLYL 1977

Query: 62   -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALN 117
               +    V +N +          GI +    +    V        S    L N      
Sbjct: 1978 QEKQERSLVMYNFIQHYKTLVMACGISLEG-SFEDPKVACWLLDSGSKECTLHNMVTNFL 2036

Query: 118  FSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +E       G      +     S D           V  + +  +              
Sbjct: 2037 PNELPLLEGVGTGQGVQSLGLSSSEDHSGRYRAAIESVLIFNIMNQLHS-----ELRKEN 2091

Query: 176  RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                 S  E         +   G           ++++  +  +++    +L  G   S 
Sbjct: 2092 LTDVFSKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLA-GHSFSL 2150

Query: 236  RQTYALRMYLFLITGIDLV---------------------------DMSEGTLKSILSHS 268
                 +   LFL   +                                   T K +L   
Sbjct: 2151 TSPDDVAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKL 2210

Query: 269  NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-----RLRGTLQFYGASRTGRWSGC 323
                    LIL     + +    +  L      +      R+    Q + A  TGR S  
Sbjct: 2211 KPLHPLPGLILEWRRINSAISKVVFPLQREKRFNSALGMERIYPVSQTHTA--TGRVSFA 2268

Query: 324  VFQPQNLPRQ------------------------ERSEEILTQTIQALNRGETIADPLGL 359
                QN+PR                          RS     + +   +     +     
Sbjct: 2269 EPNIQNVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGRKHSSVLPSGVNTW 2328

Query: 360  ASDC-----------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
             +D            +R   +   G  ++ AD   +E R+LA  + +   I+AF  G D+
Sbjct: 2329 TADRTERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADV 2388

Query: 409  YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            + +  A+      + V    R   K +   + Y  GAK          + +         
Sbjct: 2389 FKSIAAEWKMIDSEAVGDSTRQQAKQICYGIIYGIGAKSLGE-----QMGIDDNKAANYI 2443

Query: 469  TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
             S    +   +                  ++G    L   A R  +  +           
Sbjct: 2444 ESFKSRYTGIQKFLKETVSNCRRDGFVQTILGRRRYLP--AIRDSNPYIKA------HAE 2495

Query: 529  ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
               V      SA  +     + ++R    +  V  S           + S+    T +L 
Sbjct: 2496 RQAVNTTVQGSAADIVKTATVNIQRRLEALSSVNKS-------HGHLENSFQRDKTGRLS 2548

Query: 589  RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
            R+R                      M +    G+ I L +HDE++ E  +     V  + 
Sbjct: 2549 RKRNRE-------------------MLHPISGGFFI-LQLHDELLYEVAEDDVIQVAQIV 2588

Query: 649  S-LMTKNPSWAKGLPLKAEGYEAKRY 673
               M      +  L +K        +
Sbjct: 2589 KHEMENAVKLSVKLNVKV--KIGPSW 2612


>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
 gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
          Length = 2080

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 86/659 (13%), Positives = 179/659 (27%), Gaps = 111/659 (16%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAM--------PSDLLQYLRDETVMCVAHNSLFERILFK 81
            I   ++   D      +  ++             +L++ L    +  + H+   +  + +
Sbjct: 1510 IACLSFCLADNVAYYMNMQQEGKKEAVGTQLKVEELVKLLTRPELTLIMHDGKEQLKILR 1569

Query: 82   KTLGIDIPSK-RWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
              +   +    +     V           S  N C              G         G
Sbjct: 1570 HAMPQLVRIAIKLEDPKVANWLLQPDKVLSFHNMCQQFAPECKGLTDLCGSGR-GYSSYG 1628

Query: 139  SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197
               S          V+A         +     R    +L+    D E  + L    +   
Sbjct: 1629 LDASNAILPKIRASVEACVSMHILHGQIENLERIGTGQLLKFFRDLEMPIQLSLCNMEFT 1688

Query: 198  GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
            G+    + +  L + +    KKL+  I +L  G   +   + A+   L    G+      
Sbjct: 1689 GFPAKQESLQGLSQQMLSTMKKLEAKIYELH-GSRFNLGSSQAVAKVL----GLHRKASG 1743

Query: 258  E-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
            +  T + IL   +       LI+     S      +  L +    D R+ G    Y A  
Sbjct: 1744 KVSTSRQILEKLDSP--ISQLIVGYRKLSTVLAKNVQPLLK-CCQDNRVYGQSLSYTA-- 1798

Query: 317  TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKK 375
            TGR S      QN+ +         +                  +   RS  +  +  + 
Sbjct: 1799 TGRISMSEPNLQNVAKDFEINLDSDK-----------------VNISCRSAFLPMDFKRC 1841

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            L+ AD   +E R+LA ++ +   ++   +  D++    A+  +    +VS+  R   K +
Sbjct: 1842 LISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSENLRNGTKQI 1901

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y  G +          L   +      S    + +    ++   +          
Sbjct: 1902 CYGIVYGMGMRSLAE-----SLKCTENEAQTVSEQFHQTYAGISAYIQKVVKFARNNGYV 1956

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            + + G          R   + +      +               +        + +R  K
Sbjct: 1957 ETITGR---------RRYLEHINSGELQIKNQAERQAINSTIQGSAADIAKSAI-LRMEK 2006

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
              +                                                         
Sbjct: 2007 HLLRYRERLG-------------------------------------------------- 2016

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
              T+N  ++VL +HDE++ E P      +  + SL M         +PLK +    + +
Sbjct: 2017 -ITENSVNLVLHLHDELIFEVPIDKAKKIAKVLSLTMESCVK--LSVPLKVKLKIGRSW 2072


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 183/699 (26%), Gaps = 175/699 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET          +  Y     I L  +  +     +       A     +  
Sbjct: 35  LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   +D R+   +    A RTGR S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                                               +TM     
Sbjct: 407 ----------------------------------------------------RTMIRAFE 414

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +         +        +  +          + A    +     + V   + A + G
Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K L    A +                            +V P+ RRL     +  
Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VVTPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                            G      +VQ+ SRD+    +      G   +  L +HDE+++
Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLA 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
             P+     +   +  +M +      G+ +  +     R
Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 97/679 (14%), Positives = 177/679 (26%), Gaps = 171/679 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y+      L  +   DE   L      + +  +  + L D
Sbjct: 38  LAVDTETT--------GLDIYSSTFRCRLVQFGTQDEAWVLPVDESPTQLQQETREAL-D 88

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNAC 113
           +    V  N+ ++  +     GI +     + + T +LA+              SL+   
Sbjct: 89  KLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVDPRPYGAGGFGHSLEELI 148

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                S+   K    K L+A+  K    +     +  +       +  Y   D   T  +
Sbjct: 149 AEF-ISKDQAKDV--KGLMAKLAKEHKTTKAKIWSTIDLFHP--EYLTYAGMDTIFTARI 203

Query: 174 FKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            ++L  L           E  +  +   I+ +G+++D++   +L +    E+   +  + 
Sbjct: 204 CRKLTRLVPDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILF 263

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDL 277
                 + +          +             G          + I   +        +
Sbjct: 264 TEYG--LDNPNSNEQCADVIEEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAM 321

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           I             +    E   SD R    +    A RT R S      Q LP  +   
Sbjct: 322 IQEAQKLGKWRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGDW-- 378

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR C +A  G  +   D    E RVLA ++G+  
Sbjct: 379 -------------------------TVRRCFLAEPGHVMSSIDYQTQELRVLAALSGD-- 411

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
                                                              KTM      
Sbjct: 412 ---------------------------------------------------KTMIEAFKT 420

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                     +        +  +            A +  +     + V +A+   + GV
Sbjct: 421 GADLHQMTADAAQVPRKIGKMANFLTVYGGGAKTLAEQANIDFPTAKRVLEAFAKTYPGV 480

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +  K L                                   IV    RRL    V    
Sbjct: 481 ARYSKKLAAEAGRQGY--------------------------IVNGMGRRLP---VDSSR 511

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635
           +Y                     ++Q+ SRD+ C  +    + G+   + L +HDEIV+ 
Sbjct: 512 TY----------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVAS 555

Query: 636 TPDTPYFS-VGTLCSLMTK 653
            P          +  LM +
Sbjct: 556 LPAEKAEWGAKKIGQLMAE 574


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 184/699 (26%), Gaps = 175/699 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET         G+  Y +   I L  +  +     +       A     +  
Sbjct: 35  LRILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   ++ R+   +    A RT R S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPANDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                                               +TM     
Sbjct: 407 ----------------------------------------------------RTMIRAFE 414

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +         +        +  +          + A    +     + V   + A + G
Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K L    A +                            +V P+ RRL     +  
Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VVTPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                            G      +VQ+ SRD+    +      G   +  L +HDE+++
Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLA 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
             P+     +   +  +M +      G+ +  +     R
Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 185/699 (26%), Gaps = 175/699 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET         G+  Y +   I L  +  +     +       A     +  
Sbjct: 35  LRILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   ++ R+   +    A RT R S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPANDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                                               +TM     
Sbjct: 407 ----------------------------------------------------RTMIRAFE 414

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +         +        +  +          + A    +     + V   + A + G
Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K L    A +                            +V P+ RRL     +  
Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VVTPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG-YDIV-LTVHDEIVS 634
                            G      +VQ+ SRD+    +      G   ++ L +HDE+++
Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHDAGLAPMIRLVIHDEVLA 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
             P+     +   +  +M +      G+ +  +     R
Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/683 (13%), Positives = 179/683 (26%), Gaps = 174/683 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET          +  Y     I L  +  +     +             +  
Sbjct: 35  LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85

Query: 61  LRDETVMC-VAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSL 109
           L+   V   V HN+ F+  + ++TLG+ +     +   T + +                L
Sbjct: 86  LQ--KVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKL 143

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +             +    KA +AR  K    +        +       +  Y   D   
Sbjct: 144 EELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTIL 198

Query: 170 TRELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
              L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +   
Sbjct: 199 VSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYT 258

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAK 275
                       +   T  L   L   TG+ +   +    + +              LAK
Sbjct: 259 AVARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAK 315

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             I             +    E   ++ R+   +    A RTGR S      QNLP  + 
Sbjct: 316 AAIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW 373

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       VR C +A  G+ +   D    E RVLA ++G+
Sbjct: 374 ---------------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGD 406

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
                                                                +TM    
Sbjct: 407 -----------------------------------------------------QTMLRAF 413

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
             +         +        +  +  +       + A    +     + V + +   + 
Sbjct: 414 KEESDLHQVTADAAGVDRKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYP 473

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV  L K + +                                 I  P+ RRL     + 
Sbjct: 474 GVDTLNKRMQQEAGSAG--------------------------FITTPTGRRLPVDPDR- 506

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIV 633
                                    ++Q+ SRD+    +    + G+  ++ L VHDE++
Sbjct: 507 ------------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVL 548

Query: 634 SETPDTPYF-SVGTLCSLMTKNP 655
              P+     +V  +  +M +  
Sbjct: 549 LSLPEADAEAAVKEVGQIMEQRI 571


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/676 (14%), Positives = 179/676 (26%), Gaps = 170/676 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y++     L  +   D    +           D+   +  
Sbjct: 38  LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAIG- 87

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNAC 113
                V  N+ ++  +  +  GI++     R + T +LA+              SL+   
Sbjct: 88  ALRKVVLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELI 147

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                 E     E  K L+A+  +    +       A        + +Y   D   T  +
Sbjct: 148 AEFISKEQA---ETVKKLMAKLAQEHKTT--KAKIWATIDLFHPEYLKYAGMDTIFTARV 202

Query: 174 FKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            K L PL           E ++  +   I+ +G+ +D++   +L +    +++  +    
Sbjct: 203 CKALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELSDKWLADQQVWEAIAF 262

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-NITQLAKDLILN 280
                   +   T  L   L    G+ +   +E       K++L            +   
Sbjct: 263 TEYGVEKVN--STEDLAEGL-EEMGVKITGRTETGKRQVDKTLLEKLVAEGNELATIAQE 319

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +    +   ++ R    +    A RT R S      Q LP  +      
Sbjct: 320 AKKLGKWRKTWVQKFLDTRDAEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASD------ 372

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR C +A  G  +   D    E RVLA ++ +     
Sbjct: 373 ---------------------STVRRCFLAEEGDVMASIDYQTQELRVLAALSND----- 406

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
                                                           +TM         
Sbjct: 407 ------------------------------------------------QTMIEAFKTGAD 418

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  +        +  +            A + K+     +    A+   + GV +L
Sbjct: 419 LHQMTADAAQVTRKVGKMANFLTVYGGGAKTLAEQAKVDFPTAKRTLDAFARTYPGVARL 478

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            K L                                   IV P  RRL     +      
Sbjct: 479 SKKLGTEAGRKGY--------------------------IVTPVGRRLPVDSSRS----- 507

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638
                               +VQ+ SRD+ C  +    K GY   + L +HDEIV+  P 
Sbjct: 508 --------------YSALNYMVQSSSRDVTCRALIRLHKAGYTPYLRLPIHDEIVASLPA 553

Query: 639 TPYF-SVGTLCSLMTK 653
           +    +   +  LM +
Sbjct: 554 SEAERAAAHIGQLMAE 569


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 133/414 (32%), Gaps = 72/414 (17%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
              A A+    V             +L ++    +++     +  +  +     G+ +P 
Sbjct: 332 LGLA-AYAGGKVY-----RGQPSLQELKKFPEIRSMV-----AK-DLSVLALKEGVWVPP 379

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                  +LA      +S   A                              P      A
Sbjct: 380 G--DDPMLLAYLYDPSNS-DPASTVR----------------RYGAGDWGSDPGERAQAA 420

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           +    W+        + +    L++++      E+ L  +   I  RG  ++ + +L+L 
Sbjct: 421 HT--LWETLQSRIGENPKIEW-LYQQI------EKPLSAVLARIEARGISLNAEYLLQLS 471

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSIL 265
           E +A+E   L+ +I +L  G   +      L + L+    +             T  S L
Sbjct: 472 EELAKEISYLEAEIHRLA-GRSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASAL 530

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324
                     + IL     +      L+ L + +    GRL       G + TGR S   
Sbjct: 531 EELLGQHPIIERILTYRELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTG-TATGRLSSVD 589

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+P                                +R    A+ G +LVVAD + I
Sbjct: 590 PNLQNIP------------------------VRTEIGRRIRKAFRAAPGMRLVVADYSQI 625

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           E RVLA ++G++  I  F  G DI+  T A  F    DKV  EQR   K +   
Sbjct: 626 ELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGAEQRRAAKCLVEG 679



 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 60/227 (26%), Gaps = 45/227 (19%)

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
            A    L ++     +             +  +         + +  +     E   + + 
Sbjct: 1083 ARVYDLSVEGKPAYLAEGFVSH---NTINFGVLYGMSAHRLSNELSISYAEAEGFIERYF 1139

Query: 512  AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            A +  V +  + +                                         RR   +
Sbjct: 1140 ASYPKVREWIERVLADARQTGYVETMF--------------------------GRRRFVA 1173

Query: 572  DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYDIVLT 627
            D+      +  A  ++              VQ  + D++   M             +VL 
Sbjct: 1174 DLGSRVRSVREAAERM---------AFNMPVQGTAADLMKLAMVKLQPELEPLEAHLVLQ 1224

Query: 628  VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
            VHDE++ E P     +V  +   +M +   WA  +PL+      + +
Sbjct: 1225 VHDELLVEAPADKAEAVAGVVREVMQQA--WALAVPLEVGTGIGENW 1269


>gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
 gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
          Length = 302

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 107/402 (26%), Gaps = 115/402 (28%)

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S      +N L + + +DG++         + TGR S      QN+P         
Sbjct: 3   YRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGRLSSVEPNLQNIP--------- 52

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                  +R   +       L   D + +E RVLA ++ E   +
Sbjct: 53  ---------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNML 97

Query: 400 KAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           +AF  G DI+  T  K F     D+V+   R   K +                    G+ 
Sbjct: 98  EAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF--------------GIVYGIS 143

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
               ++N                                +     +     +  ++  + 
Sbjct: 144 DYGLAKN------------------------------LGISRQEAQNFINNYFEQYPQIK 173

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              K   +           +                           RR +  D+     
Sbjct: 174 DYMKAAVKLAREKGYAETIMH--------------------------RRRLLPDIHNKNF 207

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632
            + +      R          + +Q  + DI+   M          K    ++L +HDE+
Sbjct: 208 NIRSFA---ERTAI------NSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 258

Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           + + P      + TL   +M +       +PL A+      +
Sbjct: 259 LFDVPSEELDLIRTLVPKIMQQAAQ--LDVPLIADANWGHNW 298


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 107/416 (25%), Gaps = 112/416 (26%)

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320
           + + +           ILN    S       + L + V   DGR+  +     A+ TGR 
Sbjct: 26  EVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFS-TTATATGRL 84

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
           S      QN+P                              + +R   IA  G K++ AD
Sbjct: 85  SSSNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISAD 120

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R+LA +A      +AFANG+DI+  T  + F                       
Sbjct: 121 YSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV--------------------- 159

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                                     +         ++ +  +         A +  +  
Sbjct: 160 -------------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITI 194

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                    + + +  +    +                                     +
Sbjct: 195 AEAAEYINYYFSCYPEIKAYMEKAVSIARLHGY--------------------------V 228

Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TK 619
                RR    D+     Y+        R             Q  + DI+         +
Sbjct: 229 ETLFGRRCFVRDINNTIPYIRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQ 279

Query: 620 NGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                I+L VHDE++ E  D     +   +  +M         +PL+ E      +
Sbjct: 280 LKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNW 333


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/682 (13%), Positives = 175/682 (25%), Gaps = 172/682 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET          +  Y     I L  +  +     +             +  
Sbjct: 35  LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKD 276
                      +   T  L   L   TG+ +                         LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTTTGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   ++ R+   +    A RTGR S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +   D    E RVLA ++G+ 
Sbjct: 374 --------------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGD- 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                                               +TM     
Sbjct: 407 ----------------------------------------------------QTMLRAFE 414

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +         +        +  +  +       + A    +     + V + +   + G
Sbjct: 415 EESDLHQVTADAAGVDRKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPG 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K + +                                 I  P+ RRL     +  
Sbjct: 475 VDTLNKRMQQEAGSAG--------------------------FITTPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVS 634
                                   ++Q+ SRD+    +    + G+  ++ L VHDE++ 
Sbjct: 507 -----------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLL 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNP 655
             P+     +V  +  +M +  
Sbjct: 550 SLPEADAEAAVKEVGQIMEQRI 571


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 171/379 (45%), Gaps = 53/379 (13%)

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
            ++A        D + L S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  K+ AF
Sbjct: 12  AMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAF 71

Query: 403 ANGEDI----------------------------------------YVTTYAKAFNTPID 422
            + +                                          Y   YA +F     
Sbjct: 72  RDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQ 131

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
            V+KEQR IGKV ELALGY GG   F   A+   +DL+  ++            +A    
Sbjct: 132 AVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEAL 189

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
            W +               AC++ K+AWR  H  +   WK L       ++   +     
Sbjct: 190 QWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-- 247

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGK 596
                 + M+  +  + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGK
Sbjct: 248 ---CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGK 304

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656
           L ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P 
Sbjct: 305 LVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPP 364

Query: 657 WAKGLPLKAEGYEAKRYRK 675
           WA+GLPL AEG++  RYRK
Sbjct: 365 WAQGLPLAAEGFQTHRYRK 383


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/676 (13%), Positives = 183/676 (27%), Gaps = 170/676 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y++     L  +        +        +P ++++ L +
Sbjct: 38  LAVDTETT--------GLDIYSDTFRCRLVQFGTQS-EAWVLPVELGGGIPENVIEALYE 88

Query: 64  ETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGL--------PSSLKNAC 113
              + V  N+ ++  +  +     ++    + + T +LA+              SL+   
Sbjct: 89  VDKL-VMQNASYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVDPRPFEAGGFGHSLEELI 147

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                     + E  K L+ +  K    +     +  +       +  Y   D   T  +
Sbjct: 148 AEF---IDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHP--EYLTYAGMDTIFTARI 202

Query: 174 FKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
             +L PL           E  L  +   I+ +G+ +D++    L +    E+     D +
Sbjct: 203 CSKLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKS--VWDAI 260

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILN 280
             T+  + +   T      L    G+ +   +E         +L   +        +I  
Sbjct: 261 AFTEYGLENVNSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQE 319

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      +        S+ R    +    A RT R S      Q LP  +      
Sbjct: 320 AKKLGKWNKTWVAKFLSVRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDW----- 373

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  VR C +A  G+ +   D    E RVLA ++G+     
Sbjct: 374 ----------------------IVRRCFVADPGQVMASVDYQTQELRVLAALSGD----- 406

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
                                                           +TM         
Sbjct: 407 ------------------------------------------------QTMIEAFKTGAD 418

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                  ++       +  +            A +  +     + V   +   + GV + 
Sbjct: 419 LHQMTADASQVVRKVGKMANFLTVYGGGAKTLAEQAHIDFPTAKRVLDGFAKTYPGVARY 478

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            K L        + G                       +IV    RRL    V    +Y 
Sbjct: 479 SKKL---AMEAGRNG-----------------------YIVNAMGRRLP---VDSSRTY- 508

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638
                               ++Q+ SRD+ C  +    + G+   + L +HDE+V+  P 
Sbjct: 509 ---------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEVVASLPA 553

Query: 639 TPYFS-VGTLCSLMTK 653
                    +  LM +
Sbjct: 554 GQAEWGAKEIARLMQE 569


>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
          Length = 2672

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 83/736 (11%), Positives = 181/736 (24%), Gaps = 145/736 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----RDETVMC---VAHNSL-------- 74
            +   A  W       +   ++    S++   L     D ++     + H           
Sbjct: 1982 VVGLAVCWGGRDAYYFSL-QKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLRKESD 2039

Query: 75   -------FE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS 119
                   ++      +   + GI +  + +    V        S   +L +     L   
Sbjct: 2040 KECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHE 2098

Query: 120  -EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
               L  ME  + + +       +           +  +    +      +   +   R  
Sbjct: 2099 LPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR-- 2156

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 E         +   G           + ++  +   ++    +   G   S   +
Sbjct: 2157 ---KVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQ-LAGHSFSFTSS 2212

Query: 239  YALRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNIT 271
              +   LFL   +                                   T K +L+     
Sbjct: 2213 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2272

Query: 272  QLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQ 326
                 LIL     + +    +  L      +      R+    Q + A  TGR +     
Sbjct: 2273 HPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPN 2330

Query: 327  PQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------------ 358
             QN+PR                    + +L        +G ++                 
Sbjct: 2331 IQNVPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADRGM 2390

Query: 359  LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+   
Sbjct: 2391 PFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2450

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               + V  + R   K +   + Y  GAK          + +++        S    +   
Sbjct: 2451 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2505

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                               ++G          R    G+                     
Sbjct: 2506 NQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQ 2556

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             +         V  + + +                 G    +  +           G L 
Sbjct: 2557 GSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDR--------TGLLR 2600

Query: 599  ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657
            +  +Q          M    + G+ I L +HDE++ E  +     V  +    M      
Sbjct: 2601 KRKLQG---------MFCPVRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAVK- 2649

Query: 658  AKGLPLKAEGYEAKRY 673
               + LK +      +
Sbjct: 2650 -LSVKLKVKVKIGASW 2664


>gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 280

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 110/379 (29%), Gaps = 103/379 (27%)

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            + SDG++         ++TGR S      QN+P                          
Sbjct: 1   MIQSDGKVHTRYVQT-LTQTGRLSSVDPNLQNIP------------------------IR 35

Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                 +R   +       +  +D + IE RVLA I+ ++    AF  G+DI+ +T  + 
Sbjct: 36  LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRV 95

Query: 417 FNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
           F     + V+   R   K +   + Y               L + + +      + FE +
Sbjct: 96  FGIEKAEDVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKY 150

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
              + +   +  +  +    + L      L     R  +  +              +   
Sbjct: 151 PGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYN--IRSF------AERTAINTP 202

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
              SA  +  +  + + +                                          
Sbjct: 203 IQGSAADILKIAMIELDK------------------------------------------ 220

Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
           +L E  +QA                   ++L VHDE+V E P+    S+  L   +M + 
Sbjct: 221 RLKETGLQAT------------------MLLQVHDELVFEVPEKELESLDKLVKEVMEQA 262

Query: 655 PSWAKGLPLKAEGYEAKRY 673
            S    +PL  +    K +
Sbjct: 263 VS--LHVPLITDSSWGKTW 279


>gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum]
          Length = 1583

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 87/670 (12%), Positives = 187/670 (27%), Gaps = 167/670 (24%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDR-TEQSAMPSDLLQYLRDETVMC 68
            RS +      ++ +  Q  +   A  W  + V    D      +  S L + L ++ ++ 
Sbjct: 1054 RSLENNKNTKLFKFNNQV-LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV 1112

Query: 69   VAHN---SLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLT 123
               N   +     +  +   I  P  ++    V          +SL N            
Sbjct: 1113 ---NITDAKLNYKIISQCCNIK-PVCKFRDPFVADWLINGQPKNSLNNL----------- 1157

Query: 124  KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                         + +++      T      A+           +  ++++       D 
Sbjct: 1158 ------------VQWNLNFQGKIQTNDAVFNAFITLKLMSTLRHQL-KQIYIY-KTFKDI 1203

Query: 184  ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
            E  + ++   +   G+ ++   +++L + + +    + E   + + GI  + + T     
Sbjct: 1204 EMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQS-GIRFNMQSTLE-WA 1261

Query: 244  YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             +     +                     L  +L+ N    S      +N        + 
Sbjct: 1262 KVKKKLKLTDSSS---------------HLLVELVKNWRKLSCLRNTHIN--MYLTIQND 1304

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+      Y  S TGR S      QN+P+    E  +                       
Sbjct: 1305 RVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEI---------------------LS 1341

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +RS  +  + + LV  D   IE RVLA ++ +   + A  +  D+++   +K  N P  +
Sbjct: 1342 LRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIE 1401

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            V  E R   K +   + Y  G                                       
Sbjct: 1402 VCDELRQKTKQVCYGMLYGMGTVTLS---------------------------------- 1427

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                          +       +   ++    GV + + +       +            
Sbjct: 1428 ----------ETLNITQDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTL------ 1471

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                S R   + D+  +   + +   Q+ R+          I+Q
Sbjct: 1472 --------------------SGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQ 1502

Query: 604  AISRDILCEGMKNATK--------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
              + D+    M    K            +V+ +HDE++ +  +T       T+   M   
Sbjct: 1503 GSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA 1562

Query: 655  PSWAKGLPLK 664
             +    LP+K
Sbjct: 1563 VNLCVPLPVK 1572


>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum]
          Length = 1691

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 87/670 (12%), Positives = 187/670 (27%), Gaps = 167/670 (24%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDR-TEQSAMPSDLLQYLRDETVMC 68
            RS +      ++ +  Q  +   A  W  + V    D      +  S L + L ++ ++ 
Sbjct: 1162 RSLENNKNTKLFKFNNQV-LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV 1220

Query: 69   VAHN---SLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLT 123
               N   +     +  +   I  P  ++    V          +SL N            
Sbjct: 1221 ---NITDAKLNYKIISQCCNIK-PVCKFRDPFVADWLINGQPKNSLNNL----------- 1265

Query: 124  KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                         + +++      T      A+           +  ++++       D 
Sbjct: 1266 ------------VQWNLNFQGKIQTNDAVFNAFITLKLMSTLRHQL-KQIYIY-KTFKDI 1311

Query: 184  ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
            E  + ++   +   G+ ++   +++L + + +    + E   + + GI  + + T     
Sbjct: 1312 EMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQS-GIRFNMQSTLE-WA 1369

Query: 244  YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             +     +                     L  +L+ N    S      +N        + 
Sbjct: 1370 KVKKKLKLTDSSS---------------HLLVELVKNWRKLSCLRNTHIN--MYLTIQND 1412

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            R+      Y  S TGR S      QN+P+    E  +                       
Sbjct: 1413 RVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEI---------------------LS 1449

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            +RS  +  + + LV  D   IE RVLA ++ +   + A  +  D+++   +K  N P  +
Sbjct: 1450 LRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIE 1509

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            V  E R   K +   + Y  G                                       
Sbjct: 1510 VCDELRQKTKQVCYGMLYGMGTVTLS---------------------------------- 1535

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                          +       +   ++    GV + + +       +            
Sbjct: 1536 ----------ETLNITQDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTL------ 1579

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                                S R   + D+  +   + +   Q+ R+          I+Q
Sbjct: 1580 --------------------SGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQ 1610

Query: 604  AISRDILCEGMKNATK--------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
              + D+    M    K            +V+ +HDE++ +  +T       T+   M   
Sbjct: 1611 GSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA 1670

Query: 655  PSWAKGLPLK 664
             +    LP+K
Sbjct: 1671 VNLCVPLPVK 1680


>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda
            melanoleuca]
          Length = 2634

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 92/759 (12%), Positives = 193/759 (25%), Gaps = 153/759 (20%)

Query: 9    ETRSPQPLPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------------ 55
            ET    P+   GV     +  ++   A  W       +   ++   P             
Sbjct: 1927 ET----PIRDYGVPVKGCDDILLVGLAVCWGGRDAYYFSLQKEQTHPEISSSLVAPSLDP 1982

Query: 56   ------DLLQYLR------DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVL 99
                   +   L       D+    +     ++      +   + GI +  + +    V 
Sbjct: 1983 GLTVKERIWYLLSCFQEESDKERSVII----YDFIQSYKILLLSCGISLE-QSYEDPKVA 2037

Query: 100  ARTNGLPSS---LKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                   S    L +     L      L  +E G+ + +     + +           + 
Sbjct: 2038 CWLLDPDSKEPTLHSIVSSFLPHELPLLDGIETGQGIQSLGLNVNSEHSGRYRASVESIL 2097

Query: 155  AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             +    +      +   +           E         +   G           + ++ 
Sbjct: 2098 TFNAMNQLNSLLKKENLKDVFC-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQ 2152

Query: 215  QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM--------- 256
             +   ++    +L  G   S   +  +   LFL   +                       
Sbjct: 2153 AKLDAIETQAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNGEIKNQNSKKTLGSTRRGND 2211

Query: 257  ---------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD----- 302
                        T K +L+          LIL     + +    +  L      +     
Sbjct: 2212 NGRKLKLGKQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGM 2271

Query: 303  GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----------ERSEEILTQTIQALNRG- 350
             R+    Q + A  TGR +      QN+PR                + L + +  +NRG 
Sbjct: 2272 ERIYPVSQSHTA--TGRVTFTEPNIQNVPRDFEIKMPTVVGESPPSQALGKGLLPMNRGK 2329

Query: 351  ---------------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           E  +D     S  +R   +   G  ++ AD + +E R+LA ++ +
Sbjct: 2330 EKSCGINSGHQAQMEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHD 2389

Query: 396  DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               I+    G D++ +  A+      + V  + R   K +   + Y  GAK         
Sbjct: 2390 RRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE----- 2444

Query: 456  GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
             + +++        S    +                      ++G    L        + 
Sbjct: 2445 QMGIKENDAACYIDSFKSRYTGINHFMRETVKNCKRDGFVQTILGRRRYLPGINDNNPYH 2504

Query: 516  GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                            +      SA  +  V  + +++     H    S          G
Sbjct: 2505 KAH--------AERQAINTTVQGSAADIVKVATVNIQKQLETFHSTFKS---------HG 2547

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                +  +           G L +  +Q                 G   +L +HDE++ E
Sbjct: 2548 HREGMLQSER--------TGLLPKRKLQG----------VFCPIRGGFFILQLHDELLYE 2589

Query: 636  TPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              +     V  +    M         + LK +      +
Sbjct: 2590 VAEEDVVQVAQIVKNEMESAME--LSVKLKVKVKIGASW 2626


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 89/785 (11%), Positives = 185/785 (23%), Gaps = 216/785 (27%)

Query: 10   TRSPQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLW------------------DRTEQ 50
            T   +   K G +    E  V+   + +W  +                          + 
Sbjct: 1896 TTPMRNKRKDGFLLKGYEDLVVIGISVSWGAKDAYFVSLQQELVDTDISASLAPPPLDDT 1955

Query: 51   SAMPSDLLQY---LR-DETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLARTN 103
              +   L Q    L+ D +V        ++ I   K L +         +    +     
Sbjct: 1956 LTVEERLKQIQSCLQKDSSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKIACWLL 2010

Query: 104  GLP---SSLKNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   +L N   +    +         G+ + +    G    P         V  +++
Sbjct: 2011 DSSSKERTLHNMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIESVLVFRV 2070

Query: 159  FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
              +          E    L      E         +   G    +      + ++  +  
Sbjct: 2071 MTQLNCL-----LEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLS 2125

Query: 219  KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------------------------ 254
             L+    +L  G   S      +   LFL   +                           
Sbjct: 2126 ALESQAYQLA-GHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKL 2184

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----AVSSDGRLRGTL 309
                 T K +L           +IL     + +    +  L       +     R+    
Sbjct: 2185 SKQFSTTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPIS 2244

Query: 310  QFYGASRTGRWSGCVFQPQNLPRQ----------------------------ERSEEILT 341
            Q + A  TGR S      QN+P+                              +  +I  
Sbjct: 2245 QSHTA--TGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINR 2302

Query: 342  QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                 L   +   D     S  +R   +  +G  ++  D + +E R+LA ++ +   +  
Sbjct: 2303 LLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHV 2362

Query: 402  FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
              +G D++ +  A+        V    R   K +   + Y  G                 
Sbjct: 2363 LNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMG----------------- 2405

Query: 462  FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                             +  +         + +++++ G+    
Sbjct: 2406 ---------------------------AKSLGEQMGIEENDAACYIETFKSRYNGIQNF- 2437

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
              L E      + G                       ++     R+     +K    Y+ 
Sbjct: 2438 --LRETVQKCGKNG-----------------------YVKTLLGRKRFLPGIKDSNVYIK 2472

Query: 582  TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--------------------- 620
            +   +               VQ  + DI+     N  +                      
Sbjct: 2473 SHAERQ---------AVNTTVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGG 2523

Query: 621  -----------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668
                       GY I L +HDE++ E  +     V  +    M         + L+ +  
Sbjct: 2524 RHRNQFRPLRGGYFI-LQLHDELIYEVAEEDVIQVAQIVKREMESVVKLY--VKLRVKVK 2580

Query: 669  EAKRY 673
                +
Sbjct: 2581 VGPSW 2585


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/790 (10%), Positives = 167/790 (21%), Gaps = 165/790 (20%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
              D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 284  ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 339

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
              +   +  D  +  V HN  F+  + +      I    +   T  LAR           
Sbjct: 340  LMEFAPFFEDPFIKKVWHNYSFDIHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 396

Query: 107  SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
             SL+                    +   K   G+  + +       +   +       + 
Sbjct: 397  YSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSEGK-TISIEPVEKLQRED 455

Query: 156  WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195
             +L+  Y   D  +T +L++ L    +  E                + W     L   + 
Sbjct: 456  RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKME 515

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246
              G  +D   + ++++    ER+   +   K       D    +      +R   F    
Sbjct: 516  TEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIE 575

Query: 247  --LITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-------- 294
                 G         +      ++           I          I             
Sbjct: 576  NRNKRGETWPQSKTFKVPNDEGIATEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSG 635

Query: 295  --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
              L                 G       S      Q++                    E 
Sbjct: 636  DVLRSLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREA 695

Query: 353  IADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGE 406
                            +   I+   G + +      I   +      G           +
Sbjct: 696  CHAIAALCEVFSIDKLISGFIVPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPNLQNQ 754

Query: 407  DIYVTTYAKAFN----------TPIDKVSKEQRAIGKVMEL-----ALGYQGGAKVFKTM 451
                    K  +             D    E R +  +        A    G       M
Sbjct: 755  PALEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 814

Query: 452  ASHCGLDLQQFSQN-------------------VKSTSTFEDWEQAESHHLWMQDQYPEF 492
              +  +      +                      +        +  +  +         
Sbjct: 815  NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGL 874

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
            +   K+         K W    + V    K          +    +              
Sbjct: 875  SWDWKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLL-------------- 920

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                         R   + ++             + R            VQ  + D+   
Sbjct: 921  ------------GRSRQFPNM---THAGPGQKGHVERAAINAP------VQGSAADVAMC 959

Query: 613  GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPL 663
             M    +       G+ ++L VHDE++ E P        T+    M+K    +    + L
Sbjct: 960  AMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDL 1019

Query: 664  KAEGYEAKRY 673
              +   AK +
Sbjct: 1020 AVDAKYAKSW 1029


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 86/694 (12%), Positives = 178/694 (25%), Gaps = 130/694 (18%)

Query: 46   DRTEQSAMPSDLLQY---LR-DETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSV 98
               +   +   L Q    L+ D +V        ++ I   K L +         +    +
Sbjct: 1602 PLDDTLTVEERLKQIQSCLQKDSSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKI 1656

Query: 99   LARTNGLP---SSLKNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHV 153
                        +L N   +    +         G+ + +    G    P         V
Sbjct: 1657 ACWLLDSSSKERTLHNMVTSFATEDLPLLEGISAGQGVQSLGIFGEASQPGRYRAAIESV 1716

Query: 154  QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              +++  +          E    L      E         +   G    +      + ++
Sbjct: 1717 LVFRVMTQLNCL-----LEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVM 1771

Query: 214  AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------------------- 254
              +   L+    +L  G   S      +   LFL   +                      
Sbjct: 1772 QAKLSALESQAYQLA-GHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAG 1830

Query: 255  -----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----AVSSDGR 304
                      T K +L           +IL     + +    +  L       +     R
Sbjct: 1831 ARIKLSKQFSTTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDR 1890

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----------------------ERSEEILT 341
            +    Q + A  TGR S      QN+P+                         +  +I  
Sbjct: 1891 IHPISQSHTA--TGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWCKRTKINR 1948

Query: 342  QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
            Q    L   +   D     S  +R   +  +G  ++  D + +E R+LA ++ +   +  
Sbjct: 1949 QLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHV 2008

Query: 402  FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
              +G D++ +  A+        V    R   K +   + Y  GAK          + +++
Sbjct: 2009 LNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGE-----QMGIEE 2063

Query: 462  FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                    +    +   ++       +  +      L+G    L          G+    
Sbjct: 2064 NDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFL---------PGIKDSN 2114

Query: 522  KDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              +        V      SA  +  +  + ++R   +    +P+      S         
Sbjct: 2115 VYIKSHAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPT------SHQHPSIRLG 2168

Query: 581  NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                +Q    R                             GY I L +HDE++ E  +  
Sbjct: 2169 GRHRNQFRPLRG----------------------------GYFI-LQLHDELIYEVAEED 2199

Query: 641  YFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
               V  +    M         + L+ +      +
Sbjct: 2200 VIQVAQIVKREMESVVKLY--VKLRVKVKVGPSW 2231


>gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus
            caballus]
          Length = 2701

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 92/750 (12%), Positives = 192/750 (25%), Gaps = 139/750 (18%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+ + G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1994 DPPIREDGFPVKGCDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPRLTM 2053

Query: 64   ETVMCV----AHN--------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M                  +++      +   + GI +  + +    V        S
Sbjct: 2054 KDRMWHLRSCFQKESDKERSVIVYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2112

Query: 108  S---LKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
                L +     L     L +  E    I                 +  V++  +F    
Sbjct: 2113 KEPTLHSIVTSFLPHELPLLEGIETGQGIQSLGLNVDTEHSGRYRAS--VESILIFNSMN 2170

Query: 164  KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            + +    +E  + +      E         +   G           + ++  +   ++  
Sbjct: 2171 QLNSLLKKENLQDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQ 2228

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM------------------ 256
              +   G   S   +  +   LFL   +                                
Sbjct: 2229 AYQ-LAGHSFSFTSSDDIAEVLFLELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRLGK 2287

Query: 257  SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQF 311
               T K IL+          LIL     + +    +  L  A   +      R+    Q 
Sbjct: 2288 QFSTSKDILNKLKALHPLPGLILEWRRITNAITKVVFPLQRAKRLNPFLGMERIYPVSQS 2347

Query: 312  YGASRTGRWSGCVFQPQNLPRQ-----------ERSEEILTQTIQALNRG---------- 350
            + A  TGR +      QN+PR                + L + +  + RG          
Sbjct: 2348 HTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQALGKGLLPMGRGNEKSHGLNLG 2405

Query: 351  ------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                  E  +D     S  +R   +   G  ++ AD + +E R+LA ++ +   I+    
Sbjct: 2406 HQAQTEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNT 2465

Query: 405  GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            G D++ +  A+      + V  + R   K +   + Y  GAK          + +++   
Sbjct: 2466 GADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGILYGMGAKSLGE-----QMGIKENDA 2520

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                 S    +                      ++G          R    G+       
Sbjct: 2521 ACYIDSFKSKYTGINHFMRETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYH 2571

Query: 525  TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                           +         V  + + +                 G    +  + 
Sbjct: 2572 KAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHSSF--------KSHGHREGMLQSD 2623

Query: 585  SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                      G L +  +Q          M +  + G+ I L +HDE++ E  +     V
Sbjct: 2624 R--------TGLLPKRKLQG---------MFSPIRGGFFI-LQLHDELLYEVAEEDVVQV 2665

Query: 645  GTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              +    M         + LK +      +
Sbjct: 2666 AQIVKNEMESAIK--LSVKLKVKVKIGASW 2693


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 99/364 (27%), Gaps = 112/364 (30%)

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR +      QN+P                                +R   +A  G  +
Sbjct: 5   TGRLASSDPNLQNIP------------------------VRTAEGRRIREAFVAPPGSHI 40

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD + IE R++A ++ +   + AFAN EDI+  T A+ F      V  EQ        
Sbjct: 41  VSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAAVDSEQ-------- 92

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                                                 + +  +  L         A   
Sbjct: 93  ------------------------------------RRYAKVINFGLIYGMSAFGLAQNL 116

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +  +A     + + A++ GV Q   D  E                              
Sbjct: 117 NIERSAAANYIERYFARYPGVRQYMNDTRELAKQQGYVETIF------------------ 158

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                    RRL   ++           +   R            +Q  + D++   M  
Sbjct: 159 --------GRRLWVPEINSANV---QRRNGAERAAINAP------MQGTAADLIKLAMIA 201

Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYE 669
                   K    +++ VHDE+V E PD     +   L  LM    +    +PL AE   
Sbjct: 202 VDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLPRLMQSVAT--LDVPLLAEVGS 259

Query: 670 AKRY 673
              +
Sbjct: 260 GNNW 263


>gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/495 (14%), Positives = 139/495 (28%), Gaps = 139/495 (28%)

Query: 173 LFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           + + L+P  +  E  +  +   +  RG     + + + +    +  + L+     +T+  
Sbjct: 64  IDRDLLPSLENIEAPVQSILAAMECRGVAFYPNHLKRNEAQANERIEALEAQARTITNDS 123

Query: 232 IRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNI-----TQLAKDLIL 279
                    +  YL+ I  + +             T +  L               D+IL
Sbjct: 124 SFLLSSPQQISNYLYDILKMKVPSGLVQKTKSQRSTSEETLQALKAASNGSPHPIIDVIL 183

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                +      +  L        R+        A RTGR S      Q +P+ +     
Sbjct: 184 EFRTLNKLLTTYIKPLPTFCLPQ-RIHPQWSEC-AVRTGRLSCRQPNLQQVPKDD----- 236

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDW 397
                                   VR   +        L   D +  E R+LA ++G+  
Sbjct: 237 ---------------------GASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKA 275

Query: 398 KIKAFANGEDIYVTTYA--KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
            I  F    ++ +         N P++ ++ ++RA  K + LAL Y              
Sbjct: 276 LISLFQMDANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPN--------- 326

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                              + A K  +  +    +   +  + Q
Sbjct: 327 -----------------------------------QVAKKLNITKSQAIQMMNDFFRRFQ 351

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV    +D  E                              + ++V  + RR     +  
Sbjct: 352 GVKNWMEDTKEFARR--------------------------NHYVVTIAGRRRYLDGIDS 385

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--------------- 620
           D    N A +Q  R+          ++Q  + D++   M N  +N               
Sbjct: 386 DD---NGAKAQAERQAI------NTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSS 436

Query: 621 GYDIVLTVHDEIVSE 635
              I+L +HDE+V E
Sbjct: 437 RPRILLQIHDELVLE 451


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 108/392 (27%), Gaps = 115/392 (29%)

Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           + TL +A++  DGR+  T     A  TGR S      QN+P                   
Sbjct: 8   VQTLMDAINPRDGRIHTTFTQTVA-ATGRLSSVDPNLQNIP------------------- 47

Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                        +RS  +   G   L+ AD + +E R++A ++G++  IKAF +G D +
Sbjct: 48  -----NRNATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFH 102

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
               +  +  P+D+V+ +QR   K M   L Y        T      L            
Sbjct: 103 RYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG-----LSTYGLSQQL------------ 145

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
                                       +       ++  +      V    + L     
Sbjct: 146 ---------------------------GIPSKEAAALRSRYFQTFGKVHDYLESLVSNAR 178

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               RR  +  +         A  +   
Sbjct: 179 NTGYTQTMF--------------------------GRRRYFPALTSANRVARDAAERG-- 210

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    +          IVL +HDE+V E        
Sbjct: 211 -------ALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKR 263

Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
           V  L    M    + A  +PL         ++
Sbjct: 264 VTELVRDAMEHAVNIA--VPLDVSTGVGSDWQ 293


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/790 (10%), Positives = 168/790 (21%), Gaps = 165/790 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 227 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 282

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D  +  V HN  F+  + +      I    +   T  LAR           
Sbjct: 283 LMEFAPFFEDPFIKKVWHNYSFDIHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 339

Query: 107 SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            SL+                    +   K   G+  + +       +   +       + 
Sbjct: 340 YSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSEGK-TISIEPVEKLQRED 398

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195
            +L+  Y   D  +T +L++ L    +  E                + W     L   + 
Sbjct: 399 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKME 458

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246
             G  +D   + ++++    ER+   +   K       D    +      +R   F    
Sbjct: 459 TEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIE 518

Query: 247 --LITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-------- 294
                G         +      ++           I          I             
Sbjct: 519 NRNKRGETWPQSKTFKVPNDEGIATEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSG 578

Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L                 G       S      Q++                    E 
Sbjct: 579 DVLRSLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREA 638

Query: 353 IADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGE 406
                           +   I+   G + +      I   +      G           +
Sbjct: 639 CHAIAALCEVFSIDKLISGFIVPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPNLQNQ 697

Query: 407 DIYVTTYAKAFN----------TPIDKVSKEQRAIGKVMEL-----ALGYQGGAKVFKTM 451
            +      K  +             D    E R +  +        A    G       M
Sbjct: 698 PVLEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 757

Query: 452 ASHCGLDLQQFSQN-------------------VKSTSTFEDWEQAESHHLWMQDQYPEF 492
             +  +      +                      +        +  +  +         
Sbjct: 758 NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGL 817

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           +   K+         K W    + V    K          +    +              
Sbjct: 818 SWDWKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLL-------------- 863

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                        R   + ++             + R            VQ  + D+   
Sbjct: 864 ------------GRSRQFPNM---THAGPGQKGHVERAAINAP------VQGSAADVAMC 902

Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPL 663
            M    +       G+ ++L VHDE++ E P        T+    M+K    +    + L
Sbjct: 903 AMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDL 962

Query: 664 KAEGYEAKRY 673
             +   AK +
Sbjct: 963 AVDAKYAKSW 972


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/679 (14%), Positives = 181/679 (26%), Gaps = 176/679 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET         G+  Y++     L  +   D    +           D+   +  
Sbjct: 38  LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAI-- 86

Query: 64  ETVMC--VAHNSLFERILFKKTLGIDIPSK--RWICTSVLARTNGL--------PSSLKN 111
              +   V  N+ F+  +  +  GI++     R + T +LA+              SL+ 
Sbjct: 87  -GALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEE 145

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ-LFGEYCKRDVEAT 170
                         ++ + +     K + +         + +  +   +  Y   D   T
Sbjct: 146 LIAKF------ISEDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPEYLLYAGMDTIFT 199

Query: 171 RELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             + K L PL           E  +  +   I+ +G+ +D++    L E    +++  + 
Sbjct: 200 ARVCKSLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVWEA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-NITQLAKDL 277
                      +   T  L   L    G+ +   +E        ++L            +
Sbjct: 260 IAFTEYGVEKVN--STEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAI 316

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                         +    +   S+ R    +    A RT R S      Q LP  +   
Sbjct: 317 AQEAKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPSSDW-- 373

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                     VR C IA  G  +   D    E RVLA ++G+  
Sbjct: 374 -------------------------IVRRCFIAEPGDVMASVDYQAQELRVLAALSGD-- 406

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
                                                              + M      
Sbjct: 407 ---------------------------------------------------RNMIEAFEN 415

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                     +        +  +            A    +     + V +A+ A + GV
Sbjct: 416 GADLHQMTADAAQVPRKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGV 475

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            +L K L        + G                       +IV    RRL    V    
Sbjct: 476 ERLSKKL---AMEAGRNG-----------------------YIVNAMGRRLP---VDSSR 506

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635
           +Y                     ++Q+ SRD+ C  +    + GY   + L +HDEIV+ 
Sbjct: 507 TY----------------SALNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEIVAS 550

Query: 636 TPDTPYF-SVGTLCSLMTK 653
            P +    +   +  LM +
Sbjct: 551 LPASEAERAAAHIGHLMQE 569


>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
 gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
          Length = 1974

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/540 (11%), Positives = 140/540 (25%), Gaps = 105/540 (19%)

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------LTDGIIRSS 235
            D E  L      +   G   D  ++ +      +  ++++ +                S 
Sbjct: 1482 DAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPGAEPAFSL 1541

Query: 236  RQTYALRMYLFLITGIDLV----------DMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              +  +   LF    +                      +L+          L+L     S
Sbjct: 1542 ASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALVLEHRTLS 1601

Query: 286  GSAILKLNTLSEA-------------VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
               +   + + E                   RLRG +     + TGR +      Q +P+
Sbjct: 1602 RC-VAMADEMVELALGGARRDEGNSSRGKITRLRGAIHQTN-TETGRLAMEEPNLQTVPK 1659

Query: 333  QERSEEILTQTIQ-------------ALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
                        +                      +     +  VR+  +A  G  L+ A
Sbjct: 1660 PRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPGAVLLSA 1719

Query: 380  DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
            D   +E RV+A ++G++  ++AF +               P      +            
Sbjct: 1720 DYRQLELRVMAHMSGDEGLVRAFNHE------------GAPPHHPDADPFR--------- 1758

Query: 440  GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
                                 +  +  K +       +  ++ +        FA +  + 
Sbjct: 1759 ---------------FLASRWRGVEVGKVSDADRAVAKQLAYGVLYGSGPARFAQEMGVT 1803

Query: 500  GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             +   +  +A++A   GV +  K L E  +         +      +   +         
Sbjct: 1804 ESEARVQIEAFKASVPGVERWRKKLIETASRA-SPPSVETICGRRRILSSLAPDAALTAT 1862

Query: 560  IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---- 615
                + RR        +                   +      Q  + D++   M     
Sbjct: 1863 GCEDAKRRFRLDRSADER------------------RAVNTACQGSAADVVKRAMIAVFD 1904

Query: 616  NATKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN-PSWAKGLPLKAEGYEAKRY 673
                +    VL +HDE++ E   +    +   + ++M +    +   +PL  +      +
Sbjct: 1905 ELDPSLATPVLQIHDELLFEVDASRVVEAARAVRAIMERAGDEFGFTVPLPVKVSAGANW 1964


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 113/288 (39%), Gaps = 61/288 (21%)

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
           +K F    DIY  + +  F+ P++K   +   R  GK+ ELALGY G       +     
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIG---- 56

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                               A+   L     + +  +WRA +  
Sbjct: 57  ------------------------------------ALDTGLSEDELQPLVDSWRASNPN 80

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           ++Q W D+       +++  +     +              + IVLPS RRL Y   K  
Sbjct: 81  IVQFWWDVDRCVKTAIKQRTATETHGIR------FVYQNGILFIVLPSGRRLCYVKPKIG 134

Query: 577 CSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            +     +          +  R  +YG K  ENIVQAISRDILC  M+    +   IV  
Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTL--SHCFIVGH 192

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDE++ ETP     +   +C  + + P W  GL L+A+GYE   Y+K
Sbjct: 193 VHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238


>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
          Length = 2671

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/738 (10%), Positives = 165/738 (22%), Gaps = 144/738 (19%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---------TVMCVAHNS--- 73
            +  ++   A  W  +        ++    +D+   L              +    ++   
Sbjct: 1980 DDVLLVGLAVCWGGKDAYYISL-QKEQDQADICPSLAPPPLDQTLSVKDRLWHIQSALQQ 2038

Query: 74   -----------LFE----RILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA 115
                       +++             + +    +    V            +L N    
Sbjct: 2039 IRPGGSEPTIIMYDCIEQYKALLLACRVSLAGH-FQDPKVACWLLDPGSKERTLHNMVTN 2097

Query: 116  LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                E       G      +     S D           V  +               E 
Sbjct: 2098 FLPYELPLLDGVGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGAL-----LEK 2152

Query: 174  FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
             K        E         +   G     +     + ++  +  +++    +L  G   
Sbjct: 2153 EKLQDAFHRVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLA-GRSF 2211

Query: 234  SSRQTYALRMYLFLITGIDL---VD------------------------MSEGTLKSILS 266
            S      L   LFL   +                                   T K +L 
Sbjct: 2212 SLTSHDDLAQVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLE 2271

Query: 267  HSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSD-GRLRGTLQFYGASRTGRWSGC 323
                      LIL     + +    +  L   + ++ + G  R        + TGR S  
Sbjct: 2272 KLKALHPLPGLILEWKRITNALTKVVFPLQREKLLNPNLGMERIYPISQTHTATGRVSFT 2331

Query: 324  VFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLGLASD----- 362
                QN+P+                            +          P           
Sbjct: 2332 EPNIQNVPKDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAER 2391

Query: 363  ------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   +   G  ++ A  + +E R+LA ++ +   I+   +G D++ +  A+ 
Sbjct: 2392 GVSFFVSMRHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEW 2451

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                 + V+   R   K +   + Y  GAK          + +++        +    + 
Sbjct: 2452 KMIDPEAVTDTVRQQAKQICYGIIYGMGAKSLGE-----QMGIEESDAACYIDTFKSRYT 2506

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              +                  ++G          R     +                   
Sbjct: 2507 GIQKFLKETVRSCTRDGFVQTILGR---------RRYLPAIKDSNPYAKSHAERQAVNTT 2557

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
               +         V    ++ +    PS  +     V+         T +  R R     
Sbjct: 2558 VQGSAADIVKTATV--NIQKRLEETFPSVPKSHEHPVQA------GGTGRAERLRHRPPP 2609

Query: 597  LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
                                    G   +L +HDE++ E        V   +   M    
Sbjct: 2610 T----------------------RGAFFILQLHDELLYEAAQEDAIQVAQIIKKEMENAM 2647

Query: 656  SWAKGLPLKAEGYEAKRY 673
                 + L+ +      +
Sbjct: 2648 K--LSVKLRVKVKMGPSW 2663


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 183/699 (26%), Gaps = 175/699 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET          +  Y     I L  +  +     +             +  
Sbjct: 35  LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                          EE KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY---IDPATAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   +D R+   +    A RT R S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTARMSTTSPSAQNLPANDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                                               +TM     
Sbjct: 407 ----------------------------------------------------RTMIRAFE 414

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
            +         +        +  +          + A    +     + V   + A + G
Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K L    A +                            ++ P+ RRL     +  
Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VITPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                            G      +VQ+ SRD+    +    + G   +  L +HDE+++
Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLA 549

Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
             P+     +   +  +M +      G+ +  +     R
Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585


>gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
 gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
          Length = 1548

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 94/706 (13%), Positives = 170/706 (24%), Gaps = 174/706 (24%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMC----VAHN----SLFERI 78
             I   A  W+  PV   +  +        +  + + D  +       +HN          
Sbjct: 933  EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 992

Query: 79   LFKKTLGIDIPSKRW---ICTSVLARTNGLPSS-LKNA--CLALNFSEHLTK-------- 124
               K +G  + S       CT        LP            L      T         
Sbjct: 993  KISKIMGNVLKSPAISIQRCT-----RLNLPEGIRDELVDGSWLMMPPLHTSHTIDMSIV 1047

Query: 125  ------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY-----CKRDVEATREL 173
                   EE  +      +      P     AN    W+          C R V  TR L
Sbjct: 1048 IWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRAL 1107

Query: 174  FKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               L  +   E            L  +   +   G  ID++  L+ + ++  + + L++ 
Sbjct: 1108 CSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKK 1167

Query: 224  IVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDL 277
              +L             +   LF    + +        +   T K  L     ++     
Sbjct: 1168 AFELAGMTFSLHN-PADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRYSEWLIAF 1226

Query: 278  ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
                                 +  D RL   L                          + 
Sbjct: 1227 P-------------YIAFCFFIIKDNRLFELLS-------------------------AS 1248

Query: 338  EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396
                   +    G  ++          R   +       L+ AD + IE R++A  + + 
Sbjct: 1249 VEHEVEFKLDKNGRDVSSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDS 1308

Query: 397  WKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              I   +  E D++    AK      D VS   R   K +   + Y  G           
Sbjct: 1309 SLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMG----------- 1357

Query: 456  GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                                                 A + +      +   +++++   
Sbjct: 1358 ---------------------------------ANRLAEQLECTSDEAKEKIRSFKSSFP 1384

Query: 516  GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
             V     +              +          L +  +   ++I     RR   S +K 
Sbjct: 1385 AVTSWLNETISFCQEKGWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIKF 1444

Query: 576  DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----------------- 618
              +   +   +  R+         ++ Q  + DI+   M N                   
Sbjct: 1445 GNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSE 1495

Query: 619  ------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657
                  K    I+L VHDE+V E   +       L    M    S 
Sbjct: 1496 TRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVSL 1541


>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
 gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
          Length = 2181

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/668 (13%), Positives = 181/668 (27%), Gaps = 117/668 (17%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQ------------SAMPSDLLQYLRDETVMCVAHNS 73
            + + +   A+  +D  V   +   +                  L   L  + +  ++H++
Sbjct: 1603 DSSYLAGIAFCLNDNVVYYMNMQPEEEQQQQQQQVGSELKVQQLSSLLSRQDLTLLSHDA 1662

Query: 74   LFERILFKKTLG--IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGK 129
              +  + ++ +    DI         V           S  N C              G 
Sbjct: 1663 KEQLKVLRQAVPQLNDIQVL-LEDPKVANWLLQPDKTLSFHNMCQQFAPECGALANLCGS 1721

Query: 130  ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLW 188
                    G   S          ++A         +     R    +L+    + E  + 
Sbjct: 1722 GR-GYSSFGLDASSAIMAKVRASIEACVTVHILNGQLENLERIGTGQLLKFFRELEMPIQ 1780

Query: 189  LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
            +    +   G+      + +L + +    K+L+  I +L  G   +   T A+   L   
Sbjct: 1781 MSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELH-GSRFNLGSTQAVAKVL--- 1836

Query: 249  TGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
             G+         T + IL   +       LILN    S      +  L +      R+ G
Sbjct: 1837 -GLHRKANGRVSTSRQILEKIDSP--ISQLILNYRKLSMLLAKSMQPLLK-CCQANRVHG 1892

Query: 308  TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
                Y A  TGR S      QN+ +                    I           RS 
Sbjct: 1893 QSITYTA--TGRISMSEPNLQNVAKD-----------------FHIELGKEQLKISCRSA 1933

Query: 368  IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
                   + L+ AD   +E R+LA ++ +   ++   + +D++    A         VS+
Sbjct: 1934 FAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWNKIDESNVSE 1993

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            + R   K +   + Y  G +          L   +    + +      +   +++ + + 
Sbjct: 1994 QLRNGTKQICYGIVYGMGMRSLSE-----ALKCTEQEAQMITEQFHLAYPGIKAYTMKVV 2048

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                     + + G    L           +      L               +      
Sbjct: 2049 KFARNNGYVETITGRRRYLD---------HINSGEVQLKTQAERQAINSTIQGSAADI-- 2097

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                       + +     R                          Y  KL       ++
Sbjct: 2098 ------AKSAILRMEKNLGR--------------------------YREKL------GLA 2119

Query: 607  RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                        KN  ++VL +HDE++ E P      V  + SL M         +PL+ 
Sbjct: 2120 ------------KNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENCVK--LNVPLRV 2165

Query: 666  EGYEAKRY 673
            +    + +
Sbjct: 2166 KLKIGRSW 2173


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/673 (12%), Positives = 179/673 (26%), Gaps = 126/673 (18%)

Query: 26   EQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQYLR--DETVMCVAHNSLFERIL 79
            +   +   +  W    V   D     T   ++  D+       DE V+ +A     ++  
Sbjct: 1127 KDPKLVGLSLCWSPTVVYYLDIQILKTRHPSVIEDIQNIFESFDEDVIQIAFCIK-DQ-- 1183

Query: 80   FKKTLGIDIPSK----RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALI 132
            FK  L   +        W    + +           L +                     
Sbjct: 1184 FKWMLNSGVHGVTTSNNWQDPMIASWLMDPDNIKQGLFSLVEHYCSEHL----------- 1232

Query: 133  ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------ERD 186
                + +      +      V + ++             +L ++L  ++        E  
Sbjct: 1233 -YLFQDTKYDWDVNRPSYTSVSSEKVCCVESIASYILMLQLEEQLSGMNMWQHFTGVEMP 1291

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
                   +   G  +D  L+ + +  +      L E   K+      +      +   LF
Sbjct: 1292 HMYCVALLELNGIEVDNSLLKRYRLELHSASLALQEKAWKILGRKF-NLSNPKEVSKVLF 1350

Query: 247  LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRL 305
                     +                    ++  R  +      K+  L  ++    GRL
Sbjct: 1351 QEL-----RLXXXXXXXXXXXXXXXXXYPCIMSWRTVNYALN--KVILLINSLPPSCGRL 1403

Query: 306  RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
                     + TGR        Q++P+            Q      + ++     S C+R
Sbjct: 1404 HHKC--LTLTNTGRMIMSEPNIQSIPK------------QFSITKGSKSEADSEQSFCLR 1449

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP---ID 422
            +  +A NGK L+ AD + IE R+LA ++G++  I AF +       + A  F +    ID
Sbjct: 1450 NIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSEISSID 1509

Query: 423  KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
             V+ +QR   K     + Y  GA+          ++  +        S    +   + + 
Sbjct: 1510 DVTDKQRDTTKQTCYGILYGMGAQTL-----AQQMNTSETDAQNAMDSFMNSYPMVKVYF 1564

Query: 483  LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              +  Q  E    + + G          R     +  +   +               +  
Sbjct: 1565 NRLVAQCKEKGYIETISGR---------RRYLPEIKSVRLKMRSHAERQAVNSTIQGSAA 1615

Query: 543  VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-SQLMRERTYGGKLTENI 601
                                    ++    +    + L   T  Q  R  T         
Sbjct: 1616 DIV---------------------KMATYKIHCAVASLGWNTLHQNTRSNT--------- 1645

Query: 602  VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKG 660
                                + +V  +HDE++ E  +     +V  +   M         
Sbjct: 1646 ------------------TDFFLVHHIHDELIYEVDEKKLHEAVSVIERCMVDAFP--MS 1685

Query: 661  LPLKAEGYEAKRY 673
            + L       K +
Sbjct: 1686 VKLAVRIKVGKLW 1698


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
               EL LGY+GG   F T A + GLDL + ++ +  T     W      + W + Q  +
Sbjct: 18  AHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAK 77

Query: 492 FA------------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--- 536
                         + DK +   C+ +K+ WR  H   +  W+DL +G    V+  G   
Sbjct: 78  RPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREF 137

Query: 537 ------------SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV----------- 573
                       +I   R         +     + + LPS R L Y  +           
Sbjct: 138 WAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDED 197

Query: 574 -------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                  +      N  T Q     T+GGK  ENIVQA+ RD+L   M N    GY IVL
Sbjct: 198 GRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVL 257

Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +VHDE+V ETPDT  ++V  L  LM   P WA G PL AEG E KRY K
Sbjct: 258 SVHDELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306


>gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix
            jacchus]
          Length = 2550

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/736 (11%), Positives = 185/736 (25%), Gaps = 145/736 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----RDETVMC---VAHNSL-------- 74
            +   A  W       +   ++    S++   L     D ++     + H           
Sbjct: 1860 VVGLAVCWGGRDAYYFSL-QKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLQKESD 1917

Query: 75   -------FE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS 119
                   ++      +   + GI +  + +    V        S   +L +     L   
Sbjct: 1918 EERSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHE 1976

Query: 120  -EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
               L  ME  + + +       +           +  +    +      +   +   R  
Sbjct: 1977 LPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR-- 2034

Query: 179  PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                 E         +   G           + ++  +   ++    +L  G   S   +
Sbjct: 2035 ---KVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLA-GHSFSFTSS 2090

Query: 239  YALRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNIT 271
              +   LFL   +                                   T K +L+     
Sbjct: 2091 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2150

Query: 272  QLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQ 326
                 LIL     + +    +  L      +      R+    Q + A  TGR +     
Sbjct: 2151 HPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPN 2208

Query: 327  PQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------------ 358
             QN+PR                    + +L      + +G ++                 
Sbjct: 2209 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAERGM 2268

Query: 359  LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ +   I+   +G D++ +  A+   
Sbjct: 2269 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEWKM 2328

Query: 419  TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
               + V  + R   K +   + Y  GAK          + +++        S    +   
Sbjct: 2329 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2383

Query: 479  ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                               ++G          R    G+ +                   
Sbjct: 2384 NQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKENNPYHKAHAERQAINTTVQ 2434

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
             +         V  + + +                 G    +  +           G L 
Sbjct: 2435 GSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDQ--------TGLLP 2478

Query: 599  ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657
            +  +Q          M    + G+ I L +HDE++ E  +     V  +    M      
Sbjct: 2479 KRKLQG---------MFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAVK- 2527

Query: 658  AKGLPLKAEGYEAKRY 673
               + LK +      +
Sbjct: 2528 -LSVKLKVKVKIGASW 2542


>gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens]
          Length = 1762

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1054 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1113

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1114 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1172

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 1173 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1232

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 1233 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1287

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 1288 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1346

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 1347 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1406

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 1407 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1464

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 1465 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 1524

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 1525 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 1579

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 1580 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 1630

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 1631 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 1682

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 1683 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 1723

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 1724 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 1754


>gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
 gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
          Length = 2270

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1562 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1621

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1622 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1680

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 1681 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1740

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 1741 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1795

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 1796 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1854

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 1855 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1914

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 1915 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1972

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 1973 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2032

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 2033 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2087

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 2088 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2138

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 2139 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2190

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 2191 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2231

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 2232 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2262


>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
          Length = 2725

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 2017 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 2076

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 2077 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2135

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 2136 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2195

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 2196 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2250

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 2251 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2309

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 2310 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2369

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 2370 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2427

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 2428 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2487

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 2488 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2542

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 2543 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2593

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 2594 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2645

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 2646 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2686

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 2687 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2717


>gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens]
          Length = 2214

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1506 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1565

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1566 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1624

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 1625 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1684

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 1685 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1739

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 1740 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1798

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 1799 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1858

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 1859 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1916

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 1917 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 1976

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 1977 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2031

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 2032 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2082

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 2083 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2134

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 2135 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2175

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 2176 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2206


>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
          Length = 2590

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1882 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1941

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1942 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2000

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 2001 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2060

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 2061 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2115

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 2116 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2174

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 2175 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2234

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 2235 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2292

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 2293 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2352

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 2353 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2407

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 2408 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2458

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 2459 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2510

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 2511 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2551

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 2552 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2582


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 11/234 (4%)

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            F T A    LDL + +         +   +A+S +     +   + + +++   AC+ +
Sbjct: 3   AFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVFI-ACDSL 61

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           K+ WR  H      W +L       +        ++      L +RR    + I LPS R
Sbjct: 62  KRLWRRAHPATCDFWYELERTVRTAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGR 116

Query: 567 RLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
            + Y      KG+ +Y+  N+ + +  R +TYGGKL EN+ QA +RD+L   M      G
Sbjct: 117 AVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAG 176

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           Y IVLTVHDEI+SE PD+P +S   +  L+   P WA  +PL A G+E+ RYRK
Sbjct: 177 YSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 3/176 (1%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           LF D+ET S  P+   G   YAE A I L AY+++  PVK+WD T+   MP+DL  YL D
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             ++ V HN  +F+ ++  K L ID+P  R   T V A  +GLP +L + C   N +   
Sbjct: 64  PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123

Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            K +EGKALI  FCK    +S     T   H + W  F  Y   D+ A RE+++ L
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHL 179


>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
 gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
          Length = 2193

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 89/671 (13%), Positives = 185/671 (27%), Gaps = 120/671 (17%)

Query: 18   KVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL-----QYLRDETVMCVA 70
            K  ++   + + I   ++   D  V        E   +P+ L      + +    +  + 
Sbjct: 1620 KQALFQVDDSSFIAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLV 1679

Query: 71   HNSLFERILFKK----TLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTK 124
            H++  +             I I         V           S KN C           
Sbjct: 1680 HDAKEQVKALLHGVPQLQNIGIK---VEDPKVGHWLLEPDKTVSFKNMCQQFAPECTALA 1736

Query: 125  MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
               G         G   S          ++A         +     R          + E
Sbjct: 1737 NLCGSGR-GYSSHGLDSSSAILPKLRASIEACVTVHILKGQIENLER---------IEVE 1786

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
              + ++   +   G+      + +L + +     K++  I K+      +   T A+   
Sbjct: 1787 MPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSKF-NLGSTQAVANV 1845

Query: 245  LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
            L L            T + +L          +LILN    +   +  +  L        R
Sbjct: 1846 LGLHRK---PHGRVSTSRQVLEKLGSP--ISELILNHRKLNMQIVKGMQPLIR-CCKANR 1899

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            + G    + A  TGR S      QN+      +  +     ++                 
Sbjct: 1900 IHGHSITHTA--TGRISMSEPNLQNV----AKDFDIRMGPDSVRISC------------- 1940

Query: 365  RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS   +    + L+ AD   +E R+LA ++ +   +    + +D++    A   + P  +
Sbjct: 1941 RSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAE 2000

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            V+++ R+  K +   + Y  G +          L   +    +      + +    ++  
Sbjct: 2001 VTEQMRSGTKQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTE 2055

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +     +    + + G    L       ++         + +     V      SA  +
Sbjct: 2056 KVLKFARKLGYVETITGRRRYLDHINSGEQN--------LIKQAERQAVNTTIQGSAADI 2107

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
            A    L M ++       L                                  + EN +Q
Sbjct: 2108 AKRAILDMDKNIGRYWKKLG---------------------------------VEENSIQ 2134

Query: 604  AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662
                                +VL +HDE+V E P+     +     L M         +P
Sbjct: 2135 --------------------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVP 2174

Query: 663  LKAEGYEAKRY 673
            LK +    + +
Sbjct: 2175 LKVKIKMGESW 2185


>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
          Length = 1864

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/661 (13%), Positives = 180/661 (27%), Gaps = 116/661 (17%)

Query: 27   QAVITLCAYAWDDEPVKLWDRTEQSAMP-------SDLLQYLRD----------ETVMCV 69
               +   A AW+         + +  +            + L +          + +   
Sbjct: 1281 DKKLYGAAIAWESNIAYYISFSNEQDLKISGKEQMKLFKELLANTILYVKCFATKEIFKT 1340

Query: 70   AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKME 126
                        +  GI I S +++   V            +  +              +
Sbjct: 1341 ----------LYECCGI-IASCKFLDPKVANWLYDGNIYEKTFNDMVKEYFPQGCFIIKK 1389

Query: 127  EGKALIARFCKGSIDSPPYD-CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
             G             + P +    A  V +W +     K   +  +     L    D E 
Sbjct: 1390 MGTCYDTGPGLCIKSAIPGELRACAEAVLSWHMA---DKLIDKLEQLSPTLLYTFKDIEM 1446

Query: 186  DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
             + +L   +   G  + L  +  L  +I +E   L+E    L      +   +  +   L
Sbjct: 1447 KIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKKF-NFSSSKEVGEIL 1505

Query: 246  FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
             L  G  +        K++L  S+      +L+++    + +    +  L        R+
Sbjct: 1506 GLYKGKKI-----SVNKAVLGQSDHP--ISNLVMSWRKLNVTKSKIIYPLLNLAQHSSRI 1558

Query: 306  RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             G      ++ TGR S      QN+PR                            +  VR
Sbjct: 1559 HG--NCVTSTLTGRISMHEPNLQNVPRD-------------------FNSKDNSFTISVR 1597

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               I + G  ++ AD   +E R+LA  + +           DI+    AK  +   ++V 
Sbjct: 1598 MAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSENEVD 1657

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
             + R   K +   + Y  G K          L + +        S    +         +
Sbjct: 1658 DKMRRHTKQLCYGMIYGMGVKTLAE-----NLSVDEVKAKEFLESFMNAYPGISKWLNNV 1712

Query: 486  QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVA 544
             ++         ++           R    G+  +            V      SA  + 
Sbjct: 1713 LEEARINGYITTILER---------RRMFPGLTSINPMEKSQAERQAVNTKVQGSAADIV 1763

Query: 545  NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                + + +  R                       +   +S+ +R  +   +        
Sbjct: 1764 KKAMIDIEKRMRFEFST--------------SLPIMPANSSRKLRSNSKETQ-------- 1801

Query: 605  ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPL 663
                          K GY +VL +HDE++ E        V T+    M +       LP+
Sbjct: 1802 -------------HKGGY-LVLQLHDELLYEVNIYDLRQVATIVKESMEQVCQLTVPLPV 1847

Query: 664  K 664
            K
Sbjct: 1848 K 1848


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 58/271 (21%)

Query: 416 AFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            FN P++ ++K    R  GKV ELALGYQGGA   K M                      
Sbjct: 1   MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------------------- 39

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A++  +     + +  +WR  +  ++  WK   E       
Sbjct: 40  -------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAIN--- 77

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------AT 584
              ++ +R+  +   L     K  + I LPS R L Y       +   +           
Sbjct: 78  ---TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  + +TYGGKL ENIVQA +RD+L   +     +G+ IV  VHDE++ E P      +
Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNG-L 193

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
             + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224


>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
 gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta
 gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
          Length = 2590

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 186/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1882 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1941

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1942 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2000

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 2001 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2060

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 2061 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2115

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 2116 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2174

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 2175 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2234

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 2235 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2292

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 2293 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2352

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 2353 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2407

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 2408 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2458

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 2459 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2510

Query: 583  AT-SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +  + L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 2511 SDQTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2551

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 2552 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2582


>gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 169

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET S   L + GV+ YA+     + L  Y+ D  PVK+ D T+   +P  ++
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L +  ++  A N+ FER+   + +G  +    W C+ V + T GLP SL++    L  
Sbjct: 61  EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCK 164
                    GK L+  F   CK +  +         +    WQ F +Y +
Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQ 168


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 86/721 (11%), Positives = 192/721 (26%), Gaps = 185/721 (25%)

Query: 34   AYAWDDEPVKLWDRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPS 90
            +Y  +   + L D            +++ L +  +  +++N   +    F K     +  
Sbjct: 537  SYIIEKYFITLIDNVGGLVEEKLKFMVEILENGLIKKISYNCS-DGYKPFIKQYPY-MKP 594

Query: 91   KRWICTSVLARTNG-----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                   + A            S +             K E  K +     +  + +   
Sbjct: 595  INSFDIKIAAWLLNSDGGNNGYSFEKVQEY-------GKDESIKTIQNISNRNIMQNQSE 647

Query: 146  DCTRANHVQ----AWQLFGEYCKRDVEATRELFKRLIPLSD---------GERDLWLLDQ 192
               +  + +              +D+  + +++  L  L            E  +  L  
Sbjct: 648  KIKKLINEENEFSKENTNYGSFSQDIVYSLKIYLVLKNLLYDKDLSYNFIEEMSVVSLIS 707

Query: 193  TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
             +   G  ++  ++ + ++L+ ++   L        D  + + R    +   ++    + 
Sbjct: 708  KMELYGILLETKILNQYKKLLDEKSANL---CEYFRDNNLLNPRSIPQVTKVIYQDLKLK 764

Query: 253  LV-----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLR 306
            L       + + +L  I + +   +   + +L            ++   E   S   +  
Sbjct: 765  LPHPPPTKVDKKSLNEIKALNPNQEEFINNLLIYRNLEKINKTYISAYLELADSYYDKFH 824

Query: 307  GTLQ-------------FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
                               G + TGR S C    QN+ R         +  QA ++ + +
Sbjct: 825  QNQNESNKKAFIKCDWLQCG-TSTGRLSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDL 883

Query: 354  --------------------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                       +  +R   I+ +G  ++  D   IE RV++  +
Sbjct: 884  FLMTHIEDDQNQNQNHNQNQNQNQNQETINIRDAFISRDGYTMLAYDYNQIELRVMSHFS 943

Query: 394  GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
             +   I  F N +D+     +K  N  I+ V+ ++R   K +   + Y  G +       
Sbjct: 944  NDKHLINYFNNNQDVIRRMASKLLNKEINDVTTDEREKTKRVVYGIMYGIGPQSL----- 998

Query: 454  HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                                       K+  +A EL+   +  +
Sbjct: 999  ---------------------------------------GKLLKISTSAAELLINNFYKE 1019

Query: 514  HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
               +                                       D  +   S R     ++
Sbjct: 1020 FPQISSFITTTKNSLKQ-------------------------NDPEVRTISGRIRKLGEI 1054

Query: 574  KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI--------- 624
            K                     +    I+Q  S DI+ + M        DI         
Sbjct: 1055 KNSFD-----------ISIAKRRSVNTIIQGSSADIIKKSMVKINNFFGDICSIFNNNNN 1103

Query: 625  ---------------VLTVHDEIVSETP----DTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
                           +L +HDE++ E P    +     +  +  LM      +K   LK 
Sbjct: 1104 NNNSNNNNNQISPRFLLQIHDELIFEVPTFLIEEHRVDL-YIKYLMESV---SKDFNLKV 1159

Query: 666  E 666
            +
Sbjct: 1160 D 1160


>gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c]
 gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 252

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/258 (35%), Positives = 128/258 (49%), Gaps = 13/258 (5%)

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           ++KEQR IGKV ELALGY GG   F   A+   +DL+  +    +       ++A     
Sbjct: 1   MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLE 58

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
           W +  +            AC++ K+AWR  H  +   W+ L       +    +      
Sbjct: 59  WTKANHRPTFDLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT--- 115

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKL 597
                + ++  +  + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL
Sbjct: 116 --CCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA+SRD+L   M      GY IVLTVHDEI++E  D P F+   L +LM   P W
Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A+GLPL AEG++  RYRK
Sbjct: 234 AEGLPLAAEGFDTYRYRK 251


>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
 gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus]
 gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus]
          Length = 2593

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/734 (11%), Positives = 187/734 (25%), Gaps = 141/734 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W  +    +   ++          +P  L   L  +  +    +         
Sbjct: 1903 LVGLAVCWGGKDAYYFSLQKEQKHSEISASLIPPSLDPSLTVKDRLRHLQSCFHKESDKE 1962

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN-ACLALNFSEH 121
                +++      +   + GI +  + +    V        S    L +     L     
Sbjct: 1963 RSVIIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSKEPTLHSIVSHFLPHELP 2021

Query: 122  LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
            L +  E    I         +       +  V++  +F    + +    +E  + +    
Sbjct: 2022 LLEEIETGQGIQSLGLNVSTTHSGRYRAS--VESILIFNSMNQLNSLLKKENLQDVF--Y 2077

Query: 182  DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
              E         +   G           + ++  +   ++    +L  G   S   +  +
Sbjct: 2078 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLA-GHSFSFTSSDDI 2136

Query: 242  RMYLFLITGIDLVDMSE---------------------------GTLKSILSHSNITQLA 274
               LFL   +      +                            T K +L+        
Sbjct: 2137 AEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRALHPL 2196

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQN 329
              LIL     + +    +  L      +      R+    Q + A  TGR +      QN
Sbjct: 2197 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2254

Query: 330  LPRQ----------------------------ERSEEILTQTIQALNRGETIADPLGLAS 361
            +PR                              R ++      +     E  +D     S
Sbjct: 2255 VPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDRGMPFS 2314

Query: 362  DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+      
Sbjct: 2315 VSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 2374

Query: 422  DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            + V    R   K +   + Y  GAK          + +++        S    +      
Sbjct: 2375 ESVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGISHF 2429

Query: 482  HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISA 540
                            ++G          R    G+               +      SA
Sbjct: 2430 MRETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTRVQGSA 2480

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
              +  +  + +++     H    S                     Q  R      K    
Sbjct: 2481 ADIVKIATVNIQKQLETFHSTFKS-------------HGHREGLLQSERTGLLPKKKL-- 2525

Query: 601  IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
              Q          M    + G+ I L +HDE++ E  +     V  +    M        
Sbjct: 2526 --QG---------MFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAIK--L 2571

Query: 660  GLPLKAEGYEAKRY 673
             + L+ +      +
Sbjct: 2572 SVKLRVKVRIGASW 2585


>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
          Length = 2273

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%)

Query: 25   AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62
             + AV+   A  W  +        ++    S++   L                       
Sbjct: 1579 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1637

Query: 63   ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111
               D     V     ++      +   + GI +    +    V        S    L + 
Sbjct: 1638 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1692

Query: 112  ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L     L + ME G  + +     + +            ++  +F    + +    
Sbjct: 1693 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1749

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +E    +      E         +   G           + ++  +   ++    +L  G
Sbjct: 1750 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1806

Query: 231  IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263
               S      +   LFL   +                                   T K 
Sbjct: 1807 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1866

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320
            IL+          LIL     S +    +  L   + ++   R+ R        + TGR 
Sbjct: 1867 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 1926

Query: 321  SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358
            +      QN+PR                            Q                   
Sbjct: 1927 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 1986

Query: 359  -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  
Sbjct: 1987 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2046

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      D V  + R   K +   + Y  GAK          + +++        S   
Sbjct: 2047 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2101

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             ++              +    + ++G          R    G+                
Sbjct: 2102 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2152

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  +         V  + + +        R    S    +    N  T  L + +  
Sbjct: 2153 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2206

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
            G                   M    + G+ I L +HDE++ E  +     V  +    M 
Sbjct: 2207 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2246

Query: 653  KNPSWAKGLPLKAEGYEAKRY 673
                    + LK +      +
Sbjct: 2247 CAIK--LSVKLKVKVKIGASW 2265


>gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus]
          Length = 2398

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%)

Query: 25   AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62
             + AV+   A  W  +        ++    S++   L                       
Sbjct: 1704 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1762

Query: 63   ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111
               D     V     ++      +   + GI +    +    V        S    L + 
Sbjct: 1763 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1817

Query: 112  ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L     L + ME G  + +     + +            ++  +F    + +    
Sbjct: 1818 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1874

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +E    +      E         +   G           + ++  +   ++    +L  G
Sbjct: 1875 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1931

Query: 231  IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263
               S      +   LFL   +                                   T K 
Sbjct: 1932 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1991

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320
            IL+          LIL     S +    +  L   + ++   R+ R        + TGR 
Sbjct: 1992 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 2051

Query: 321  SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358
            +      QN+PR                            Q                   
Sbjct: 2052 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 2111

Query: 359  -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  
Sbjct: 2112 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2171

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      D V  + R   K +   + Y  GAK          + +++        S   
Sbjct: 2172 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2226

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             ++              +    + ++G          R    G+                
Sbjct: 2227 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2277

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  +         V  + + +        R    S    +    N  T  L + +  
Sbjct: 2278 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2331

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
            G                   M    + G+ I L +HDE++ E  +     V  +    M 
Sbjct: 2332 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2371

Query: 653  KNPSWAKGLPLKAEGYEAKRY 673
                    + LK +      +
Sbjct: 2372 CAIK--LSVKLKVKVKIGASW 2390


>gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus]
          Length = 2119

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%)

Query: 25   AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62
             + AV+   A  W  +        ++    S++   L                       
Sbjct: 1425 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1483

Query: 63   ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111
               D     V     ++      +   + GI +    +    V        S    L + 
Sbjct: 1484 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1538

Query: 112  ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L     L + ME G  + +     + +            ++  +F    + +    
Sbjct: 1539 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1595

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +E    +      E         +   G           + ++  +   ++    +L  G
Sbjct: 1596 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1652

Query: 231  IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263
               S      +   LFL   +                                   T K 
Sbjct: 1653 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1712

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320
            IL+          LIL     S +    +  L   + ++   R+ R        + TGR 
Sbjct: 1713 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 1772

Query: 321  SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358
            +      QN+PR                            Q                   
Sbjct: 1773 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 1832

Query: 359  -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  
Sbjct: 1833 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 1892

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      D V  + R   K +   + Y  GAK          + +++        S   
Sbjct: 1893 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 1947

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             ++              +    + ++G          R    G+                
Sbjct: 1948 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 1998

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  +         V  + + +        R    S    +    N  T  L + +  
Sbjct: 1999 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2052

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
            G                   M    + G+ I L +HDE++ E  +     V  +    M 
Sbjct: 2053 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2092

Query: 653  KNPSWAKGLPLKAEGYEAKRY 673
                    + LK +      +
Sbjct: 2093 CAIK--LSVKLKVKVKIGASW 2111


>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
          Length = 2587

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%)

Query: 25   AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62
             + AV+   A  W  +        ++    S++   L                       
Sbjct: 1893 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1951

Query: 63   ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111
               D     V     ++      +   + GI +    +    V        S    L + 
Sbjct: 1952 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 2006

Query: 112  ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L     L + ME G  + +     + +            ++  +F    + +    
Sbjct: 2007 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 2063

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +E    +      E         +   G           + ++  +   ++    +L  G
Sbjct: 2064 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 2120

Query: 231  IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263
               S      +   LFL   +                                   T K 
Sbjct: 2121 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 2180

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320
            IL+          LIL     S +    +  L   + ++   R+ R        + TGR 
Sbjct: 2181 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 2240

Query: 321  SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358
            +      QN+PR                            Q                   
Sbjct: 2241 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 2300

Query: 359  -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  
Sbjct: 2301 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2360

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      D V  + R   K +   + Y  GAK          + +++        S   
Sbjct: 2361 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2415

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             ++              +    + ++G          R    G+                
Sbjct: 2416 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2466

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  +         V  + + +        R    S    +    N  T  L + +  
Sbjct: 2467 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2520

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
            G                   M    + G+ I L +HDE++ E  +     V  +    M 
Sbjct: 2521 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2560

Query: 653  KNPSWAKGLPLKAEGYEAKRY 673
                    + LK +      +
Sbjct: 2561 CAIK--LSVKLKVKVKIGASW 2579


>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
 gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
          Length = 2265

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%)

Query: 25   AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62
             + AV+   A  W  +        ++    S++   L                       
Sbjct: 1571 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1629

Query: 63   ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111
               D     V     ++      +   + GI +    +    V        S    L + 
Sbjct: 1630 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1684

Query: 112  ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L     L + ME G  + +     + +            ++  +F    + +    
Sbjct: 1685 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1741

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +E    +      E         +   G           + ++  +   ++    +L  G
Sbjct: 1742 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1798

Query: 231  IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263
               S      +   LFL   +                                   T K 
Sbjct: 1799 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1858

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320
            IL+          LIL     S +    +  L   + ++   R+ R        + TGR 
Sbjct: 1859 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 1918

Query: 321  SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358
            +      QN+PR                            Q                   
Sbjct: 1919 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 1978

Query: 359  -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  
Sbjct: 1979 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2038

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      D V  + R   K +   + Y  GAK          + +++        S   
Sbjct: 2039 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2093

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             ++              +    + ++G          R    G+                
Sbjct: 2094 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2144

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  +         V  + + +        R    S    +    N  T  L + +  
Sbjct: 2145 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2198

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
            G                   M    + G+ I L +HDE++ E  +     V  +    M 
Sbjct: 2199 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2238

Query: 653  KNPSWAKGLPLKAEGYEAKRY 673
                    + LK +      +
Sbjct: 2239 CAIK--LSVKLKVKVKIGASW 2257


>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
 gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
 gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
 gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
 gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
          Length = 2544

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%)

Query: 25   AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62
             + AV+   A  W  +        ++    S++   L                       
Sbjct: 1850 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1908

Query: 63   ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111
               D     V     ++      +   + GI +    +    V        S    L + 
Sbjct: 1909 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1963

Query: 112  ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L     L + ME G  + +     + +            ++  +F    + +    
Sbjct: 1964 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 2020

Query: 171  RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +E    +      E         +   G           + ++  +   ++    +L  G
Sbjct: 2021 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 2077

Query: 231  IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263
               S      +   LFL   +                                   T K 
Sbjct: 2078 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 2137

Query: 264  ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320
            IL+          LIL     S +    +  L   + ++   R+ R        + TGR 
Sbjct: 2138 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 2197

Query: 321  SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358
            +      QN+PR                            Q                   
Sbjct: 2198 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 2257

Query: 359  -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                   S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  
Sbjct: 2258 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2317

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A+      D V  + R   K +   + Y  GAK          + +++        S   
Sbjct: 2318 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2372

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             ++              +    + ++G          R    G+                
Sbjct: 2373 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2423

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  +         V  + + +        R    S    +    N  T  L + +  
Sbjct: 2424 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2477

Query: 594  GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
            G                   M    + G+ I L +HDE++ E  +     V  +    M 
Sbjct: 2478 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2517

Query: 653  KNPSWAKGLPLKAEGYEAKRY 673
                    + LK +      +
Sbjct: 2518 CAIK--LSVKLKVKVKIGASW 2536


>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
 gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
          Length = 2086

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/671 (13%), Positives = 181/671 (26%), Gaps = 115/671 (17%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVA 70
            ++   + A +   A+   D      +   +  +             L   L    +  + 
Sbjct: 1505 LYQVDDGAYLAGIAFCLSDNVAFYMNMQAEEELEQQPVSTEQKVELLCSLLSRPELTLLI 1564

Query: 71   HNSLFERILFKKTLGIDIPSKRW--ICTSVLARTN--GLPSSLKNACLALNFSEHLTKME 126
            H+   +    ++ L   +   +       V           S +N C             
Sbjct: 1565 HDGKDQLKALRQALP-QLKGMQVKLEDPKVGNWLLQPDKTLSFQNMCQQFAPECTALSHL 1623

Query: 127  EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGER 185
             G         G   S          ++A         +     R    +L+    + E 
Sbjct: 1624 CGSGR-GYSSYGLDASSAILGKVRASIEACLSVHILNGQLENLERIGTGQLLKFFRELEM 1682

Query: 186  DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
             + +    +   G+      + +L + +    KKL+  I +L  G   +   T A+   L
Sbjct: 1683 PIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFELH-GSRFNLGSTQAVAKVL 1741

Query: 246  FLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
                G+         T + IL   +       LIL+    S      +  L +      R
Sbjct: 1742 ----GLHRKANGRISTSRQILEKLDSP--ISQLILDHRKLSMVLAKNMQPLLK-CCQANR 1794

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            + G    Y A  TGR S      QN+ +    +    +                  +   
Sbjct: 1795 VHGQSITYTA--TGRISMSEPNLQNVAKDFLVDLGQEK-----------------INISC 1835

Query: 365  RSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  ++S     L+ AD   +E R+LA ++ +   +K   + +D++    A         
Sbjct: 1836 RSAFVSSNEKHCLLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWNKIAESD 1895

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            VS++ R   K +   + Y  G +          L   +    + S      +   +++  
Sbjct: 1896 VSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFHLAYAGIKAYAS 1950

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +          + + G    L           +      L               +   
Sbjct: 1951 KVVKFARNNGYVETITGRRRYLD---------HINSGEPQLKNQAERQAINSTIQGSAAD 2001

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                 ++                                          Y  KL      
Sbjct: 2002 IAKSAILRMEKN----------------------------------IARYREKL------ 2021

Query: 604  AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662
             ++            +N  ++VL +HDE++ E P      V  + SL M         +P
Sbjct: 2022 GLA------------ENAVNLVLHLHDELIFEVPADKAKKVAKVLSLTMENCVK--LNVP 2067

Query: 663  LKAEGYEAKRY 673
            L+ +    + +
Sbjct: 2068 LRVKLKIGRSW 2078


>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
          Length = 2306

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/734 (11%), Positives = 183/734 (24%), Gaps = 141/734 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W           ++          +P  L   L  +  M    +         
Sbjct: 1616 VVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQKASDKE 1675

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHL 122
                +++      +   + G+ +  + +    V        S    L +   +    E  
Sbjct: 1676 RSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFLPCELP 1734

Query: 123  --TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
               +ME G+ + +     S++           +  +    +      +   +L      +
Sbjct: 1735 LLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQK--EKLQDIFHKV 1792

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 1793 ---EMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 1848

Query: 241  LRMYLFLITGID---------LVDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 1849 IAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHP 1908

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 1909 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 1966

Query: 329  NLPR---------------------------QERSEEILTQTIQALNRGETIADPLG-LA 360
            N+PR                           +   E+  T   +   + E  A   G   
Sbjct: 1967 NVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPF 2026

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    GED++ +  A+     
Sbjct: 2027 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMME 2086

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2087 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINH 2141

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2142 FMKETVKNCRRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQGS 2192

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                     V  + + +                 G    +  +    +  +     +   
Sbjct: 2193 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGVLQSDKTGLFPKRRLPGVFCP 2244

Query: 601  IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
            +                   G   +L +HDE++ E  +     V  +    M        
Sbjct: 2245 V------------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--L 2284

Query: 660  GLPLKAEGYEAKRY 673
             + LK +      +
Sbjct: 2285 SVKLKVKVKIGASW 2298


>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
          Length = 2585

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/734 (11%), Positives = 183/734 (24%), Gaps = 141/734 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W           ++          +P  L   L  +  M    +         
Sbjct: 1895 VVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQKASDKE 1954

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHL 122
                +++      +   + G+ +  + +    V        S    L +   +    E  
Sbjct: 1955 RSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFLPCELP 2013

Query: 123  --TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
               +ME G+ + +     S++           +  +    +      +   +L      +
Sbjct: 2014 LLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQK--EKLQDIFHKV 2071

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 2072 ---EMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2127

Query: 241  LRMYLFLITGID---------LVDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 2128 IAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHP 2187

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 2188 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2245

Query: 329  NLPR---------------------------QERSEEILTQTIQALNRGETIADPLG-LA 360
            N+PR                           +   E+  T   +   + E  A   G   
Sbjct: 2246 NVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPF 2305

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    GED++ +  A+     
Sbjct: 2306 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMME 2365

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2366 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINH 2420

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2421 FMKETVKNCRRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQGS 2471

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                     V  + + +                 G    +  +    +  +     +   
Sbjct: 2472 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGVLQSDKTGLFPKRRLPGVFCP 2523

Query: 601  IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
            +                   G   +L +HDE++ E  +     V  +    M        
Sbjct: 2524 V------------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--L 2563

Query: 660  GLPLKAEGYEAKRY 673
             + LK +      +
Sbjct: 2564 SVKLKVKVKIGASW 2577


>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
 gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
            norvegicus]
          Length = 2547

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/734 (12%), Positives = 179/734 (24%), Gaps = 143/734 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-------------------------DE 64
            +   A  W  +        ++    S++   L                          D+
Sbjct: 1859 VVGLAVCWGGKDAYYLSL-QKEQKQSEMSPSLAPPPLDATLTVKERMEYLQSCLQKKSDQ 1917

Query: 65   TVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN-ACLAL 116
                V     ++      +   + GI +    +    V        S    L +     L
Sbjct: 1918 ERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSIVTSFL 1972

Query: 117  NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 L +  E    I                 +  V++  +F    + +    +E    
Sbjct: 1973 PHELALLEGIETGPGIQSLGLNVNTDHSGRYRAS--VESVLIFNSMNQLNSMLQKENLHD 2030

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            +      E         +   G           + ++  +   ++    +L  G   S  
Sbjct: 2031 IF--CKVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLA-GHSFSFT 2087

Query: 237  QTYALRMYLFLITGIDL-------------VDMSE--------------GTLKSILSHSN 269
                +   LFL   +                                   T K IL+   
Sbjct: 2088 SADDIAQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLK 2147

Query: 270  ITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRWSGCVFQ 326
                   LIL     S +    +  L   + ++   R+ R        + TGR +     
Sbjct: 2148 DLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPVSQSHTATGRITFTEPN 2207

Query: 327  PQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG----------LA 360
             QN+PR                    +  L    Q                         
Sbjct: 2208 IQNVPRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPF 2267

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+   +G D++ +  A+     
Sbjct: 2268 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIE 2327

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             D V    R   K +   + Y  GAK          + +++        S    ++    
Sbjct: 2328 PDAVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYKGINH 2382

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                           + ++G          R    G+                      +
Sbjct: 2383 FMRDTVKNCRRDGFVETILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQGS 2433

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                     V  + + +                 G    +  +           G L + 
Sbjct: 2434 AADIVKVATVNIQKQLETFHPTF--------KSHGHRESMLQSDR--------AGLLPKR 2477

Query: 601  IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
             V         +GM    + G+ I L +HDE++ E  +     V  +    M        
Sbjct: 2478 KV---------KGMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--L 2525

Query: 660  GLPLKAEGYEAKRY 673
             + LK +      +
Sbjct: 2526 SVKLKVKVKIGASW 2539


>gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
 gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
          Length = 2054

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/671 (13%), Positives = 186/671 (27%), Gaps = 120/671 (17%)

Query: 18   KVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL-----QYLRDETVMCVA 70
            K  ++   + + I   ++   D  V        E   +P+ L      + +    +  + 
Sbjct: 1481 KQALFQVDDSSFIAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLV 1540

Query: 71   HNSLFERILFKK----TLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTK 124
            H++  +             I I   R     V           S KN C           
Sbjct: 1541 HDAKEQLKALLHGVPQLHNIGI---RVEDPKVGNWLLEPEKTFSFKNMCQQFAPECTALA 1597

Query: 125  MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
               G         G   S          ++A         +     R          + E
Sbjct: 1598 NLCGSGR-GYSSHGLDSSSAILPKLRASIEACVTVHILKGQIENLER---------IEVE 1647

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
              + ++   +   G+      + +L + +     K++  I K+      +   T A+   
Sbjct: 1648 MPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSKF-NLGSTQAVANV 1706

Query: 245  LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
            L L            T + +L          +LILN    +   +  +  L        R
Sbjct: 1707 LGLHRK---PHGRVSTSRQVLEKLGSP--ISELILNHRKLNMQIVKGMQPLIR-CCKANR 1760

Query: 305  LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
            + G    + A  TGR S      QN+      +  +     ++                 
Sbjct: 1761 IHGHSITHTA--TGRISMSEPNLQNV----AKDFDIRMGPDSVRISC------------- 1801

Query: 365  RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS   +    + L+ AD   +E R+LA ++ +   +    + +D++    A   + P  +
Sbjct: 1802 RSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAE 1861

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            V+++ R+  K +   + Y  G +          L   +    +      + +    ++  
Sbjct: 1862 VTEQMRSGTKQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTE 1916

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
             +     +    + + G    L       ++         + +     V      SA  +
Sbjct: 1917 KVLKFARKLGYVETITGRRRYLDHINSGEQN--------LIKQAERQAVNTTIQGSAADI 1968

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
            A    L M ++       L                                  + EN +Q
Sbjct: 1969 AKRAILDMDKNIGRYWKKLG---------------------------------VEENSIQ 1995

Query: 604  AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662
                                +VL +HDE+V E P+     +     L M         +P
Sbjct: 1996 --------------------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVP 2035

Query: 663  LKAEGYEAKRY 673
            LK +    + +
Sbjct: 2036 LKVKIKMGESW 2046


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 151/467 (32%), Gaps = 62/467 (13%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART 102
               A+ + + + L +  +    H+                LG D      +   +L+  
Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443

Query: 103 NGLP----SSLKNACLALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
              P    +SL+    A   +      +  + +A       G   +       A+ V+A 
Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503

Query: 157 QLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            +      +   +      +RL  L + E  L  L   +   G  +D+D +  L+E    
Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRL--LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTA 561

Query: 216 ERKKLDEDIVKLTDGI----IRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSI 264
                 E               +      L+  LF    +     ++        +L+ +
Sbjct: 562 AADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDL 621

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L  +    L ++L+ +R A+       +  L E V+ D R+  T     A  TGR S   
Sbjct: 622 LEQTRHPFL-ENLMAHRDATKLRQT--VEGLLETVAPDDRIHTTYSQTAA-ATGRLSSLH 677

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN----GKKLVVAD 380
              QN+P                            A   +R   +A         L+ AD
Sbjct: 678 PNLQNIP------------------------VRTEAGRRIREVFVADEVAGEQAVLLSAD 713

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A ++ ++  I+AF  GED++    ++ F    D+V+ EQRA  K M   L 
Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
           Y        +      L +            F+ +       +  QD
Sbjct: 774 YG-----LSSFGLSKQLKISVDEARGLMKGYFDRFGGVPEELIPYQD 815


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/842 (12%), Positives = 188/842 (22%), Gaps = 283/842 (33%)

Query: 7   DIETRSPQ-PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM--PSDLLQY--- 60
           D+ET S +  L               + + +W +            A   P +L +    
Sbjct: 227 DLETNSLRGDLLGAKP---------LVMSMSWLEGQGVTIPLEHHEAKWSPEELNEIYDL 277

Query: 61  ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKN 111
               L D     V  N  F+      T G          T +               L +
Sbjct: 278 FEKFLADRQQPKVGQNIQFDIRFLMNTKGFTEFEDN-RDTKIAYYLIVSQKVDTSKRLSD 336

Query: 112 ACLAL-----------NFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANH------ 152
               L            + +   +      KA I  F +   +    +   A        
Sbjct: 337 IAYELTDMGGYDEPLEQYKKQYKEDYIARKKAEIDAFKEAEKERVECEFKIAMDRYKQEV 396

Query: 153 -------------------------------------------VQAWQLFGEYCKRDVEA 169
                                                          ++   Y   DV+ 
Sbjct: 397 KEAKLIGKPTKSIIKPVKEKVVVPKKSDIKLINEIDGGNFNYDWIPLEIMHPYASGDVDC 456

Query: 170 TRELFKRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERK 218
              ++  L    +    +  L              I   G  +D +    ++ +  +E  
Sbjct: 457 CLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVLLDSEYAELVENIYTEEEH 516

Query: 219 KLDEDIVKLTDGI--------------------------------------------IRS 234
           +L  +I KL +                                                 
Sbjct: 517 RLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVARLRDKYKITDSENKVHFK 576

Query: 235 SRQTYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSN 269
              +      LF + G+ L                             +  L  I  +  
Sbjct: 577 PSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTWRDYKTDKHALAYIAENYP 636

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             +   +L+L     +         L +   + DG + G+    G   T R S      Q
Sbjct: 637 EAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST-RLSANNPNMQ 695

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387
            L                    +            ++        G  ++  D + +E R
Sbjct: 696 QL------------------SSKVGDPRRFDYKYPIKRLFRTRFEGGGMLQLDYSALEMR 737

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +L  IA +    +AF NGED++  T +  +  P D V K+ R   K +   +        
Sbjct: 738 ILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGI-------- 789

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                                                  +     A K  +     E + 
Sbjct: 790 ------------------------------------AYGESPFSIAPKLGVTVEEAERIF 813

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           + + A    + Q  ++  +              RR+                      R 
Sbjct: 814 EEYFASKPSIKQFIEETHQFAQRYGYVETLQGHRRLL---------------------RD 852

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNG 621
               D K     +               K    I+Q     +    M             
Sbjct: 853 SFSKDKKVFNGAMR--------------KSVNTIIQGTGAYLTNLSMVYIDEYIRKHNKR 898

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP------SWAKG---LPLKAEGYEAK 671
             IV+TVHD +V + P      +  +   +M   P       W       P+ A+    +
Sbjct: 899 SRIVITVHDSLVIDCPRDEVDEMAKVAKYIMENLPIDFLMIEWEGKEMRYPIVADVEIGE 958

Query: 672 RY 673
            Y
Sbjct: 959 NY 960


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 106/398 (26%), Gaps = 82/398 (20%)

Query: 287 SAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                +  L     +  DGR+  +L     + TGR S      Q   ++     I    +
Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRSSFLNINQPAL 515

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           +                  +R   IA  GK L+VAD   +E R+LA ++G    ++AF  
Sbjct: 516 EKDRY-------------KIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEA 562

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D +  T                R   +  E+ L +              G        
Sbjct: 563 GGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVPL 601

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                 +     +  +  +         +   K+     +     W      V +   D 
Sbjct: 602 LKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDT 661

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E      +    +                           R     D+    S L    
Sbjct: 662 IERARITKRVHTLL--------------------------GRSRHLPDINTSISVLRGH- 694

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
             L R            VQ  + D+    M    +       G+ ++L VHDE++ E P 
Sbjct: 695 --LERAAI------NTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPS 746

Query: 639 TPYFSVGTL-CSLMTKNPSWA--KGLPLKAEGYEAKRY 673
                   +    M+          + L  +   AK +
Sbjct: 747 ESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784



 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 78/303 (25%), Gaps = 56/303 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQSA-MPSD 56
             D E  +   + K           +T  +        +     ++W D       +   
Sbjct: 29  ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN 111
              Y  +  +  + HN  F++ +     GI      +  T  LAR        L  SL+ 
Sbjct: 85  FRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGF-YADTMHLARLWDSARGGLGYSLEA 142

Query: 112 ACLA--------LNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                       L   +   K       +     +G +   P              +  Y
Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202

Query: 163 CKRDVEATRELFKRLIPLSDGE---------------RDLWL-----LDQTINDRGYRID 202
              D   T  L+  L                       +L+      +   +   G R+D
Sbjct: 203 SAHDSVCTWHLWSSLKKKLQKASWYMEGDKRGNMYQFYELYWRHFGDVLVQMEAEGMRVD 262

Query: 203 LDLVLKLQELIAQERK----KLDEDIVKLTDGII-RSSRQTYALRMYLFLITGIDLVDMS 257
              + +++++   +++    +  +   +     +  +      +R  LF   G       
Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319

Query: 258 EGT 260
              
Sbjct: 320 PSV 322


>gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo
            abelii]
          Length = 2728

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/734 (11%), Positives = 181/734 (24%), Gaps = 140/734 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W       +   ++          +P  L   L  +  M    +         
Sbjct: 2037 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDQE 2096

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120
                +++      +   + GI +  + +    V        S   +L +     L     
Sbjct: 2097 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 2155

Query: 121  HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             L  ME  + + +       +           +  +    +      +   +   R    
Sbjct: 2156 LLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 2211

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G         + Q+ I Q + +  E       G   S   +  
Sbjct: 2212 -KVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHSFSFTSSDD 2270

Query: 241  LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 2271 IAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2330

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 2331 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2388

Query: 329  NLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------------LA 360
            N+PR                    + +L        +G ++                   
Sbjct: 2389 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADRGMPF 2448

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+     
Sbjct: 2449 SISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2508

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2509 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2563

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2564 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTTVQGS 2614

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                     V  + + +                 G    +  +    + ++         
Sbjct: 2615 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSQK--------R 2658

Query: 601  IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659
             +Q          M    + G+ I L +HDE++ E  +     V  +    M        
Sbjct: 2659 KLQG---------MFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--L 2706

Query: 660  GLPLKAEGYEAKRY 673
             + LK +      +
Sbjct: 2707 SVKLKVKVKIGASW 2720


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 106/398 (26%), Gaps = 82/398 (20%)

Query: 287 SAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                +  L     +  DGR+  +L     + TGR S      Q   ++     I    +
Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRSSFLNINQPAL 515

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
           +                  +R   IA  GK L+VAD   +E R+LA ++G    ++AF  
Sbjct: 516 EKDRY-------------KIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEA 562

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G D +  T                R   +  E+ L +              G        
Sbjct: 563 GGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVPL 601

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                 +     +  +  +         +   K+     +     W      V +   D 
Sbjct: 602 LKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDT 661

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E      +    +                           R     D+    S L    
Sbjct: 662 IERARITKRVHTLL--------------------------GRSRHLPDINTSISVLRGH- 694

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638
             L R            VQ  + D+    M    +       G+ ++L VHDE++ E P 
Sbjct: 695 --LERAAI------NTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPS 746

Query: 639 TPYFSVGTL-CSLMTKNPSWA--KGLPLKAEGYEAKRY 673
                   +    M+          + L  +   AK +
Sbjct: 747 ESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 77/303 (25%), Gaps = 56/303 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQSA-MPSD 56
             D E  +   + K           +T  +        +     ++W D       +   
Sbjct: 29  ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN 111
              Y  +  +  + HN  F++ +     GI      +  T  LAR        L  SL+ 
Sbjct: 85  FRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGF-YADTMHLARLWDSARGGLGYSLEA 142

Query: 112 ACLA--------LNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                       L   +   K       +     +G +   P              +  Y
Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202

Query: 163 CKRDVEATRELFKRLIPLS-------------------DGERDLW-LLDQTINDRGYRID 202
              D   T  L+  L                       +     +  +   +   G R+D
Sbjct: 203 SAHDSVCTWHLWSSLKKKLLKASWYMEGDKRGNMYQFYELYWRHFGDVLVRMEAEGMRVD 262

Query: 203 LDLVLKLQELIAQERK----KLDEDIVKLTDGII-RSSRQTYALRMYLFLITGIDLVDMS 257
              + +++++   +++    +  +   +     +  +      +R  LF   G       
Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319

Query: 258 EGT 260
              
Sbjct: 320 PSV 322


>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
          Length = 1154

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 87/753 (11%), Positives = 187/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 448  EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 507

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 508  KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 566

Query: 108  ---SLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +   +   +    L  ME  + + +       +           +  +    + 
Sbjct: 567  QEPTLHSIVTSFFPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 626

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 627  NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 681

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 682  QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 740

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 741  RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 800

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 801  SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 858

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 859  PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 918

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 919  NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 973

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 974  DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 1024

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 1025 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 1076

Query: 583  AT-SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +  + L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 1077 SDQTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 1117

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 1118 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 1148


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 101/383 (26%), Gaps = 88/383 (22%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 811  GKNGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 847

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   IA+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 848  ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPH 904

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              + V K +                           G D         +  +     +  
Sbjct: 905  IREAVEKREV------------------LLEWHPQPGEDKPPVPLLKDAFGSERRKAKML 946

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  +         A   K+         + W  + + VL   +   +    +      + 
Sbjct: 947  NFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLL- 1005

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                      R   +  V    +          R          
Sbjct: 1006 -------------------------GRARSFPSVHHATASQRGHI---ERAAI------N 1031

Query: 600  NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
              VQ  + D+    M          + G+ ++L VHDE++ E P         +    M 
Sbjct: 1032 TPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECME 1091

Query: 653  KNPSW--AKGLPLKAEGYEAKRY 673
            K         + L  +   A+ +
Sbjct: 1092 KPFDGKNILSVDLAVDAKCAQNW 1114



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 66/302 (21%)

Query: 2   SKL--FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS- 51
             L    D E         V      +   I   +        + +    +W D  +   
Sbjct: 355 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 410

Query: 52  -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP--- 106
             +  +   +  D ++  V HN  F+  + +     D+    +   T  +AR        
Sbjct: 411 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 467

Query: 107 ---SSLKNA--------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
               SL+                   L   +   K   GK  + +               
Sbjct: 468 VGGYSLEALTRDSKVMSGAHMSNGEEL-IGKVSMKTIFGKKKLKKDGTEGKI-ITIAPVE 525

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLI-PLSDGERDLW-------------------L 189
               +  + +  Y   D  +T +L++ +   L D E  L                     
Sbjct: 526 VLQREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGE 585

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMY 244
           L   +   G  +D   + K++++   E +               D    +      LR  
Sbjct: 586 LLVQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQL 645

Query: 245 LF 246
           LF
Sbjct: 646 LF 647


>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1683

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/730 (12%), Positives = 187/730 (25%), Gaps = 172/730 (23%)

Query: 28   AVITLCAYAWDDEPVKLWDR---------------TEQSAMPSDLL-------------- 58
              +   A  W D PV   +                  +  +  ++               
Sbjct: 1033 FEVMGVAICWKDSPVYYVNLSIVHKSFQHATNPNCGNKEVIIREVNSSLIESQTRWRHVG 1092

Query: 59   QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-------------------------- 92
              L    V  ++ +   +  +     G+ +PS R                          
Sbjct: 1093 TMLSKTGVRKISWDLKIQLQVL-NNPGLHVPSARQTTEHERGVPDVKAREGEVVALPSIR 1151

Query: 93   ----WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK-ALIARFCKGSIDSPPYDC 147
                 I T V A         + +   L+  + + K   G+ A  A       +      
Sbjct: 1152 VQMPCIDTRVAAWLLWPD---EESTRLLSLEQEVKKRLPGEIAAAAGRAGRWANQMGCVA 1208

Query: 148  TRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                  +  Q++  +C    +     L + L      E  L  +   +      +D+ + 
Sbjct: 1209 HNGCCRRVAQIWVLHCAFWKLLVAEGLHEAL---LQLEMPLVRVLADMETWSLGLDMRVC 1265

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTL 261
             K Q  +  + ++L+    +   G+  S      +   L+    + +           T 
Sbjct: 1266 RKAQSHLHCKLRELEAQ-GEKLAGMSFSLSAPAEVAHVLYRHLKLPVPPGCKGKHHPSTD 1324

Query: 262  KSILSHSNITQLAKDLILNRLASSGSAILKL----------NTLSEAVSSDGR-----LR 306
            K  L          D+I    + S      L            L  +     R     + 
Sbjct: 1325 KQALEFLRNHHPIADIIKEHRSLSKLLQSTLGSIIAWAKSPEPLFSSQERSSRGEIFSIA 1384

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            G      ++ TGR S      Q +  +      +          E   + + + +   R 
Sbjct: 1385 GHWLQT-STATGRLSMEDPNLQCV--EHAVSFTIEGGRSLDGDQEKANNVVEVNA---RQ 1438

Query: 367  CIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKV 424
              + S  G  L+ AD + IE R++A  +G+   +   ++   D++    A+    P+ +V
Sbjct: 1439 AFVPSQEGWILLSADYSQIELRLMAHFSGDPSLVSLLSHPTGDLFRVLAAQWTGLPMCEV 1498

Query: 425  SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
            S +QR   K +   + Y  G            L+       V        +    +    
Sbjct: 1499 SDKQRERTKRLVYGILYGMGVNTLAE-----HLECPVAEAQVMLERFKGTFPLVTTWLSH 1553

Query: 485  MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
              D   +      L G    L K             W +  +     V      SA  + 
Sbjct: 1554 AVDSCRQKGYITTLSGRKRYLDKIN--------TGKWGEQAKAERQAVNSICQGSAADLI 1605

Query: 545  NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                                  +L    V    S  +                     Q 
Sbjct: 1606 ----------------------KLAMIKVHDAISSSH---------------------QG 1622

Query: 605  ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663
                               ++L +HDE++ E        V  +    M    +    +PL
Sbjct: 1623 S----------------CRLLLQIHDELLLEVDKRVLKHVAQILRSSMEGAIT--LRVPL 1664

Query: 664  KAEGYEAKRY 673
            + +      +
Sbjct: 1665 RTKLQVGTSW 1674


>gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
 gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
          Length = 917

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 100/704 (14%), Positives = 190/704 (26%), Gaps = 130/704 (18%)

Query: 28  AVITLCAYAWDDEPVKLWDR----------------TEQSAMPSDLLQYLRDETVMCVAH 71
             +   A  W++ P+   +                          +   ++ ++V  +  
Sbjct: 275 FEVFGLAVCWENSPIYYCNFPKDLVTTSNNDFREMWGNFQRRWEKITDIMQQKSVQKMTW 334

Query: 72  NSLFERILFK-----------KTLGIDI-PSKRWICTSVLARTNGLPSS----LK--NAC 113
           N   +    K             L   +      +     +     P S    L      
Sbjct: 335 NLKIQIQALKSPYISCQRLERFHLDHKMLDKVEVLD---NSYVLLSPVSVYNGLDICLLA 391

Query: 114 LALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             L   E    +    K +  R    +  +   D    N +         C R    TR 
Sbjct: 392 WVLWPDEESRTVPNLEKFVKRRLHSEAAAAANRDGRWRNQMHKAAH--NGCCRRSAQTRA 449

Query: 173 LFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           L+  L  L            E  L  +   +   G   D+D  L  + +I ++ K+L+++
Sbjct: 450 LYTVLKKLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHIITKKLKELEKE 509

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDL 277
                 G   S   T  +   L++   + +            T K  L H         +
Sbjct: 510 AY-RLAGKNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDHLRDQHPIIPV 568

Query: 278 ILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           I      +      L ++         S    + G      ++ TGR S      Q    
Sbjct: 569 IKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQT-STATGRLSMEEPNLQ---- 623

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391
                E L +     +  +            VR   I        V AD + IE R++A 
Sbjct: 624 ---CVEHLVEFDTGKSNKDYCMSVDDHHKINVRDFFIPTKENWLFVTADYSQIELRLMAH 680

Query: 392 IAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            + +   ++  +  + D++    ++  +     +S ++R   K +   + Y  GA     
Sbjct: 681 FSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANSLAE 740

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                 L+        K  S    +    S    +     +    + L+G    L K   
Sbjct: 741 -----QLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGRRRFLTKITA 795

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
                      K+  +     V      SA  +  V  +                     
Sbjct: 796 GNS--------KEKAKAQRQAVNSICQGSAADIIKVAMI-------------------RL 828

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
             V  + +    +T ++ R+ +  G     I+Q                        VHD
Sbjct: 829 HSVITNRTRATDSTDEVTRKFSEFGGQCHLILQ------------------------VHD 864

Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
           E+V E         G L    M +  S    +PL+ +    K +
Sbjct: 865 ELVLEVVPCMVAQAGRLLQICMEEAASLL--VPLRTKIKVGKTW 906


>gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus]
          Length = 530

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/501 (13%), Positives = 137/501 (27%), Gaps = 61/501 (12%)

Query: 54  PSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS-----VLARTNGLPS 107
              L Q LR + V  +  N+  F + +  +  G  I  K+   +      + A       
Sbjct: 31  LQVLFQILRCK-VPVICFNAKDFLKTVL-QVYGSGISWKQVADSIVLDPRIAAWLINSS- 87

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY---CK 164
                           +        +   +             +      L   Y     
Sbjct: 88  --DTV--------PSFECLLQYFEKSYSVETVNTDTGGLRNSRHQNLVVNLQKLYTIMMG 137

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +   +   +L      E  L  +   +      +D   + K  E++    K+L+E+ 
Sbjct: 138 LAHDLQVQGLWKLFCTL--ELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEA 195

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMS----EGTLKSILSHSNITQLAK 275
            ++  G       +  LR  LF    +      +          T + +LS         
Sbjct: 196 HQIA-GERFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLP 254

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            L+L            ++ L   +   G +  T    G + TGR S      Q + +   
Sbjct: 255 KLMLEYRQVRKMKSTYVDGLRTCMRK-GFICPTWNQTG-TVTGRLSSKHPNIQGISKHPV 312

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                           TI+          R+  ++  G   + AD + IE R+LA ++ E
Sbjct: 313 RITKKQYIKGKEEEILTISP---------RALFVSKKGYTFLAADFSQIELRILADLSAE 363

Query: 396 DWKIKAFANGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
              +K F   E   + T   ++    P ++V +  R   K +  ++ Y  G +       
Sbjct: 364 PELLKLFQEPETTDIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAEC-- 421

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
              L +          S  + +++          Q         ++G    L        
Sbjct: 422 ---LGITPHEAGHFIESFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGRKRLLA------- 471

Query: 514 HQGVLQLWKDLTEGFACVVQE 534
              +      L          
Sbjct: 472 --NINSQDYKLRTQAERQAVN 490


>gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes]
          Length = 2499

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W       +   ++          +P  L   L  +  M    +         
Sbjct: 1809 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1868

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120
                +++      +   + GI +  + +    V        S   +L +     L     
Sbjct: 1869 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 1927

Query: 121  HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             L  ME  + + +       +           +  +    +      +   +   R    
Sbjct: 1928 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 1983

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 1984 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2041

Query: 241  LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 2042 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2101

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 2102 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2159

Query: 329  NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360
            N+PR                    + +L        +G            E  AD     
Sbjct: 2160 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2219

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+     
Sbjct: 2220 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2279

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2280 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2334

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2335 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2385

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599
                     V  + + +                 G    +  +    L R+R   G    
Sbjct: 2386 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2436

Query: 600  NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658
              +                  G   +L +HDE++ E  +     V  +    M       
Sbjct: 2437 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2476

Query: 659  KGLPLKAEGYEAKRY 673
              + LK +      +
Sbjct: 2477 LSVKLKVKVKIGASW 2491


>gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes]
          Length = 2500

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W       +   ++          +P  L   L  +  M    +         
Sbjct: 1810 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1869

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120
                +++      +   + GI +  + +    V        S   +L +     L     
Sbjct: 1870 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 1928

Query: 121  HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             L  ME  + + +       +           +  +    +      +   +   R    
Sbjct: 1929 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 1984

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 1985 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2042

Query: 241  LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 2043 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2102

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 2103 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2160

Query: 329  NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360
            N+PR                    + +L        +G            E  AD     
Sbjct: 2161 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2220

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+     
Sbjct: 2221 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2280

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2281 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2335

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2336 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2386

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599
                     V  + + +                 G    +  +    L R+R   G    
Sbjct: 2387 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2437

Query: 600  NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658
              +                  G   +L +HDE++ E  +     V  +    M       
Sbjct: 2438 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2477

Query: 659  KGLPLKAEGYEAKRY 673
              + LK +      +
Sbjct: 2478 LSVKLKVKVKIGASW 2492


>gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes]
          Length = 1762

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W       +   ++          +P  L   L  +  M    +         
Sbjct: 1072 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1131

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120
                +++      +   + GI +  + +    V        S   +L +     L     
Sbjct: 1132 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 1190

Query: 121  HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             L  ME  + + +       +           +  +    +      +   +   R    
Sbjct: 1191 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 1246

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 1247 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 1304

Query: 241  LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 1305 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 1364

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 1365 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 1422

Query: 329  NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360
            N+PR                    + +L        +G            E  AD     
Sbjct: 1423 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 1482

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+     
Sbjct: 1483 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 1542

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 1543 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 1597

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 1598 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 1648

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599
                     V  + + +                 G    +  +    L R+R   G    
Sbjct: 1649 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 1699

Query: 600  NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658
              +                  G   +L +HDE++ E  +     V  +    M       
Sbjct: 1700 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 1739

Query: 659  KGLPLKAEGYEAKRY 673
              + LK +      +
Sbjct: 1740 LSVKLKVKVKIGASW 1754


>gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes]
          Length = 2596

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W       +   ++          +P  L   L  +  M    +         
Sbjct: 1906 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1965

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120
                +++      +   + GI +  + +    V        S   +L +     L     
Sbjct: 1966 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 2024

Query: 121  HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             L  ME  + + +       +           +  +    +      +   +   R    
Sbjct: 2025 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 2080

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 2081 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2138

Query: 241  LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 2139 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2198

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 2199 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2256

Query: 329  NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360
            N+PR                    + +L        +G            E  AD     
Sbjct: 2257 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2316

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+     
Sbjct: 2317 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2376

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2377 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2431

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2432 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2482

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599
                     V  + + +                 G    +  +    L R+R   G    
Sbjct: 2483 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2533

Query: 600  NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658
              +                  G   +L +HDE++ E  +     V  +    M       
Sbjct: 2534 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2573

Query: 659  KGLPLKAEGYEAKRY 673
              + LK +      +
Sbjct: 2574 LSVKLKVKVKIGASW 2588


>gi|114588752|ref|XP_001165150.1| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
          Length = 2730

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72
            +   A  W       +   ++          +P  L   L  +  M    +         
Sbjct: 2040 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 2099

Query: 73   ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120
                +++      +   + GI +  + +    V        S   +L +     L     
Sbjct: 2100 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 2158

Query: 121  HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             L  ME  + + +       +           +  +    +      +   +   R    
Sbjct: 2159 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 2214

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E         +   G           + ++  +   ++    +L  G   S   +  
Sbjct: 2215 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2272

Query: 241  LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273
            +   LFL   +                                   T K +L+       
Sbjct: 2273 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2332

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328
               LIL     + +    +  L      +      R+    Q + A  TGR +      Q
Sbjct: 2333 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2390

Query: 329  NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360
            N+PR                    + +L        +G            E  AD     
Sbjct: 2391 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2450

Query: 361  SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+     
Sbjct: 2451 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2510

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             + V  + R   K +   + Y  GAK          + +++        S    +     
Sbjct: 2511 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2565

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                             ++G          R    G+                      +
Sbjct: 2566 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2616

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599
                     V  + + +                 G    +  +    L R+R   G    
Sbjct: 2617 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2667

Query: 600  NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658
              +                  G   +L +HDE++ E  +     V  +    M       
Sbjct: 2668 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2707

Query: 659  KGLPLKAEGYEAKRY 673
              + LK +      +
Sbjct: 2708 LSVKLKVKVKIGASW 2722


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 190/699 (27%), Gaps = 175/699 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L +D ET          +  Y     I L  +  +     +             +  
Sbjct: 35  LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110
           L+      + HN+ F+  + ++TLG+ +     +   T + +                L+
Sbjct: 86  LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                        +    KA +AR  K    +        +       +  Y   D    
Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             L  ++ PL           E  L  +   +   G+ +D+D   KL   + ++ +    
Sbjct: 200 SRLLGKVAPLVPEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276
                      +   T  L   L   TG+ +   +    + +              LAK 
Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I             +    E   ++ R+   +    A RT R S      QNLP  +  
Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGDW- 373

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR C +A  G+ +V  D    E RVLA +A + 
Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALANDR 407

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             I+AF +  D++  T            S   R +GK++  A  +  G       A    
Sbjct: 408 TMIQAFKDNADLHQITADA---------SGVDRKVGKMVNFAYVFGSGPSTIAAQA---- 454

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                                    +     + V   +   +  
Sbjct: 455 ----------------------------------------GITFPEAKRVIAGFEQSYPE 474

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           V  L K L    A +                            ++ P+ RRL     +  
Sbjct: 475 VTALSKSLQREAANLGY--------------------------VITPTGRRLPVDPDR-- 506

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634
                            G      +VQ+ SRD+    +    + G   +  L +HDE+++
Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLA 549

Query: 635 ETP-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
             P      +   +  +M +      G+ +  +     R
Sbjct: 550 SVPEAEAEATAKEIGRIMEQTFR---GVLINTDPEVGGR 585


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 84/783 (10%), Positives = 185/783 (23%), Gaps = 136/783 (17%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
              D E  +   + +       +   I   +        + D    +W D    +   +  
Sbjct: 388  ACDTE-VAKIDVKQQTP---VDHGEIICFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLV 443

Query: 56   DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
            +   + +D ++  V HN  F+  + +           +   T  +AR            S
Sbjct: 444  EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500

Query: 109  LKNA--------------CLALNFSE-----HLTKMEEGKALIARFCKGSIDSPP----- 144
            L+                   L   E        K   G+  + +       +       
Sbjct: 501  LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560

Query: 145  ------YDCTRANHVQAWQLFGEYCKRDVEATRELFK-------RLIPLSDGERDLW-LL 190
                        + + +      Y     +  + ++         +    +     +  L
Sbjct: 561  LQKTERELWICYSALDSISTLMLYESLKNKLAKRIWTFDGVRKGSMYEFYEKYWRPFGEL 620

Query: 191  DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYL 245
               +   G  +D   + +++++   E++               D    +      LR   
Sbjct: 621  LVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQLF 680

Query: 246  F----------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA------------ 283
            F               +         K            + + L+R+             
Sbjct: 681  FGGIQNRKNSDESLPYEKEFKVPNIDKVTEEGKKAPTKFRKIRLHRICDLIDTEMYTASG 740

Query: 284  SSGSAILKLNTLSEAVSSDGRLRGTLQFYG-----ASRTGRWSGCVFQPQNLPRQERSEE 338
                +   L  LS  VS+D  +              S     +     P   P       
Sbjct: 741  WPSVSGDALKALSGKVSADFDILDEADDNAEEDPETSIDEALATNNEVPSQEPEVSIYGS 800

Query: 339  ILTQTIQALNRGETIADP-----LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI- 392
                        E          +      + + I+   G+     D++G   R+   + 
Sbjct: 801  AYNAFGGGQKGIEACHAIAALCEMCSIGSLISNFILPLQGQ-----DVSGENGRIHCSLN 855

Query: 393  AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA------LGYQGGAK 446
               +    +             K            Q     V +        L +    K
Sbjct: 856  INTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLANCK 915

Query: 447  VFKTMASHCGLDLQQFSQNVK--STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                     G    + + N+        E+       H    ++ P   +     G+   
Sbjct: 916  SMLDAFKAGGDFHSRTAMNMYTHIREAVENGRVLLEWHPQPGEEKPPVPLLKDAFGSERR 975

Query: 505  L-----VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                     A+     G+ + WK   +     V               +           
Sbjct: 976  KAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYRDRKEVSDWQEQRKFEAR-EFRR 1034

Query: 560  IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---- 615
            +     R   +  VK   +   +    + R            VQ  + D+    M     
Sbjct: 1035 VHTLLGRARWFPSVK---NATGSVKGHIERAAI------NTPVQGSAADVAMCAMLEISK 1085

Query: 616  --NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNP--SWAKGLPLKAEGYEA 670
                 + G+ ++L VHDE++ E P+     ++  +   M+K         + L  +   A
Sbjct: 1086 NARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVDSKCA 1145

Query: 671  KRY 673
            K +
Sbjct: 1146 KNW 1148


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 116/285 (40%), Gaps = 57/285 (20%)

Query: 402 FANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           F NGED+Y  T +  F  P++K   + E R  GK+  LA GY G     K M        
Sbjct: 1   FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------- 53

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                                            A+K  L     + +  AWRA +  ++Q
Sbjct: 54  ---------------------------------ALKMGLSKDELQPIVDAWRAANPNIVQ 80

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
           LW D+       +  G  ++ R       L   +    + I LPS RRL Y       + 
Sbjct: 81  LWHDVDNAATRAISTGSPVTLR------NLGFEKKSGMLFINLPSGRRLAYVKPGIGMNR 134

Query: 580 LNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630
               +          +  +  TYGGKL ENIVQA +RD+L E +      G  IV+ +HD
Sbjct: 135 FGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIHD 194

Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           E+V + P     +V  +C+L+ + P    GLP+ A GYE   Y+K
Sbjct: 195 EVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239


>gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia
           guttata]
          Length = 631

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 66/493 (13%), Positives = 132/493 (26%), Gaps = 65/493 (13%)

Query: 65  TVMCVAHNSLFE-RILFKKTLGIDIPSKRWI-----CTSVLARTNGLPSSLKNACLALNF 118
            V  +  N+  +      +  G +I  K+          + A                  
Sbjct: 134 KVPIICFNAK-DFLRTLLQIYGNEISWKQVANSVVLDPRIAAWLINPS---DTV------ 183

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                +    K     F K          T      ++Q  G   ++      +L   L 
Sbjct: 184 --PSFECLIQK----YFEKPFSKGAENTDTDTLRNISYQNLGVNLEKLYNVMMDLAHGLK 237

Query: 179 P------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   +      +D   + K  E++    K+L+ +  +   G  
Sbjct: 238 AQGLWNLFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHE-VAGER 296

Query: 233 RSSRQTYALRMYLFLITGID--LVDMSE-------GTLKSILSHSNITQLAKDLILNRLA 283
                +  LR  LF    +      +          T + +L+          +IL    
Sbjct: 297 FLLTSSCQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDLHPLPKIILEYRQ 356

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   ++ L       G +  T    G + TGR S      Q + +   +       
Sbjct: 357 VHKMKSTYVDGL-RTCMKKGFISSTWNQTG-TVTGRLSAKHPNIQGISKHPVTIAKKQYI 414

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                   TI+          R+  ++  G   + AD + IE R+LA ++ E   +K F 
Sbjct: 415 KGKEEDIITISP---------RTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQ 465

Query: 404 NGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
             E   +     ++    P ++V    R   K +  ++ Y  G +          L +  
Sbjct: 466 EPEITDIFATLASQWKGIPSEQVKHADREQAKRIVYSVVYGAGKERLADC-----LGITP 520

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
              +    S  + +++         +Q         ++G    L           +    
Sbjct: 521 VQASQFIESFMQKYKKVHEFTKKTIEQCRNKGYVVSIMGRKRPLA---------NINAQD 571

Query: 522 KDLTEGFACVVQE 534
             L          
Sbjct: 572 YKLRTQAERQAVN 584


>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
 gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
          Length = 2235

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 152/502 (30%), Gaps = 98/502 (19%)

Query: 175  KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            + L    + E  + +    +   G+      +  L + +    KKL+  I +L  G   +
Sbjct: 1821 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELH-GSRFN 1879

Query: 235  SRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               T A+   L    G+         T + IL   +       LILN    S      + 
Sbjct: 1880 LGSTQAVAKVL----GLHRKANGRISTSRQILEKLDSPM--SQLILNYRKLSMLLSKNMQ 1933

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L +      R+ G    Y A  TGR S      QN+      +  +    + +N     
Sbjct: 1934 PLLK-CCQANRVHGQSITYTA--TGRISMSEPNLQNV----AKDFEIQLGAEKINISC-- 1984

Query: 354  ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       RS     +GK+ L+ AD   +E R+LA ++ +   +K   + +D++   
Sbjct: 1985 -----------RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAI 2033

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             A     P  +VS++ R   K +   + Y  G +          L   +    + S    
Sbjct: 2034 AAHWNKIPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFH 2088

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              +   +++ + +          + + G    L           +        +     +
Sbjct: 2089 LAYAGIKAYAMKVVKFARNNGYVETITGRRRYLDHINSGE--PQIKN------QAERQAI 2140

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                  SA  +A    L M ++       L                              
Sbjct: 2141 NSTIQGSAADIAKSAILRMEKNIGRYREKLG----------------------------- 2171

Query: 593  YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651
                L EN V                    ++VL +HDE++ E P      V  + SL M
Sbjct: 2172 ----LAENAV--------------------NLVLHLHDELIFEVPVDKAKKVAKVLSLTM 2207

Query: 652  TKNPSWAKGLPLKAEGYEAKRY 673
                     +PL+ +    + +
Sbjct: 2208 ENCVK--LSVPLRVKLKIGRSW 2227


>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
 gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
          Length = 2218

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 152/502 (30%), Gaps = 98/502 (19%)

Query: 175  KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            + L    + E  + +    +   G+      +  L + +    KKL+  I +L  G   +
Sbjct: 1804 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELH-GSRFN 1862

Query: 235  SRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               T A+   L    G+         T + IL   +       LILN    S      + 
Sbjct: 1863 LGSTQAVAKVL----GLHRKANGRISTSRQILEKLDSPM--SQLILNYRKLSMLLSKNMQ 1916

Query: 294  TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             L +      R+ G    Y A  TGR S      QN+      +  +    + +N     
Sbjct: 1917 PLLK-CCQANRVHGQSITYTA--TGRISMSEPNLQNV----AKDFEIQLGAEKINISC-- 1967

Query: 354  ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                       RS     +GK+ L+ AD   +E R+LA ++ +   +K   + +D++   
Sbjct: 1968 -----------RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAI 2016

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             A     P  +VS++ R   K +   + Y  G +          L   +    + S    
Sbjct: 2017 AAHWNKIPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFH 2071

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              +   +++ + +          + + G    L           +        +     +
Sbjct: 2072 LAYAGIKAYAMKVVKFARNNGYVETITGRRRYLDHINSGE--PQIKN------QAERQAI 2123

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                  SA  +A    L M ++       L                              
Sbjct: 2124 NSTIQGSAADIAKSAILRMEKNIGRYREKLG----------------------------- 2154

Query: 593  YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651
                L EN V                    ++VL +HDE++ E P      V  + SL M
Sbjct: 2155 ----LAENAV--------------------NLVLHLHDELIFEVPVDKAKKVAKVLSLTM 2190

Query: 652  TKNPSWAKGLPLKAEGYEAKRY 673
                     +PL+ +    + +
Sbjct: 2191 ENCVK--LSVPLRVKLKIGRSW 2210


>gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis
           domestica]
          Length = 816

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 61/486 (12%), Positives = 139/486 (28%), Gaps = 53/486 (10%)

Query: 67  MCVAHNSL-FERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
             +  N+  F + + +          +     +   + A                +    
Sbjct: 318 TVICFNAKEFVKTVLQVYGSYCHWKHVVDFVVLDPRIAAWLLDPS---DTISSFEDLVRK 374

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +      +       S +    +  +   +          K  V    +LF  L    
Sbjct: 375 YFEESVTMKVNNTNGGSSHNMMFSNQRKNLRILYRITVDLCSKLKVCGLWQLFYTL---- 430

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E  L  +   +    +++D + + +  +L+    K+L+++   +  G          L
Sbjct: 431 --ELPLIPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAH-VAAGEQFLVTSNNQL 487

Query: 242 RMYLFLITGI-------DLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           R  LF    +        L          T +++L+          +IL           
Sbjct: 488 REVLFDKLKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQIHKVKST 547

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            ++ L   +   G +  T    G + +GR S      Q + +               +  
Sbjct: 548 FVDGLLSCMRK-GFIAPTWNQTG-TVSGRLSAKKPNIQGISKHPIQITKHQYEQGKEDEK 605

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
            T++          R+  I+S G   + AD + IE R+LA ++ +   +K F   E + V
Sbjct: 606 TTVSP---------RTMFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQEPESLDV 656

Query: 411 TT--YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
                ++    P+++V+  +R   K +  ++ Y  G +          L +     +   
Sbjct: 657 FMSLTSQWKGIPLEQVTHVEREQTKRIVYSVVYGAGKERLAAC-----LGVTSLQSSQFI 711

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            S  + +++          Q         ++G    L           +      L    
Sbjct: 712 ESFLQKYKKIHDFTQETIMQCHHKGYVTSIMGRRRPL---------PNINAKDYRLRTQA 762

Query: 529 ACVVQE 534
                 
Sbjct: 763 ERQAVN 768


>gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi]
 gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi]
          Length = 475

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/504 (15%), Positives = 137/504 (27%), Gaps = 115/504 (22%)

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              + E    +L   I   G   D +  L L   + Q+  +++     ++     +    
Sbjct: 69  KSVELELKSVVLFSEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIPF-NFGSA 127

Query: 239 YALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
             +   LF+   I   + S      T K +L           LIL     + +    L  
Sbjct: 128 AEISQILFVRLQIPPPNASTGRHYSTNKIVLQQLAPKYPIISLILEWRRINTALTTSLPI 187

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L +   SDGR+R    F     TGR        QN+ +    +                 
Sbjct: 188 LLKLCCSDGRIR--ANFITHCCTGRVLTVHPNVQNVQKDAIID----------------- 228

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +RS  I   G+ L+ +D   +E R+LA ++ +   I  F   +D +     
Sbjct: 229 ------GFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLFLTKDDFFEIITN 282

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           K  N       K  R   K +   + Y  G                              
Sbjct: 283 KW-NKNETLHIKVDRNKVKQLCYGIIYGMG------------------------------ 311

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                             + +  +     + +  ++      V      +          
Sbjct: 312 --------------AISLSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRTNG-- 355

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
                                    +     RR     +      L T  +Q  R+    
Sbjct: 356 ------------------------FVSTLLGRRRFLPQITSAV--LQTELAQAERQAI-- 387

Query: 595 GKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS-VGTLCS 649
                  +Q    ++    + N  KN       IV+ +HDE++ ET ++   S V  +  
Sbjct: 388 ----NTCIQGSVAELFKMALLNLRKNLLGTNSSIVMQLHDEVLIETDESSIASIVEIIKH 443

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
            MT        +PL  +    K +
Sbjct: 444 SMTSVTP-NLRVPLAVKISFGKSW 466


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 128/484 (26%), Gaps = 117/484 (24%)

Query: 216  ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMS----EGTLKSI 264
              K+L+++      G          LR  LF    +        L  M       T  ++
Sbjct: 959  RLKELEQEAH-FVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTV 1017

Query: 265  LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            LS          +IL            ++ L   +   G +       G + TGR S   
Sbjct: 1018 LSALQDLHPLPRIILEYRQVHKIKSTFVDGLRAHM-KKGSVSSVWNQTG-TVTGRLSAKR 1075

Query: 325  FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
               Q + +                   T++          RS  ++  G+  + AD + I
Sbjct: 1076 PNMQGISKLPIQIGAPRNAKGEAGDALTVSA---------RSLFVSPEGRSFLAADFSQI 1126

Query: 385  EARVLAWIAGEDWKIKAFANGEDIYVTT--YAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            E R+LA ++G+   +K F   E   V +   ++      + V++  R   K +  A+ Y 
Sbjct: 1127 ELRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYG 1186

Query: 443  GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                                                              A    +    
Sbjct: 1187 --------------------------------------------AGRERLAACLGVTLRE 1202

Query: 503  CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                 +++  K++ +    +                            + R  +  ++  
Sbjct: 1203 AARFGESFLQKYKKIKDFTQA--------------------------TIARCHQTGYVES 1236

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620
               RR     ++     L    +Q  R+          +VQ  + D+    M        
Sbjct: 1237 VMGRRRPLPRIRARDQKLR---AQAERQA------VNFVVQGSAADLCKMAMIRIFAAVA 1287

Query: 621  -----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKAEGYE 669
                    +V  +HDE++ E  D+       L    M              +PLK     
Sbjct: 1288 TSPTLTARLVAQIHDELLFEVEDSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSLST 1347

Query: 670  AKRY 673
             + +
Sbjct: 1348 GRSW 1351


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 101/383 (26%), Gaps = 88/383 (22%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 727  GKNGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 763

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   IA+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 764  ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPH 820

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              + V K +                           G D         +  +     +  
Sbjct: 821  IREAVEKREV------------------LLEWHPQPGEDKPPVPLLKDAFGSERRKAKML 862

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  +         A   K+         + W  + + VL   +   +    +      + 
Sbjct: 863  NFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLL- 921

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                      R   +  V    +          R          
Sbjct: 922  -------------------------GRARSFPSVHHATASQRGHI---ERAAI------N 947

Query: 600  NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
              VQ  + D+    M          + G+ ++L VHDE++ E P         +    M 
Sbjct: 948  TPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECME 1007

Query: 653  KNPSW--AKGLPLKAEGYEAKRY 673
            K         + L  +   A+ +
Sbjct: 1008 KPFDGKNILSVDLAVDAKCAQNW 1030



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 66/302 (21%)

Query: 2   SKL--FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS- 51
             L    D E         V      +   I   +        + +    +W D  +   
Sbjct: 271 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 326

Query: 52  -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP--- 106
             +  +   +  D ++  V HN  F+  + +     D+    +   T  +AR        
Sbjct: 327 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 383

Query: 107 ---SSLKNA--------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
               SL+                   L   +   K   GK  + +               
Sbjct: 384 VGGYSLEALTRDSKVMSGAHMSNGEEL-IGKVSMKTIFGKKKLKKDGTEGKI-ITIAPVE 441

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLI-PLSDGERDLW-------------------L 189
               +  + +  Y   D  +T +L++ +   L D E  L                     
Sbjct: 442 VLQREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGE 501

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMY 244
           L   +   G  +D   + K++++   E +               D    +      LR  
Sbjct: 502 LLVQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQL 561

Query: 245 LF 246
           LF
Sbjct: 562 LF 563


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 83/276 (30%), Gaps = 42/276 (15%)

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L          + ILN    +      +  L + +    G++    Q    ++TG
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQT-LTQTG 59

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377
           R S      QN+P                                +R   +    G KL 
Sbjct: 60  RLSSVDPNLQNIP------------------------IRMEEGRKIRQAFVPQQEGWKLF 95

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436
            +D + IE RVLA I+G++   +AF  G+DI+ +T    F     + V+   R   K + 
Sbjct: 96  ASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVN 155

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L++ + +        F+ +   +     +  +  E    +
Sbjct: 156 FGVVYG-----ISDYGLSQNLNITRKAAQEFIDRYFDKYPGVKQFMEDIVKEAKENGYVE 210

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
            L            R     +     +L        
Sbjct: 211 TLFHR---------RRYLPDIHNRNFNLRSFAERTA 237


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/802 (10%), Positives = 174/802 (21%), Gaps = 184/802 (22%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
              D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 274  ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 329

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
              +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 330  LMEFAPFFEDPSIKKVWHNYSFDNHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 386

Query: 107  SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
             SL+                    +   K   G+  + +       +   +       + 
Sbjct: 387  YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSEGK-TISIEPVEKLQRED 445

Query: 156  WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195
             +L+  Y   D  +T +L++ L    +  E                + W     L   + 
Sbjct: 446  RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKME 505

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246
              G  +D   + ++++    ERK   +   K       D    +      +R   F    
Sbjct: 506  TEGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIK 565

Query: 247  --LITGIDLV------------------DMSEG------TLKSILSHSNITQLAKDLILN 280
                 G                        S+       T+   L               
Sbjct: 566  NRNKPGETWPQSKTFKVPNDESIATEGKKTSKSRTIKLFTIVEDLKLFTTEGKKTTKTGW 625

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                       L +L+  + +D          G       S      Q++          
Sbjct: 626  ----LKVRGDVLWSLAGKIPTD---HIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAY 678

Query: 341  TQTIQALNRGETIADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--- 392
                      E                 +   II   G + +      I   +       
Sbjct: 679  EAFGGGKKGREACHAIAALCEAFSIDKLISGFIIPLQGDR-ISCKEGRIHCSLNINTETG 737

Query: 393  ---AGEDWKIKAFANGEDIYVTTYAKA-----FNTPIDKVSKEQRAIGKVMEL-----AL 439
               A         A  +D Y    A            D    E R +  +        A 
Sbjct: 738  RLSARTPNLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAF 797

Query: 440  GYQGGAKVFKTMASHCGLDLQQFSQNVKST-------------------STFEDWEQAES 480
               G       M  +  +      + V                             +  +
Sbjct: 798  KAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLN 857

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
              +         +    +         K W    + V    K          +    +  
Sbjct: 858  FSIAYGKTAVGLSQDWNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCEVYTLL-- 915

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                                     R   + ++             + R           
Sbjct: 916  ------------------------GRSRQFPNM---THAGPGQKGHVERAAINAPG---- 944

Query: 601  IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTK 653
              Q  + D+    M    +       G+ ++L VHDE++ E P        ++    M+K
Sbjct: 945  --QGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKSIVVECMSK 1002

Query: 654  NP--SWAKGLPLKAEGYEAKRY 673
                +    + L  +   AK +
Sbjct: 1003 PFYGTNILKVDLAVDAKYAKSW 1024


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/528 (14%), Positives = 143/528 (27%), Gaps = 130/528 (24%)

Query: 169  ATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                L++ L+P             E +   L   +   G   D      L +    E   
Sbjct: 648  VNIRLYEWLLPLATRLSSEKSVSLELESTELLARLEATGIAFDRQAGHDLLQRTKSEMSS 707

Query: 220  LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDMSEGTLKSILSHSNI 270
            L+ +  +L      +      +   LF+  GI                 T K +L     
Sbjct: 708  LEAEGRRLASMPF-NFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKEVLQRLAP 766

Query: 271  TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  +IL     + +    L  L  A  S+GR+     F   + TGR        QN+
Sbjct: 767  KHRIAAIILKWRKLNTALSSSLQNLLRACRSNGRIH--ASFTTFTGTGRVQSVHPNVQNV 824

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
             +    +                       S  VRS  +A  G  LV AD + +E RVLA
Sbjct: 825  QKDALID-----------------------SLSVRSLFVAPPGFVLVSADYSQLELRVLA 861

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
             ++ ++   K F NG D + T   +                                   
Sbjct: 862  GLSKDEGLCKLFRNGGDFFQTVTDRWN--------------------------------- 888

Query: 451  MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
              ++  +D+    Q V          +   + +           +        + + +++
Sbjct: 889  --ANTSIDVPLDRQKV----------KQLCYAIIYGMGAITLGERIGTTKQNAQHLIESF 936

Query: 511  RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
              +   V        E           +  RR       V++                  
Sbjct: 937  FKEFPKVRSWMDATLESCRRDACAVTILGRRRPLKCGESVVQSD---------------- 980

Query: 571  SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVL 626
                          ++  R+         + +Q  + +I    +    K        IV+
Sbjct: 981  -------------RARAERQAI------NSTIQGSASEIFKSALLKLEKNLKDLDARIVM 1021

Query: 627  TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             VHDE++ E  +  + + V  + S M         +PL  +      +
Sbjct: 1022 QVHDEVIVELNEACFSTAVERIESAMLNALPEFP-VPLSVKISSGTNW 1068


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 117/420 (27%), Gaps = 116/420 (27%)

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
             L+  N     + L+ +R       I  +  L E V+ DGR+  T     A  TGR S 
Sbjct: 2   EELARYNPHPFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVA-ATGRLSS 58

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADL 381
                QN+P                           +    +R   +       L+ AD 
Sbjct: 59  IDPNLQNIP------------------------ARTVDGQKIREAFVPQKPYAALMTADY 94

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + IE R++A ++G++  + AFA+GED++ +  A  +    D+V+  QR+  K     L  
Sbjct: 95  SQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGL-- 152

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                         GL     +                                  +   
Sbjct: 153 ------------AYGLSAYGLAAQ------------------------------LNISQR 170

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             + +   +  +   V +    +      V                              
Sbjct: 171 DAKQLMDTYFERFGKVREYLNQIVATATRVGYTETM------------------------ 206

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619
               RR    +++     +     +               +Q  + D++   M       
Sbjct: 207 --RGRRRYLPELRSTNRNVADNARRA---------ALNAPIQGSAADLMKAAMLQVDADL 255

Query: 620 ----NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674
                   ++L VHDE+V E        + TL    MT        +PL+        +R
Sbjct: 256 RQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQAMTGVAK--LRVPLEVSVGIGPNWR 313


>gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2100

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/721 (12%), Positives = 169/721 (23%), Gaps = 224/721 (31%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-------------------LR-----DE 64
             I   A  W++ PV   +  +      +                       L        
Sbjct: 1470 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1529

Query: 65   TVMCVA---------HNSLFERILFKK-----------TLGIDIPSKRWICTSVLARTNG 104
             V  +           N   +  + K             L +       I     +    
Sbjct: 1530 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELID---NSYLML 1586

Query: 105  LP----SSLKN--ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
             P      L        L   E  +     +  + +       +      R  +    + 
Sbjct: 1587 SPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQ-TRRA 1645

Query: 159  FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208
                C R V  TR L   L  L             E  L  +   +   G  +D++  ++
Sbjct: 1646 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1705

Query: 209  LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLK 262
             + ++ ++ + L+++  +L             +   L+    + +            T K
Sbjct: 1706 ARNVLGKKLRHLEKEAYELAGMTFSLYTA-ADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1764

Query: 263  SILSHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRT 317
              L           +I      +      L ++         +    L G      ++ T
Sbjct: 1765 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQT-STAT 1823

Query: 318  GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
            GR S      Q                                               L+
Sbjct: 1824 GRLSMEEPNLQ-------------------------------------------ENWLLL 1840

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
             AD + IE R++A  + +    +  +    D++    AK    P   V  ++R   K + 
Sbjct: 1841 TADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLV 1900

Query: 437  LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
              + Y  G                                                A + 
Sbjct: 1901 YGILYGMG--------------------------------------------ANTLAKQL 1916

Query: 497  KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +      E   +++R+   GV      L E  AC  ++G   + +               
Sbjct: 1917 ECSLGEAEEKIRSFRSSFPGVASW---LHEAVACCCKKGYVKTLK--------------- 1958

Query: 557  DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                     R+   S +K   S       +             +I Q  + DI+   M N
Sbjct: 1959 --------GRKRFLSKIKFGTSKEKLKARRQ---------AVNSICQGSAADIIKIAMIN 2001

Query: 617  AT-----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652
                                     K    I+L VHDE+V E   +     G L    M 
Sbjct: 2002 IHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTME 2061

Query: 653  K 653
             
Sbjct: 2062 N 2062


>gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/492 (15%), Positives = 145/492 (29%), Gaps = 117/492 (23%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L    + E  L  L   ++  G  +D   + + + +I    K L++    L    I    
Sbjct: 7   LNSYWNIELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPIL-MW 65

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            +  +   L+    ++    +  + +S+L           L++     S      ++ L 
Sbjct: 66  SSKQVCEVLYDELKLEAPKGNRVSTESVLQTMADKHPFPGLVIEYRRLSKQMSTYIDGLE 125

Query: 297 E-------AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           +         +    +  T     A+ TGR S      Q LP++                
Sbjct: 126 KEFVSVPFRSTETKLIYSTWNQ-MATGTGRLSTAAPNMQTLPKRSLERL----------- 173

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A   ++L+  D   IE RV A  + +   I  F++G++  
Sbjct: 174 --------SNLDVDIRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSD 225

Query: 410 VTTYA--KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           + T          +  V+++ R   KV+ L L Y              G+ ++  +  +K
Sbjct: 226 IYTMIASMIHKVEVKDVTQKFRDEAKVITLGLCY--------------GMGVESMASKLK 271

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                                 +K +   + +GVLQ  K+    
Sbjct: 272 IPIL------------------------------TATQLKNSILNRFKGVLQFMKNTISS 301

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                           +   S RR           Y     S  
Sbjct: 302 ARK--------------------------THFVETLSGRRR----------YFKAKDSGG 325

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTP--- 640
                   +   +++Q  + D+L   M    K       +I+L +HDE+V + PD+    
Sbjct: 326 EGLAHIDRQAVNSVIQGSAADLLKCAMILLWKPLSELDSEIILQIHDELVIDCPDSDEVC 385

Query: 641 YFSVGTLCSLMT 652
              +  L  +M 
Sbjct: 386 EKVIALLNQVMC 397


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 84/276 (30%), Gaps = 42/276 (15%)

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318
           T   +L          + ILN    +      +  L + +    G++    Q    ++TG
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQT-LTQTG 59

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLV 377
           R S      QN+P                                +R   +    G KL 
Sbjct: 60  RLSSVDPNLQNIP------------------------IRMEEGRKIRQAFVPQQAGWKLF 95

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
            +D + IE RVLA I+G++   +AF  G+DI+ +T  + F     + V+   R   K + 
Sbjct: 96  ASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVN 155

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y               L++ + +        FE +   +     +  +  E    +
Sbjct: 156 FGVVYG-----ISDYGLSQNLNITRKAAQEFIDRYFEKYPGVKQFMEDIVKEAKENGYVE 210

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
            L            R     +     +L        
Sbjct: 211 TLFHR---------RRYLPDIHNRNFNLRSFAERTA 237


>gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818]
          Length = 830

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/571 (15%), Positives = 153/571 (26%), Gaps = 113/571 (19%)

Query: 91  KRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                T V A           + +                G   +      +     +  
Sbjct: 322 IAVRDTQVAAWLADPERAWDDMDDVFRLCQLRPVTR----GAGDLGDSSASASSQWLHKL 377

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
              +      LF      D     EL+ RL      E     L   +   G  ID + + 
Sbjct: 378 ASRHAAAFDHLFARLRACD---QAELYSRL------EAPAIWLLAEMQVHGIHIDTETLK 428

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDL----VDMSEG 259
           + +  I Q   +L+     L    +        LR YL+       GI            
Sbjct: 429 QQRVQIQQCLAELEARAEALVGFKLL-LTSPLQLREYLYDQLQLHVGIPNFPRTPKGKLS 487

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
           T +  L+         +L+L    ++      ++ +   V+  G L        A  +GR
Sbjct: 488 TGEDALTLIKDRHELPNLLLLHRRAARLLCTYIDGVLPHVTH-GMLHPEWLQTSA-ASGR 545

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            S      Q++P +E +                    L L     R+  +A  G   V  
Sbjct: 546 VSCQQPNIQSVPLRETALR------------------LDLLVVSPRAAYVAPGGCVYVSL 587

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439
           D   +E R+LA  + ++  I  F N E                  +    A     E   
Sbjct: 588 DWRQMELRLLAHFSEDEGLIALFQNQEAKA------------KANTPPSTANATSREE-- 633

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
              G +  FK +AS       +     +         +   +           +   ++ 
Sbjct: 634 --GGTSDPFKALASKWFCVPVEQVTGRQRDQ-----VKRCLYAFIYGSGALHLSKVLEVS 686

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
               + + +A+R +H  +  L   +                          + R K    
Sbjct: 687 VHEAKKLLQAFRRRHPRIQHLRDQV--------------------------LIRLKETGF 720

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
           +   S RR  + D   D S                      ++Q  + DI    M N  +
Sbjct: 721 VSCLSRRRRYFKDSANDHSQR---------------AAFNFLLQGSAADICKAAMINLRE 765

Query: 620 ------NGYDIVLTVHDEIVSETPDTPYFSV 644
                     +V  +HDEI+ E P+     V
Sbjct: 766 FLRAKQMRSFMVAQLHDEIILECPEKEAKEV 796


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 134/440 (30%), Gaps = 68/440 (15%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
            S   L    V    +  +I     A +     + D T  S +  DL+      T   + 
Sbjct: 176 TSKIKLSAETVVHIIDDKII----IAPNRSKAFICDVTNASDLVFDLI-----STTKMIC 226

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA 130
           ++   + +     L I+I   +       +               L     L+ +  G  
Sbjct: 227 YDVK-DTLHKLNALNINIVVDKVFDIKQASFLIDP----------LIRDRSLSSIVVG-- 273

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                               +     + F         AT           D +  L  L
Sbjct: 274 --EIDESNPAVVITAIWNAYDTQM--EKFKNDKILYKIAT-----------DFDFPLAPL 318

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT- 249
              +  RG +I+   +  +   I ++ ++L + I  +  G   +      L   LF+   
Sbjct: 319 LFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIA-GYNFNIASPAQLSDMLFIKLQ 377

Query: 250 ----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
               GI        T +  L+         +LI      +      ++ L + V  + RL
Sbjct: 378 LPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLVDKNYRL 437

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             T      S TGR S      QN+P                                +R
Sbjct: 438 HTTFNQDVVS-TGRLSSTHPNLQNIP------------------------IRSTLGKKIR 472

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           +  IA     LV AD +  E R+ A +AG++  I  F N  DI+  T +  +  P+D+V+
Sbjct: 473 NAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVT 532

Query: 426 KEQRAIGKVMELALGYQGGA 445
             QR   KV+   + Y    
Sbjct: 533 SNQRRNAKVINFGVLYGMSP 552


>gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa]
 gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/559 (15%), Positives = 144/559 (25%), Gaps = 94/559 (16%)

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------- 181
           K +  R    ++ +   +    N ++        C R V  TR L   L  L        
Sbjct: 128 KEVKKRLSSEAVAAANQNGRWKNQMRRVAH--NGCCRRVAQTRALCSGLWKLLTSEGLFE 185

Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              + E  L  +   +   G  +D++  L  + ++ +  + L++   KL           
Sbjct: 186 ALKNIEIPLVNVLADMELWGIGVDMEGCLNARTVLGKRLRYLEKKAYKLAGMTFSLYTA- 244

Query: 239 YALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
             +   L+    + +            T K  L           +I      +      L
Sbjct: 245 ADIANILYRHLKLPIPEGHNKGKKHPSTDKHCLDLLRHEHPIVPVIREHRTLAKLLNSTL 304

Query: 293 NTL-----SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            ++         +    L G      ++ TGR S      Q                +  
Sbjct: 305 GSICSLARLSMETQKYTLHGHWLQT-STATGRLSIEEPNLQ--------CVEHAVDFEMS 355

Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
           +  E             R   +   +   L+ AD + IE R++A  + +   IK      
Sbjct: 356 SDKEGDDAEPEHYKINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDTALIKLLTKPH 415

Query: 407 -DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D++    A+    P   VS  +R   K M   + Y  GA           LD       
Sbjct: 416 GDVFNLIAARWTGKPEASVSSVERDQTKRMVYGILYGMGANTLAE-----QLDCSSDEAA 470

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
            K  S    +    S          E    + + G    L K  +               
Sbjct: 471 EKIKSFKSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKFGNS------------ 518

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                  Q     S  + +    + +        IV    R                   
Sbjct: 519 -EEKSKAQRQAVNSICQGSAADLIKIAMINIHSLIVDGVGR------------------- 558

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                  +  K                 M    K    I+L VHDE+V E   +      
Sbjct: 559 -PESSSLHANKFH---------------ML---KGQCRILLQVHDELVLEVDPSLINEAA 599

Query: 646 TLCSL-MTKNPSWAKGLPL 663
            L  + M    S    +PL
Sbjct: 600 VLLQMSMEDAASLL--VPL 616


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 19/189 (10%)

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             L     + +  +WR  +  +   W D+       + +      R       +      
Sbjct: 1   MGLSEEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQRIQTEVRG------ICFFYKS 54

Query: 556 RDVHIVLPSSRRLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAIS 606
             + I LPS R L Y   + G+  Y           +T +  R  +YG K  ENIVQA+S
Sbjct: 55  GMLFIKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVS 114

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666
           RDILC  MK        IV  VHDE++ E       +V  +C  M ++P W   + L+A+
Sbjct: 115 RDILCYAMKTL--RHCFIVGHVHDELIIECSPDVDTNV--ICKQMGRSPDWMPDILLRAD 170

Query: 667 GYEAKRYRK 675
           GYE   Y+K
Sbjct: 171 GYETNFYKK 179


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
            polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 95/365 (26%), Gaps = 88/365 (24%)

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 742  NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 781

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T    
Sbjct: 782  ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 835

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +    + V   Q                           G D         +  +     
Sbjct: 836  YPHVREAVENGQV------------------ILEWHPEPGEDKPPVPLLKDAFGSERRKA 877

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            +  +  +         +   K+     +     W    Q V +  +   +          
Sbjct: 878  KMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLT 937

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             +                           R   +   K          + + R       
Sbjct: 938  LL--------------------------GRSRRFPASKS-----RAQRNHIQRAAI---- 962

Query: 597  LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                 VQ  + D+    M          K G+ ++L +HDE++ E P         +   
Sbjct: 963  --NTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVD 1020

Query: 650  LMTKN 654
             M+K 
Sbjct: 1021 CMSKP 1025



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 62/297 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
             D E        +V      +   +   +        + +    +W D        + +
Sbjct: 292 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 347

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSL 109
           +   Y  D  +  V HN  F+  + +   GI+I       T  +AR            SL
Sbjct: 348 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 405

Query: 110 KNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +        L             +   K   GK  + +                   +  
Sbjct: 406 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIP-PVEELQREDR 464

Query: 157 QLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW----LLDQTI 194
           + +  Y   D  +T +L++ +                    + D   + W     L   +
Sbjct: 465 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 524

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
              G  +D + + +++++   E++               D    +      LR   F
Sbjct: 525 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 581


>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2382

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 91/750 (12%), Positives = 180/750 (24%), Gaps = 170/750 (22%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAM---------------------PSDLLQYLRDETVMC 68
            +   A  W           ++ +                       + +   L   +   
Sbjct: 1689 LIGLAVCWGSRDAYYISLQQEQSAGSFSSSLAPPPLDDDLGLRERLAQVKTCLGQPS--- 1745

Query: 69   VAHN-----SLFER----ILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLAL 116
             AH+       ++      +   + GI +         V            +L N     
Sbjct: 1746 -AHHGDRVLIAYDIIRTYKVLVLSCGISLEG-SCEDPKVACWLLDPGSEERTLPNMVTVY 1803

Query: 117  NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
               E       G +             P        V  + + G                
Sbjct: 1804 CPEELPLLGGLGSSH---------THCPRVRASTASVLTYAVMGRLTGL-----LREDGV 1849

Query: 177  LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            L      E    +    +   G         + + ++  +   L+        G   S  
Sbjct: 1850 LDHFRSVEMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAY-RLAGHSFSLT 1908

Query: 237  QTYALRMYLFLITGID-----LVDMSEGTL--------------------KSILSHSNIT 271
                +   LFL   +          S+ TL                    K +L      
Sbjct: 1909 SVDDVAQVLFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRPL 1968

Query: 272  QLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRT--------- 317
                 LIL     + +    +  L             R+    Q + A+           
Sbjct: 1969 HPLPGLILEWRRITNALTKVVFPLQREKKHHSALSMDRIYPIAQTHTATGNPQTPEPCET 2028

Query: 318  ------------GRWSGCVFQPQNLPR-------------QERSEEILTQTIQALNRGET 352
                        GR S      QN+P+                 +       +   R   
Sbjct: 2029 CNMRWLSLVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSA 2088

Query: 353  IADPLGLASDC-------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            +       S+        +R   +  +G  ++ AD + +E RVLA ++ +   ++    G
Sbjct: 2089 VPSGAAAGSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGG 2148

Query: 406  EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
             D++    A+  +   D V+   R   K +   + Y  GAK          + +++    
Sbjct: 2149 ADVFRCIAAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGE-----QMGVEENDAA 2203

Query: 466  VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                +    +    +          +      L+G          R    G+      + 
Sbjct: 2204 CYIETFKSRYRGINAFLKETVKNCGKNGYVQTLMGR---------RRYLPGITNTNAHVK 2254

Query: 526  EGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                   V      SA  +  +  + +++  R  +   P    L +            A 
Sbjct: 2255 AHAERQAVNTTVQGSAADIVKLATVNIQKRLRQTYPAAP----LSHQHPAPVMGRFCGAG 2310

Query: 585  SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            S   R  T   +                        GY  VL +HDE++ ET D     V
Sbjct: 2311 SSRRRAVTRHPRG-----------------------GYF-VLQLHDELIYETTDEDVIQV 2346

Query: 645  GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
              +    M         + ++A+      +
Sbjct: 2347 AQIVKREMETAVKLY--VKMRAKVKVGPSW 2374


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 95/365 (26%), Gaps = 88/365 (24%)

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 741  NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 780

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T    
Sbjct: 781  ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 834

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +    + V   Q                           G D         +  +     
Sbjct: 835  YPHVREAVENGQV------------------ILEWHPEPGEDKPPVPLLKDAFGSERRKA 876

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            +  +  +         +   K+     +     W    Q V +  +   +          
Sbjct: 877  KMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLT 936

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             +                           R   +   K          + + R       
Sbjct: 937  LL--------------------------GRSRRFPASKS-----RAQRNHIQRAAI---- 961

Query: 597  LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                 VQ  + D+    M          K G+ ++L +HDE++ E P         +   
Sbjct: 962  --NTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVD 1019

Query: 650  LMTKN 654
             M+K 
Sbjct: 1020 CMSKP 1024



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 62/297 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
             D E        +V      +   +   +        + +    +W D        + +
Sbjct: 291 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 346

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSL 109
           +   Y  D  +  V HN  F+  + +   GI+I       T  +AR            SL
Sbjct: 347 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 404

Query: 110 KNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +        L             +   K   GK  + +                   +  
Sbjct: 405 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIP-PVEELQREDR 463

Query: 157 QLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW----LLDQTI 194
           + +  Y   D  +T +L++ +                    + D   + W     L   +
Sbjct: 464 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 523

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
              G  +D + + +++++   E++               D    +      LR   F
Sbjct: 524 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 580


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 96/365 (26%), Gaps = 88/365 (24%)

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 739  NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 778

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T    
Sbjct: 779  ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 832

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +    + V   Q                           G D         +  +     
Sbjct: 833  YPHIREAVENGQV------------------ILEWHPQPGEDKPPVPLLKDAFGSERRKA 874

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            +  +  +         +   K+     +   K W    Q V +  +   +          
Sbjct: 875  KMLNFSIAYGKTAIGLSRDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRT 934

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             +                           R   +   K          + + R       
Sbjct: 935  LL--------------------------GRSRRFPRYKS-----RAQKNHIQRAAI---- 959

Query: 597  LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                 VQ  + D+    M          K G+ ++L +HDE++ E P         +   
Sbjct: 960  --NTPVQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVD 1017

Query: 650  LMTKN 654
             M+K 
Sbjct: 1018 CMSKP 1022


>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
 gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
          Length = 2006

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 91/666 (13%), Positives = 181/666 (27%), Gaps = 122/666 (18%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVA 70
            ++   +   I+  ++   D     W+                   +L   +  + +  V 
Sbjct: 1426 LFQVDDSTFISCVSFCLADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVM 1485

Query: 71   HNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTK 124
            H+   +  + +K       I +  +      V           +  N C           
Sbjct: 1486 HDGKEQLKMLRKAIPQLQKISVKLE---DAKVANWLLQPDKTVNFLNMCQTFAPECTGLA 1542

Query: 125  MEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
               G  +   +     S    P   T         +     +            L    D
Sbjct: 1543 NLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILKGQIENLGRI--GEGDLLKFFHD 1600

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  + L    +   G+      + +L + +    KKL+  I +   G   +   + A+ 
Sbjct: 1601 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQH-GSRFNLGSSQAVA 1659

Query: 243  MYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              L    G+         T + +L   N       LIL     S      +  L E   +
Sbjct: 1660 KVL----GLHRKAKGRVTTSRQVLEKLNSP--ISHLILGYRKLSCLLAKSIQPLMECCQA 1713

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            D R+ G    Y A  TGR S      QN+ ++                   I       +
Sbjct: 1714 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FCIQVGADAVN 1753

Query: 362  DCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
               RS  +     + L+ AD   +E R+LA ++ +   ++   + +D+++   A      
Sbjct: 1754 ISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIK 1813

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
              +V+ + R   K +   + Y  G +          L+  +    + S    E ++    
Sbjct: 1814 ESEVTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARILSDQFHEAYKGIRD 1868

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
            +   + +        + + G    L           +    + L +     V      SA
Sbjct: 1869 YTRRVVNFARGKGFVETITGRRRYLEM---------INSDMEHLKKAERQAVNSTIQGSA 1919

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
              +A    L M ++       L                                      
Sbjct: 1920 ADIAKNAILKMEKNIERYREKLALG----------------------------------- 1944

Query: 601  IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK 659
                                  D+V+ +HDE++ E P      +  + S+ M        
Sbjct: 1945 ------------------DKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--L 1984

Query: 660  GLPLKA 665
             +PLK 
Sbjct: 1985 SVPLKV 1990


>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
 gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
          Length = 711

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 89/320 (27%), Gaps = 42/320 (13%)

Query: 83  TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKG 138
            L I           V               +     L  +        GK  +      
Sbjct: 423 YLDIPYDG-PVFDAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLLGKQSLG-DALW 480

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDR 197
             D     C       A +      +R  +    +LF       + E  L     ++   
Sbjct: 481 MKDPKAVSCACYMGYVAMKAAAPLTERLKQTGMYQLF------IEIEMPLIYSLSSMEQA 534

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G +++ + + +    +  +   L+++I + T     +      L   LF    +     +
Sbjct: 535 GVKVEREELKEYGSRLKVQIDVLEQEIYRDTGKEF-NINSPKQLGEILFGDMALPGGKKT 593

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
           +    T   +L            IL+    +         L+  + SDGR+ G       
Sbjct: 594 KTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLYSTYAEGLAAFIGSDGRIHGKFNQT-I 652

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      QN+P                                +R   +   G 
Sbjct: 653 TATGRISSTEPNLQNIP------------------------VRMELGREIRKVFVPREGS 688

Query: 375 KLVVADLAGIEARVLAWIAG 394
             V AD + IE R+LA ++G
Sbjct: 689 VFVDADYSQIELRILAHMSG 708


>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 97/739 (13%), Positives = 183/739 (24%), Gaps = 225/739 (30%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------ 55
            S+   D+     + +     +       I   A  W++ PV   +  +   M        
Sbjct: 1406 SEFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIE 1459

Query: 56   ----------DLLQYLRDETVMCVAHNSLFERILFKK-----------TLGIDI-PSKRW 93
                       +++ +R  +V  +  N  F+    K             L   +  +   
Sbjct: 1460 MWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEV 1519

Query: 94   ICTSVLARTNGLPSS----LK--NACLALNFSEHLTKMEEGKAL-IARFCKGSIDSPPYD 146
            +           P S    L        L   E    +   + L   R    +  +   D
Sbjct: 1520 LDNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAANRD 1576

Query: 147  CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTIND 196
                N +         C R    TR L   L  L             E  L  +   +  
Sbjct: 1577 GRWRNQMHKAAH--NGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMEL 1634

Query: 197  RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             G   D+D  L+ + +I ++ K+L+++  KL  G   S   T  +   L+    + +   
Sbjct: 1635 WGIGADMDACLRARHIIIRKLKELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKG 1693

Query: 257  ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                     T K  L H         +I      +      LN    ++ S  +L    Q
Sbjct: 1694 CGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKL----LNGTLGSICSRAQLCSKSQ 1749

Query: 311  FY--------GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
             Y         ++ TGR S      Q                                  
Sbjct: 1750 RYIIQGNWLQTSTATGRLSMEEPNLQ---------------------------------- 1775

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPI 421
                         LV AD + IE R++A  + +   I+  +  + D++    ++      
Sbjct: 1776 ---------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAE 1826

Query: 422  DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
              +  ++R   K     +                G+                        
Sbjct: 1827 SLICSKERETTKRFIYGIL--------------YGMG----------------------- 1849

Query: 482  HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                       A + +          ++++    GV     +              +   
Sbjct: 1850 -------ANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLM--- 1899

Query: 542  RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                    RR   S +    S      ++  R+         +I
Sbjct: 1900 -----------------------GRRRFLSKITAGNSKEK---AKAQRQA------VNSI 1927

Query: 602  VQAISRDILCEGMKNAT--------------------------KNGYDIVLTVHDEIVSE 635
             Q  + DI+   M                              +    ++L VHDE+V E
Sbjct: 1928 CQGSAADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLE 1987

Query: 636  TPD-TPYFSVGTLCSLMTK 653
                    +V  L ++M  
Sbjct: 1988 VDPCMVAEAVRLLQTVMEN 2006


>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
            Group]
          Length = 2065

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 97/739 (13%), Positives = 183/739 (24%), Gaps = 225/739 (30%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------ 55
            S+   D+     + +     +       I   A  W++ PV   +  +   M        
Sbjct: 1427 SEFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIE 1480

Query: 56   ----------DLLQYLRDETVMCVAHNSLFERILFKK-----------TLGIDI-PSKRW 93
                       +++ +R  +V  +  N  F+    K             L   +  +   
Sbjct: 1481 MWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEV 1540

Query: 94   ICTSVLARTNGLPSS----LK--NACLALNFSEHLTKMEEGKAL-IARFCKGSIDSPPYD 146
            +           P S    L        L   E    +   + L   R    +  +   D
Sbjct: 1541 LDNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAANRD 1597

Query: 147  CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTIND 196
                N +         C R    TR L   L  L             E  L  +   +  
Sbjct: 1598 GRWRNQMHKAAH--NGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMEL 1655

Query: 197  RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             G   D+D  L+ + +I ++ K+L+++  KL  G   S   T  +   L+    + +   
Sbjct: 1656 WGIGADMDACLRARHIIIRKLKELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKG 1714

Query: 257  ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                     T K  L H         +I      +      LN    ++ S  +L    Q
Sbjct: 1715 CGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKL----LNGTLGSICSRAQLCSKSQ 1770

Query: 311  FY--------GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
             Y         ++ TGR S      Q                                  
Sbjct: 1771 RYIIQGNWLQTSTATGRLSMEEPNLQ---------------------------------- 1796

Query: 363  CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPI 421
                         LV AD + IE R++A  + +   I+  +  + D++    ++      
Sbjct: 1797 ---------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAE 1847

Query: 422  DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
              +  ++R   K     +                G+                        
Sbjct: 1848 SLICSKERETTKRFIYGIL--------------YGMG----------------------- 1870

Query: 482  HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                       A + +          ++++    GV     +              +   
Sbjct: 1871 -------ANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLM--- 1920

Query: 542  RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                    RR   S +    S      ++  R+         +I
Sbjct: 1921 -----------------------GRRRFLSKITAGNSKEK---AKAQRQA------VNSI 1948

Query: 602  VQAISRDILCEGMKNAT--------------------------KNGYDIVLTVHDEIVSE 635
             Q  + DI+   M                              +    ++L VHDE+V E
Sbjct: 1949 CQGSAADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLE 2008

Query: 636  TPD-TPYFSVGTLCSLMTK 653
                    +V  L ++M  
Sbjct: 2009 VDPCMVAEAVRLLQTVMEN 2027


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/498 (12%), Positives = 134/498 (26%), Gaps = 106/498 (21%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  + +    +   G   D     + +    +  ++L+ +  K     I +      +
Sbjct: 239 DVEAKVAVALGVLQHHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDI-NLASAQQV 297

Query: 242 RMYLFLITGIDLV-----DMSEGT-----LKSILSHSNITQLAKDLILNRLASS-GSAIL 290
              L+    +          S+ +     ++ + S       A+ ++ +R A    +   
Sbjct: 298 ADVLYNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERAMCD 357

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  S  +++DGR R   Q+    + TGR S      Q + R                 
Sbjct: 358 NYDK-SAVIAADGRARIHTQWNNTKTATGRLSSSHPNIQQVGRGT--------------- 401

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DI 408
                         +R+C +A  G+  + AD + IE RVLA ++G+D  I      + D+
Sbjct: 402 --------------MRNCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLRQAKGDV 447

Query: 409 YVTTYAKAFNTPIDKVS-KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           +V  +      P+D  + K  R I K     + Y               L + +      
Sbjct: 448 FVAIWNAGKGLPLDAPAEKSTRDIAKRTAYGIVYGQ-----HATGLAEKLGVPKSEAQGY 502

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             +    + +       +  +  +             L           +          
Sbjct: 503 IAAFHRAFPKVNQWITRVLQRAEQTGAVT--------LPMSGRHRALPKIHSKVFSERSE 554

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                                               + TA  + 
Sbjct: 555 AQRQAVNTIIQGT-----------------------------------AADMMKTAMLRW 579

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY-FSVGT 646
                  G+   ++                 K    +V  +HDE++ E  +         
Sbjct: 580 T-SAVGAGRFANDVAPGS-----------VNKKRVTLVAQIHDELLFEVDEDYVPECARA 627

Query: 647 LCSLMTKNPSWAKGLPLK 664
           + ++M      A   P+K
Sbjct: 628 VKNVMENAIKLAVPTPIK 645


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 99/324 (30%), Gaps = 88/324 (27%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   IA+ G ++V AD + IE R++A I+G+   ++AF+ GEDI+  T A+ 
Sbjct: 2   RTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEV 61

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           F     +V+ +QR I KV+                    G+                   
Sbjct: 62  FGVTPLEVNADQRRIAKVIN--------------FGLIYGMS------------------ 89

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                           A    +   A +L    +  ++ GV Q  ++             
Sbjct: 90  ------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMENTRASAKEKGYVET 137

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                                        RRL   ++ G       A     R       
Sbjct: 138 VF--------------------------GRRLWLPEINGGNGPRRQAA---ERAAINAP- 167

Query: 597 LTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649
                +Q  + D++   M          K    +++ VHDE+V E PD     V   L  
Sbjct: 168 -----MQGTAADLIKLSMIAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPE 222

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M         +PL AE      +
Sbjct: 223 MMCGVAK--LKVPLVAEVGAGANW 244


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 92/375 (24%), Gaps = 100/375 (26%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
             GR+  +     A  TGR S      QN+P                             
Sbjct: 3   KTGRVHTSYNQAVA-VTGRLSSNNPNLQNIP------------------------VRTER 37

Query: 361 SDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +R   +       L+ AD + IE R++A I+G+    +AF  G+DI+  T AK +N 
Sbjct: 38  GREIRKAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNI 97

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
               V+KE R   K +   + Y  G            L + +        +  + +   +
Sbjct: 98  EEADVTKEMRYKAKSVNFGIIYGQG-----AFGLAENLKITRSEAKEIIDNYKKQFPNIQ 152

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +         +    + L G    L         + +      +               
Sbjct: 153 QYMDAQMKFAQQNGYVETLWGRKRWL---------KDINSGNFTVRGYAERNAINMPIQG 203

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                      +L    +  +       +               
Sbjct: 204 TAADMI---------------------KLAMIKIHREFKDRGFKSK-------------- 228

Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWA 658
                         M           L VHDE+V +        +   +   M       
Sbjct: 229 --------------MI----------LQVHDELVFDAWKDEVDIIKPIIIECMQSALPLP 264

Query: 659 KGLPLKAEGYEAKRY 673
             +P  AE      +
Sbjct: 265 NDVPANAEIGVGVNW 279


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/790 (10%), Positives = 172/790 (21%), Gaps = 165/790 (20%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
              D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 284  ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 339

Query: 54   PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
              +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 340  LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 396

Query: 107  SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
             SL+                    +   K   G+  + +       +   +       + 
Sbjct: 397  YSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSEGK-TISIEPVEKLQRED 455

Query: 156  WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195
             +L+  Y   D  +T +L++ L    +  E                + W     L   + 
Sbjct: 456  RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKME 515

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246
              G  +D   + ++++    ER+   +   K       D    +      +R   F    
Sbjct: 516  TEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIE 575

Query: 247  --LITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-------- 294
                 G         +      ++           I          I             
Sbjct: 576  NRNKRGETWPQSKTFKVPNDEGITTEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSG 635

Query: 295  --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
              L          R      G       S      Q++                    E 
Sbjct: 636  DVLRSLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREA 695

Query: 353  IADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWI------AGEDWKIKA 401
                            +   I+   G + +      I   +          A        
Sbjct: 696  CHAIAALCEVFSIDKLISGFIVPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPNLQNQ 754

Query: 402  FANGEDIYVTTYAKA-----FNTPIDKVSKEQRAIGKVMEL-----ALGYQGGAKVFKTM 451
             A  +D Y    A            D    E R +  +        A    G       M
Sbjct: 755  PALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 814

Query: 452  ASHCGLDLQQFSQNVKST---STFEDWEQAESHHLWMQDQYPE-------FAVKDKLIG- 500
              +  +      + V         ++             +  +        A     +G 
Sbjct: 815  NMYQHVRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGL 874

Query: 501  --------TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                           K W    + V    K          +    +              
Sbjct: 875  SWDWKVEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLL-------------- 920

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                         R   + ++             + R            VQ  + D+   
Sbjct: 921  ------------GRSRQFPNM---THAGPGQKGHVERAAINAP------VQGSAADVAMC 959

Query: 613  GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPL 663
             M    +       G+ ++L VHDE++ E P        T+    M+K    +    + L
Sbjct: 960  AMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDL 1019

Query: 664  KAEGYEAKRY 673
              +   AK +
Sbjct: 1020 AVDAKYAKSW 1029


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
            DNA-directed DNA polymerase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
          Length = 1034

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/386 (13%), Positives = 105/386 (27%), Gaps = 90/386 (23%)

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 726  NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 765

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   IAS G  L+VAD   +E R+LA +A  +   +AF  G D +  T    
Sbjct: 766  ------KIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNM 819

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +    + V   +                           G +         + ++     
Sbjct: 820  YPHIREAVENGEV------------------LLEWHPQPGQEKPPVPLLKDAFASERRKA 861

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            +  +  +         +   K+     +     W    Q V +  +   +          
Sbjct: 862  KMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLT 921

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             +                           R   + + +          + + R       
Sbjct: 922  LL--------------------------GRARKFPEYRS-----RAQKNHIERAAI---- 946

Query: 597  LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                 VQ  + D+    M          + G+ ++L VHDE++ E P     +   +  +
Sbjct: 947  --NTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVN 1004

Query: 650  LMTKNP--SWAKGLPLKAEGYEAKRY 673
             M++         + L  +   A+ +
Sbjct: 1005 CMSEPFNGKNILSVDLSVDAKCAQNW 1030



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 66/299 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
             D E  S   +         +   +   +        + D    +W D        + +
Sbjct: 270 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 325

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
           +   +  D ++  V HN  F+  + +      I    +   T  +AR            S
Sbjct: 326 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 382

Query: 109 LKNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           L+        L           F +   K   GK  + +              +   ++ 
Sbjct: 383 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIP-PVKELQMED 441

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQT 193
            + +  Y   D  +T +L++ +                      D  ++ W     L   
Sbjct: 442 REAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAK 501

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD------EDIVKLTDGIIRSSRQTYALRMYLF 246
           +   G  +D D + +  E++A+  +++              D    +      LR   F
Sbjct: 502 MESEGMLVDRDYLAQ-IEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFF 559


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/654 (13%), Positives = 178/654 (27%), Gaps = 115/654 (17%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVAHNSLFERIL 79
            I+  ++   D     W+                   +L   +  + +  V H+   +  +
Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546

Query: 80   FKKTLG-IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEG--KALIAR 134
             +K +  +   S +     V           +  N C              G  +   + 
Sbjct: 1547 LRKAIPQLKRISAKLEDAKVANWLLQPDKTVNFLNMCQTFAPECTGLANLCGSGRGYSSY 1606

Query: 135  FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                S    P   T         +     +            L    D E  + L    +
Sbjct: 1607 GLDTSSAILPRIRTAIESCVTLHILQGQTENLSRI--GNGDLLKFFHDIEMPIQLTLCQM 1664

Query: 195  NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
               G+      + +L + +    KK++  I +   G   +   + A+   L    G+   
Sbjct: 1665 ELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQH-GSRFNLGSSQAVAKVL----GLHRK 1719

Query: 255  DMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                  T + +L   N       LIL     SG     +  L E   +D R+ G    Y 
Sbjct: 1720 AKGRVTTSRQVLEKLNSP--ISHLILGYRKLSGLLAKSIQPLMECCQAD-RIHGQSITYT 1776

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372
            A  TGR S      QN+ ++                  +I     +     RS  +    
Sbjct: 1777 A--TGRISMTEPNLQNVAKE-----------------FSIQVGSDVVHISCRSPFMPTDE 1817

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
             + L+ AD   +E R+LA ++ +   ++   + +D+++   A        +V+++ R   
Sbjct: 1818 SRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNST 1877

Query: 433  KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            K +   + Y  G +          L+  +    + S    + ++    +   + +     
Sbjct: 1878 KQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSK 1932

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
               + + G          R   + +    + L               +            
Sbjct: 1933 GFVETITGR---------RRYLENINSDVEHLKNQAERQAVNSTIQGS------------ 1971

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                                        N           Y  KL               
Sbjct: 1972 ----------------------AADIAKNAILKMEKNIERYREKLA-------------- 1995

Query: 613  GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                   N  D+V+ +HDE++ E P      +  + SL M         +PLK 
Sbjct: 1996 ----LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK--LSVPLKV 2043


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/386 (13%), Positives = 105/386 (27%), Gaps = 90/386 (23%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 691 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 730

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   IAS G  L+VAD   +E R+LA +A  +   +AF  G D +  T    
Sbjct: 731 ------KIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNM 784

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +    + V   +                           G +         + ++     
Sbjct: 785 YPHIREAVENGEV------------------LLEWHPQPGQEKPPVPLLKDAFASERRKA 826

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  +  +         +   K+     +     W    Q V +  +   +          
Sbjct: 827 KMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLT 886

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +                           R   + + +          + + R       
Sbjct: 887 LL--------------------------GRARKFPEYRS-----RAQKNHIERAAI---- 911

Query: 597 LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                VQ  + D+    M          + G+ ++L VHDE++ E P     +   +  +
Sbjct: 912 --NTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVN 969

Query: 650 LMTKNP--SWAKGLPLKAEGYEAKRY 673
            M++         + L  +   A+ +
Sbjct: 970 CMSEPFNGKNILSVDLSVDAKCAQNW 995



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 66/299 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
             D E  S   +         +   +   +        + D    +W D        + +
Sbjct: 235 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 290

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
           +   +  D ++  V HN  F+  + +      I    +   T  +AR            S
Sbjct: 291 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 347

Query: 109 LKNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           L+        L           F +   K   GK  + +              +   ++ 
Sbjct: 348 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIP-PVKELQMED 406

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQT 193
            + +  Y   D  +T +L++ +                      D  ++ W     L   
Sbjct: 407 REAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAK 466

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD------EDIVKLTDGIIRSSRQTYALRMYLF 246
           +   G  +D D + +  E++A+  +++              D    +      LR   F
Sbjct: 467 MESEGMLVDRDYLAQ-IEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFF 524


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/654 (13%), Positives = 178/654 (27%), Gaps = 115/654 (17%)

Query: 30   ITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVAHNSLFERIL 79
            I+  ++   D     W+                   +L   +  + +  V H+   +  +
Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546

Query: 80   FKKTLG-IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEG--KALIAR 134
             +K +  +   S +     V           +  N C              G  +   + 
Sbjct: 1547 LRKAIPQLKRISAKLEDAKVANWLLQPDKTVNFLNMCQTFAPECTGLANLCGSGRGYSSY 1606

Query: 135  FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                S    P   T         +     +            L    D E  + L    +
Sbjct: 1607 GLDTSSAILPRIRTAIESCVTLHILQGQTENLSRI--GNGDLLKFFHDIEMPIQLTLCQM 1664

Query: 195  NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
               G+      + +L + +    KK++  I +   G   +   + A+   L    G+   
Sbjct: 1665 ELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQH-GSRFNLGSSQAVAKVL----GLHRK 1719

Query: 255  DMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                  T + +L   N       LIL     SG     +  L E   +D R+ G    Y 
Sbjct: 1720 AKGRVTTSRQVLEKLNSP--ISHLILGYRKLSGLLAKSIQPLMECCQAD-RIHGQSITYT 1776

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372
            A  TGR S      QN+ ++                  +I     +     RS  +    
Sbjct: 1777 A--TGRISMTEPNLQNVAKE-----------------FSIQVGSDVVHISCRSPFMPTDE 1817

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
             + L+ AD   +E R+LA ++ +   ++   + +D+++   A        +V+++ R   
Sbjct: 1818 SRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNST 1877

Query: 433  KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            K +   + Y  G +          L+  +    + S    + ++    +   + +     
Sbjct: 1878 KQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFAHSK 1932

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
               + + G          R   + +    + L               +            
Sbjct: 1933 GFVETITGR---------RRYLENINSDVEHLKNQAERQAVNSTIQGS------------ 1971

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                                        N           Y  KL               
Sbjct: 1972 ----------------------AADIAKNAILKMEKNIERYREKLA-------------- 1995

Query: 613  GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                   N  D+V+ +HDE++ E P      +  + SL M         +PLK 
Sbjct: 1996 ----LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK--LSVPLKV 2043


>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
          Length = 2117

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/700 (13%), Positives = 178/700 (25%), Gaps = 148/700 (21%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG--- 85
             +   A +W            +  + ++L        V     +   +     K LG   
Sbjct: 1485 RLEGVAVSWRSGQAFYVPLHRRDDLLAELRPLFWSAAVEKATWDLRGQLAALAKVLGPGA 1544

Query: 86   IDIPSKRWICTSVLARTNGLPSSLKN------ACLALNFSEH-LTKMEEGKA-----LIA 133
            + +P  +       A   G P +L++          L   +    K E   +        
Sbjct: 1545 LGVPGDQ------AA---GCPLALRDPLVDVRVAAWLGTPDDGRLKDESSHSVGSGRKEP 1595

Query: 134  RFCKGSIDSPPYDCTRANHVQAWQL-------FGEYCKRDVEATRELFKRLIPLSDGERD 186
                  +         A   Q  Q              R     R++++ L     G+ +
Sbjct: 1596 YTLSDMLKIRGGQAVWAEATQGMQASTAASGARRADAGRRAAQARKMWQLLRSRLRGD-E 1654

Query: 187  LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
            L             +           + +  ++L+            S      +   LF
Sbjct: 1655 LLPPLWRTEMPLEPM-----------LQRRIEELEGMAHAEAGQEF-SLSSPQEVSRILF 1702

Query: 247  LITGI-------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
             +  +       DL      T + +L   +   +A+ +  +R   +         L   V
Sbjct: 1703 EVLKLAPPPCAKDLKSGGYSTGQEVLLELHEHPIARLIFEHRKLRTLLNRQGGPGLLPFV 1762

Query: 300  S--------------SDG----RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                             G    R+RG++       T R +      Q +P+    + +LT
Sbjct: 1763 QGFKMHLAYAEAVSYPGGLVLKRIRGSINQ-----TCRLAMDEPNLQCVPKPRAYKVLLT 1817

Query: 342  QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                 L    + A      +  +R+  +A  G  L+ AD   IE R++A  +G+    + 
Sbjct: 1818 PG--ELGSAASGASAHADRTANLRAAFVAPPGCVLLSADYRQIEFRLMAHFSGDPGLARV 1875

Query: 402  F-ANGEDIYVTTYAKAFNTPIDK-------------VSKEQRAIGKVMELALGYQGGAKV 447
            F  +G D +    A+    P ++             V+++QR   K +   L Y  GA  
Sbjct: 1876 FSEDGADPFRLLAAQWLGAPQEQARPRGWLGRGRRGVTQQQRDHAKQLTYGLLYGMGAAK 1935

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                     L                     E+    +  +       + L G       
Sbjct: 1936 LADE-----LGCSVAEARTAQEKFRASMPGIEAWQARVVAECRRLGYVETLAGR------ 1984

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
               R     +        +G      E  + +     +   L        V I    +  
Sbjct: 1985 ---RRYLPNIN-----CRDGRKRAAAERQAKNTVCQGSAADL---AKAAMVAIHTRLAAW 2033

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
            L                                     +                 +VL 
Sbjct: 2034 LALGSGGNCGCGGGPGGGP-------------------AA---------------RLVLQ 2059

Query: 628  VHDEIVSETPDTPYFSVGTLCS-LMTK-NPSWAKGLPLKA 665
            +HDE + E  +     V  L    M          +PL+ 
Sbjct: 2060 IHDEFLLEVAEPLLEPVARLVRDCMEGLASGVRLRVPLRV 2099


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 114/409 (27%), Gaps = 87/409 (21%)

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
              + LI  +   +      +  L E    DGR+  +L     + TGR S       N P
Sbjct: 656 HAIESLIQLKQVETLL-TTFIIPLRELADKDGRIHCSLNMN--TETGRISARKPNLMNQP 712

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
             ++                            +RS   A  G KL+VAD   +E R+LA 
Sbjct: 713 SHDKDVY------------------------KIRSAFQAGKGNKLIVADYGQLELRILAH 748

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +      I+AF  G D +  T              + +   +  EL L +          
Sbjct: 749 MTNCKAMIEAFKMGGDFHSRTAMGM--------YPKLKEEIEKGELLLEWDKSQG----- 795

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                             S+     +  +  +        F+          +    AW 
Sbjct: 796 -------EPPAPLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCSMKEAQEALDAWF 848

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
           A  + V +  ++  +           +   R                     S+R LV  
Sbjct: 849 ADRKEVKEWQENTKKIALEHGYTQTMMGRYRNLERLTHSK------------SARHLVQH 896

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIV 625
            ++                           +Q  + D++   M          + GY ++
Sbjct: 897 GLRASI---------------------NTPIQGGAADLVIAAMVKVSQDPKLNELGYKLL 935

Query: 626 LTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           L +HDE++ E P+     ++  +  +M         L ++ +      +
Sbjct: 936 LQIHDELILEGPEEHAQEALARVIEIMENPLDTPLLLKMEVDAKVGNNW 984



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVIT------LCAYAWDDEPVKLWD-RTEQSAMPSDLLQ 59
           D ET          + +   +  I            + + P    D   + + +     +
Sbjct: 97  DTETI-DVDAK---LESPIGKGKIICASAFCGIDVDFGNGPRLFIDNFAQNTDLIQIFKE 152

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK--NACLALN 117
           YL D     + HN  F+R +F    GI++       T  LAR        K  +      
Sbjct: 153 YLEDSRYKKIWHNYGFDRHIFYNH-GINVQGFG-GDTMHLARLADPSRGPKEYSLANVTK 210

Query: 118 FSEHLTKME 126
             E   K  
Sbjct: 211 HYEEEIKYL 219


>gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus]
          Length = 1219

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 91/637 (14%), Positives = 142/637 (22%), Gaps = 142/637 (22%)

Query: 90   SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                  T V A           A  AL F        +G+   A                
Sbjct: 655  VSGLFDTRVAAWMTDTGK----ADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAI 710

Query: 150  ANHVQAWQ---LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               V   +            + A  E  K L      E     +   +   G     + V
Sbjct: 711  VAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERV 770

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTL 261
             +  + +    + L    VK   G   +      +   LF    +         +   T 
Sbjct: 771  TRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHASTS 830

Query: 262  KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG---------------RLR 306
              +L            IL     +      ++ L+E                     R+ 
Sbjct: 831  AEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGAARIH 890

Query: 307  GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
             T     A RTGR S      Q +P+                         G+    VR 
Sbjct: 891  ATWNQTSA-RTGRLSCSRPNLQQMPKGSDP-------------------LAGVEGVNVRD 930

Query: 367  CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK------------AFANGEDIYVTTYA 414
               A+    L+ AD + IE RVLA    +                 A   G D+Y    A
Sbjct: 931  AFSATRSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAA 990

Query: 415  KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
            + F      VS E+R   KV+ L + Y  G            L++ +        S  + 
Sbjct: 991  QVFAKEEHGVSDEERNRAKVVCLGITYGMGTPQ-----VAKKLEITESQAQGLVRSFLKA 1045

Query: 475  WEQAESHHLWM-------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            +   E                   +    E      L G    L +              
Sbjct: 1046 FPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEIN--------NSRN 1097

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
                                       +V+              RRL             
Sbjct: 1098 AAAKAQAERQAVNSVVQGTAADIMKTAMVLVA------------RRLD------------ 1133

Query: 582  TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP--DT 639
                   R     G     ++                       + +HDE+V E P  + 
Sbjct: 1134 -----AWRSSLDEGLDCPRLI-----------------------MQIHDELVLECPACEE 1165

Query: 640  PYFSVG-TLCSLMTKNPSWAKGL--PLKAEGYEAKRY 673
                +   L   M        G+  PL         +
Sbjct: 1166 DLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSW 1202


>gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 222

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 98/266 (36%), Gaps = 59/266 (22%)

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
                V+   R  GK+ ELALGY G     K+M                           
Sbjct: 6   VEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------------------- 39

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                         A++  +     + +  AWR  +  + +LW D+       V++    
Sbjct: 40  --------------ALEMGIEEEELQPLVTAWRQSNSNITKLWWDVDRAVKVCVKQKTPT 85

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------ATSQLMR 589
                     +        + IVLPS RRL Y   +   +              T +  R
Sbjct: 86  ET------HGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGTKKWER 139

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             +YG K  ENIV AISRDIL   M+        IV  VHDEI+ E       S   +C 
Sbjct: 140 IESYGPKFVENIVHAISRDILYHAMQTL--KNCSIVAHVHDEIIIEA--DMRMSFSAICE 195

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
            M + PSWA GL L A+GYE + Y+K
Sbjct: 196 QMARTPSWANGLLLSADGYECQFYQK 221


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 106/745 (14%), Positives = 191/745 (25%), Gaps = 204/745 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRTEQSAMP-SDLLQYL 61
           L  D ET   QP          E+  + L    A D + + L D  +      +DL  + 
Sbjct: 21  LCFDTETLQLQP----------ERGKLRLLQLGARDRDTIVLIDCFQLDKGDWADLRWFF 70

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN-----GLPSSLKNACLA 115
                  +AHN++F+    ++    +I    W  C+ + +R            L +    
Sbjct: 71  STPDRFWLAHNAVFDLGWLQEH---NIYPAGWVRCSMLASRLLTNGLPNSKHGLDSVVKR 127

Query: 116 LNFSEHLTK----MEEG---KALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRD 166
               E   +       G   +  +             D    +           +   R 
Sbjct: 128 YLKKELSKEQQRSDWSGDLSEEQLEYAANDVAALMELDPILEHRISRDRLGPAFKLECRA 187

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL---------QELIAQER 217
           + A  ++++  +P +        +D   +    + D  ++L           +E   Q  
Sbjct: 188 LPAMAQMWRTGLPWNAENLQQRKVDYEYDITQLKQDFLMLLDKALPEEHKLPRERDEQRI 247

Query: 218 KKLDEDIVKLTDGII-------------------------------------RSSRQTYA 240
             L + + ++                                           +      
Sbjct: 248 SYLKDKVTEMGHYDKAYEKWYAELESLENSTTFNTRSKDEGSIRLGTKKYAGFNINSPKQ 307

Query: 241 LRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
           L   L +I G    D       + +++ S++   ++ +  +  +          + ++ E
Sbjct: 308 LVEKLTVILGEPPRDANGKPSASRQALRSYAADHEVIQIYLEWKRCEKRRQ--MIESIQE 365

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +   G +R +    GA   GR S      Q +PR                         
Sbjct: 366 KMDGTGFVRASYMQLGAES-GRMSCIKPNNQQIPRD------------------------ 400

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  RSC+ A  G  LV AD   +E R+ A +A ++  I AF  GED +  T     
Sbjct: 401 ----KQFRSCVEAPEGWLLVDADFGQMELRLAAAVADDERMIAAFQAGEDPHTVTAKAI- 455

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                      R   K     L Y  GA   +  A   G+                    
Sbjct: 456 --------GCDRQTAKSANFGLLYGSGATGLRNYAGGMGI-------------------- 487

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                               +       ++  W    QGV +  +D         +    
Sbjct: 488 -------------------TMTQERAADIRNEWLGVFQGVAKWQRD---NAKEADETQDY 525

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
             A     +                 S  R          +                   
Sbjct: 526 KWAATRVPI-----------------SGMRRYLQGDMNRLTVR----------------- 551

Query: 598 TENIVQAISRDILCEGM----KNATKNG---YDIVLTVHDEIVSETPDTPY-FSVGTLCS 649
               +Q     IL   +        + G     I   VHDEI+    +        TL  
Sbjct: 552 CNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVHDEILLLVRENAAQEWAATLKQ 611

Query: 650 LMTKNP-SWAKGLPLKAEGYEAKRY 673
           +M      W   +P  AE    K +
Sbjct: 612 VMEDAEAKWLGEIPALAEVSVGKTW 636


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 104/383 (27%), Gaps = 88/383 (22%)

Query: 300  SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              +GR+  +L     + TGR S      QN P  E+                        
Sbjct: 845  GENGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 881

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R   +A+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 882  ---KIRQAFVAAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTH 938

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              + V   +                           G +         +  +     +  
Sbjct: 939  IREAVENGEV------------------LLEWHPQPGEEKPPVPLLKDAFGSERRKAKML 980

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
            +  +         A   K+     +     W +  + V    +                 
Sbjct: 981  NFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDRKEVSDWQEQRKFEARE--------- 1031

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                +     R   +  VK   +   +    + R          
Sbjct: 1032 -----------------FRRVHTLLGRARWFPSVK---NATGSVKGHIERAAI------N 1065

Query: 600  NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMT 652
              VQ  + D+    M          + G+ ++L VHDE++ E P+     ++  +   M+
Sbjct: 1066 TPVQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMS 1125

Query: 653  KNP--SWAKGLPLKAEGYEAKRY 673
            K         + L  +   AK +
Sbjct: 1126 KPFGGKNILRVDLSVDSKCAKNW 1148



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/346 (9%), Positives = 83/346 (23%), Gaps = 76/346 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQ--SAMPS 55
             D E  +   + +       +   I   +        + D    +W D  +     +  
Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGDIICFSIYSGPEADFGDGKSCIWVDVLDGGGKNLLV 443

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
           +   + +D ++  V HN  F+  + +           +   T  +AR            S
Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500

Query: 109 LKNA--------------CLALNFSE-----HLTKMEEGKALIARFCKGSIDSPP----- 144
           L+                   L   E        K   G+  + +       +       
Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560

Query: 145 ------YDCTRANHVQAWQLFGEYCKRDVEATRELFK-------RLIPLSDGERDLW-LL 190
                       + + +      Y     + ++ ++         +    +     +  L
Sbjct: 561 LQKTERELWICYSALDSISTLMLYESLKNKLSKRIWTFDGVRKGSMYEFYERYWRPFGEL 620

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYL 245
              +   G  +D   + +++++   E++               D    +      LR   
Sbjct: 621 LVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCPDAKYMNVGSDTQLRQLF 680

Query: 246 F----------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           F               +         K I          + + L+R
Sbjct: 681 FGGIQNRKNSDESLPYEKEFKVPNVDKGIEEGKKAPTKFRKIRLHR 726


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/666 (13%), Positives = 181/666 (27%), Gaps = 122/666 (18%)

Query: 21  VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVA 70
           ++   + + I+  ++   D     W+                   +L   +  + +  V 
Sbjct: 387 LFQVDDSSFISCVSFCRADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVM 446

Query: 71  HNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTK 124
           H+   +  + +K       I +  +      V           +  N C           
Sbjct: 447 HDGKEQLKMLRKAIPQLQKISVKLE---DAKVANWLLQPDKTVNFLNMCQTFAPECTGLA 503

Query: 125 MEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
              G  +   +     S    P   T         +     +            L    D
Sbjct: 504 NLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILKGQTENLGRI--GEGNLLKFFHD 561

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  + L    +   G+      + +L + +    KKL+  I +   G   +   + A+ 
Sbjct: 562 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQH-GSRFNLGSSQAVA 620

Query: 243 MYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
             L    G+         T + +L   N       LIL     S      +  L E   +
Sbjct: 621 KVL----GLHRKARGRVTTSRQVLEKLNSP--ISHLILGYRKLSCLLAKSIQPLMECCQA 674

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D R+ G    Y A  TGR S      QN+ ++                   I       +
Sbjct: 675 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FCIQVGSDAVN 714

Query: 362 DCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              RS  +     + L+ AD   +E R+LA ++ +   ++   + +D+++   A      
Sbjct: 715 ISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIK 774

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             +V+ + R   K +   + Y  G +          L+  +    + S    E ++    
Sbjct: 775 ESEVTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARIISDQFHEAYKGIRD 829

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +   + +        + + G    L                + L +     V      SA
Sbjct: 830 YTRRVVNFARGKGFVETITGRRRYLEMTN---------SDMEHLKKAERQAVNSTIQGSA 880

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
             +A    L M ++       L                                      
Sbjct: 881 ADIAKNAILKMEKNIERYREKLALG----------------------------------- 905

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK 659
                                 D+V+ +HDE++ E P      +  + S+ M        
Sbjct: 906 ------------------DKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--L 945

Query: 660 GLPLKA 665
            +PLK 
Sbjct: 946 SVPLKV 951


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/727 (11%), Positives = 176/727 (24%), Gaps = 133/727 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLK 110
              Y     V  V HN  F+R + +   G+ +       T  +AR            SL+
Sbjct: 265 FKPYFESPDVKKVWHNYGFDRHVIENH-GVKLAGFA-ADTMHMARLWNSNRKLEGGYSLE 322

Query: 111 NAC-----------------LALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANH 152
                                 L  S+   K   GKA + +          P        
Sbjct: 323 ALSSDPKVMSDAGEMYSEAGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTD 382

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSD--------------------GERDLW---- 188
            +  + + EY   D +AT  L + L                            D +    
Sbjct: 383 PEQRETWIEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYVHYL 442

Query: 189 ----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTY 239
                +   +   G  +D   +   ++   +++K  ++       G        +     
Sbjct: 443 REFGEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVGSGI 502

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            +R  LF   G       +  ++     + +++   +   N          K     E  
Sbjct: 503 QVRQLLFA--GAPNKRRDKPGVEKTREFAMVSKEWTEWDENGREGKA---PKKAAKFELH 557

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               R      +   + TG  +      + L  +  +   L     AL   +   +    
Sbjct: 558 GITKRNLQPPVY---TTTGLPAVSSVVLRALAGKPGAARELVDNWDALADDQKKDE---A 611

Query: 360 ASDCVRSCIIASNG-------KKLVVA--DLAGIEARVLAWIA--GEDWKIKAFANGEDI 408
            +    S  +A  G          + A  D+A I+  +  +I     D            
Sbjct: 612 LAKKCGSAFLAFGGGFDGVEACAAIDALNDVAAIDTLLSNFIIPLQSDNLRGFNGRVHAA 671

Query: 409 YVTTYAKAFN------------TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                                    D+    +    +   + +    G    + +A   G
Sbjct: 672 LNINTETGRLSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAG 731

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP---------------EFAVKDKLIGT 501
               + +                       +Q                 + A+   +  +
Sbjct: 732 CVSMREAFEAGGDFHSRTAMGMYKEIREAMEQGKCLLEYGDIDDDAGGEKPALVKDMFAS 791

Query: 502 ACEL-----VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                       A+     G+ + +   T      V    S     V     +  ++   
Sbjct: 792 ERRKAKVLNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYS-DRPEVREWQAVQHKKAAE 850

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
              +     R     +             +               +Q  + DI    M  
Sbjct: 851 KGKVNTLLGRHRNLPEASSSDEMRRGHALRAS---------INTPIQGGAADIAMLAMIQ 901

Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNP---SWAKGLPLKAE 666
             +       G+ +++ +HDE++ E P+        L  L M K          + L  +
Sbjct: 902 IHRCPRLRELGFKLLMQIHDEVILEGPEEHRDEALALVKLHMEKPFNDHENLCDVELSVD 961

Query: 667 GYEAKRY 673
           G  AK +
Sbjct: 962 GDYAKTW 968


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 105/386 (27%), Gaps = 90/386 (23%)

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 736  NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 775

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   IAS G  L+VAD   +E R+LA +A      +AF  G D +  T    
Sbjct: 776  ------KIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDFHSRTAMNM 829

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +    + V   +                           G +         + ++     
Sbjct: 830  YPHIREAVENGEV------------------LLEWHPQPGQEKPPVPLLKDAFASERRKA 871

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            +  +  +         +   K+     +     W    Q V +  +   +          
Sbjct: 872  KMLNFSIAYGKTAIGLSRDWKVSIEEAQDTVNLWYNDRQEVRKWQELRKKEAIQNGYVLT 931

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             +   R   V R   +++                                + R       
Sbjct: 932  LLGRARKFPVYRSRAQKN-------------------------------HIERAAI---- 956

Query: 597  LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                 VQ  + D+    M          + G+ ++L +HDE++ E P     +   +  +
Sbjct: 957  --NTPVQGSAADVAMCAMLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENAKDIVVN 1014

Query: 650  LMTKNP--SWAKGLPLKAEGYEAKRY 673
             M++         + L  +   A+ +
Sbjct: 1015 CMSEPFNGKNILSVDLSVDAKCAQNW 1040



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 66/299 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
             D E  S   +         +   +   +        + D    +W D        + +
Sbjct: 280 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 335

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
           +   +  D ++  V HN  F+  + +      I    +   T  +AR            S
Sbjct: 336 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 392

Query: 109 LKNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           L+        L           F +   K   GK  + +              +   ++ 
Sbjct: 393 LEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIP-PVKELQMED 451

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQT 193
            + +  Y   D  +T +L++ +                      D  ++ W     L   
Sbjct: 452 REAWISYSALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAK 511

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD------EDIVKLTDGIIRSSRQTYALRMYLF 246
           +   G  +D D + +  E++A+  +++              D    +      LR   F
Sbjct: 512 MESEGMLVDRDYLAQ-IEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFF 569


>gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 89/317 (28%), Gaps = 89/317 (28%)

Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           R   +    G K+  AD + +E RVLA I+ ++  I AF +  DI+  T    F+   D+
Sbjct: 1   RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V    R   K +                    G+     SQN+                 
Sbjct: 61  VDSLMRRQAKAVNF--------------GIVYGISDYGLSQNL----------------- 89

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                         +     +     +   +  V +  +D+             +  RR 
Sbjct: 90  -------------GITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRY 136

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                      +                    + + +NT                   +Q
Sbjct: 137 IPEIVSRNFNVRG-----------------FAERTAMNT------------------PIQ 161

Query: 604 AISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656
             + DI+ + M          K    ++L VHDE++ E P+     +  +   +M     
Sbjct: 162 GSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE 221

Query: 657 WAKGLPLKAEGYEAKRY 673
               +PLK +      +
Sbjct: 222 --LSVPLKVDSAFGDTW 236


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/794 (11%), Positives = 184/794 (23%), Gaps = 154/794 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-------DEPVK----LWD-RTEQSA 52
             D E         V          +T  +           +   K      D       
Sbjct: 56  ACDTE----VAYISVADQTPVGHGQVTCFSVYVGPDVNFAPEGESKRSLLWVDTLRGGDG 111

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-- 110
           +     +Y  +  V  V HN  F+R + +   GI +       T  +AR       L   
Sbjct: 112 VWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARLWNSNRKLDGG 170

Query: 111 --------------NACLALNFSEHL------TKMEEGKALIARFCKGSIDSP-PYDCTR 149
                              L     +       K   GK  + +          P     
Sbjct: 171 YSLEALSSSADAMSECAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTMILPPIEEI 230

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE--------------------RDLW- 188
                +   + EY   D +AT  L + L     G                      D + 
Sbjct: 231 QEARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYT 290

Query: 189 -------LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI-----IRSSR 236
                   L   +   G  +D   +   +++  ++++  ++              I +  
Sbjct: 291 FYLAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASKCEGARIMNVG 350

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               +R  LF   G       +  ++     +  +                       L 
Sbjct: 351 SGLQVRQLLFA--GAKNKRRDKPGVELTREFTQESSEWIAWDAAGREGKAPKKTMKVAL- 407

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 G     +Q    + TG  +      + L             +   +        
Sbjct: 408 -----HGITVKPIQVQTFTATGLPAVSSVVLRAL---AGKPGAARAIMDTWDSLADAEKT 459

Query: 357 LGLASDCVRSCIIA----SNGKKLVVA-----DLAGIEARVLAWIA---GEDWKIKAFAN 404
             +      +   A      G +   A     D+A I+  +  +I    G+D  I+    
Sbjct: 460 EDVLKKACGTAFEAFGGGKEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDD--IRGPEG 517

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL--GYQGGAKVFKTMASHCGLDLQQF 462
                +    +       + S + +   +     +   +  G      +A +  L+L+  
Sbjct: 518 RVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNILVVADYGQLELRLL 577

Query: 463 SQNVKSTSTFEDWEQAESH-------HLWMQDQYPEFAVK--------DKLIGTACELVK 507
           +      S  E +E                  +  +            + +       + 
Sbjct: 578 AHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEVVLEYGEQEETVDEKDRPALV 637

Query: 508 KAWRAKHQG------------------VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
           K   A  +                          L E    V          R     + 
Sbjct: 638 KDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAANTVELWYADRPEVREWQEVQK 697

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
            M   K  V  +L   R     D         +   +               +Q  + DI
Sbjct: 698 KMAVEKNLVRTLL--GRVRNLPDASSKNEAFKSHALRAS---------INTPIQGGAADI 746

Query: 610 LCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW---AK 659
               M    +       GY +++ +HDE++ E P+        L    M           
Sbjct: 747 AMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLL 806

Query: 660 GLPLKAEGYEAKRY 673
            + L  +G  AK +
Sbjct: 807 NVALAVDGDYAKTW 820


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 106/406 (26%), Gaps = 85/406 (20%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
            +     S+            L       S  +   +  L  +  S  R R        +
Sbjct: 610 TALKAFPSLEEGIEACHAIASLCEVCSIDSLISN-FILPLQGSNVSGKRGRVHCSLNINT 668

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGR S      QN P  E+                            +R   IA+ G  
Sbjct: 669 ETGRLSARRPNLQNQPALEKDRY------------------------KIRQAFIAAPGNS 704

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           L+VAD   +E R+LA +A     ++AF  G D +  T    +    + V K +       
Sbjct: 705 LIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHEAVDKGEV------ 758

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                               G +         +  +     +  +  +         A  
Sbjct: 759 ------------LLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARD 806

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
            K+     +     W  + Q VL+  +   +      +    +                 
Sbjct: 807 WKVSIEEAKETVNLWYRERQEVLKWQEARKKEAREDGRVHTLL----------------- 849

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                     R  V+  +       N     + R            VQ  + D+    M 
Sbjct: 850 ---------GRARVFPSI---SHASNAQKRHIERAAI------NTPVQGSAADVAMCAML 891

Query: 616 ------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
                    + G+ ++L +HDE++ E P         +    M+K 
Sbjct: 892 QISRNKRLKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKP 937



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/329 (10%), Positives = 87/329 (26%), Gaps = 65/329 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS--AMPS 55
             D E  +   + +           I   +        + +    +W D  +     +  
Sbjct: 208 ACDTE-VAKIDVKQETP---VGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLV 263

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
               +  +  +  V HN  F++ + +     ++P   +   T  +AR            S
Sbjct: 264 KFKPFFENPEIKKVWHNYSFDKHVIQNY---EVPVCGFHADTMHMARLWNSSRRTEGGYS 320

Query: 109 LKNA------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           L+              C      +   K   GK  + +                   +  
Sbjct: 321 LEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGK-MITVAPVEELQREER 379

Query: 157 QLFGEYCKRDVEATRELFKRLIP-----------------LSDGERDLW----LLDQTIN 195
           + +  Y   D  +T +L++ L                   + D  ++ W     L   + 
Sbjct: 380 EPWICYSALDAISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRME 439

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLITG 250
             G  +D   + +++++   E++                    +      LR   F   G
Sbjct: 440 TEGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFF--GG 497

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           I        ++  +     +  + K +  
Sbjct: 498 IAN-SKDPDSILPVEKKIKVPNVDKVIEE 525


>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
          Length = 1986

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/720 (13%), Positives = 178/720 (24%), Gaps = 225/720 (31%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------ 55
            S+   D+     + +     +       I   A  W++ PV   +  +   M        
Sbjct: 1386 SEFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIE 1439

Query: 56   ----------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
                       +++ +R  +V  +  N  F+    K             C          
Sbjct: 1440 MWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKY--------PCVSC---------Q 1482

Query: 106  PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
              S       L+    + K  E    +  F +        D         W         
Sbjct: 1483 RLS------RLHLDYKMLKNVEVLDNLYVFLQPVSVHSGLDICLVAW-VLWPDEESKTVP 1535

Query: 166  DVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            ++E TR L   L  L             E  L  +   +   G   D+D  L+ + +I +
Sbjct: 1536 NLEKTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIR 1595

Query: 216  ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------SEGTLKSILSHSN 269
            + K+L+++  KL  G   S   T  +   L+    + +            T K  L H  
Sbjct: 1596 KLKELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR 1654

Query: 270  ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY--------GASRTGRWS 321
                   +I      +      LN    ++ S  +L    Q Y         ++ TGR S
Sbjct: 1655 DQHPIISVIKEHRTLAKL----LNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLS 1710

Query: 322  GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                  Q                                               LV AD 
Sbjct: 1711 MEEPNLQ-------------------------------------------ENWLLVTADY 1727

Query: 382  AGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            + IE R++A  + +   I+  +  + D++    ++        +  ++R   K     + 
Sbjct: 1728 SQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGIL 1787

Query: 441  YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                           G+                                   A + +   
Sbjct: 1788 --------------YGMG------------------------------ANSLAEQLECSP 1803

Query: 501  TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                   ++++    GV     +              +                      
Sbjct: 1804 EDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLM---------------------- 1841

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618
                 RR   S +    S      ++  R+         +I Q  + DI+   M      
Sbjct: 1842 ----GRRRFLSKITAGNSKEK---AKAQRQA------VNSICQGSAADIIKVAMIKVHSA 1888

Query: 619  ------------------------KNGYDIVLTVHDEIVSETPD-TPYFSVGTLCSLMTK 653
                                    +    ++L VHDE+V E        +V  L ++M  
Sbjct: 1889 ITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMEN 1948


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 103/399 (25%), Gaps = 90/399 (22%)

Query: 286  GSAILKLNTLS--EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                  +  L        +GR+  +L     + TGR S      QN P  E+        
Sbjct: 712  KLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQPALEKDRY----- 764

Query: 344  IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                                +R   +A+ G  L+VAD   +E R+LA +      ++AF 
Sbjct: 765  -------------------KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFK 805

Query: 404  NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
             G D +  T    +    D V +                   KV        G D     
Sbjct: 806  AGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQPGQDKPPVP 847

Query: 464  QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                +        +  +  +         +    +         K W    + +    K 
Sbjct: 848  LLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEISAWQKK 907

Query: 524  LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                     +    +                           R   + ++          
Sbjct: 908  QKALAFEKCEVYTLL--------------------------GRSRQFPNM---THAGPGQ 938

Query: 584  TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637
             S + R            VQ  + D+    M    +       G+ ++L VHDE++ E P
Sbjct: 939  KSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGP 992

Query: 638  DTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
                     +    M+K    +    + L  +   AK +
Sbjct: 993  TESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1031



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 85/309 (27%), Gaps = 66/309 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392

Query: 107 SSLKNACLALNFSEHLTKM--EEGK-ALIARFCKG-------SIDSPPYDCTRANHVQAW 156
            SL+           + K   + GK ++   F +           +   +  +    +  
Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIND 196
           +L+  Y   D  +T +L++ L    +  E                + W     L   +  
Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF----- 246
            G  +D   + ++++    ERK   +   K       D    +      +R   F     
Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKN 572

Query: 247 -LITGIDLV 254
               G    
Sbjct: 573 RNKPGETWP 581


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 85/362 (23%), Gaps = 112/362 (30%)

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R S      QN+P                                +R C I     K   
Sbjct: 1   RLSSSDPNLQNIP------------------------VRDDDGKEIRKCFIPEPSCKFFS 36

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD + IE R++A ++ ++  ++AF  G DI+  T +K +   +D+V+  QR   K     
Sbjct: 37  ADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDEVTDSQRKQAKQAN-- 94

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                            G+                                   A +  +
Sbjct: 95  ------------FGIIYGI------------------------------TTYGLAQRMGI 112

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  +   +      V +  +   E                                
Sbjct: 113 DNGEARQLIDDYFTTFPKVKEYMEKAKEIARERGYAETLF-------------------- 152

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
                  RR    D+        T      R            +Q    DI+   M    
Sbjct: 153 ------GRRRYLPDINSKN---GTVRGFAERNAINAP------IQGSEADIIKLAMIRIW 197

Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671
           K          ++L VHDE+           V  +    M         +PL AE     
Sbjct: 198 KRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGAYP--LHVPLIAEAGWGD 255

Query: 672 RY 673
            +
Sbjct: 256 NW 257


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 88/715 (12%), Positives = 186/715 (26%), Gaps = 181/715 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------- 52
             L +D ET       K       E            +     +                
Sbjct: 210 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 266

Query: 53  --MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-SVLARTNGLPS-- 107
             M + +   L  + ++   HN+ F+  +     GI +     I T +V + T       
Sbjct: 267 YFMETYMKPLLEKKDIIV--HNASFDWKVI-YIYGIVLNV--VIDTFAVFSLTLNAKYQT 321

Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
              LK+    L       ++               +       +       +L   Y   
Sbjct: 322 PVGLKHLISLL-LKRDSLEL----------DDLCKNGDFGSIDQNFADLPKELVRLYACA 370

Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L+  ++  +             E             G  ++++   +L + I 
Sbjct: 371 DADNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDID 430

Query: 215 QERKKLDEDIVK-----LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           ++ ++ +  +         D    + +        ++ + G                   
Sbjct: 431 RDLQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAP----------------- 473

Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                                K  L  LS+  + D   +     Y        +      
Sbjct: 474 ---------EQYKLDGKLTADKKALKNLSKMTNPDDTPKYPFVNYFQEFNEVNTLRKNFS 524

Query: 328 QNLPRQERSEEILTQTIQ---ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
           +NLP     +  +   ++      R           +D V+  I    G  +   D + I
Sbjct: 525 KNLPEFCTPDGFMFSGVKQFLKTGRVSISKPNYQSYNDTVKKYIKPRPGFWMGDMDYSSI 584

Query: 385 EARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           E RV+A ++ +   I+AF +   D +    +  +  P + VSK  R   K     + +  
Sbjct: 585 EYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFGIPFGM 644

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G +         G+ +                                F    K      
Sbjct: 645 GNEKL-------GMTI--------------------------------FGKVSKENTRKA 665

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
             +++ +      V + +          V+ G + +                        
Sbjct: 666 TALRERYFKGQDNVREFF---VNAQRDAVKYGYTETH----------------------- 699

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATK 619
             RR  Y+    + + + +   Q   +R          +Q  + DI  + +         
Sbjct: 700 FGRRRYYNK---ETTSVGSIKRQGGNQR----------IQGTAADIYKQAVVRLFLRIIN 746

Query: 620 NGY--DIVL--TVHDEIVSETPDT--PYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668
            G+   ++L   +HDE++ E      P   +  L   M           LK +G+
Sbjct: 747 EGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKVDGF 791


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 103/399 (25%), Gaps = 90/399 (22%)

Query: 286 GSAILKLNTLS--EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                 +  L        +GR+  +L     + TGR S      QN P  E+        
Sbjct: 659 KLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQPALEKDRY----- 711

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A+ G  L+VAD   +E R+LA +      ++AF 
Sbjct: 712 -------------------KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFK 752

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D +  T    +    D V +                   KV        G D     
Sbjct: 753 AGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQPGQDKPPVP 794

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
               +        +  +  +         +    +         K W    + +    K 
Sbjct: 795 LLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEISAWQKK 854

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                    +    +                           R   + ++          
Sbjct: 855 QKALAFEKCEVYTLL--------------------------GRSRQFPNM---THAGPGQ 885

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637
            S + R            VQ  + D+    M    +       G+ ++L VHDE++ E P
Sbjct: 886 KSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGP 939

Query: 638 DTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
                    +    M+K    +    + L  +   AK +
Sbjct: 940 TESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 978



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 60/295 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 227 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 282

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 283 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 339

Query: 107 SSLKNACLALNFSEHLTKM--EEGK-ALIARFCKG-------SIDSPPYDCTRANHVQAW 156
            SL+           + K   + GK ++   F +           +   +  +    +  
Sbjct: 340 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 399

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIND 196
           +L+  Y   D  +T +L++ L    +  E                + W     L   +  
Sbjct: 400 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 459

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
            G  +D   + ++++    ERK   +   K       D    +      +R   F
Sbjct: 460 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 514


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 105/382 (27%), Gaps = 90/382 (23%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGR+  +L     + TGR S      QN P  E+                         
Sbjct: 504 SDGRVHCSLNIN--TETGRLSARRPSLQNQPALEKDRY---------------------- 539

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R   +A+ GK LVVAD   +E R+LA +A       AF  G D +  T    +   
Sbjct: 540 --KIRQAFVAAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHV 597

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            + V K+                     + +    GL+            +     +  +
Sbjct: 598 REAVEKD---------------------RVLLEWEGLEKPPVPLLKDMFGSERRKAKMLN 636

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             +         A    +     +     W +    VL   K+  +              
Sbjct: 637 FSIAYGKTAMGLAKDWNVKLDEAKATVDLWYSDRPEVLAWQKERKQEAHE---------- 686

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                            + +     R     D+    S L +      R           
Sbjct: 687 ----------------TLRVHTLLGRARHLPDINSSNSLLRSHM---ERAAINTP----- 722

Query: 601 IVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTK 653
           + Q  + D+    M          + G+ ++L VHDE++ E P         L    M  
Sbjct: 723 VQQGSAADVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEAKELVIKSMMY 782

Query: 654 NP--SWAKGLPLKAEGYEAKRY 673
                    + L  +G  A+ +
Sbjct: 783 PFNGENILDVELVVDGDYAENW 804



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 67/302 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVKLWDRTEQSAMPSD 56
             D E  +   + K           IT  +        + +    + +        +   
Sbjct: 41  ACDTE-VAGIDVKKESP---VGHGQITCFSIYCGPGADFGYGKNRLWVDVLDGGDDVLRV 96

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------PSSL 109
             +Y  D ++  V HN  F++ +  +  GI  P   +  T  LAR N           +L
Sbjct: 97  FKRYFEDPSIQKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLNDSARRGSKGGYAL 154

Query: 110 KNACLALN-----------------FSEHLTKMEEGKALIARFCKGSI-DSPPYDCTRAN 151
           +                          +   K   GKA + +          P       
Sbjct: 155 EVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELFGKAKLKKDGTPGKIKVVPPVDELQR 214

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL--------------------IPLSDGERDLW-LL 190
             +    +  Y   D   T  LF  L                        +     +  +
Sbjct: 215 DEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNTPWSVAELRHKGSMYDFYEKYWRPFGEV 274

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKL------DEDIVKLTDGIIRSSRQTYALRMY 244
              +   G  +D D +    E +A+ ++K+              +    +      +R +
Sbjct: 275 LVQMEAYGMLVDYDHL-ATVEKLARAQQKISVSRFRKWAARYCPNAARMNVGSDAQIRQF 333

Query: 245 LF 246
           LF
Sbjct: 334 LF 335


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 88/715 (12%), Positives = 186/715 (26%), Gaps = 181/715 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------- 52
             L +D ET       K       E            +     +                
Sbjct: 128 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 184

Query: 53  --MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-SVLARTNGLPS-- 107
             M + +   L  + ++   HN+ F+  +     GI +     I T +V + T       
Sbjct: 185 YFMETYMKPLLEKKDIIV--HNASFDWKVI-YIYGIVLNV--VIDTFAVFSLTLNAKYQT 239

Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
              LK+    L       ++               +       +       +L   Y   
Sbjct: 240 PVGLKHLISLL-LKRDSLEL----------DDLCKNGDFGSIDQNFADLPKELVRLYACA 288

Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           D + T  L+  ++  +             E             G  ++++   +L + I 
Sbjct: 289 DADNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDID 348

Query: 215 QERKKLDEDIVK-----LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
           ++ ++ +  +         D    + +        ++ + G                   
Sbjct: 349 RDLQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAP----------------- 391

Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                                K  L  LS+  + D   +     Y        +      
Sbjct: 392 ---------EQYKLDGKLTADKKALKNLSKMTNPDDTPKYPFVNYFQEFNEVNTLRKNFS 442

Query: 328 QNLPRQERSEEILTQTIQ---ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
           +NLP     +  +   ++      R           +D V+  I    G  +   D + I
Sbjct: 443 KNLPEFCTPDGFMFSGVKQFLKTGRVSISKPNYQSYNDTVKKYIKPRPGFWMGDMDYSSI 502

Query: 385 EARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           E RV+A ++ +   I+AF +   D +    +  +  P + VSK  R   K     + +  
Sbjct: 503 EYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFGIPFGM 562

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G +         G+ +                                F    K      
Sbjct: 563 GNEKL-------GMTI--------------------------------FGKVSKENTRKA 583

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
             +++ +      V + +          V+ G + +                        
Sbjct: 584 TALRERYFKGQDNVREFF---VNAQRDAVKYGYTETH----------------------- 617

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATK 619
             RR  Y+    + + + +   Q   +R          +Q  + DI  + +         
Sbjct: 618 FGRRRYYNK---ETTSVGSIKRQGGNQR----------IQGTAADIYKQAVVRLFLRIIN 664

Query: 620 NGY--DIVL--TVHDEIVSETPDT--PYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668
            G+   ++L   +HDE++ E      P   +  L   M           LK +G+
Sbjct: 665 EGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKVDGF 709


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/387 (13%), Positives = 97/387 (25%), Gaps = 93/387 (24%)

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                 +  L     S+ RL  ++     + TGR S      QN P  E+           
Sbjct: 1540 LISSFIIPLQRLADSNHRLHTSVNVN--TETGRLSSRRPNLQNQPALEKDRY-------- 1589

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                             +R       G  LVVAD   +E R+L  I      + AF  G 
Sbjct: 1590 ----------------KIRKAFTCEPGNTLVVADYGQLELRLLGHITNCKSMLDAFRVGG 1633

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            D +  T    +           RA     E+ L +              G          
Sbjct: 1634 DFHSRTAMGMY--------PHVRAAVDAGEVLLEWD-------------GEGAPPKPLLK 1672

Query: 467  KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
               ++     +  +  +         +    +  +  +     W      VL   +   +
Sbjct: 1673 DKFASERRKAKTLNFSIAYGKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLLWQRSTIQ 1732

Query: 527  GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                       +                           R  +  D+          +  
Sbjct: 1733 IAHQKKWTRTLM--------------------------GRYRLLPDIDSKARGFVGHS-- 1764

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTP 640
              R            +Q  + DI+ + M          + GY +++ +HDE++ E P+  
Sbjct: 1765 -ERASI------NTPLQGGAADIVMKAMLIIEQDARLKELGYRLIMQIHDELILEGPEEH 1817

Query: 641  YFSVGTLC-SLMTKNPSWAKGLPLKAE 666
                  +   LM          PL  +
Sbjct: 1818 APEARDIVIKLMGNP----LNKPLLVD 1840



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 46/281 (16%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLWDR--TEQSAMPSD 56
              D E      + +           I   +        +        D   +    +   
Sbjct: 1142 ACDTE-VIDIDVKEQSP---IGHGKIICFSIYCGPDIDFGTGSRIWVDILGSNGDEILQI 1197

Query: 57   LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLP------SSL 109
              +Y  DE++  V HN  F+R +F      +I    +   T ++AR            SL
Sbjct: 1198 FKEYFEDESIFKVWHNYAFDRHVFYNH---NIDVVGFGGDTMLMARLWDASRMMRGGYSL 1254

Query: 110  KNACLALNFSE-HLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDV 167
            +     L            G+  +            P         +    + EY  RD 
Sbjct: 1255 EGLTKDLLDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDA 1314

Query: 168  EATRELFKRLIPLS---------DGERDLW--------LLDQTINDRGYRIDLDLVLKLQ 210
            E T  L + L                 D +         L   +  RG ++DL+ +  ++
Sbjct: 1315 EVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVE 1374

Query: 211  ELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
             +  ++  + +E+  +       +    +      ++ +LF
Sbjct: 1375 VIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLF 1415


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 103/387 (26%), Gaps = 87/387 (22%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
           +    +GR+ G L     + TGR S      QN P  E+                     
Sbjct: 655 DIRGPEGRVHGALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 695

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R    A  G  LVVAD   +E R+LA +AG     +AF  G D +  T    
Sbjct: 696 -------IRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAGGDFHSRTALGM 748

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           ++   D ++K         E+ L Y    +           +  + +      ++     
Sbjct: 749 YSNIKDAIAK--------GEVVLEYGEQEEGVD--------EKDRPALVKDVFASERRKA 792

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  +  +         +              + W +    V    +   +          
Sbjct: 793 KVLNFSIAYGKTAHGLSKDWGTSLEEAANTVELWYSDRPEVRDWQEVQKKMAVEKNLVRT 852

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +                           R     D         +   +          
Sbjct: 853 LL--------------------------GRVRNLPDASSKNEAFKSHALRAS-------- 878

Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649
                +Q  + DI    M    +       GY +++ +HDE++ E P+        L   
Sbjct: 879 -INTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKY 937

Query: 650 LMTKNPSW---AKGLPLKAEGYEAKRY 673
            M            + L  +G  AK +
Sbjct: 938 HMENPFPGHVNLLDVALAVDGDYAKTW 964



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 80/327 (24%), Gaps = 77/327 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-------------RTEQS 51
             D E         V          +T  +  +    V                      
Sbjct: 200 ACDTE----VAYIDVSDQTPVGHGQVTCFSV-FCGPDVNFAPEGESKRSLLWVDTLRGGE 254

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK- 110
            +     +Y  +  V  V HN  F+R + +   GI +       T  +AR       L  
Sbjct: 255 GVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARLWNSNRGLDG 313

Query: 111 ---------------NACLALNFSEHLT------KMEEGKALIARFCKGSIDSP-PYDCT 148
                          +    L     +       K   GK  + +          P    
Sbjct: 314 GYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILPPVEE 373

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE--------------------RDLW 188
               V+    + EY   D +AT  L + L     G                      D +
Sbjct: 374 IQEDVEQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFY 433

Query: 189 --------LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----VKLTDGIIRSS 235
                    L   +   G  +D + +   +++  ++++  +E        K     + + 
Sbjct: 434 TFYLAEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAKLMNV 493

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLK 262
                +R  LF   G       +  ++
Sbjct: 494 GSGLQIRQLLFA--GAKNKRRDKPGVE 518


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 110/415 (26%), Gaps = 89/415 (21%)

Query: 269  NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                    L       S  +   L      +S D GR+  +L     + TGR S      
Sbjct: 693  EACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNL 750

Query: 328  QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
            QN P  E+                            +R   +A+ G  L+VAD   +E R
Sbjct: 751  QNQPALEKDRY------------------------KIRQAFVAAPGNSLIVADYGQLELR 786

Query: 388  VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
            +LA +A     + AF  G D +  T    +    D V +                   KV
Sbjct: 787  ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKV 828

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                    G +         +        +  +  +         A   K+     +   
Sbjct: 829  LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 888

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
            K W    + VL       E      +    +                           R 
Sbjct: 889  KLWYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRS 922

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621
              + ++    S          R            VQ  + D+    M    +       G
Sbjct: 923  RRFPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELG 973

Query: 622  YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
            + ++L VHDE++ E P        ++    M+K    +    + L  +   A+ +
Sbjct: 974  WRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 1028


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 107/383 (27%), Gaps = 88/383 (22%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
              GR+  +L     + TGR S      QN P  E+                        
Sbjct: 527 GKGGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 563

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   IA+ G  L+VAD   +E R+LA +A     + AF  G D +  T    +  
Sbjct: 564 ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 620

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
             + + K+Q                           G +         + ++     +  
Sbjct: 621 IREAIEKKQV------------------LLEWYPQPGENKPPVPLLKDAFASERRKAKML 662

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
           +  +         +   K+     +     W  + + VL+  +   +      +    + 
Sbjct: 663 NFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLL- 721

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                     R  V+  +    S L      + R          
Sbjct: 722 -------------------------GRARVFPSLTDASSSLRGH---VERAAI------N 747

Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
             VQ  + D+    M          + G+ ++L VHDE++ E P         +    M+
Sbjct: 748 TPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQVHDEVILEGPTESAEVAKAIVVGCMS 807

Query: 653 KNP--SWAKGLPLKAEGYEAKRY 673
           K         + L  +   A+ +
Sbjct: 808 KPFGGKNFLNVDLAVDSKCAQNW 830



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 84/343 (24%), Gaps = 72/343 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-------PVKLWDRTEQS--AMPS 55
             D E  +   + +       +   IT  +     E            D  +     + +
Sbjct: 71  ACDTE-VARIDVKEETP---IDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLN 126

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
           +   +  D  +  V HN  F+  + +           +   T  +AR            S
Sbjct: 127 EFALFFEDPDIKKVWHNYSFDNHVIENY---GFSVSGFHADTMHMARLWDSSRRLKGGYS 183

Query: 109 LKNA-------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           L+                  L   +   K   GK  + +                   + 
Sbjct: 184 LEALTGDQKVMRGAGSCYKEL-IGKVSMKTIFGKKKLKKDGSEGK-MTIIAPVEELQREE 241

Query: 156 WQLFGEYCKRDVEATRELFKRL------------------IPLSDGERDLW----LLDQT 193
            + +  Y   D  +T +L+K +                    + D  ++ W     +   
Sbjct: 242 REPWICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVR 301

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLI 248
           +   G  +D   + +++++   E++                    +      LR  LF  
Sbjct: 302 METEGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLF-- 359

Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
            G+        TL      +        +I        +    
Sbjct: 360 GGVPNSKDPLLTLPE--DKTFKVPNVDKVIE---EGKKTPTKY 397


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/748 (12%), Positives = 190/748 (25%), Gaps = 187/748 (25%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---MPSDLLQYLR-DETVMCVAH 71
           +  V + A A ++ +   ++      V         A   +   L +YL  +E V+ +A 
Sbjct: 143 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRGEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACLA 115
           N  FE     K     +   +     ++                P        LK A   
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 257

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               + +       K  +  F +            A          EY  +         
Sbjct: 258 IFGVTMNDFAALLKKYKVDFFDEIDASKGEGLLYSAEDADYALQHYEYWSQIAAQIPRYE 317

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
             L  +   E     +   +   G   D +L  + ++     +++  E I ++       
Sbjct: 318 DWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 374

Query: 235 ------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269
                 S +T  ++  +F    I             +  L                    
Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434

Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297
                                                K+  L  +            LS 
Sbjct: 435 SISLPENWESIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 494

Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +           GR+      +  + TGR +      QN+PR +  E            
Sbjct: 495 HIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 541

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R+  +   GK L   D +G E R++AW +G++  I+ F  G D++
Sbjct: 542 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMH 588

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468
             T +        ++ K++R   K     + Y G     + T  +   +           
Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +++   +   +  +  E      + G         +     G+    +      
Sbjct: 649 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 699

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                                 K   + +  +  +  
Sbjct: 700 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 731

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645
               +G           S D++                 +HDEI+ E  D P   V    
Sbjct: 732 GVLAHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVEK 765

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  +M + P     +P++AEG    R+
Sbjct: 766 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 793


>gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500]
          Length = 1192

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/714 (11%), Positives = 175/714 (24%), Gaps = 145/714 (20%)

Query: 7    DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-PVKLWDRTEQSAMPSD--------- 56
            D ET     L             +     +W     V          +            
Sbjct: 540  DEETFFLPKL-----------FHVESIIVSWSPGLAVYQLPLAPSGGVADFKQSFYNDNW 588

Query: 57   --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
              + Q L          NS  +  +   + GI +   R I   +            +   
Sbjct: 589  KLVKQVLEYPYSYKHIWNSKPQLKILL-SKGISLK-HRLIDPKIALWLTDS-----DLHK 641

Query: 115  ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                        +G K +I      +I          NH          C + +  ++ L
Sbjct: 642  DKKLEYVYMDNAKGSKKMIGATKFHNISKLATRSGSTNHFDLAYQA---CYQTLILSQRL 698

Query: 174  FKRLIPL-----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             K+L P       + E  +  +   +   G   D ++    +EL+ ++   L      L 
Sbjct: 699  LKQLDPSSLKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLLV 758

Query: 229  DGIIRSSRQTYALRMYL--FLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDLIL 279
              +         +   +  +L         ++  LK         L   +      ++++
Sbjct: 759  PRLKLDMESKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETISHEHPFPNILM 818

Query: 280  NRLASSGSAILKLNTLSEAV----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-- 333
                 S       + L +       +  R+  T+       TGR +      Q++     
Sbjct: 819  EYRKLSHHINNYADELRKYCYRSTDNSMRIYSTILQTIVP-TGRLAMVFPNLQSIAHPIE 877

Query: 334  ---------------------ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
                                 E     L       N    +       S  +R   +   
Sbjct: 878  FKVAPTFTPSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPKQ 937

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAI 431
            G   + AD + IE R+LA  + +   ++ F N   D++     +    P++++    R I
Sbjct: 938  GYIFLSADYSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRTI 997

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
             K +   + Y  G            L+  +             ++    +   + D   +
Sbjct: 998  AKHLCYGILYGMGIGKL-----AHDLNTTKDKAKAALLRFKTTYQVLTDYLTSVGDSCLK 1052

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                +   G   +   +     ++       ++ E      +           +      
Sbjct: 1053 NGFVETFFGR--KRYFREVFEVYKDTKVTN-EVKESAKRKAKNTIPQGTAADIS------ 1103

Query: 552  RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                           +L    V    +                             +I+ 
Sbjct: 1104 ---------------KLAMIQVDKKLNERGIP-----------------------AEIV- 1124

Query: 612  EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664
                              DE++ E P++    V  +    M      +  +P+K
Sbjct: 1125 ---LQVH-----------DELLLEVPESQLAEVALIVKESMESAAKLSIPIPIK 1164


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 91/653 (13%), Positives = 183/653 (28%), Gaps = 113/653 (17%)

Query: 30   ITLCAYAWDDEPVKLWDR-----TEQSAMP-----SDLLQYLRDETVMCVAHNSLFERIL 79
            I+  +++  D      +           +P      +L + L  + +  V H+   +  +
Sbjct: 1465 ISGVSFSLADNVAYYMNMQNDGRATGQGVPTILKVQELCKLLARKDLTLVMHDGKEQLKM 1524

Query: 80   FKKTLG-IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEG--KALIAR 134
              K +  +   S +     V           S  + C              G  +   + 
Sbjct: 1525 LLKAIPQLQKISAKLEDPKVANWLLQPDRTMSFADMCRTFAPECTALADICGSGRGYSSY 1584

Query: 135  FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                +    P   T         +     +          + L    D E  L L    +
Sbjct: 1585 GLDSASAILPKIRTSIEACVTVHILKGQTENLGRI--GSGQLLKFFHDLEMPLQLTLCHM 1642

Query: 195  NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
               G+     L+ +L + +    +KL+  I +   G   +   + A+   L L   I   
Sbjct: 1643 EFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQH-GSRFNLGSSQAVAKVLGLHRKI--- 1698

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
            +    T + +L   N       +IL     +G     +  L +   +D R+ G    Y A
Sbjct: 1699 NGRVTTSRQVLEKLNTP--ISHMILGYRKLAGLLAKSIQPLLKCCQAD-RIHGQSITYTA 1755

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
              TGR S      QN+      E  +     A+N    +   L                +
Sbjct: 1756 --TGRISMAEPNLQNV----AKEFCIQVGSDAVNISCRLPFMLK------------DEDR 1797

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             L+ AD   +E R+LA ++ +   +K   + +D+++   A        +VS+  R   K 
Sbjct: 1798 CLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQNLRNSTKQ 1857

Query: 435  MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
            +   + Y  G +          L+  +    + S    + +     + + +         
Sbjct: 1858 VCYGIVYGMGMRSLAE-----SLNCSEEEARLISEQFHQAYTGIREYTMRVVKFARNQGF 1912

Query: 495  KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRR 553
             + + G    L           +    + L        +      SA  +A    L M +
Sbjct: 1913 VETITGRRRYLD---------NINSDQEHLKNQAERQAINSTIQGSAADIAKSAILKMEK 1963

Query: 554  HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
            +       L                                                   
Sbjct: 1964 NLERYRDKLGLG------------------------------------------------ 1975

Query: 614  MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                     D+V+ +HDE++ E P      +  + S+ M         +PL+ 
Sbjct: 1976 -----DKSVDLVMHLHDELIFEVPAAKSKKIAKVLSVTMQNCVK--LTVPLQV 2021


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 111/421 (26%), Gaps = 95/421 (22%)

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEA---VSSDGRLRGTLQFYGASRTGRWS 321
           L           L      ++  +   +  L       +SDGR+  +L     + TGR S
Sbjct: 451 LEGKEACMALAALCEVASINTLLSN-FIEPLQGNDIKSASDGRVHCSLNIN--TETGRLS 507

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN P  E+                            +R   +A+ GK LVVAD 
Sbjct: 508 ARRPSLQNQPALEKDRY------------------------KIRQAFVAAPGKSLVVADY 543

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             +E R+LA +A       AF  G D +  T    +    + V KE              
Sbjct: 544 GQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKE-------------- 589

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                  + +                   +     +  +  +         A   K+   
Sbjct: 590 -------RVLLEWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVD 642

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             +     W +    VL   K+  +                               + + 
Sbjct: 643 EAKATVDLWYSDRPEVLAWQKERKQEAHT--------------------------SLRVH 676

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619
               R     D+    + L +      R            VQ  + D+    M    +  
Sbjct: 677 TLLGRARHLPDINSSNALLRSHM---ERAAI------NTPVQGSAADVAMCAMLEINRNS 727

Query: 620 ----NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP--SWAKGLPLKAEGYEAKR 672
                G+ ++L VHDE++ E P         L    M           + L  +G  A+ 
Sbjct: 728 KLRELGWKLLLQVHDEVILEGPSESAQEAKELVIKSMMYPFNGENFLDVELVVDGDYAES 787

Query: 673 Y 673
           +
Sbjct: 788 W 788



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 83/301 (27%), Gaps = 65/301 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAY------AWDDEPVKLWD--RTEQSAMPSD 56
             D E  +   + K           +T  +        + +   +LW         +   
Sbjct: 26  ACDTE-VAEIDVKKESP---VGHGRMTCFSIYCGPSANFGNGKNRLWVDVLDGGDGILEV 81

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------PSSL 109
             +Y  D ++  V HN  F++ +  +  GI  P   +  T  LAR +           SL
Sbjct: 82  FRRYFEDPSIKKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLHDSARRGAKGGYSL 139

Query: 110 KNACL-------ALNF----------SEHLTKMEEGKALIARFCKGSI-DSPPYDCTRAN 151
           +            L             +   K   GKA + +        + P       
Sbjct: 140 EVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKANLKKDGSPGKIKTIPPVDELQR 199

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL--------------------IPLSDGERDLW-LL 190
             +    +  Y   D   T  LF  L                        +     +  +
Sbjct: 200 DGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPWNVVDLKEKGSMYDFYEKYWRPFGEV 259

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERK----KLDEDIVKLTDG-IIRSSRQTYALRMYL 245
              +   G  +D D +  ++++   +++    +  +   K      + +      +R +L
Sbjct: 260 LVQMEADGMLVDCDHLATVEKVARAQQEISVSRFRKWAAKYCPDAAMMNVGSDAQIRQFL 319

Query: 246 F 246
           F
Sbjct: 320 F 320


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 101/365 (27%), Gaps = 86/365 (23%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 GR+  +L     + TGR S      QN P  E+                     
Sbjct: 524 NLSGKSGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 563

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R   IA+ G  L+VAD   +E RVLA +A     + AF  G D +  T    
Sbjct: 564 ------KIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNM 617

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +    + + K                   +V        G D         + ++     
Sbjct: 618 YPHIREAIEK------------------KRVLLEWYPQPGEDKPPVPLLKDAFASERRKA 659

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  +  +         +   K+     +     W  + + VL+  +   +      +   
Sbjct: 660 KMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHT 719

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +                           R  V+  +    S L      + R       
Sbjct: 720 LL--------------------------GRARVFPSLTDASSSLRGH---VERAAI---- 746

Query: 597 LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649
                VQ  + D+    M          + G+ ++L VHDE++ E P         +   
Sbjct: 747 --NTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVD 804

Query: 650 LMTKN 654
            M+K 
Sbjct: 805 CMSKP 809



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 80/296 (27%), Gaps = 61/296 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS--AMPS 55
             D E        +V      +   IT  +        + +    +W D  +     +  
Sbjct: 71  ACDTE----VAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLH 126

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108
           +   +     +  V HN  F+  + +      I    +   T  +AR            S
Sbjct: 127 EFAPFFESPDIKKVWHNYSFDNHVIENY---GISVSGFHADTMHMARLWDSSRRINGGYS 183

Query: 109 LKNAC---LALNFSEHLTKMEEGK-ALIARFCKGSIDSPP-------YDCTRANHVQAWQ 157
           L+        +  +E   K   GK ++   F K  +                    +A +
Sbjct: 184 LEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREARE 243

Query: 158 LFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQTIN 195
            +  Y   D  +T +L+K L                      D   + W     +   + 
Sbjct: 244 PWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRME 303

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
             G  +D   +   +++   E++       K       D    +      LR  LF
Sbjct: 304 TEGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLF 359


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 88/748 (11%), Positives = 184/748 (24%), Gaps = 197/748 (26%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVAH 71
             I   + +      ++   +            +      +L  L      +E V+ +A 
Sbjct: 141 GEICTVSLSAAAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACLA 115
           N  FE     K     +   +     ++                P        LK A   
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 257

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               + +       K  +  F +            A          EY  +         
Sbjct: 258 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQISRYE 317

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L  +   E     +   +   G   D +L  + ++     +++  E I ++       
Sbjct: 318 EWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 374

Query: 235 ------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269
                 S +T  ++  +F    I             +  L                    
Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434

Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297
                                                K+  L  +            LS 
Sbjct: 435 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 494

Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +           GR+      +  + TGR +      QN+PR +  E            
Sbjct: 495 HIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 541

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R+  +   GK L   D +G E R++AW +G++   + F  G D++
Sbjct: 542 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 588

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468
             T +        ++ K++R   K     + Y G     + T  +   +           
Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +++   +   +  +  E      + G         +     G+    +      
Sbjct: 649 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 699

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                                 K   + +  +  +  
Sbjct: 700 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 731

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645
              ++G           S D++                 +HDEI+ E  D P   V    
Sbjct: 732 GVLSHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVEK 765

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  +M + P     +P++AEG    R+
Sbjct: 766 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 793


>gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
 gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
          Length = 516

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/546 (12%), Positives = 146/546 (26%), Gaps = 135/546 (24%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L   S+ E  +  +   +   G   +  +    +E +  +   L+     L  G + S  
Sbjct: 18  LFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFSLS 77

Query: 237 QTYALRMYLFLITGIDLVDMSE-----------------------GTLKSILSHSNITQL 273
            T  +   LF    I + ++++                        T  ++L H +    
Sbjct: 78  STEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHISHHHP 137

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLR----GTLQFYGASRTGRWSGCVFQPQN 329
              LI+     +      ++ L +      R       +        TGR S      QN
Sbjct: 138 LPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVPTGRISMAFPNLQN 197

Query: 330 LPRQERSEEILTQ----------------------TIQALNRGETIADPLGLASDCVRSC 367
           +          ++                        Q       I          +R+ 
Sbjct: 198 ISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVSLRNS 257

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA--NGEDIYVTTYAKAFNTPIDKVS 425
              +NG  L+ AD + +E R+L   + +   I+ F      D++     +      +KVS
Sbjct: 258 FTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDYEKVS 317

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
            E+R   K +   +                G+ +   +  +K                  
Sbjct: 318 DEERNFAKHLVYGIL--------------YGMGINSIASELKVDK--------------- 348

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                             ++  + ++  ++ ++   + + +                   
Sbjct: 349 ---------------EKAKVQLERFKNTYRTLIDFLESIEDRVFIDAY------------ 381

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
                         I     R   +S +    + L     ++ R          ++ Q  
Sbjct: 382 --------------IKTLFGRIRNFSAIHDPKT-LPKDIGKIKRGAR------NSVPQGT 420

Query: 606 SRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWA 658
           + DI    M N             +VL +HDE++ E P T        +   M       
Sbjct: 421 AADITKLAMINIQSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENVVKLN 480

Query: 659 KGLPLK 664
             LP+K
Sbjct: 481 VPLPIK 486


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/538 (14%), Positives = 137/538 (25%), Gaps = 149/538 (27%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E  +  L   ++  G   D  ++ + +  +     KL+ +   L    +        
Sbjct: 201 LFQELPVARLLTLMSVTGAPFDHSIMQRWRSDLEVTVAKLEREAQALVKKEVL-MTSPAQ 259

Query: 241 LRMYLFLITGIDLVDM--SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN----- 293
           +   L+   G+       S  T   +LS          +I      +      ++     
Sbjct: 260 VAALLYDDLGLQPPAGRRSRSTGDEVLSMMVDQHPVVSIIRKHRQVAKLITTYVDTIRSL 319

Query: 294 -------TLSEAVSSDG------------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                   L E                  RL         + TGR S      QN+PR  
Sbjct: 320 PESSPKPGLLEYFRPQNGVSESCNFLGKNRLYTVWNQTM-TVTGRLSSSNPNLQNIPRSH 378

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWI 392
             E                     L    +R   I+   +   LV  D   +E RVLA  
Sbjct: 379 EFE--------------------DLGVISLRKAFISPILDSHCLVSVDYRQVEIRVLAHF 418

Query: 393 AGEDWKIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            G     ++F+ +G DIY    A       + V+KE+R   KV  LAL Y  G  +    
Sbjct: 419 VGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLL--- 475

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                                    A +  +  T  +  K+ + 
Sbjct: 476 -----------------------------------------ARQMGVTTTVAQGFKRQFN 494

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
                + +    +                RR   +    +    +   I           
Sbjct: 495 YAFPELERWMVRVWHAAKGKKYVETICKRRRKIELDGGELTSEAKRFCI----------- 543

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYD---- 623
                                       +I+Q  + DI+   M        +  +     
Sbjct: 544 ---------------------------NSIIQGSAADIMKSAMVQIAHALDEAQWKRGRP 576

Query: 624 -IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKG----LPLKAEGYEAKRY 673
            ++L++HDE V          +G  L   M     P   +     +PL+        +
Sbjct: 577 QLLLSIHDEFVLSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNW 634


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 88/748 (11%), Positives = 184/748 (24%), Gaps = 197/748 (26%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVAH 71
             I   + +      ++   +            +      +L  L      +E V+ +A 
Sbjct: 135 GEICTVSLSAAAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 194

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACLA 115
           N  FE     K     +   +     ++                P        LK A   
Sbjct: 195 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 251

Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               + +       K  +  F +            A          EY  +         
Sbjct: 252 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQISRYE 311

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + L  +   E     +   +   G   D +L  + ++     +++  E I ++       
Sbjct: 312 EWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 368

Query: 235 ------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269
                 S +T  ++  +F    I             +  L                    
Sbjct: 369 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 428

Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297
                                                K+  L  +            LS 
Sbjct: 429 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 488

Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +           GR+      +  + TGR +      QN+PR +  E            
Sbjct: 489 HIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 535

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R+  +   GK L   D +G E R++AW +G++   + F  G D++
Sbjct: 536 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 582

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468
             T +        ++ K++R   K     + Y G     + T  +   +           
Sbjct: 583 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 642

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +++   +   +  +  E      + G         +     G+    +      
Sbjct: 643 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 693

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                                 K   + +  +  +  
Sbjct: 694 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 725

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645
              ++G           S D++                 +HDEI+ E  D P   V    
Sbjct: 726 GVLSHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVEK 759

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  +M + P     +P++AEG    R+
Sbjct: 760 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 787


>gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 86/717 (11%), Positives = 178/717 (24%), Gaps = 168/717 (23%)

Query: 9   ETRSPQPLPKVGVWAYAE--QAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYLR 62
           ET         G   +       ++  +  +      + V +      S   S L++ L 
Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFILRWKDDVFVL---HASTALSFLVRVLE 352

Query: 63  D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           +   V  V  N+    +L       ++ +       +++      +            + 
Sbjct: 353 ELSGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAFTDYDVLLQS 412

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +     A        ++                 L+G+   +           L    
Sbjct: 413 CQQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQLGTQ---------GLLPAFL 463

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYA 240
             E+ + LL   +   G+ ++L  V   +       ++L     K +      + +    
Sbjct: 464 KQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEE 523

Query: 241 LRMYLFLITGIDL------------------VDMSEGTLKSILSHSNITQLAKDLILNRL 282
            RM ++ +  +                          T +  L           L++   
Sbjct: 524 CRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR 583

Query: 283 ASSGSAILKLNTLSEAVSS---------DGRL-----------------RGTLQFYGASR 316
            ++         + E             D R+                        G + 
Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 642

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QNLPR                     ++P        R C     G  L
Sbjct: 643 TGRLSCVEPNLQNLPR------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLTL 690

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +  D   IE RV+A ++ +   + A  N  D++       F      V+ E+R + K + 
Sbjct: 691 LSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKS--PVNVEERTLAKRVV 748

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y  G                                                A + 
Sbjct: 749 FGMLYGAGP--------------------------------------------RTLATQM 764

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +       V   ++A +  + +  + + +                              
Sbjct: 765 GVPMERALHVMSLFKASYPQIERYQRRVIDQCRT-------------------------- 798

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           D  +   + R     D+            +             +++Q  + D++  GM  
Sbjct: 799 DGFVRTMTGRIRSLPDINDRVMAKRMYAERQ---------AFNSVIQGSAADVMKLGMLA 849

Query: 617 ATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
             ++          ++  +HDEIV   P      V  L S  M    S    +PL+ 
Sbjct: 850 VERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/748 (12%), Positives = 186/748 (24%), Gaps = 197/748 (26%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVAH 71
             I   + +      ++   +            +      +L  L      +E V+ +A 
Sbjct: 141 GEICTVSLSAAVHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNAC-L 114
           N  FE     K     +   +     ++                P        LK A   
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKE 257

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               + +       K  +  F +            A          EY  +      +  
Sbjct: 258 IFGVTMNDFSALLKKYKVDFFDEIDASKGEGLLYSAEDADYALQHYEYWSQIASQIPQYE 317

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR- 233
           + L  +   E     +   +   G   D +L  + ++     +++  E I ++       
Sbjct: 318 EWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQVAKETFNV 374

Query: 234 -----SSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269
                 S +T  ++  +F    I             +  L                    
Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434

Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297
                                                K+  L  +            LS 
Sbjct: 435 SIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 494

Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +           GR+      +  + TGR +      QN+PR +  E            
Sbjct: 495 HIVGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 541

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R+  +   GK L   D +G E R++AW +G++   + F  G D++
Sbjct: 542 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 588

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468
             T +     P D++ K++R   K     + Y G     + T  +   +           
Sbjct: 589 RRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
            +    +++   +   +  +  E      + G         +     G+    +      
Sbjct: 649 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 699

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                      +                                 K   + +  +  +  
Sbjct: 700 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 731

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645
               +G           S D++                 +HDEI+ E  D P   V    
Sbjct: 732 GVLAHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAAEK 765

Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            +  +M + P     +P++AEG    R+
Sbjct: 766 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 793


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 87/654 (13%), Positives = 175/654 (26%), Gaps = 115/654 (17%)

Query: 30   ITLCAYAWDDEPVKLW-----DRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERIL 79
            I   ++   D  V        DR     +P      +L + L  + +  V H+   +  +
Sbjct: 1471 IAGLSFCLADNVVYYMNMQNDDRATGQGVPTILKVQELCKLLARKDLTIVMHDGKEQLKI 1530

Query: 80   FKKTLGIDIPS-KRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEG--KALIAR 134
              K +        +     V         ++   N C              G  +   + 
Sbjct: 1531 LLKAIPQLQKICAKLEDPKVANWLLQPDKTMTFYNMCQTFAPECTALADLCGSGRGYSSY 1590

Query: 135  FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                S    P             +     +          + L    D E  + L    +
Sbjct: 1591 GLDTSSAILPKIRASIEACVTVHILKGQTENLGRI--GSGQLLKFFHDIEMPIQLTLCHM 1648

Query: 195  NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
               G+      + +L + +    +KL+  I +   G   +   +  +   L    G+   
Sbjct: 1649 EFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQH-GSRFNLGSSQTVAKVL----GLHRK 1703

Query: 255  DMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
                  T + +L   N       LIL     +G     +  L +   +D R+ G    Y 
Sbjct: 1704 ANGRVTTSRQVLEKINSP--ISQLILGYRKVAGLLAKSIQPLLKCCEAD-RIHGQSITYT 1760

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372
            A  TGR S      QN+ ++                   I           R   +    
Sbjct: 1761 A--TGRISMTEPNLQNVAKE-----------------FCIQVGSDALRIACRLPFVPKDE 1801

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
             + L+ AD   +E R+LA ++ +   ++   + +D+++   A        +VS++ R   
Sbjct: 1802 DRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVSQDLRNST 1861

Query: 433  KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
            K +   + Y  G +          L+  +    + S    + ++    +   +       
Sbjct: 1862 KHVCYGIVYGMGMRSLAE-----SLNCSEQEARMISEQFHQAYKGIREYTSRVVKFARNQ 1916

Query: 493  AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
               + + G    L           +    + L               +            
Sbjct: 1917 GFVETITGRRRYLD---------NINSDEEQLKNQAERQAINSTIQGSA----------- 1956

Query: 553  RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                                     S +      + R   Y  KL               
Sbjct: 1957 --------------------ADIAKSAILKMEKNIER---YRDKLV-------------- 1979

Query: 613  GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
                      D+++ +HDE++ E P      +  + SL M         +PLK 
Sbjct: 1980 ----LGDQSVDLIMHLHDELIFEVPAAKAKKIAKVLSLTMENCVK--LSVPLKV 2027


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/749 (12%), Positives = 184/749 (24%), Gaps = 197/749 (26%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVA 70
           Q  I   + +      ++   +            +      +L  L      +E V+ +A
Sbjct: 140 QGEICTVSLSATAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIA 199

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACL 114
            N  FE     K     +   +     ++                P        LK A  
Sbjct: 200 VNLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATK 256

Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                + +       K  +  F +            A          EY  +        
Sbjct: 257 HIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQIPRY 316

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            + L  +   E         +   G   D +L  + ++     +++  E I ++      
Sbjct: 317 EEWLHKI---EMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFN 373

Query: 234 S------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN--------------- 269
                  S +T  ++  +F    I             +  L                   
Sbjct: 374 IDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKY 433

Query: 270 ---------------------------------ITQLAKDLILNRLASSGSAILKLNTLS 296
                                                 K+  L  +            LS
Sbjct: 434 LGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLS 493

Query: 297 EAV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +           GR+      +  + TGR +      QN+PR +  E           
Sbjct: 494 SHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF---------- 541

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R+  +   GK L   D +G E R++AW +G++  I+ F  G D+
Sbjct: 542 --------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDM 587

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVK 467
           +  T +        ++ K++R   K     + Y G     + T  +   +          
Sbjct: 588 HRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQI 647

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             +    +++   +   +  +  E      + G         +     G+    +     
Sbjct: 648 VNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGS 698

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                       +                                 K   + +  +  + 
Sbjct: 699 AERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQ 730

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV--- 644
                +G           S D++                 +HDEI+ E  D P   V   
Sbjct: 731 EGVLAHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVE 764

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  +M + P     +P++AEG    R+
Sbjct: 765 KQIKQVMEQPPVPGFPVPIEAEGSVGYRW 793


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 110/415 (26%), Gaps = 89/415 (21%)

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                   L       S  +   L      +S D GR+  +L     + TGR S      
Sbjct: 546 EACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNL 603

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN P  E+                            +R   +A+ G  L+VAD   +E R
Sbjct: 604 QNQPALEKDRY------------------------KIRQAFVAAPGNSLIVADYGQLELR 639

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA +A     + AF  G D +  T    +    D V +                   KV
Sbjct: 640 ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKV 681

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G +         +        +  +  +         A   K+     +   
Sbjct: 682 LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 741

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           K W    + VL       E      +    +                           R 
Sbjct: 742 KLWYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRS 775

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621
             + ++    S          R            VQ  + D+    M    +       G
Sbjct: 776 RRFPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELG 826

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
           + ++L VHDE++ E P        ++    M+K    +    + L  +   A+ +
Sbjct: 827 WRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 881



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 81/313 (25%), Gaps = 64/313 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E         V          +   +           + +    +W D  +    +
Sbjct: 138 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 193

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 194 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 250

Query: 107 SSLKNACLAL-----------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            SL+                    +   K   G   I +    +      +         
Sbjct: 251 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDG-SAGKIISMEPVEVLQRDD 309

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGER----------------DLWL----LDQTIN 195
            +++  Y   D  +T  L++ L    + +                 + W     L   + 
Sbjct: 310 REMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKME 369

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLFLITG 250
             G  +D   + +++++   +RK   +   K       D    +      +R   F   G
Sbjct: 370 TAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFF--GG 427

Query: 251 IDLVDMSEGTLKS 263
           I+       TL  
Sbjct: 428 IENRCKPGETLPK 440


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/534 (12%), Positives = 145/534 (27%), Gaps = 74/534 (13%)

Query: 21   VWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSD----LLQYLRDETVMCVAHNS 73
             + Y     +     +W  + V        TE      +    L   L D +V     N+
Sbjct: 1742 AYVY-GDRKLCGIVISWGTKAVYYMPFGITTETKITIKERMSFLRDILSDASVTLRCFNA 1800

Query: 74   LFE-RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLT----KM 125
              +   +F     ++ P+  ++                                    + 
Sbjct: 1801 K-DVYKMFYICCEVE-PNCSFLDPKAGDWLMNAETCNKGYTELAAQYFPRGIDIANACEN 1858

Query: 126  EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
              G  ++ R  +    +          V+A + F                 L    D E 
Sbjct: 1859 NYGTYVLTRDARAGAKALLAWYVANAVVEAVKEFSP-------------ISLSAYKDIEM 1905

Query: 186  DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               L+   +  RG+ I+++ + +L  +I  +  +++E+  +               ++  
Sbjct: 1906 PTILILANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYSSKEVSQVLG 1965

Query: 246  FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                G    + +           +      +L+      +      +  L +    + R+
Sbjct: 1966 LNKRGRACTNKNA--------LKSCENPISNLVTLWRKLTTVQTKIVFPLLQLERKNNRI 2017

Query: 306  RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
             G    Y  + TGR S      Q +PR  +S+                          VR
Sbjct: 2018 HGNCITY--TVTGRVSMHEPNLQTIPRDFKSDISGCIL-------------------SVR 2056

Query: 366  SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
               + ++G  ++ AD   +E R+LA  + +    K      DI+ +  A+   T  ++V 
Sbjct: 2057 MAFVPASGNIMLSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVD 2116

Query: 426  KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
             + R   K +  A+ Y  GAK          L   +        +    ++        +
Sbjct: 2117 DDMRQRAKQLCYAMIYGMGAKSLAET-----LSATESEAKDYLEAFMGTYKGIRVWLTGV 2171

Query: 486  QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             +Q         +            R    G+      +               
Sbjct: 2172 CEQARVEGFVSTIANR---------RRILPGINSKISAVKSQAERQAVNTKVQG 2216


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/633 (12%), Positives = 182/633 (28%), Gaps = 145/633 (22%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +     +  N      +F++   I      +  T +                  
Sbjct: 379 LRPILENNKYYKIGKNLKNVFHIFQEY-NILFRGIHFDTTII----------------NY 421

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELF 174
            +  +  K ++ + LI ++ K   +             + + +++  + K   +  RE F
Sbjct: 422 YYKLNYKKNKKYQNLIYKYKKNKKEKSFKRKFIIMQESLISLKIYFLFKKNIKKKKRENF 481

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + +      +  L  +   I + G  I    +LK Q+   ++  K  +  +        +
Sbjct: 482 QLI------DMSLLPILAEIENNGVLI-KKKILKKQKKNHEKTLKKLKKKIFKITKEKFN 534

Query: 235 SRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
              +  L+  LF    +  +  ++     T + +L   +   +   +IL           
Sbjct: 535 INSSKQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKLSKIHILPKIILQFRLIKKIINT 594

Query: 291 KLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            L  L ++++    R+  T      + TGR S      QN+P                  
Sbjct: 595 YLRNLIKSINNKTNRIHTTYNQIN-TSTGRLSSKNPNLQNIP------------------ 635

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   I      L+ AD + IE R++A  + +   IK     +DI+
Sbjct: 636 ------IKTKIGRKLRIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIH 689

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
           ++T +  FN P++                                            K  
Sbjct: 690 ISTASHIFNKPLE--------------------------------------------KIK 705

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
               +  +  +  +         + K  +     + +   +  K+  + +  K+  +   
Sbjct: 706 KYHRNIAKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAK 765

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                         I     R+L   ++     YL  +  +   
Sbjct: 766 KRGY--------------------------IKTLFKRKLYIPNINSKNIYLKNSAKRFC- 798

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYF 642
                      ++Q  + DI+ + M                I++ +HDE++ E  +    
Sbjct: 799 --------INLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIHDELIFEIKEKKKD 850

Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
            +   +  +M  N      +PL       K ++
Sbjct: 851 KIIDVIKKIMENNTKLI--IPLYITTKIGKNWK 881


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 95/383 (24%), Gaps = 106/383 (27%)

Query: 297  EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 DGR+  +L     + TGR S      QN P  E+                     
Sbjct: 741  NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 780

Query: 357  LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   +R   +AS G  LVVAD   +E R+LA + G    ++AF  G D +  T    
Sbjct: 781  ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 834

Query: 417  FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
            +    + V   Q                           G D         +  +     
Sbjct: 835  YPHVREAVENGQV------------------ILEWHPEPGEDKPPVPLLKDAFGSERRKA 876

Query: 477  QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            +  +  +         +   K+     +     W    Q V +  +   +          
Sbjct: 877  KMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLT 936

Query: 537  SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
             +                           R   +   K          + + R       
Sbjct: 937  LL--------------------------GRSRRFPASKS-----RAQRNHIQRAAI---- 961

Query: 597  LTENIVQAISRDILCEGMKNA------TKNGYDIVL------------------TVHDEI 632
                 VQ  + D+    M          K G+ ++L                   +HDE+
Sbjct: 962  --NTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQWSLLDWKLSNKGNLYWKQIHDEV 1019

Query: 633  VSETPDTPYFSVGTL-CSLMTKN 654
            + E P         +    M+K 
Sbjct: 1020 ILEGPIESAEIAKDIVVDCMSKP 1042



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 62/297 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55
             D E        +V      +   +   +        + +    +W D        + +
Sbjct: 290 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 345

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSL 109
           +   Y  D  +  V HN  F+  + +   GI+I       T  +AR            SL
Sbjct: 346 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 403

Query: 110 KNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +        L             +   K   GK  + +                   +  
Sbjct: 404 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIP-PVEELQREDR 462

Query: 157 QLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW----LLDQTI 194
           + +  Y   D  +T +L++ +                    + D   + W     L   +
Sbjct: 463 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 522

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
              G  +D + + +++++   E++               D    +      LR   F
Sbjct: 523 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 579


>gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 924

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/717 (11%), Positives = 178/717 (24%), Gaps = 168/717 (23%)

Query: 9   ETRSPQPLPKVGVWAYAE--QAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYLR 62
           ET         G   +       ++  +  +      + V +      S   S L++ L 
Sbjct: 293 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVFVL---HASTALSFLVRVLE 349

Query: 63  D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           +   V  V  N+    +L       ++ +       +++      +            + 
Sbjct: 350 ELSGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAFTDYDVLLQS 409

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +     A        ++                 L+G+   +           L    
Sbjct: 410 CQQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQLGTQ---------GLLPAFL 460

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYA 240
             E+ + LL   +   G+ ++L  V   +       ++L     K +      + +    
Sbjct: 461 KQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLDE 520

Query: 241 LRMYLFLITGIDL------------------VDMSEGTLKSILSHSNITQLAKDLILNRL 282
            RM ++ +  +                          T +  L           L++   
Sbjct: 521 CRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLRLLAPHHELPRLLIAYR 580

Query: 283 ASSGSAILKLNTLSEAVSS---------DGRL-----------------RGTLQFYGASR 316
            ++         + E             D R+                        G + 
Sbjct: 581 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 639

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QNLPR                     ++P        R C     G  L
Sbjct: 640 TGRLSCVEPNLQNLPR------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLTL 687

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +  D   IE RV+A ++ +   + A  N  D++       F      V+ E+R + K + 
Sbjct: 688 LSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKS--PVNVEERTLAKRVV 745

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y  G                                                A + 
Sbjct: 746 FGMLYGAGP--------------------------------------------RTLATQM 761

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +       V   ++A +  + +  + + +                              
Sbjct: 762 GVPMERALHVMSLFKASYPQIERYQRRVIDQCRT-------------------------- 795

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           D  +   + R     D+            +             +++Q  + D++  GM  
Sbjct: 796 DGFVRTMTGRIRSLPDINDRVMAKRMYAERQ---------AFNSVIQGSAADVMKLGMLA 846

Query: 617 ATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
             ++          ++  +HDEIV   P      V  L S  M    S    +PL+ 
Sbjct: 847 VERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 901


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 100/391 (25%), Gaps = 88/391 (22%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             +  L     ++ R+  +L     + TGR S      QN P  E+              
Sbjct: 314 TFILPLQSVADAEQRVHCSLNLN--TETGRLSSRNPNLQNQPALEKDVYF---------- 361

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R   +A  G  L+V+D   +E RVLA +      I+AF  G D +
Sbjct: 362 --------------IRKAFMAKPGNILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFH 407

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T    ++   + ++K            L +                            
Sbjct: 408 SRTALSMYDYIKEDIAK--------GTCLLEWDSSKG------------EPPAPLLKHKY 447

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
           ++     +  +  L              +     + V   W  +   V +  +   +   
Sbjct: 448 ASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERPEVKRWQELTIQTAK 507

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                                               R     D+     +      +   
Sbjct: 508 ETG--------------------------FTRTLMGRYRPLPDINSKNKWKEGHACRA-- 539

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI+   M    K       G++++L +HDE++ E P      
Sbjct: 540 -------AINTPIQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENVAE 592

Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
               L   M    +    + L  +   A  +
Sbjct: 593 AKKCLVEDMMHPFARPLLVDLVVDCNAAPSW 623



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 50/198 (25%), Gaps = 48/198 (24%)

Query: 97  SVLARTNGLP------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSI--DSPPYDCT 148
             +AR            SL++    L   +   K   GK  I R        D PP    
Sbjct: 1   MHMARLWESSRVGKGSYSLESLSEELYIRKRPYKEIFGKPHIKRDGMQGKTIDVPPVIVA 60

Query: 149 RANHVQA---------WQLFGEYCKRDVEATRELFKRLIPLSDG---------------- 183
            +                 + +Y   D EAT  + K L  L                   
Sbjct: 61  FSLSPHPQDLQRGSATRSAWIDYSAFDAEATWHVRKELESLLREMFWTSESLNGALSELS 120

Query: 184 ERDLW--------LLDQTINDRGYRIDLD-LVLKLQELIAQERKKLDEDIVKLTDGI--- 231
             D +         L   +  RG  +D+   + +++       +K               
Sbjct: 121 MWDFYRRYYRDFGQLLVNMERRGIHVDVARHLPEIEREARAALEKARNQFKSWAVAEGGS 180

Query: 232 ---IRSSRQTYALRMYLF 246
                +   T  ++  LF
Sbjct: 181 DLLFMNVHSTAQIQQLLF 198


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 110/415 (26%), Gaps = 89/415 (21%)

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327
                   L       S  +   L      +S D GR+  +L     + TGR S      
Sbjct: 221 EACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNL 278

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           QN P  E+                            +R   +A+ G  L+VAD   +E R
Sbjct: 279 QNQPALEKDRY------------------------KIRQAFVAAPGNSLIVADYGQLELR 314

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           +LA +A     + AF  G D +  T    +    D V +                   KV
Sbjct: 315 ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKV 356

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                   G +         +        +  +  +         A   K+     +   
Sbjct: 357 LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 416

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           K W    + VL       E      +    +                           R 
Sbjct: 417 KLWYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRS 450

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621
             + ++    S          R            VQ  + D+    M    +       G
Sbjct: 451 RRFPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELG 501

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673
           + ++L VHDE++ E P        ++    M+K    +    + L  +   A+ +
Sbjct: 502 WRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 556


>gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/717 (12%), Positives = 178/717 (24%), Gaps = 168/717 (23%)

Query: 9   ETRSPQPLPKVGVWAYAE--QAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYLR 62
           ET         G   +       ++  +  +      + V +      S   S L++ L 
Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVFVL---HASTALSFLVRVLE 352

Query: 63  D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           +   V  V  N+    +L       ++ +       +++      +            + 
Sbjct: 353 ELSGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAFTDYDVLLQS 412

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +     A        ++                 L+G+   +           L    
Sbjct: 413 CQQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQLGTQ---------GLLPAFL 463

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYA 240
             E+ + LL   +   G+ + L  V   +       ++L     K +      + +    
Sbjct: 464 KQEKRISLLCAAMKLNGFPVKLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEE 523

Query: 241 LRMYLFLITGIDL------------------VDMSEGTLKSILSHSNITQLAKDLILNRL 282
            RM ++ +  +                          T +  L           L++   
Sbjct: 524 CRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR 583

Query: 283 ASSGSAILKLNTLSEAVSS---------DGRL-----------------RGTLQFYGASR 316
            ++         + E             D R+                        G + 
Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGECSDKKDDTPVKWVTLHPNFVQEG-TD 642

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGR S      QNLPR              +      ++P        R C     G  L
Sbjct: 643 TGRLSCVEPNLQNLPR------------SKVIADNDNSEPYEAEMATFRRCFAVPIGLTL 690

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +  D   IE RV+A ++ +   + A  N  D++       F      VS E+R + K + 
Sbjct: 691 LSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKS--PVSVEERTLAKRVV 748

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             + Y  G                                                A + 
Sbjct: 749 FGMLYGAGP--------------------------------------------RTLATQM 764

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
            +       V   ++A +  + +  + + +                              
Sbjct: 765 GVPMERALHVMSLFKASYPQIERYQRRVIDQCRT-------------------------- 798

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           D  +   + R     D+            +             +++Q  + D++  GM  
Sbjct: 799 DGFVRTMTGRIRSLPDINDRVMAKRMYAERQ---------AFNSVIQGSAADVMKLGMLA 849

Query: 617 ATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
             ++          ++  +HDEIV   P      V  L S  M    S    +PL+ 
Sbjct: 850 VERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 103/393 (26%), Gaps = 95/393 (24%)

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
             L +L E V +  R+  +L     + TGR S      QN P  E+              
Sbjct: 457 TFLTSLQERVDNKSRVHCSLNLN--TETGRLSSRGPNLQNQPALEKDTYQ---------- 504

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R    AS G  L+VAD   +E R+LA + G    I+AF  G D +
Sbjct: 505 --------------IRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFH 550

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             T    F+              KV           +         G             
Sbjct: 551 SRTAMDMFD----------YVKAKVD--------SGEALLEWDYAKG--DPPKPLVKDLF 590

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
           ++     +  +  +         +    +     E + KAW      V      +     
Sbjct: 591 ASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQEAEEMLKAWYKARPEVDVWQTQVKLTAR 650

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                   +                           R     + K           Q  R
Sbjct: 651 NHGYTRTLM--------------------------GRYRDLPEAKSKRQKF---AKQAER 681

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643
                       +Q  + DI    M            G+ ++L VHDE++ E P+     
Sbjct: 682 ASI------NTPIQGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAKE 735

Query: 644 V-GTLCSLMTKNPSWAKGL-----PLKAEGYEA 670
               + + M +   W  GL     PL  +G   
Sbjct: 736 AFDEVLNNMQEP--WVFGLMKTAVPLLVDGSYT 766



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 84/287 (29%), Gaps = 51/287 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVK--LWDRTEQSA-M 53
             D E      L  VG         +T  +        Y   + P      D  + +A +
Sbjct: 27  ACDTE-VMAIDLKSVGP---VGNGYVTCASVYSGPDFDYGLGEGPGSCLWIDNLDDAAGI 82

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------- 105
             +   +  +   + V HN  F+R +     GID+       T  +AR            
Sbjct: 83  LQEFKAWFENPRFLKVWHNYGFDRHVM-WNEGIDVQGLG-GDTMHMARLQDTCRSKMAKG 140

Query: 106 -PSSLKNA-CLALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              SL+      L+  +   K   G   L     +G++   P   +     ++  ++ +Y
Sbjct: 141 GGYSLEALTADLLSRRKQPMKELFGVHRLRKDGSEGALVDIPPVESMQRDPESRSMWIKY 200

Query: 163 CKRDVEATRELFKRLIPLSDG----------------ERDLWLLDQTINDRGYRID-LDL 205
              D E T  L + L                       R    +   +  RG R++  D 
Sbjct: 201 SCYDAEGTWLLREELEKRLKMKPWIGNKNLWDYYFLHMRPFAEVLTDMERRGVRVNAKDY 260

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR------SSRQTYALRMYLF 246
           +  ++    ++R    +   +     I       +      L+   F
Sbjct: 261 LFNVERKAREDRVHHSKIFREWAASKIGPDGLALNLSSATQLQALFF 307


>gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
          Length = 1762

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1054 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1113

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1114 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1172

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 1173 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1232

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 1233 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1287

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 1288 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1346

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 1347 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1406

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 1407 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1464

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 1465 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 1524

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 1525 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 1579

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 1580 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 1630

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 1631 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 1682

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 1683 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVVEEDV 1723

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 1724 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 1754


>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
          Length = 2724

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 2016 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 2075

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 2076 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2134

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 2135 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2194

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 2195 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2249

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 2250 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2308

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 2309 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2368

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350
             + A  TGR +      QN+PR                    + +L        +G    
Sbjct: 2369 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2426

Query: 351  --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                    E  AD     S  +R   +   G  ++ AD + +E R+LA ++ +   I+  
Sbjct: 2427 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2486

Query: 403  ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              G D++ +  A+      + V  + R   K +   + Y  GAK          + +++ 
Sbjct: 2487 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2541

Query: 463  SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                   S    +                      ++G          R    G+     
Sbjct: 2542 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2592

Query: 523  DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                             +         V  + + +                 G    +  
Sbjct: 2593 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2644

Query: 583  ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641
            +    L R+R   G      +                  G   +L +HDE++ E  +   
Sbjct: 2645 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVVEEDV 2685

Query: 642  FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
              V  +    M         + LK +      +
Sbjct: 2686 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2716


>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
          Length = 1781

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/681 (12%), Positives = 179/681 (26%), Gaps = 166/681 (24%)

Query: 24   YAEQAVITLCAYAWDDEPVKLWDRTE------QSAMPSDLLQYLRDETVMCVAHNSLFER 77
            Y E+  I   A AW    V      E        A  S L  +L     + V    +++ 
Sbjct: 1213 YKEKNSILGVAVAWSCLCVNYIQLRERFDSNLDLAKVSKLKSWLEALIRLKVEF-IVYDI 1271

Query: 78   IL-------FKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEE 127
                         L   +    +    +            SL       +     TKM  
Sbjct: 1272 RSTANDLRPLFHHL---LNEMLFRDVDLCQWLLEPSNSSVSLPKLSKMYSQQGSPTKMYR 1328

Query: 128  GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            G+  I   C                +  +    +   +         + L P  D E  +
Sbjct: 1329 GREKILHEC-------------CALLDIFHQLKQRLSK--------EELLQPFVDVEMPM 1367

Query: 188  WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                  +   G   D      + +++    K L+E   +L       +      ++   L
Sbjct: 1368 VATMLRMEQIGIAFDRSNCELILQILRNHLKMLEEAAHRLAGRSFSLTSTKEVSKIVASL 1427

Query: 248  ITGIDLVD-------MSEG------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               I+  +       + +       +  S++    I  L + ++  R  S+    +    
Sbjct: 1428 NLCIEEKNPQSFINPLKKKFQPLSVSKASLIKLGRIHPLPRVVVEFRKVSAIIQTIICPL 1487

Query: 295  LSE---AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            L      VS   R+ G  +F  A  TGR +      Q++PR                   
Sbjct: 1488 LQASTFHVSGVERIAGECEFRNA--TGRVNIVQPNLQHIPRP------------------ 1527

Query: 352  TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYV 410
                        VRS   A+ G  L+ AD + +E R+LA ++ +       +    D++ 
Sbjct: 1528 --FSLSDGRMINVRSAFHAATGTTLLSADYSQLELRILAHLSEDTGLCSILSKPNGDVFR 1585

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
               +       + V+ ++R   K +                    G+             
Sbjct: 1586 GIVSVWKKKKQEDVTDDERQQAKQIC--------------YGIVYGMG------------ 1619

Query: 471  TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                  A + ++     +L   ++ + +  + +   +       
Sbjct: 1620 ------------------CKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRS 1661

Query: 531  VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                         ++    RR     +  + +      +Q  R+
Sbjct: 1662 KG--------------------------FVITLLGRRRFLPSINSNNAAQR---AQAERQ 1692

Query: 591  RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                       +Q  + D++   +    ++         +V  +HDE++ E P       
Sbjct: 1693 A------VNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVERA 1746

Query: 645  GTLCS-LMTKNPSWAKGLPLK 664
              +    M         +P+ 
Sbjct: 1747 ARVVRHCMETAIPMKIRIPVA 1767


>gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 236

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 75/252 (29%), Gaps = 37/252 (14%)

Query: 96  TSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           T + +           + +     L       +   GK                      
Sbjct: 1   TMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQL---------------TF 45

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYR 200
           +  A +  G Y   D + T +L  ++ P               E  L  +   +   G +
Sbjct: 46  NQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVK 105

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258
           ID  ++ K  E I     +L++    +  G   +   T  L+  LF   GI  +  +   
Sbjct: 106 IDPAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGG 164

Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315
              T + +L    +      +IL     +       + L   ++   GR+  +      +
Sbjct: 165 APSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-T 223

Query: 316 RTGRWSGCVFQP 327
            TGR S    +P
Sbjct: 224 ATGRLSSTDTEP 235


>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
 gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
          Length = 1648

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 137/524 (26%), Gaps = 107/524 (20%)

Query: 173  LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE-----DIVKL 227
            +   L  + + E     +  T+   G R +   +    +LI  +  ++        I+  
Sbjct: 1168 INLELRQMFEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQILDG 1227

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                + ++     L      + G +    ++  L+ +             I         
Sbjct: 1228 KKIDVSNNDHVALLLFDKLKLKGTER-KTNKEILEKLKKLYPDKSYIMKQISEYRYLLNI 1286

Query: 288  AILKLNTLSEAV--SSDGR-LRGTLQFYGAS-RTGRWSGCVFQPQNLPRQERSEEILTQT 343
                +  +   +    D +  R        +  TGR S      QN+P            
Sbjct: 1287 KTHHIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIPND---------- 1336

Query: 344  IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK--IKA 401
                   +       + +  +RS  I  NG  +V  D   IE R+LA ++ +     I +
Sbjct: 1337 ----IDIKDPFSQKSIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTLSDILS 1392

Query: 402  FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
                +             P + V    R++ K +   + Y  G++               
Sbjct: 1393 NTERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSG----------- 1441

Query: 462  FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                 K  ++  +          ++                 E  K+ +  K+QG+ Q  
Sbjct: 1442 -----KMFNSENEDFMLRPGEDRIEA---------------AERYKQNFFEKYQGLKQYK 1481

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
              +            S S +R  +         +                          
Sbjct: 1482 DFVENHLVEKHYVETSYSRKRFIHDICSDDSSKRAAARRA-------------------- 1521

Query: 582  TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---------KNGYDIVLTVHDEI 632
                               + Q  + DI+   M             +    ++L +HDE+
Sbjct: 1522 ---------------ALNTVSQGSASDIMKIVMLGIYSFMRHFNKKEERAYMLLQIHDEL 1566

Query: 633  VSETPDTPYFSVGTL---CSLMTKNPSWAKGLPLKAEGYEAKRY 673
            + E  +    +   +    ++M         +PL  +      +
Sbjct: 1567 LFEVREDSLSTF--IYCTKNIMQNTDKKLL-VPLPVKVQIGDSW 1607


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 87/645 (13%), Positives = 174/645 (26%), Gaps = 105/645 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D+ET     +P   + A        L   + +      W         + L + L 
Sbjct: 4   YIALDLETEQVARMPHGKIHA--------LFLASNNGAEFYPWGLAA----AAVLEKLLT 51

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V  N+ ++  +  +  G+DIP  R++ T VLA           +  +   S   
Sbjct: 52  DPDVIFVIQNAAYDVWVL-RHHGVDIPPGRYVDTMVLAHCVNPQQG-DYSLESYGRSVDD 109

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            K++    ++           P       +         Y  +DV  T + +  L+P  +
Sbjct: 110 EKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPI----MERYGLQDVRLTLKWWGELLPHLE 165

Query: 183 GERDLWLLDQTINDR----------GYRIDLD-LVLKLQE----------LIAQERKKLD 221
            +  L      I+            G  ID    +    E            A+   K+ 
Sbjct: 166 RDARLADSYYNIHLPAVETTISLHGGLYIDRKATLKAATELMGDIEEGYLEFARRYPKVY 225

Query: 222 EDIVKLTDGII-------------RSSRQTYALRMYLFLITGID--------LVDMSEGT 260
           +                        + +    +   L+++  +             S+  
Sbjct: 226 KMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGKPVTSQDV 285

Query: 261 LKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           LK +++        K+      +         +L  L E V   G ++G     G ++T 
Sbjct: 286 LKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGFVKGNWYQTG-TQTF 344

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R+S      QN   +                              VR C     G  + +
Sbjct: 345 RYSSSSPNMQNFSTRHPK-----------------------WGKRVRECFTPPPGYVMFM 381

Query: 379 ADLAGIEARVLAWI----AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE---QRAI 431
            DL+ IE  ++AW     AG+    +    G D +       +    +    E    R  
Sbjct: 382 GDLSQIELAIVAWYLEILAGDSAMAEGNRQGRDAHDVNTENWYGVTRESNPDEFKQCRPR 441

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP- 490
            K    A  Y      ++ +A   G   ++    +++          +        Q   
Sbjct: 442 AKNGAFAANYGA---KYRRLAFTIGCSFEEAKDILETVERATQITPLKQLVWDTMRQSRD 498

Query: 491 ----EFAVKDKLIGTACELVKKAWRAKHQGVLQL----WKDLTEGFACVVQEGGSISARR 542
               +     +             R  + G+        +         + +GG  S  R
Sbjct: 499 VLPVQVPYSWRKTTKGFLYDCLNTRLFYPGIDSKERYERESSERKAFNALAQGGCASILR 558

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                 L   +        L     + Y   +     +     + 
Sbjct: 559 KLCNQSLPYIQAGEGWFAGLVHDEAIGYVKEQYADETIIHLNREW 603


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 85/678 (12%), Positives = 167/678 (24%), Gaps = 175/678 (25%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + V ++       +   + + L    V  V  N+    +           +       ++
Sbjct: 323 DDVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLPLLSYKQGKFFTSCVSDVRLM 380

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                  +                + + G    L A  CKGS ++               
Sbjct: 381 TWMLEPSADTAEFADYDKL-LQSYQQQIGLPAGLNAAECKGSKEAV-SHRVFYMEPLYRM 438

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           L+G                L      E+ + ++   +   G+ ++L  V   +   A++ 
Sbjct: 439 LYGR---------LGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKM 489

Query: 218 KKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDL------------------VDMSE 258
           +KL  +   +       + +     R+ L+ +  +                        +
Sbjct: 490 EKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGK 549

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DG---------- 303
             T +  L           +++     +      +    E        DG          
Sbjct: 550 LSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSITEQ 609

Query: 304 -----------------RLRGTLQFYGASRTGRWSGCVFQPQNLPR-------------- 332
                            +L   L   G + TGR +      Q LPR              
Sbjct: 610 GKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTN 668

Query: 333 ------QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
                                   E+           +R C+ A +G  LV  D   +E 
Sbjct: 669 DADSENGNYENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVEL 728

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA ++G+   I       DI+ +     F      V+ E+R++ K +   + Y  G  
Sbjct: 729 RVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP- 785

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                         A +  +       V
Sbjct: 786 -------------------------------------------RGLAQQMGVSVEQALRV 802

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +++    V    + + +                              D  +   S R
Sbjct: 803 SSLFKSCFPTVDAYQRRIIDQCR--------------------------SDGSVRTLSGR 836

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
                D+        T  S   R+          +VQ  + D++  GM    +       
Sbjct: 837 VRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADVMKLGMIAVEREVLQPHA 887

Query: 621 -GYDIVLTVHDEIVSETP 637
               ++L VHDEI+   P
Sbjct: 888 PDVRLLLQVHDEIILSVP 905


>gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 199

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           C++ K+AWR  H  +   W+ L       +    +           + ++  +  + + L
Sbjct: 25  CDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRL 79

Query: 563 PSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           PS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M  
Sbjct: 80  PSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPA 139

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG+E  RYRK
Sbjct: 140 IEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 198


>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
 gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
          Length = 1997

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/510 (12%), Positives = 132/510 (25%), Gaps = 120/510 (23%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  + L   +    G+ +D + +  L   +   R ++ E+  KL          + A+ 
Sbjct: 1565 REMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFGSSRAVA 1624

Query: 243  MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
              L L  G         T++ +L       LA  +I  R   S      +  L   V   
Sbjct: 1625 KALRLAGG--NDRKQCRTVRQVLERLESP-LAALVIAYRKIESNL-TRTIEPLYRIVRPG 1680

Query: 303  GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
                    F   + TGR +      Q + +       LT+                    
Sbjct: 1681 SNRVHGRSFCF-TSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAPPPLF------- 1732

Query: 363  CVRSCII---ASNGKKLVVADLAGIEARVLAWIAGEDWKIKA-----------FANGEDI 408
              RS         G  L+ AD   +E  +L  ++ +   + A                D+
Sbjct: 1733 SCRSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEARSDV 1792

Query: 409  YVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            +    A+  +   +    ++     K +   + Y  G                       
Sbjct: 1793 FRALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGV---------------------- 1830

Query: 468  STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                                     A + +L   A   + + + A +  + +  + +   
Sbjct: 1831 ----------------------RAMAAELQLDEDAARTLMEQFHATYPEIRRYIERVVRL 1868

Query: 528  FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
               +                            I   + RR     +  + +   +   + 
Sbjct: 1869 TRQLGY--------------------------IETLTGRRRHLPAITSENARERSEAERQ 1902

Query: 588  MRERTYGGKLTENIVQAISRDILCEGMKNATK-----------NGYDIVLTVHDEIVSET 636
                          +Q  + DIL   +    +                VL +HDE++ E 
Sbjct: 1903 ---------AVCTTIQGSAADILKNAIVRMRRNLRKYRNVLELERIRFVLHMHDELIYEV 1953

Query: 637  PDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665
            P +    +  +  S M         +PL+ 
Sbjct: 1954 PRSQLHKIAKILKSSMENCAK--LSVPLRV 1981


>gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra
           magnipapillata]
          Length = 493

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/540 (12%), Positives = 140/540 (25%), Gaps = 111/540 (20%)

Query: 164 KRDVEATREL--FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
               E    L     +    D E         I   G         KL+E++  +   + 
Sbjct: 29  HLMEEMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEILKGKLDSIQ 88

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           ++  KL+ G + S      +                      +L   +       LIL  
Sbjct: 89  QECYKLS-GSVFSLSSPADVAR-------------------EVLEKLSKFHALPKLILEW 128

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNLPRQ----- 333
              + +    +  +     S   L+    F  A   + TGR +      QN+P++     
Sbjct: 129 RKINSTLTKFVYPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQNVPKEFDIKL 188

Query: 334 ---ERSEEILTQTIQALNRGETIADPLGLASDC----------------VRSCIIASNGK 374
                       T    ++ + ++    L S                  +RS  +  +  
Sbjct: 189 SSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMRSTFVPFSSG 248

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            +V AD   +E R++A ++ +   IK      D++ +  A+  +  +  V+  QR   K 
Sbjct: 249 VMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVTTVQRQHAKQ 308

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
           +   + Y  G K          L +++   +         ++  +       ++      
Sbjct: 309 ICYGIIYGIGIKAL-----SHQLGVEENDASEYMEKFKNRFKGVKRFIQNTIEEARANGF 363

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
              L G    L           +     +                +              
Sbjct: 364 VKTLGGRKRYL---------PAINSKITNDKSHAERQAVNTTIQGSAADLV--------- 405

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                       ++  +++    + +   +           K                  
Sbjct: 406 ------------KIAMNNIDIKLNKIFGNSCFNKLAEKSQPK------------------ 435

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                 G  +VL +HDE++ E        V   +   M         +P+K        +
Sbjct: 436 ------GAYLVLQIHDELLYEVNKENVDIVIKLIRREMESAIILTVKMPVKV--KIGSSW 487


>gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 651

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 91/638 (14%), Positives = 178/638 (27%), Gaps = 150/638 (23%)

Query: 55  SDLLQYLRDETVMCVAHNS-----LF--ERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            DLL+ + +   + + HN       +  +     +    +    R   T + A T   P 
Sbjct: 136 KDLLKEIINSKRLIIVHNLIEEIKNYRNDIKCVLENFNTN---NRIFDTYIGASTID-PG 191

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S+                        +              ++   +  +   +   ++V
Sbjct: 192 SVDG----------------------QTFNQICLVYEVIINKSTTEERLKQTRKLALKEV 229

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           E   + +  +    + E  +  +   +N    ++ID  L+ + ++++ +E+ K++ +  K
Sbjct: 230 EIMNK-YNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLLNEQRKVLIEEQNKIEIE-TK 287

Query: 227 LTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
              G   +      ++  L     GID V     T K ILS S        L+L     S
Sbjct: 288 KIIGKTINLSSPEQVKKELIRYNIGIDGVKKKATTDKKILSQSGHPF--AKLVLEYRKIS 345

Query: 286 GSAILKLNTLSEAVSSDG---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                 +  +       G    +R        + TGR        Q +P+Q  S +    
Sbjct: 346 KLLSGVIEQIRRCCIKTGDEYFIRTKWSQTAIT-TGRIQSKNPNLQQIPKQAFSLQQFVV 404

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                 R   I  N    V  D   IE R+LA    +   I+ F
Sbjct: 405 IP--------------------RDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFF 444

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            +  DI+    A      ++ ++  +R   K +                    G+     
Sbjct: 445 KSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCI--------------YGIGPFSL 490

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
           +  +                               +     +   +++  +     +  +
Sbjct: 491 ADQLH------------------------------ISLDESKTFLESFLDQFPSFKKWKE 520

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           ++    +         + RR  N                                    T
Sbjct: 521 EIITNASTTGFVHTINNRRRRINNL----------------------------------T 546

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636
            +S              + +Q  + DI+   M    K       G  ++L +HDEIV E 
Sbjct: 547 DSSDKKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEV 606

Query: 637 PDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           PD     V  TL  LM         +PL       K++
Sbjct: 607 PDHLLDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKW 642


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/678 (12%), Positives = 167/678 (24%), Gaps = 175/678 (25%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + V ++       +   + + L    V  V  N+    +           +       ++
Sbjct: 323 DDVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLPLLSYKQGKFFTSCVSDVRLM 380

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                  +                + + G    L A  CKGS ++               
Sbjct: 381 TWMLEPSADTAEFADYDKL-LQSYQQQIGLPAGLNAAECKGSKEAV-SHRVFYMEPLYRM 438

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           L+G                L      E+ + ++   +   G+ ++L  V   +   A++ 
Sbjct: 439 LYGR---------LGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKM 489

Query: 218 KKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDL------------------VDMSE 258
           +KL  +   +       + +     R+ L+ +  +                        +
Sbjct: 490 EKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGK 549

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DG---------- 303
             T +  L           +++     +      +    E        DG          
Sbjct: 550 LSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQ 609

Query: 304 -----------------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------------ 334
                            +L   L   G + TGR +      Q LPR              
Sbjct: 610 GKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTN 668

Query: 335 --------RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
                                   E+           +R C+ A +G  LV  D   +E 
Sbjct: 669 DADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVEL 728

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA ++G+   I       DI+ +     F      V+ E+R++ K +   + Y  G  
Sbjct: 729 RVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP- 785

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                         A +  +       V
Sbjct: 786 -------------------------------------------RGLAQQMGVSVEQALRV 802

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +++    V    + + +                              D  +   S R
Sbjct: 803 SSLFKSCFPTVDAYQRRIIDQCR--------------------------SDGSVRTLSGR 836

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
                D+        T  S   R+          +VQ  + D++  GM    +       
Sbjct: 837 VRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADVMKLGMIAVEREVLQPHA 887

Query: 621 -GYDIVLTVHDEIVSETP 637
               ++L VHDEI+   P
Sbjct: 888 PDVRLLLQVHDEIILSVP 905


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 +  + 
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114
                +E  + V  N  ++ I+ +   G  +       T +        L   +      
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
            L++         G K    +  +   D  P D        A          + E     
Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKEND 541

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +RL    D E  L  +   I   G  +D + + +       + ++++++       
Sbjct: 542 AERLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKENTTNWPV 596


>gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1]
          Length = 786

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/592 (13%), Positives = 151/592 (25%), Gaps = 102/592 (17%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDLLQYLRDETVM 67
            L  VG    ++   I    ++  +    L           E   +   +   L  E V+
Sbjct: 157 DLETVGFDYVSKDRFIVSAQFSHREGYSDLVRFYSTEDQPKEGDLLHDQIKWLLNSEMVI 216

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
               N  ++    K    I+  + +   T+++        S      +LN    L     
Sbjct: 217 MCGANFKYDLNWIKYKWNIECTNFKL-DTTLVGSLLNENRS-----NSLNTHAKLFTDLG 270

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE--- 184
           G            D           +   +    Y   D +AT  +          +   
Sbjct: 271 GYD---------DDLNNIYDKGRMDLIPDENLLPYAGGDTDATLRVRNHFARELQQDPWL 321

Query: 185 --------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                          + +   G +++ + +  L E + QE+ +   ++V +         
Sbjct: 322 TNFYVNLLHPASRAFEKMEQNGVKVNGEKLKTLGEELEQEKNQYLREMVDMMPATACPEV 381

Query: 237 QTYAL-------RMYLFLITGI-----------DLVDMSEGTLKSILSHSNITQLAKDLI 278
                       + YLF   G+                ++  L +          A   I
Sbjct: 382 PEAKPVIKAAIGKDYLFGARGLGLKPIMVNEKNKEPLTNKSHLNNF-DDPKKYPEAHKFI 440

Query: 279 LN---RLASSGSAILKLNTLSEAVSSDGRLRGTLQ-FYGA-----------SRTGRWSGC 323
                   +  +              DG    +   F GA           + TGR +  
Sbjct: 441 QLGNKWNQADKAQGTYCTGFLRHQREDGYFHPSYMLFKGAFDNDKGTDDSGTVTGRLAAK 500

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               Q LP+                            +  +R+C     G  +V  D + 
Sbjct: 501 DPAIQTLPK------------------------KTSLAKRLRACYEPPEGYSIVEIDFSQ 536

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV----------SKEQRAIGK 433
            E R L  +A E    KA+  G D++V +         +++           K+ R  GK
Sbjct: 537 GELRRLCGMANEPAMKKAYREGLDLHVISGGATAGLSYEQMQELEKTDAALYKKYRNYGK 596

Query: 434 VMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
                L Y      F+  A    G+ L          + F+ + +    H   ++     
Sbjct: 597 PQNFGLLYGMSWGGFQQYAKDQYGVLLSDKEAQNMRFNFFDTYARLPDWHEETKEFARVN 656

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                 +G    L                + +  G    + +       R  
Sbjct: 657 GYIRSPLGRVRHLPLINSFDNFYKSQAERQAVNSGVQSTLSDLLIYGMARFR 708


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 94/710 (13%), Positives = 168/710 (23%), Gaps = 178/710 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D ET         G+  Y+    +    +        +                L+
Sbjct: 36  ELALDTETT--------GLAMYSSGYKLRTVQFGT-AHEAWVIHYELGGRFAEAADYVLK 86

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSK--RWICTSVLARTNGL--------PSSLKNA 112
                 + HN+ F+ ++      + + S   R + T + A              + LK  
Sbjct: 87  HCPRFLI-HNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGTGLKPL 145

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                  +      +G         G      +      H      +  Y   DV  T  
Sbjct: 146 SAFY--VDPSAPDTQGDLTAVFRSLGLTKETGWAGIDLRHP----TYNLYAGLDVIYTAR 199

Query: 173 LFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           L   L              + E ++  +   +   G  +DL+ V  L+ ++ +E    ++
Sbjct: 200 LNPCLDAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRMLREEE---EK 256

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSH------- 267
            +       + S      +   L L  G  L          + +  L  +          
Sbjct: 257 HLYAAAMWGVDSVNSGAQVAEAL-LAMGETLTQRTDGGALKVDKAVLLPLADLDRDWERI 315

Query: 268 -SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
            +       + +L    +        +  +      GR+   +    A          F 
Sbjct: 316 GAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPHGRIHPNINTLQARTGRMSINGDFA 375

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385
            Q LP  +                             +R  I+       +   D   IE
Sbjct: 376 AQTLPSSDW---------------------------MIRRAIVGDAPDHIMGSVDFQAIE 408

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA +A        F NG   +      A      + +K  R + K       Y GG 
Sbjct: 409 MRVLAALADVKRMKDGFVNGGSDFDIHMYTAQLIKGLEATKRDRKVFKGAGFGKVYGGGV 468

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                                                          A +          
Sbjct: 469 ATI--------------------------------------------ARQTGATEAEIAR 484

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
               +      + +                 S++                          
Sbjct: 485 AVAEYDRVFPEIKRASSRWQREARGTGLVTVSVT-------------------------G 519

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623
           RRL                    R RTY   +     Q+ +RD+L + M N    G    
Sbjct: 520 RRLPLD-----------------RNRTYA--VVNYQCQSAARDVLGQAMLNMRDAGLLDY 560

Query: 624 IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           + L +HDEIV   P              M        G+P+ A+     R
Sbjct: 561 MKLPIHDEIVFSAPKADAKDIAREFEKCM--TMDL-FGVPVVADADLGGR 607


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 92/209 (44%), Gaps = 33/209 (15%)

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG---------------SISARRVA 544
              C+ +K+ WR  H   +  W+DL +G    V+  G               +I   R  
Sbjct: 59  WRTCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTT 118

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDV------------------KGDCSYLNTATSQ 586
            +           + + LPS R L Y  +                  +      N  T Q
Sbjct: 119 EIDSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQ 178

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                T+GGK  ENIVQA  RD+L   M NA   GY IVL+VHDE+V ETPDTP ++V  
Sbjct: 179 WTTLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAE 238

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           L  LM   P WA+G PL AEG E KRY K
Sbjct: 239 LEKLMCALPEWAEGFPLVAEGAELKRYAK 267


>gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5]
          Length = 124

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  L IDIET S  PL K GV+ Y E     I L AY+ D++PV++ D      +P ++L
Sbjct: 1   MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNA 112
             L DE V+  A N+ FERI   + LG      +  + W C+ + + T GLP SL+  
Sbjct: 61  LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 101/389 (25%), Gaps = 94/389 (24%)

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
            L +L        R+  +L     + TGR S      QN P  E+               
Sbjct: 428 FLTSLQTLADDQNRVHCSLNIN--TETGRLSSRKPNMQNQPALEKD-------------- 471

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                        +R   +AS G  L+VAD   +E R+LA +      I AF  G D + 
Sbjct: 472 ----------KYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEAGGDFHS 521

Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            T    F    D V                    A     +                  +
Sbjct: 522 RTALGMFKYIQDAV--------------------ANGDVLLEWDYSKGEPPKPMLKDQYA 561

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
           +     +  +  +         +    +     E + +AW      V +  ++  +    
Sbjct: 562 SERRKAKTLNFSIAYGKTAHGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARN 621

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                  +                           R           +          R 
Sbjct: 622 YGITRTLM--------------------------GRYRHLPHAMEGNNRKR--LGHAERA 653

Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETP-DTPYFS 643
                      +Q  + D+    M          K G+ +++ VHDE++ E P +T   +
Sbjct: 654 SI------NTPIQGGAADVAMMAMIKINDSLLLKKLGWILLMQVHDEVILEGPEETAEEA 707

Query: 644 VGTLCSLMTKNPSWAKGL-----PLKAEG 667
              +   M +   W  GL     PL  +G
Sbjct: 708 FEEVVKCMQEP--WVLGLDKTKVPLLVDG 734



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 95/315 (30%), Gaps = 46/315 (14%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVK--LWD-RTEQSAM 53
             D E      L +VG         +T  +        Y   D P      D   +   +
Sbjct: 35  ACDTE-VMDIDLKEVGP---VGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDAKDL 90

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLK 110
             +   +L D  VM V HN  F+R +     GI++       T  +AR +    +  SL+
Sbjct: 91  LQEFKPWLEDAKVMKVWHNYGFDRHVLFN-EGINVLGFG-GDTMHMARLSDTSRMKYSLE 148

Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVE 168
           +     L   +   K   G   + +          P         +  + + +Y   D +
Sbjct: 149 SLTEDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAMDAK 208

Query: 169 ATRELFKRLIPLSDG----------------ERDLWLLDQTINDRGYRIDLDLVL----K 208
           +T  L++ L                       R    L   +  RG  +  D +     +
Sbjct: 209 STYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVEVQ 268

Query: 209 LQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            ++      +   +   K    DG+  +   +  L  +LF   G +     E T K  + 
Sbjct: 269 ARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLF--GGAENAKTKEPTEKVRVF 326

Query: 267 HSNITQLAKDLILNR 281
            +    +  D +   
Sbjct: 327 KTAREDIPDDAMEAY 341


>gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
 gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
          Length = 489

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/544 (12%), Positives = 149/544 (27%), Gaps = 113/544 (20%)

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
           Y  + +   RE  K      + E  +  +   +   G   +  +    + LI ++ + LD
Sbjct: 3   YYIQSLHIQREDNKFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYLD 62

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS-------------ILSHS 268
                L  G   S      +   LF    I   ++++ T +              +L   
Sbjct: 63  YKAHVLLPGKTFSLSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQI 122

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-----RLRGTLQFYGASRTGRWSGC 323
           N       +I      +      ++ L + +         R+  T+Q      TGR +  
Sbjct: 123 NHYHPLPSIISEYRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVP-TGRIAME 181

Query: 324 VFQPQNL--PRQERSEEILTQTIQALNRGETIADPLGLASDC------------------ 363
               QN+  P   +    +  + +++       D     SD                   
Sbjct: 182 NPNLQNISHPIDFKRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITVS 241

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA--FANGEDIYVTTYAKAFNTPI 421
           +R+  I +NG KL+  D   +E R+L  ++ +   ++        DI+     +  N P 
Sbjct: 242 IRNAFIPANGCKLLSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIPY 301

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D V+   R   K +   + Y  G K   +      L +       K  +  + + +   +
Sbjct: 302 DSVTDSDRQQAKHLVYGILYGMGIKSIASE-----LHIPIEQARGKLENFKKTYNKLIEY 356

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
              +++   +      L G                  ++  +         +        
Sbjct: 357 LEMVEENVIQNGYIATLFGRVRNFSNIHS-------CKIDNNEISKVKRAARNSIPQGTA 409

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                    ++    ++ +    +                    
Sbjct: 410 ADIA---------------------KMAMIKIQDELDKNH-------------------- 428

Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG 660
                       M           L +HDEI+ E P+   +    +    M      +  
Sbjct: 429 --------FKAQMI----------LQLHDEILFEVPENELYQSAQIIKYSMENVVKLSVS 470

Query: 661 LPLK 664
           LP+K
Sbjct: 471 LPIK 474


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 96/387 (24%), Gaps = 87/387 (22%)

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
                 GR+   L     + TGR S      QN P  E+                     
Sbjct: 599 NLRGKTGRVHTALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 639

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R       G  LVVAD   +E R+LA +AG     +AF  G D +  T    
Sbjct: 640 -------IRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGM 692

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                    KE R      +  L Y                +  + +      ++     
Sbjct: 693 --------YKEIREAMDEGKCLLEYGSEGYDED--------EANRPALVKDMFASERRKA 736

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  +  +         A    +     E     W +    V    +        + +   
Sbjct: 737 KVLNFSIAYGKTAHGLAKDFGVSTKEAEDTVNLWYSDRPEVRAWQEVQHANATKLGKVST 796

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +                           R     +             +          
Sbjct: 797 LL--------------------------GRHRNLPEASSRDEMRRQHALRAS-------- 822

Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649
                +Q  + DI    M    +       GY++++ +HDE++ E P+         +  
Sbjct: 823 -INTPIQGGAADIAMLAMMQIHRCPRLKEIGYELLMQIHDEVILEGPEEHKDEALALVKR 881

Query: 650 LMTKNP---SWAKGLPLKAEGYEAKRY 673
            M            + L  +G  AK +
Sbjct: 882 HMENPFNDHENLCDVDLNVDGNYAKTW 908


>gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
 gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
          Length = 290

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           C++ K+AWR  H  +   W+ L       +    +           + ++  +  + + L
Sbjct: 116 CDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRL 170

Query: 563 PSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           PS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M  
Sbjct: 171 PSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPA 230

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 231 IETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 289


>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei]
          Length = 343

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 102/367 (27%), Gaps = 61/367 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A +        D     W  ++  A+ ++  L  +L D +             +    LG
Sbjct: 22  ADLIGFYIGAPDH----WYVSDDVALLAEPVLKDWLEDASHPKAVFGVK-RTQVAANRLG 76

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           + +    +    + +      ++  +     N  E                  + ++   
Sbjct: 77  VHLAGVDF-DLLLASYLLNTTNNSNDLGTVANLHE-------------YQNVQTDEAVYG 122

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195
              +        L  ++  +   A   L  +L              D E  L L+   + 
Sbjct: 123 KGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQME 182

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G R+D   + ++    +Q  K L+E +     G   +      L + LF   G+ +V 
Sbjct: 183 ITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETFNINSPKQLGVILFEKMGLPVVK 241

Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
            ++    T   +L            IL+    +      +  L +++  D ++       
Sbjct: 242 KTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGLLKSIHQDNKVHTRYLQT 301

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371
             ++TGR S      QN+P                                +R   +   
Sbjct: 302 -LTQTGRLSSVDPNLQNIP------------------------VRLAEGRKIRQAFVPSH 336

Query: 372 NGKKLVV 378
              ++  
Sbjct: 337 PDWQMFA 343


>gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 657

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 91/639 (14%), Positives = 176/639 (27%), Gaps = 148/639 (23%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW------ICTSVLARTNGLP 106
           +  +LL  + +   + + +N + E         I    + +        T + A T    
Sbjct: 140 LKKELLPEIINSRRLIIVYNLMEEIK--NYRNNIKCILENFNTNNTIFDTYIGASTIDPG 197

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
           S                   +GK          +        ++   +  +       ++
Sbjct: 198 S------------------VDGKTFSQICLVYEVI-----INKSTIEERLKQTRRLAVKE 234

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           VE        +    + E  +  +   +N    ++ID  L+ + ++ + +E+ K++ +  
Sbjct: 235 VEV-MNNDNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLLNEQRKKLIEEQHKIEME-T 292

Query: 226 KLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
           K   G   +      ++  L     GID +     T K ILS S+       L+L     
Sbjct: 293 KKIIGRTINLSSPEQVKKELIRFNIGIDGIKKKATTDKKILSQSDHPF--AKLVLEYRKI 350

Query: 285 SGSAILKLNTLSEAVSSDG---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
           S      +  + +     G    +R T     A  TGR        Q +P+Q  S     
Sbjct: 351 SKLLSGVIEQIRKCCIKSGDEYFIRTTWSQT-AIVTGRIQSKSPNLQQIPKQSFSLPQCL 409

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                  R   I  N    V  D   IE R+LA    +   I+ 
Sbjct: 410 IIP--------------------RDLFITHNNNTFVAIDYNQIELRILADFTKDHHLIEF 449

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
           F +  D++    A      ++ ++ ++R   K +                    G+    
Sbjct: 450 FKSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCI--------------YGIGPFS 495

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
            +  +                               +     +   +++  +     +  
Sbjct: 496 LADQLH------------------------------VSLDESKAFLESFLDQFPAFKKWK 525

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           ++     +                  R+       D   V  S R               
Sbjct: 526 EETITNASTTGFVHTI-----NNRRRRINNLTDCNDKKTVAESKRI-------------- 566

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635
                             + +Q  + DI+   M    K       G  ++L +HDEIV E
Sbjct: 567 ---------------AVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLE 611

Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            PD     V  TL  LM         +PL       K++
Sbjct: 612 VPDHLLDEVCVTLKHLMEHIVK--LEVPLVVTVETGKKW 648


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 84/678 (12%), Positives = 166/678 (24%), Gaps = 175/678 (25%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + V ++       +   + + L    V  V  N+    +           +       ++
Sbjct: 323 DDVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLPLLSYKQGKFFTSCVSDVRLM 380

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                  +                + + G    L A  CKGS ++               
Sbjct: 381 TWMLEPSADTAEFADYDKL-LQSYQQQIGLPAGLNAAECKGSKEAV-SHRVFYMEPLYRM 438

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           L+G                L      E+ + ++   +   G+ ++L  V   +   A++ 
Sbjct: 439 LYGR---------LGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKM 489

Query: 218 KKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDL------------------VDMSE 258
           +KL  +   +       + +     R+ L+ +  +                        +
Sbjct: 490 EKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGK 549

Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DG---------- 303
             T +  L           +++     +      +    E        DG          
Sbjct: 550 LSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQ 609

Query: 304 -----------------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------------ 334
                            +L   L   G + TGR +      Q LPR              
Sbjct: 610 GKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTN 668

Query: 335 --------RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
                                   E+           +R C+   +G  LV  D   +E 
Sbjct: 669 DADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGVPDGYSLVSLDYEQVEL 728

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA ++G+   I       DI+ +     F      V+ E+R++ K +   + Y  G  
Sbjct: 729 RVLAHLSGDSALISVLTKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP- 785

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                         A +  +       V
Sbjct: 786 -------------------------------------------RGLAQQMGVSVEQALRV 802

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +++    V    + + +                              D  +   S R
Sbjct: 803 SSLFKSCFPTVDAYQRRIIDQCR--------------------------SDGSVRTLSGR 836

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
                D+        T  S   R+          +VQ  + D++  GM    +       
Sbjct: 837 VRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADVMKLGMIAVEREVLQPHA 887

Query: 621 -GYDIVLTVHDEIVSETP 637
               ++L VHDEI+   P
Sbjct: 888 PDVRLLLQVHDEIILSVP 905


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 108/261 (41%), Positives = 147/261 (56%), Gaps = 5/261 (1%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             W  F EY +RDV A R++ KRL     +  E  LW LDQTINDRG  ID DLV     
Sbjct: 1   MDWAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIG 60

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + + ++ L +    LT G ++++ Q  AL  +L    G+ L DM + T+   +    + 
Sbjct: 61  AVERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPALP 120

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +  ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLP
Sbjct: 121 ETVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 332 RQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           R   S+E++   I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRV 240

Query: 389 LAWIAGEDWKIKAFANGEDIY 409
           LAW+AGE  K+ AF   +   
Sbjct: 241 LAWLAGETPKLHAFREFDTCQ 261


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 113/415 (27%), Gaps = 97/415 (23%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
           L       R++++ +++  L+ L E +    DG  R        + TGR        QN 
Sbjct: 604 LWHLQRSIRISAAITSV--LSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNP 661

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R    A  G  L+V D + +E R+LA
Sbjct: 662 PSAHNDLY------------------------SIRKAFSARPGNTLIVGDYSQLELRILA 697

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++  +  I+    G DI+       F    + V+     I                   
Sbjct: 698 HMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANGSVVIDDAEAH------------- 744

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                              ST     +  +  +         A +  L  T    +   W
Sbjct: 745 ---------PGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTRW 795

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
               +GV +   ++ +           +                           R   +
Sbjct: 796 NNSKKGVERWKAEIIQQARDTQHATSVL--------------------------GRHRRF 829

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDI 624
             +K     L   + +  R           ++Q  + DI    M    +       G+ I
Sbjct: 830 PHIK---HRLRKYSGRSERAA------VNFVIQGSAADIAMMAMLRVDRDERLRRMGFKI 880

Query: 625 VLTVHDEIVSETP-DTPYFSVGTLCSLMTKN-----PSWAKGLPLKAEGYEAKRY 673
           V+ VHDE++ E P +    +V  +  LM        P +   + L  +      +
Sbjct: 881 VMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 935



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 12/109 (11%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLC-AYA-----WDDEPVKLWDRTEQSA-MPSDLLQ 59
           D E      L +           +    A+      +   P+   D    S  +      
Sbjct: 150 DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 206

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           Y  +     + HN   +  +     GI +       T  LAR      S
Sbjct: 207 YFENPAKRKIFHNFAADAHVLYGH-GITVRGLE-ADTRYLARLFDSSLS 253


>gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 205

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
           C++ K+AWR  H  +   W+ L       +    +           + ++  +  + + L
Sbjct: 31  CDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRL 85

Query: 563 PSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
           PS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M  
Sbjct: 86  PSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPA 145

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
               GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 146 IETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 204


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 108/261 (41%), Positives = 148/261 (56%), Gaps = 5/261 (1%)

Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             W  F +Y +RDV A R++ KRL     +  E  LW LDQTINDRG  +D DL      
Sbjct: 1   MDWAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIG 60

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            + + ++ L E    LT G+++++ Q  AL  +L    G+ L DM + T++  L    + 
Sbjct: 61  AVERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLP 120

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +  ++L+  R  +S ++  K   L    S DGRLRGTLQF GASRTGRW+G +FQP NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 332 RQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           R   S+E +T  I A+  G       D + L S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWIAGEDWKIKAFANGEDIY 409
           LAW+AGE  K+ AF   +   
Sbjct: 241 LAWLAGETPKLHAFGEFDTCQ 261


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/535 (14%), Positives = 139/535 (25%), Gaps = 119/535 (22%)

Query: 164  KRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
                 AT  L+ ++  +             E     +   I   G   ++DL + +   +
Sbjct: 1197 CFQSAATNVLYPKIFEILKKKNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCL 1256

Query: 214  AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD------------MSEGTL 261
              +  +  E       G   S      +   LF    +   D                T 
Sbjct: 1257 KNKLNE-LEAEAAKEAGHRFSLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTA 1315

Query: 262  KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----------AVSSDGRLRGTLQ 310
            K +L +         +IL     S +    +  L               S+  R+ G   
Sbjct: 1316 KHVLENLAQLHPLPGIILEFRQLSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYD 1375

Query: 311  FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
            +Y A  TGR        Q +P+                    +  P G  +  +R   +A
Sbjct: 1376 WYTA--TGRLIMHEPNLQIVPK-------------------FLEIPNGNNTLHIREIFVA 1414

Query: 371  SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
            S G  L+ AD + +E R+LA ++ +   IK      D++    AK  +     V++ QR 
Sbjct: 1415 SEGCTLLSADFSQLELRILAHLSNDSKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRN 1474

Query: 431  IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
              K +  AL Y    K          L   +        +  + +       +   ++  
Sbjct: 1475 RAKQICYALIYGMCPKSLAAE-----LGTDEEQAIQFYNNFKKLFPDVTRWLIETTEKCR 1529

Query: 491  EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                   L                  +                      +        L 
Sbjct: 1530 SRGFCVTLANRVRY---------FAAIRSSATSDKLHAERQAINTTVQGSASDIFKIALR 1580

Query: 551  MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                             L   D       +N A                   Q ++    
Sbjct: 1581 KVY--------------LALDDYTKKNGQMNNA-------------------QTLA---- 1603

Query: 611  CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664
                         I+  +HDE++ E  ++   +V T+    M    S    LP++
Sbjct: 1604 ------------KIIFQIHDELMLEVTNSNVEAVATIVKHSMETAVSLRVDLPVR 1646


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 35/236 (14%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L   V  + +   T     ++ TGR S      QN+P                    
Sbjct: 1   TDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIP-------------------- 40

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       +R+  I++ G KL+ AD + IE RVLA +A      KAF +G DI+  
Sbjct: 41  ----VRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAM 96

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T ++ F  P++ +  E R   K +   + Y               L +++          
Sbjct: 97  TASEMFGVPVEGMPGEVRRRAKAINFGIIYG-----ISAFGLANQLSIERSEAGDYIKKY 151

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
           FE +     +    +    +    + + G           +++  V  L   L   
Sbjct: 152 FERFPGIRDYMESRKAMARDKGYVETIFGRRI------NYSRNPLVQSLRARLQRA 201


>gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
 gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
          Length = 609

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/558 (14%), Positives = 145/558 (25%), Gaps = 102/558 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWDRTEQSAMPSDLLQ 59
           MS L  DIET               + A         DD P                 LQ
Sbjct: 1   MSHLIFDIETNGLLDATNRVHCLCIKDADTGQVWSCTDDGPTGTYIPIERG-------LQ 53

Query: 60  YLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LN 117
            L D  V+ + HN   F+    +K      P      T V +R         +       
Sbjct: 54  LLADAEVL-IGHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPK---DDLRERDFR 109

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAW----QLFGEYCKRDVEATR 171
             +       GK       + ++++  Y     + ++   W    Q   +YC++DVE T 
Sbjct: 110 LQKQ------GKLPGNLIGRYALEAWGYRLGEYKGDYKGPWDVWSQEMQDYCEQDVEVTF 163

Query: 172 ELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L++++          + E  +  +       G+  D      L   + Q + +L+ ++ 
Sbjct: 164 RLYQKIKEKGWKEESIELEHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKTELEAELQ 223

Query: 226 --------KLTDGIIRS---------------------SRQTYALRMYLFLITGIDL--- 253
                   +       +                           +   L    G +    
Sbjct: 224 SAFPPWEVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKYGWEPSEF 283

Query: 254 -VDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGTLQ 310
             +      + +LSH      AK L    +                + V +DGR+ G + 
Sbjct: 284 TDEGKPKVDEDVLSHLPYP-EAKLLSEYLMVEKRLGQIATGKEAWLKHVKADGRIHGDVT 342

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             GA  TGR +        +P                                 R   +A
Sbjct: 343 TNGA-VTGRMTHSKPNIAQVPGNG-----------------------SPYGHRCRELFVA 378

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           +  K LV  D   +E R LA                +                +    R 
Sbjct: 379 AKRKLLVGCDADALELRCLAGYMARYDGGAYVRTVLEGKKELGTDMHTLNAKAL-GCSRD 437

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---- 486
           + KV   A  Y  G     T+     L   +  +      +   + +A      +     
Sbjct: 438 VAKVWFYAFIYGAGDFKLGTI-----LGAPKGEEQKWGRRSRARFLKALPALGTIIKKVQ 492

Query: 487 DQYPEFAVKDKLIGTACE 504
           ++  +      L G    
Sbjct: 493 EKVQKKGFLRGLDGRELR 510


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 97/373 (26%), Gaps = 88/373 (23%)

Query: 289  ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               L  L E V    R+  +L     + TGR S      QN P  E+ +           
Sbjct: 1155 SNFLQPLQELVDEKSRVHCSLNLN--TETGRLSARKPNLQNQPALEKDQY---------- 1202

Query: 349  RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                           +R+   A  G  LVVAD   +E R+LA I      I AF  G   
Sbjct: 1203 --------------KIRAAFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGCF 1248

Query: 409  YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +  T    F+   + V K +                      +                 
Sbjct: 1249 HSRTAVGMFDHVKEAVDKGEVL--------------------LEWDYSKGEPPKPLVKDV 1288

Query: 469  TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
             ++     +  +  +              +     E + KAW A    V +  K + +  
Sbjct: 1289 FASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNA 1348

Query: 529  ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
                                                 R     D+  +        ++  
Sbjct: 1349 KDTG--------------------------FSRTLMGRYRKLPDITSNDRGKVGHGTRA- 1381

Query: 589  RERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY- 641
                         +Q  + D+    M    +       G+ ++L VHDE++ E P+    
Sbjct: 1382 --------AINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESAK 1433

Query: 642  FSVGTLCSLMTKN 654
             ++      M + 
Sbjct: 1434 EALAETVRCMQQP 1446



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 81/304 (26%), Gaps = 55/304 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVKLWD-RTEQSAMPS 55
             D E  S   L   G         +T  +        +      +   D     +    
Sbjct: 650 ACDTE-VSEINLKDHGP---VGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLE 705

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWI-CTSVLARTNGLPS--- 107
           + L +   E    V HN  F+R +   +        I    +   T  +AR         
Sbjct: 706 EFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKY 765

Query: 108 ------SLKNACLAL---NFSEHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQ 157
                 SL+   L L      +   K   G   + +      +   P         +   
Sbjct: 766 AGDTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRP 825

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE-----------RDLW-----LLDQTINDRGYRI 201
            F EY   D +AT  + + L+                  +++      L   +   G  +
Sbjct: 826 RFIEYSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYV 885

Query: 202 D-LDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLITGIDLVD 255
           +  D +  ++     ++KK +E  +             +   +  ++  LF   G     
Sbjct: 886 EAKDYLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLF--GGATNPK 943

Query: 256 MSEG 259
             E 
Sbjct: 944 TKEK 947


>gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 460

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/513 (13%), Positives = 135/513 (26%), Gaps = 123/513 (23%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY-- 239
           + E         +       D   + +    +    KKL+E  +     ++ SS      
Sbjct: 2   EIEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEEYALTQKWIVLDSSVSIARR 61

Query: 240 ------ALRMYLFLITGIDLVDMSEGT-----LKSILSHSNITQLAKDLILNRLASSGSA 288
                  L+  L+    +     ++ +     L+ +   SN       +I +R       
Sbjct: 62  ALTNNTYLQDRLYKHLKLTPPPGAKTSIDANNLRKLYEQSNHPFPL-LIIEHRSVFKRR- 119

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
               +T+    + D R+R ++        GR +       +L       +          
Sbjct: 120 -GFADTILGMYADDSRIRYSIFQTN-HDCGRLAHSEPNFHSLAHDMTCGDQ--------- 168

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED- 407
                   L      +RS  +    K  V AD + +E R++A  +G+   I    N E  
Sbjct: 169 -----FYGLDAPKISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEPN 223

Query: 408 -----IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
                 +    +K +    D V  E+R   K +   L Y  G                  
Sbjct: 224 NLKDDPFTMLASKWYRKAPDTVLAEERTNCKNLVYGLLYGSG------------------ 265

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                       + A   ++   A +     +++    +++   
Sbjct: 266 --------------------------AKKLASDLRMCEEAAKSEVARFKSMLPRLMEWLD 299

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
            +                              K    +   S+R   + D+       N 
Sbjct: 300 GIVIRARE-----------------------EKPIARVTTISARHRYFPDLHSKN---ND 333

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--------NGYDIVLTVHDEIVS 634
             +   R+          + Q  + DI    +                 +VLTVHDE V 
Sbjct: 334 DRAAAERQA------VNTVCQGSAADIFKTAVVRVIDTLRTKYLIERCQLVLTVHDECVF 387

Query: 635 ETPDTPYFSVGTLCSL-MTK-NPSWAKGLPLKA 665
           E       ++  +    M      +   +PL  
Sbjct: 388 ECDARSAKAIAQIVRHAMESVANEFNLAVPLPV 420


>gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 681

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 112/380 (29%), Gaps = 50/380 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
           A     +     + + + D      +  +  L + L D+ +     +     +  ++ LG
Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141
           I + +       + +      ++  +          F     ++  GK            
Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +  T+ + +   +         +    +  ++L    + E  + ++   +   G ++
Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258
               ++K++  +      L   I +L      +      L + LF    +     ++   
Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
            T   +L            IL+    S      +N L + + +DG++         + TG
Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377
           R S      QN+P                                +R   +       L 
Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656

Query: 378 VADLAGIEARVLAWIAGEDW 397
             D + +E RVLA ++ E  
Sbjct: 657 SCDYSQVELRVLAHVSHEKN 676


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/629 (11%), Positives = 157/629 (24%), Gaps = 161/629 (25%)

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                + +       K  +  F +            A          EY  +        
Sbjct: 56  HIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQIPRY 115

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
            + L  +   E     +   +   G   D +L  + ++     +++  E I ++      
Sbjct: 116 EEWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFN 172

Query: 234 S------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN--------------- 269
                  S +T  ++  +F    I             +  L                   
Sbjct: 173 IDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKY 232

Query: 270 ---------------------------------ITQLAKDLILNRLASSGSAILKLNTLS 296
                                                 K+  L  +            LS
Sbjct: 233 LGVSLPENWGNIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLS 292

Query: 297 EAV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +           GR+      +  + TGR +      QN+PR +  E           
Sbjct: 293 SHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF---------- 340

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +R+  +   GK L   D +G E R++AW +G++  I+ F  G D+
Sbjct: 341 --------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDM 386

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVK 467
           +  T +        ++ K++R   K     + Y G     + T  +   +          
Sbjct: 387 HRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQI 446

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
             +    +++   +   +  +  E      + G         +     G+    +     
Sbjct: 447 VNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGS 497

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                       +                                 K   + +  +  + 
Sbjct: 498 AERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQ 529

Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV--- 644
               ++G           S D++                 +HDEI+ E  D P   V   
Sbjct: 530 EGVLSHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVE 563

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +  +M + P     +P++AEG    R+
Sbjct: 564 KQIKQVMEQPPVPGFPVPIEAEGSVGYRW 592


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 72/267 (26%), Gaps = 49/267 (18%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 81  AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 140

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 141 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 199

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G+Y   + + T  L +        
Sbjct: 200 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 244

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 245 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 304

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG 259
            +      L + L+   G+ ++  +  
Sbjct: 305 -NLGSPKQLGVILYEKLGMPILSKTAT 330


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 110/703 (15%), Positives = 192/703 (27%), Gaps = 169/703 (24%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS---DLLQY 60
           + +D ET         G+  YA        A   ++                     L+ 
Sbjct: 41  VAVDTET--------CGLKIYAWGPGFLRLAQFGNETEAWALPIEHGPEYVEAAAWALRV 92

Query: 61  LRDETVMCVAHN-SLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKN-ACLAL 116
           L D       HN S F+ ++  + LG+ +     +   T +LA+       ++      L
Sbjct: 93  LPD----LTGHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGL 148

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATRELF 174
             +                 K    S     T            + EY   DV  T  L 
Sbjct: 149 KANSARYIDPTAPD-TQDGLKAVFKSLKLKITEGFAKIPLDHPTYLEYGLLDVILTSRLR 207

Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            RL                E  +  +   +   G  +D +    LQ  +A +  +  E  
Sbjct: 208 PRLEATLAKLGVPKTLAVYEHRVARICAQMVRAGLVLDEEYTTGLQSDLAYDADRYSEVA 267

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI------------TQ 272
           +      + S+RQ  A  + L           +    K++L                   
Sbjct: 268 LGYGVESVNSARQVSAALLDLGETLTEKTASGALKVDKAVLMALADLDRDWKPIRSREPN 327

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           +  D +L    +        +   E V + GR+   +Q   A RT R S      Q LP 
Sbjct: 328 VLADAVLRSKRAGKWRSAYADNFLENVDAQGRIHPNVQSMQA-RTFRMSVTQPAVQTLPS 386

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
            +                             +R  ++A  G+ +V  D   +E RVLA +
Sbjct: 387 SD---------------------------KMIRRALLADPGEVMVSVDFQAVELRVLAAL 419

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
           A       A A GED++  T                          L +  G        
Sbjct: 420 ADVKRMKAAIAAGEDLHSFTAR------------------------LVFGDGFTDKD--- 452

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                                   +  +            + +      A +     +  
Sbjct: 453 --------------------RKVSKGIAFGKVYGGGAATVSRQTGAPLGAVQRAMAKYDQ 492

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            +  V +  KD           G SI+  R                   LP  R   Y+ 
Sbjct: 493 VYPEVGRAAKDWRIEAFNNHMVGISITGHR-------------------LPLDRDRSYA- 532

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHD 630
                                   +T  +VQ+ +RD L + + +  + G    + L +HD
Sbjct: 533 ------------------------ITNYLVQSTARDCLGQALIHMDEAGLVPYLRLPIHD 568

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
           E+++  P      +   +   MT +     G+P++A+    KR
Sbjct: 569 EVLASVPKAEAEEISRAIAKAMTFSLR---GVPIEADAEIGKR 608


>gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1)
            [Caenorhabditis elegans]
          Length = 1661

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/498 (15%), Positives = 140/498 (28%), Gaps = 132/498 (26%)

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E +       I   G   D  L       I ++ + L+E+I +L  G   +   +  
Sbjct: 1271 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKF-NIHSSNE 1329

Query: 241  LRMYLFLITGI--DLVDMSEG------TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   LF   G+        +       T K IL   N        IL       +    L
Sbjct: 1330 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCL 1389

Query: 293  NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
              L++ +   GR+     F   + TGR    V   QN+P++  S+               
Sbjct: 1390 MPLAKFI---GRIHCW--FEMCTSTGRILTSVPNLQNVPKRISSD--------------- 1429

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                        R   IA++   L+ AD   +E RVLA ++ +   +    +  D++   
Sbjct: 1430 --------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEEL 1481

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
              +             R   K +   L Y  G                            
Sbjct: 1482 SIQWN---------FPRDAVKQLCYGLIYGMG---------------------------- 1504

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                +   ++     E + KA+ A   GV     +  E      
Sbjct: 1505 ----------------AKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKV---- 1544

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                   ++  I     RR          S +    +++ R   
Sbjct: 1545 ----------------------CKEEPISTIIGRR-----TIIKASGIGEERARIERVA- 1576

Query: 593  YGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT-L 647
                     +Q  + +I    + +        G  IVLT+HDE++ E P+    +    +
Sbjct: 1577 -----VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESI 1631

Query: 648  CSLMTKNPSWAKGLPLKA 665
             + M    S    +P++ 
Sbjct: 1632 ENCMQNALSHLLRVPMRV 1649


>gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans]
          Length = 1540

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/498 (15%), Positives = 140/498 (28%), Gaps = 132/498 (26%)

Query: 181  SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               E +       I   G   D  L       I ++ + L+E+I +L  G   +   +  
Sbjct: 1150 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKF-NIHSSNE 1208

Query: 241  LRMYLFLITGI--DLVDMSEG------TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +   LF   G+        +       T K IL   N        IL       +    L
Sbjct: 1209 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCL 1268

Query: 293  NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
              L++ +   GR+     F   + TGR    V   QN+P++  S+               
Sbjct: 1269 MPLAKFI---GRIHCW--FEMCTSTGRILTSVPNLQNVPKRISSD--------------- 1308

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                        R   IA++   L+ AD   +E RVLA ++ +   +    +  D++   
Sbjct: 1309 --------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEEL 1360

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
              +             R   K +   L Y  G                            
Sbjct: 1361 SIQWN---------FPRDAVKQLCYGLIYGMG---------------------------- 1383

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                                +   ++     E + KA+ A   GV     +  E      
Sbjct: 1384 ----------------AKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKV---- 1423

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                   ++  I     RR          S +    +++ R   
Sbjct: 1424 ----------------------CKEEPISTIIGRR-----TIIKASGIGEERARIERVA- 1455

Query: 593  YGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT-L 647
                     +Q  + +I    + +        G  IVLT+HDE++ E P+    +    +
Sbjct: 1456 -----VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESI 1510

Query: 648  CSLMTKNPSWAKGLPLKA 665
             + M    S    +P++ 
Sbjct: 1511 ENCMQNALSHLLRVPMRV 1528


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/405 (15%), Positives = 122/405 (30%), Gaps = 53/405 (13%)

Query: 65  TVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119
               V  N+  F R + +     G       ++     V A                  +
Sbjct: 314 KCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSD-----------T 362

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLI 178
               +    K L          +             +      Y     + T +L  +L 
Sbjct: 363 APSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLK 417

Query: 179 PL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                      E  L  +   + +    +D + + +   L+    K+L+++      G  
Sbjct: 418 AYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGEQ 476

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILNR 281
                   LR  LF    + L+   +            T +++L+          LIL  
Sbjct: 477 FLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEY 536

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                     ++ L   +   G +  T    G + TGR S      Q + +         
Sbjct: 537 RQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                     TI+          R+  ++S G   + AD + IE R+LA ++G+   +K 
Sbjct: 595 NFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 645

Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           F   E    + T  ++  + PI++V+   R   K +  ++ Y  G
Sbjct: 646 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAG 690



 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 22/149 (14%)

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
           ++        ++V        ++     RR     +           +Q  R+       
Sbjct: 670 VTHMDREQTKKVVYSVVYGAGYVTSILGRRRPLPRICAQDQ---QLRAQAERQA------ 720

Query: 598 TENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
              +VQ  + D+    M   +            +V  +HDE++ E  DT       L   
Sbjct: 721 VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRR 780

Query: 650 LMT-----KNPSWAKGLPLKAEGYEAKRY 673
           +M      +       +PLK      + +
Sbjct: 781 IMESLQQVQTLELQLQVPLKVNLSVGRSW 809


>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
 gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
          Length = 2154

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 84/691 (12%), Positives = 168/691 (24%), Gaps = 138/691 (19%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----------DETVMCVA------- 70
             I   A  W++ P+   +  +    P +    LR              +  +        
Sbjct: 1506 EIHGMAICWENSPIYYVNLPKDLLCPDNQKYVLRPENWLEIVRHRWNRIGKIMGKREVIK 1565

Query: 71   --HNSLFERILFKKTL------------GIDIPSKRWICTSVLART----NGLPSSLKN- 111
               N   +  + K  +            G D+  +  I +   +        +   +   
Sbjct: 1566 FTWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLE-LIDS---SHLPLPQINVTEGIDMC 1621

Query: 112  -ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                 L   E  +     +  + R    +      +       Q  +     C R V  T
Sbjct: 1622 IVAWILWPDEERSSNPNLEKEVKR-RLPTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQT 1680

Query: 171  RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            R L   L  L             E  L  +   +   G  +D++  L+ + ++ ++ + L
Sbjct: 1681 RALCSVLWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRHL 1740

Query: 221  DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLA 274
            ++   +L             +   L+    + +        +   T K  L         
Sbjct: 1741 EKKAYELAGMTFSLYTA-ADIANVLYGRLKLPIPEGHGKGKLHPSTDKHCLDLLRKKYCC 1799

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
               +     ++                   L   + F+       W   +          
Sbjct: 1800 FAFMFYATIAALK-----------------LGLLMLFFLILMILIWVSEIKVLLRTNLGV 1842

Query: 335  RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIA 393
                      +                   R   I       L+ AD + IE R++A  +
Sbjct: 1843 MQCVEHMVEFKISMDKNGGDAEANNYKINAREFFIPTQENWLLLTADYSQIELRLMAHFS 1902

Query: 394  GEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
             +   I+  +    D++    A+      + V+  +R   K +   + Y  GA       
Sbjct: 1903 KDASLIELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGILYGMGANTL---- 1958

Query: 453  SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                L+        K  S    +    S          +    + L G    L K  +  
Sbjct: 1959 -AQQLECSSDEAAEKIKSFKSCFPGVASWLHEAVASCRKNGYVETLKGRKRFLSKIKFGN 2017

Query: 513  KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
                     K+ ++     V      SA  +  +  + +               R+   D
Sbjct: 2018 S--------KEKSKAQRQAVNSICQGSAADLIKIAMINIYSVIA----------RVDGPD 2059

Query: 573  VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
                 +                                   M    K    I+L VHDE+
Sbjct: 2060 PSSSLA-------------------------------TKFHML---KGRCRILLQVHDEL 2085

Query: 633  VSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662
            V E          +L    M    S    +P
Sbjct: 2086 VLEVDPPVIKEAASLLQAGMENAASL-LDMP 2115


>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
          Length = 1821

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/470 (14%), Positives = 129/470 (27%), Gaps = 82/470 (17%)

Query: 208  KLQELIAQERKKLDEDIVKLTDGIIRS-SRQT--YALRMYLFLITGIDLVDMSEGTLKSI 264
            + +  + + RK   + + + T   + +                 T        +  L+  
Sbjct: 1406 RARIKLKKIRKMRSQKLAEDTLTEVNNRLNSPIRAESSDIARNKTKQKAKPKLKEILERN 1465

Query: 265  LSHSNITQL-AKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYGAS 315
            L  +N           +    S ++  K+          L +   +D R+RG       +
Sbjct: 1466 LLLANCNTDSIIYNSEDETTLSLASKTKIIETQSNLIQPLLKLAQTDSRVRG--NSITCT 1523

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P+                     +         VR   + + G  
Sbjct: 1524 VTGRVSMHEPNLQNVPKD-------------------FSFADNNFVLSVRMAFVPALGNI 1564

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            ++ AD   +E R+L   + +    +      DI+ +  AK  N   ++V+ E R   K +
Sbjct: 1565 MLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQRTKQL 1624

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y  G K          L + +        S    +         + ++       
Sbjct: 1625 CYGMIYGMGVKSLAE-----NLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHRDVYI 1679

Query: 496  DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
              L+G          R +   +                      +        ++    +
Sbjct: 1680 TTLLGR---------RRQFPDLKSTKSSTRAQAERQAVNTKVQGSAADIVKKAMISIEER 1730

Query: 556  RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
                       R  + D       +N              KL  N     SRD+      
Sbjct: 1731 I----------RCNFPDSAIIFPEMN-----------NTRKLRSN-----SRDM------ 1758

Query: 616  NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664
               + G  +VL +HDE++ E        V  +    M         LP+K
Sbjct: 1759 --QQRGGYLVLQLHDELLYEVNLADLKEVAAIIRESMENVCQLTVPLPVK 1806


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 72/267 (26%), Gaps = 49/267 (18%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74
           A++A +   ++A           T           +  +   L   L D     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123
           F   L            GID+   R+  T + +             +     L  +    
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181
           +   GK                         A +  G+Y   + + T  L +        
Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510

Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    D E  L  +   I  +G  +D +L+      +  +   L+ +   +     
Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG 259
            +      L + L+   G+ ++  +  
Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTAT 596


>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
 gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
          Length = 1996

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/728 (11%), Positives = 171/728 (23%), Gaps = 148/728 (20%)

Query: 31   TLCAYAWDDEP--VKLWDRTEQSAMPS--------DLLQYLRDETVMCVAHNSLFERILF 80
               A ++   P  V        +             +   L    V  V      +    
Sbjct: 1324 VGIALSFPFNPLAVFYAPIVHGAGGGGATRGLPWTRVRDVLSRSGVGKV----TVDLKPQ 1379

Query: 81   KKTLGIDIPSK-RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK-----ALIAR 134
             + +G         +   + A        L        +        +        ++ R
Sbjct: 1380 LRAMGAGATIAAPVVDVKIAAWVLHPDEELLKYSSQTGWDALNAVDPDRARGPCAGMLER 1439

Query: 135  FCKGSIDSPPYDCTRANHVQAWQ------------LFGEYCKRDVEATRELFKR-----L 177
            F            ++    +A                      D     +L        L
Sbjct: 1440 FAGDVDADAIRAASKWRGPRATADGVNAGGANAAFAVASALSLDALVRAKLADPRAPSGL 1499

Query: 178  IPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----------V 225
                   E  L  +  ++   G       + +      +  ++++ +             
Sbjct: 1500 EDALRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAVAVVATHFACRH 1559

Query: 226  KLTDGIIRSSRQTYALRMYLFLI----TGIDLVDMSEGTLKS-------------ILSHS 268
                    +   +  +   LF       G +    ++ T                +    
Sbjct: 1560 PGMAPPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQDDLLALVREQG 1619

Query: 269  NITQLAKDLILNRLASSGSAILKLNTLSEAVSS--------------DGRLRGTLQFYGA 314
                    L+L   +     + + N       S                RLRG +     
Sbjct: 1620 GPIAAFPKLVLEHRSLRKL-LDEANEFGRLAKSELGGDAAAAADESVTIRLRGVIHQTN- 1677

Query: 315  SRTGRWSGCVFQPQNLPRQERSEEILT--QTIQALNRGETIADPLGLASDCVRSCIIASN 372
            + TGR +      Q +PR           + + A  R     D     +  +R+   A  
Sbjct: 1678 TGTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETLAIRNAFRAPR 1737

Query: 373  GKKLVVADLAGIEARVLAWIAGEDWKIKAF---ANGEDIYVTTYAKAFNTPIDKVSKEQR 429
            GKKL+  D   IE RV+A ++ +   I A    +      +    K   T    VS E R
Sbjct: 1738 GKKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTTPKNVSDEDR 1797

Query: 430  AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
            A  K +   + Y  G   ++       + + +                 E     +    
Sbjct: 1798 AKAKELCYGICYGAGVGRYQQ-----AMGVTELEARAAIEDFKRSLPGVERWKSALVKDA 1852

Query: 490  PEFA--VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
             E        + G    L              L      G      E  +I+     +  
Sbjct: 1853 RERTPPHVRTIAGRCRFLP------------SLNATGAGGEIRAADERKAINTACQGSAA 1900

Query: 548  RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
             +V                + V  ++    +    A         +              
Sbjct: 1901 DIV----------------KRVMIELHAKLTSGGGADDDDE----WAP------------ 1928

Query: 608  DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSW-AKGLPLKA 665
                  ++       ++VL VHDE++ E  +     +V  +  +M +        +PL  
Sbjct: 1929 ------LREVDA--CEMVLQVHDELLFEVDERKVDVAVRAIRGVMERAREVHDMKVPLPV 1980

Query: 666  EGYEAKRY 673
                   +
Sbjct: 1981 RVSVGDDW 1988


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 97/318 (30%), Gaps = 89/318 (27%)

Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
           +R   +   G  +L+ AD + IE R++A ++ +   I+AF  GED++    ++AF+ PID
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +V+ E R   K M                    GL                         
Sbjct: 61  EVTPELRRRVKAMSYG--------------LAYGLS------------------------ 82

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                     A + K+     ++  + +  +  GV    +D+ +           +    
Sbjct: 83  ------AYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVL---- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                                  RR    ++      +  A  +               +
Sbjct: 133 ----------------------GRRRYLPELDSSNRQVREAAERA---------ALNAPI 161

Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655
           Q  + DI+   M N  +          I+L VHDE++ E  +     +  L    M    
Sbjct: 162 QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNAY 221

Query: 656 SWAKGLPLKAEGYEAKRY 673
                +PL+      + +
Sbjct: 222 P--LDVPLEVSVGYGRSW 237


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 38/303 (12%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +R+      G  ++ AD + +E R+LA +A +   +    +G D++    AK  +  +D 
Sbjct: 82  IRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQIAAKWKHVDVDS 141

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           V+ EQR   K M   + Y  GA+          L + +        S    ++  +++ L
Sbjct: 142 VTAEQRQQAKQMCYGMIYGIGARALGE-----QLGVCEEDAAAFMESFKSQYKGMKNYLL 196

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            +  Q  E      L G          R     +                      +   
Sbjct: 197 EVVKQCREKGYVQTLTGR---------RRYLPAIHHTNPGARNQAERQAVNTTVQGSA-- 245

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
           A++ +  M +  R + +  P+++R      + + S       +  R +T     T     
Sbjct: 246 ADLVKTAMVKIDRRLAVEYPATKRSHKHK-EEEESGTAPGRRKSRRLQTSTTGFTP---- 300

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662
                            G  +VL +HDE++ E        V  L    M      +  LP
Sbjct: 301 ----------------PGAFLVLQLHDELIYEVRREDVDQVAQLIKTEMENAMKLSVRLP 344

Query: 663 LKA 665
           +K 
Sbjct: 345 VKV 347


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 82/235 (34%), Gaps = 40/235 (17%)

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           SDGR+  T +   A  TGR S      QN+P                            A
Sbjct: 13  SDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPA 47

Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
              +RS  +   G + L+ +D + +E R++A ++G++  I+AF +G D +    +  +  
Sbjct: 48  GREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGV 107

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+D+++ +QR+  K M   L Y        T      L ++           F  + +  
Sbjct: 108 PVDEITPDQRSHVKAMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKRQYFATFGKVH 162

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
            +   +     E    + + G          R    G+    + + +        
Sbjct: 163 EYLESLVSSAREKGYTETIYGR---------RRYFPGLKSPNRAVRDAAERAALN 208


>gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta)
           [Canis familiaris]
          Length = 576

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/582 (10%), Positives = 144/582 (24%), Gaps = 101/582 (17%)

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN-ACLALNFSEHLTK-MEEGKAL 131
             +   + GI +  + +    V        S    L +     L     L + +E G+ +
Sbjct: 27  YKILLLSCGISLE-QSYEDPKVACWLLDPDSKEPTLHSIVSSFLPHELLLLEGIETGQGI 85

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
            +     + +           + A+    +      +   +           E       
Sbjct: 86  QSLGLNVNTEHSGRYRASVESILAFNAMNQLNSLLKKENLQDVFC-----KVEMPSQYCL 140

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             +   G           + ++  +   ++    +L       +                
Sbjct: 141 ALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSD------------- 187

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLR 306
                     + +L+          LIL     + +    +  L      +      R+ 
Sbjct: 188 -------DIAEDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIY 240

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQ-----------ERSEEILTQTIQALNRGETIAD 355
              Q + A  TGR +      QN+PR                + L + +  +        
Sbjct: 241 PVSQSHTA--TGRITFMEPNIQNVPRDFEIKMPILVGESPPSQALAKGLLPVYGRGRGKR 298

Query: 356 PLGLASD------------------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
             G  S                    +R   +  +G  ++ AD + +E R+LA ++ +  
Sbjct: 299 SCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQLELRILAHLSHDRR 358

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+    G D++ +  A+      + V  + R   K +   + Y  GAK          +
Sbjct: 359 LIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QM 413

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            +++        S    +                      ++G    L        +   
Sbjct: 414 GIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGRRRYLPGINDNNPYH-- 471

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
                           +          +   +     K+++  + P         V    
Sbjct: 472 ------------KAHGKHSHGQYINDCDCIPIRPYLQKQELSQIWPEGLPTSGPTV---- 515

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 +    R+           VQ  + DI+     N  K
Sbjct: 516 -----PSLNAERQAI------NTTVQGSAADIVKIATVNIQK 546


>gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 942

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/560 (13%), Positives = 147/560 (26%), Gaps = 105/560 (18%)

Query: 154 QAWQLFGEYCKRDVEATRELFKR-----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           +  +            T+ L        L  +   E  +     T+   G   D  +V  
Sbjct: 445 RPLERLRLDLLAAARLTQRLKAHERVRGLARVVALEGAIAAGLGTLESIGLPFDASVVEA 504

Query: 209 LQELIAQERKKLDEDIVK--LTDGIIRSSRQTYALRMYLFLITGIDLVD----------- 255
               + +E   ++ +  +     G   +      +   L+   G                
Sbjct: 505 AAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQVADVLYGFLGFPPPSSNAMQGAKTAQ 564

Query: 256 -MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
             ++  +    +          ++L   A + + +   N  +    +DGRLR        
Sbjct: 565 LTTKDDVLRDFASRPNAHPLPGMVLRYRAVTRA-VAMCNAYASLTDADGRLRCEWN-NTR 622

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR S      Q + R E S     + +   N               +R+  +A  GK
Sbjct: 623 TATGRLSSSNPNLQAVGRAEHSAGAGEEELATFN---------------LRAAFVAPPGK 667

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFA---NGEDIYVTTYAKAFNTPID-KVSKEQRA 430
            L+  D + IE R LA +  ++          +G D++   +  + + P D  VS E R 
Sbjct: 668 VLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKMIWNLSRDAPRDAPVSAEDRD 727

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K     + Y  G            L     +      + F  +   +   +  +++  
Sbjct: 728 KAKRTVYGVLYGQGVAGLAEK-----LACSTDAAKGLIDALFRTFPGLKRFVVATKERAR 782

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                +   G    L      A         K +         +    +  R        
Sbjct: 783 ATKSAELPSGRHRPLPGIDAAAASARAEAERKAMNTLVQGTAADMMKTAMARWFAAISPA 842

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                    I    +    ++DV+G                                   
Sbjct: 843 PAASASASAISPGGAEGDAHADVRG----------------------------------- 867

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPD--TPYFSVGTLCS-LMTKNP------------ 655
                 A      ++  +HDE++ E  D       V  L    M +              
Sbjct: 868 -----KADPTRARLIAQIHDELLFECDDARECVNRVAALAKVCMERAAKVSVPTPVKVSV 922

Query: 656 --SWAKGLPLKAEGYEAKRY 673
              WA   PL   G  + RY
Sbjct: 923 GRDWATMTPL---GEFSARY 939


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 81/533 (15%), Positives = 161/533 (30%), Gaps = 93/533 (17%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYL 61
             +  D+ET S             +   + L  Y+    EPV   D         +L+  L
Sbjct: 903  TVVFDLETGSADD-----QHVTDDPGFVRLATYSVGGAEPVATTDIA------GELIPLL 951

Query: 62   RDETVMCVAHNS-LFERILFKKTLGID----IPSKRWICTSVLARTN-----GLPSSLKN 111
                   V HN   ++  + ++  G+D    I + +   T ++ R        L  +L  
Sbjct: 952  EQAD-TIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLDA 1010

Query: 112  ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                        K+  G    +     +     +D    ++ +    + EY  +DV A  
Sbjct: 1011 VAHRCGVDG---KLLAGSE--SALKALAKQYGGFDKIPVDNPE----YVEYALQDVRANG 1061

Query: 172  ELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             ++++L+P             E +       +   G R+D   V       AQ + ++  
Sbjct: 1062 AVYEKLLPATIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEEAQTKAEIRA 1121

Query: 223  D------IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQ 272
                   I         S+    A+  YL    G+     ++    T    L+       
Sbjct: 1122 WLVDTVGIPDEGKAPWASAAGKQAIAEYL-ERFGVAAPRTAKGAISTSAKALNDLAEAHA 1180

Query: 273  LAKDLILN--RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
               +++    ++ +   +     T+ + +  +   R       +  TGR S         
Sbjct: 1181 DVPEVVELAAKMETLLQSSTPATTIKKYLRGE---RVYPHITSSQATGRLSTTNPGM--- 1234

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVL 389
                                 T+           R  I+A +  ++L+  DL+ I+AR +
Sbjct: 1235 ---------------------TVFGSRDERLIRQREMIVADSADEELISVDLSQIDARCM 1273

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            A  +G+      FA G D +     + F          +R+  K +  A  Y  G K F 
Sbjct: 1274 AAGSGDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMGPKSFA 1327

Query: 450  TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
              A      + +     +      ++ Q E+    ++             G  
Sbjct: 1328 AHA-----GISEVEAKEQLDRLHFEFPQLEAFKDHLRKHAKALGWIATGFGRR 1375


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 89/714 (12%), Positives = 165/714 (23%), Gaps = 179/714 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D ET         G+  YA    +    +        +        +     +   
Sbjct: 36  ELALDTETT--------GLDIYAPGYGLRTVQFGT-THEAWVIH----YELRGRFKEA-- 80

Query: 63  DETVMCVA-----HNSLFERILFKKTLGIDIPSK--RWICTSVLARTNGL--------PS 107
            + V+        HN++F+ ++      + + S   R I T + A              +
Sbjct: 81  ADYVLKHCPRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGT 140

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
            LK         +      +G         G   +  +      H      +  Y   DV
Sbjct: 141 GLKPLSAFY--VDPSAPDTQGDLTAVFRSLGLTKATGFAGIDLRHP----TYNLYAGLDV 194

Query: 168 EATRELFKRLI----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
             T  L   L            L+D E ++  +   +   G  +DL+ V  L+ ++ +E 
Sbjct: 195 IYTARLNPCLDVEHERLGVRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEE 254

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNI---- 270
            K              S      +   L              +    K +L         
Sbjct: 255 DKYATIAASWGVE---SVNSGAQVSEALLAMGETLTETTDGGALKVSKKVLLPLADLDRD 311

Query: 271 --------TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
                        + +L    +        +  +E     GR+  T+    A        
Sbjct: 312 WERIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENHDPLGRIHPTINTLQARTGRMSIS 371

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381
             F  Q LP  +                             +R  ++       +   D 
Sbjct: 372 GDFAAQTLPSSDW---------------------------MIRRAVLGDKPDHIVGSVDF 404

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
             IE RVLA +AG     + F + +                                   
Sbjct: 405 QAIEMRVLAALAGVRRMTEGFLDPDPDPSVYPD--------------------------- 437

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                          +   +  +   +T       +               + +      
Sbjct: 438 ----------GFDIHMYTARLIKGPNATKRDRKVFKGAGFGKVYGGGIKTISRQTGAPEH 487

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   +      + +                 +                        
Sbjct: 488 EIARAVAEYDRVFPEIKRASSKWQREARARGCVTVT------------------------ 523

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621
            P+ R L                    R R Y   +     Q+ +RD+L + M N    G
Sbjct: 524 -PTGRILPLD-----------------RNRMYA--VVNYKCQSTARDVLGQAMINMRDAG 563

Query: 622 Y--DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
               + L +HDEIV   P +            M        G+P+ AE     R
Sbjct: 564 LLEYMKLPIHDEIVFSAPKSDAQDIAREFERCM--TMDL-FGVPVVAEADLGGR 614


>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
 gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
          Length = 1489

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 71/634 (11%), Positives = 146/634 (23%), Gaps = 160/634 (25%)

Query: 92   RWICTSVLARTNGLPS------SLKNACLALNFSEH-------LTKMEEGKALIARFCKG 138
              +   + A      +      S  +                   +++  K+ +   C  
Sbjct: 916  PCVDVRIAAWLLRPSAPEVQSSSRDDL--VHGMDPTEPLMSLFSAELDSAKSGVDTACL- 972

Query: 139  SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---KRLIPLSDGERDLWLLDQTIN 195
                         H++        C        E       +  L   E         + 
Sbjct: 973  ---LLERKGRSYEHLKPLSRAVASCFLMGRFLWEECEAKDLIRALIRVEMPFVAPIVAME 1029

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ-------TYALRMYLFLI 248
                  D   + +    +    KKL+E   K                     L   L+  
Sbjct: 1030 TVKVPFDPRRLKEEIAAMDDRLKKLEEYAKKQKWLDPLHPANLRRAFTDNAYLVKCLYEH 1089

Query: 249  TGIDLVDM-------------------SEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
              +                        ++ T + +   S        ++ +R        
Sbjct: 1090 LKLTPPAGSELAFTKDWVSNAKECTVSTKTTYEKVHEQSGHMFPL-LILEHRSVFKRL-- 1146

Query: 290  LKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
               + L        D R+R ++        GR +                     ++   
Sbjct: 1147 TFADVLLGMYGESMDSRIRYSIHQTN-HDCGRLTHIEPNFH--------------SMAHD 1191

Query: 348  NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--- 404
             +     D L      VRS       +  +  D + +E RV+A  +G+   I    N   
Sbjct: 1192 MKCVDAFDGLDAPVISVRSAFTPPADRVFLRVDYSHLELRVMAHFSGDQTLIALLQNPEP 1251

Query: 405  ---GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
                +D +     K    P++ VS ++R   K +   + Y  G                 
Sbjct: 1252 VNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVYGILYGSGV---------------- 1295

Query: 462  FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                                           A + +L     +++    ++    ++   
Sbjct: 1296 ----------------------------KRLARELRLSDEKAKILVDELKSMLPTLMNWR 1327

Query: 522  KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
             D+                              K    +   SSR   + ++        
Sbjct: 1328 DDVVARAIE-----------------------EKPIPRVTTISSRHRYFPELLSRSGDER 1364

Query: 582  TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--------GYDIVLTVHDEIV 633
            +A  +              + Q  + DI    +    +            +VLTVHDE V
Sbjct: 1365 SAAERQ---------AVNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLVLTVHDEAV 1415

Query: 634  SETPDTPYFSVGTLCS-LMTK-NPSWAKGLPLKA 665
             E   +   +   +    M      +   +PL  
Sbjct: 1416 FEVNASVAKAAARIVRNTMESVAGVFNLSVPLPV 1449


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 107/396 (27%), Gaps = 109/396 (27%)

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                        + V +D R+R  L    A   GR+S      Q +P +  +       
Sbjct: 297 LDKLVSTYRWWARDFVDADRRIRCRLHPLAADS-GRFSCTEPNLQQVPSEYTAPG----- 350

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R+C + + G +L+VAD A IE RV A +A  D     F 
Sbjct: 351 --------------------LRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFR 390

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D +  T A     P  +V   +R + K +     +  GA+ F++ A+          
Sbjct: 391 AGRDPHRATAATLTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAAS--------- 441

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
                                             L        ++A+     G+    + 
Sbjct: 442 -----------------------------GYGLDLDERQAAEAREAFFRTFPGIAAWHRR 472

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
           +         E  +++                          RR  +   +   +     
Sbjct: 473 VGALSRRGDHEAITVTTAM----------------------GRRKTFPAGRFSFNA---- 506

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT 639
                             VQ  + +     M    +     G   VL VHDE ++E P+ 
Sbjct: 507 -------------ALNIPVQGTAAEGFKAAMIRLHRELPSIGGRGVLVVHDEYLAEVPEA 553

Query: 640 PYFSVGTLCS-LMTKNP-SWAKGLPLKAEGYEAKRY 673
                  +    M          +P+  E   A  +
Sbjct: 554 RAEEGKAMVEAHMIAAMGELVHTVPIVVEAEIAAHW 589


>gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L IDIET S   L K GV+ YAE     + L  Y+ D   VK+ D  +   +P +++  L
Sbjct: 23  LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82

Query: 62  RDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACLALN 117
            DE V   A N+ FERI   + LG +    +    W C+ V +   GLP SL+     L 
Sbjct: 83  EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGAVLG 142

Query: 118 FSEHLTKMEEGKALI 132
                 K+ EGK LI
Sbjct: 143 LE--KQKLTEGKDLI 155


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1388

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 186/707 (26%), Gaps = 189/707 (26%)

Query: 3    KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYL 61
             +  D+ET     L    V  +     + L  Y+ +  EPV   D         +L+  L
Sbjct: 816  TVVFDLETGDADDLHVTEVPGF-----VRLATYSVNGAEPVPTTDIA------GELIPLL 864

Query: 62   RDETVMCVAHN-SLFERILFKKTLGID----IPSKRWICTSVLARTN-----GLPSSLKN 111
                   V HN   ++    ++  G+D    I + R   T V+AR        L   L  
Sbjct: 865  EKAD-TIVGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDK 923

Query: 112  ACLALNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                      L    E   KAL  +F         +D    ++      + EY  +DV A
Sbjct: 924  VASRCGVDGKLLADGETALKALAKQF-------GGFDKIPVDNPN----YVEYALQDVRA 972

Query: 170  TRELFKRL---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
               ++++L               E         +  RG R+D   V +      Q + ++
Sbjct: 973  NVAVYEKLLTSVGKEINQDYLRLEHAKMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEI 1032

Query: 221  DEDIVKL--TDGIIRSSRQTYALRMYLFLIT---GIDLVDMSE-------GTLKSILSHS 268
               ++         +S   + A +  +        +     S+         L  +    
Sbjct: 1033 RTWLIDTVGIPDEGKSPWASAAGKQVIADYLSQFNVAAPRTSKGSISTSTKALNELAEKH 1092

Query: 269  NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                   +L         ++     +         R+  +++   A  TGR S       
Sbjct: 1093 PDVPEVVELAAKMETLLHASTP--ASTINRYLRGDRVYPSIKSIQA--TGRLSTTKPGM- 1147

Query: 329  NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEAR 387
                                   T+    G      R  I+  +  + LV  DL+ I+AR
Sbjct: 1148 -----------------------TVFGSRGEWLIRQREMILPDSTDEALVSVDLSQIDAR 1184

Query: 388  VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
             +A  +G+                                          A  +  G   
Sbjct: 1185 CMAAGSGD---------------------------------------ANYAQLFTPGRDA 1205

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
               MA             V   ++     +A +H          FA    +         
Sbjct: 1206 HTEMAL-----------RVFGDASRRSDAKALAHAANYGMGQKSFAQHAGISEVEATKQL 1254

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
            +    +   + +    L +  A                              I     RR
Sbjct: 1255 ERLHYEFPALEKFKDHLRKHAAAHG--------------------------WIPTGFGRR 1288

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV-L 626
            +     K   +Y             YG        Q  +RD+  EG+ N      ++V +
Sbjct: 1289 VTVDRAK---AYTRGP-------AAYG--------QGTARDVFLEGVLNLPAEVLEMVRI 1330

Query: 627  TVHDEIVSETPDTPYFSVGTLCSLMT--KNPSWAK----GLPLKAEG 667
             VHDEIV   P      +      M   +           +P+ ++ 
Sbjct: 1331 FVHDEIVLSVPRDRAEEIKHTV--MGAFQAVELPNTGGVDVPVLSDS 1375


>gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A]
          Length = 710

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/773 (12%), Positives = 192/773 (24%), Gaps = 195/773 (25%)

Query: 4   LFIDIETRSPQ-PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  D ET      + K+    +     +        D    +         P+ +     
Sbjct: 17  LSFDCETTIRNHDIGKLQASPFHPANKMVCFGCKTLDAEPVVLRPEHAD-FPTIIR---E 72

Query: 63  DETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVLARTN-GLPS---SLKNACLA 115
           +  ++ V  N  F+ +   +T       +P+     T +      G      SL    + 
Sbjct: 73  NGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMASLNELAMK 132

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
              +                 K    +  +          + +  EY K DV  T  +F 
Sbjct: 133 YGGT----------------LKDDRIAEFWKAGVDTSDIPFPMLEEYQKYDVINTEIVFL 176

Query: 176 RLIPLSDGERDLWLLDQTI---------NDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
             +     E  L L    +            G + D DL L+L + +  E + +   +  
Sbjct: 177 EQVDQIIKEGLLNLTMTQMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSS 236

Query: 227 LT-----DGIIRSSRQTYALRMYLF----------------------------------- 246
           +           +      +   +F                                   
Sbjct: 237 VMEAVGFPKDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKI 296

Query: 247 -------LITGIDLVDMSE--------GTLKSILSHSNITQLAKDL---ILNRLASSGSA 288
                        +    +         +L  + +      + + L   IL         
Sbjct: 297 FERSKRIEGLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQLEKDV 356

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                  +  V  DG L G    +  + TGR S      QN+     S + L +      
Sbjct: 357 NTYYIGYASQVFPDGCLHGNYN-HTKTGTGRLSSSSPNLQNI---SNSGKDLQRKNNKTT 412

Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
           +   ++D        ++ CII+     K++  D + +E    A + G+    K    G D
Sbjct: 413 QRFHMSD--------IKRCIISRFPNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVD 464

Query: 408 IYVTTYAKAF-----------NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
            +  + + A                D    + R   K +  AL Y  GA+     A    
Sbjct: 465 THCMSASWANPKYSYEEILAGYKAEDPFFTKLRKNAKPVNFALQYGAGAETAAENA---- 520

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
             ++         + ++ +   +     + +Q                            
Sbjct: 521 -GIEVEQAQAIIDNYYKRYCVLKQFQDDVIEQ---------------------------- 551

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                                ++  R  +  R  M           P+ R         +
Sbjct: 552 ---------------------VNKSRQPSSRRTEMGMPAGRGEYRNPTGRIFT----FYE 586

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAIS-RDILCEGMKNATKN---------GYDIVL 626
                    +         +      Q+ +  DI+   + +  K             ++ 
Sbjct: 587 YDAPEFLRRRGQMTSFSPTQCKNYPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCLLIG 646

Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK-------GLPLKAEGYEAK 671
           TVHD +V +               LM + P + +        +PL  +    +
Sbjct: 647 TVHDSVVFDVHPDILDYAAKAVRGLMLRTPEYVERYLKVPFDMPLACDVDIGE 699


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/699 (13%), Positives = 168/699 (24%), Gaps = 189/699 (27%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            DIET              A+   +T  ++++    +              L Q     +
Sbjct: 28  FDIETDGLLDETSTIHCICAKDF-LTGESFSFGPGEI--------EDGLGLLCQ-----S 73

Query: 66  VMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLT 123
            + VAHN   F+    +K     +   R   T   +R      +LK+     L       
Sbjct: 74  RLLVAHNGLCFDIPAIQKLHP-SLLLPRLFDTLTASRLIWT--NLKDLDFTQLRKKSCRF 130

Query: 124 --KMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPL 180
             K+    +L A   +  +    Y  T  N    W +    YC++DVE    L++ ++  
Sbjct: 131 PPKLAGSHSLDAWGQRLGVMKGDYGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHILDQ 190

Query: 181 ------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG---- 230
                    E +   +       G   D      L   +A +R      + ++       
Sbjct: 191 RYSPEALALEHEFQAVIFHQERTGVWFDERAAQSLYAELAAKRNDAVTALQEVFPQKRIE 250

Query: 231 -------------------------IIRSSRQTYALRMYLFLITGIDL----VDMSEGTL 261
                                       +      +   L    G               
Sbjct: 251 EIFIPKANNRTRGYVKGVPFTKVRYETFNPASRQQIADRLMEKHGWKPSEFTDTGQPKVD 310

Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTG 318
           + +L+           +++ L       +         + V  DGR+ G +   GA  TG
Sbjct: 311 EDVLASL--PFPECKPLVDYLELLKIIGMLAEGKNGWLKLVGPDGRIHGRVITNGA-VTG 367

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           R +        +P                          G      R+   A      V 
Sbjct: 368 RCTHNSPNLAQIP------------------------ARGQYGKQCRALFAAPPPLVQVG 403

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
           AD +G+E R+LA        + A+  G    V                E R   K    A
Sbjct: 404 ADASGLELRMLAHY------LAAYDGGAYAKVLLEGDIHTANQHAAGLETRDNAKTFIYA 457

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
             Y  G +   ++ +                                             
Sbjct: 458 FLYGAGDEKLGSIVAPLASSA-----------------------------------VQTK 482

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G A +     +      + +L  D+          G      +   +  +         
Sbjct: 483 RGRALK---DRFFRSLPAIKRLIDDVQ---------GVLTGPGKRPYLIGI--------- 521

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615
                  R L         +                      ++Q+    ++        
Sbjct: 522 -----DGRHLHIRSSHSALN---------------------TLLQSAGAVLMKLATVIFH 555

Query: 616 -NATKNGYDI------VLTVHDEIVSETPDTPYFSVGTL 647
             A + G  +      VL VHDE    T      ++G L
Sbjct: 556 MEAQRRGLRLGEDYAQVLHVHDEAQFNTTPEKADALGKL 594


>gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 169

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +   W+ L       +    +           + ++  +  + + LPS R L Y+  
Sbjct: 6   FPAIAAFWQALQCAVTDAIGHPETAHT-----CCGIAVQYSRAWLRLRLPSGRVLYYAAP 60

Query: 574 K----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627
           +    G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLT
Sbjct: 61  RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLT 120

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           VHDEI++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 121 VHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/552 (13%), Positives = 138/552 (25%), Gaps = 129/552 (23%)

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTIND 196
             T        +    Y  +D+E    + +   P             E +       +  
Sbjct: 26  RPTEWAAPFPAEQL-VYMVQDIEIPYAIAQHQRPRIKEQKLARVVHLENEAVPALAAMEM 84

Query: 197 RGYRIDLDLVLKLQEL-----------IAQERKKLDEDIVKLTDGIIRSS---------R 236
           RG  ID++    +              + +      +         +             
Sbjct: 85  RGVCIDVERWRSILARKQARQQALEPGLRETLGTALQRACDDYQVALTREEKRLVEAYRA 144

Query: 237 QTYALRMYLFLITGI----------DLVDMS----------------------EGTLKSI 264
                   LF   G+                                        T +  
Sbjct: 145 NPAQSSWGLFRRKGLAQWQATHKKPPQPKERGTINLASPPQLLAALRALGVPVSATDEET 204

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
           L        A   +L        A      L   V +DGRLR      GA  +GR     
Sbjct: 205 LEPYAKEHAAVASLLQWKELHKFASSFGENLLAMVDTDGRLRTDYAQIGA-ASGRIICSK 263

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              Q +P                       +      + VR C +A  G +++ ADL+ I
Sbjct: 264 PNLQQIP---------------------AEEEEEGQEEPVRHCFVAPPGYRILKADLSNI 302

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI-------GKVMEL 437
           E R+LA ++ +   ++ FA G+D++  T    F+   +  +K             K +  
Sbjct: 303 ELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKRHLYKGVPGRKIAKTINF 362

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
            L Y  GA      A      +   +      + FE +            Q  E      
Sbjct: 363 GLAYGMGANGLANRA-----GVDLPTAKSLIRTYFETYRGIARWLPLTAKQALEQGYAVT 417

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           L G           A     +   +++        +         +      +++R    
Sbjct: 418 LAGRRRT------FASIPTSVDWNREVRASAERSAKN------HPIRGTNADILKRALAL 465

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
           +H  LPS   L+ + V  +                             +  ++   M  A
Sbjct: 466 LHASLPSGAHLILA-VHDEIVVECPEECVEE-----------------AAGVMRAAMVQA 507

Query: 618 TKNGYDIVLTVH 629
            ++   +   VH
Sbjct: 508 CRDFLKV---VH 516


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/662 (13%), Positives = 177/662 (26%), Gaps = 165/662 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51
             + ID ET          + ++   A +T+ + +W D    +              E+ 
Sbjct: 198 KIIGIDFET--------NTLESWRTNARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQ 249

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---- 107
            +  ++ Q  + + +  V HN  F+  + K   G+D  S + I T V+    G       
Sbjct: 250 DIKHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLD-RSIKCIDTEVM-YYVGFSQAKKV 307

Query: 108 --SLKNACLAL----NFS-----------EHLTK--------------MEEGKA----LI 132
              LK    A      +            E   K                EGK      +
Sbjct: 308 KKGLKQIARAFTDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKALELEGKDPDKAKV 367

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL-- 190
           ++    +  +              ++   Y   D + T  LF +++      R    L  
Sbjct: 368 SKKDYKAPTNEIDGGKFNYDWIDMEVQFPYAAADADVTLRLFNKMVGRIKKNRAWVNLVF 427

Query: 191 ---------DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI----------------- 224
                      TI   G ++D++   +L +   + R  +  +I                 
Sbjct: 428 NIFPRLNDALTTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIPEIKMIEKERLNF 487

Query: 225 --------------------------VKLTDGIIRSSR-----QTYALRMYLFLITGIDL 253
                                      K   G               ++  L+ + G +L
Sbjct: 488 AMEREQIKKIKPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDMKRLLYDVLGYEL 547

Query: 254 VD------------MSEG-TLKSILSHSNITQLAKDLILNRLASSGSAIL---KLNTLSE 297
                           +  ++                I      S +       ++ L E
Sbjct: 548 PQEPPYVTGNPKNITWKSYSVGKAAQEYLEETYKTKFIDLYSKYSKAETALGSFIDKLPE 607

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
               D  ++ +   Y    +   S   F  QN  R+  +      +    +         
Sbjct: 608 VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYGVKSMY------- 660

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  RS      G  L+  D + +E   +A ++ +    +A  + +DI+    +  F
Sbjct: 661 -------RSRF---KGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGF 710

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           + P D+V+K  R   K +   + Y  G K          L + +        +      Q
Sbjct: 711 HVPYDEVTKNLRTSAKKVSFGIPYSMGIKTL-----AKDLGVDEKEAQRIYDAILATMPQ 765

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            +      Q+    +   + L G         +R     V  + KD+             
Sbjct: 766 VKQAMADSQEFAARYKYAETLNG---------FRRDLSNVDSILKDVRAKAKRQAFNTEI 816

Query: 538 IS 539
             
Sbjct: 817 QG 818


>gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus]
 gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus]
          Length = 1177

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/652 (11%), Positives = 168/652 (25%), Gaps = 112/652 (17%)

Query: 39   DEPVKLWDRTEQSAM-----PSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-DIP--- 89
            D  V   +  + S +        + +    E +     ++  +++      G+ D+    
Sbjct: 613  DNAVFYLNLRKDSEIKCNLKQDLIRKLFTREDLTIDMFDAK-DQLKLAHKGGLLDLKQEV 671

Query: 90   SKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                    V             L+                 G++  +     +  S    
Sbjct: 672  VVSVRDPKVACWLLQAEDKVIPLQAMVQQYCPEMTAICQLAGRSPGSTGPASNCGSAIDA 731

Query: 147  CTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              R              + D   T+          +  E  + +    +   G+  D   
Sbjct: 732  KIRCTVESFLVHHLLLSQLDHFTTQDRPQDMTATFTSREMPIHVALARMELVGFPADGAK 791

Query: 206  VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSI 264
            +  L   +   ++++ E + +L  G       T  +   L     +         T + +
Sbjct: 792  LGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVAAVL----KVPKDRNGRARTSRQV 847

Query: 265  LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
            L   +   LA  +I  R   S  +   +  L   +    R+ G+   +  + TGR S   
Sbjct: 848  LERIDSP-LAALVIAWRKIDSNLSRT-IEPLGRGIVGGRRIYGSSYCF--TSTGRISMHE 903

Query: 325  FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAG 383
               Q +                +       +P  +     R      +  K L+ AD   
Sbjct: 904  PNLQTV----------------VKDFRVEIEPGTVEMFSCRGTFACEDSSKVLISADFCQ 947

Query: 384  IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQ 442
            +E  VL  ++ +   +    +G+D++    AK  +   ++   ++     K +   + Y 
Sbjct: 948  LELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIEDEREVSDELRNYTKAIVYGVIYG 1007

Query: 443  GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
             GA+          L++ + +           + +   +   +     E    + L G  
Sbjct: 1008 MGARSMAAE-----LNVDEDTARTLMEQFHATYPEIRRYAEKVVQVTRERGYIETLTGR- 1061

Query: 503  CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                    R     +                      +        ++            
Sbjct: 1062 --------RRYLPAIHSTDSTKRSEAERQAVCTTVQGSAADILKNAIL------------ 1101

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
                                      R      K  E              +        
Sbjct: 1102 --------------------------RMARNLRKYRER-----------LALGEVE---- 1120

Query: 623  DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
             +VL +HDE++ E P      VG +  S M    +    LPL+ +      +
Sbjct: 1121 -LVLHMHDELIFEAPRDQARKVGKILKSSMENCAN--LSLPLRVKVKSGPSW 1169


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 99/685 (14%), Positives = 192/685 (28%), Gaps = 155/685 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M+ L +D+ET       +    A  EQ  I   ++ +                  D+ + 
Sbjct: 26  MNFLVLDLET--DTDGDERSPDATWEQNDIVSASWVFGTGGRGTEKFVYGG--IHDMDEL 81

Query: 61  LRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSS------LK 110
           ++D  E    VAHN+ F+     +  G+D        T +        L +       L 
Sbjct: 82  IQDMYEADFVVAHNAKFDIKWLIRA-GLDPSRILVADTMLAEYVLTGNLKAGKKGALTLG 140

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L  ++           + R        P     R N    +Q    + K   E 
Sbjct: 141 ALAKQYLGVTKDPLVD-----KLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEM 195

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
                  L         L  +   I   G  +D + V +  ++ ++   +++ D++ + D
Sbjct: 196 MERDVIHLF---YNRCLLSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMID 252

Query: 230 GIIRSSRQTYALRMYLFL--------ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281
           G  R+ R    ++ +++           G++     E  L+                   
Sbjct: 253 G--RNPRSVPQMQEFIYDVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFA 310

Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEIL 340
             ++  +   L+     V+         QF  A + T R S    + +     +     L
Sbjct: 311 QLNADLS-KNLDYFYGVVTEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQL 369

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
             + +   R  +  +                    ++  D A IE RV  +I  +    +
Sbjct: 370 QNSPRKYKRLYSARN----------------PDWYVIEMDGAQIEFRVAGYIGQDTRICQ 413

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
              +G D++  T +   +   ++V+K+QR   K                      G D Q
Sbjct: 414 DIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPDTFKPL----------YGGQYGTDDQ 463

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                                                          +A+R K+Q + Q 
Sbjct: 464 MA-------------------------------------------YYEAFRNKYQDITQA 480

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +D                           + +  R+  I  P+     Y +     S  
Sbjct: 481 QQDW--------------------------LMKVLRNKEITHPTGITFYYPNASMSSSGY 514

Query: 581 NTATSQLMRERTYGGKLTENIVQAIS-RDILCEGMKNA------TKNGYDIVLTVHDEIV 633
                           +    VQ ++  +I+   +          K    +V TVHD ++
Sbjct: 515 CQDF----------PSVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQSFLVNTVHDSVI 564

Query: 634 SETPDTPYFSVGTLCSLMTKNPSWA 658
           SE+P            LM +   WA
Sbjct: 565 SESPRDEL-------ELMYEISKWA 582


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 36/260 (13%)

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTL 309
                   T + +L+           IL+    +         L +      + R+  + 
Sbjct: 2   KKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSF 61

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P   +  +                          +SC +
Sbjct: 62  LQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------------------------KSCFV 96

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + + E R
Sbjct: 97  AKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETR 152

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           ++ K +   L Y  G K          L ++           FE++   + +   ++++ 
Sbjct: 153 SVAKSINFGLIYGMGYKTLSQ-----NLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEA 207

Query: 490 PEFAVKDKLIGTACELVKKA 509
            +      L G       + 
Sbjct: 208 KQNGFIVTLSGRKRYFDFEN 227


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTATSQLMR 589
           +IS R       L        + I LPS R L Y   K           Y         +
Sbjct: 10  AISTRESQKYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRK 69

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           + TYGGKL ENIVQAI+RD L   ++     G   V+ VHDE ++E P++   SV  L +
Sbjct: 70  QYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAITEVPESE-SSVDKLNA 128

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++ +  SWA GLPL+ +G+ +  Y K
Sbjct: 129 ILAEPISWAPGLPLQGDGFSSDFYMK 154


>gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 462

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 105/372 (28%), Gaps = 38/372 (10%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +D E ++  +   +      +D + + +  +L+  + K+L+++      G I       
Sbjct: 14  YTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAH-RAAGEIFLITSNT 72

Query: 240 ALRMYLFLIT-------GIDLVDM---SEGTLK------SILSHSNITQLAKDLILNRLA 283
            LR  LF             L       + T +        L           +IL    
Sbjct: 73  QLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILEYRQ 132

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   ++ +   + +        Q    ++  R  G       +  +E        T
Sbjct: 133 VHKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQEGWT 192

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
             A  + E +           R   I   G   V AD   +E R+LA  + +   ++ F 
Sbjct: 193 FVAAGKEEVVVKVHP------REMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRIFN 246

Query: 404 NGEDI-YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           + +   +    ++       +V+ E R   K +  ++ Y  G +    +     L +   
Sbjct: 247 HPQSDVFTMLASQWKGLSQSEVTSEDREHAKRIVYSVVYGAGRERLSGI-----LGVSAK 301

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
             +    S    ++  ++       Q  +      L+G          R     +     
Sbjct: 302 QASQFQDSFLRAYKDVQAFIQKTIQQCHQQGCVLSLMGR---------RRTLPNIHLSDW 352

Query: 523 DLTEGFACVVQE 534
            +          
Sbjct: 353 AVRMQAERQAVN 364


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 93/757 (12%), Positives = 190/757 (25%), Gaps = 166/757 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDL--------- 57
           ET S  P           QA I   + +      ++   +      +  +L         
Sbjct: 153 ETFSKTPFD-------PHQADICTVSISAKAHESRVVPISHKVGKNIAPELSRDEAREAV 205

Query: 58  -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL---ARTNGLPSSL 109
                      E  + +A N  FE     +     +   R     ++   +     P  L
Sbjct: 206 LDLMDRYVFTHEPTLKIAVNLAFETKFAARYKRYIL--GRVADPLMMWVRSMQIAAPGRL 263

Query: 110 KNACL-------------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            +                    +         K  +  F +    +       A      
Sbjct: 264 NSLSKPHTGWGLKTATKKTFGVTMQDFSQLLQKKGVQFFDEIDASTKEGFIYSAEDADYG 323

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                Y K  +E      K L    D E     +   +   G   + D      E   Q 
Sbjct: 324 LQHYHYWKTIIEQIPGYDKWLH---DIEMPFMRVIGIMEFWGMPWNTDTANARYEEALQA 380

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNI 270
           ++   E+I ++                       LF    + ++ +S+ T  + L     
Sbjct: 381 QENASEEIKRIIFEATGEEVAPGKTGKTGSVKLALFNKMKLPILKISDKTGNASLDEEA- 439

Query: 271 TQLAKDLILNR--LASSGSAIL--KLNTLS-----EAVSSDGRLRGTLQFYGASRTGRWS 321
                 LI  R  L +   +I   K   +      E +  D            ++  R +
Sbjct: 440 ------LIDMRFMLENKLESIDEEKYLAIPLPEGWEDIEPDANYGEPGFNGDITKQERGA 493

Query: 322 GCVFQ-------------PQNLPRQERSEEILTQTIQALNRGETIADPLGLASD------ 362
             + +              + + + ++   +++  I    +          A        
Sbjct: 494 IRIKKREFHPFKDAGIALIEQMMKIQKYTTLISSHIVGRQKYLNPFTDRIHAGYSSFTDT 553

Query: 363 ---------------------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401
                                 +RS      GK L   D +G E R++AW + ++  I+ 
Sbjct: 554 GRLNSFKPNGQNVPRPDNDDFKIRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIEL 613

Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQ 460
           F    D++  T +     P   ++K +R   K     + Y G      KT  +  G+   
Sbjct: 614 FNTNGDMHRRTASALTGKPESDITKIERTNAKAGNFGIAYGGTEYALQKTFKTDYGVRKT 673

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                    +    + +             E    + + G         ++   + +   
Sbjct: 674 LDECAAIVNAVKTAYPRIPQMQRQAILDARENGYAETIYG---------YKRLLRDINGT 724

Query: 521 WKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              L               SA  +    +  +                  Y  +  D   
Sbjct: 725 NSKLRGSDERRAGNTPIQGSAADIMKDCQNKV------------------YDRIGEDTFK 766

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639
                + ++                                  D++  +HDE++ E  D 
Sbjct: 767 QRQGETDVLFTH------------GS----------------IDMIAQIHDEMIFEMDDD 798

Query: 640 PY--FSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           P      G  + ++M + P     +P+ AE    K +
Sbjct: 799 PALVEKAGAWIKAVMERPPLPDFPVPVIAEASVGKDW 835


>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
 gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti]
          Length = 1987

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/510 (13%), Positives = 133/510 (26%), Gaps = 98/510 (19%)

Query: 168  EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
            +      + L      E  +      +   G+  D + +  L E +   ++++ E +  L
Sbjct: 1564 DQLDRTQEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTL 1623

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSG 286
              G   +   T  +   L     +         T + +L   +   LA  +I  R   S 
Sbjct: 1624 NGGRRLNFASTSEVAAAL----KVPRERNGRVKTCRQVLEKIDSP-LATLVIAYRKIESN 1678

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
             +   +  L  A+    R+ G    +  + TGR S      Q +                
Sbjct: 1679 LSRT-IEPLYRAIRDGKRIYGNSYCF--TSTGRISMHEPNLQTV---------------- 1719

Query: 347  LNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
            +   +   DP  +     RS    +S  + L+ AD   +E  VL  ++ +   +     G
Sbjct: 1720 VKDFKVEIDPGHVEVFSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGG 1779

Query: 406  EDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
            +D++    AK      +  VS E R   K +   + Y  GAK          L++ +   
Sbjct: 1780 KDVFRGIAAKWNRIEDEALVSDELRNYTKAIVYGVIYGMGAKSMAAE-----LNVDEDMA 1834

Query: 465  NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                      + +   +   +     E    + L G          R     +       
Sbjct: 1835 CTLMEQFHSTYPEIRRYADKVIQVTRERGYIETLTGR---------RRYLPAIHSTDMKK 1885

Query: 525  TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                           +        ++        +                         
Sbjct: 1886 RSEAERQAVCTTVQGSAADILKNAILRMMRNLRKYRQT---------------------- 1923

Query: 585  SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                                              +    + +  HDE++ E P      V
Sbjct: 1924 ------------------------------LRLGQVELVLHM--HDELIFEVPRDQSRKV 1951

Query: 645  GTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +  S M         LPL+ +      +
Sbjct: 1952 AKILKSSMENCAK--LSLPLRVKVKMGASW 1979


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/565 (14%), Positives = 152/565 (26%), Gaps = 166/565 (29%)

Query: 162 YCKRDVEATRELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           Y  +DVE   EL + L               E         +   G   + + + + +  
Sbjct: 25  YAAKDVEVLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLD 84

Query: 213 IAQERKKLDEDIVKLTDGIIR---------------------------------SSRQTY 239
              + K+L ++ ++  D  +                                  +     
Sbjct: 85  YEHDIKELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQ 144

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            L+  L  + G+ L  +S+  L               + LN   +       + ++ E +
Sbjct: 145 QLKSKLSAVLGVKLESVSKNALSEFA----GHHPVVQMYLNWKKAEKRR-QMITSIQEKM 199

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             DG ++ +    GA  TGR +      Q +P+                           
Sbjct: 200 RPDGFVKASYMQLGAE-TGRMTCFNPNNQQIPKD-------------------------- 232

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                R C+ A  G  +V AD   +E R+ A +A +   I+AF +GED++  T       
Sbjct: 233 --KQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVTAEAI--- 287

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                    R I K     L Y  GAK  +  A+   +                      
Sbjct: 288 ------GCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVS--------------------- 320

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                             +     + V+  W  + +G+ +  K   +             
Sbjct: 321 ------------------MTLEEAQKVRSDWFQEFEGIAKWHKKENDKA----------- 351

Query: 540 ARRVANVPRLVMRRHKRDVHIVLP-SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                N       +      I +P +  R          +                    
Sbjct: 352 ----NNPNPRFKGKKCGIQFIEIPETGMRRDLPGDANRLTVR-----------------C 390

Query: 599 ENIVQAISRDILCEGMKN----ATKNG---YDIVLTVHDEIVSETPDTPYFS-VGTLCSL 650
              VQ     IL + +        + G     I   VHDEI+    +        TL  +
Sbjct: 391 NTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVREDAAEEWAATLKQV 450

Query: 651 MTKNP-SWAKGLPLKAEGYEAKRYR 674
           M +    W   +P  AE    K ++
Sbjct: 451 MEEAEAKWLGEIPALAEVSFGKTWQ 475


>gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni]
 gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni]
          Length = 787

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/554 (12%), Positives = 142/554 (25%), Gaps = 127/554 (22%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E     L   +   G+ ++LD + K  + + +  K+L+    +L             +  
Sbjct: 289 ELPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQPF-PMDSPKEISK 347

Query: 244 YLFLITGIDLVD-------------------------MSEGTLKSILSHSNITQLAKDLI 278
            LF    +  +                          + + T   +   +N+  L   ++
Sbjct: 348 VLFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNTLLSKLTNLHPLPAVIM 407

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRL-----------RGTLQFYGASRTGRWSGCVFQP 327
             R  +          +  ++ S  RL           R +  +   + TGR    +   
Sbjct: 408 EWRHINGIL-----EKIFNSLVSTCRLIYISSTGDQPLRISPTYDVYTATGRIISIMPNL 462

Query: 328 QNLPRQERSE-----------EILTQTIQALNRGETIADPLGLASDCV-----RSCIIAS 371
           Q++P+    +           +       +          L      +     R    A 
Sbjct: 463 QSVPKDIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHAP 522

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRA 430
            G  L+  D   +E R+LA+ + +   +K  +  E    T  A   N P      + QR 
Sbjct: 523 VGGLLISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQRQ 582

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             K +  A+ Y  G++                                            
Sbjct: 583 QAKQLCYAILYGMGSQTL------------------------------------------ 600

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
             A +  +     + +  ++   + GV +  K          Q        R+  V    
Sbjct: 601 --ASQLNVSQQNAQKLIDSFLNTYPGVQKFIKTAVLTAHREGQIKTLNGHIRLLPVLNSK 658

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                                                       G+    I+Q  + +I 
Sbjct: 659 TVFDSGT-------------PYELNCNWSKKYDLRNHFAVIKAEGQAVNIIIQGSASEIA 705

Query: 611 CEGMKNATKN--------GYDIVLTVHDEIVSET-PDTPYFSVGTLCSL-MTKNPSWAK- 659
              M    +            +VL  HDE++ E  P++     G L    M+        
Sbjct: 706 KIAMLAVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNTSKHCNI 765

Query: 660 GLPLKAEGYEAKRY 673
            +PL  +      +
Sbjct: 766 DVPLPVKLRIGNNW 779


>gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis]
 gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis]
          Length = 425

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 130/437 (29%), Gaps = 43/437 (9%)

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           GI +  +      V +         K     L      +KM   +  +         +  
Sbjct: 9   GITVSGEC-EDPKVASWLLDPGCKEKTL-QHLVGQYASSKMVILEGEVPCGSLTGSLALA 66

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFK--RLIPLSDGERDLWLLDQTINDRGYRID 202
              T +  V+A            +   +L +          E  +      +   G+   
Sbjct: 67  SQNTLSGRVRACTESVLVFSMMKKLRLDLVEDGLDYAFQKVEMPVMQCLVRMELNGFGFS 126

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
                +L+ ++  + + L+++  +L +    S      +                    +
Sbjct: 127 EAECDRLKAILQAKLRTLEQEAYRLANHSF-SLTSPDDVAR------------------E 167

Query: 263 SILSHSNITQLAKDLILNRLAS-SGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTG 318
            +    ++  L + ++  R  + + + ++       L        R+  T Q +  + TG
Sbjct: 168 VLERLKSLHPLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSRIYPTSQTH--TTTG 225

Query: 319 RWSGCVFQPQNLPRQ---------ERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
           R S      QN+PR            S  + T+  + + +           +  +R+  +
Sbjct: 226 RVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSGMSCAVSMRTAFV 285

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
              G  L+ AD + +E R++A +A +    K    G D++              V  +QR
Sbjct: 286 PCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSLAGLEPGSVDDKQR 345

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              K +   + Y  GAK          L+L +   ++        +     +     +Q 
Sbjct: 346 QRAKQICYGIIYGIGAKALGE-----QLELGEEDASMYIEKFKSRFSGIRRYLKSTVEQC 400

Query: 490 PEFAVKDKLIGTACELV 506
            +      +      L 
Sbjct: 401 RKTGYVTTITKRRRYLP 417


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 36/260 (13%)

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTL 309
                   T + +L+           IL+    +         L +      + R+  + 
Sbjct: 2   KKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSF 61

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S      QN+P   +  +                          +SC +
Sbjct: 62  LQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------------------------KSCFV 96

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A +G   +  D + IE R+LA  + ++  + AFAN EDI+  T    F     + + E R
Sbjct: 97  AKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETR 152

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           ++ K +   L Y  G K          L ++           FE++   + +   ++++ 
Sbjct: 153 SVAKSINFGLIYGMGYKTLSQ-----NLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKA 207

Query: 490 PEFAVKDKLIGTACELVKKA 509
            +      L G       + 
Sbjct: 208 KQNGFITTLSGRKRYFDFEN 227


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/488 (14%), Positives = 132/488 (27%), Gaps = 130/488 (26%)

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             +D +L+  +   I  + +++  + V+              +  +L    GI L    +
Sbjct: 1   MPVDKNLLKNMLTDIQSKYQRMYIEFVRNYGVD---PFSPAKVSNWLVNKVGITLPKTQK 57

Query: 259 GTL---KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG----RLRGTLQF 311
           G L      L      +  + L+  R        LK                R+    + 
Sbjct: 58  GALSSQDKALKKYEHLKEVRQLMEIRTTKKLLDKLKELNEHTRNDPSDSDTVRIHSQFRQ 117

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA  TGR S      QN+P                                +R     S
Sbjct: 118 IGAP-TGRMSSSKPNLQNIP------------------------------PELRVLFRPS 146

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
            G  ++VAD + IE R+ A    ++  I AF  G+D++  T +       ++++KE+R +
Sbjct: 147 KGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQL 206

Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
            K +   L Y    +     A +                                     
Sbjct: 207 AKAINFGLIYGISPRSLMEYARNN------------------------------------ 230

Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
                 +     +     +   ++G  +  ++  E                         
Sbjct: 231 --YGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKL----------------------- 265

Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
               R + +     RR+  S                              +QA   D+L 
Sbjct: 266 -NKHRQITVQSLLGRRMKVSRFTD---------------------AVNYPIQASGSDMLK 303

Query: 612 EGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-WAKGLPLKA 665
             +             IV  VHDEI+ E  +        +    M K      K +P++ 
Sbjct: 304 MAVNFFGILKKDLNAYIVNLVHDEIIVEAKEDITVQAKNILEESMKKAGKILLKKVPVEY 363

Query: 666 EGYEAKRY 673
           E    K +
Sbjct: 364 EANIVKSW 371


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 30/211 (14%)

Query: 245 LFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
           LF+       GI        T +  L+         +LI      +      ++ L + V
Sbjct: 2   LFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLV 61

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
             + RL  T      S TGR S      QN+P                            
Sbjct: 62  DKNYRLHTTFNQDVVS-TGRLSSTHPNLQNIP------------------------IRST 96

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R+  IA     LV AD +  E R+ A +AG++  I  F N  DI+  T +  +  
Sbjct: 97  LGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKI 156

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           P+D+V+  QR   KV+   + Y         
Sbjct: 157 PMDQVTSNQRRNAKVINFGVLYGMSPHGLSA 187


>gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1]
          Length = 586

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 91/724 (12%), Positives = 173/724 (23%), Gaps = 196/724 (27%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLW-DRTEQSAMPSDLLQY 60
            L  DIET                   I        +     ++ D   Q  +   + Q 
Sbjct: 2   TLIFDIETDGLYNDASC----------IHCIGIHDLNAGETYVFNDVGTQQPITKGI-QL 50

Query: 61  LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L D   + V HN   ++  +  K       +   + T VL+R     + L +      + 
Sbjct: 51  LEDAD-LIVGHNIIGYDIPVISKLFPWFSRTNGVLDTLVLSRL--YHTDLLDIDQKRKWK 107

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               ++    +L A   +       +  T A+  +  Q   +Y  +DV  TR+L+K    
Sbjct: 108 HMPLQLYGRHSLEAYGYRLGEYKGSFGKT-ADWKEWSQDMEDYMIQDVNVTRKLWKHFPQ 166

Query: 180 LSDG---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI----- 231
           + +    E  +  +       G+  D +   +L + +  E   L   + K    +     
Sbjct: 167 IPEWVQLEHRVAQILTEQEIYGWYFDENAARELAQTLYTELDDLKGVLRKRYPYVAGREF 226

Query: 232 ---------------------IRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266
                                  S      +   +  + G      ++       + +L 
Sbjct: 227 TPKRVNRSLGYVEGATCTKLVEFSPTSRDHIAWVMKNLHGWKPDKKTKAGKTAIDEIVLK 286

Query: 267 HSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324
                +  +    +         +  K N   +    D R+        A+ T R +   
Sbjct: 287 EIGTEEALQFFRCLEITKQLGMLSEGK-NAWLKLSRKD-RVHHHCS--VATVTHRCAHRN 342

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
                +P                                 R    AS G  +V ADL+GI
Sbjct: 343 PNLAQVPSD----------------------------LNFRRLFCASPGHIMVGADLSGI 374

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E R+LA          A  +             +          R + K +  A  Y  G
Sbjct: 375 ELRMLAHY-------LARYDDGRYGDILLHGDIHQENADKIGISRRLVKTVTYAFLYGAG 427

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            +            L                                            +
Sbjct: 428 DQKI---GLSYDQGLSPDKAKQ-----------------------------------KGK 449

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
            +++A+     G+ +L +   +                                 I    
Sbjct: 450 EIRQAYMDAIPGLEKLVEATKKAADR---------------------------GFIRSID 482

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-------NA 617
            R +                           K    ++Q+ +  I    M          
Sbjct: 483 GRHINVDSSH---------------------KALNMLLQSSAGCIAKRWMVIANDNFPTI 521

Query: 618 TK---NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                     +  +HDE+  E        + T   L       A       +P+ AEG  
Sbjct: 522 DNEYLAHTHQLAFIHDELQFECLPLYAEDLKTHLEL---CAELAGEYYNLRIPIAAEGKI 578

Query: 670 AKRY 673
              +
Sbjct: 579 GSTW 582


>gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
 gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
          Length = 927

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/521 (14%), Positives = 137/521 (26%), Gaps = 116/521 (22%)

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           ++F      D      +          E         +   G   D            Q 
Sbjct: 497 EVFAMKRIFDDLKVSAIQSSSEESFHLEMSSCQSVLNMFYTGISFDHSKCNSFITNTRQR 556

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHS 268
            + L+E+I +L  G   +   +  +   +F   G+   + S          T K IL   
Sbjct: 557 IELLEEEIWRLAHGKF-NIDSSNEVANVIFHRLGLIYPETSSCKMKQRHLPTNKLILEQM 615

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
                    IL       +    L  L  ++ S  R+    +    + TGR    V   Q
Sbjct: 616 KNQHKIVGKILEYRHIQHTLTQCL--LPLSIYST-RIH--CRMEMCTATGRILTTVPNLQ 670

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N+P++                       +       R    AS+G+ L+ AD   +E RV
Sbjct: 671 NVPKR-----------------------VSTEGLSARQLFKASSGRILISADFKQLELRV 707

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           LA ++ +   I+      D++     +             R + K +   L Y  G K  
Sbjct: 708 LAHLSNDSKLIELICADRDLFGELSVEWN---------FSRDVVKQLCYGLIYGMGPKTL 758

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             +       ++         S F  +     +          +                
Sbjct: 759 AELTK-----VKVAEAEKMLCSFFSMFPGLYLYLSNKG----TYLYVTG----------- 798

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                   V     +  E  +        +  ++                   L S    
Sbjct: 799 --------VRSYINETKEHVSKEECVQTILGRKKF------------------LKSGL-- 830

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624
                           +++ R            +Q  + +I    +          G  I
Sbjct: 831 -----------TGEEKARVERVA------VNYTIQGTASEIFKVAIVEIESKIKAYGARI 873

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664
           VLT+HDE + E P+     +  +    M  + S    +P+K
Sbjct: 874 VLTIHDEFLVECPENRTPVISEIIRDCMQSSLSDILRVPMK 914


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 75/483 (15%), Positives = 151/483 (31%), Gaps = 95/483 (19%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVK-------LW--------DRTEQSAMPSDLLQ 59
                G+        + L  +++              +           +  A+   + +
Sbjct: 291 DAEGTGLVWCKGSTRVILNQFSYRPGESFMAPTHPLYYEKVFNDPNPGAKAEALQGQVKR 350

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
           +L DE V  +AHN  F+  +  +  GI++       T ++A       +  SL +     
Sbjct: 351 FLEDERVRKLAHNLKFDHQVSAR-EGIEVRGW-LHDTQLMAFFADENMMSKSLDDCTRVW 408

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                          +A      +D PP D   A+          Y   D +A   L +R
Sbjct: 409 VPEMAGYADNFN---MAIDKSKMMDVPPDDILDADGKVVQYGMRNYAGGDTDACLRLAQR 465

Query: 177 LIPLSDGERDLWLLDQTINDR------------GYRIDLDLVLKLQELIAQERKKLDEDI 224
           L  +   +   +   + I               G  +D + +  L + +AQ      ++I
Sbjct: 466 LDKILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLADQVAQYTDAKYDEI 525

Query: 225 ----------VKLTDGIIRSSRQTYALRMYLFLI--TGIDLVDMSEGT--------LKSI 264
                       L  G   S  +   +R  LF     G+     ++ T        + S+
Sbjct: 526 VRLIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKSTAKLPPAQRVPSV 585

Query: 265 LSHSNITQLAKDL---------ILNRLASSGSAILKL------NTLSEAVSSDGRLRGTL 309
            +  ++                 ++ L         +      +   + ++ DG +  + 
Sbjct: 586 STKDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFWQYIAPDGAIYPSY 645

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
           + + A+ TGR +      QN P++ R  +                               
Sbjct: 646 KLH-ATVTGRSASDNPNGQNFPKRGRFAKSYN------------------------KVFK 680

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G KLV ADL+ IE R+ AW+A E   ++ +    DI+ +T A       +  ++ + 
Sbjct: 681 ARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAATAGWTDEFFAQHKN 740

Query: 430 AIG 432
           +  
Sbjct: 741 SDA 743


>gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299]
 gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299]
          Length = 953

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/514 (13%), Positives = 126/514 (24%), Gaps = 112/514 (21%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYALR 242
           E  +      +   G   D   V      + ++   ++E     + DG   +      + 
Sbjct: 506 EGKVAAALGQMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVNLASPQQVA 565

Query: 243 MYLFLITGIDLVD------------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
             L+    +                 ++      L    +  L   ++  R      A+ 
Sbjct: 566 EALYGTLKLPPPSSNAQQGAKTAQLTTKDDALRSLRDKRLHPLPGLVLEYR------AVS 619

Query: 291 KLNTLSEA---VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           K   +  +   ++   RLR        + TGR S      Q + + E  E  L       
Sbjct: 620 KTIAMCNSYASMARGKRLRCDWN-NTRTATGRLSSTNPNIQAVGKDETGEFSL------- 671

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            R    A  GK L+ AD + IE R+LA +AG+   +        
Sbjct: 672 -----------------RRAFSAPPGKVLLAADYSQIELRMLAHLAGDRGLVALLRRQIT 714

Query: 408 IYVTTYAKAFNT-----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
                + + +N      P   V+KE R   K     L Y  G            L     
Sbjct: 715 DGGDVFERIWNAGRGAPPETPVAKEDRDRAKRTVYGLLYGQGKTGLAEK-----LGCTGD 769

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                  + F  +    +     +++           G    L          G     +
Sbjct: 770 VAQGLINAFFRAFPGVRAFVTRTKERARVEKRVVLPSGRHRPL---------PGFASADQ 820

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
               G                       + +      + +   R L  +   G       
Sbjct: 821 RERAGAERKAVN---------------SLIQGSAADLMKIAMCRWLAAASPVGFEPTTTE 865

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET---PDT 639
                    T                               +V  +HDE++ E    P  
Sbjct: 866 HADVASTAAT---------------------------LPARLVAQIHDELLFECEDSPTA 898

Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              +   + + M +       +P  A+    + +
Sbjct: 899 VRAAAQVVAACMERAVP-QLAVPTPAKVSVGRTW 931


>gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5]
 gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5]
          Length = 633

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/680 (13%), Positives = 173/680 (25%), Gaps = 149/680 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            +     Y     +   + A  D     +D  EQ      L++         V HN+ F+
Sbjct: 27  TECTGLKYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYKGTIVCHNASFD 85

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLP--------------SSLKNACLALNFSEHL 122
             +     GI +P  +   T + A                     SL             
Sbjct: 86  YRM-SLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYLAKKY---VGA 141

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR------ 176
            K  E    +A    G                   L  +Y   D E T EL+        
Sbjct: 142 QKYAEIYDELAAMFGGKATRKTQMPNLYRAPS--GLVRKYACPDAELTLELWLEQQELIA 199

Query: 177 ---LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              L  +   ER +         RG R+DL+   +    +    ++    + +L      
Sbjct: 200 KRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREF- 258

Query: 234 SSRQTYALRMYL--FLITGIDLVDMSEGTLKSIL---------SHSNITQLAKDLILNRL 282
           +      +R         G+         L+            +   +       +L   
Sbjct: 259 NPNSPKQVREVFGAKEERGV-WTSRDGTVLERTATGNPCLDADALRAMKDPLAAAVLELR 317

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFY----GASRTGRWSGCVFQPQNLPRQERSEE 338
           ++  +    L       S  GR+   +       G + TGR S      Q +P + +   
Sbjct: 318 SNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKR-- 375

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--AGED 396
                                 +  ++   +   G+  + +D+A  E R+ A +  A   
Sbjct: 376 ---------------------IAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNP 414

Query: 397 WKIKAFANGEDIYVTTYA-KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +A+A   ++ +  +       P +     Q    K M L + +  G      +A   
Sbjct: 415 AIARAYAENPELDLHQWVGDLMGIPRNASYSGQA-NAKQMNLGMIFNRGDG---AVADSL 470

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+   ++ +          +++A                     G   + V  A+  + Q
Sbjct: 471 GM-PWEWCEFTDKKGDLIRYKKA---------------------GPEAKAVIAAYHTQIQ 508

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV  L     +                                 I     RRL + +   
Sbjct: 509 GVKTLATRAQKIAEERG--------------------------WIQTAHGRRLRFPNGYK 542

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEI 632
                               K +  ++QA + D   E              ++L  HD  
Sbjct: 543 SY------------------KASGILIQATAADENKENWLRIEDALGSDGSMILNTHDSY 584

Query: 633 VSETPDT---PYFSVGTLCS 649
                +     +  V     
Sbjct: 585 SMSVDENWKPIWERVKKAVE 604


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 32/196 (16%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           D+  +      L   L DE  + V  N  ++R +     GI++    +  T + +     
Sbjct: 1   DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNS 58

Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 + +     L       +   GK                      +  A +  G 
Sbjct: 59  VAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGR 103

Query: 162 YCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           Y   D + T +L  ++ P               E  L  +   I   G +ID  ++    
Sbjct: 104 YAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHS 163

Query: 211 ELIAQERKKLDEDIVK 226
           E +     +L++   +
Sbjct: 164 EELTLRLAELEKKAHE 179


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/572 (12%), Positives = 145/572 (25%), Gaps = 121/572 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  DIET       ++G   Y+        A+AW       +  T++      L ++   
Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHKGCAFKVTDK----VQLKRFFES 225

Query: 64  ETVMCVAHNSLFERILFKKT-------------LGIDIPSKRWICTSVLARTNGLPSSLK 110
            + + + HN+ F+                     G+    +    T ++A      ++  
Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L   E   +        A   K  ++ P       N       +  + K   +  
Sbjct: 282 TQGNILGLKELSHEFV---GNYAIDVKHVLNHPLATVLEYNLKDTLATYWVFNKYKPKML 338

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +    +                I   G  +++D V+ +++ +  +     E I      
Sbjct: 339 SDNQDSIYKTI--MLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALEQIYASEHV 396

Query: 231 I-------------------------------IRSSRQTYALRMYLFLITGID------- 252
                                                 T  L + L+   G+        
Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGLPILDYTPN 456

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
               +  GT++ ++ H+    +   L  +L            +    +A   D       
Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516

Query: 310 QFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            F  G + + R S      Q LP                                ++ C 
Sbjct: 517 SFNLGGTLSNRLSSSNPNLQQLPSGST------------------------YGKTIKQCF 552

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIK-----AFANGEDIYVTTYAKAFNT---- 419
            A +    V AD   +E R+   +  +  K K       A+    Y     +  +     
Sbjct: 553 QAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFANQMPDIINTK 612

Query: 420 ----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                I     E R   K    AL Y G     +           +       T+  + +
Sbjct: 613 ESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAKEIETNYHKMY 667

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           E +++      +Q  +    D   G       
Sbjct: 668 EVSDAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/572 (12%), Positives = 143/572 (25%), Gaps = 121/572 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  DIET       ++G   Y+        A+AW       +  T++      L ++   
Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHEGCAFKVTDK----VQLKRFFES 225

Query: 64  ETVMCVAHNSLFERILFKKT-------------LGIDIPSKRWICTSVLARTNGLPSSLK 110
            + + + HN+ F+                     G+    +    T ++A      ++  
Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L   E   +        A   K  ++ P       N       +  + K   +  
Sbjct: 282 TQGNILGLKELSHEFV---GNYAIDVKHVLNHPLATVLEYNLKDTLGTYWVFNKYKPKML 338

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +    +                I   G  +++D V+ +++ +  +     E I      
Sbjct: 339 SDNQDSIYKTI--MLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALEQIYASEHV 396

Query: 231 I-------------------------------IRSSRQTYALRMYLFLITGID------- 252
                                                    L + L+   G+        
Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGLPILDYTPN 456

Query: 253 -LVDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
               +  GT++ ++ H+    +   L  +L            +    +A   D       
Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516

Query: 310 QFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            F  G + + R S      Q LP                                ++ C 
Sbjct: 517 SFNLGGTLSNRLSSSNPNLQQLPSGST------------------------FGKTIKQCF 552

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIK-----AFANGEDIYVTTYAKAFNT---- 419
            A +    V AD   +E R+   +  +  K K       A+    Y     +  +     
Sbjct: 553 QAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFVNQMPDIINTK 612

Query: 420 ----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                I     E R   K    AL Y G     +           +       T+  + +
Sbjct: 613 ESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAKEIETNYHKMY 667

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           E + +      +Q  +    D   G       
Sbjct: 668 EVSNAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 87/626 (13%), Positives = 169/626 (26%), Gaps = 107/626 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRT----EQSAMPSDLLQ 59
            D+ET S             E   I L   A +   V++   D      E+S +   L  
Sbjct: 44  FDLETFS----RASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQKLES 99

Query: 60  Y---------LRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLART------- 102
                     L +  V  V H+  FE R +  K    + P +    T ++++        
Sbjct: 100 LGFWTTLQERLANPQVEVVGHSLDFEQRWMLAKY---NFPIRNLRDTKLMSQVYWAGLDP 156

Query: 103 -----NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                +G P SL++ CL L  S                 K    S        N   +  
Sbjct: 157 WLLKQHGKPHSLESVCLRLGISID---------------KSRQTSDWGWGDLGNGQLSNN 201

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLK 208
            F  Y   D   T ++   L P             E         ++  G  +D  ++  
Sbjct: 202 QF-NYAANDASITIKVHDLLEPRLKEIGVWTSYLIECAASPAFAQMSHYGMPVDEGVLAD 260

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           +        + L E +       +        L   +     + L   +   L  +    
Sbjct: 261 VTVAYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRRFRVTLKSANVDDLSKLWGIP 320

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
            +  ++         ++ + +  L+++   V  +G +RG          GR S      Q
Sbjct: 321 EVRLISVI------KTTKTYVDYLHSIQAQV-RNGFVRGKYTQINRKGFGRSSCSEPNLQ 373

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           N P        LT                      +RS     +G   V  D + + ARV
Sbjct: 374 NPPSPTTFPPELTPY----------------NLPPIRSVFRTHSGCIGVWCDASKLHARV 417

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
               + +   I  F +            F T  +K+S+ +       E         +  
Sbjct: 418 ATQASLDPELIARFNSPH-------GDIFCTIAEKLSQLEGMGSDWTE---------ENI 461

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           +             +  +++ S    +            +         L   + +   K
Sbjct: 462 RRWTLDKHHANYAQASRLRAMSKSVHYGSQNLQGWRTLQKTIRTKSGIVLSDESAKNSIK 521

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
           AWR  ++ +      + E                V  +  +  R      ++   + R +
Sbjct: 522 AWRQTYKVLASFQHSIVEKANH--------DLPSVLGMHLIQSRSKFGLGYVRCLTGRGV 573

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYG 594
                + +         +   ++  G
Sbjct: 574 FLPKWRQNVEDGREPKIEGKWKKFNG 599


>gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2]
 gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2]
          Length = 633

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 91/680 (13%), Positives = 173/680 (25%), Gaps = 149/680 (21%)

Query: 17  PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76
            +     Y     +   + A  D     +D  EQ      L++         V HN+ F+
Sbjct: 27  TECTGLKYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYKGTIVCHNASFD 85

Query: 77  RILFKKTLGIDIPSKRWICTSVLARTNGLP--------------SSLKNACLALNFSEHL 122
             +     GI +P  +   T + A                     SL             
Sbjct: 86  YRM-SLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYLAKKY---VGA 141

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR------ 176
            K  E    +A    G                   L  +Y   D E T EL+        
Sbjct: 142 QKYAEIYDELAAMFGGKATRKTQMPNLYRAPS--GLVRKYACPDAELTLELWLEQQELIA 199

Query: 177 ---LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              L  +   ER +         RG R+DL+   +    +    ++    + +L      
Sbjct: 200 KRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREF- 258

Query: 234 SSRQTYALRMYL--FLITGIDLVDMSEGTLKSIL---------SHSNITQLAKDLILNRL 282
           +      +R         G+         L+            +   +       +L   
Sbjct: 259 NPNSPKQVREVFGAKEERGV-WTSRDGTILERTATGNPCLDADALRAMKDPLAAAVLELR 317

Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFY----GASRTGRWSGCVFQPQNLPRQERSEE 338
           ++  +    L       S  GR+   +       G + TGR S      Q +P + +   
Sbjct: 318 SNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKR-- 375

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--AGED 396
                                 +  ++   +   G+  + +D+A  E R+ A +  A   
Sbjct: 376 ---------------------IAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNP 414

Query: 397 WKIKAFANGEDIYVTTYA-KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              +A+A   ++ +  +       P +     Q    K M L + +  G      +A   
Sbjct: 415 AIARAYAENPELDLHQWVGDLMGIPRNASYSGQA-NAKQMNLGMIFNRGDG---AVADSL 470

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           G+   ++ +          +++A                     G   + V  A+  + Q
Sbjct: 471 GM-PWEWCEFTDKKGDLIRYKKA---------------------GPEAKAVIAAYHTQIQ 508

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           GV  L     +                                 I     RRL + +   
Sbjct: 509 GVKTLATRAQKIAEERG--------------------------WIQTAHGRRLRFPNGYK 542

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEI 632
                               K +  ++QA + D   E              ++L  HD  
Sbjct: 543 SY------------------KASGILIQATAADENKENWLRIEDALGSDGSMILNTHDSY 584

Query: 633 VSETPDT---PYFSVGTLCS 649
                +     +  V     
Sbjct: 585 SMSVDENWKPIWERVKKAVE 604


>gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1]
 gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1]
          Length = 871

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 80/582 (13%), Positives = 150/582 (25%), Gaps = 118/582 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58
           ++  DIE  S   +   G         I    +AW++          +  +  +      
Sbjct: 185 EISCDIEGFSL-SMFDSG---------IATIGFAWNEHDAVQIQCDYREMIQDENKHHGY 234

Query: 59  --QYLRDETVMCVA----------HNSLFERILFKK-------------TLGIDIPSKRW 93
                    V+             H +  +  +                  G++I + R 
Sbjct: 235 YEPNAEMREVLKWFFTEYPGRIIYHRANHDVKVLIYTLFMEHDLDKEGMHRGLEIMTPRM 294

Query: 94  ICTSVLARTN-----GLPSSLKNACLAL--NFSEHLTKME---EGKALIARFCKGSIDSP 143
             T ++A         +  SLK+       N+++   K         L+      ++ + 
Sbjct: 295 DDTKIIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIKDIRLITLDDLMKYNAVDAVTTV 354

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGY--- 199
                    +   Q    Y     +     +   L+ +    R +  ++  +N+      
Sbjct: 355 WVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTELNNLRDGYH 414

Query: 200 -------RIDLDLVLKLQELIAQERKKLDEDIV--KLTDGIIRSSRQTYALRMYLFLITG 250
                   +    VL     + +   KL            I  +      +   L  +  
Sbjct: 415 NTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQVARLLHEVLD 474

Query: 251 ID--------LVDMSEGTLKSILSHSNITQLAKDLILNRLASS---GSAILKLNTLSEAV 299
           +             S GTLK +L+H       KDLI   +            +       
Sbjct: 475 LPVLDVTATKQPSTSGGTLKKLLNHIKAE-PYKDLIQALMDLGAVEKVISAFMPAFKAGR 533

Query: 300 SS-DGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
              DG +     F  G + +GR S      QNLP                          
Sbjct: 534 MKADGMMYLHGSFNLGGTISGRLSSSDPNLQNLPAGST---------------------- 571

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 V+S   A  G     AD A +E R+ A +  +  KIK + +G D +       +
Sbjct: 572 --YGKLVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTDGYDGHSMRTFAFW 629

Query: 418 NTPID-------------KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
               D             KV  + R+  K     L Y G       M     +       
Sbjct: 630 PDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGSW-----MGLVRQVGFSDEEA 684

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
               T+  + +  +        D+  +    +          
Sbjct: 685 QEIETNYNKLYRVSNEWVAGEIDKATKTGYVELAFNLRLRTP 726


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 14/186 (7%)

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +R   IA +G K+V AD + IE R++A +A ++  I AFA G+DI+  T A
Sbjct: 2   PIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAA 61

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474
           + F   +D+V+ EQR   K +   L Y               L + +          F+ 
Sbjct: 62  EIFGLALDQVTSEQRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQR 116

Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
           +   +     +++   E    + L G    L           +        +    V   
Sbjct: 117 YPAVQQFMTGIRESASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAIN 167

Query: 535 GGSISA 540
                 
Sbjct: 168 APMQGT 173


>gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum]
          Length = 989

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/616 (12%), Positives = 166/616 (26%), Gaps = 158/616 (25%)

Query: 97  SVLARTNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
            +++    +    +     A        K      L+  F +    S   D      +  
Sbjct: 446 MLMSMDIHVKKGIMDPRVGAWLLDPDKYKDTTLDTLVREFSQDKKLSTNVDE-----LNH 500

Query: 156 WQLFGEYCKRDVEATRELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208
           +     +C R     ++LF R           ++ E  L ++   +   G   D      
Sbjct: 501 YDRSFHHCYRSFVLMKQLFTRFHFNRDLYKIFNEMEMPLLVILAKMEYNGIGFDDATCQN 560

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT---GIDLVDMSE------G 259
            +  + Q+ + ++     +   +  S      +   L+ +     I   +  +       
Sbjct: 561 TKYEVLQKLQYIEVKARLMVPDLKFSMSSKEDMSNILYNVLRVVDIPKANRGKIVKRHHS 620

Query: 260 TLKSILSHSNITQLA-KDLILNRLASSGSAILKLNTLSEA--VSSDG---RLRGTLQFYG 313
           T  +IL      + A   +++     S   +  ++ L +    + D    R+  T+    
Sbjct: 621 TKAAILEAVPEEKAAFPKMLIEWRKLSHHLLNYVHVLFKFGYYNPDYEMMRIYTTIMQTN 680

Query: 314 ASRTGRWSGCVFQPQ-----------------------------------------NLPR 332
              TGR +      Q                                         N+  
Sbjct: 681 VP-TGRLAMTYPNLQSIANAFTFRESPISFSDVSTNNVSKASSSASQHCSPPYDHHNVTV 739

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                   +++I +L+  E   D   L +  +R   I   G   + AD + IE R+LA +
Sbjct: 740 DYSPSPNESKSIGSLSTLELKEDNCRLITVRIRDSFIPRKGYLFLSADYSQIELRILAHL 799

Query: 393 AGEDWKIKAFANGEDIY--VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
           + +   +    N +  +           T I+ V+ E+R I K     L Y         
Sbjct: 800 SEDKLLLDGLNNPDFDFFKTMFVQMNKGTRIEDVTAEERDIAKE----LCYG-------- 847

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G+     +  +                                      ++K+  
Sbjct: 848 --ILYGMGTWSLANKLDRD------------------------------EKEARILKEKL 875

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
              ++ +++    + + +  V         +R  +                         
Sbjct: 876 YNTYRDLIKYIDSVKKRYHQVGYVETFYHRKRFLDNN----------------------- 912

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624
                        T   +       K   +I Q  + DI+ + M +        K    +
Sbjct: 913 -------------TRDKVEIEKEKRKAVNSIPQGTAADIIKQAMISIDRIFEEQKTPALM 959

Query: 625 VLTVHDEIVSETPDTP 640
           VL +HDE++ E  +  
Sbjct: 960 VLQIHDELLFEVREDS 975


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 136/219 (62%), Gaps = 8/219 (3%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
           M   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GAS
Sbjct: 2   MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGAS 61

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372
           RTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA  
Sbjct: 62  RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQ 121

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427
           GKKLV++DL+ IE R+LAW+AGE+WK+KAF+  ++      Y   YA+AF    + V+K 
Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTKA 181

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           QR IGKVMEL LGY GG   F T A   GLDL + ++  
Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAA 220


>gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
 gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
          Length = 160

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 11/163 (6%)

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---- 574
             WK L       ++   +           + M+  +  + + LPS R L Y+  +    
Sbjct: 2   AFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEH 56

Query: 575 GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632
           G  SY+ T   T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDE+
Sbjct: 57  GALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEM 116

Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           ++E  D   F+   L +LM   P WA+GLPL AEG++  RYRK
Sbjct: 117 ITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 159


>gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1]
          Length = 874

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/580 (13%), Positives = 147/580 (25%), Gaps = 110/580 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61
           L  DIE  S +             A +    + W+  +      D T        + Q L
Sbjct: 181 LTCDIEGFSLKHF----------DAGVGTITFCWNQHEGIAFEVDNTRTKEEDPVIRQAL 230

Query: 62  -------RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101
                  R+     + HN  ++  +    L             G+D+  + +  T ++  
Sbjct: 231 KTFFYRFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENFEDTQIITY 290

Query: 102 TN-----GLPSSLKNACLAL--NFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRAN 151
                  G    LK        N++    K         L+       + +         
Sbjct: 291 LATNSCAGNELGLKAQAQEFAGNYAVEEIKDITLIDLDKLLEYNLVDGLSTWYVYNKHYQ 350

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD----QTINDRGYRIDL---- 203
            +      G Y          +  +L  L      +  LD           +++      
Sbjct: 351 TMITDLQLGTYENFKEWVVDIIQMQLTGLPVNMDKVVALDKLLTAESEHNIWKMMQTKIV 410

Query: 204 ---------DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI--TGID 252
                    + + K    +  +     +  +     +  +      L+  L+     G+ 
Sbjct: 411 QGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEVAYNPGSAPQLQRLLYSKEFLGLP 470

Query: 253 L--------VDMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAV-SS 301
           +              TL+ +L+   S  T+    ++L   AS+      L    +A    
Sbjct: 471 VLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILLEYKASAIILSTFLPAFLKAHPGP 530

Query: 302 DGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           DG       F  G + +GR S      QN+P                             
Sbjct: 531 DGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP------------------SSAGGPLKSRL 572

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
           +  ++ C  A  G   V  D   +E R+ A    +  K+K + +G D +       F   
Sbjct: 573 AKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGDQ 632

Query: 421 IDKVSK--------------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           +  +                  R   K    AL YQG                 +    +
Sbjct: 633 MPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQGTYHTLMQNC-----GFSKEKAQM 687

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                 + +  +  +     +Q           G      
Sbjct: 688 IENKYRQMYSVSIDYVNEKLEQATHDGYITVAFGLRVRTP 727


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 8/219 (3%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
           M   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS DGRLRGT QF GAS
Sbjct: 2   MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGAS 61

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372
           RTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA  
Sbjct: 62  RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQ 121

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427
           GKKLV++DL+ IE R+LAW+AGE+WK+KAF+  ++      Y   YA+AFN     V+K 
Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKA 181

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           QR IGKVMEL LGY GG   F T A   GL+L + ++  
Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAA 220


>gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
          Length = 154

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 78/153 (50%), Gaps = 6/153 (3%)

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583
                               + ++  +  + + LPS R L Y+  +    G  SY+ T  
Sbjct: 1   MQCAVTDAIGHPETAHTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 60

Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642
            T +  R  TYGGKL ENI QA+SRD+L   M      GY IVLTVHDEI++E  D   F
Sbjct: 61  VTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAF 120

Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           +   L +LM   P WA+GLPL AEG+E  RYRK
Sbjct: 121 NAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 153


>gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3]
          Length = 582

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 169/687 (24%), Gaps = 184/687 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLW-DRTEQSAMPSDLLQY 60
            L  DIET                   I        + +   ++ D   Q  +   + Q 
Sbjct: 2   TLIFDIETDGLYNDVTC----------IHCIGIHDLNTKETYVFNDVGTQQPITKGI-QL 50

Query: 61  LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L D  ++ V HN   ++  + +K         R + T VL+R     + L       N+ 
Sbjct: 51  LEDADII-VGHNIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRL--YHADLLKTDQKRNWK 107

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               ++    +L A   +       +  T  +     Q   +Y  +DV  TR+L+K    
Sbjct: 108 HMPVQLWGRHSLEAYGYRLGEYKGCFGKT-TDWKDWSQEMEDYMVQDVNITRKLWKDFPE 166

Query: 180 LSDG---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG------ 230
           + +    E  +  +       G+  D     +L+  + +E + L   +            
Sbjct: 167 IPEWVQLEHRVAQILTEQEIHGWYFDEPAAWELESTLRRELESLKAVLRNRHPFILGEEF 226

Query: 231 --------------------IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                                  +      +   L      +  + +E     +      
Sbjct: 227 TPKRPNSTQGYFTGATFTRLKEMNPTSRDHIAYILQKFYDWEPTERTEKGKPVVDEIVLK 286

Query: 271 TQLAKDLILNRLASSGSA-----ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              ++  +        +         +N   + V +D R+        A+ T R +    
Sbjct: 287 DIGSEIALQFFRCLELTKQIGMLTEGVNAWLKLVRND-RIHHHCS--VATNTHRCAHRKP 343

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
               +P +                               R    A+ G  +V ADLAGIE
Sbjct: 344 NLAQVPAEA----------------------------EFRKLFRATPGMVMVGADLAGIE 375

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA          A  +G            +          R + K +  A  Y  G 
Sbjct: 376 LRMLAHY-------LAQWDGGRYGDVLLNGDIHQENADKIGISRRLVKTVTYAFLYGAGN 428

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
           +            L                                            + 
Sbjct: 429 QKI---GLSYDQSLSPDKAK-----------------------------------KKGQE 450

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           +++A+     G+ +L +   +                                +I     
Sbjct: 451 IRQAYMDAIPGLRKLVEATKKAANR---------------------------GYIRAIDG 483

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC-------EGMKNAT 618
           R +                           K    ++Q+ +  I         E +  A 
Sbjct: 484 RHISVDSPH---------------------KSLNYLLQSSAGVIAKRWLALTHEAIIRAD 522

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG 645
                 +  +HDE+  ET       + 
Sbjct: 523 -IKAHQLAFIHDELQFETTPEHVEDLK 548


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 8/219 (3%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
           M   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GAS
Sbjct: 2   MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGAS 61

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372
           RTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA  
Sbjct: 62  RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPX 121

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427
           GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y   YA+AF      V+K 
Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTKA 181

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           QR IGKVMEL LGY GG   F T A   GLDL + ++  
Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAA 220


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 96/371 (25%), Gaps = 102/371 (27%)

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            L       G + TGR S      QNLPR           I A   G    +        
Sbjct: 630 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GITAAVAGNDAEEDGDDDLLG 679

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R C +A+ G  L+  D   IE RVLA + G+   ++A     DI+       F      
Sbjct: 680 FRRCFVAAGGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KP 737

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           VS E+R++ K +   + Y  G                                       
Sbjct: 738 VSTEERSLAKRVVFGVLYGAGP-------------------------------------- 759

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                    A    +       +         G+    + + E                 
Sbjct: 760 ------KTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEARANG----------- 802

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                           +   S R     D++       +   +             ++VQ
Sbjct: 803 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 838

Query: 604 AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
             + D++   M            ++   ++  +HDE+V          V  L  S M+  
Sbjct: 839 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 898

Query: 655 PSWAKGLPLKA 665
                 +PL  
Sbjct: 899 MQLL--VPLSV 907


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 95/371 (25%), Gaps = 102/371 (27%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             L       G + TGR S      QNLPR           I A   G    +        
Sbjct: 957  TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GIAAAVAGNDAEEDGEEDLLG 1006

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
             R C +A+ G  L+  D   IE RVLA + G+   + A     DI+       F      
Sbjct: 1007 FRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KP 1064

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            VS E+R++ K +   + Y  G                                       
Sbjct: 1065 VSTEERSLAKRVVFGVLYGAGP-------------------------------------- 1086

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                     A    +       +         G+    + + E                 
Sbjct: 1087 ------KTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANG----------- 1129

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                            +   S R     D++       +   +             ++VQ
Sbjct: 1130 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 1165

Query: 604  AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
              + D++   M            ++   ++  +HDE+V          V  L  S M+  
Sbjct: 1166 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 1225

Query: 655  PSWAKGLPLKA 665
                  +PL  
Sbjct: 1226 MQLL--VPLSV 1234


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 95/371 (25%), Gaps = 102/371 (27%)

Query: 304  RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             L       G + TGR S      QNLPR           I A   G    +        
Sbjct: 957  TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GIAAAVAGNDAEEDGEEDLLG 1006

Query: 364  VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
             R C +A+ G  L+  D   IE RVLA + G+   + A     DI+       F      
Sbjct: 1007 FRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KP 1064

Query: 424  VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
            VS E+R++ K +   + Y  G                                       
Sbjct: 1065 VSTEERSLAKRVVFGVLYGAGP-------------------------------------- 1086

Query: 484  WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                     A    +       +         G+    + + E                 
Sbjct: 1087 ------KTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANG----------- 1129

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                            +   S R     D++       +   +             ++VQ
Sbjct: 1130 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 1165

Query: 604  AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
              + D++   M            ++   ++  +HDE+V          V  L  S M+  
Sbjct: 1166 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 1225

Query: 655  PSWAKGLPLKA 665
                  +PL  
Sbjct: 1226 MQLL--VPLSV 1234


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/629 (13%), Positives = 158/629 (25%), Gaps = 191/629 (30%)

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW--------- 188
             + +              ++   Y   D +    +   L  +    + +W         
Sbjct: 138 EPLANEVDGGNFNYDWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPS 197

Query: 189 --LLDQTINDRGYRIDLDLVLKLQE--------------------LIAQERKKLDEDIVK 226
             +    I   G     D +  + E                     + ++  +L E  V+
Sbjct: 198 AIVALARIESNGIYAQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVE 257

Query: 227 LTDGII-------------------RSSRQTYALRMYLFLITGIDLV------------- 254
                                     +          L+ I GI L              
Sbjct: 258 EMAVPPAKRDDDIAKLRNKYKNKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDV 317

Query: 255 ------------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SS 301
                          +  L  I+ H    ++   L+L               L   + + 
Sbjct: 318 GKPENKLTWEDYKTDKKALNYIVDHFPDQKVFASLLLEHSLVKTRKNNFTAKLLNFISNK 377

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+ G+    G + T R S      Q LP +  + +                       
Sbjct: 378 DGRVHGSFNATG-TETTRLSSNNPNMQQLPAKTSNPK------------------RFDYQ 418

Query: 362 DCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             ++     A     L+  D + +E R+LA  AG++   +AF +G D++  T +  +  P
Sbjct: 419 YPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMP 478

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +DKV  E                                            F    +A +
Sbjct: 479 VDKVPAE--------------------------------------------FRKKAKAVN 494

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             +   +    FA K  +     E + + + A    +      + E     +++G   + 
Sbjct: 495 FGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTL 551

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
           +    + R    + K+  +  L                                 K    
Sbjct: 552 QGHRRLIRDAFSKDKQIQNGAL--------------------------------RKSVNT 579

Query: 601 IVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK 653
            +Q          +               +VLTVHD IV + P      +  +C  +M  
Sbjct: 580 KIQGTGAYCTNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMARVCKTIMEN 639

Query: 654 NP------SWAKG---LPLKAEGYEAKRY 673
            P       W       P++A+      Y
Sbjct: 640 LPIDFLSIEWKGEKTKYPIEADIEIGTNY 668


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 122/434 (28%), Gaps = 69/434 (15%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           DIET         G+  + E   ITL  Y  DDE  + +    +     D+ +    +  
Sbjct: 22  DIETT--------GLDYFTE--KITLVQYGTDDEHQQWY---TEEPTIEDIKEL---KKR 65

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---NACLALNFSEHLT 123
               HN  F+        G+ +P      + VL    G   SL     A   L       
Sbjct: 66  TLFWHNGKFDTKFIAYHFGVMLPIHG--DSMVLLHALGYSDSLSLKVAAAKLLGVENWDI 123

Query: 124 K--MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-----ELFKR 176
           +  ++  K       K           +  +     L      +  +         +   
Sbjct: 124 EHDLKLSKGPDEEASKLKFFEYGLKDVKYTYALMRLLLTGVNSQSDDPEDSKNFNTIDDL 183

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              + + E   +   + I   G       +  + +       K+++ I            
Sbjct: 184 QYNVYNNELKAYSAFRYIEMTGTP-----LGDMSKSQDAIDGKIED-IENKWGFRFDWVN 237

Query: 237 QTYALRMYLF--LITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLN 293
            +  +   L           +      K +L  H          +          I   +
Sbjct: 238 SSDKVGALLSLVDKRLKPGDNGKISVTKEVLTKHIQEVGDFAYDVKEVRKLKKL-IQFFD 296

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +    +  DGR+    QF   ++TGR S      Q +P+                     
Sbjct: 297 SW-NKLGHDGRI--FPQFNITTKTGRTSSSNPNLQQVPQDS------------------- 334

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     VR+ I A  G K +  D + +E R  A+ A E   ++A+ NG D++  T+
Sbjct: 335 ---------RVRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMMEAYKNGADLHTKTW 385

Query: 414 AKAFNTPIDKVSKE 427
                 P       
Sbjct: 386 ESMNGRPFSDDHDM 399



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 45/188 (23%), Gaps = 47/188 (25%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   +A+   + G++                                       
Sbjct: 738 MSQEDADEFHRAFFESYPGLVSWHNACKRFLDEHGY------------------------ 773

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             I  P  RR     V          +     + +   +     VQ +  DI    M   
Sbjct: 774 --IQSPLGRRRYLPTV---------YSKDWGEKESAYRRSINTPVQGLGSDICVSAMTTI 822

Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVG--TLCSLMTKNPSWAK-----GLPLKA 665
                    + +  T+HD I+    +     V    +  +M   P   K     GL L A
Sbjct: 823 LQHPEYGKTFFVHGTIHDAILVTAYEDQAEHVAYDIIKKIMEHPPILDKLPTTNGLYLIA 882

Query: 666 EGYEAKRY 673
           +      +
Sbjct: 883 DADVTDSW 890



 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
              ++ +I      +L Y   +K  +  A  + G+D+ Q   +    + FE +    S H
Sbjct: 702 RHNDKVSIQGNCNFSLLYGAQSKTLRDYARTNMGIDMSQEDADEFHRAFFESYPGLVSWH 761

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
              +    E       +G    L     +         W +    +   +     
Sbjct: 762 NACKRFLDEHGYIQSPLGRRRYLPTVYSKD--------WGEKESAYRRSINTPVQ 808


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 8/219 (3%)

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
           M   TL+  ++  +I +  ++L+  RL S  ++  K   L ++VS+DGRLRGT QF GAS
Sbjct: 2   MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGAS 61

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372
           RTGRW+G +FQP NLPR    ++ + + ++AL  G       D + L S  +R CIIA  
Sbjct: 62  RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQ 121

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427
           GKKLV++DL+ IE R+LAW+AGE+WK+ AF+  ++      Y   YA+AFN     V+K 
Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKA 181

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           QR IGKVMEL LGY GG   F T A   GLDL + ++  
Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAA 220


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 103/696 (14%), Positives = 182/696 (26%), Gaps = 164/696 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D+ETR+       G   +   A + L           L          + +   L 
Sbjct: 39  ILGLDVETRALPD---TGPRHFGPDAGLRLVQLGTATVAWVLDPLDPAQR--AAIAAVLG 93

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLALNF 118
           D     V H + F+ +     L I +  +R   T ++++           LK        
Sbjct: 94  DPGRRFVTH-TSFDTLAVWSALAIGL-GQRVADTHLISKLVDPDERAGHGLKTLTARHLD 151

Query: 119 SEHLTKMEEGKALIARFCKGSIDSP--PYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      A +         +         A+     + +  Y +R +    +L   
Sbjct: 152 DGLTLAQTALYARMRALAPPGERAGERWKTWGWAHLPADDEAYVVYVRRLLPVLLDLCGP 211

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
              L   E+ L      I  RG  +DL         +  +       I         S R
Sbjct: 212 FSHLVPVEQWLAAQSVGITIRGLALDLPYTRAYLAQVEADHHAAAALIEAELGCPPTSPR 271

Query: 237 QTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQL-----AKDLILNRLAS 284
                  +L     +            +  TL ++    +  +L      + ++  R   
Sbjct: 272 FA----DWL-DTQHVPGPRTATGRLQVTADTLTALARDLDTGRLTVSDQVRRMLTARGRV 326

Query: 285 SGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           + ++     L +   A    GR+   +    A +TGR S      Q L + +        
Sbjct: 327 AATSNTIANLRSFLAAADPAGRVHPQINTLRA-KTGRMSITGPALQTLKKGDPR------ 379

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R C  A  G  L+  D + +E RV A ++ +       
Sbjct: 380 ---------------------LRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVL 418

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
           A+G DI+  T    F    D  +K+QR +                  T  +  G      
Sbjct: 419 ASGVDIHDATARLLFG---DGFTKDQRTLA--------------KRATFGTIYGGG---- 457

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                                                      V   WRA + GV     
Sbjct: 458 --------------------------ARALMNATGATHQVATDVITRWRAAYPGVAAY-- 489

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                                                    S RR+    ++   +    
Sbjct: 490 ----SARLADHNPVITG------------------------SGRRIPADPLRPYANA--- 518

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-ATKNGYD--IVLTVHDEIVSETPDT 639
                              VQ+ +RD+L   +    T++G    + L VHDE++   P  
Sbjct: 519 ----------------NYAVQSTARDLLVTAVHTLVTRHGLHDALWLFVHDEVIVHVPTD 562

Query: 640 PYFSVGT-LCSLMTKNPSWAKGLPLKAEGYE-AKRY 673
               V   L + MT +     G+ + AE       +
Sbjct: 563 RAAQVAADLQAAMTTSFR---GVAITAEADILGTHW 595


>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
          Length = 2035

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/506 (12%), Positives = 140/506 (27%), Gaps = 94/506 (18%)

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
             E  + ++       G+ +D   +  L E +   R+++  D   L  G       + A+ 
Sbjct: 1601 REMPVHVVLARSEVVGFPVDRTALGALIERLKASRERIATDARLLNGGRKLDFGSSRAVA 1660

Query: 243  MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--S 300
              L L    +        L+ +        LA  +I  R   S  A   +  L   +  S
Sbjct: 1661 AALRLAASRERPRTVRQVLERL-----DNPLAALVIAYRKIDSNLART-IEPLYRTIQLS 1714

Query: 301  SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            ++ R+ G    +  + TGR +      Q + +       L   ++     +         
Sbjct: 1715 AESRVHGRSHCF--TSTGRITMHEPNLQTVVKDFTVPAPLAGGMRERRTTDE------EE 1766

Query: 361  SDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                RS    ++  + L+ AD   +E  +L  ++ +   + A             +    
Sbjct: 1767 HFSCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGSRR---- 1822

Query: 420  PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                    +    +  +L                             + +       +A 
Sbjct: 1823 --KPQDVFRSLAARWHQLG-------------------------DASEVSDELRTRTKAI 1855

Query: 480  SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
             + +         A + ++   +   + + +   +  + +  + +      +        
Sbjct: 1856 VYGVIYGMGARAMAAELQMEEESARSLMEQFHRSYPDIRRYQERVIRLTRQLGY------ 1909

Query: 540  ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                                I   + RR     +    +    A ++  R+         
Sbjct: 1910 --------------------IETLTGRRRYLPAIGQAATADPAARAEAERQA------VC 1943

Query: 600  NIVQAISRDILCEGMKNATKN-----------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
              +Q  + DIL   +    +N              +VL +HDE+V E P      V  + 
Sbjct: 1944 TTIQGSAADILKNAIVRMERNLRKYADVLDVGAIQLVLHLHDELVYELPRAQLPKVAKIL 2003

Query: 649  S-LMTKNPSWAKGLPLKAEGYEAKRY 673
               M         +PL+ +      +
Sbjct: 2004 RSSMENCAK--LSVPLRVKLKAGDSW 2027


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 89/672 (13%), Positives = 163/672 (24%), Gaps = 210/672 (31%)

Query: 114 LALNFSEHLTKMEEGKALIAR-------------------FCKGSIDSPPYDCTRANHVQ 154
             L F E   K  E KA                            + +            
Sbjct: 67  ETLKFKEDTKKYNEEKANNKYSVLVKPVKPKKGKAPTKAELAYEPLANEVDGGNFNYDWI 126

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDL 203
             ++   Y   D +    +   L  +    + +W           +    I   G     
Sbjct: 127 PLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIESNGIYAQT 186

Query: 204 DLVLKLQE--------------------LIAQERKKLDEDIVKLTDGII----------- 232
           D +  + E                     + ++  +L E  V+                 
Sbjct: 187 DYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAIPPAKRDKDIAKLR 246

Query: 233 --------RSSRQTYALRMYLFLITGIDLV-------------------------DMSEG 259
                    +          L+ I GI L                             + 
Sbjct: 247 DKYKKKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKTDKK 306

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTG 318
            L  I+ H    +    L+L               L   + + DGR+ G+    G + T 
Sbjct: 307 ALNYIVDHFPDQKAFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATG-TETT 365

Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLV 377
           R S      Q LP +    +                         ++     A     L+
Sbjct: 366 RLSSNNPNMQQLPAKTSDPK------------------RFDYQYPIKRMFQTAFENGALL 407

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             D + +E R+LA  AG++   +AF +G D++  T +  +  P+DKV  E          
Sbjct: 408 QLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAE---------- 457

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                             F    +A +  +   +    FA K  
Sbjct: 458 ----------------------------------FRKKAKAVNFGIAYGETPFSFAPKHD 483

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     E + + + A    +      + E     +++G   + +    + R    + K+ 
Sbjct: 484 MSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTLQGHRRLIRDAFSKDKQI 540

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            +  L                                 K     +Q          +   
Sbjct: 541 QNGAL--------------------------------RKSVNTKIQGTGAYCTNMSLIYI 568

Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP------SWAKG---L 661
                       +VLTVHD IV + P      +  +C  +M   P       W       
Sbjct: 569 DQYIQDNNMKSKLVLTVHDSIVVDCPPEEVEIMARVCKTIMENLPIDFLSIEWKGEKTKY 628

Query: 662 PLKAEGYEAKRY 673
           P++A+      Y
Sbjct: 629 PIEADIEIGTNY 640


>gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus]
          Length = 299

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 90/316 (28%), Gaps = 43/316 (13%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
             S  +R   +   G  ++ AD + +E R+LA ++ +   I+    G D++ +  A+   
Sbjct: 18  PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 77

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              D V  + R   K +   + Y  GAK          + +++        S    ++  
Sbjct: 78  IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKGI 132

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                       +    + ++G          R    G+                     
Sbjct: 133 NHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAINTTVQ 183

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
            +         V  + + +        R    S    +    N  T  L + +  G    
Sbjct: 184 GSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLKG---- 233

Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657
                          M    + G+ I L +HDE++ E  +     V  +    M      
Sbjct: 234 ---------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMECAIK- 276

Query: 658 AKGLPLKAEGYEAKRY 673
              + LK +      +
Sbjct: 277 -LSVKLKVKVKIGASW 291


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 5/150 (3%)

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                 +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F
Sbjct: 1   NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 60

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
             P+D V+ EQR   K +   L Y               L++ +          FE +  
Sbjct: 61  GLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGLSRQLNIPRKEAQKYMDLYFERYPG 115

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              +    + Q  E    + L G    L  
Sbjct: 116 VLEYMERTRAQAKEQGYVETLEGRRLYLPI 145


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/565 (13%), Positives = 146/565 (25%), Gaps = 170/565 (30%)

Query: 163 CKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             +D+E   EL + L               E         +   G   + + + + +   
Sbjct: 2   LAKDIEVLLELDQVLERKLRNAQLDRAFTLECRALPAMAQMWRVGLPWNREELDQCRIDY 61

Query: 214 AQERKKLDEDIVKLTDGIIR---------------------------------SSRQTYA 240
             + K+L  + ++  D  +                                  + + +  
Sbjct: 62  EDDIKELGNEFIRELDNDLPSGKKLPRNEDGSFNLRAKDQGSKRLGTKKYAGFNIKSSKQ 121

Query: 241 LRMYLFLITGIDLVD--MSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSE 297
           L   L L+ G   V+        K  L +        + L+  +          + ++ +
Sbjct: 122 LLEKLELVLGYTPVNNDGKPSVAKDALKNCAADSPTIQTLMTWKRREKRRQ--MIESIQD 179

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            +S+DG +R +    GA  TGR S      Q +PR                         
Sbjct: 180 KMSNDGFVRASYMQLGAD-TGRMSSIKPNNQQIPRDS----------------------- 215

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  R C+ A  G K+V AD + +E R+ A +A +     AF  GED++  T  +  
Sbjct: 216 -----EFRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGEDLHDYTAEQM- 269

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                      R I K     L Y  GA+  +  A   G+                    
Sbjct: 270 --------GCDRQIAKSANFGLLYGAGAEGLRKYAGSSGV-------------------- 301

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                               +       ++  W   + G+    +++    +   +    
Sbjct: 302 -------------------IMTNDEAVKIRDNWLTTYSGIRDWQREM-NYLSRSTEGDEW 341

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
              R   +  R  ++       +                                     
Sbjct: 342 PETRVPVSNMRRFLKGDLNRTTVR------------------------------------ 365

Query: 598 TENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDT-PYFSVGTLCS 649
               +Q     IL   + N              I   VHDE++    +         L +
Sbjct: 366 CNTPIQGAGAAILKCALGNLWDKVKETGEDKVRIAAAVHDELILLVKEDLADDWAEILKT 425

Query: 650 LMTKNP-SWAKGLPLKAEGYEAKRY 673
            M      W   +P  AE     R+
Sbjct: 426 TMENAEAKWLDDVPALAEVSIGDRW 450


>gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
 gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
          Length = 519

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/538 (12%), Positives = 133/538 (24%), Gaps = 155/538 (28%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKL----DEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   G   D   +    E I +  K++      +  KL      +      +  +     
Sbjct: 1   MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60

Query: 250 -GIDLVDMSEGTL--KSILSHSNITQLAKDLIL---NRLASSGSAILKLNTLSEAVSSDG 303
               +   ++ TL  + +   +   +   D I    N    +      +  + ++  ++ 
Sbjct: 61  ENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNN 120

Query: 304 ---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
              +        G + TGR S      Q+LPR       L       +      +     
Sbjct: 121 LKFQFSCLWNQTG-TTTGRLSSTKPNFQSLPRNSTKLTKLNNIDFDDDDNFNNINNNNNN 179

Query: 361 SDCVRSC-------------------------------------IIASNGKKLVVADLAG 383
           ++  ++                                       I+  G  LV  D   
Sbjct: 180 NNGEKNLYTLLNNDNDGDDDEDDDNIDELNSYNNNNNIINIRNSFISREGYSLVALDYNQ 239

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAK-AFNTPIDKVSKEQRAIGKVMELALGYQ 442
           IE R++A  + +   I+ F +G+D+     ++       + V KE R   K +   + Y 
Sbjct: 240 IELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVKKEIRDKVKRIVYGILYG 299

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
                   +                                              +    
Sbjct: 300 IQKNSLHKL--------------------------------------------LGVSLDE 315

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
            +     +  K + V    K         ++ G  ++                       
Sbjct: 316 AQEHINNFNLKFEEVSSFIK-----INSQIKNGKILTIGNRI------------------ 352

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              RR          +  +++ S    +         +I+Q  S DI+   M N      
Sbjct: 353 ---RRFQDHSSIIPSTSSSSSLSSSPIQAI------NSIMQGSSADIIKMAMINIMNELL 403

Query: 623 ----------------------DIVLTVHDEIVSETPD----TPYFSVGTLCS-LMTK 653
                                   VL VHDE+V E PD         +  L    M +
Sbjct: 404 LPLSKLREFIGVNSKGDVVGTPRFVLQVHDELVFEIPDQLLSDESIRLDLLIKYQMER 461


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 109/717 (15%), Positives = 179/717 (24%), Gaps = 217/717 (30%)

Query: 6    IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            +D+ET S   L      A   +  I L     +               PS L+ +L    
Sbjct: 1146 LDLETCSATQLWAP---AVPGRPFIRLVG--TEAG---------IDTDPSSLVPWLASGG 1191

Query: 66   VMCVAHNSL-FERILFKKTLGIDI----PSKRWICTSVLARTNGLP-------------- 106
             + +AHN   F+ +   +  G+D+       + I T VLA     P              
Sbjct: 1192 RL-IAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPPVDGKLSGGQIA 1250

Query: 107  --SSLKNACLALNFSEHLTKMEEGKALIARFCK--------GSIDSPPYDCTRANHVQAW 156
               SL              K  + K L     K          +++  Y     NH    
Sbjct: 1251 RLYSLDRCAERAGV---PGKTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLIPRNHPD-- 1305

Query: 157  QLFGEYCKRDVEATRELFK------RLIPLSDGERDLW-LLDQTINDRGYRIDLDLVLKL 209
              +  Y + DV A R ++       +L P +  E  +   L   I   G R+DL L    
Sbjct: 1306 --YLAYLQGDVAACRAVYDALVPDGQLSPYARREMRVMGRLVTGITLHGTRLDLQLTQSR 1363

Query: 210  QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI--------------TGID--- 252
             + I   +++    +V         +    A    L                   +    
Sbjct: 1364 YDAIEARKEECRSRLVADYGLPTM-TSSGAAAANPLSCKGAAEAITKAAADVGLVLPLTA 1422

Query: 253  --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGT 308
                  S+  L  +L             L     S +    +    L +   SDGR+   
Sbjct: 1423 TGKPSTSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTAL-DHCQSDGRIHPQ 1481

Query: 309  LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +    AS  GR+S          ++                               R+  
Sbjct: 1482 VAPLQAS--GRFSLTNPGITVFGKRGGRVTE-------------------------RAIF 1514

Query: 369  IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            +   +  +L+ ADL+ I+ R +A  A +   ++ F  G D +    A             
Sbjct: 1515 LPDADDHRLLAADLSQIDMRAMAAHAQDPAYLELFQPGRDAHSEIAAAV---------GL 1565

Query: 428  QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
             R+  K +     Y               L                              
Sbjct: 1566 SRSDAKAIGHGWNYGMSVNGMVRHGISQAL------------------------------ 1595

Query: 488  QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                            E   +  R     ++     + E  A                  
Sbjct: 1596 ---------------AEQFDQGMRRSFPQLVAWRDQIRERAA------------------ 1622

Query: 548  RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                            S + L       D  +         R  T G  L     Q  +R
Sbjct: 1623 ----------------SGQLL-------DNGFGRMMRPNPARAHTQGPALMG---QGTAR 1656

Query: 608  DILCEGMKNATKNGYDIVLT----VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAK 659
            D++   M    +    +V      VHDE+V   P          +   M     WA 
Sbjct: 1657 DLM---MLALLRLPLWLVPQLRFLVHDELVFSVPVARLDEAGEQILQAM--TFDWAP 1708


>gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
 gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
          Length = 1459

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 84/722 (11%), Positives = 156/722 (21%), Gaps = 238/722 (32%)

Query: 51   SAMPSDLLQYLRDETVMCVAH----NSL-----FERILFKKTLGIDIPSKRWICTSVLAR 101
                + +   ++DE+++ V +    +       ++ I  +                + A 
Sbjct: 771  EEKLNFMKNIIQDESIVKVVYFCQESIKPFIKYYDWINLRNCW----------DPMIGAW 820

Query: 102  TNGLPS------SLKNACLALNFS---------------------------------EHL 122
                        S+++    L                                       
Sbjct: 821  LLESDLLSTKKVSIESLAHFLKLKSLNNNNNNNNNNNNNNNNNNNNNNNQNNNNLIFTEK 880

Query: 123  TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                  K     + K    S  Y+    +H   W +   Y    +         L     
Sbjct: 881  ELNYILKRESLLYDKDKDTSSNYNNYLYDH---WLVLKVYNVISISLF---EFDLNFSFS 934

Query: 183  GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG----------II 232
             E  L  +   +   G   ++  +    + I++  K+L E + K                
Sbjct: 935  NEMRLIPILSKMELEGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEE 994

Query: 233  RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNRLASSGSAI 289
                    +  +L    G+D+   S+ TL      +   Q     I   L     S    
Sbjct: 995  FKLGSFKEVSGWLNQH-GVDIKSTSKETLIQQKRLNINNQKVVTFIDRVLFYRRLSALKG 1053

Query: 290  LKLNTLS-------------EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
              +                    +S  ++       G + TGR S      Q +PR   S
Sbjct: 1054 HYIEPYLLKYTNTTTTTKTRSNTNSTFQISCQWNQTG-TATGRLSSSEPNLQTIPRTSTS 1112

Query: 337  EE-------------------------------------------ILTQTIQALNRGETI 353
                                                          L       N     
Sbjct: 1113 LINPTTATTTTTTTSTNNDLNDLDDLDDLDYNGNDGGSLDPDFIQALQDDDDNNNINNNN 1172

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             +        +R+  I+  G  LVV D   +E R++A  + +   I+ F +G D+     
Sbjct: 1173 NNDDDDNIINIRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMA 1232

Query: 414  AKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             +  +    D  + ++    +V                     G+               
Sbjct: 1233 VRLSDRDDLDVNNVDKETRDRV------------KRIVYGILYGI--------------- 1265

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                           Q         +         K +  K  GV    +          
Sbjct: 1266 ---------------QAFSLGKLLNIPIYKASDHIKNFYFKFDGVSNFIQITKSNAEKSH 1310

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                     R  +                                               
Sbjct: 1311 VVPTLGKRIRKLDSKFKT------------------------------------------ 1328

Query: 593  YGGKLTENIVQAISRDILCEGMKNATKNGY---------------DIVLTVHDEIVSETP 637
               K   +I+Q  S DI+   M       +                 +L VHDE+V E P
Sbjct: 1329 ---KAVNSIIQGSSADIIKLAMITIMNELFLPLLNLNSNNNNKIPRFLLQVHDELVFEVP 1385

Query: 638  DT 639
            D 
Sbjct: 1386 DE 1387


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 94/371 (25%), Gaps = 102/371 (27%)

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            L       G + TGR S      QNLPR           I A   G    +        
Sbjct: 631 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GITAAVAGNDAEEDGEEDLLG 680

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R C +A++G  L+  D   IE RVLA + G+   ++A     DI+       F      
Sbjct: 681 FRRCFVATDGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KP 738

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           VS E+R + K +   L                                            
Sbjct: 739 VSTEERRLAKRVVFGLL------------------------------------------- 755

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                    A    +       +         G+    + + E                 
Sbjct: 756 -YGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEARTNG----------- 803

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
                           +   S R     D++       +   +             ++VQ
Sbjct: 804 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 839

Query: 604 AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654
             + D++   M            ++   ++  +HDE+V          V  L  S M+  
Sbjct: 840 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 899

Query: 655 PSWAKGLPLKA 665
                 +PL  
Sbjct: 900 MQLL--VPLSV 908


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 190/701 (27%), Gaps = 186/701 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTE-QSAMPSDLLQ 59
            +  DIET         G+        I    +AW  DD  +         + +      
Sbjct: 36  TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGI-----DIPSKRWICTSVLARTNGL----PSSLK 110
            L +     + HN+ F+     +  G+     +I   + + T +LAR +        SL 
Sbjct: 85  DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143

Query: 111 NAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                 L  S+    M+      G   I    +G     P     A       L  E   
Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203

Query: 165 RDVEATRELFKRLIPL---SDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213
           R +     L          +D E +  L DQ I  R        G  +D + + + QE  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHS 268
             ER + +  +     G+   + +   +  YL  I  +               K +L   
Sbjct: 264 DAERIQHEALLAAH--GLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           +         L  +      + K+       +  GR    +   GAS TGR +  + + Q
Sbjct: 322 DHPLTIAQRKLAEVDKVLGYLTKVE---RQAAVTGRCHPQVGVLGASATGRMAYSMPELQ 378

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
             P+  R                                II  +G+ L   D + IE   
Sbjct: 379 QFPKDARP-------------------------------IITDDGQGLTSIDWSQIEPVT 407

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A +AG+   +  F  GED+Y     ++   P+ K                         
Sbjct: 408 MANMAGDVGFLIPFEAGEDLYE-PIQRSCGLPMTKE-----------------GRDIAKV 449

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             +A+  G+ +   +  +K                                  + + +++
Sbjct: 450 VLLATMYGMGVNGLALKIKH------------------------------TVESAQQIRR 479

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
              A      +    +                                   I+  + R L
Sbjct: 480 QMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGRIL 513

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
              D                             VQ  + D+L   +    + G    L +
Sbjct: 514 PVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMEEAGLGDHLQL 554

Query: 629 --HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663
             HDE++ +T          +  +M   P     WA  +P+
Sbjct: 555 AMHDELIVDT-----EVADDVQQIMLTPPDFLIRWAGRVPV 590


>gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
          Length = 763

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 88/783 (11%), Positives = 193/783 (24%), Gaps = 182/783 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY------AWDDEPVKLWDRTEQSAMPS 55
               +D ET         G+    ++  + +  +        D+   +++    ++ +  
Sbjct: 36  KLCVLDSETT--------GLHIIKDKPFMWVFGWMLPKEKRTDEIKGRVFAFDSKAEILL 87

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----KRWICTS---------VLART 102
            ++  L  + VM V HN  ++  +     GI        K    T          V AR 
Sbjct: 88  QVI-ALTKKCVMTVGHNVKYDLHMLIN-GGISEKVVYGLKNITDTMGLCRFSFDAVSARD 145

Query: 103 NGLPSSLKNACLAL-------------------------------------NFSEHLTKM 125
            G    LK                                              +     
Sbjct: 146 GGDVLGLKKVSEKYIDPKAGEFEKEVKKELRKINDAKRNILKELLKPYKGWGLGKIKEAY 205

Query: 126 EEGK-ALIARFCKGSIDSPPYDCTR----ANHVQAWQLFGEYCKRDVEATRE-------- 172
           +  K   +  F K                         F +Y + D +   E        
Sbjct: 206 KVKKRNEMDYFTKEKKQRWLKVPEEIENVYFKWMEENPFADYSEVDRDIMMEYVHSDGIY 265

Query: 173 ------------LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
                       L ++   + + E  L +    +   G ++D+  +    +    E +KL
Sbjct: 266 TLELVEFTYSTVLKRKQKAILEQENKLIIELLKMERVGMKVDMPYLHSCFKKCEDEIQKL 325

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            E++     G   +  Q   +  Y     G       +  LK      +       LI  
Sbjct: 326 YEELW-GIVGEYFTVSQGTVIADYFEKKLGERPETTDKSFLKK-----HKDDRVSQLITR 379

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
                      ++ + E    D         +  + +GR        Q  P++    E  
Sbjct: 380 LRRLEKWQSTYISRIIEVAQYDNHFYTQYGQFN-TVSGRLGSDA---QQFPKERILTEEG 435

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIA----- 393
               +    G+   +    +    R   I   G   K+   DL+ IE R  A        
Sbjct: 436 ELYEKENGEGKAPIEYEIFSP---RRAFIVEGGNYNKIAYFDLSQIELRAQANYTVLLKK 492

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK-EQRAIGKVMELALGYQGGAK------ 446
            +    +A+   +  +  T  +      ++ ++  ++         L             
Sbjct: 493 PDLNLCRAYMPFKCTHYITGEEFRYDTKEERARWYEKKEDGTSVWLLENGESWTPTDVHS 552

Query: 447 ----------VFKTMASHCGLD-LQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFAV 494
                      FK +  +   +  ++   + KS   F  +  +  +          + + 
Sbjct: 553 ETSHNTLMALAFKCVDKYKQYEHEKESPVDEKSFKKFWRYIGKMFNFMRNYGGGAKKASE 612

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
             ++       +   W      V    K +    A V +   + +            +  
Sbjct: 613 ALEVSMEIANALVSGWSNTFPEVSYYQKQV---AAKVQKNSYATNMYGRVYFLSNTDK-- 667

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
                                                    K+   +VQ    D+L   +
Sbjct: 668 ---------------------------------------AYKVGNYLVQGSCADMLKGYV 688

Query: 615 KNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668
                   +N      +  +HDE+         +    +  +M     W + +P+  +  
Sbjct: 689 IRIGEFLRENNCKTLPLANIHDELQFLVHKGEEWIFPHIKRIMED-VEWMQ-VPVVVDLE 746

Query: 669 EAK 671
             +
Sbjct: 747 ITE 749


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 101/388 (26%), Gaps = 108/388 (27%)

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
            +  ++ + +    +    L       G + TGR S      QNLPR   +          
Sbjct: 953  AYTMQADEVILPATGYATLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITSTEEEGEEDL 1011

Query: 347  LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
            L                 R C +A+ G  L+  D   IE RVLA + G+   +KA  +  
Sbjct: 1012 LG---------------FRRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKALTSSA 1056

Query: 407  DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
            DI+ T     F      VS E+R++ K +   + Y  G                      
Sbjct: 1057 DIHQTIAEVVFKK--KPVSTEERSLAKRVVFGVLYGAGP--------------------- 1093

Query: 467  KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                      A    +       +         G+    + +  
Sbjct: 1094 -----------------------KTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVIA 1130

Query: 527  GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                                             +   S R     D+        +   +
Sbjct: 1131 ETRANG--------------------------FVRTLSGRLRYLPDICSTVLSRRSYAER 1164

Query: 587  LMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPD 638
                         ++VQ  + D++   M            ++   ++  +HDE+V     
Sbjct: 1165 Q---------AFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRK 1215

Query: 639  TPYFS-VGTLCSLMTKNPSWAKGLPLKA 665
                + V  L S M+        +PL  
Sbjct: 1216 EHLRTVVPLLSSAMSHAMQLL--VPLSV 1241


>gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 132

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/131 (46%), Positives = 77/131 (58%), Gaps = 6/131 (4%)

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQA 604
           M+  +  + + LPS R L Y+  +    G  SY+ T   T +  R  TYGGKL ENI QA
Sbjct: 1   MQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 60

Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLK 664
           +SRD+L   M      GY IVLTVHDEI++E  D   F+   L +LM   P WA+GLPL 
Sbjct: 61  VSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLA 120

Query: 665 AEGYEAKRYRK 675
           AEG+E  RYRK
Sbjct: 121 AEGFETHRYRK 131


>gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
 gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
          Length = 690

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 92/321 (28%), Gaps = 32/321 (9%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           ++ ++L D        +    R +     LG+ +P   +    + +       +  +   
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIAF-DVLLASYLINPDENSNDLGK 418

Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                   +      +   GK    +  +  +    +            LF        +
Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
             ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E I    
Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEA 528

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285
                +      L   LF    + ++  ++    T   +L+           IL+    +
Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                 +  L +A   D ++         ++TGR S      QN+P +        +   
Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPAR-------DEGKI 639

Query: 346 ALNRGETIADPLGLASDCVRS 366
                  +       +  +R 
Sbjct: 640 IRKPLSLLIRIGRFLARNIRK 660


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 77/663 (11%), Positives = 146/663 (22%), Gaps = 178/663 (26%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--A 100
            + D T+    P  L   L   T   +AH++  E       LG+    +    T +   A
Sbjct: 109 YVIDLTKFKE-PKLLQPLLDLPTTY-IAHHAKAELHCL-WQLGLT-EPRTIWDTCIAERA 164

Query: 101 RTNGLP----------------------------SSLKNACLAL--NFSEHLTKMEEGKA 130
           R  GL                              +L         +   +L K +   +
Sbjct: 165 RYLGLHVFDNDRVFDSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHS 224

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            I            +         A      Y  +  + T  L      L   E      
Sbjct: 225 FIDYDSGEFTREQIH----YAAEDAIVAAKLYLPQMQQLT--LQGCYHHLITVEMPWVTT 278

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
           +  +   G  +D +    +      + + L   + ++    + +         +   +  
Sbjct: 279 NAAMEWHGVSVDREKCNAVLNASTPKLETLRSQLAQMG---LDNPNSHQQKETFFRQLNL 335

Query: 251 IDL--VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
           +D             +L        A  L+             L      + SD R+   
Sbjct: 336 LDHFNKGGKYSFKLQLLKDLAHIHPAIGLLAEFSKVQAIERDILLR-PTIIGSDSRVHPE 394

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            +      TGR S        LP                                +R  I
Sbjct: 395 HKQLEV-VTGRQSCASPNLLGLP------------------------------GAMRPLI 423

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----------GEDIYVTTYAKAF 417
           I   G  +  AD + IE  + A +  +   I  F                       +  
Sbjct: 424 IPKKGNGIGEADYSQIEVAITAAVYSDKNLIAKFNAGDIYTVMAQEFYAIDLDEEDRQCD 483

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
           +       K++R I K   L + Y                                    
Sbjct: 484 SDTFKHKHKDKRDIMKTCVLGILYGLSPFGL----------------------------- 514

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
                            + ++     + +   + A    +  + +   +  A       S
Sbjct: 515 ---------------GSRLEISELEAKQLMNRFLAMFPTLKHMMETAPQQAAYRGYVSTS 559

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
               R  +    + R     +                                       
Sbjct: 560 TGLHRHRSNNGALSRHETNWM--------------------------------------- 580

Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652
                Q  +  +         +        +VL +HD  + E P      VGTL  ++M 
Sbjct: 581 VNMPAQGTAAALFKLAGNRLYQLYKPYNAKLVLAMHDAFIFEAPLDHMEEVGTLTTNVMI 640

Query: 653 KNP 655
           +  
Sbjct: 641 QAV 643


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/473 (15%), Positives = 137/473 (28%), Gaps = 78/473 (16%)

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE---- 184
           K L     +                   ++   Y   D   TR +F       + +    
Sbjct: 417 KVLKKLPPEILDIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQYRKMEEDYTQI 476

Query: 185 --------------------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                                 L      +  +G RID + +      +  +  +L + I
Sbjct: 477 KRLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDFIARVDAKIPELKDRI 536

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK---SILSHSNITQLAKDL 277
                  I  S  +  L+  LF     + V  ++     T K    +L   N  +  +DL
Sbjct: 537 FSSIGRKINLSSSSGDLKRVLFKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNEDEFIRDL 596

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           ++ R          +N     +  DGRL  +L  +G + T R S      QN P      
Sbjct: 597 LILRRVEKVRETYFIN-WRGEIEYDGRLHFSLNQHG-TATYRLSANK-GLQNAP------ 647

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396
                              L      V+S  +       +   D+A  E RVL   + ++
Sbjct: 648 -----------------AYLKEIDLNVKSLFLPDSEEYDIFDLDIANAELRVLCGYSKDE 690

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK----------VSKEQRAIGKVMELALGYQGGAK 446
             I+AF  G DI+  T AK  +   ++             + R +GK +     Y  GA 
Sbjct: 691 TLIEAFNQGLDIHSLTAAKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGTVYSMGAT 750

Query: 447 VF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
              K + +   + + +          FE++ + + +    +             G     
Sbjct: 751 SLSKQLWAESRIKVSEDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHRFVYTYTGR---- 806

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                R +   +        + F   +      ++  + N   + +    + +
Sbjct: 807 -----RRRFPMLGVDNHQKFKAFRQAINCRIQTTSADIVNTNLVDLDDAIKPL 854



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 88/745 (11%), Positives = 180/745 (24%), Gaps = 127/745 (17%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE-------Q 50
           M KL  +D ET S +P        Y  +  +   + +W         +D  E       Q
Sbjct: 203 MKKLVSVDTETTSLEP--------YRLEEKMIAISLSWKKGQGLAFYFDHHEHGLNKEKQ 254

Query: 51  SAMPSDLLQYLRDETVMCV-AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG----L 105
             + S L + L D       A N+ F+        G+DIP   +    +L          
Sbjct: 255 DQVLSKLEEVL-DPEYTVTCAANAKFDYKWLNYRYGLDIPFFDF-DVMLLEHLLDEDKKN 312

Query: 106 PSSLKNACLALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              LKN              E  KAL     +F K + +               +   + 
Sbjct: 313 EYGLKNLTRDYIPELAGYDEELEKALADIQNKFDKEAKEKHEQALQDYFTKWQEKTDEQR 372

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   +  R+ +  L  +   E+    +    N R   +       L +++ +   ++  
Sbjct: 373 KELLKDWVRQRYIDLPEIEGLEK----IKTVQNGRKKAVSKAYTKSLFKVLKKLPPEIL- 427

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282
                    I  S         L     +    M     + I +        + +  +  
Sbjct: 428 --------DIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQ-----YRKMEEDYT 474

Query: 283 ASSGS----AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                        L      ++     + +   Y   R  R     F    + R +    
Sbjct: 475 QIKRLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDF----IARVDAKIP 530

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW- 397
            L    +  +      +    + D  R                  ++       + +   
Sbjct: 531 ELKD--RIFSSIGRKINLSSSSGDLKRVLFKEKR--------YEPVKYTKTGDFSTDKNS 580

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG-----------YQGGAK 446
               +   ED ++            + +      G++                 Y+  A 
Sbjct: 581 MEVLYEKNEDEFIRDLLILRRVEKVRETYFINWRGEIEYDGRLHFSLNQHGTATYRLSAN 640

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                A     ++    +++    + E                  ++  + LI    + +
Sbjct: 641 KGLQNAPAYLKEIDLNVKSLFLPDSEEYDIFDLDIANAELRVLCGYSKDETLIEAFNQGL 700

Query: 507 KKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                     +     +  +        E   +           V       +   L + 
Sbjct: 701 DIHSLTA-AKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGTVYSMGATSLSKQLWAE 759

Query: 566 RRLV----------------YSDVKGDCSYLNTATSQLMRERTYGGK------------- 596
            R+                 Y  VK                 TY G+             
Sbjct: 760 SRIKVSEDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHRFVYTYTGRRRRFPMLGVDNHQ 819

Query: 597 -------LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645
                       +Q  S DI+   + +        G  ++LTVHD I+ + P        
Sbjct: 820 KFKAFRQAINCRIQTTSADIVNTNLVDLDDAIKPLGGRVLLTVHDSILFQLPKDTAGVTE 879

Query: 646 TLCSLMTK---------NPSWAKGL 661
            L  ++T+            W   +
Sbjct: 880 LLDQVITENTKNKFPWLPVEWKYDV 904


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 116/439 (26%), Gaps = 72/439 (16%)

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T VL+R        ++A     +    TK+    +L A   +       Y  T     +
Sbjct: 1   DTLVLSRLVYPNRRERDA--IHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEK 58

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLK 208
             +   EYC +DVE T +L+  L P          E++L ++       G   D+D    
Sbjct: 59  LSEAMVEYCIQDVELTHKLYGILKPKLQSRKALSLEQELTVICNRQERHGIPFDVDRAQL 118

Query: 209 LQELIAQERKKLDEDIVKLTDGII--------------------RSSRQTYALRMYLFLI 248
               +   R +L  +++                            + R    +   L   
Sbjct: 119 FYSDLCGRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHIAKRLKDF 178

Query: 249 TGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI--LKLNTLSEAVSSD 302
                            +S+LS       AK L    L +   +    +     +    +
Sbjct: 179 YNWKPTEFTPSGEPKVDESVLSKLEYP-EAKLLTEYLLVNKRISQLAEEDQAWLKL-ERN 236

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR+ G +   G S T R S        +P                               
Sbjct: 237 GRIHGRVNTMG-SVTSRCSHSHPNLAQIP-----------------------SVSAPYGK 272

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A  G + +  D++G+E R LA        +  F NG+               +
Sbjct: 273 ECRELFCAPEGFRFLGVDISGLELRCLAHY------MALFDNGDYGKKLLEDDIHTVNQN 326

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K    A  Y  G +   +      +      +  K    F     A    
Sbjct: 327 AAGLSTRNQAKTFIYAFLYGAGDEKIGS------IVGGSSEEGAKLKKRFLSQIPALEKL 380

Query: 483 LWMQDQYPEFAVKDKLIGT 501
                +  +      L G 
Sbjct: 381 RNAVKKKAQKGYLKGLDGR 399


>gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 656

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/712 (13%), Positives = 169/712 (23%), Gaps = 157/712 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  DIET                            DE      R +   +P  + +    
Sbjct: 2   LIFDIETDGLLDATTKVHCLTIYDTET--------DESRLYSSRGDYPQIPVGVERLAAA 53

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH- 121
           + V    HN   F+     K      P    + T  ++R      +L +    L+F+E  
Sbjct: 54  DCV--CGHNVLAFDIPALTKVYPSFAPKGEVVDTLTISRLIWT--NLAD----LDFTEIR 105

Query: 122 ------------LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                         K+    +L A   +  +    +  T  +  +  +    Y ++DV  
Sbjct: 106 RAKTPAQPMFFFPKKLVGSHSLKAWGYRLGVLKGEFGET-TDWQEWSEEMCAYNRQDVVV 164

Query: 170 TRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           TR L++R+          D E     +       G+  + +  +     +A+ R++L ++
Sbjct: 165 TRALWERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQEKAVLYYSQLAKRREELTQE 224

Query: 224 IVKLTDGII-----------------------------RSSRQTYALRMYLFLITGIDL- 253
           + ++                                   +      +   L    G +  
Sbjct: 225 LQRIFPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFNPGSRKDIAERLRETRGWEPQ 284

Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGT 308
                 +    + +LS  +    AK L    L            N   + V  DGR+ G 
Sbjct: 285 EYTERGTPKVDEEVLSALDWP-EAKALSEYFLVQKRIGQLAEGNNAWLKLVGRDGRIHGH 343

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           +   GA  TGR +        +P                                 RS  
Sbjct: 344 VITNGA-VTGRCTHVSPNMAQVP-----------------------AVGVPWGAEFRSLF 379

Query: 369 IASNGKKLVVADLAGIEARVLAWIA------GEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            A  G  ++ AD +G+E R LA             KI                A     D
Sbjct: 380 YAPPGWSVLGADASGLELRCLAHFMARYDGGAYARKILEGDIHWANAQALGLVAEGEKKD 439

Query: 423 KVSKEQRA----IGKVMELALGYQGGA---KVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +         + K    AL Y  G         +       L   +   K   T    
Sbjct: 440 PENPYHMWARNKVAKRFIYALNYGAGDHKLGELVELTDDQAKALLAAAPKSKIDQTSARL 499

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
            +   +         + A   K            +      +  L +D+           
Sbjct: 500 AKQFQYKTITF---KDIAQSLKGAELRA-----TFMKNLPALASLIEDVKRVAKKRGYLI 551

Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
           G    R                                 G  +             T G 
Sbjct: 552 GLDKRRLNVRSIHSAFN----------------TLLQSAGAIAVKKATCVLWDDLTTAGL 595

Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647
                       D          +     V  VHDE      +     VG +
Sbjct: 596 -----------AD-------KVQQ-----VAHVHDEYQLLVKEGEEEHVGQI 624


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +R   IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  
Sbjct: 1   EGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGL 60

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
           P+D V+ EQR   K +   L Y               L++ +          FE +    
Sbjct: 61  PLDSVTGEQRRSAKAINFGLIYGMS-----AFGLSRQLNIPRKEAQKYMDLYFERYPGVL 115

Query: 480 SHHLWMQDQYPEFAVKDKLIGTA 502
            +    + Q  E    + L G  
Sbjct: 116 EYMERTRAQAKEQGYVETLEGRR 138


>gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
          Length = 683

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 103/776 (13%), Positives = 180/776 (23%), Gaps = 198/776 (25%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDD-EPVKLWD---RTEQSAMP 54
           M++ L  DIET               E   +   A    D  E     D      Q  + 
Sbjct: 1   MNERLCYDIETDGL----------IEEVTKLHCIAIINVDTLEEALYADSLVMMTQGTIK 50

Query: 55  SDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART----------- 102
             L +   ++  + + HN   ++  +  K  G ++P  +   T V +R            
Sbjct: 51  DGLDRL--NKASLTLGHNIIKYDHPVINKLTGYELPKDKSFDTLVASRLVFSNIKDIDQG 108

Query: 103 ---------NGLPSSLKNACLALNFSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRAN 151
                         SL+   + L   +   +       A               D     
Sbjct: 109 NSGKYTLGKLFGSHSLEAWGIRLG-GQQKMEYAPVIDPAQPVYDPTVKPKDAKKDPRWK- 166

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRID 202
                 + G+YC +DV    ELF+RL               E +   +       G++ D
Sbjct: 167 GSIFTPMMGDYCMQDVRVNVELFRRLERKIHQLGYARSMLLEHEAAWVLAQQERNGFKFD 226

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII------------------------------ 232
            +  +KL   +A  R+ L   +++   G                                
Sbjct: 227 EEKAIKLLGRLAGRREYLYNKLIETFGGWWVSDGVSVPARTINYKDPTKPSRVQGAPFTK 286

Query: 233 -----RSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                 +      +   L                   +SIL   +    A+ +    L  
Sbjct: 287 VKWVDFNPSSRRHIIKVLTDRGWTPQEFTPSGEAKVDESILKELDFP-EARLMAEWFLVQ 345

Query: 285 SGS--AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                           V  DG +RG++   GA  TGR +        +P           
Sbjct: 346 KRLGQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCSA------- 397

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV---LAWIAGEDWKI 399
                                 R      +G  L+ +D +G+E R          +   I
Sbjct: 398 ----------------EYGAECRELFTVPDGWYLLGSDASGLELRCLANFMARYDDGKYI 441

Query: 400 KAFAN------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
               N                     P + + +E R   K    A  Y  GA+       
Sbjct: 442 DVVLNGDIHWSNAQAAGFIPKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE------L 495

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                     + +   +               +    E            E V+K +   
Sbjct: 496 TGQQVGWTEEEYLNWKAKGAHKPIINRFKRQGKPWTREKI----CNILKGEEVQKNFMKG 551

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +  L  +  E                                 I     RR+     
Sbjct: 552 LPALKNLIDECKELHKEQGY--------------------------IEGIDGRRIYTRSA 585

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD------ 623
                                      ++Q     +    +    K     G        
Sbjct: 586 HAS---------------------LNTLLQGAGALVCKAWIVEIEKLAIAEGLKHGIDGD 624

Query: 624 -I-VLTVHDEIVSETPDTP-YFSVGTLCSL-MTKNPSWAKGL-PLKAEGYEAKRYR 674
            +    VHDE+            +G LC + MT        +  L A+    K ++
Sbjct: 625 FMYCAWVHDEVQIACRTKEIAERIGQLCQVAMTNVEKEFNFVCRLDADFDIGKSWK 680


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 50/209 (23%), Gaps = 59/209 (28%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51
           +  D ET S            A QA +   + A  D                   ++   
Sbjct: 256 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYVPLAHKNGVG 305

Query: 52  ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                               L   L D  V+ VA N  ++ +L K+     I +K +  T
Sbjct: 306 DLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRY---GIETKSFDDT 362

Query: 97  SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            +++           +       L  +    K   G                        
Sbjct: 363 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 407

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           +        Y   D + T  L+  L P  
Sbjct: 408 LVDIDRATHYAAEDADVTLRLWLVLKPRL 436


>gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1]
 gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1]
          Length = 876

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 87/591 (14%), Positives = 160/591 (27%), Gaps = 131/591 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61
           L  DIE  S        +  Y   A I    + WD  +      D T+  A    L Q L
Sbjct: 182 LTCDIEGFS--------LKHY--DAGIGTITFCWDQHNGIAFEVDNTQTKAEDHVLRQAL 231

Query: 62  -------RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101
                  R      + HN  ++  +    L             G+D+  + W CT ++  
Sbjct: 232 KTFFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQLITY 291

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLF- 159
                     A   L       +     A+   +       +   +    + +  W ++ 
Sbjct: 292 LATNS----CAGNELGLKAQAQEFAGNYAVEDIQDITQIELAKLLEYNLVDGLSTWYVYN 347

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE--- 216
             Y     +   E++  L   +  +         +   G  +++D V+KL   +  E   
Sbjct: 348 KHYQTMINDQQYEIYTGLFKDAVKD------IIQMQLTGLPVNMDKVIKLNNQLGAESEH 401

Query: 217 --------------RKKLDEDIVKLTDGII-------------------RSSRQTYALRM 243
                           +L+ED +K  +  +                    +      L+ 
Sbjct: 402 NVWKMMQTKIVQGFVYQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAFNPGSAPQLQR 461

Query: 244 YLF--LITGIDL--------VDMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILK 291
            L+     G+ +              TL+ +L+   S  T+   +++L   AS+      
Sbjct: 462 LLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTF 521

Query: 292 LNTLSEAV-SSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
           L    +A    DG       F  G + +GR S      QN+P                  
Sbjct: 522 LPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP------------------ 563

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                      +  ++ C  A  G   V  D   +E R+ A    +  K+K + +G D +
Sbjct: 564 SSAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGH 623

Query: 410 VTTYAKAFNTPIDKVSK--------------EQRAIGKVMELALGYQGGAKVFKTMASHC 455
                  F   +  +                  R   K    AL YQG            
Sbjct: 624 SLRAYGYFGDQMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNC--- 680

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                +           + ++ +        +Q           G      
Sbjct: 681 --GFSKEKAQDIENKYKKMYKVSIEFVEKKLEQATRDGYITVAFGLRVRTP 729


>gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris
            gallopavo]
          Length = 1077

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/575 (11%), Positives = 143/575 (24%), Gaps = 128/575 (22%)

Query: 133  ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
                +    +   +       +    F      +++ T  L+ +L  +       + L  
Sbjct: 588  KLEQQSEAKASGLEDENFTTSEFRSHFDRLQSLNLKITTSLYGKLGNIF-----TFCLII 642

Query: 193  TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM-YLFLI-TG 250
             +      I   +        AQ      + I        ++++     +   L    TG
Sbjct: 643  KMEHYTSYIGCGISEVPLSDAAQRIMSALQSIPTGVQTSRKNNQSKEKTKEDKLGDKDTG 702

Query: 251  IDLVDMS----------------EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
            +     S                E  +  + +   +   ++           +       
Sbjct: 703  LKNEKASTLSLGYEEKRELIANIEEAVAFVTTMIFLDGSSQLNTEQHQNLIMNLQKLYTI 762

Query: 295  LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +        G +  T    G + TGR S      Q + +     +             TI
Sbjct: 763  MMGLAHDLQGFICPTWNQTG-TVTGRLSSKHPNIQGISKHPVRIKKKQYIKGKEEEIVTI 821

Query: 354  ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
            +          R+  ++  G   + AD + IE R+LA ++ E   +K F   E   + T 
Sbjct: 822  SP---------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQEPETADIFTS 872

Query: 414  --AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
              ++    P ++V +  R   K +                                    
Sbjct: 873  LASQWKGIPSEQVKQTDREQAKRIV----------------------------------- 897

Query: 472  FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                     + +         A    +         +++  K++ V +  K         
Sbjct: 898  ---------YSVVYGAGKERLAECLGITPLEASCFIESFMQKYKKVHEFTKKTIGQCQNK 948

Query: 532  VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                  +                           R+ + +++      L T   Q  R+ 
Sbjct: 949  GYVVSIM--------------------------GRKRLLANIHSQDYKLRT---QAERQA 979

Query: 592  TYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV 644
                     +VQ  + D+    M                ++  +HDE++ E  D+     
Sbjct: 980  ------VNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARLIAQIHDELLFEVEDSQIQEF 1033

Query: 645  GTLCS-LMT-----KNPSWAKGLPLKAEGYEAKRY 673
              L    M              +PLK      K +
Sbjct: 1034 SALVKRTMESLQQTTALEVPLKVPLKVLLTTGKSW 1068


>gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2]
 gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2]
          Length = 876

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 87/581 (14%), Positives = 157/581 (27%), Gaps = 111/581 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61
           L  DIE  S        +  Y   A I    + WD  +      D T+  A    L Q L
Sbjct: 182 LSCDIEGFS--------LKHY--DAGIGTITFCWDQHNGIAFEVDNTKTKAEDHVLRQAL 231

Query: 62  -------RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101
                  R      + HN  ++  +    L             G+D+  + W CT ++  
Sbjct: 232 KTFFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQLITY 291

Query: 102 TN-----GLPSSLKNACLALN-----FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                  G    LK                     E   L+       + +         
Sbjct: 292 LATNSCAGNELGLKAQAQEFAGNYAVEDIQDITQIELPKLLEYNLVDGLSTWFVYNKHYQ 351

Query: 152 HVQAWQLFGEYCKRDVE--------------ATRELFKRLIPLS--DGERDLWLLDQTIN 195
            +   Q F  Y     +                 +   +L      + E ++W + QT  
Sbjct: 352 TMINDQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNDQLGAESEHNVWKMLQTKI 411

Query: 196 DRG--YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF--LITGI 251
            +G  Y+++ + + K  E +  +     +        +  +      L+  L+     G+
Sbjct: 412 VQGFVYQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGL 471

Query: 252 DL--------VDMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAV-S 300
            +              TL+ +L+   S  T+   +++L   AS+      L    +A   
Sbjct: 472 PVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPG 531

Query: 301 SDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
            DG       F  G + +GR S      QN+P                            
Sbjct: 532 PDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP------------------SSAGGPLKSR 573

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
            +  ++ C  A  G   V  D   +E R+ A    +  K+K + +G D +       F  
Sbjct: 574 LAKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGD 633

Query: 420 PIDKVSK--------------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            +  +                  R   K    AL YQG                 +    
Sbjct: 634 QMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNC-----GFSKEKAQ 688

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                  + ++ +  +     +Q           G      
Sbjct: 689 DIENKYKKMYKVSIEYVEKKLEQATRDGYITVAFGLRVRTP 729


>gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes
           HL025PA1]
          Length = 112

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET SP PL K GV+ YAE     + +  Y+ D  PV++ D      +P ++L
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERI----LFKKTLG-----IDIPSKRWICTSVLAR 101
             L D  V+  AHN+ FER+      ++          +   +W CT V + 
Sbjct: 61  AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMVWSA 112


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 189/701 (26%), Gaps = 186/701 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTE-QSAMPSDLLQ 59
            +  DIET         G+        I    +AW  DD  +         + +      
Sbjct: 36  TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGI-----DIPSKRWICTSVLARTNGL----PSSLK 110
            L +     + HN+ F+     +  G+     +I   + + T +LAR +        SL 
Sbjct: 85  DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143

Query: 111 NAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                 L  S+    M+      G   I    +G     P     A       L  E   
Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203

Query: 165 RDVEATRELFKRLIPL---SDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213
           R +     L          +D E +  L DQ    R        G  +D + + + QE  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHS 268
             ER + +  +     G+   + +   +  YL  I  +               K +L   
Sbjct: 264 DAERIQHEALLAAH--GLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           +         L  +      + K+       +  GR    +   GAS TGR +  + + Q
Sbjct: 322 DHPLTIAQRKLAEVDKVLGYLTKVE---RQAAVTGRCHPQVGVLGASATGRMAYSMPELQ 378

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
             P+  R                                II  +G+ L   D + IE   
Sbjct: 379 QFPKDARP-------------------------------IITDDGQGLTSIDWSQIEPVT 407

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A +AG+   +  F  GED+Y     ++   P+ K                         
Sbjct: 408 MANMAGDVGFLIPFEAGEDLYE-PIQRSCGLPMTKE-----------------GRDIAKV 449

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
             +A+  G+ +   +  +K                                  + + +++
Sbjct: 450 VLLATMYGMGVNGLALKIKH------------------------------TVESAQQIRR 479

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
              A      +    +                                   I+  + R L
Sbjct: 480 QMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGRIL 513

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
              D                             VQ  + D+L   +    + G    L +
Sbjct: 514 PVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMERAGLGDHLQL 554

Query: 629 --HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663
             HDE++ +T          +  +M   P     WA  +P+
Sbjct: 555 AMHDELIVDT-----EVSDEVQQIMLTPPDFLIRWAGRVPV 590


>gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta]
          Length = 1172

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 98/371 (26%), Gaps = 77/371 (20%)

Query: 136  CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
                   P    + A  V  W +      +  E    L   L    + E  +      + 
Sbjct: 867  MDVQSSLPGEFRSAAEAVLTWHMMDNVTSKLEELDPAL---LYTFREVEMRIVTTLACME 923

Query: 196  DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
              G  ++L  + +L  +I+ E + L+     L       S      +M            
Sbjct: 924  LSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGRKFNFSSSKEVGQMIY---------- 973

Query: 256  MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
                                                   L +   +D R+RG       +
Sbjct: 974  --------------------------------------PLLKLAQNDSRIRG--NCITCT 993

Query: 316  RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
             TGR S      QN+P+                               VR   + + G  
Sbjct: 994  VTGRVSMHEPNLQNVPKD-------------------FNFADNNLVISVRMAFVPALGNI 1034

Query: 376  LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
            ++ AD   +E R+L   + +    K      DI+    AK  N   ++V+ E R   K +
Sbjct: 1035 MLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAAKWNNVTEEQVNNEMRQRTKQL 1094

Query: 436  ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
               + Y  G K          L + +        S    +         + ++       
Sbjct: 1095 CYGMIYGMGVKSLAE-----NLCVSEPEAQEFLESFMGAYPGIYKWLNDVLEEAHRDGYV 1149

Query: 496  DKLIGTACELV 506
              L+G   +L 
Sbjct: 1150 ATLLGRRRQLP 1160


>gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2]
 gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2]
          Length = 1415

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/603 (13%), Positives = 163/603 (27%), Gaps = 113/603 (18%)

Query: 5    FIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
              D+ET   + L       Y E   A + + A A DD PV   +    S +  D+   +R
Sbjct: 826  TFDLETGDAERL-------YVEDGQAYVRIGAVAHDDRPV--IELG-GSTVAEDVAARIR 875

Query: 63   DETVMCVAHNSL-FERILFKKTLGIDIPS-------KRWICTSVLARTNGLP-------- 106
                    HN + F+     +   + +          R     + AR    P        
Sbjct: 876  QGA-TITGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVD 934

Query: 107  ----SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                  L    ++    E                         D       +  +LF  Y
Sbjct: 935  ATRKYDLGTLAVSYGLGE-KYTDLSKPLAKKYGGDWGQIPVDTDDPDPERAEDARLFRTY 993

Query: 163  CKRDVEATRELFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              +D E +R L  RL              E  +  L   I   G+ +D  L+ +    + 
Sbjct: 994  MVQDAELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAEVD 1053

Query: 215  QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL----------------ITGIDLVDMSE 258
            Q + +    + +     + +++                                      
Sbjct: 1054 QRKAESLAWLAEHAGVPLANAKGVAYKSPLASTGGKEALEAALRAAGATSFWRTPNSGQF 1113

Query: 259  GTLKSILSHSNITQLAKDLILNRLASSG-------SAILKLNTLSEAVSSDGRLRGTLQF 311
             T    + H    +    L   R  +          ++    TL + +S DGR+   + F
Sbjct: 1114 DTSGEHMKHLA--REYHHLPKVREIAKHVFRIVGARSV--YQTLMDNMSPDGRVHPKIGF 1169

Query: 312  YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
              A  TGRWS        L ++                               R+ ++  
Sbjct: 1170 DQA--TGRWSVTRPGLTVLGKRGGRHVE-------------------------RAVLLPD 1202

Query: 372  NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
             G+ L+ ADL+ ++ R +A ++ +   I+     +                  + ++R  
Sbjct: 1203 PGEVLMSADLSQVDMRAVAGLSQDLAYIEMLKKDDPHAEIAKEL-------FGTADRREE 1255

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
             K +     Y  G K         G +++         S  E + +       ++     
Sbjct: 1256 AKAIGHGWNYGRGIKAISE-----GQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEA 1310

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551
              + D   G       +    +   ++            ++  G     RR+  + R  +
Sbjct: 1311 GQLLDNGFGRLMRADPQRAHTQGPALMG-----QGAARDIMMTGLLRLDRRILPMLRAQI 1365

Query: 552  RRH 554
               
Sbjct: 1366 HDE 1368



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 530  CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
              + EG  I    V      +  R  R V       R +  +    D  +     +   R
Sbjct: 1270 KAISEGQEIEPALVRRFDASMRERFGRLVEWQTEV-RAVAEAGQLLDNGFGRLMRADPQR 1328

Query: 590  ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV-LTVHDEIVSETPDTPYFSV-GTL 647
              T G  L     Q  +RDI+  G+    +    ++   +HDEIV   P      V   +
Sbjct: 1329 AHTQGPALMG---QGAARDIMMTGLLRLDRRILPMLRAQIHDEIVFSVPVAEAEEVGRAV 1385

Query: 648  CSLMTKNPSWAKGLPLKAE 666
               ++    W +G+P+ A+
Sbjct: 1386 VEALS--FEW-RGVPILAD 1401


>gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
 gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
          Length = 191

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 53/208 (25%), Gaps = 44/208 (21%)

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +A +  +         A    +     +     +  ++  V    +++ +      
Sbjct: 17  RRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKAREDG 76

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                            RR     +      L        R   
Sbjct: 77  YVETLFH--------------------------RRRYLPQIHSRNFNLR---KFAERTAM 107

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646
                    +Q  + DI+   M    K          ++L VHDE++ E P      +G 
Sbjct: 108 ------NTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQ 161

Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           L   +M    S A  +PLK E +    +
Sbjct: 162 LVPKIMDSAVSLA--VPLKVESHYGPTW 187


>gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes
           HL030PA1]
          Length = 112

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ IDIET SP PL K GV+ YAE     + +  Y+ D  PV++ D      +P ++L
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  QYLRDETVMCVAHNSLFERI----LFKKTLG-----IDIPSKRWICTSVLAR 101
             L D  V   AHN+ FER+      ++          +   +W CT V + 
Sbjct: 61  AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMVWSA 112


>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
          Length = 1902

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/545 (13%), Positives = 153/545 (28%), Gaps = 141/545 (25%)

Query: 121  HLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               K    K   I +  + ++D+     T +       L   Y              L  
Sbjct: 1456 ISMKDYAMKHNFIRKNERKALDNGEPRLTLS------VLRRCYLGVKKILEDRN---LEN 1506

Query: 180  LSDGERDLWLLDQTINDRGYRIDL----DLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                E +   +   +++ G           +  L  L+ +   K+ +   K       + 
Sbjct: 1507 KFIAEMEHAEIIFQMSENGMPFSESASEKTIKSLSTLMDRLAIKMKKHAPKGMKRDSLNF 1566

Query: 236  RQTYALRMYLFLITGIDL--VDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSA--IL 290
                  R Y++           +S    K +L      +   ++LI  R A    +  + 
Sbjct: 1567 NHLLDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKEPRIRNLIEFRRAQKAFSDLLT 1626

Query: 291  KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
                  +  S D R+  T      +RTGR S      Q +  +      +          
Sbjct: 1627 Y-----KNASRDDRIYSTPVL--INRTGRISMDNPSLQMVQNEFECCGKII--------- 1670

Query: 351  ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                         VR+C  A+  K  +  D   +E RVLA ++G++    +F + ED +V
Sbjct: 1671 ------------KVRNCFRANPKKIFISVDYRQLELRVLALLSGDEGLQASFIDHEDPFV 1718

Query: 411  TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
            +   K      +++S  QR   K +   + Y  G K   T                    
Sbjct: 1719 SIGRKWLK--RERISVAQRTQVKGLVYGVIYGMGNKTLST-------------------- 1756

Query: 471  TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
                                       +     + +   + + + G+ +   D+ +    
Sbjct: 1757 ------------------------TLGVSIEEAKNISSEFMSSYPGMQKFLVDVDKSA-- 1790

Query: 531  VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                                      +++      RR  + +           TS+  R 
Sbjct: 1791 ------------------------SSNLYTETLIGRRRSFDN----------YTSRAARV 1816

Query: 591  RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644
                       +Q  + DI+  G   A +          +VL +HDE++ E  ++    +
Sbjct: 1817 A------VNTKIQGSAADIVKIGTVRAARKIKETGINAKLVLQIHDELLFEVEESQKGLL 1870

Query: 645  GTLCS 649
              +  
Sbjct: 1871 EDILK 1875


>gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4]
 gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4]
          Length = 859

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 99/670 (14%), Positives = 181/670 (27%), Gaps = 112/670 (16%)

Query: 4   LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLL 58
           L +DIET S       +  +       +      A+  D EP++          + + L+
Sbjct: 183 LAVDIETFSLKHYDCGIGTITFCWNKHE----GIAFPVDYEPIEGATEAPYGRQVHNMLV 238

Query: 59  QYLRDETVMCVA-----HNSLFERILFKKTL-------------GIDIPSKRWICTSVLA 100
           + +  +  +        HN  F+       L             G+ I  + W CT ++ 
Sbjct: 239 RSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLRNWDCTKLIT 298

Query: 101 RTN-----GLPSSLKNACLAL--NFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRA 150
                   G   SLK+       N+++             L+       + +        
Sbjct: 299 YLATNSCAGNKLSLKDQAQEYAGNYAQEEINDITRIPLAELLEYNLVDGLCTWYVYEKHW 358

Query: 151 NHVQAWQLFGEY-CKRDVEATRELFKRLIPLSDGERDLW----LLDQTINDRGYRI-DLD 204
           + +   Q    Y           +  +L  +    + +      L Q  N+    I D  
Sbjct: 359 DTLVNDQQLDVYTNIFKPACEDIIQMQLTGMPINMKTVLGVEEALTQDYNNALKTIADSK 418

Query: 205 LVLKLQELIAQERKKLDEDIVKLTD------GIIRSSRQTYALRMYLFLITGIDL----- 253
           ++     L+ +E  +    I+K             +      L+  LF    + +     
Sbjct: 419 VIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQFNPNSGVQLQKLLFEFLELPVLGLTA 478

Query: 254 ---VDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAV-SSDGRLRG 307
                   G LKS+ +H+  T + + L  +++  A        +  L  A    DG    
Sbjct: 479 SKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFIPALKNARQGPDGWHYL 538

Query: 308 TLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                 G + +GR S      QNLP   R                         +  ++ 
Sbjct: 539 FGNLNLGGTVSGRLSSSEPNLQNLPSGSR------------------------YAKIIKK 574

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI----- 421
           C  A  G      D A +E R+ A    +  K+K + +G D +       F   +     
Sbjct: 575 CFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYFGEMMPDIED 634

Query: 422 --------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                    +  K  R   K    AL YQG                 +    +       
Sbjct: 635 TVESVNSIQEKYKAYRQDSKAPTFALTYQGTYITL-----MKNCGFPEQKARMVEERYHT 689

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            ++ ++       DQ  +        G                + Q+ +  ++       
Sbjct: 690 LYKVSDDWVQAKLDQAAKDGYVTVAFGLRVRT---------PLLQQVIRGTSKTPYEAEA 740

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
           EG +       +   L  R     +  V  S  RL                   M    Y
Sbjct: 741 EGRTAGNALGQSWCLLNNRAGSEFMRKVRNSKHRLDIRPSTHIHDAQYFLIRDDMDVVIY 800

Query: 594 GGKLTENIVQ 603
                   VQ
Sbjct: 801 TNTHLVKAVQ 810


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 84/585 (14%), Positives = 165/585 (28%), Gaps = 136/585 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61
           L  DIE  S +            +A +   ++AW+  +      D          +   L
Sbjct: 190 LSADIEAWSLK----------FYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLL 239

Query: 62  -----RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLARTN 103
                  +  M   HN  ++  +    L             G+D+ +K W  T ++    
Sbjct: 240 KGFFTEYKGKMLW-HNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYLA 298

Query: 104 -----GLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                G    LK        N++    K     +LI +      +     CT   + + W
Sbjct: 299 TNSCAGNHLGLKAQSHEYAGNYALDDIKDI---SLIPKKDLVRYNLIDSLCTWYVYGKHW 355

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
           Q   +      +  REL+  L                +   G  +D++ VLK+++++ +E
Sbjct: 356 QTMND------DNQRELYDDLF------MPSLKNIIQMQLTGIPLDMEEVLKVEKILIKE 403

Query: 217 RKKLDEDIVKL------------------------------TDGIIRSSRQTYALRMYLF 246
           +    ++++K                                     +      L+  L+
Sbjct: 404 KVTFYQEMLKFSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLY 463

Query: 247 LITGIDL--------VDMSEGTLKSILSHSNITQLAKDLILNRLASS--GSAILKLNTLS 296
            I G+ +              T++ +       + A+ L L    S         +    
Sbjct: 464 DIMGLPVIDLTDTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFIPAFK 523

Query: 297 EA-VSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
            A  + DG       F  G + +GR S      Q +P                       
Sbjct: 524 AAPKAEDGWHYLFGFFNLGGTVSGRLSSSNPNLQQIP----------------------- 560

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                 S  ++ C  A  G   V  D A +E R+ A    +  K+K + +G D +     
Sbjct: 561 SSKSPYSKVIKKCFRAPKGFLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRAY 620

Query: 415 KAFNTPI-------------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461
             F   +             +   K+ R   K     L Y+G       M         +
Sbjct: 621 AYFKDEMPDIINTVESINSIEGKYKDIRQKSKTPTFLLTYRGTY-----MGLMQKCGFDE 675

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
            +     +   E +++++       ++  +        G      
Sbjct: 676 PTAKQIESRYHELYKESDDWVNARLEEATKVGYVTAAFGLRVRTP 720


>gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 587

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/549 (14%), Positives = 147/549 (26%), Gaps = 103/549 (18%)

Query: 1   MSKLFIDIETRS-PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           M  ++ D+E+    + L K           I   A    D+P + W     + + + + +
Sbjct: 1   MRYVW-DLESNGFLEDLTK-----------IHCIAMMNADDPKETW-VFGPNDIKAGMKK 47

Query: 60  YLRDETVMCVAHNSL-FERILFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
                 +  + HN L  +     K      +   +   T VL+R         +    L+
Sbjct: 48  LAEATEI--IGHNILGHDVPALMKVYPNFSLDGVKLTDTLVLSRLITADLRNDDYERILS 105

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +   K     +L A   +       +   + +  +  Q   +YC++DV     ++K L
Sbjct: 106 IDDFPRKYYGSHSLKAWGYRLGEYKGDFG-EQTDWSEWTQGMQDYCEQDVVVNYAVWKHL 164

Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226
            P        D E  +  +   I   G+  +++    L   +A E+ +L+ ++ +     
Sbjct: 165 DPDSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYGQLAGEKAQLESELKELFPPW 224

Query: 227 ------------------------LTDGIIRSSRQTYALRMYLFLITGIDL----VDMSE 258
                                       I  +      ++  L                 
Sbjct: 225 TKEEIFIPKRNNKTLGYVADEPFIKCKEITFNPNSRKHIQRCLMDKYDWKPRQFTYSGDA 284

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGA 314
              + +LS     +  K   L R       I  L    N     V     L   +   GA
Sbjct: 285 KIDEGVLSRLPYPEAKK---LARSFLLQKRIGMLAEGNNAWLRLV-EGNTLCHVINPNGA 340

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
             TGR +   F    +P                                 R       G 
Sbjct: 341 -VTGRATHFNFNTAQVP-----------------------SVRAPYGKECRELFGVPEGY 376

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
            LV +DL+G+E R LA +  +  K           +   A      +  +    R   K 
Sbjct: 377 SLVGSDLSGVELRCLANVLQDQGK--------YANIILNADIHLANMHSMGLTSRDQAKT 428

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
               + Y GG      +     +            +  +           ++    +   
Sbjct: 429 AIYCMIYGGGDARLGEV-----VGKGAAEGRTLRNNFMKANPAFADLVRQLKQVVTKRGH 483

Query: 495 KDKLIGTAC 503
              L G   
Sbjct: 484 LVGLDGRKL 492


>gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
 gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
          Length = 684

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 103/774 (13%), Positives = 173/774 (22%), Gaps = 199/774 (25%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEP----VKLWDRTEQSAMPSDL 57
           +L  DIET               +   I   A    D               +  +   L
Sbjct: 5   RLCYDIETDGL----------IEDVTRIHCIAIINVDTHEEALYADYLVMMTKGTIKDGL 54

Query: 58  LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-------------- 102
            + +R    + + HN   ++  + KK  G+++P  +   T V AR               
Sbjct: 55  DRLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIKDIDQRNSG 112

Query: 103 ------NGLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                      SL+   + L                               D        
Sbjct: 113 KYTLGKLFGSHSLEAWGIRLGGNLKME-YAPVIDPDQPVYDPTVKPKDAKKDPRWK-GSI 170

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDL 205
              + G+YC +DV    +LF RL               E D   +       G++ D + 
Sbjct: 171 FTPMMGDYCMQDVRVNVDLFHRLERKAAELNYARSLKLEHDAAWVLAQQERNGFKFDEEK 230

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGII--------------------------------- 232
            +KL   +A  R+ L  ++++   G                                   
Sbjct: 231 AIKLLGRLAGRREFLYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQGAPFTKVKW 290

Query: 233 --RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      +   L                   ++IL        AK +    L     
Sbjct: 291 VDFNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFP-EAKLMAEWFLVQKRL 349

Query: 288 --AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                        V  DG +RG++   GA  TGR +        +P              
Sbjct: 350 GQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVP-------------- 394

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV---LAWIAGEDWKIKAF 402
                              R       G  L+ +D +G+E R          +   I   
Sbjct: 395 ---------SCGAEYGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVV 445

Query: 403 AN---GEDIYVTTYAKAFNTPIDKVSK---EQRAIGKVMELALGYQGGAKVFKTMASHCG 456
            N              A  T  D  +    E R   K    A  Y  GA+          
Sbjct: 446 LNGDIHWANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE------LTGQ 499

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                  + +   +               +    E            E V+K +      
Sbjct: 500 QVGWTEEEYLNWKAKGAHKPIINRFKRQGKPWTREKV----CNILKGEEVQKNFMKGLPA 555

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +  L +   E                                 I     RR+        
Sbjct: 556 LKNLIEICKEQHKTNKY--------------------------IEGIDGRRIYTRSEHAS 589

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD-------I- 624
                                   ++Q     +    +    K     GY        + 
Sbjct: 590 ---------------------LNTLLQGAGALVCKAWIVEIEKLAIQAGYKHGADGDFMY 628

Query: 625 VLTVHDEIVSETPDTP-YFSVGTLCSL-MTKNPSWAKGLP--LKAEGYEAKRYR 674
              VHDE+            +G LC + M+            L A+    K ++
Sbjct: 629 CAWVHDEVQIACRTKEIAEHIGQLCQVAMSN-VEKEFNFICRLDADFQIGKSWK 681


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 109/411 (26%), Gaps = 118/411 (28%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T V++  +        SL+     L FS                               
Sbjct: 1   DTLVMSSLSNPNREDGHSLRAWGERLGFS--------------------------KGDHT 34

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS--------DGERDLWLLDQTINDRGYRID 202
           +  +      +YC RDVE T +L++ L+           + E ++  +       G+ +D
Sbjct: 35  DWTRLTPDMEKYCVRDVEVTEKLYQHLLKELDGFDVSSIELEHEVQRITARQVRLGWLLD 94

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTD--------------------------------- 229
           L    +L  L+ +++ +L++ +                                      
Sbjct: 95  LKYAHQLLALLKEKKYELEDKVQDTFRPLPTFIREVTPRCKKDHTLSAVGLKFLGEQWSD 154

Query: 230 ---------GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDL 277
                        +      +  YL            +G     +S+LS       A  L
Sbjct: 155 VCGPFSRVDCPEFNLGSRQQIGRYLQHFGWKPTKFTEKGHAIVDESVLSKITDIPEA-QL 213

Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           I   L      + ++ +  EA   DGR+ G +   GA  TGR +        +P      
Sbjct: 214 IAEYLMVQKR-VAQIQSWIEAADDDGRVHGRVNTNGA-VTGRMTHSEPNLAQVP------ 265

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                      RSC     G  LV  D +G+E R+LA   G+  
Sbjct: 266 -----------------AVRAPYGKECRSCWTVPEGYSLVGFDASGLELRMLAHYMGD-- 306

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
                   E      +             E R   K    A  Y  G    
Sbjct: 307 -------REYTNEILHGDIHTANQHLAGLESRDQAKTFIYAFLYGAGDAKL 350


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 104/400 (26%), Gaps = 123/400 (30%)

Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                      L   ++    ++  T      + +GR+S      Q +PRQ         
Sbjct: 1   MYKLYSAFYLKLPLHINKQTNKIHTTFNQLK-TFSGRFSSEKPNLQQIPRQ--------- 50

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402
                                +R   I S     ++AD   IE ++ A I  ++  +KA+
Sbjct: 51  -------------------QNIREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAY 91

Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
            N  D++  T +      ID+++KE R + K +   L                       
Sbjct: 92  NNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLL---------------------- 129

Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522
                      ++    ++               K+    C     ++   ++G+ +   
Sbjct: 130 --------YGMNYVNLRTYANTY--------YNVKMNLDQCLYFYNSFFEHYKGLSRWH- 172

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
                         S  + R    P                                   
Sbjct: 173 ---NSVKQTRALEYSTLSNRKVVFPYFSFT------------------------------ 199

Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638
                        K     VQ    DIL   +    KN       I+L VHDEI+ E   
Sbjct: 200 -------------KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDK 246

Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY--EAKRYRK 675
                    L   M  + S+     +K E     A+ + K
Sbjct: 247 KHQEEALKILVESMESSASFFLK-KVKCEVSAKIAQNWGK 285


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/564 (13%), Positives = 137/564 (24%), Gaps = 140/564 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVI--TLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58
           ++  DIET              A  A +   L A     +       D      +   + 
Sbjct: 2   EVVFDIETD-------------ALDATVIHVLVAKRV-GQKGFYVVRDAETFKRLAKQV- 46

Query: 59  QYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNAC 113
                   + + HN   F+    KK  G  IP K    T V++R          SL    
Sbjct: 47  -------TLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALS 99

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                         G   I      +                      YCK+DV    ++
Sbjct: 100 --------------GNEKIDFHDFSTYT---------------PEMLAYCKQDVAINEKV 130

Query: 174 FKRLIPLS--------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           + +L              E  +  +       G+ +D D+  ++     +E  +++ +I 
Sbjct: 131 YLQLKEELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIK 190

Query: 226 KLTD--------------------------------------GIIRSSRQTYALRMYLFL 247
           +                                             +      +   L  
Sbjct: 191 EFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-D 249

Query: 248 ITGIDLVDMSEGTL------KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
             G      ++         +++ +  +    A   +                  +    
Sbjct: 250 RLGWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRW-KLAQEWLQKSQE 308

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+ G +   GA  T R +       N+P     ++ +   ++ +              
Sbjct: 309 TGRVHGRVILTGA-VTHRAAHQGPNMANIPSVPHGKDGILWKMEGM------------YG 355

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R       GK LV  D AGI+ RVLA    +           +  +      FN   
Sbjct: 356 AECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP-------IYTEQVIDGDIHTFNKEA 408

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                + R   K    A     G  +  ++     L       N    + +E     +  
Sbjct: 409 LGRYCKDRPTAKTFIYAFLLGAGTGMIASI-----LGCNNRQANEAMANFYEAIPSLKK- 462

Query: 482 HLWMQDQYPEFAVKDKLIGTACEL 505
                 Q         L G    +
Sbjct: 463 LKSQASQAASMGWMKGLDGRVLRI 486


>gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
 gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
          Length = 359

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 102/348 (29%), Gaps = 53/348 (15%)

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA----GEDWKIKAF 402
                            VR       G   + ADL+ IE R++A I     G++     F
Sbjct: 29  KGSNLQNIPARSKEGARVRGAFKPQEGWFYLAADLSQIEPRIMAHIMWTIYGDNSLRSIF 88

Query: 403 ANGEDIYVTTYAKAFNTPIDKV---------SKEQRAIGKVMELALGYQGGAKVFKTMAS 453
             G D+Y T     FN               + + RA+ K   LA  Y           +
Sbjct: 89  TAGRDLYTTMAMMVFNLDEKYCVDKAYDPTGTFKPRAMMKTGVLAKSYDQQVG---NFCN 145

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
             G+ ++    N+        +    +     +    +    + L G            +
Sbjct: 146 TMGVSIEVG--NMFYEKFDTAFPSFINMVRDKRKFAYDKGYSETLYGRK---------RR 194

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              + +  K +      ++      +  R   V         R     L +   L+    
Sbjct: 195 FPQLAEWSKIVKRNERKLMDLYIERARIRKKVV-------KSRYDFERLDTLEELIKPMA 247

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629
           +     +        R          +++Q    DIL   M        K G+ +  ++H
Sbjct: 248 E-----MRNMVGYWERAS------FNSVIQGTGADILKLNMIRLYRECQKRGWYLNASIH 296

Query: 630 DEIVSETPDTP--YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           DEI  E P       +   +  +MTK+      LPLK++      + K
Sbjct: 297 DEIKVEVPRKDLTLENCDLITDIMTKSVE--LSLPLKSDTVIETVWGK 342


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 191/715 (26%), Gaps = 188/715 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTE-QSAMPSDLLQ 59
            +  DIET         G+        I    +AW  DD  +         + +      
Sbjct: 36  TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGI-----DIPSKRWICTSVLARTNGL----PSSLK 110
            L +     + HN+ F+     +  G+     +I   + + T +LAR          SL 
Sbjct: 85  DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLT 143

Query: 111 NAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                 L  S+    M+      G   I    +G     P     A       L  E   
Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203

Query: 165 RDVEATRELFKRLIPL---SDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213
           R +     L          +D E +  L DQ    R        G  +D + + + QE  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHS 268
             ER + +  +     G+   + +   +  YL  I  +               K +L   
Sbjct: 264 DAERIQHEALLAAH--GLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGF 321

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
           +         L  +      + K+       S  GR    +   GAS TGR +  + + Q
Sbjct: 322 DHPLTTAQRKLAEIDKVLGYLTKVE---RQASVTGRCHPQVGVLGASATGRMAYSMPELQ 378

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
             P+  R                                II  +G+ L   D + IE   
Sbjct: 379 QFPKDARP-------------------------------IITDDGQGLTSIDWSQIEPVT 407

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
                                                     +   +   + ++ G  ++
Sbjct: 408 ---------------------------------------MANMAGDVGFLIPFEAGEDLY 428

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           + +   CGL + +  +++          +               A+K      + + +++
Sbjct: 429 EPIQRSCGLPMTKEGRDI---------AKVVLLATMYGMGVNGLALKINHTVESAQQIRR 479

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
              A      +    +                                   I+  + R L
Sbjct: 480 QMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGRIL 513

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628
              D                             VQ  + D+L + +    + G    L V
Sbjct: 514 PVDDGGVFR-------------------AVNYTVQGSALDVLHDTIVRMERAGLADELHV 554

Query: 629 --HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLP-LKAEGYEAKR-YRK 675
             HDE++  TP         +  +M   P     WA  +P L+ +  + +  ++K
Sbjct: 555 AMHDELIVSTP-----VADEVQQIMLTPPDFLIRWAGRVPVLRTDAADMEHAWKK 604


>gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
 gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
          Length = 684

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 97/766 (12%), Positives = 171/766 (22%), Gaps = 183/766 (23%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEP----VKLWDRTEQSAMPSDL 57
           +L  DIET               +   I   A    D               +  +   L
Sbjct: 5   RLCYDIETDGL----------IEDVTRIHCIAIINVDTHEEALYADYLVMMTKGTIKDGL 54

Query: 58  LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-------------- 102
            + +R    + + HN   ++  + KK  G+++P  +   T V AR               
Sbjct: 55  DRLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIQDIDQRNSG 112

Query: 103 ------NGLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                      SL+   + L                               D        
Sbjct: 113 KYTLGKLFGSHSLEAWGVRLGGNLKME-YAPVIDPDQPVYDPTVKPKDAKKDPRWK-GSI 170

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDL 205
              + G+YC +DV    +LF RL               E D   +       G++ D + 
Sbjct: 171 FTPMMGDYCMQDVRVNVDLFHRLERKVAELNYARSLKLEHDAAWVLAQQERNGFKFDEEK 230

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGII--------------------------------- 232
            +KL   +A  R+ L  ++++   G                                   
Sbjct: 231 AIKLLGRLAGRREFLYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQGAPFTKVKW 290

Query: 233 --RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
              +      +   L                   ++IL        AK +    L     
Sbjct: 291 VDFNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFP-EAKLMAEWFLVQKRL 349

Query: 288 --AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                        V  DG +RG++   GA  TGR +        +P              
Sbjct: 350 GQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVP-------------- 394

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                              R       G  L+ +D +G+E R L           A    
Sbjct: 395 ---------SCGAEYGAECRELFTVPEGWWLLGSDASGLELRCL-----------ANFMA 434

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
                       N  I   + +                 A  F    +          + 
Sbjct: 435 RYDGGKYIDVVLNGDIHWANAQ-----------------AAGFIAKGTIRDPHNPIHEEA 477

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                      +   +             +                  +       K + 
Sbjct: 478 -------RRKAKTFIYAFLYGCGAELTGQQVGWTEEEY---------LNWKAKGAHKPII 521

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
             F    +         +     +     K      LP+ + L+    +   +       
Sbjct: 522 NRFKRQGKPWTREKVCNILKGEEVQKNFMKG-----LPALKNLIEICKEQHKTSKYIEGI 576

Query: 586 QLMRERTYGGKL-TENIVQAISRDILCEGMKNATKN----GYD-------I-VLTVHDEI 632
              R  T         ++Q     I    +    K     GY        +    VHDE+
Sbjct: 577 DGRRIYTRSEHASLNTLLQGAGALICKAWIVEIEKLAIQSGYRHGADGDFMYCAWVHDEV 636

Query: 633 VSETPDTP-YFSVGTLCSL-MTKNPSWAKGLP--LKAEGYEAKRYR 674
                       +G LC + M+            L A+    K ++
Sbjct: 637 QIACRTKEIAEHIGLLCQVAMSH-VEKEFNFICRLDADFQIGKSWK 681


>gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
 gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
          Length = 96

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M  L +D+ET S   L K GV+ YAE     I L  Y+ D   V++ D  +   +P  +L
Sbjct: 1  MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60

Query: 59 QYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
            L DETV   A N+ FER+   + L   GI++   
Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDKGINVNPG 96


>gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 45/185 (24%)

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  +  +     + A++ GV    +   E                             
Sbjct: 1   MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGY---------------------- 38

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
               +     RRL   D+K          S   R            +Q  + DI+   M 
Sbjct: 39  ----VETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY 668
                    +    +++ VHDE+V E  ++   +    L   M      A  +PL  E  
Sbjct: 85  AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142

Query: 669 EAKRY 673
               +
Sbjct: 143 IGDNW 147



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/93 (8%), Positives = 23/93 (24%), Gaps = 9/93 (9%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           + +++          F  +    ++    ++Q  E    + L G    L           
Sbjct: 1   MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYL---------PD 51

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
           +       +      +      +A  +     L
Sbjct: 52  IKARGPRRSAAERTAINAPMQGTAADIIKRAML 84


>gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 45/185 (24%)

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +  +  +     + A++ GV    +   E                             
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGY---------------------- 38

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
               +     RRL   D+K          S   R            +Q  + DI+   M 
Sbjct: 39  ----VETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84

Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY 668
                    +    +++ VHDE+V E  ++   +    L   M      A  +PL  E  
Sbjct: 85  AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142

Query: 669 EAKRY 673
               +
Sbjct: 143 IGDNW 147



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 9/93 (9%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           L +++          F  +    ++    ++Q  E    + L G    L           
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYL---------PD 51

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
           +       +      +      +A  +     L
Sbjct: 52  IKARGPRRSAAERTAINAPMQGTAADIIKRAML 84


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 77/279 (27%), Gaps = 85/279 (30%)

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           IE R++A ++G+   I AF+ G+DI+++T A+ F   +D+V+ EQR   K +        
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINF------ 54

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                       G+                                   + +  +     
Sbjct: 55  --------GLIYGMS------------------------------AFGLSRQLGISRPDA 76

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     +  ++  V Q   D+                                   +   
Sbjct: 77  QKYMDLYFQRYPSVQQFMTDIRAKAKAQGY--------------------------VETL 110

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620
             RRL   D+    +          R            +Q  + DI+   M    +    
Sbjct: 111 FGRRLYLPDINSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRH 161

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656
               ++++ VHDE+V E            +   M     
Sbjct: 162 DPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAE 200


>gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 214

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 44/224 (19%)

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
           + +   S   + T       +A +  +         A    +     +     +  ++  
Sbjct: 24  MKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQ 83

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +    K   +           +                           RR +  D+   
Sbjct: 84  IKDYMKAAVKLAREKGYAETIMH--------------------------RRRLLPDIHNK 117

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHD 630
              + +      R          + +Q  + DI+   M          K    ++L +HD
Sbjct: 118 NFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHD 168

Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           E++ + P      + TL   +M +       +PL A+      +
Sbjct: 169 ELLFDVPSEELDLIKTLVLKIMQQAAQ--LDVPLIADANWGHNW 210



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 15/138 (10%)

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
              ++AF  G DI+  T  K F     D+V+   R   K +   + Y             
Sbjct: 6   KIMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYG-----ISDYGLA 60

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L + +        + FE + Q + +         E    + ++           R   
Sbjct: 61  KNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHR---------RRLL 111

Query: 515 QGVLQLWKDLTEGFACVV 532
             +     ++        
Sbjct: 112 PDIHNKNFNIRSFAERTA 129


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/611 (13%), Positives = 180/611 (29%), Gaps = 69/611 (11%)

Query: 1   MSKLFIDIETRSPQPLPKV--GVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAM-P 54
           M    +DIET +  P  K+   +  +     ++ IT  A       V        + +  
Sbjct: 1   MKINSLDIETEAVDPAEKLYAALQPWRLRQGRSRITSIAVCRPGFTVDQIVNRGDNTLWL 60

Query: 55  SDLLQYLRD-ETVMCVAHNSLFERILF------KKTLGID--IPSKRWICTSVLARTNGL 105
            +++  L      +  AHN+LF+          ++   I   +   +W  T +L +    
Sbjct: 61  REMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWLIN 120

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
               +    + + +  +    +   +   F K                       +  + 
Sbjct: 121 GQQPETMRFSYSLANLVATFLKDDEMTPFFVKMKSQGVSPGDNPEYCE-------KRGEL 173

Query: 166 DVEATRELFKRLIPLSDGERD--------LWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           D   T +L  +L      E+           L        G RID + V +  +  ++ +
Sbjct: 174 DAIMTLKLALKLQAHMSKEQRTGFLTEQDCLLPVANSWIMGIRIDREQVRRNDKFFSESK 233

Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-----------LKSILS 266
             + + +             T  L   LF    + ++  +              L+  L+
Sbjct: 234 TAIAKKL----GLDEGIFTSTKRLPDLLFKEWLLPVISKTPSGNPSCNADTLKLLQYQLN 289

Query: 267 HSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGC 323
            +  T++A  L  IL     S      + ++ EA+   G            + TGR++  
Sbjct: 290 EAGNTEMADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRIFGTYTGRFTYS 349

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                        +           +       +      VR  +IA  G ++  AD +G
Sbjct: 350 S-------TTNGKDYEDDNAKTKKFKSAIAVHQIPRRDKMVRKSMIAPEGYEIYEADASG 402

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------------VSKEQRA 430
            E+R++A  + +   I+ F+   + +  T A                         EQR 
Sbjct: 403 QESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAEGDEGGYYTEQRQ 462

Query: 431 IGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
           +GK+  L+  Y+ G K     A       L   +      +    ++    +   +  + 
Sbjct: 463 LGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQTFNRTYKGVPQYWEDVVWES 522

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
            +    +   G   +L              +   +    A + +     +  +V     L
Sbjct: 523 RKQGYTETFGGRRYKLTDWHSHKWITESSAINVPIQGAGADMKEIAIKETFEKVPEALFL 582

Query: 550 VMRRHKRDVHI 560
           +        ++
Sbjct: 583 LDLHDANFFYV 593


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 119/449 (26%), Gaps = 126/449 (28%)

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
             +   +  L+  L    GI +        +  L   +      D I+     +      
Sbjct: 3   CDNLNSSKQLKQSLQE-MGIPVTS----VQEGKLKLFSSKYSIVDEIVRYKKYNKLVTTY 57

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
            + L   +S DGRLRG     G ++T R S      Q++P+                   
Sbjct: 58  GDKLKNQLSKDGRLRGHWNLIG-TKTSRMSCQKPNFQSIPK------------------- 97

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                       ++    A      ++ D + IE R+LA I      I AF  G D++V 
Sbjct: 98  -----------EMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHVE 146

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
           T         + +S  +R +GKV+   L Y       K                      
Sbjct: 147 TAKAI--LNQESISDSERKLGKVVNFGLIYGLTPFGLK---------------------- 182

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            E                        +     E     +   +  V +  +         
Sbjct: 183 -EKINAIPGF---------------NISEYKAEEFIANYFKMYPEVAKYQQQQQ------ 220

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
                  +           + R K                                    
Sbjct: 221 -YSDIITTLGGSYWDNTNGLDRLKPRQRY------------------------------- 248

Query: 592 TYGGKLTENIVQAISRDILCEGMK---NATKNGYDIVLTVHDEIVSETPDTPYFSVGT-L 647
                     VQA   + L E +       ++ + +V  +HDEI+ E P+T   +    L
Sbjct: 249 -------NYAVQASCAEGLKESLALFCKLKQDKWKLVSAIHDEIIIEVPETEALTAKECL 301

Query: 648 CSLMTKNP-SWAKGLPLKAEGYEAKRYRK 675
              M        K +P++     +K ++K
Sbjct: 302 KQAMIDGMGKLVKKIPIEVSVNISKTWKK 330


>gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 193

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 39/222 (17%)

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
             +   +   G  +++  + +L +   Q    L+++I  L  G   +      L   LF 
Sbjct: 1   MKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFN 59

Query: 248 ITGI---------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
             G+              +   L+++             ILN    S       + L + 
Sbjct: 60  KMGLNKKKKSKKSGSYSTNYEVLEALEEE---GVEIASKILNWRHLSKLKGTYTDALIKQ 116

Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
           V   DGR+  +      +  GR S      QN+P                          
Sbjct: 117 VDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIP------------------------IR 151

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
               + +R   IA  G K++ AD + IE R+LA +A      
Sbjct: 152 SEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFK 193


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 75/684 (10%), Positives = 161/684 (23%), Gaps = 190/684 (27%)

Query: 125  MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             E   + I    +    +     T       +  F +   + +     +   L+      
Sbjct: 862  DEFDYSYINFDEQSFYAAGDTYATYEAFKLDYMNFLKRDSKSILKEYPIPLVLLN----- 916

Query: 185  RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT------------DGII 232
             D+ L    I  +G +I+ D    ++    +  ++L ++I                    
Sbjct: 917  -DILLPISVIQSQGIKIEPDDYEFMKINFKRSLEELLKNIYNHPDLKPYIEEFEAKYKEK 975

Query: 233  RSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDLI-------- 278
             + +    L    +    +     +          +S +       +  + I        
Sbjct: 976  FNIQSAEHLTHMFYDYLQVPDKYKTFTDKGNIQMNESAIKKIKGIDIEDESIQDKKKVEI 1035

Query: 279  --------LNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                    L     S      + +     +     +     F   + TGR S      QN
Sbjct: 1036 AKYLAEKTLEYRTFSKLYSAYIQSYNKNDLIDTNYIVHPNYFTTGTVTGRMSSSEPNFQN 1095

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P+ +  +E   + I       +                    G  L+ AD + +E RVL
Sbjct: 1096 IPKGDLPKEFQVKNIFVSRYLNSNKYFEDNDYKK------PITG-ILLQADYSQMELRVL 1148

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR-------------------- 429
            A ++ ++    AF +GEDI++ T              ++                     
Sbjct: 1149 AMVSQDENLKNAFISGEDIHLATAKSITGMDYLSKDVDENTEITPEVKNLITKYKQYWGK 1208

Query: 430  ----------------------AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
                                     K +   + Y   A           +++        
Sbjct: 1209 EAENLTDKEILSKIAHDTEVIRKKAKTVNFGIVYGMTAA-----GLAERINVSLKEAEKF 1263

Query: 468  STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                       +++ +  Q +  E    + +      L+                D+ + 
Sbjct: 1264 IEQYLNALPGVQNYIITKQTKAKEKGYVETIWNRKRNLL---------NAKVYLHDIEQI 1314

Query: 528  FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
                                        +      P   +L Y+++      +    ++ 
Sbjct: 1315 IK----------------------HYKDKLYSKNTPEEDKLFYNNIIYGLKQMYYVGTKS 1352

Query: 588  MRERTYGGKLTENIVQAISRD-------ILCEGMKNATKNG-------------YDIVL- 626
            +R+           +Q  + D        L        +                  VL 
Sbjct: 1353 LRQSINAP------IQGGASDFTFVSLICLNHAFLTLKELNIPVYNKETNQIEYIRPVLI 1406

Query: 627  -TVHDEIVSETPDTP----YFSVGTLCS-LMTKNP------------SWAKG-------- 660
             TVHD IV + P          V  L   +M                  A          
Sbjct: 1407 GTVHDSIVIDIPVHTKHYIVHKVIKLVKTIMEDPLNYFINIFLPDVYKVAPDVNLTELKK 1466

Query: 661  -----------LPLKAEGYEAKRY 673
                       +PLK++     R+
Sbjct: 1467 ELNSIRDLYLQVPLKSDVEVGYRW 1490



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 70/262 (26%), Gaps = 51/262 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDE----PVKLWDRTEQS------ 51
            + +DIET     L       +     IT+ +    D +       +     +       
Sbjct: 481 FVALDIET---NGLKGYSTDKHKN--TITMFSITKVDPKTKQLKTYVIGYEHKDIMNQMD 535

Query: 52  ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVL 99
                     +   +L YL  E ++ + HN  F+       L I   +I   R+  T  +
Sbjct: 536 EKSFKLYKNNVRKLILNYLNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDTINI 595

Query: 100 ART-----NGLPSSLKNAC-------LALNFSEH-----LTKMEEGKALIARFCKGSIDS 142
                         L N             +          K+ E  +LI +F K  +  
Sbjct: 596 LYLRMEEKLKGWQKLDNLAMLRSKLRTYYFYMHDYVDTLKNKLSELNSLINKFRKYDLTE 655

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW---LLDQTINDRGY 199
               C    +      +  Y     +   E    L         ++     D   +  G 
Sbjct: 656 SQISCFLNINKTLINYYYIY---RTKLDIENKNSLNDFLKYMITVFSANNYDDYYSLLGK 712

Query: 200 RIDLDLVLKLQELIAQERKKLD 221
            +D+   L+   L      KL 
Sbjct: 713 NLDVLNHLRESGLDEVTIAKLL 734


>gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 276

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 83/306 (27%), Gaps = 67/306 (21%)

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                 +++ +                         GK   +     + +        + 
Sbjct: 1   SVDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSA 38

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
                       +   E    +++R          L  +   +   G  +++  + +L +
Sbjct: 39  KTLIAIHEKLKQRLFQEKLFTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSD 92

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLK 262
              Q    L+++I  L  G   +      L   LF   G+              +   L+
Sbjct: 93  KFQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLE 151

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321
           ++             ILN    S       + L + V   DGR+  +      + TGR S
Sbjct: 152 ALEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA-TATGRLS 207

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
                 QN+P                              + +R   IA  G K++ AD 
Sbjct: 208 SSNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADY 243

Query: 382 AGIEAR 387
           + IE +
Sbjct: 244 SQIELK 249


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 54/230 (23%), Gaps = 41/230 (17%)

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
             +  + +    G             ++     +  +  +         +   K+     
Sbjct: 261 SGEKRRCLLEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEA 320

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     W A    + +   +              +                         
Sbjct: 321 KDTVDRWYADRPEIRKWQDEQRRQAQQRGYVTTIL------------------------- 355

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RR    D     +    A S  +R            +Q  + DI    M    +    
Sbjct: 356 -GRRRQLPDAALSRN--RAAQSHALRAAI------NTPIQGSAADIATAAMLRINEDEAL 406

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAE 666
              G+ ++L VHDE++ E P          + + M    +     PL  +
Sbjct: 407 QSMGWRLLLQVHDEVILEGPRETAELARERVVACMRSPFTGLGPKPLLVD 456



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/391 (8%), Positives = 82/391 (20%), Gaps = 51/391 (13%)

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII-----RSSRQTYALRMY 244
           L   +   G  +D   +   Q+    ++++  +   +     +      +      ++  
Sbjct: 45  LLTDMEAVGMAVDRSHLAAAQQQAQADQQRAQDRFRRWAARKVGDAQHMNVGSGAQVQTL 104

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
           LF   G +  D  +G     L        A  L+  +                    D R
Sbjct: 105 LFA--GAENRDKDKGKDPLPLERVFKIPNAMGLMGEKDKRPKK------------MWDIR 150

Query: 305 LRGTLQF-------------YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           L                    G                                     E
Sbjct: 151 LHSVWGQGTKSPLTPEVFTPAGEDEGPAAPPAAACVPACSTPVLKGLAGKAGKARKKLAE 210

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
              +        +R   I  +G      + A +           + +     +GE     
Sbjct: 211 LGLEEEAEDLSVLRG--IGEDGGDATDDEAAALSLDDGELPWPVEQEEIEQESGEKRRCL 268

Query: 412 TYAKAFNTPIDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
              +   +P   + K+    +R   KV+  ++ Y   A             +        
Sbjct: 269 LEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAH-----GLSKDWKVSLEEAKDT 323

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
               + D  +        + Q  +      ++G   +L   A            +     
Sbjct: 324 VDRWYADRPEIRKWQDEQRRQAQQRGYVTTILGRRRQLPDAAL--------SRNRAAQSH 375

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                       +        ++       +
Sbjct: 376 ALRAAINTPIQGSAADIATAAMLRINEDEAL 406


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 45/178 (25%), Gaps = 33/178 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58
           ++  D ET             YA    +   ++ +               E  A+     
Sbjct: 372 EISFDTETT----------GTYAHDVELVGLSFCYKTGEGYYIPCPPSANETQALLQHFK 421

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA-CLA 115
               D +   +  N  ++ I+ K   G+ +   ++  T +            +       
Sbjct: 422 PLFDDASKKWIGQNVKYDLIVLKWY-GVLLAG-QFFDTMLAHYLIEPEGRRGMDYLSAQY 479

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           L +     +   GK    +                      +   EY   D + T +L
Sbjct: 480 LQYEPVHIEELIGKKGKNQL--------------TMKDVELEKIKEYAAEDADITLQL 523


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 88/298 (29%)

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E R++A ++G++  I+AF +G D +    +  +  P+++++ +QR+  K M   L Y  
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY-- 58

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                 T                                          A + K+     
Sbjct: 59  ---GLSTYGL---------------------------------------AQQLKISPKEA 76

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           E ++  + A    V +  + L                                       
Sbjct: 77  ESLRNQYFATFGKVHEYLESLVSTAREKGYTETIY------------------------- 111

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619
             RR  +  +K     +  A  +               +Q  + DI+   M  A+     
Sbjct: 112 -GRRRYFPGLKSPNRAVRDAAERA---------ALNAPIQGSAADIMKIAMIRASDSLRD 161

Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674
                 I+L +HDE+V E           L    M    + A  +PL A       ++
Sbjct: 162 ACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA--VPLDASTGIGSDWQ 217


>gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
 gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
          Length = 875

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/579 (12%), Positives = 141/579 (24%), Gaps = 111/579 (19%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEP------VKLWDRTEQSA 52
           +L  DIE  S       +  +G       A         D +                  
Sbjct: 189 ELTCDIEAFSLSMFDSGIATIGFAWSQHDA----VQIQVDYQEMAEPSGGLYGYCETNEP 244

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVL 99
           M   L  +        + H + F+  +    L             G++I  +    T V+
Sbjct: 245 MRDVLRWFFEQYKGQLIYHKANFDVKVLIYQLYMAHDLDKVGMLRGLEIMCRGMQDTKVV 304

Query: 100 ART-NG----LPSSLKNACLALNFS---EHLTKMEE---GKALIARFCKGSIDSPPYDCT 148
           A            SLK+               K         L+      ++ +      
Sbjct: 305 AYLALNSTSSPSYSLKDLGQEHAGDWSQGDDIKDIRKIPLDQLMEYNAVDAVTTMYVWNK 364

Query: 149 RANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQ------------TIN 195
               + A +    Y    +E     +   L+ +    + L  ++              + 
Sbjct: 365 YYPVMVAEKQDQLYHGLFMESQEMIIHTELVGMPMCPKRLAEVETELTKLRDGYFNTIMQ 424

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLD--EDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           D    +    +L  +E + ++   L   +  +     I  +        + L  + G+  
Sbjct: 425 DPM--VHRTTLLLREEAMVKKNATLKTIQKTIDDFSHIEFNPGSGPQKALLLHKVIGLPV 482

Query: 253 -------LVDMSEGTLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSS- 301
                          L  ++ H        L + +I         +   +          
Sbjct: 483 LDKTPTGQPATGGDELTKLIRHPAGASFKGLLQAMIDLDRVQKILS-AFIPAFKAGRLKA 541

Query: 302 DGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           DG L     F  G + +GR S      QNLP                             
Sbjct: 542 DGMLYLHGSFNLGGTISGRLSSSDPNMQNLPSGS------------------------AY 577

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              ++S  +A+ G     AD A +E R+ A +  +  KIK + +G D +       +   
Sbjct: 578 GKLIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTDGYDGHSMRTFAFWPEK 637

Query: 421 I-------------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
                           +    R   K     L Y G       M     +   +      
Sbjct: 638 CIGIVDTVSSINSIQHIYPGLRGEAKAPHFLLQYGGSW-----MGLVKNVGFAEDEAKRI 692

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
             +  + +  +         +  +        G      
Sbjct: 693 EDNYHKLYSVSADWVATEIQKATKQGYVQLAFGLKLRTP 731


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 120/449 (26%), Gaps = 107/449 (23%)

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +   +   G+ +++  + +L E   + R ++ ++ +++                      
Sbjct: 277 VLAEMEMAGFGVEVGAMQRLHEESVRRRAQVLDENLEIMA-------------------- 316

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
                                 ++   ++ +              L       GR+  TL
Sbjct: 317 --PYDSTG--------------RVVHLVMEHARLDKLIQSYTGLFLQHVDRRTGRVYPTL 360

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
              G + TGR S        LP  +       +                      R  ++
Sbjct: 361 NQVG-TATGRLSMSGANLMALPHDKEEFGEHLRNF--------------------RRALV 399

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G  L+ AD + +E RV+A I  +     AF    D++  T A+ F  P+  V+  QR
Sbjct: 400 ARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERRDVHAQTAARVFRVPLGAVTPAQR 459

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
             GK +   L Y  GA           + L     +    +  + +          + Q 
Sbjct: 460 QAGKQVNFGLVYGMGAAKL-----ARDIGLPDNEASDFIHTFRDVFATLYDQMDRTKAQA 514

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                   L G      + AW    +G+  L            Q    +  +  A+    
Sbjct: 515 FVSGYATSLRG-RRRGFRGAW--SGKGLAWLDWQARFEPWRRQQLAAEVLGKLKADEGLA 571

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609
             R   RD    L     + Y                                Q  + DI
Sbjct: 572 GWRGMDRDDRTTLRELGNMSY--------------------------------QGSTSDI 599

Query: 610 LCEGMKNATKN----------GYDIVLTV 628
           +   M   T               ++L V
Sbjct: 600 VKAAMVRCTAALGPGPGGINSRAQLLLQV 628


>gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM]
          Length = 409

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 115/476 (24%), Gaps = 136/476 (28%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T VL+R           L+     L   +   +  E                      +
Sbjct: 1   DTLVLSRLFNPTREGGHGLEGWGYRLRHKKIEFEDFE----------------------S 38

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL---------IPLSDGERDLWLLDQTINDRGYRI 201
              +       YC++DV    ++++ L               E  ++ + Q   DRG+ +
Sbjct: 39  FSPE----MMAYCRQDVSLNHKVYQHLARVEAAGFSKDAVTLEHSVYRIMQAQRDRGFLL 94

Query: 202 DLDLVLKLQELIAQERKKLDEDIVK----------------------------------- 226
           D    + LQ  + +   + ++ + K                                   
Sbjct: 95  DEKHAMSLQAELNENLSQAEKLVHKTFRPRETQMTLVPLMTKAGKVSKMAQIKGETKKVR 154

Query: 227 ------------------LTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
                               D    +      +  YL                   + +L
Sbjct: 155 LSDEEYAKASANPNEHLVRCDSEPFNLGSRKQIGEYLMEFGWKPAKFTPTGQPIVDEKVL 214

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
           S       A  +I   L      I ++ +  + V  DGR+RG +   GA  TGR +    
Sbjct: 215 SKIKDIPEAA-VIAEYLMLQKR-IAQITSWFKEVGDDGRVRGFVNTNGA-VTGRMTHSHP 271

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
               +P                                 R C    +G KLV  D +G+E
Sbjct: 272 NMAQVPSTG-----------------------SPYGKECRQCWTVMDGYKLVGIDASGLE 308

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R+LA    ++            Y                 E R   K    AL Y  G 
Sbjct: 309 LRMLAHYMNDEG---------FTYELLNGDIHTANQMAAGLESRNQAKTFIYALLYGAGD 359

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                +      D  +  Q+            A         +  +      L G 
Sbjct: 360 AKLGAVVGGNADDGGRLRQSFFDNLP------AFKVLKDRVARAAKRGYLKGLDGR 409


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 107/353 (30%), Gaps = 76/353 (21%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++      G          LR 
Sbjct: 19  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLITSNNQLRE 77

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            LF    +                         L+  R +   + + K  + SEAV+  G
Sbjct: 78  ILFGKLKL------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 113

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             +  +Q                P+N   +E     ++                      
Sbjct: 114 ISKHPIQITT-------------PKNFKGKEDKILTISP--------------------- 139

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPI 421
            R+  ++S G   + AD + IE R+L  ++G+   +K F   E    + T  ++  + P+
Sbjct: 140 -RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPV 198

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           ++V+   R   K +  A+ Y  G +          L +          S  + +++ +  
Sbjct: 199 EQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPIQEAAQFLESFLQKYKKIKDF 253

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                 Q  +      ++G    L           +    + L          
Sbjct: 254 ARAAIAQCHQTGCVVSIMGRRRPL---------PRIHAHDQQLRAQAERQAVN 297


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYG KL ENIVQA SRD+L   M+     G  +V+ +HDE V + P     S+
Sbjct: 4   KKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDR--SL 61

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            T+  +MT+ P WA GL L A G+    Y+K
Sbjct: 62  DTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92


>gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 141

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252
           +   G  ID D +      IA     L++    L      +   T  L+  LF   G+  
Sbjct: 1   MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPV 59

Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
                  +  T + +L     +     +++     S       + L + V+S  GR+  +
Sbjct: 60  LQKTPKGAPSTNEEVLEELAYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTS 119

Query: 309 LQFYGASRTGRWSGCVFQPQNLP 331
                 + TGR S      QN+P
Sbjct: 120 YHQAV-TATGRLSSSDPNLQNIP 141


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/524 (14%), Positives = 141/524 (26%), Gaps = 115/524 (21%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS 97
           DE     D+     +   + +    + V  V HN   F+           +   +   T 
Sbjct: 28  DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 85

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           V AR         SL +    L                            Y     +  +
Sbjct: 86  VAARLLNPSERANSLDDWGKRLG--------------------------EYKGEFKDFSR 119

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVL 207
             +   EY ++DV  TR+L+ +L P         + E     +       G+ ++     
Sbjct: 120 FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKAR 179

Query: 208 KLQELIAQERKKLDEDIVKLTDG---------------------------------IIRS 234
            L+  + QE   ++ ++ ++                                     I +
Sbjct: 180 GLEAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFN 239

Query: 235 SRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA-- 288
                     L               S    +S+L+       AK L      +      
Sbjct: 240 PGSRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLKYP-EAKVLNRYLRITKLLGQV 298

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +   N   + V+    R+ G +   GA  TGR S        + +++             
Sbjct: 299 VDGENGWLKLVNEETSRVHGAVNTIGA-ATGRCSHFKPNMAQVDKKDLR----------- 346

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R C  A  G  LV  D  G+E R+LA   G+           +
Sbjct: 347 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 390

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFS 463
                   A       V   +R   K +  AL Y  G      +    A   G++L+   
Sbjct: 391 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 450

Query: 464 QNVKSTSTFEDWEQAE---SHHLWMQDQYPEFAVKDKLIGTACE 504
           + + + +  +  +  +        ++D+  +      L G    
Sbjct: 451 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRIY 494


>gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 626

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/569 (14%), Positives = 146/569 (25%), Gaps = 114/569 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  DIET                   I   +     +  V+ +   E       L+  + 
Sbjct: 2   LIFDIETNGLLDTTT----------QIHCMSILDTHNLEVQAYRPWEIKEGIQRLMHEIN 51

Query: 63  DETVMCVAHNS-LFERILFKKTLGIDIPSKR-----WICTSVLARTNGLPSSLKNACLAL 116
           ++      HN   F+    +K    +   ++      I T V+AR        ++     
Sbjct: 52  NDG-TICGHNIISFDIPAIEKLYPKEFHIQKEKHTHIIDTLVMARLLNSNIQEQDLIRYR 110

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFK 175
              E    +    +L A   +  I    Y        + + +   EY K+DV  T  L+K
Sbjct: 111 K-KELAGNLIGSHSLKAYGHRLGILKGTYAEDNEEAWEVYNEDMLEYNKQDVRVTYALYK 169

Query: 176 RLIPLSD-------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-- 226
                          E     L   + + G+  D+   LKL + + Q  +++D  I    
Sbjct: 170 SFQDRIKGMEQAILLEHKAQWLMTKMEENGFPFDIPDALKLVKTLRQRAEEIDTQISAVV 229

Query: 227 ------------------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMS----- 257
                                   +      +      +                     
Sbjct: 230 PKIPDKVFTPKRDNKRLGYKKGVPIQRYKPFNPNSRQQIEWIFRTHYNYTPDKADLYTEE 289

Query: 258 ------EGTLKSILSHSNITQLAKD---LILNRLASSGSAILKLN---TLSEAVSSDGRL 305
                 E T + I       Q AK    L   RL          +      + V SDG++
Sbjct: 290 GRLKIDESTFEYIEKDEKAPQGAKKIAPLFEERLMLCKRLGQLADGKQAWLKHVKSDGKI 349

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
            G +   G + TGR +        +P                              +  R
Sbjct: 350 HGRVNPNG-TVTGRATHSNPNVAQVP-----------------------HVGTPYGEECR 385

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
                  G      D  G+E R LA        +  +  G+  +   +     +      
Sbjct: 386 KLFNVPQGWTQAGIDACGLELRCLAHY------LSPYDKGKYAHEVVHGDIHTSNQKAAG 439

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              R + K    A  Y  G  +   +     +  ++          F+     +     +
Sbjct: 440 LATRNLAKTFIYAFLYGAGDLMIGEL-----VGGKEKEGKAIKKKFFKATPSIKLLKEDI 494

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH 514
           +           LI T     K  W+ K+
Sbjct: 495 EKA---------LIKTRIYNRKIQWKRKY 514


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/524 (14%), Positives = 141/524 (26%), Gaps = 115/524 (21%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS 97
           DE     D+     +   + +    + V  V HN   F+           +   +   T 
Sbjct: 15  DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 72

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           V AR         SL +    L                            Y     +  +
Sbjct: 73  VAARLLNPSERANSLDDWGKRLG--------------------------EYKGEFKDFSR 106

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVL 207
             +   EY ++DV  TR+L+ +L P         + E     +       G+ ++     
Sbjct: 107 FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKAR 166

Query: 208 KLQELIAQERKKLDEDIVKLTDG---------------------------------IIRS 234
            L+  + QE   ++ ++ ++                                     I +
Sbjct: 167 GLEAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFN 226

Query: 235 SRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA-- 288
                     L               S    +S+L+       AK L      +      
Sbjct: 227 PGSRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLKYP-EAKVLNRYLRITKLLGQV 285

Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +   N   + V+    R+ G +   GA  TGR S        + +++             
Sbjct: 286 VDGENGWLKLVNEETSRVHGAVNTIGA-ATGRCSHFKPNMAQVDKKDLR----------- 333

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R C  A  G  LV  D  G+E R+LA   G+           +
Sbjct: 334 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 377

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFS 463
                   A       V   +R   K +  AL Y  G      +    A   G++L+   
Sbjct: 378 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 437

Query: 464 QNVKSTSTFEDWEQAE---SHHLWMQDQYPEFAVKDKLIGTACE 504
           + + + +  +  +  +        ++D+  +      L G    
Sbjct: 438 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRIY 481


>gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper]
 gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper]
          Length = 617

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 177/699 (25%), Gaps = 192/699 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTE-QSAMPSDLLQY 60
           +  DIET     +             I     AWD  D   +       +     ++   
Sbjct: 57  IAFDIETPGLDNV-----------FTINCVTAAWDWPDGGTQTILLDPARDEEHWEVAVA 105

Query: 61  LRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGL----PSSLKNAC- 113
           L         HN  F+        G+  D   +R + T ++ R        P +L     
Sbjct: 106 LLHAARTVAFHNVPFDAPPL-YHAGLINDSTIRRIVDTLLITRFAVPDVMVPKNLTALSV 164

Query: 114 LALNFSEHL------TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
             L   +         K    K   A F    I SP Y         A        +   
Sbjct: 165 RHLGLDDDKGGLERAFKAAGYKTQQAGFEGMDITSPVYRYGAMADTVATLRVEPLMRAKA 224

Query: 168 E-------------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                          T+   + L+   +    + L    +   G  +D   + +  E + 
Sbjct: 225 LHWATDHPFATYGATTQAEAEELLATQETVHRVMLRRSAV---GLAVDRAYLDRYAEQVD 281

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSHSN--I 270
            +R     ++     G+   S +   L  YL     +           L++  +  +   
Sbjct: 282 IDRNLAIAELAAH--GLEGGSGKGAKLVEYLAERGELPANWPRTPTRKLRATKADLDGLD 339

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
             LA                 L  +    S  GR    +   GAS TGR +    + Q  
Sbjct: 340 HPLAAAQRKLAQIDKVM--GYLEKVDRQASVTGRCHPQVGVLGASATGRMAYGSPELQQF 397

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                    II  +G+ L   D + IE   +A
Sbjct: 398 PADA-------------------------------RAIITDDGQGLTSIDWSQIEPVTMA 426

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            +A +   +  F  GED+Y          PI + +   R + KV+ L   Y         
Sbjct: 427 LMAKDHEFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTMY--------- 468

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                GL +                               + A +      +   +++  
Sbjct: 469 -----GLGI------------------------------AKLARQIGHTEESAAQIRRQM 493

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
               +G  +  + +        +   +       +                         
Sbjct: 494 FEAMKGCERWMRKVQNVAETYGRVVTAGGRILPVDQG----------------------- 530

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV-- 628
                                 Y  K     +Q  + D+L   +    + G    L +  
Sbjct: 531 ----------------------YEYKAVNYAIQGSAYDVLAHSIVEMDRRGIGDHLQLAM 568

Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663
           HDE+V +T          +  +M   P     WA+ +P+
Sbjct: 569 HDELVVDT-----EVAEEVQQIMLTPPEFLITWAERVPV 602


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 31/162 (19%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112
            L   L DE+V+ VA N  ++ +L K+     I ++ +  T +++           +   
Sbjct: 14  RLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLEPAPARHGMDPL 70

Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L  +    K   G                        +        Y   D + T 
Sbjct: 71  SEKFLGHTPIPYKDVAGSG---------------KANVTFDLVDIDRATHYAAEDADVTL 115

Query: 172 ELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLD 204
            L+  L P             ER L  +   +  RG  +D  
Sbjct: 116 RLWLVLKPGCARGLTSVYERLERPLLPVLARMEARGITVDRQ 157


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 185/695 (26%), Gaps = 183/695 (26%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---DEPVKLW--DRTEQSAMPSDLL 58
           + +DIET                   I     AW+      V+    D +   A  + + 
Sbjct: 57  VAMDIETPGLDN-----------AFTINCVTMAWEMPTTGHVRTVILDPSRNRADHAIVR 105

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGL----PSSLKNAC 113
             +     +   HN+ F+          D P   + + T +++R        P +L    
Sbjct: 106 DMVEHAGRL-AFHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPKNLTALS 164

Query: 114 -LALNFSEHL------TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE--YCK 164
              L   +         K    K   A F    I SP Y         A          K
Sbjct: 165 VRHLGLDDDKGGLERAFKAAGYKTQAAGFEGMDITSPVYRYGAMADTVATLRLEPLMRAK 224

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELIAQE 216
               AT   F+     ++ E +  L  Q    R        G  +D   + +  E +  +
Sbjct: 225 ALHWATDHPFQTYGATTEAEAEQLLWTQETVHRVMLRRSAVGLAVDRAYLDRYAEQVDVD 284

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           R     ++     G+   S +   L  YL+    +        T K   +  ++  L   
Sbjct: 285 RNLAVAELAAH--GLEGGSGKAAKLVEYLYQRGELPEPWPRTPTKKLRATKDDLEGLDHP 342

Query: 277 LILNRLASSGSAI--LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           L   +   +        L  +    S  GR    +   GAS TGR +    + Q  P   
Sbjct: 343 LAAAQRKLATIEKVMGYLAKVDRQASVTGRCHPQVGVLGASATGRMAYGSPELQQFPADA 402

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                            II  +G+ L   D + IE   +A +A 
Sbjct: 403 -------------------------------RAIITDDGQGLTSIDWSQIEPVTMALMAK 431

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +  F  GED+Y          PI + +   R + KV+ L   Y             
Sbjct: 432 DHDFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTMY------------- 469

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            GL +                               + A +      +   +++      
Sbjct: 470 -GLGI------------------------------AKLARQIGHTEESAAQIRRQMFEAM 498

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +G  +  + +        +   +       +                             
Sbjct: 499 KGCERWMRKVQNVAETYGRVVTAGGRILPVDPG--------------------------- 531

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEI 632
                             Y  K     +Q  + D+L   +    + G    L +  HDE+
Sbjct: 532 ------------------YEYKAVNYAIQGSAYDVLANSIVEMDRRGISDHLQLAMHDEL 573

Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663
           V +T          +  +M   P     WA+ +P+
Sbjct: 574 VVDT-----EVAEEVQQIMLTPPEFLITWAERVPV 603


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 108/353 (30%), Gaps = 76/353 (21%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L  +   +     +++ + + K   L+    K+L+++      G          LR 
Sbjct: 18  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLIMSNNQLRE 76

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            LF    +                         L+  R +   + + K  + SEAV+  G
Sbjct: 77  ILFGKLKL------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 112

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
             +  +Q                P+N   +E     ++                      
Sbjct: 113 ISKHPIQITT-------------PKNFKGKEDKILTISP--------------------- 138

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPI 421
            R+  ++S G   + AD + IE R+LA ++G+   +K F   E    + T  ++  + P+
Sbjct: 139 -RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPV 197

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           ++V+   R   K +  A+ Y  G +          L +          S  + +++ +  
Sbjct: 198 EQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPVQEAAQFLESFLQKYKKIKDF 252

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
                 Q  +      ++G    L           +    + L          
Sbjct: 253 ARAAIAQCHQTGCVVSIMGRRRPL---------PRIHAHDQQLRAQAERQAVN 296


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 56/92 (60%)

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643
              ++R  +YGGKL ENIVQA++RD+    M    + G+ IV+ VHDEIV + P    F+
Sbjct: 8   DRLVVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFT 67

Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           V   C LM   P WA GLPL A+GYE   YRK
Sbjct: 68  VADACVLMATLPDWAAGLPLDADGYECDYYRK 99


>gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa]
          Length = 161

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 49/192 (25%), Gaps = 44/192 (22%)

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A    +   A +     +  ++ GV    +   +                      
Sbjct: 3   AFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVF---------- 52

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                            RRL   D+ G       A     R            +Q  + D
Sbjct: 53  ----------------GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAAD 87

Query: 609 ILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGL 661
           ++   M          + G   ++ VHDE+V E P      V   L  LM    +    +
Sbjct: 88  LIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVAT--LNV 145

Query: 662 PLKAEGYEAKRY 673
           PL AE      +
Sbjct: 146 PLVAEVGSGANW 157


>gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 388

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 107/360 (29%), Gaps = 46/360 (12%)

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA--- 393
            +++T   +          P   A   VR+C I   G   + ADL  I+ R++A I    
Sbjct: 12  RKLITSNEKVPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVK 71

Query: 394 -GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
            G++   + F +G D+Y       F  P ++V  ++     V     G+ G         
Sbjct: 72  YGDNSMRQIFVDGVDLYTKMAMMTFGLP-EQVCLDKAWYDPVSGQG-GFGGEPPA----- 124

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                          +        +     +        FA K  +      +  + +  
Sbjct: 125 ---------------TAYYPRKMMKTGQLAVSYDQSPRAFAKKMNVTEDVAHMFFENFDE 169

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV--MRRHKRDVHIVLPSSRRL-- 568
                  + KD  E              +R       V    +        L S R+   
Sbjct: 170 TFPSFKPMVKDYREMMKRDGYVETLFGRKRRFPDFNEVAAFVKRNEQRLYRLYSERKRLQ 229

Query: 569 VYSDVKGDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616
             ++ +       TA        +++      +       ++Q    DIL          
Sbjct: 230 NITNPRDADRKRLTAVQDEIDILSAKRGLVGYWIRAAFNAVIQGTGADILKLIGIRNAAV 289

Query: 617 ATKNGYDIVLTVHDEIVSETPDTP--YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674
             + G+++  ++HDEI +  P+      ++  +  +M K       +PL  +      + 
Sbjct: 290 CRERGWEMNASIHDEIKNSIPNDQFTAETIDLINEIMMKTVE--LSVPLVTDTVIEPCWM 347


>gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 687

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 79/510 (15%), Positives = 138/510 (27%), Gaps = 106/510 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  DIET            A  E             E  +            +LL+ L
Sbjct: 26  RILAFDIETNGLLMTVSRFHTAVCEDL--------VTGEVREYRPHEH-----HELLKDL 72

Query: 62  RDETVMCVAHN-SLFERILFKKTLGI-DIPSKRWICTSVLARTN---GLPSSLKNACL-A 115
            +  V+ VAHN   ++    KK     DI   + I T VL+R          +       
Sbjct: 73  YEADVL-VAHNGINYDVPALKKLFPFWDIQPTKVIDTLVLSRLLFADIKDRDMSGVRRWR 131

Query: 116 L---NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L              K+    +L A   +       Y        +  +    YC++DV 
Sbjct: 132 LREEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKGDYGEQEDAWAEFSEDMLIYCRQDVT 191

Query: 169 ATRELFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            T +L +RL              E ++  L       G++ D+    +L   +  +R+ +
Sbjct: 192 VTCKLIRRLMKEFPDASFKAMQLEHEIQWLMSQQERNGFKFDVAKAEQLYFKLLGDRETI 251

Query: 221 DEDI--------------------------------VKLTDGIIRSSRQTYALRMYLFLI 248
            + +                                      +  +          L   
Sbjct: 252 RQKLVDKFGTWYASNGVTTPKRSMNRMGMSYTAGAPYTKLKEVTFNPASRDHCAKVLQEA 311

Query: 249 TGI--DLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDG 303
             I  +  D ++    + +LSH  +   A+ L    + +                V+ +G
Sbjct: 312 GVIFTEFTDGNKPKIDEEVLSHIKLP-EAEMLNEFFMLNKRIGQIAEGNQAWLRLVTPEG 370

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
            + G++   GA  TGR          +P                                
Sbjct: 371 FIHGSINPNGA-VTGRALHSHPNIAQVPSG-----------------------RAPYGQE 406

Query: 364 VRSCIIASNGKKLVVADLAGIEARV-----LAWIAGEDWKIKAFAN-GEDIYVTTYAKAF 417
            R C    +G  L+ +D +G+E R        W  G   K+    +   +         +
Sbjct: 407 CRECFTVPDGWVLLGSDASGLELRCLGNRMFPWDKGAYNKVILEGDIHWENAQAAGFVDY 466

Query: 418 NTPIDKVSKEQRA---IGKVMELALGYQGG 444
               DK + +        K    A  Y GG
Sbjct: 467 GVIRDKHNPDHELRRGKAKTFIYAFLYGGG 496


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/634 (11%), Positives = 150/634 (23%), Gaps = 189/634 (29%)

Query: 114 LALNFSE--HLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             +  S+      +     LI        + +              +L   Y   D +  
Sbjct: 448 EYMGLSDYAKSYTLNTAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDVC 507

Query: 171 RELFKRLIPLSDGE-------------RDLWLLDQTINDRGYRIDLDLVLK--------- 208
           R +   +I     +               L      I   G   DLD + +         
Sbjct: 508 RRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESEM 567

Query: 209 -----------LQELIAQERKKLDEDIVKLTDGI--------------------IRSSRQ 237
                        +   + +  L +  ++  +                      + S   
Sbjct: 568 AKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPSS 627

Query: 238 TYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSNITQ 272
                  ++ I GI L                             +  +   L +  +  
Sbjct: 628 GDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELKD 687

Query: 273 LAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
             K+L+      +            L   ++   R          + T R S      QN
Sbjct: 688 DVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNPNLQN 747

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388
           LP                                ++   ++      L+ +D + +E R+
Sbjct: 748 LPAHT------------------SDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMRI 789

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +     +   +++F NGEDI+  T +  +N P+++V+KE+R   K +   L +      F
Sbjct: 790 IGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSF 849

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                                                         K+ +  +  E + +
Sbjct: 850 AG--------------------------------------------KNNMEVSEAEEIFE 865

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            +      V     ++ E              RR     +   ++ K +         R 
Sbjct: 866 KYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQSTDKKIKNE-------GLRQ 918

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGY 622
            +                              I+Q     +    +        +     
Sbjct: 919 SF----------------------------NTIIQGSGSFLTNMSLTYLDDFIQSRNLKS 950

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
            ++ TVHD I+ + P      +  +   +M   P
Sbjct: 951 KVIATVHDSILIDCPPEEAKIMAKVTIHIMENLP 984



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 54/211 (25%), Gaps = 36/211 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----------TEQSAMPS 55
           D+ET S +P  +             + + +W +                    +   +  
Sbjct: 220 DLETNSLKPDKEGSKP--------LVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-----NGLPSSLK 110
            L  +L  +  + VAHN  ++      T       +    T V               L 
Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFLMSTENFK-DFESIQDTKVGWYLAVTQEVKESLRLS 330

Query: 111 NACLA------LNFSEHLTKMEEGKALIARFCKGSID--SPPYDCTRANHVQAWQLFGEY 162
           +           +      K+     L+  F     +         +  +      + E+
Sbjct: 331 DLAYEVTDVGGYDKPLEDFKLWFVTKLLRFFSDKIKEIQKENKKIAKKEYDVKAPEYKEW 390

Query: 163 CKRD---VEATRELFKRLIPLSDGERDLWLL 190
            +          +  ++   +S+ E+    L
Sbjct: 391 LENKLNETVVELDDTEKKFRVSELEKKYIQL 421


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/456 (14%), Positives = 119/456 (26%), Gaps = 115/456 (25%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
            ++       ++     + V +     ++  +    T+    ++      +  +    ++
Sbjct: 635 WKKNKPEEQIIWSDYKTNKVALDYVNSQAKEAGDKDTEDLTKMLAKFSIVNKISSSFTDS 694

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L E      +L G     G + T R S      QNLP                   E   
Sbjct: 695 LREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLP------------------AEKSN 735

Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
             L      ++   ++     KL+  D + +E  +LA +  ED    AF  G+DI+ +  
Sbjct: 736 THLFNYKYPIKRMFVSRFPNGKLINLDYSSLEFHILALVTKEDSMTGAFLEGKDIHTSNA 795

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           A  ++ P + V  EQR   K +   L Y  G                             
Sbjct: 796 ALMYDVPYEDVIVEQRKAAKSIGFGLIYGKGDA--------------------------- 828

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                              A    L     +     +      V        +       
Sbjct: 829 -----------------ALAEDLGLSLEEAQEKINTFFKSKPRVKAFIDKAHKFAENNGY 871

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
                  RR                             ++ G  S      S+  R+   
Sbjct: 872 VTTLNGFRR-----------------------------NLGGAFSTDYGKRSKAQRQS-- 900

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTL 647
                  I+Q     +    +    +          I+ TVHD I+ + P+     V TL
Sbjct: 901 ----VNTIIQGSGAILTNTAVIILNELLAKSKFKSVIIATVHDSILIDCPEEEIDKVSTL 956

Query: 648 C-SLMTKN-PSWAKG--------LPLKAEGYEAKRY 673
              +M      W            P++AE    K Y
Sbjct: 957 ALYVMEHLDYPWLFTNYKGKRIRYPIEAEVDIGKTY 992


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 112/362 (30%), Gaps = 53/362 (14%)

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
             E   +++T   +A         P   A   VR+C I   G   V ADL  IE R++A 
Sbjct: 7   YHEIVRKLITSNEKAPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFVGADLGQIEPRIMAH 66

Query: 392 IA----GEDWKIKAFANGEDIYVTTYAKAFNTPIDKV---------SKEQRAIGKVMELA 438
           I     G++   + F +G D+Y T   + F                + E R + K  +LA
Sbjct: 67  IMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLA 126

Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
           + Y    K F        +++ +   ++   +    +    +    ++++       + L
Sbjct: 127 VSYDQSPKSF-----AKKMNVTEEVAHMFFENFDRTYPSFRTMVKDIREEMKSCGYVETL 181

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
            G                     +  ++       E   I         R        D+
Sbjct: 182 FGRKRRFP------------DFNEVASQTAR---NEQKLIRLYTERKRLRNKKNPTAADM 226

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616
                  R     D     S         +R           ++Q    DIL        
Sbjct: 227 R------RLTAVQDEIDILSEKRGLVGYWLRAA------FNAVIQGTGADILKLIGIRNA 274

Query: 617 --ATKNGYDIVLTVHDEIVSETPDTPYFS--VGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672
               + G+++  ++HDEI +  P+       +  +  +MT+       +PL  +     R
Sbjct: 275 EICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQTVE--LSVPLITDTVIEPR 332

Query: 673 YR 674
           + 
Sbjct: 333 WM 334


>gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
 gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
          Length = 874

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 77/647 (11%), Positives = 161/647 (24%), Gaps = 167/647 (25%)

Query: 56  DLLQYLRDETVMCV------AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
            L + L++ T + V        N            G+ +   +     +        + L
Sbjct: 34  QLSKILQEPTTVKVFADAVVGQN-------LLNQNGLKV-GGQIFDVKLADSLL--TAGL 83

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +         ++       + L     +                 A +   E  K +  A
Sbjct: 84  EV--------DNSIASISSRHLGKFSLESLPQDLLKLRDVLRVKLASEELIEVAKIEFNA 135

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           T+                      ++  G R+D   +   Q+ + +ER+ L+  +     
Sbjct: 136 TKA------------------TAQMSQNGVRLDTAWLKDKQQELEEERRGLESQVKDWLG 177

Query: 230 GIIRSSRQTYALRMY-------------LFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             +        L                 F   G+ L   ++  ++S+ +      +   
Sbjct: 178 EKLPDETDKIQLSDLTSTKKADKTQTLECFNRAGVPLESFNKNHIQSLTTE---HPILNQ 234

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
               R  +       +  L   V  + ++  T     A  TGR S      QN+P     
Sbjct: 235 FQRMRTVNDLIGNKGIQGLLNVVDDENKVYPTWHQNSA-ATGRMSATKPAIQNIP----- 288

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADLAGIEARVLAWI 392
                                      ++  II        +  V AD +  E R+LA +
Sbjct: 289 -------------------------ASLKRAIIPEQQGEEKQVFVRADYSQQELRILAQL 323

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
            G+     A+  G D +  T +     P ++++ E+R   K +     Y    +  ++ A
Sbjct: 324 TGDKTLTSAYQEGRDAHRLTASLMTGKPENQITSEERQRAKPVNFGKIYGQSPQGLQSYA 383

Query: 453 S-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
               G++                                +                    
Sbjct: 384 KVSYGVEFSIEDAMKF-------------------QAAMDKG------------------ 406

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             +  V +  + + + F                     +     +         R+  + 
Sbjct: 407 --YPSVARHEQQVRQDFKHQ--------------WNAALSSEDNQYPQTRTLLGRKREWQ 450

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC----EGMKNATKNGYDIVLT 627
             +     +N                    +Q    D+             + G  I L 
Sbjct: 451 PQQHQYPPINE--------------ALNAPIQGSGADMSKLALALLPDALQETGAKITLI 496

Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKN-PSWAKGLPLKAEGYEAKR 672
            HD+IV    ++    VG +   +M          +P  AE      
Sbjct: 497 RHDKIVLTAQESQAEKVGKILESVMKVAGLRITPDIPTVAEVSICDN 543


>gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 103

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M ++ ID++T S   + K G + YAE     I L   + D  PV ++D      +P ++L
Sbjct: 2  MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61

Query: 59 QYLRDETVMCVAHNSLFERILFKKTL 84
            L DE V   A N+ FER+     L
Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWL 87


>gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 676

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 87/690 (12%), Positives = 178/690 (25%), Gaps = 191/690 (27%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--A 100
            + +    S  P   LQ L D  V  V H++  +      +LG++   + W  T +   A
Sbjct: 108 FVINVASPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-EPRYWWDTCIAEKA 163

Query: 101 RTNGLP----------------------------SSLKNACLALNFSEH---LTKMEEGK 129
           R  G                                L +     N         K+  G 
Sbjct: 164 RYLGQHNNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLMGS 223

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLW 188
                 C    +             +  +   Y  +        + + L      E    
Sbjct: 224 EQ---DCPSFSEFQIER----TSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWV 273

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           + +  I   G+++  D   ++ E   ++     +++ +L      +    +  +  LF  
Sbjct: 274 VTNAAIEWNGFKVCRDKCSQILEACERKLNLYSQELAQLGM---TNPNSQHQKQA-LFAS 329

Query: 249 TGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL-SEAVSSDGR 304
            G+             + +LS +     A   +         ++ K   L    V SDGR
Sbjct: 330 LGLLHHFKDGEDYSFQREMLSKNYALHPAVAFLAKYTHID--SVYKDVILQPGIVGSDGR 387

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +    +   A  TGR +        LP                                +
Sbjct: 388 VHSEQKQLTA-ATGRQATVAPNILGLP------------------------------AVL 416

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF----------ANGEDIYVTTYA 414
           R  ++A +G  +   DLA IE  + A + G+   +K +                 + +  
Sbjct: 417 RPLVVAQDGYAIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCDELESEY 476

Query: 415 KAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +  ++    +   E+RAI K   L L Y        +      L+               
Sbjct: 477 RICDSSTFKEKYPEKRAIMKQCTLGLIYG-----ITSFGIAKKLN--------------- 516

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                   +       +   + +    + +  + + +  A    
Sbjct: 517 ------------------------ISVNKATELMDKFLSMFPELQKAIEKMPQYGALRGH 552

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
              +    R                       R+L       + +++             
Sbjct: 553 VSTATGLHRY----------------------RQLDAKRGHTEKNWM------------- 577

Query: 594 GGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-C 648
                   VQ  +  +         +        +++ +HD  V E P      V  L  
Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYDAKLIVAMHDAFVFEVPKEHLSEVSELTA 633

Query: 649 SLMTKNP-SWAKGLPLKAEGYEA--KRYRK 675
            LMT+        L ++A+   +    + K
Sbjct: 634 QLMTQVVQEMYPQLKIRADINISQPDCWTK 663


>gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120]
 gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120]
          Length = 143

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 44/176 (25%)

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                +   +  V +  +D+             +  RR            +         
Sbjct: 1   DFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-------- 52

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618
                      + + +NT                   +Q  + DI+ + M          
Sbjct: 53  ---------FAERTAMNT------------------PIQGSAADIIKKAMILMSERLKSE 85

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673
           K    ++L VHDE++ E P+     +  +   +M         +PLK +      +
Sbjct: 86  KLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 139



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 3/69 (4%), Positives = 14/69 (20%), Gaps = 9/69 (13%)

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                F  +   + +   +     E    + ++           R     ++    ++  
Sbjct: 2   FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHR---------RRYIPEIVSRNFNVRG 52

Query: 527 GFACVVQEG 535
                    
Sbjct: 53  FAERTAMNT 61


>gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5]
          Length = 600

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 189/697 (27%), Gaps = 198/697 (28%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----LWDRTEQSAMPSDLLQYLR 62
           DIET               +   I    ++W     +    L D   +    ++  +  +
Sbjct: 40  DIET------------KGIDIFTIRCITFSWHGSDGRTHGILLDMGRRPEDLAEAKRIAQ 87

Query: 63  DETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGL----PSSLKNACLAL 116
               + V HNS F+ +      G+       R   T VL+R        P  L+   + +
Sbjct: 88  RAEHL-VFHNSPFDVVPLV-HFGVMGREEVFRVWDTIVLSRMAFPDVMVPKKLEAMAVKM 145

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL--- 173
             S+   ++ +G  ++ +          Y    A+       +      D   T  L   
Sbjct: 146 RVSD---ELPDGLKMMIKASGLKSKDGWY----AHGDIDRPAYRHGAIADTVVTLRLLPV 198

Query: 174 -----FKRLIPLS----------------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                 ++L                    D E  +  +    + RG R+DLD +   ++ 
Sbjct: 199 LIDAIHRKLTDHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDLDYMHTYRDS 258

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSHSNI 270
           +A +  + + ++                L   L  + G+       + G L S       
Sbjct: 259 VADKVARAELELKNYGVD----PGNGAQLVAKLDEVGGLPENWPRTATGKLASNKDAMEK 314

Query: 271 TQLAKDLILNRLASSGSAI-LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
                  + +R+ +  + I   L+ ++      GR   ++   GAS TGR S      Q 
Sbjct: 315 LGDHPLALAHRIYADETKIGQYLDAVASRAEVTGRCHPSVAILGASATGRTSYSDPPLQQ 374

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
                R                                ++  +G+ L+  D + IE  V+
Sbjct: 375 FSADARP-------------------------------VLVDDGQGLMSVDWSAIEPVVV 403

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A +AG+   +  F  G D+Y          PI + +   R   KV+ L   Y        
Sbjct: 404 ANMAGDQEFLAPFVAGADLYE---------PIQRAAGIDRKRAKVVLLGTLY-------- 446

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                                                +   + A   K        +++ 
Sbjct: 447 ------------------------------------GEGKGKMAADLKCSYEQAVQIQRG 470

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
             +    V +  + +    A                              IV    R L 
Sbjct: 471 MFSAMPKVERFLETVKSVAAQ--------------------------FGIIVTADGRILD 504

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLT 627
                G+ +                 K T  I Q  +  +  + +      G   +I L 
Sbjct: 505 VPKFNGEVAAY---------------KATNYITQGTAYSVAADTIVRLHDAGLSDEIHLF 549

Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKG 660
           +HDE            V  +   M   P     W KG
Sbjct: 550 MHDE--FVVSRDAAPDVEAI---MQTPPEFMVRWTKG 581


>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 478

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 26/137 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L DE V  V  N  ++R + +   GI++    +  T + +           + 
Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459

Query: 111 NACLA-LNFSEHLTKME 126
           +     L       +  
Sbjct: 460 SLSDRWLKHKTITFEDI 476


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 80/337 (23%), Gaps = 81/337 (24%)

Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                 +  L        +GR+  +L     + TGR S      QN P  E+        
Sbjct: 287 KLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY----- 339

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403
                               +R   +A+ G  L+VAD   +E R+LA +      ++AF 
Sbjct: 340 -------------------KIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFK 380

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            G D +  T    +    D V +                   KV        G D     
Sbjct: 381 AGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQPGQDKPPVP 422

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
               +        +  +  +         +   K+         K W    + V    K 
Sbjct: 423 LLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVSAWQKK 482

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                    +    +                           R   + ++          
Sbjct: 483 QKAFALEKCEVYTLL--------------------------GRSRQFPNM---THAGPGQ 513

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620
              + R            VQ  + D+    M    +N
Sbjct: 514 KGHVERAAINAP------VQGSAADVAMCAMLEIERN 544


>gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYG KL ENIVQA SRD+L E M+     G  +V+ +HDE V + P     S+
Sbjct: 4   KKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNR--SL 61

Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
            T+  LMTK P WA GL L A G+ +  Y+K
Sbjct: 62  DTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 111/660 (16%), Positives = 181/660 (27%), Gaps = 159/660 (24%)

Query: 4    LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
            L +D+ET        +G   YA    +               D        + +      
Sbjct: 999  LTVDVETTGYP----LGHRDYA----LRTIQL---GNDAFAIDFDAADPEQAQVAGRHVG 1047

Query: 64   ETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGLPS-----SLKNAC-LA 115
               M  AH++  + I       ID+     R   T + A+     S      LK      
Sbjct: 1048 AAAMLHAHSATADLIPLAHAGLIDLDDAWSRMHDTVIPAKLADPASTGSDPGLKKLAGAV 1107

Query: 116  LNFSEHLTKMEEGKALI----ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
            L  +   T  EEG+  +        +    +P      A    A +    Y   DV    
Sbjct: 1108 LGDAAVSTAAEEGRKALFKAGKWLTEVKSTTPISRSGWAQVNPACETMIRYAASDVIDDA 1167

Query: 172  ELFKRLIPLSDGERDLWLLDQTIN----DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             L  RL PL     +   L Q +     DRG R+D DLV +L            E I   
Sbjct: 1168 ALALRLPPLPPELLERERLAQRMTARVADRGLRLDADLVERLHAEQTAALTAASEHIRAF 1227

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILN 280
                + +      +   L    G  L          ++G L  + +            L+
Sbjct: 1228 G---VDNPGSDQQVAAAL-ERLGAPLPRTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLD 1283

Query: 281  RLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               +     L L    + V + DGR R T  +  A+ TGR S      Q +PR+      
Sbjct: 1284 YQTAENRLGLFLEPYRQLVTNGDGRARPT-IYTLAADTGRMSCVRPNLQQVPREGG---- 1338

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                     R+CI A  G  L+ AD +G+E RV A ++ +   +
Sbjct: 1339 ------------------------FRACITADPGHVLISADFSGVELRVAAALSQDQNLM 1374

Query: 400  KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
               A+ +       A+          K +R                   K      G  L
Sbjct: 1375 AIVADPDRDIHREIAQL--VWGPDAGKPERYQA--------------KRKVFGRLYGSGL 1418

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                 +                                +     + + +A      G+  
Sbjct: 1419 NGLITSDPP-----------------------------VSEPIAKAIIEAMDLMTPGLSS 1449

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              + + +G                                    S R +     +G    
Sbjct: 1450 WSRMVADGV-------------------------DAGRTEFQAYSGRTIYMPTDRG---- 1480

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN--ATKNGYDIVLTVHDEIVSETP 637
                         Y G      +Q  +R++L + +     T+ G  ++L VHDE+V   P
Sbjct: 1481 -------------YAGP--NYCIQGTARELLIDALVRWSGTRWGNAVLLPVHDELVVHVP 1525


>gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 676

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 92/690 (13%), Positives = 178/690 (25%), Gaps = 191/690 (27%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--A 100
            + +    S  P   LQ L D  V  V H++  +      +LG++  S+ W  T +   A
Sbjct: 108 FVINVANPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-ESRYWWDTCIAEKA 163

Query: 101 RTNGLP----------------------------SSLKNACLALNFS---EHLTKMEEGK 129
           R  G                                L +     N         K+  G 
Sbjct: 164 RYLGQHNNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLMGS 223

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLW 188
                 C                  +  +   Y  +        + + L      E    
Sbjct: 224 EQ---DCPSFSALQI----EQTSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWV 273

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           + +  I   G+++  D   ++ E   ++     + + +L      +    +  +  LF  
Sbjct: 274 VTNAAIEWNGFKVCRDKCRQILEACERKLSLYSQGLAQLGM---TNPNSQHQ-KQVLFAS 329

Query: 249 TGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL-SEAVSSDGR 304
            G+             + +LS +     A   +         ++ K   L    V SDGR
Sbjct: 330 LGLLHHFKDGDDYSFQREMLSKNYALHPAVAFLAKYTHID--SVYKDVILQPGIVGSDGR 387

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           +    +   A  TGR +        LP                                +
Sbjct: 388 VHSEQKQLTA-ATGRQATVAPNILGLP------------------------------AVL 416

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-----------DIYVTTY 413
           R  ++A +G  +   DLA IE  + A + G+   +K +  G+           +     Y
Sbjct: 417 RPLVVAQDGYVIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCEELEPEY 476

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +   +    +   E+RAI K   L L Y        +      L+               
Sbjct: 477 STCDSAVFKEKYPEKRAIMKQCTLGLIYG-----ITSFGIAKKLN--------------- 516

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                   +       +   + +    + +    + +  A    
Sbjct: 517 ------------------------ISVNKATELMDKFLSMFPELQKAIDKMPQYGALRGH 552

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
              +    R                       R+L       + +++             
Sbjct: 553 VSTATGLHRY----------------------RQLDAKRGHTEKNWM------------- 577

Query: 594 GGKLTENIVQAISRDILCEGMKNATK--NGYDIVLTV--HDEIVSETPDTPYFSVGTL-C 648
                   VQ  +  +         +    Y+ +L V  HD  V E P      V  L  
Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYNAILIVAMHDAFVFEAPKECLNEVSELTA 633

Query: 649 SLMTKNP-SWAKGLPLKAEGYEA--KRYRK 675
            +MT+        L ++A+   +    + K
Sbjct: 634 QIMTQVVQEMYPQLKIRADINISQPDCWTK 663


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 169/706 (23%), Gaps = 188/706 (26%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPV----KLWDRTEQSAMPSDLLQYLRDETVMCVA 70
            +   G+        I     AW          L D     A  +         + + V 
Sbjct: 46  DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWPAHRAAARDVFARASKL-VF 101

Query: 71  HNSLFERILFKKTLGIDI-PSKRWICTSVLARTN-----GLPS---SLKNACLAL----- 116
           HN+ F+         ID    ++   T +LAR       G P    +L+   + L     
Sbjct: 102 HNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGLVD 161

Query: 117 --NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                E   K   G   I    +      P     A       L  E   R         
Sbjct: 162 VAGGMERAFK-AAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTTS 220

Query: 175 KRLIPLSDG-ERDLWLLDQTIND----------RGYRIDLDLVLKLQELIAQERKKLDED 223
                     E +   + +              RG  +D D + + +E   +  K+L+  
Sbjct: 221 HPFAEFGATTEAEALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYRE--REHDKRLEHA 278

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLI 278
                  +   + +  AL  +L     +          +    K  L   +    A    
Sbjct: 279 AFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVAAAQRA 338

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
           L +          L  +S   +  GR    +   GAS TGR S    + Q  P+  R   
Sbjct: 339 LAQSDKVL---GYLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDARP-- 393

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                        II  +G+ L   D A IE   +A +AG+   
Sbjct: 394 -----------------------------IIVDDGQGLTSVDWAQIEPVTMALMAGDREF 424

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
           +  F   +             PI +     R + KV+ LA                    
Sbjct: 425 LAPFFENDADLYE--------PIMRACGIDRPMAKVILLATM------------------ 458

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
                                             A +      +   +++   A      
Sbjct: 459 --------------------------YGQGARSMARRIGHTEESAAQIRRQMLAAMPASR 492

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
                +                                   IV    R L          
Sbjct: 493 DFMAKVESIAITHG--------------------------RIVTGGGRILPVDQQGS--- 523

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEIVSET 636
                            +    I Q  + D+L   +    + G    + +  HDE+V +T
Sbjct: 524 ----------------YRAVNYICQGSAYDVLAHTIVRLDEAGLSGHVQLAMHDELVVDT 567

Query: 637 PDTPYFSVGTLCSLMTKNPS----WAK--GLPLKAE-GYEAKRYRK 675
                     +  +M   P     WAK     L+ +      R+ K
Sbjct: 568 -----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 608


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 96/730 (13%), Positives = 185/730 (25%), Gaps = 113/730 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58
           M  L  DIET               ++     C++  D      K +   +      DL 
Sbjct: 1   MKLLISDIETNGLLDT--------VDKFH---CSWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111
           +    E  + V HN   ++    KK      G  ++IP +  + T V++R          
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLLHSNLK-DT 107

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       K+    +L A   +       Y    A  ++  +   +YCK+DV+ T 
Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTL 167

Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +LF++ +  +                E +   L       GY  D     +L   +A  R
Sbjct: 168 KLFEKFMSDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
            ++  ++ +                  +    L  Y  +             + TL   L
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              +        +     SS + I+K+      V +D    G       + +      + 
Sbjct: 288 YLKDAPFTPIQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLV 346

Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             + LP+ E   E ++ Q +         A         +    +  NG     A  +  
Sbjct: 347 PEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443
               +  I                           P  +V  +       +EL  LG+  
Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHRDYHTGKPWIQVGVD----ASGLELRCLGHFM 458

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                    +            + +     D  +   +         +        G   
Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518

Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           +     + K +      +  L + + +         GG+   +                 
Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616
            I     R++                                ++Q+    I  + +    
Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604

Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663
                 GY          +  VHDE             +V      M +    W    PL
Sbjct: 605 KGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664

Query: 664 KAEGYEAKRY 673
             EG     +
Sbjct: 665 DTEGKIGANW 674


>gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 166

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 26/144 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A D+                       +
Sbjct: 35  FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 84

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
              L   L D+    V  N  ++  +  +  GI++   ++  T + +           + 
Sbjct: 85  LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 142

Query: 111 NAC-LALNFSEHLTKMEEGKALIA 133
           +     L  S    +   GK    
Sbjct: 143 SLALRFLQHSCISFEQIAGKGKTN 166


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 21/143 (14%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNF 118
           D     V  N  ++  +  +  GI++    +  T + +           + +     L++
Sbjct: 1   DPEQKKVGQNLKYDMSVLARY-GIELRGIAF-DTMLESYVLDSTASRHDMDSLAKKYLHY 58

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                +   GK                           +    Y   D + T  L + L 
Sbjct: 59  DTIHFEDVAGKGKKQL---------------TFDQIPLESAAPYAAEDADITLRLHQTLW 103

Query: 179 PLSDGERDLWLLDQTINDRGYRI 201
           P    E  L  L   +      +
Sbjct: 104 PRLQAEPTLASLTTDLEVPLVPV 126


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 171/710 (24%), Gaps = 196/710 (27%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDR------TEQSAMPSDLLQYLRDETV 66
            +   G+        I     AW   D  ++            + A      +       
Sbjct: 37  DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWPAHRQAARDVFARAC----- 88

Query: 67  MCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTN-----GLPS---SLKNACLAL- 116
             V HN+ F+         ID    ++   T +LAR       G P    +L+   + L 
Sbjct: 89  KLVFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLL 148

Query: 117 ------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                    E   K   G   I    +      P     A       L  E   R     
Sbjct: 149 GLVDVAGGMERAFK-AAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVE 207

Query: 171 RELFKRLIPLSDG-ERDLWLLDQTIND----------RGYRIDLDLVLKLQELIAQERKK 219
                         E +   + +              RG  +D D + + +E   +  K+
Sbjct: 208 WTTSHPFAEFGATTEAEALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYRE--REHDKR 265

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLA 274
           L+         +   + +  AL  +L     +          +    K  L   +    A
Sbjct: 266 LEHAAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVAA 325

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
                  LA S   +  L  ++   +  GR    +   GAS TGR S    + Q  P+  
Sbjct: 326 AQ---RALAVSDKVLGYLEKVARQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDA 382

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
           R                                II  +G+ L   D A IE   +A +AG
Sbjct: 383 RP-------------------------------IIVDDGQGLTSVDWAQIEPVTMALMAG 411

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   +  F   +             PI +     R + KV+ LA                
Sbjct: 412 DREFLAPFFEKDADLYE--------PIMRACGIDRPMAKVILLATM-------------- 449

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                                 A +      +   +++   A  
Sbjct: 450 ------------------------------YGQGARSMARRIGHTEESAAQIRRQMLAAM 479

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                    +                                   IV    R L      
Sbjct: 480 PASRDFMAKVESIAITHG--------------------------RIVTGGGRILPVDQQG 513

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEI 632
                                +    I Q  + D+L   +    + G    + +  HDE+
Sbjct: 514 S-------------------YRAVNYICQGSAYDVLAHTIVRLDEVGLSGHVQLAMHDEL 554

Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WAK--GLPLKAE-GYEAKRYRK 675
           V +T          +  +M   P     WAK     L+ +      R+ K
Sbjct: 555 VVDT-----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 599


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 99/730 (13%), Positives = 185/730 (25%), Gaps = 113/730 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58
           M  L  DIET               ++     CA+  D      K +   +      DL 
Sbjct: 1   MKLLLSDIETNGLLDT--------VDKFH---CAWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111
           +    E  + V HN   ++    KK      G  ++IP K  + T V++R          
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLK-DT 107

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       K+    +L A   +       Y    A  V+  +   +YCK+DV+ T 
Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQVTL 167

Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +LF++ +  +                E +   L       GY  D     +L   +A  R
Sbjct: 168 KLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
            ++  ++ +                  +    L  Y  +             + TL   L
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              +        +     SS + I+K+      V +D    G       + +      + 
Sbjct: 288 YLKDAPFTPVQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLV 346

Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             + LP+ E   E ++ Q +         A         +    +  NG     A  +  
Sbjct: 347 PEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443
               +  I                           P  +V  +       +EL  LG+  
Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHRDYHTGKPWIQVGVD----ASGLELRCLGHFM 458

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                    +            + +     D  +   +         +        G   
Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518

Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           +     + K +      +  L + + +         GG+   +                 
Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616
            I     R++                                ++Q+    I  + +    
Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604

Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663
                 GY          +  VHDE             +V      M +    W    PL
Sbjct: 605 KGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664

Query: 664 KAEGYEAKRY 673
             EG     +
Sbjct: 665 DTEGKIGANW 674


>gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A]
          Length = 678

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 99/730 (13%), Positives = 185/730 (25%), Gaps = 113/730 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58
           M  L  DIET               ++     CA+  D      K +   +      DL 
Sbjct: 1   MKLLLSDIETNGLLDT--------VDKFH---CAWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111
           +    E  + V HN   ++    KK      G  ++IP K  + T V++R          
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLK-DT 107

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       K+    +L A   +       Y    A  V+  +   +YCK+DV+ T 
Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQITL 167

Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +LF++ +  +                E +   L       GY  D     +L   +A  R
Sbjct: 168 KLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
            ++  ++ +                  +    L  Y  +             + TL   L
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              +        +     SS + I+K+      V +D    G       + +      + 
Sbjct: 288 YLKDAPFTPVQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLV 346

Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             + LP+ E   E ++ Q +         A         +    +  NG     A  +  
Sbjct: 347 PEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443
               +  I                           P  +V  +       +EL  LG+  
Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHRDYHTGKPWIQVGVD----ASGLELRCLGHFM 458

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                    +            + +     D  +   +         +        G   
Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518

Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           +     + K +      +  L + + +         GG+   +                 
Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616
            I     R++                                ++Q+    I  + +    
Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604

Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663
                 GY          +  VHDE             +V      M +    W    PL
Sbjct: 605 KGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664

Query: 664 KAEGYEAKRY 673
             EG     +
Sbjct: 665 DTEGKIGANW 674


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 125/305 (40%), Gaps = 28/305 (9%)

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
            DM + T++  L    + +  ++L+  R  +S ++  K   L    S DGRLRGTLQF G
Sbjct: 14  PDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQFNG 73

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIA 370
           ASRTGRW+G +FQP NLPR   S+ ++   I A+  G       D + L S  +RSC+IA
Sbjct: 74  ASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIA 133

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
              KKLVVADL+ IE RVLAW+AGE  K++AF + +                  S E   
Sbjct: 134 PTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQ--------GVDGTWHSGE--- 182

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
                  A+ +        T+  +   +  +   ++   +    +  A      +  Q  
Sbjct: 183 -------AITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQ---AVTKQQR 232

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
           +     +L       V                DL              +A R     +L+
Sbjct: 233 QIGKVQELALGYGGGVGAFAAFA----AMYHIDLEAMAEQAALPPLLDTAARPFPHMKLL 288

Query: 551 MRRHK 555
            R   
Sbjct: 289 RRASN 293


>gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi
           strain CL Brener]
 gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 69/572 (12%), Positives = 144/572 (25%), Gaps = 143/572 (25%)

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           A+            AT  +F  L  +   E  +  L + ++  G  ++ +++  +   + 
Sbjct: 376 AYYEAYLQSVESSGATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLE 435

Query: 215 QERKKLDED----IVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILS 266
           Q+ K L E     +  +      S          L        G      ++G ++  + 
Sbjct: 436 QQIKALIEKGNVALRAMATASNESIDMETVDAWNLIKTLQSQFGGPW-TFAKGNVEEQMQ 494

Query: 267 HSNITQLAKD------------LILNRLASSGSA---ILKLNTLS--------EAVSSDG 303
                   K              +  R     S      K  ++         E  S++G
Sbjct: 495 QIGAYLDEKQSCADSNVARIWLALHERREFKRSLMEGFTKGASMQARLIAVPEEMASTEG 554

Query: 304 RLRGTLQFYGA----------------SRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                    GA                + T R        Q + +            +  
Sbjct: 555 GGHSNPHHVGAQYRLFFSVHAKWSVHHATTSRLFCSRPCLQTVAKNPP-------ISRTA 607

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                           +R       G  LV  D   IE RV+A ++G+   ++    G D
Sbjct: 608 PSSSPPVTIFTNPEWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSD 667

Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
           +      +    P    V+   R   KV+   L Y  G +           +    ++  
Sbjct: 668 VLAEMALRVMQLPRLADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSAEQP 727

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
             +                                      +++   +  V      L  
Sbjct: 728 PLS---------------------------------ARQFLRSFNQCYPAVQGF---LRS 751

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                  E    +   + ++        ++ + + L                        
Sbjct: 752 TRLRAFHEKRCTTLNGLRDLSGEPDGNRRKQMAVAL------------------------ 787

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI-----------VLTVHDEIVSE 635
                          +Q  +  IL   M    +  +++           VL+VHDE+V  
Sbjct: 788 --------------AIQGGAAVILHHAMVEVHEKRHELLPFLPAAAVALVLSVHDELVYA 833

Query: 636 TPDTPYFSVG-TLCSLMT-KNPSWAKGLPLKA 665
            PD+    V   +  ++  +  + +  +PL  
Sbjct: 834 VPDSAVSIVAPKIKQILEQQAAALSLSVPLPV 865


>gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM]
          Length = 396

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 112/464 (24%), Gaps = 127/464 (27%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T VL+R          SL+     L F                                
Sbjct: 1   DTLVLSRLYNPQMEGGHSLRAWGERLGF--------------------------RKGDHD 34

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRID 202
           +         EYC+RD++ T +L+  L    +         E ++  +       G+++D
Sbjct: 35  DWSTLSDEVIEYCERDLDVTAKLYTELTEKLEEFQGESIELEHEVQRIITEQEKTGWKLD 94

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTD--------------------------------- 229
           +     +Q  + Q   +++ ++ K                                    
Sbjct: 95  VKRAFDIQAKLKQRSMEVEREVHKTFTPLPVFDKEVTPKYNKDGSLSVVGLKFLGDRYTD 154

Query: 230 ---------GIIRSSRQTYALRMYLFLITGIDLV----DMSEGTLKSILSHSNITQLAKD 276
                        +      +  +L    G               + +LS  +I +    
Sbjct: 155 VAGPFSRVSFPEFNLGSRQQIARHL-QFFGWKPKLFTEKGQAIVDEGVLSRVDIPE--AK 211

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
           LI   L        ++ +  EAV  DGR+ G +   GA  TGR +        +P     
Sbjct: 212 LIAEYLLIQKR-TAQVQSWIEAVEEDGRVHGRVNPIGA-VTGRMTHSSPNMAQVP----- 264

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                       R C     G +LV  D AG+E R+LA    ++
Sbjct: 265 ------------------ASYSPYGTECRECWTVPKGYRLVGIDAAGLELRMLAHYMNDE 306

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                          T      T         R + K    A  Y  G      +     
Sbjct: 307 E---------YTNEVTNGDVHTTNQKNAGLATRDLAKTFIYAFLYGAGDAKIGAI----- 352

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           +   +            +          +            L G
Sbjct: 353 VGGSRRDGAELKEKFLNNTPPLRHLRERVAKSAKR-GYLKGLDG 395


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 83/506 (16%), Positives = 143/506 (28%), Gaps = 136/506 (26%)

Query: 158 LFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA-- 214
           L   Y ++ V         R+  L+  E    L+   +   G     D   KL + +   
Sbjct: 141 LLAVYAEQLVRTEAAEHPDRMRLLTTAESAGMLIAAEMRRAGVPWSADRHRKLLDELLGE 200

Query: 215 --------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
                   Q   +L E++ +     +R       ++   F   GI L       L+ I  
Sbjct: 201 RYPGGLEPQRLVELAEEVSRAFGTRVRPDLPAEVVKA--FGRAGITLGSTRAWELERI-- 256

Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326
                  A + +L                 ++   DGR R      G + +GRW+     
Sbjct: 257 ----DHPAVEPLLRYKKLYRLHTAHGWAWLQSWVRDGRFRPEY-LPGGTVSGRWTTNGGG 311

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
              +P+                               VR  ++A  G +LVVAD   +E 
Sbjct: 312 ALQIPK------------------------------VVRRAVVADPGWRLVVADADQMEP 341

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           RVLA I+ +   ++   +G D+Y T          D+    +R + K+  L   Y     
Sbjct: 342 RVLAAISRDPGLMEVAGSGRDLYATLS--------DRAFSGRRELAKLALLGAVY----- 388

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                    G  L+  +                                           
Sbjct: 389 -----GQTSGDGLKHLAAL----------------------------------------- 402

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
               R +    +       +  A   +EG  +        P +     +      LP   
Sbjct: 403 ----RRRFPAAVAY----VDEAARAGEEGRLVRTWLGRTCPPVGGGAEEPADEAGLP--- 451

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD--ILCEGMKN--ATKNGY 622
                  + + SY +TA+++       G      +VQ  + D  +L         T  G 
Sbjct: 452 -----REQEEPSYGSTASARAR-----GRFTRNFVVQGSAADWALLMLAALRRSLTGAGL 501

Query: 623 D--IVLTVHDEIVSETPDTPYFSVGT 646
              IV   HDE++   P     +V  
Sbjct: 502 RAEIVFFQHDEVIVHCPQEEADTVRE 527


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 97/730 (13%), Positives = 184/730 (25%), Gaps = 113/730 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58
           M  L  DIET               ++     CA+  D      K +   +      DL 
Sbjct: 1   MKLLLSDIETNGLLDT--------VDKFH---CAWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111
           +    E  + V HN   ++    KK      G  ++IP K  + T V++R          
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLK-DT 107

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       K+    +L A   +       Y    A  ++  +   +YCK+DV+ T 
Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTL 167

Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
           +LF++ +  +                E +   L       GY  D     +L   +A  R
Sbjct: 168 KLFEKFMGDTWYFPNGVDGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265
            ++  ++ +                  +    L  Y  +               TL   L
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKRPTLAKTL 287

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
              +        +     SS + I+K+      V +D    G       + +      + 
Sbjct: 288 YLKDAPFTPIQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLI 346

Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             + +P+ E   E ++ Q +         A         +    +  NG     A  +  
Sbjct: 347 PEEFIPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443
               +  I                           P  +V  +       +EL  LG+  
Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHLDYHTGKPWIQVGVD----ASGLELRCLGHFM 458

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                    +            + +     D  +   +         +        G   
Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518

Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558
           +     + K +      +  L + + +         GG+   +                 
Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616
            I     R++                                ++Q+    I  + +    
Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604

Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663
                 GY          +  VHDE             +V      M +    W    PL
Sbjct: 605 KGMRAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664

Query: 664 KAEGYEAKRY 673
             EG     +
Sbjct: 665 DTEGKIGANW 674


>gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Megamonas hypermegale ART12/1]
          Length = 215

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 77/292 (26%), Gaps = 88/292 (30%)

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A ++ +   I AF + +DI+  T A+ F  PID+V+ E R   K +   +         
Sbjct: 1   MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGII-------- 52

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
                  G+                                   A    +          
Sbjct: 53  ------YGIS------------------------------AFGLAKNLHISPKEAGEYID 76

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
            +  +  GV     ++ E                              D  +     RR 
Sbjct: 77  NYLQECSGVKNFMHEIVEKAHQ--------------------------DGFVTTLFGRRR 110

Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622
               +K           ++              +Q  + DI+   M  A       K   
Sbjct: 111 YLPAIKSSNFNQRALAERM---------AMNTPIQGTAADIIKIAMNRASEAIKEAKLKS 161

Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673
            I+L VHDE+V E        V  + +  M    S    +PL  +    K +
Sbjct: 162 RILLQVHDELVLEVVKEEIEKVSEILTTAMQNTAS--LKVPLIIDINYGKNW 211


>gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2]
          Length = 588

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/565 (15%), Positives = 145/565 (25%), Gaps = 139/565 (24%)

Query: 1   MSKLFIDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           M  L  DIET             V    E   +    + +DD   +    +    +  + 
Sbjct: 1   MK-LVFDIETDGFLRKLTTVHCVVAKDIETGEV----FKFDD-SGRHQSVSSGLTLLMEA 54

Query: 58  LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKR-WICTSVLART-----NGL----- 105
            +           HN   F+    ++      P +  +  T +L+R              
Sbjct: 55  EEL--------WGHNIIGFDVPAIQEIYPFFQPWESTYYDTLILSRLFFTDMLDRDLRSK 106

Query: 106 ----------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                       SL+     L       K E GK L                   +    
Sbjct: 107 PANMPGNLYGRHSLEAWGYRLGV----LKSEYGKQLHG-----------------DWATY 145

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLK 208
                EYC++DVEA   + K   P  +        E D  L+       G+  D+D    
Sbjct: 146 TPEMLEYCEQDVEANLPIVKLFQPKLEQYADAIKTEHDCALVMTRQEQAGFPFDIDKARA 205

Query: 209 LQELIAQERKKLDEDIVKLTDG--------------------------IIRSSRQTYALR 242
           L+  +  E + L +++                                   S      + 
Sbjct: 206 LESKLRSELETLSDEMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEFSPTSRDHIA 265

Query: 243 MYLFLITGI---DLVDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSE 297
                  G    ++ D  +  +   + ++  T+ AK    IL      G      N+  +
Sbjct: 266 WAFQQHRGWEPIEMTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGKNSWLQ 325

Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357
            V  DGR+  +     A  TGR +        +P                          
Sbjct: 326 MVEKDGRIHHSCVLNTA--TGRNAHMRPNLAQVPS------------------------- 358

Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
                  R       G   V AD +G+E R LA          A  +G            
Sbjct: 359 ---GHEFRELFTPGEGYVQVGADASGLELRCLAHY-------LARFDGGKFGKVLLEGDI 408

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWE 476
           +T +  +    R  GK +   L Y GG           G   +  +    K         
Sbjct: 409 HTDLANIYGTDRKTGKTVTYCLIYGGGDTKL---GLSAGEPKKSAASRGKKIRQAIMKDL 465

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGT 501
              +  +    +  +  V   + G 
Sbjct: 466 DGFAQLITAVQERAQSGVITGIDGR 490


>gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 141

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 44/173 (25%)

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
             + A++ GVL   +      A                              +     RR
Sbjct: 2   DRYFARYPGVLNYMERTRAQAAEQG--------------------------FVETIFGRR 35

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621
           L   D+      L        R            +Q  + DI+ + M             
Sbjct: 36  LYLPDINAKNQSLR---KGAERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLD 86

Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
             ++L VHDE+V E  +     V   +   M+     A  +PL  E      +
Sbjct: 87  ARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAAQLA--VPLLVEVGVGNNW 137



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 7/73 (9%), Positives = 18/73 (24%), Gaps = 9/73 (12%)

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
           +   F  +    ++    + Q  E    + + G    L           +    + L +G
Sbjct: 1   ADRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYL---------PDINAKNQSLRKG 51

Query: 528 FACVVQEGGSISA 540
              +         
Sbjct: 52  AERMAINAPMQGT 64


>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 727

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 99/310 (31%), Gaps = 55/310 (17%)

Query: 80  FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA---LNFSEHLTKMEEGKALIA 133
             +++GI +       T +            SL+ A      L+F E  ++  +G   + 
Sbjct: 426 LLESVGITL-PTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGT--LD 482

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                   +   D  + +      L            +     L+     E  +  +   
Sbjct: 483 LDDMDGSSNTQADELQRHAAIVDMLA---NVLADLLDQRAQFGLLKSI--ELPVSKVLYG 537

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
           +   G ++D+  + ++++  A + ++  ++I   + G   + +    L+  LF   G+  
Sbjct: 538 MEHAGAQVDMIRLTEMRDQFAADARQA-QEIAWESAGERVNLQSPKQLQKILFEDMGLKP 596

Query: 254 VDMSEG----TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS 301
              ++     T  + L       L  D        L+ +R  +    I  + TL +A + 
Sbjct: 597 TKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNP 654

Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DGR+  T +   A  TGR S      QN+P                            A
Sbjct: 655 RDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAA 689

Query: 361 SDCVRSCIIA 370
              +RS  + 
Sbjct: 690 GREIRSAFVP 699


>gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H]
 gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H]
          Length = 1245

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 114/375 (30%), Gaps = 52/375 (13%)

Query: 274  AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
              + +     S       +  L + +     ++       GAS TGR S      QN+  
Sbjct: 804  IINNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGAS-TGRLSCEHPNLQNIHS 862

Query: 333  QERSEEILT-QTIQALNRGETIADPLGLASDCVRSC------IIASNGKKLVVADLAGIE 385
            + R    L  +   ++  G+            + +C         S+G+ L+  D   +E
Sbjct: 863  RFRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQME 922

Query: 386  ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
              V+A+++ +   +K   +G+    T       T   +V+ E R + K +   + Y    
Sbjct: 923  LFVMAYLSFDRQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMTKTVIYGILYGQTE 979

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                       L + +   +   ++ F+ +          +           L+G    +
Sbjct: 980  N-----GLARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGRKR-I 1033

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
            ++   + K++  + +   +    A +++   ++ +           +       +     
Sbjct: 1034 IEPTVKNKYR--ISMNTPIQGCAADIMK--FALLSCLSIMTHGRGRQVVSNFGSV----- 1084

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---- 621
                    K D   +   T               N+    +            +N     
Sbjct: 1085 ---HEPHNKYDVHSMGHWTQSARLLEI------NNV---SAA--------LLEENKPFLE 1124

Query: 622  -YDIVLTVHDEIVSE 635
               ++L VHDE++ E
Sbjct: 1125 ATKLILQVHDELLFE 1139


>gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 80/284 (28%), Gaps = 88/284 (30%)

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +AF++  DI+  T ++ F+TPID+V+K QR+  K +   + Y              
Sbjct: 3   KKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYG-----ISDYGLSQ 57

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
            L++                                            +   + +   + 
Sbjct: 58  NLNIP---------------------------------------RKRAKEYIENYLNTYP 78

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            + +  KD+ +                                 +    +RR    ++  
Sbjct: 79  QIKKYMKDIVKKAKEEG--------------------------FVNTIFNRRRYVPEINS 112

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629
               + +   ++              +Q  + DI+   M N+ +N         IVL +H
Sbjct: 113 KNFNVRSFGERV---------ALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIH 163

Query: 630 DEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672
           DEI+ E           +  S M +       +PL  +      
Sbjct: 164 DEIIIEASKKDLTKAKEILKSSMEEAVK--LKVPLLVDIDSGDS 205


>gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60]
 gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60]
          Length = 587

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/561 (14%), Positives = 141/561 (25%), Gaps = 133/561 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M  L  DIET    P   +     A            D +    +D T       + L+ 
Sbjct: 1   MK-LAFDIETDGLIPDLTIIHCIVARD---------IDTDEEFRFDGTGDYPSIKEGLEL 50

Query: 61  LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-----NGL--------- 105
           L  +      HN   ++    +K      P      T +L+R                  
Sbjct: 51  L-SKADELWGHNIVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDFRSRPALM 109

Query: 106 ------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   SL+     L       K E GK+L                   +        
Sbjct: 110 PGNLYGRHSLEAWGHRLGH----HKSEFGKSLEG-----------------DWSTYSPEM 148

Query: 160 GEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            EYC RDVE +  L K  +P         D E ++  +       G+  D+     L+  
Sbjct: 149 LEYCARDVEVSVALAKTFVPKIPEYQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEGK 208

Query: 213 IAQERKKLDEDIVKLTDGI--------------------------IRSSRQTYALRMYLF 246
           +  E   L +D+ +    +                            +    + +     
Sbjct: 209 LRLELDTLSDDMRETFHFVDGGVMTPKRSNKVRHYFENAPFCKLREFNPTSRHHIAWAFE 268

Query: 247 LITGIDLVDMS-----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              G +  + +     +   + +   +    LA   IL      G      N   +    
Sbjct: 269 HHRGWEPKERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWLKLERK 328

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GRL  +      + TGR +        +P                              
Sbjct: 329 -GRLHHSCVLN--TNTGRQAHMRPNLAQVPSAHEY------------------------- 360

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              RS    S+    V +D +G+E R L           +  +G            +T +
Sbjct: 361 ---RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTAL 410

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAES 480
            ++    R  GK +   L Y GG           G      S+   +            +
Sbjct: 411 AEIYGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFA 467

Query: 481 HHLWMQDQYPEFAVKDKLIGT 501
                  +  +  V   L G 
Sbjct: 468 DLNAAIQERAKSGVLKGLDGR 488


>gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/573 (11%), Positives = 145/573 (25%), Gaps = 145/573 (25%)

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           A+            AT  +F  L  +   E  +  L + ++  G  ++ +++  +   + 
Sbjct: 376 AYYEAYLQSVESSGATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLE 435

Query: 215 QERKKLDED----IVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILS 266
           Q+ K L E     +  +      S          L        G      ++G ++  + 
Sbjct: 436 QQIKALIEKGNVALQAMATASNESIDMETVDAWNLIKTLQSQFGGPW-TFAKGNVEEQMQ 494

Query: 267 HSNITQLAKD------------LILNRLASSGSA---ILKLNTL---------------- 295
                   K              +  R     S      K  ++                
Sbjct: 495 QLGAYLDEKQSCADSNVARIWLALHERREFKRSLMEGFTKGASMHARLIAIPEEMASTEG 554

Query: 296 -----SEAVSSDGRL----RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                   V +  RL          + A+ +  +       Q + +            + 
Sbjct: 555 GGHSNPHHVEAQYRLFFSVHPKWSVHHATTSRLFCSR-PCLQTVAKNPP-------ISRT 606

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +R       G  LV  D   IE RV+A ++G+   ++   +G 
Sbjct: 607 APSSSPPVTIFSNPKWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGS 666

Query: 407 DIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           D+      +    P    V+   R   KV+   L Y  G +           ++  F++ 
Sbjct: 667 DVLAEMALRVMQLPRLTDVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQ 726

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
              +                                      +++   +  V    K   
Sbjct: 727 PPLS---------------------------------ARQFLRSFNQCYPAVQGFLKSTR 753

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
                   E    +   + ++        ++ V + L                       
Sbjct: 754 ---LRAFHEKRCATLNGLRDLSGEPDGNRRKQVAVAL----------------------- 787

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----------IVLTVHDEIVS 634
                           +Q  +  IL   M    +  ++           +VL+VHDE+V 
Sbjct: 788 ---------------AIQGGAAVILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVY 832

Query: 635 ETPDTPYFSVG-TLCSLMT-KNPSWAKGLPLKA 665
             PD     V   +  ++  +  + +  +PL  
Sbjct: 833 AVPDGAVSFVAPKIKQILEQQAAALSLSVPLPV 865


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 85/699 (12%), Positives = 166/699 (23%), Gaps = 194/699 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQSAMP--SDLLQ 59
           +  DIET                Q  I     AW   D  V      +    P   + ++
Sbjct: 37  VATDIETPGLL-----------RQFDINCVTAAWRHGDGRVHSV-LLDPDRTPHHDEAVR 84

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLARTNGLP----SSLKNA 112
            + D   + +  N +F+        G+  P    ++++ T + AR          SL   
Sbjct: 85  EIYDSAEVIILQNGVFDLPALL-HSGLITPEQIREKFLDTLLPARMIDTSSPMARSLTML 143

Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               L       ++  G  L  +          Y+    +       +      D   T 
Sbjct: 144 VKRHLGVE----ELTGGIELAFKAAGYKRQQDGYEGMDIDSPI----YRLGAMADTVMTL 195

Query: 172 ELFKRLIP---------------LSDGERDLWLLDQTIND---------RGYRIDLDLVL 207
            L+  L                   D     +++++ I +         +G  +D   + 
Sbjct: 196 ALWPVLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITELRIVGTRVAKGVNVDRGALE 255

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSIL 265
           +  + +  +R++    +  +     +       +  YL  +  +         G LK+  
Sbjct: 256 RYADSVEDDRRRATATLAAVGLEGGKGKES--KIIEYLASVGHLPADWPRTPSGKLKATK 313

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                           LA        L  +       GR    +   GA+ TGR S    
Sbjct: 314 DLMEGLGDPIATAQRTLAHMDQLTGYLEKVEAQSQVTGRCHPQISVAGAAATGRMSISSP 373

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             Q                                    R+ + A  G+++   D + IE
Sbjct: 374 PLQQFSGPA------------------------------RAILTADEGQRMWSVDWSQIE 403

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
                                                        +    E    +  GA
Sbjct: 404 PVT---------------------------------------MALLAGDSEFLAPFAAGA 424

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            +++ +    G++                  +             + A        +   
Sbjct: 425 DLYEPIMRAAGIE--------------RKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQ 470

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           +++   A      +    +                                   IV    
Sbjct: 471 LRRQMFAAMPESSKFMSRVQ--------------------------TLGDTHGKIVTAGK 504

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623
           R L                         G K T  I Q  + DIL E +    + G    
Sbjct: 505 RVLDVDSGF-------------------GYKATNYICQGTALDILTETIIELDRRGLGDS 545

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662
           ++  +HDEI+   P         +  +M   P + +  P
Sbjct: 546 MLWWMHDEILVSGPP---EVAREVQEVMEIVPDFMRTWP 581


>gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 142

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258
             ++ K  E I     +L++    +  G   +   T  L+  LF   GI  +  +     
Sbjct: 1   PAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAP 59

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317
            T + +L    +      +IL     +       + L   ++   GR+  +      + T
Sbjct: 60  STSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TAT 118

Query: 318 GRWSGCVFQPQNLPRQERSEEILT 341
           GR S      QN+P +      + 
Sbjct: 119 GRLSSTDPNLQNIPVRNEEGRRIR 142


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 97/718 (13%), Positives = 178/718 (24%), Gaps = 197/718 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58
           L  DIET                   I     AW   D   V     D        + + 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108
           +   L       + HN+ F+        G+   ++  KR + T VLAR       P    
Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
             L       L  SE    ME      G        +G     P     A       L  
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216

Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           E   R       L                 + D +  +  +    +  G  +D + + + 
Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
              +A E+     D+                  +              +G L++  +   
Sbjct: 277 LNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLE 336

Query: 270 ITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                  L   +L+ +        L  +S   +  GR    +   GAS TGR S    + 
Sbjct: 337 YLAEINPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQVATLGASATGRMSYGSPEL 396

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q  P+  R                                I+  +G  L   D + IE  
Sbjct: 397 QQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIEPV 425

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
                                                      + + ++    Y+ G  +
Sbjct: 426 T---------------------------------------MANMARDIDFLAAYEAGEDL 446

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           +  +    G+D       + S+       +  +     ++   +              +K
Sbjct: 447 YGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ--------------IK 492

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +   A  +   +    + E  A   +   +       +   +                  
Sbjct: 493 RQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF----------------- 535

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIV 625
                                       K     VQ  + D+L   +    + G   ++ 
Sbjct: 536 ----------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDELY 567

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675
           L +HDE+V  TP         +  +M+  P     WA+  P+    +A+     ++ K
Sbjct: 568 LAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618


>gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
 gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 79/498 (15%), Positives = 126/498 (25%), Gaps = 148/498 (29%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE----------RKKLDEDI 224
           +RL  L   E    L+ + +   G   D D    L      E           + + +++
Sbjct: 180 QRLSFLMALESAGALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEAVAQEL 239

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +L D    +      L   L    GI +   S+  L+           A   +      
Sbjct: 240 RRLLDAPELNPDSPKDLLRALNSA-GIPVTTTSKWALRE------HRHPALAPLERYKHL 292

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +           +   SDGR R      G   TGRW         LPR            
Sbjct: 293 ARLWTAHGWAWLDEWVSDGRYRPVY-TPGGVVTGRWGADGGGALQLPR------------ 339

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +R    A +G   V+AD + +E RVLA ++G+    +A   
Sbjct: 340 ------------------AIRGAARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGRG 381

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
                       +    D      R   K   L   Y              G+  Q   Q
Sbjct: 382 ---------GDMYQRIADAGVVPSREHAKYGMLGAMY----------GGTTGVSAQVLPQ 422

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                                                        +R      +     +
Sbjct: 423 ---------------------------------------------FRQAFPTAMA----M 433

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            E  A V + GG ++       P  V+          +   RRL                
Sbjct: 434 VESAARVGERGGQVTTWLGRTSPPGVVSHPDESDDADVARERRL---------------- 477

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------------IVLTVHDEI 632
               R R+YG      IVQ  + +     M       +             +V  +HDE+
Sbjct: 478 ----RSRSYGRFTRNFIVQGSAAEWAMAWMVEIRLRLHQLSLGDPTLSAPSLVFFLHDEV 533

Query: 633 VSETPDTPYFSVGTLCSL 650
           +  TP     +V  +  +
Sbjct: 534 LIHTPVEWAETVAEVVRV 551


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 97/718 (13%), Positives = 178/718 (24%), Gaps = 197/718 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58
           L  DIET                   I     AW   D   V     D        + + 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108
           +   L       + HN+ F+        G+   ++  KR + T VLAR       P    
Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
             L       L  SE    ME      G        +G     P     A       L  
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216

Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           E   R       L                 + D +  +  +    +  G  +D + + + 
Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269
              +A E+     D+                  +              +G L++  +   
Sbjct: 277 LNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLE 336

Query: 270 ITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                  L   +L+ +        L  +S   +  GR    +   GAS TGR S    + 
Sbjct: 337 YLAEINPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQVATLGASATGRMSYGSPEL 396

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
           Q  P+  R                                I+  +G  L   D + IE  
Sbjct: 397 QQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIEPV 425

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
                                                      + + ++    Y+ G  +
Sbjct: 426 T---------------------------------------MANMARDIDFLAAYEAGEDL 446

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
           +  +    G+D       + S+       +  +     ++   +              +K
Sbjct: 447 YGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ--------------IK 492

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +   A  +   +    + E  A   +   +       +   +                  
Sbjct: 493 RQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF----------------- 535

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIV 625
                                       K     VQ  + D+L   +    + G   ++ 
Sbjct: 536 ----------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDELY 567

Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675
           L +HDE+V  TP         +  +M+  P     WA+  P+    +A+     ++ K
Sbjct: 568 LAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618


>gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
 gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
          Length = 689

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 96/375 (25%), Gaps = 27/375 (7%)

Query: 172 ELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +   L P     E  +  L   +   G  +D   + +    + Q  + L      L  G
Sbjct: 268 RVQPWLRPQAVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVRQRMEALTSAASSLLGG 327

Query: 231 IIRSSRQTYALRMYLFLITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              +   +  L + L+    +                +           ++       +A
Sbjct: 328 RTINLGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVTERAKQVVGTRMDGTAA 387

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             +L+         GR     ++    R  +W+   ++          +           
Sbjct: 388 GAELDDGGGGGGGGGRRGPGGRWNRLRRGFQWAVTKYEV----VVPLGDTTEGSPCGGGG 443

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                           R+  +A  G+ LV AD + IE R+LA ++G+    +    G + 
Sbjct: 444 EEGAGVLRGDRLVVVARNAFVAPPGRLLVAADYSQIELRLLAHMSGDLRLQELLKRGVEQ 503

Query: 409 YVTTYAKAF---------------NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                                    T    VS   R   K +   + Y   A+      +
Sbjct: 504 SEGRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIYGMTAQGLAQQLA 563

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK-LIGTACELVKKAWRA 512
             G+ L+        TS    +   ++                  L+G           +
Sbjct: 564 EYGVGLE--EATALRTSFLRHFAGVQAFITSSLYHARRHGYITTGLLGRRR--PIAGVNS 619

Query: 513 KHQGVLQLWKDLTEG 527
               V+     + + 
Sbjct: 620 SDPRVVNSIVQIHDE 634


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 100/299 (33%), Gaps = 27/299 (9%)

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            + ++    G         A    R  ++AS G   V AD + +E R++A ++G+   +K
Sbjct: 192 AEAMKDGGLGARCPWFAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLK 251

Query: 401 AFANGEDIYVTTYAKA--FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
            FA+G D++ T  A         + +++E+R   K++   + Y   A           L 
Sbjct: 252 VFADGGDVFRTIAAALKGRGKKAEDITEEERRQTKIVVYGVLYGQSADALV-----PQLR 306

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518
           L +        +  + + +       +++   E    + L+G          R     + 
Sbjct: 307 LSRPEAFKIRQTVLKTFPKLTEFLKKVKEDCKECGYVETLLGR---------RRYLPQIN 357

Query: 519 QLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
              K              +    A  +      V  R +R   +  P+ + +        
Sbjct: 358 STDKAERSRAERQAANTTTQGSAADLLKLAATNVAARLERCEWMSRPAGKPICTPPPNA- 416

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
            +   T++S L                   RD     +    +    +VL++HDE++ E
Sbjct: 417 -AAGGTSSSALASGTADATVPCRFP-----RDGGRSQLAR--RPACRLVLSIHDELLYE 467


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 101/720 (14%), Positives = 186/720 (25%), Gaps = 201/720 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58
           L  DIET                   I     AW   D   V     D        + + 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108
           +   L       + HN+ F+        G+   ++  KR + T VLAR       P    
Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
             L       L  SE    ME      G        +G     P     A       L  
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216

Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           E   R       L                 + D +  +  +    +  G  +D + + + 
Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSH 267
              +A E+     D+     G+   + +   L  YL     +        +G L++  + 
Sbjct: 277 LNQVADEQAIYTADLAAH--GLDGGTGKGAKLVQYLAERGELPQPWPRTPKGALRATKAD 334

Query: 268 SNITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                    L   +L+ +        L+ +S   +  GR    +   GAS TGR S    
Sbjct: 335 LEALATVNPLAKAQLSLANIEKTLGYLSKVSTQAAVTGRCHPQVATLGASATGRMSYGSP 394

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
           + Q  P+  R                                I+  +G  L   D + IE
Sbjct: 395 ELQQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIE 423

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
                                                        + + ++    Y+ G 
Sbjct: 424 PVT---------------------------------------MANMARDIDFLAAYEAGE 444

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            ++  +    G+D       + S+       +  +     ++   +              
Sbjct: 445 DLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ-------------- 490

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           +K+   A  +   +    + E  A   +   +       +   +                
Sbjct: 491 IKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF--------------- 535

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623
                                         K     VQ  + D+L   +    + G   +
Sbjct: 536 ------------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDE 565

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675
           + L +HDE+V  TP         +  +M+  P     WA+  P+    +A+     ++ K
Sbjct: 566 LYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 101/720 (14%), Positives = 186/720 (25%), Gaps = 201/720 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58
           L  DIET                   I     AW   D   V     D        + + 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108
           +   L       + HN+ F+        G+   ++  KR + T VLAR       P    
Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
             L       L  SE    ME      G        +G     P     A       L  
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216

Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           E   R       L                 + D +  +  +    +  G  +D + + + 
Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSH 267
              +A E+     D+     G+   + +   L  YL     +        +G L++  + 
Sbjct: 277 LNQVADEQAIYTADLAAH--GLDGGTGKGAKLVQYLAERGELPQPWPRTPKGALRATKAD 334

Query: 268 SNITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                    L   +L+ +        L+ +S   +  GR    +   GAS TGR S    
Sbjct: 335 LEALATVNPLAKAQLSLANIEKTLGYLSKVSTQAAVTGRCHPQVATLGASATGRMSYGSP 394

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
           + Q  P+  R                                I+  +G  L   D + IE
Sbjct: 395 ELQQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIE 423

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
                                                        + + ++    Y+ G 
Sbjct: 424 PVT---------------------------------------MANMARDIDFLAAYEAGE 444

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            ++  +    G+D       + S+       +  +     ++   +              
Sbjct: 445 DLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ-------------- 490

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           +K+   A  +   +    + E  A   +   +       +   +                
Sbjct: 491 IKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF--------------- 535

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623
                                         K     VQ  + D+L   +    + G   +
Sbjct: 536 ------------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDE 565

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675
           + L +HDE+V  TP         +  +M+  P     WA+  P+    +A+     ++ K
Sbjct: 566 LYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618


>gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei]
 gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei]
 gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei]
 gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei]
 gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei]
 gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei]
 gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei]
 gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei]
 gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelobacter carbinolicus DSM 2380]
          Length = 593

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 92/680 (13%), Positives = 173/680 (25%), Gaps = 181/680 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E  S  P  +        +    L +     + V++W   +     +    + 
Sbjct: 10  KVILLDSE-FSQPPGERPTPHCLVAKE---LFS----GKTVRVW-IEKGEQPLAA--PFP 58

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+  + VA+ +  E   F + LG  +P          A                    +
Sbjct: 59  TDKNTLFVAYLASAEMTCF-QALGWKLP----------AYVID-------LYAEFCLLTN 100

Query: 122 LTKMEEGKALIA---RFCKGSIDSPPYDCTRA-------NHVQAWQLFGEYCKRDVEATR 171
              +  GK L+     F +  +D+      R                  +YC+RDV A  
Sbjct: 101 GFFLPRGKGLLGALAYFGEEILDAVEKKDMRELAQRGGPYTEDEKTDLLDYCQRDVLALE 160

Query: 172 ELFKRLIPLSDGER-----DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            L+K ++P  DG+R     +       I   G  ID   +  L+E     +  L E++  
Sbjct: 161 RLWKHMVPHLDGDRSLLRGEYMKAVAKIEMTGIPIDTLALADLRENWEVIKTSLIEELGA 220

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLIL 279
                     +T     YL    GI               T K +       +  K+L  
Sbjct: 221 PYGVYKNGKFKTDLFVQYLKNK-GIPWPLTPTRKPKTDADTFKEMAKCYPELKPLKELQQ 279

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                  +           V +DGR R     +G+              N P   +    
Sbjct: 280 LLGKLKLN--------KLQVGTDGRNRYLSGVFGSKTGR----------NQPSNSKC--- 318

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                            +      +R  +    G  L   D    E  +   ++G++   
Sbjct: 319 -----------------IFGLPSWMRKLVRPGPGNGLAYLDYEQQEFGIAGALSGDEAMR 361

Query: 400 KAF--ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
           +A+   +    +      A      +   + R+  K   L + Y  G             
Sbjct: 362 QAYISGDPYLAFAIQAGAAPRGATKESHGDIRSRFKATALGVQYGMGQDRL--------- 412

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                                              A+   +     + +    R  +   
Sbjct: 413 -----------------------------------AMNLNISKGEAKALLDLHRKTYARF 437

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
            Q  +D+          GG +  +                                    
Sbjct: 438 WQWQQDIENKALIEGSIGGVLGWK------------------------------------ 461

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
             +   +    R       L    +QA   ++L   +    +    IV  VHD +V E P
Sbjct: 462 --MRITSKTKDRT------LANFPMQANGAEMLRLAVCLCAERNIKIVAMVHDALVIEAP 513

Query: 638 DTPYFSVGTL-CSLMTKNPS 656
                +  ++    M +   
Sbjct: 514 IAGLEAAKSIAIQAMKEASE 533


>gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei]
 gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei]
 gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei]
 gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei]
 gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei]
 gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei]
 gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSN------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 592

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 90/581 (15%), Positives = 140/581 (24%), Gaps = 140/581 (24%)

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSE---HLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           W  T+V ART          C  L  S     L+      AL          + P +   
Sbjct: 88  WDDTAVWARTLIAAGVRVARCHDLRLSHAILRLSTQTADSALARLPAGPWDAAAPAEREP 147

Query: 150 ANHVQAWQLFGEYCKRDVE---ATRELF----------KRLIPLSDGERDLWLLDQTIND 196
           +     +        R  +   A   L            RL  L   E    L+   ++ 
Sbjct: 148 SASATLFDDLDASDGRSPDELVAELRLQLEAIAGSAESGRLRLLLAAESAGALVAAEMSA 207

Query: 197 RGYRIDLDLVLKLQELIAQ----------ERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
            G   D  +   L   +               +L   I ++      +      +   L 
Sbjct: 208 DGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPPDVLRALR 267

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              G+D     +  L+ I             +L     S        T  E    DGR  
Sbjct: 268 -RAGVDASSTRQWELQEI------DHPVIAPLLEHKKLSRLLTANGWTWMETWIRDGRFH 320

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                 G   TGRW+        LPR                               +RS
Sbjct: 321 PEYVPGGV-VTGRWAASGGGALQLPR------------------------------QIRS 349

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            + A  G +LVVAD A +E RVLA ++ +     A    +       A            
Sbjct: 350 AVRADPGWRLVVADAAQLEPRVLAALSEDRAMADAGRGTDLYQGLVDAGVV--------- 400

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           + RA  KV  L   Y   +                             + +A  +     
Sbjct: 401 DTRAHAKVAMLGAMYGATSG----------------ESGRLMPRLVRAYPRATGYVERAA 444

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                  V    +G +      AW      V Q+ +      +   +   S   +     
Sbjct: 445 RAGESGGVVSTRLGRSSPPPGDAWV----DVQQIGRAGEASPSDAARARTSARDQGRFTR 500

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
             +V           L   RR                                     ++
Sbjct: 501 NFVVQGSAAEWALCWLAGLRRR------------------------------------LA 524

Query: 607 RDILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645
                       + G    +V  +HDE++  TPD     V 
Sbjct: 525 A---------LERPGSRPHLVFFLHDEVMVHTPDDRVDEVR 556


>gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411]
 gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411]
          Length = 793

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/420 (12%), Positives = 109/420 (25%), Gaps = 84/420 (20%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---------TLSEAVSSDGRL 305
              E   +++ S  +  +  +        +                   +   V  DG +
Sbjct: 382 KTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGKDGIV 441

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
              L     + TGR S  +   QNLP+ ++S                           V+
Sbjct: 442 HHQL-QMVNTVTGRLSSALPNLQNLPKGDKS--------------------------EVK 474

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +  ++   G  +V +D   +E  V   ++G+   I     G D++    A+      D V
Sbjct: 475 TLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYV 534

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                   K  +  + Y                            ++     +  S    
Sbjct: 535 ----FERAKDKKH-IEY-------------------------IVWNSKRSKAKGFSFQRA 564

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                   A    +     + + +     + G+ +  K   +     +      S   + 
Sbjct: 565 YGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNL----VPSKMYIT 620

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +     +  +    +   P  +R      +           QL    T         VQ 
Sbjct: 621 SSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSST---TTKNYPVQG 677

Query: 605 ISRDILCEGMKNA----TKNG-----YDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
              + +   M          G       IV TVHD    +  P+    S+  L + M + 
Sbjct: 678 TGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACMEEA 737



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 59/263 (22%), Gaps = 26/263 (9%)

Query: 4   LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  D+ET        K   +             +W +             +P D  + + 
Sbjct: 19  LAWDLETGTKTLHKRKASPFDVQNDIWAVGFGRSWQESKGYH-KAVHG--IPEDWFRVIL 75

Query: 63  DETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNGLP------SSL 109
           +   + V  N  F+ +   +        +   +   +     +              +S+
Sbjct: 76  NNCRVLVGFNIKFDLLYALRDKANHTAWMQWVVEGGKVWDCQLAEYLLQGMAQEWQIASM 135

Query: 110 KNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRD 166
            +       S    K    K+                 D             G       
Sbjct: 136 DDVAPLYGGSC---KDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNTANIFK 192

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +      +  I          L        G  +D+    ++++ +  +   L E + K
Sbjct: 193 GQLKLAKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLSEQVNK 252

Query: 227 LTDGIIR---SSRQTYALRMYLF 246
                +    +          LF
Sbjct: 253 GLPEDLPFEFNWASPKQRSALLF 275


>gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei]
 gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei]
 gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei]
 gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei]
 gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei]
 gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSN------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei]
 gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei]
 gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei]
 gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei]
 gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei]
 gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei]
 gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei]
 gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 69/251 (27%), Gaps = 34/251 (13%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNA---CLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +        +       +   GK    +  +       +            LF     
Sbjct: 60  SNDLGKIAEDHDYHDMPRDEDIYGKGAKRQVPEDDKLFGQFARKSN------ALFALRPD 113

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E I
Sbjct: 114 LTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281
                    +      L   LF    + ++  ++    T   +L+           IL+ 
Sbjct: 172 YAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230

Query: 282 LASSGSAILKL 292
              +      +
Sbjct: 231 RGWAKLNSTYV 241


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 134/505 (26%), Gaps = 138/505 (27%)

Query: 157 QLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA- 214
            L   Y  +     +  +  R+  L+  E    L+   ++  G     +    L   +  
Sbjct: 135 ALLRVYADQLRRHQQAEYPERMRLLTASESSGMLIAAEMDRAGLPWSAETHRALLTELLG 194

Query: 215 ---------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                    +   +L E +       +R       L+   F   G  L       L+   
Sbjct: 195 ERYAGGGEPRRLTELAEQVSAAFGRRVRPDLPADVLKA--FKQAGYQLTSTRRWELQ--- 249

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
               I   A + ++              +       DGR R      G + +GRW     
Sbjct: 250 ---TIDHPAVEPLIEYKKLYRIYTANGWSWLNDWVHDGRFRPGFVP-GGTVSGRWITNGG 305

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
               +P+                               +R  ++A  G +LVVAD + +E
Sbjct: 306 GGLQIPK------------------------------VIRRAVVADPGWRLVVADASQLE 335

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA I+ +   ++   N  D+Y            DK     RA+ K+  L   Y    
Sbjct: 336 PRVLAAISRDPGLMEVAGNAADLYKAVS--------DKAFSGDRAMAKLAVLGAIY---- 383

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                     G  L+  +                                          
Sbjct: 384 ------GQTSGDGLKNLAAL---------------------------------------- 397

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                R +    +    D     A   +EG  +        P               PS 
Sbjct: 398 -----RKRFPKAVAYVDD----AARAGEEGRLVRTWLGRTCP---------------PSG 433

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----G 621
            +L  + ++G  +      S+  R R  G      +VQ  + D     M    ++     
Sbjct: 434 SQLDSAQLEGPPADEPQVDSRRARAR--GRFTRNFVVQGSAADWALLMMAALRQSIATYK 491

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGT 646
            ++V   HDE++   P      V  
Sbjct: 492 AELVFFQHDEVIVHCPAEEADQVAA 516


>gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1171

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/432 (12%), Positives = 103/432 (23%), Gaps = 121/432 (28%)

Query: 287  SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI------- 339
            ++  +++ +  ++  D  L         + TGR    +   QN+P+Q             
Sbjct: 789  ASTAQVSRVCYSMHPDWVLHN-------TSTGRIFSSLPNVQNVPKQPPRTAFPIHTLSA 841

Query: 340  --------------------------------LTQTIQALNRGETIADPLGLASDCVRSC 367
                                                +                   +R  
Sbjct: 842  TPSRNSGGDESLRHYSYVDPPTEEDVARWLALAEAALVDQASSAQFPLFPENPQWTLRHL 901

Query: 368  IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426
              A  G  L   D   +E R+LA ++G+    +  +   D+     A     P ID V  
Sbjct: 902  YCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSIDHVRP 961

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
            +QR   KV+   L Y  G +           +     Q                      
Sbjct: 962  QQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHHRGGEASSPGPAPMS---- 1017

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                               + + +   +  +    ++  +                    
Sbjct: 1018 ----------------AHDLLRRFHHVYPRIESYLRETRQEALR---------------- 1045

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                         +   S R+               A  +  R            VQ  +
Sbjct: 1046 ----------SFAVETLSGRK--------SLIAEKDANRRRQRAIAQA-------VQGGA 1080

Query: 607  RDILCEGMKNATKNGYD-----------IVLTVHDEIVSETPDTPYFS-VGTLCSLMT-K 653
             D+L   M+   +  +            +V++VHDE+V   P       V  +  ++  +
Sbjct: 1081 ADVLHSAMRAVHQQRHSFLPYLPAATLALVMSVHDELVYAVPRAAIEEVVRGVQRVLEDQ 1140

Query: 654  NPSWAKGLPLKA 665
                   +PL  
Sbjct: 1141 ARVLRLAVPLPV 1152


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 104/410 (25%), Gaps = 102/410 (24%)

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
           L       R++++ +++  L+ L E +    DG  R        + TGR        QN 
Sbjct: 521 LWHLQRSIRISAAITSV--LSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNP 578

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R    A  G  L+V D + +E R+LA
Sbjct: 579 PSAHNDLY------------------------SIRKAFSARPGNTLIVGDYSQLELRILA 614

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++  +  I+    G DI+       F         E         +   +    +    
Sbjct: 615 HMSRCESMIRQLNQGGDIHSQCAVDLF--------PEVAEAVANGSVGRLHSRIDRRATV 666

Query: 451 MASHCGLDLQQFSQNVKSTSTFED-WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  +      +VK+  + +    +  +  +         A +  L  T    +   
Sbjct: 667 QVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTR 726

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           W    +GV +   ++                                +        R   
Sbjct: 727 WNNSKKGVERWKAEILREVRAC-----------------------SGEFRHPRVGGRHRH 763

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
             D           T+                                   G  IV+ VH
Sbjct: 764 --DGHASRRSRRETTAH----------------------------------GVKIVMQVH 787

Query: 630 DEIVSETP-DTPYFSVGTLCSLMTKN-----PSWAKGLPLKAEGYEAKRY 673
           DE++ E P +    +V  +  LM        P +   + L  +      +
Sbjct: 788 DEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 837



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 68/321 (21%), Gaps = 89/321 (27%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLC-AYA-----WDDEPVKLWDRTEQSA-MPSDLLQ 59
           D E      L +           +    A+      +   P+   D    S  +      
Sbjct: 98  DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 154

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--------LKN 111
           Y  +     + HN   +  +     GI +       T  LAR      S          +
Sbjct: 155 YFENPAKRKIFHNFAADAHVLYGH-GITVRGLE-ADTRYLARLFDSSLSSWEDQVRVSND 212

Query: 112 A-----CLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                     N             E +  + RF                  + +  + +Y
Sbjct: 213 LLVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAH---CSEEKFGEWLKY 269

Query: 163 CKRDVEATRELFKRLIPLS----------------------------------------- 181
              D   T  L++RL                                             
Sbjct: 270 AADDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTFNGMNDPETYTGLSMSD 329

Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------------ 226
                 R    L   I  RG+  + + +++       + ++  E                
Sbjct: 330 FAVKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKEAFRMIAQSLKDRRGQP 389

Query: 227 -LTDGIIRSSRQTYALRMYLF 246
                   + R    +R  LF
Sbjct: 390 LNPQAEFINPRSAKQIRQLLF 410


>gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei]
 gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei]
 gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei]
 gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei]
 gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei]
 gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei]
 gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei]
 gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei]
 gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei]
 gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei]
 gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGLKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927]
 gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei]
          Length = 896

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 96/371 (25%), Gaps = 93/371 (25%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR        Q +P+  +    ++          T  +        +R     + G 
Sbjct: 594 TSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPE------WTMRHLYGPAPGC 647

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGK 433
            L+  D   +E RVLA ++G++  IK  ++  D+              ++V    R   K
Sbjct: 648 VLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDEQVPPHLRETVK 707

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           V+   L Y  G    K               + +  +                       
Sbjct: 708 VVVYGLFYGMGLATMKERVKILMDSAHSVPSSQRKFT----------------------- 744

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
                     + + +A+  ++    +             +         +++      RR
Sbjct: 745 ---------ADTLLRAFHQRYPAAGKFLTRARIRAFHEARCVTLTGINDLSSEKDGNRRR 795

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                 I+                                         Q  S  +    
Sbjct: 796 QHSIARIL-----------------------------------------QGSSSTLFQSA 814

Query: 614 MKNATKNGYDIV-----------LTVHDEIVSETPDTPYFSVG-TLCSLM-TKNPSWAKG 660
           M    +  +DIV           L +HDE++    +     V   +  +M  +   ++  
Sbjct: 815 MVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGIMVEQAQVFSLR 874

Query: 661 LPLKAEGYEAK 671
           +PL+      K
Sbjct: 875 VPLRVSVKVGK 885


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 135/561 (24%), Gaps = 132/561 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M  L  DIET              A+           D   V  +D T       + L  
Sbjct: 1   MR-LAFDIETDGLLRNLTKIHCIVAQD---------LDTNEVYKFDGTGDHPSIREGLAL 50

Query: 61  LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-----NGL--------- 105
           L+D       HN   ++    K+       S     T +L+R                  
Sbjct: 51  LKDAD-ELWGHNIIGYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANM 109

Query: 106 ------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   SL+     L+      K E GK+L                   +        
Sbjct: 110 PAQLYGRHSLEAWGHRLSV----HKSEFGKSLSG-----------------DWSTYSPEM 148

Query: 160 GEYCKRDVEATRELFKRL-------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            +YC RDV  +  L +               E  L  +       G+  D+    +L+  
Sbjct: 149 LDYCARDVVVSVSLARLFTAKVAEYRDCISTEHRLATIMAWQESEGFPFDVAKAERLEGQ 208

Query: 213 IAQERKKLDEDIVK--------------------------LTDGIIRSSRQTYALRMYL- 245
           +  E  KL E + +                          +      +      +     
Sbjct: 209 LRSELLKLSEQMRETFPYVDGGSFTPRTNNGPRGYVKGAAMCRLKEFNPTSRQHIAWAFA 268

Query: 246 ----FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
               +    +      +    ++L +          IL      G      N   + V S
Sbjct: 269 TFRDWEPKELTDTGKPKIDETTLLEYGTDEAKTFARILELQKHLGQLSEGANAWLKKVES 328

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR+  +      + TGR +        +P                              
Sbjct: 329 DGRIHHSCVLN--TNTGRQAHMKPNLAQVPS----------------------------G 358

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R        +  V AD +G+E R L           A  +G            +T +
Sbjct: 359 HEYRELFHPGANRSQVGADASGLELRCLGHY-------LARFDGGKFAKEVVQGDIHTAL 411

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF-SQNVKSTSTFEDWEQAES 480
            ++    R  GK +   L Y GG           G    Q   +  +  S         +
Sbjct: 412 AEIYGTDRKSGKGVTYCLIYGGGDSKL---GLTAGASKAQAVKKGKEIRSRIMANLDGFA 468

Query: 481 HHLWMQDQYPEFAVKDKLIGT 501
                  +  +  V   L G 
Sbjct: 469 ALNAAVQERAKSGVLKGLDGR 489



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 597 LTENIVQAISRDILCEGMKN----ATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
               ++Q+    I    +        + G  Y  +  VHDE+      +     G L  +
Sbjct: 500 ALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDEVHISVAPSQAEQAGQLIQI 559


>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
 gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
          Length = 1712

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 81/336 (24%), Gaps = 79/336 (23%)

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--RSCIIASNGKKLV 377
             +    Q        +        +   +    +          +  R   +A  G+ L+
Sbjct: 1406 LASRAPQCTIQLSTGQKLVYPADQVFRQSAAVAVTADADARKRVIALRDAFVAPKGRLLL 1465

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
              D   +EAR+LA   G+   I  F   +  Y +T +  ++  +                
Sbjct: 1466 SVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVH--------------- 1510

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                         + +    +  +   + +         + +  
Sbjct: 1511 ------------------IASTWLSKALNEVSDMERNGIKQLVYGVIYGMGARSLSREMG 1552

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
            +     E +   +  +   V +  + +  G         SI                   
Sbjct: 1553 VTLAEGEALMSKFDNEFPRVREWTRSVIHGATREGASVPSIL------------------ 1594

Query: 558  VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
                    R    + + G  +    A +Q                QA + DI+       
Sbjct: 1595 -------GRPRHLAGLGGGGTAQERARAQRQ--------AVNTACQASAADIMKAATLEV 1639

Query: 618  TKN-----------GYDIVLTVHDEIVSETPDTPYF 642
             +              +I+L +HDE++ E  +    
Sbjct: 1640 ARRLAAMRDENGRPPAEILLQIHDELLLEVDEDRIE 1675



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 47/195 (24%), Gaps = 28/195 (14%)

Query: 161  EYCKRDVEATRELFKR--------------LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
             Y  RD++    ++                L  L   E     L   +   G  +     
Sbjct: 1100 HYLDRDLKQCLAIYALCTELGRGLVQHSGLLELLVTVEAPTAALLVDMEVTGLMVTPSYW 1159

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------------ 254
               Q   A+ + +  E  V+   G   +      +   +F    + +             
Sbjct: 1160 FHRQGKHARYKMQALEVAVREAVGRYVALGNAEDVSKAIFDDLNVPVPEGLRPRKVKKNG 1219

Query: 255  DMSEGTLKSILSHSNITQLAKDLILNRLASSGSA--ILKLNTLSEAVSSDGRLRGTLQFY 312
                   +  L   +      DL    +     +  + K   +   V  DG    T    
Sbjct: 1220 HKVYAVDQKTLMQLDPPDRCHDLFDWIMEHRRLSHVLSKHAVIDRHVLHDGLRVHTTFTQ 1279

Query: 313  GASRTGRWSGCVFQP 327
              + TGR        
Sbjct: 1280 TGTATGRLKSTDPNL 1294


>gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1]
 gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1]
          Length = 793

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 111/420 (26%), Gaps = 84/420 (20%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---------TLSEAVSSDGRL 305
              E   +++ S  +  +  +        +                   +   V SDG +
Sbjct: 382 KTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSDGIV 441

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
              L     + TGR S  +   QNLP+ ++S                           V+
Sbjct: 442 HHQL-QMVNTVTGRLSSALPNLQNLPKGDKS--------------------------EVK 474

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
              ++   G  +V +D   +E  V   ++G+   I     G D++    A+      D V
Sbjct: 475 KLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYV 534

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                   K  +  + Y                            ++     +  S    
Sbjct: 535 ----FERAKDKKH-IDY-------------------------IVWNSKRSKAKGFSFQRA 564

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                   A    +     + + +     + GV +  K   +     +      S   +A
Sbjct: 565 YGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMKELERNL----IPSKMYIA 620

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   + +  +    +   P  +R      +           QL    T         VQ 
Sbjct: 621 SSYEVGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSST---TTKNYPVQG 677

Query: 605 ISRDILCEGMKNA----TKNG-----YDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
              + +   M          G       IV TVHD    +  P+    S+  L + M + 
Sbjct: 678 TGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACMEEA 737



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/279 (8%), Positives = 61/279 (21%), Gaps = 27/279 (9%)

Query: 4   LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  D+ET        K   +             +W +             +P D  + + 
Sbjct: 19  LAWDLETGTRTLHKRKASPFDIQNDIWAVGFGRSWSESKGYH-KAVHG--IPEDWFRVIL 75

Query: 63  DETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNGLP------SSL 109
           +   +    N  F+ +   +        +       +     +              +S+
Sbjct: 76  NNCRVLAGFNIKFDLLYALRDKDNHTAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIASM 135

Query: 110 KNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRD 166
            +       S    K    K+                 D             G       
Sbjct: 136 DDVAPLYGGSC---KDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNTANIFK 192

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +      +  I          L        G  +D+    ++++ +  +   + E + K
Sbjct: 193 GQLKLAKDRGQIASITLNNAALLYTVEAELNGMYVDVAKGDEIRQQLLAKLVHISEQVNK 252

Query: 227 LTDGIIR---SSRQTYALRMYLFLITGIDLVDMSEGTLK 262
                +    +          LF   G+      +   +
Sbjct: 253 GLPEDLPFEFNWASPKQRSALLFG-GGVKYKSREQSRDE 290


>gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major
            strain Friedlin]
 gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
          Length = 1170

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/459 (12%), Positives = 107/459 (23%), Gaps = 131/459 (28%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA---------------SRTGR 319
            +   + R  +    +  L    +A + DG          A               + TGR
Sbjct: 756  RLHDMFRKVADKLHVCVLEKPRDAAAEDGTAVPDAWTAQASQVCYSMHPDWVLHNTSTGR 815

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--------------- 364
                +   QNLP+Q          + A     +  D        +               
Sbjct: 816  IFSALPNVQNLPKQPPRTMFPIHALSATPSRNSGGDESLRPYSHIDPPTEEDVERWLSLA 875

Query: 365  ------------------------RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                    R    A  G  L   D   +E R+LA ++G+    +
Sbjct: 876  EAAAVDQASPAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQE 935

Query: 401  AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
              +   D+     A     P ID+V  +QR   KV+   L Y  G +           + 
Sbjct: 936  HLSANVDVLALVTASVLRLPSIDRVRPQQRQAVKVVVYGLLYGMGLESMDVRIKKINEEF 995

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                Q                                         + + +   +  +  
Sbjct: 996  AASEQQQHRGEASSSAPAPMP----------------------ARDLLRRFHRVYPRIES 1033

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              ++  +                                 +   S R+            
Sbjct: 1034 YLRETRQEALR--------------------------SFAVETLSGRK--------SLIA 1059

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----------KNGYDIVLTV 628
               A  +  R            VQ  + D+L   M+                   +V+++
Sbjct: 1060 EKDANRRKQRAIAQA-------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSI 1112

Query: 629  HDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPLKA 665
            HDE+V   P       V  +  ++  +       +PL  
Sbjct: 1113 HDELVYAVPRVAIDEVVRGVQRILEDQARVLRLAVPLPV 1151


>gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQEQTDLF--TDMEPTLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 107

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 36/132 (27%), Gaps = 26/132 (19%)

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310
                +  T + +L    +      +IL     +       + L   ++   GR+  +  
Sbjct: 1   KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH 60

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
               + TGR S      QN+P                                +R   IA
Sbjct: 61  QAV-TATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFIA 95

Query: 371 SNGKKLVVADLA 382
                +V AD +
Sbjct: 96  PEDYLIVSADYS 107


>gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei]
 gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +   GK    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLKKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKALKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
 gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
          Length = 115

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 1  MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
          M  L IDIET S  PL K G + Y E     I L AY+ D++PV++ D      +P ++ 
Sbjct: 1  MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60

Query: 59 QYLRDETVMCVAH 71
            L DE V+  A 
Sbjct: 61 LALEDEFVIKWAW 73


>gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas
           phage Xp10]
 gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10]
          Length = 794

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 111/420 (26%), Gaps = 84/420 (20%)

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---------TLSEAVSSDGRL 305
              E   +++ S  +  +  +        +                   +   V SDG +
Sbjct: 382 KTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSDGIV 441

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
              L     + TGR S  +   QNLP+ ++S                           V+
Sbjct: 442 HHQL-QMVNTVTGRLSSALPNLQNLPKGDKS--------------------------EVK 474

Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           +  ++   G  +V +D   +E  V   ++G+   I     G D++    A+      D V
Sbjct: 475 TLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYV 534

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                   K  +  + Y                            ++     +  S    
Sbjct: 535 ----FERAKDKKH-IEY-------------------------IVWNSKRSKAKGFSFQRA 564

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                   A    +     + + +     + G+ +  K   +     +      S   +A
Sbjct: 565 YGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNL----IPSKMYIA 620

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +     +  +    +   P  +R      +           QL    T         VQ 
Sbjct: 621 SSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSST---TTKNYPVQG 677

Query: 605 ISRDILCEGMKNA----TKNG-----YDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654
              + +   M          G       IV TVHD    +  P+    S+  L + M + 
Sbjct: 678 TGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACMEEA 737



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 58/263 (22%), Gaps = 26/263 (9%)

Query: 4   LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L  D+ET        K   +             +W +             +P D  + + 
Sbjct: 19  LAWDLETGTRTLHKRKASPFDVQNDIWAVGFGRSWQESKGYH-KAVHG--IPEDWFRVIL 75

Query: 63  DETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNGLP------SSL 109
           +   + V  N  F+ +   +        +       +     +              +S+
Sbjct: 76  NNCRVLVGFNIKFDLLYALRDKANHAAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIASM 135

Query: 110 KNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRD 166
            +       S    K    K+                 D             G       
Sbjct: 136 DDVAPLYGGSC---KDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNTANIFK 192

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
            +      +  I          L        G  +D+    ++++ +  +   L E + K
Sbjct: 193 GQLKLVKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLSEQVNK 252

Query: 227 LTDGIIR---SSRQTYALRMYLF 246
                +    +          LF
Sbjct: 253 GLPEDLPFEFNWASPKQRSALLF 275


>gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/371 (12%), Positives = 95/371 (25%), Gaps = 93/371 (25%)

Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           + TGR        Q +P+  +    ++          T  +        +R     + G 
Sbjct: 544 TSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPE------WTMRHLYGPAPGC 597

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGK 433
            L+  D   +E RVLA ++G++  I+  ++  D+              ++V    R   K
Sbjct: 598 VLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDEQVPPHLRETVK 657

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           V+   L Y  G    K                           + +              
Sbjct: 658 VVVYGLFYGMGLATMKE--------------------------RVKILMDSAHSVPSSQR 691

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
                     + + +A+  ++    +             +         +++      RR
Sbjct: 692 KIT------ADTLLRAFHQRYPAAGKFLTRARIRAFHEARCVTLTGINDLSSEKDGNRRR 745

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                 I+                                         Q  S  +    
Sbjct: 746 QHSIARIL-----------------------------------------QGSSSTLFQSA 764

Query: 614 MKNATKNGYDIV-----------LTVHDEIVSETPDTPYFSVG-TLCSLM-TKNPSWAKG 660
           M    +  +DIV           L +HDE++    +     V   +  +M  +   ++  
Sbjct: 765 MVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGIMVEQAQVFSLR 824

Query: 661 LPLKAEGYEAK 671
           +PL+      K
Sbjct: 825 VPLRVSVKVGK 835


>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 481

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 26/137 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET +   +           A +   ++A  +                       +
Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
            + L   L DE+   V  N  ++  +  +  G+++   R   T + +           + 
Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464

Query: 111 NAC-LALNFSEHLTKME 126
           +     L  S    +  
Sbjct: 465 SLALRFLQHSCISFEQV 481


>gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
 gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
          Length = 587

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/522 (13%), Positives = 120/522 (22%), Gaps = 152/522 (29%)

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIAQ- 215
           L     ++   A      RL  L   E    L+ Q +N  G   D      +L   + + 
Sbjct: 150 LAEHRAQQACLAEARDGGRLALLCHAESVGGLIAQELNHAGVPFDASVHHAQLTTALGEA 209

Query: 216 --------ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
                       L   I +  D    +      L   L    G+++    +         
Sbjct: 210 DRHGGRPARMAALVARIRETLDAPGLNPDSAPTLVAALR-RAGLEVTSTRKW------EL 262

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
             +     + +L   A +        +       DGR R      G   TGRW+      
Sbjct: 263 RGLDHPVIEPLLEYKALARLYTANGWSWMRHWVRDGRFRPDWV-AGGVVTGRWASRGGGA 321

Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
             LP+                               +RS + A  G +LVVAD A +E R
Sbjct: 322 LQLPQ------------------------------QIRSAVRAEPGWRLVVADAAQLEPR 351

Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
           VLA ++ +    +A A G+                    + RA  KV  L   Y   +  
Sbjct: 352 VLAAMSQDGAMARAAAAGDLYQGLVDEGVV---------DTRAHAKVAMLGAMYGATSG- 401

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                                      + +A                    +G       
Sbjct: 402 ---------------EAGALMARLRRAYPRAMGWVDAAAAAGERGERVSTWLGR------ 440

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                        W++                                            
Sbjct: 441 -----TSPAPPAFWREAQAAAQ-------------------------------------- 457

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM--KN--------- 616
                     +    A S     R +G      +VQ  + +     M             
Sbjct: 458 ----HPDASPAAERRAHSA---AREWGRFTRNFVVQGTAAEWALCWMGFLRRGLDDLHGP 510

Query: 617 ------------ATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                        T +  ++V  +HDE++   P+     V  
Sbjct: 511 GGMREGDGGPGGLTASRPELVYFLHDEVIVHAPEEFADEVAE 552


>gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 683

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 70/561 (12%), Positives = 128/561 (22%), Gaps = 152/561 (27%)

Query: 70  AHN-SLFERILFKK-TLGIDIPSKRWICTSVLARTNGL---------------------P 106
            HN   ++  + +K   G  +     I T V  R                          
Sbjct: 61  GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 120

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165
            SL+     L              +   +                  ++  Q   +YC +
Sbjct: 121 HSLEAWGYRLRL------------MKGEYATEFKARMGDAYVDGMEWLEFSQEMLDYCVQ 168

Query: 166 DVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----- 214
           DV  T  L+KR+            E  +  L       G+  + +    L   +A     
Sbjct: 169 DVVVTSALWKRILGKNYSPRALALEHRVAWLMAAQERNGFHFNREKAAILYAKLAQRRGD 228

Query: 215 ------------------------------------QERKKLDEDIVKLTDGII------ 232
                                               + R KL         G        
Sbjct: 229 LERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFTQVGWFEKYTEG 288

Query: 233 ----------RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278
                      +      +   L  + G      ++         ++S  N       L+
Sbjct: 289 TRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLNYPP--CKLL 346

Query: 279 LNRLASSGSAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
              L  +               V   GR+ G++   GA  TGR +        +P     
Sbjct: 347 TEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGA-ATGRATHAYPNVAQVP----- 400

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-- 394
                                       R      +G  LV AD +G+E R LA      
Sbjct: 401 ------------------ASGSPYGIDCRELFTVPHGWLLVGADASGLELRCLAHFMARY 442

Query: 395 -----EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
                 D  +    +  ++             + + K  R   K    A  Y  G +   
Sbjct: 443 DGGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVG 502

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           T     G+  +  +  +      + +   + +      +     +K              
Sbjct: 503 T--IVYGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKLKAT------------ 548

Query: 510 WRAKHQGVLQLWKDLTEGFAC 530
           +  K   + +L K + E    
Sbjct: 549 FLRKTPALKKLVKAVKEAAKR 569


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           QR   K +   L Y               L++ +          FE +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           QR   K +   L Y               L++ +          FE +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri]
          Length = 144

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I K   G   +   T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHKQAGGPF-NIASTKELQKILFDNLKLRIVKKT 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338
           A  TGR S      QN+P ++R   
Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144


>gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans]
 gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans]
 gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1]
 gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans]
 gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans]
 gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans]
 gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans]
 gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans]
 gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans]
 gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans]
 gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans]
 gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans]
 gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans]
 gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans]
 gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans]
 gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans]
 gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans]
 gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans]
 gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans]
          Length = 144

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G   +   T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDDLKLRIVKKT 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338
           A  TGR S      QN+P ++R   
Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144


>gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei]
 gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei]
 gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei]
 gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei]
 gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei]
 gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 68/253 (26%), Gaps = 38/253 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108
           + ++L D         +  +  +F           LG+ +P   +    + +       +
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59

Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +           +      +    K    +  +       +            LF   
Sbjct: 60  SNDLGKIAEDHDYHDLPRD--EDIYDKGAKRQVPEDDKLFGQFARKSN------ALFALR 111

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                +  ++    L   +D E  L  +   +  +G  ++   +  +    +Q  K L+E
Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279
            I         +      L   LF    + ++  ++    T   +L+           IL
Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 280 NRLASSGSAILKL 292
           +    +      +
Sbjct: 229 DYRGWAKLNSTYV 241


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            IA     +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           QR   K +   L Y               L++ +          FE +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114


>gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 117/449 (26%), Gaps = 82/449 (18%)

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T VL+R       + +        +    +    +L A   + S     YD       +
Sbjct: 1   DTLVLSRLVWSDLKVNDFRYIEKNPDFPRNLIGSHSLKAWGLRLSNLKDDYDGGWDTWSK 60

Query: 155 AWQLFGEYCKRDVEATRELFKRLI------PLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
                 +YC++D +A   L+K+++           E +   + +     G+  D +   +
Sbjct: 61  D---MQDYCEQDCQANWTLYKKIMSKRPSADSVRLEHEFAAVIRKQERIGFNFDTNKANQ 117

Query: 209 LQELIAQERKKLDEDIV-----------------------------KLTDGIIRSSRQTY 239
           L   +   + +L+  +                                   I+ +     
Sbjct: 118 LLAKLQGRQAELEAKLQTAFPPWEIKTPFTPKVNNKSRGYVKGVLTYKVKEIVFNPASRD 177

Query: 240 ALRMYLFL----ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI--LKLN 293
            +   L         +          +++L   +    A  L  + L +    I    +N
Sbjct: 178 HIADRLQKLRCWKPELMTDQGKPKVDEAVLKTLDYP-EASILNEDLLINKRIGILATGVN 236

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
              + V   G++ G +   GA  TGR +         P                      
Sbjct: 237 GWLKMV-KGGKIHGRVNTNGA-ATGRCTHSKPNVAQTP---------------------- 272

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                      R    A  G  LV ADL+G+E R LA        +  F +G    V   
Sbjct: 273 -SVGAAYGRECRELFHAPEGYSLVGADLSGLELRCLAHY------MARFDSGSYADVVVN 325

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                          R   K       Y  G     ++     +D  +       +   +
Sbjct: 326 GDIHTLNQKSAGLPTRNNAKTFIYGFLYGAGPAKIGSI-----VDGSEKEGRKLISKFMK 380

Query: 474 DWEQAESHHLWMQDQYPEF-AVKDKLIGT 501
                +     + +   +       L G 
Sbjct: 381 ATPAIKLLRTAVSEVVKKNGGYLKGLDGR 409


>gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 105

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
                +Q  + DI+   M    K          ++L VHDE++ E P      +G L   
Sbjct: 20  AMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPK 79

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           +M    S A  +PLK E +    +
Sbjct: 80  IMDSAVSLA--VPLKVESHYGPTW 101


>gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
 gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
          Length = 1312

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/460 (10%), Positives = 105/460 (22%), Gaps = 130/460 (28%)

Query: 200  RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVD 255
            ++    + +L   +  E K ++    K      +       LR  LF    +        
Sbjct: 762  KLQRKNLWELFINLEDEIKDVERQCYKKAGHPFQ-ITSHIQLRQVLFDELKLDELCPGQK 820

Query: 256  MS-------EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308
            ++       + T + +L          +L+L                             
Sbjct: 821  LARTNVQNLKSTSEMVLHKLKDLHPLPELVLTHRQ------------------------- 855

Query: 309  LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
                               QN+P+Q                  +   P       +R   
Sbjct: 856  -----------------NIQNIPKQPLQVHKDANGSVVNESTVSSTAPATTL--WMREPF 896

Query: 369  IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY--AKAFNTPIDKVSK 426
             +  G   + AD   IE R+LA ++ +   +K F +     +      +     ++ V  
Sbjct: 897  FSHEGWSFIAADFQSIELRILAHLSQDAVLLKVFNDAGSTDIFVQLTCEWLGLNLEDVKT 956

Query: 427  EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
              R   K +  ++ Y  GA+          L+  + +    + S    ++   +      
Sbjct: 957  GDRERTKRIVYSVIYGVGAERLAET-----LNDTKENAKAFTKSFLVKFKGVNTFAQRCI 1011

Query: 487  DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
             +         +                  +      +               +      
Sbjct: 1012 SECQRHGHVKTIFHR---------HRLISNISSQNFHVRSHAERQAVNFVIQGSAADIC- 1061

Query: 547  PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                                +L    +    S  NT  ++L             +VQ   
Sbjct: 1062 --------------------KLAMIHIMTVLSERNTVRARL-------------LVQ--- 1085

Query: 607  RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                                 +HDE++ E  D     V  
Sbjct: 1086 ---------------------IHDELLFEVHDEDINEVKA 1104


>gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1627

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 116/426 (27%), Gaps = 105/426 (24%)

Query: 273  LAKDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              K L   R       + +   L  AV  +   R+ G L  +  + TGR S      QN+
Sbjct: 1275 FFKALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGEL-CHTVTATGRLSSQSPNLQNI 1333

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK---LVVADLAGIEAR 387
            PR+E                             +R  I++  G++   ++ AD + +E  
Sbjct: 1334 PREED----------------------------LRRLIVSRFGRREGRMIEADYSQLEVV 1365

Query: 388  VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
            VLA ++ +   ++   +  D +    +     P +                         
Sbjct: 1366 VLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------------------ 1401

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                     +  +   +            +  S            A    L     E + 
Sbjct: 1402 ---------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLI 1452

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR---HKRDVHIVLPS 564
             A    ++ + + ++ + +           +     A     + R     +   + V+P+
Sbjct: 1453 SAEEQHYKDLSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPT 1512

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617
              +  ++  K                     +L    VQ ++ +I+              
Sbjct: 1513 GSKFDFAKDKKSI-----------------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEK 1555

Query: 618  --TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--------PSWAKGLPLKAE 666
                    +V TVHD +  +   +    V   +  +M+          P     +P  A+
Sbjct: 1556 RNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1615

Query: 667  GYEAKR 672
             +    
Sbjct: 1616 VHIGPS 1621


>gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1499

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 116/426 (27%), Gaps = 105/426 (24%)

Query: 273  LAKDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              K L   R       + +   L  AV  +   R+ G L  +  + TGR S      QN+
Sbjct: 1147 FFKALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGEL-CHTVTATGRLSSQSPNLQNI 1205

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK---LVVADLAGIEAR 387
            PR+E                             +R  I++  G++   ++ AD + +E  
Sbjct: 1206 PREED----------------------------LRRLIVSRFGRREGRMIEADYSQLEVV 1237

Query: 388  VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447
            VLA ++ +   ++   +  D +    +     P +                         
Sbjct: 1238 VLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------------------ 1273

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
                     +  +   +            +  S            A    L     E + 
Sbjct: 1274 ---------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLI 1324

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR---HKRDVHIVLPS 564
             A    ++ + + ++ + +           +     A     + R     +   + V+P+
Sbjct: 1325 SAEEQHYKDLSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPT 1384

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617
              +  ++  K                     +L    VQ ++ +I+              
Sbjct: 1385 GSKFDFAKDKKSI-----------------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEK 1427

Query: 618  --TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--------PSWAKGLPLKAE 666
                    +V TVHD +  +   +    V   +  +M+          P     +P  A+
Sbjct: 1428 RNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1487

Query: 667  GYEAKR 672
             +    
Sbjct: 1488 VHIGPS 1493


>gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 977

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 107/422 (25%), Gaps = 122/422 (28%)

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           +  D  L         + TGR    +   QNLP+Q          + A     +      
Sbjct: 604 IHPDWALHN-------TSTGRIFSALPNVQNLPKQPPRTAFPIHALSATQDRSSNGGGDE 656

Query: 359 LASD-----------------------------------------CVRSCIIASNGKKLV 377
                                                         +R    A  G  LV
Sbjct: 657 SLRPYGYVDSPTEEDVDRWLSLAEAGVIDQASSAQFLLFPEHPQWTLRHLYCAPPGCVLV 716

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436
             D   +E R+LA ++G+    +  ++  D+     A     P ID V  EQR   KV+ 
Sbjct: 717 SFDFNQLELRLLAHLSGDSALQEHLSSNVDVLALVTASVLRLPSIDHVRPEQRQAVKVIV 776

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
             L Y  G ++          +     Q  +        E A S                
Sbjct: 777 YGLLYGMGPELMDVRIRKINEEFATAEQQQQHDR-----EGAASSSDPESASAR------ 825

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                    + + +   +  V    ++  +                            + 
Sbjct: 826 --------DLLRRFYHAYPRVESYLRETRQEA--------------------------QN 851

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
            + +   S R+ + ++   +                         VQ  + D+L   M+ 
Sbjct: 852 SLVVETLSGRKTLLAETDANRRKQRAIAQA---------------VQGGAADVLHSAMRA 896

Query: 617 AT-----------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPL 663
                             +V+++HDE+V  TP       V  +  ++  +       +PL
Sbjct: 897 VHQQRHSFLPYLPAAPLALVMSIHDELVYATPRVAIDEVVRGVQRILEDQARVLRLAVPL 956

Query: 664 KA 665
             
Sbjct: 957 PV 958


>gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440]
 gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440]
          Length = 695

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 69/561 (12%), Positives = 127/561 (22%), Gaps = 152/561 (27%)

Query: 70  AHN-SLFERILFKK-TLGIDIPSKRWICTSVLARTNGL---------------------P 106
            HN   ++  + +K   G  +     I T V  R                          
Sbjct: 73  GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 132

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165
            SL+     L              +   +                  ++  Q   +YC +
Sbjct: 133 HSLEAWGYRLRL------------MKGEYATEFKARMGDAYVDGMEWLEFSQEMLDYCVQ 180

Query: 166 DVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----- 214
           DV  T  L+KR+            E  +  L       G+  + +    L   +A     
Sbjct: 181 DVVVTSALWKRILGKNYSARALALEHRVAWLMAAQERNGFHFNREKAALLYAKLAQRRGD 240

Query: 215 ------------------------------------QERKKLDEDIVKLTDGII------ 232
                                               + R KL         G        
Sbjct: 241 LERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFNQVGWFEKYTEG 300

Query: 233 ----------RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278
                      +      +   L  + G      ++         ++S  +       L+
Sbjct: 301 VRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLSYPP--CKLL 358

Query: 279 LNRLASSGSAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
              L  +               V   GR+ G++   GA  TGR +        +P     
Sbjct: 359 TEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGA-ATGRATHAYPNVAQVP----- 412

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-- 394
                                       R       G  LV AD +G+E R LA      
Sbjct: 413 ------------------ASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARY 454

Query: 395 -----EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
                 D  +    +  ++             + + K  R   K    A  Y  G +   
Sbjct: 455 DGGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVG 514

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           T     G+  +  +  +      + +   + +      +     +K              
Sbjct: 515 T--IVFGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKLKAT------------ 560

Query: 510 WRAKHQGVLQLWKDLTEGFAC 530
           +  K   + +L K + E    
Sbjct: 561 FLRKTPALKKLVKAVKEAAKR 581


>gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 125

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 15/125 (12%)

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
               +     R   ++    D +      +   RE           +Q  + D++ + M 
Sbjct: 1   ERGRLQTILGRWRAFNLDGRDVNSTYQGRTMAAREAI------NYEIQGSAADLIKKAML 54

Query: 616 ------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668
                  A +    ++LTVHDE+V E P      +  L    MT        +PLK +  
Sbjct: 55  GAHARMAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSAIK--LDVPLKVDVA 112

Query: 669 EAKRY 673
               +
Sbjct: 113 AGPNW 117


>gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 143

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            V A T GLP SLK+    LN      KM+EGK LI  FC    +S       ++    W
Sbjct: 1   MVWAATLGLPLSLKDVGKVLNLDAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGW 56

Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           +LF  Y  RDV+    + ++L   P+ +   + + +DQ INDRG RID  L      +  
Sbjct: 57  KLFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDE 116

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           + R +      KLT   + +      L+ 
Sbjct: 117 KHRAQALARAHKLTG--LDNPASPLQLQE 143


>gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
 gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans]
 gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis]
 gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae]
 gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
 gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi]
 gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
          Length = 144

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G   +   T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKT 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338
           A  TGR S      QN+P ++R   
Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144


>gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 134

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 18/139 (12%)

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
            V +  R V+ + ++D +      RR    D+  D   L     +               
Sbjct: 2   GVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERA---------ALNAP 52

Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654
           +Q  + DI+   M +             ++L VHDE++ E P          L   M + 
Sbjct: 53  IQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRA 112

Query: 655 PSWAKGLPLKAEGYEAKRY 673
                 +PL       + +
Sbjct: 113 AE--LSVPLDVHVGRGRSW 129



 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 4/58 (6%), Positives = 11/58 (18%), Gaps = 9/58 (15%)

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534
               +   +  Q  +      + G          R     +    + L +        
Sbjct: 2   GVRDYLRDVVAQARQDGYTSTIEGR---------RRYLPDLSSDNRQLRDMAERAALN 50


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/472 (14%), Positives = 115/472 (24%), Gaps = 137/472 (29%)

Query: 95  CTSVLARTNGLP----SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            T VL+           SLK       N         EG                     
Sbjct: 1   DTLVLSSLANPSLEGGHSLKAWGERIHNLKG----DYEG--------------------- 35

Query: 150 ANHVQAWQLFGE----YCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDR 197
                 W+ F      YC++DV   ++L++RL    +         E  +  +       
Sbjct: 36  -----GWETFNPEMLAYCQQDVRLLKDLYRRLEVQLEDFDEASIELEHKVAEIIYRQEQT 90

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVK------------------------------- 226
           G   D     +L   + ++  ++  ++ +                               
Sbjct: 91  GVLFDERKGYELLAELKEKVHEIVLEVREVFKPLPVWKSLQVLKNPLKKDGNPSVAYQKQ 150

Query: 227 --------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL---KSILSHSN 269
                           D    +      +  YL            +G++   + +L+  +
Sbjct: 151 LDRGAHYDSDGDWGYKDYPEFNLGSRQQVSRYLQHFGWSPTEWTDKGSVIVNEKVLADVD 210

Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
           I   AK ++     S    +  +    EAV  DGR+ G +   GA  TGR +        
Sbjct: 211 IP-EAKMIMEYFTISKR--VAMVKAWLEAVGDDGRIHGRVNSCGA-VTGRMTHSKPNLAQ 266

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P                              +  R   I   GK LV  D +G+E R+L
Sbjct: 267 VP-----------------------AIYSPYGEECRELWIVPEGKCLVGIDASGLELRML 303

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           A    +                               + R   K    A  Y GG     
Sbjct: 304 AHYMNDKD---------YTDEILNGDIHTANQLAAGLQSRDQAKTFIYAFLYGGGDGKIG 354

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
            +      D Q+        +       A        D+         L G 
Sbjct: 355 EIVGGKAKDGQRLKAKFLDNTP------ALRELRGEVDRGSSKGWMKGLDGR 400


>gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 92

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 4  LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
          LF D+ET S  P+   G   YAE A I L AYA++   VK+WD TE   MP+DL  Y   
Sbjct: 5  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63

Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPS 90
            ++ V HN  +F+ ++ K  L ID+P 
Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPL 91


>gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/462 (13%), Positives = 118/462 (25%), Gaps = 119/462 (25%)

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T VL+R                 S      + G   I                 ++++ 
Sbjct: 1   DTLVLSRLFNPN-------REGGHSXXXRGYKLGYHKIDF---------------SDYLN 38

Query: 155 AWQLFGEYCKRDVEATRELFKRLIP--------LSDGERDLWLLDQTINDRGYRIDLDLV 206
             +   +YC RDV+    + K+L              E+ +  + +     G++ DL   
Sbjct: 39  YSKEMLDYCVRDVQLNAVVLKKLREESRGFSKQCIAIEQGVARIMKQQEVNGFKFDLQSA 98

Query: 207 LKLQELIAQERKKLDEDIVKLTDGII---------------------------------- 232
           L L   + ++++ +++++                                          
Sbjct: 99  LLLLAKLREKKQSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDDEYQRCLDTNN 158

Query: 233 -----------RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLI 278
                       +      +  YL                   +  LS       A  LI
Sbjct: 159 FEPFMRQTLQDFNLGSRKQIGEYLIDFGWKPERFTPTGQPIVDEKTLSAITHIHEA-KLI 217

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
            + L      I ++++  E V  DGR+ G +   GA  TGR +        +P       
Sbjct: 218 ADFLLLQKR-IAQVDSWVEGVQEDGRVHGFVIPNGA-ITGRMTHRNPNVAQVP------- 268

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                                     R+C     G  L+  D +G+E R+LA    ++  
Sbjct: 269 ----------------AVYSPYGKECRACWTVEEGNVLIGVDASGLEIRMLAHYMNDEE- 311

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
                                       E R   K    AL Y  G +   ++     + 
Sbjct: 312 --------YTNEILNGDIHTANQKLAKLESRDKAKTFIYALMYGAGDEKLGSV-----VG 358

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                        F++    +S       +       + L+G
Sbjct: 359 GSTSDGKRARQYFFDNKPTFKS-LRDRVQRASALDYVEHLVG 399


>gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
          Length = 144

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G   +   T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKT 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELIGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338
           A  TGR S      QN+P ++R   
Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144


>gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 95

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
              + +Q  + DI+   M N  K          +V+ VHDE++ + P     ++  +  S
Sbjct: 10  AINSPIQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFDVPADELETIXKIVPS 69

Query: 650 LMTKNPSWAKGLPLKAE-GYEAKRY 673
           +M         +PL A+ G+    Y
Sbjct: 70  VMQAAVK--LDVPLVADAGWGHDWY 92


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group]
          Length = 570

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 60/295 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53
             D E  +   + +           +   +           + +    +W D  +    +
Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106
             +   +  D ++  V HN  F+  + +      I    +   T  LAR           
Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392

Query: 107 SSLKNACLALNFSEHLTKM--EEGK-ALIARFCKG-------SIDSPPYDCTRANHVQAW 156
            SL+           + K   + GK ++   F +           +   +  +    +  
Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIND 196
           +L+  Y   D  +T +L++ L    +  E                + W     L   +  
Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246
            G  +D   + ++++    ERK   +   K       D    +      +R   F
Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 567


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I      +V AD + IE R++A ++ +   + AFA G+DI+  T A+ F  P++ V+ E
Sbjct: 1   FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           QR   K +   L Y               L++ +          FE +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
 gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
          Length = 196

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 46/204 (22%)

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           + +       + A    +     +    ++  +  GV +      E           +  
Sbjct: 21  YSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRFTHKCKEECKAKGHVRTILKR 80

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
            R+                            ++K    +L +   Q  R+          
Sbjct: 81  WRLI--------------------------PNIKSPNFFLRS---QAERQA------VNF 105

Query: 601 IVQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LM-T 652
           +VQ  + DI    M        + G    +++ +HDE+V E  D    SV  +   +M +
Sbjct: 106 VVQGSAADICKLAMILVGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKGVVRDIMQS 165

Query: 653 KNP---SWAKGLPLKAEGYEAKRY 673
                      +PL+      K +
Sbjct: 166 DALLGGQIKLQVPLRVSVSVGKSW 189


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/354 (10%), Positives = 91/354 (25%), Gaps = 70/354 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVK-LWD-RTEQSAMPSD 56
             D E      +             IT  +        + D   +   D       +   
Sbjct: 635 ACDTEVT-EIDVKNESP---VGHGRITCFSIYCGPTADFGDGKNRLWIDVLDGGEDVLKV 690

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGL-------PSS 108
             +Y    ++  V HN  F++ +  +     I  + +   T  LAR             S
Sbjct: 691 FKRYFESPSIKKVWHNYSFDKHVLGRH---GIHPQGFHADTIHLARLYDSARRGAKGGYS 747

Query: 109 LKNACL-------ALNFSE----------HLTKMEEGKALIARFCKGSI-DSPPYDCTRA 150
           L+            +  S              K   GKA + +        + P      
Sbjct: 748 LEVLSADEKVMDGYIRHSTEVDESVLAGKKSMKELFGKANLKKDGTPGKIKTIPPVHELQ 807

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL--------------------IPLSDGERDLW-L 189
              +    +  Y   D   T  LF  L                        +     +  
Sbjct: 808 RDEELRDAWIYYSTFDAVCTWRLFLSLQQKLSSTPWNVADLKKKGSMYDFYEKYWRPFGE 867

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERK----KLDEDIVKLTDG-IIRSSRQTYALRMY 244
           +   +   G  +D + +  ++++   +++    +  +   K        +      +R +
Sbjct: 868 VLVQMEADGMLVDCNHLATVEKVAKAQQEISVSRFRKWAAKYCADAAQMNVGSDAQIRQF 927

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
           L+   G       +  +  +    ++      +   +  +  +  + ++ L+  
Sbjct: 928 LY---GGTANRKDKDQVLPMERVFSVPNTDGFIEEGKKVAKKTKPIVISGLANF 978


>gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
          Length = 144

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
           G  +D+    +L     +E + L+ +I +   G   +   T  L+  LF    + +V  +
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKN 60

Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313
           +    T   +L          + +L+    +      ++ L + V+   GR+  +     
Sbjct: 61  QTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338
           A  TGR S      QN+P ++R   
Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144


>gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 932

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 129/525 (24%), Gaps = 73/525 (13%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               + + PL   E  +  L   ++  G  I      +L+  +      +++++ ++   
Sbjct: 435 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 494

Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----------------DMSEGTLKSILSHSNITQL 273
                     L   LF    + L                   ++  T + +L        
Sbjct: 495 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 554

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              LI N  + +      L + +    S                   +    +       
Sbjct: 555 VVPLIQNFRSLAKLRSTYLESTAALSLS----------------SSCALSAPEGAPFKVA 598

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
            +  +   +T +  +  ET     G  +    +C  A         D   +       + 
Sbjct: 599 FKLYDREEETCEPASDSETQTGEEGGKASDTHTCF-AD-----AARDYPALYPTKHPRVF 652

Query: 394 GEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
               + +                       +  ++    G  + +A  Y           
Sbjct: 653 TRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVRE 712

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 +      +               H   ++   +      L            R 
Sbjct: 713 KSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKE-LRDKVKVTCLALIYGSGTCTIARQ 771

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            +         ++   A   +         V++  R ++ + + D  +   + RR    +
Sbjct: 772 MN---------ISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRYVPE 822

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------- 622
            K + S++     +L            + +Q  + DI+   M                  
Sbjct: 823 AKSNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALP 873

Query: 623 -DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK-GLPLKA 665
             ++L+VHDE+V     +    +  +    +         +PL  
Sbjct: 874 PRLLLSVHDELVLHCSLSHLAPLSKMIK--SSLTENMPVDVPLDV 916


>gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 935

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 129/525 (24%), Gaps = 73/525 (13%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               + + PL   E  +  L   ++  G  I      +L+  +      +++++ ++   
Sbjct: 438 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 497

Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----------------DMSEGTLKSILSHSNITQL 273
                     L   LF    + L                   ++  T + +L        
Sbjct: 498 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 557

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              LI N  + +      L +                    S +   +    +       
Sbjct: 558 VVPLIQNFRSLAKLRSTYLES----------------TAALSLSSSCALSAPEGAPFKVA 601

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
            +  +   +T +  +  ET     G  +    +C  A         D   +       + 
Sbjct: 602 FKLYDREEETCEPASDSETQTGEEGGKASDTHTCF-AD-----AARDYPALYPTKHPRVF 655

Query: 394 GEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
               + +                       +  ++    G  + +A  Y           
Sbjct: 656 TRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGE 715

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 +      +               H   ++   +      L            R 
Sbjct: 716 KSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKE-LRDKVKVTCLALIYGSGTCTIARQ 774

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            +         ++   A   +         V++  R ++ + + D  +   + RR    +
Sbjct: 775 MN---------ISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRYVPE 825

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------- 622
            K + S++     +L            + +Q  + DI+   M                  
Sbjct: 826 AKSNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALP 876

Query: 623 -DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK-GLPLKA 665
             ++L+VHDE+V     +    +  +    +         +PL  
Sbjct: 877 PRLLLSVHDELVLHCSLSHLAPLSKMIK--SSLTENMPVDVPLDV 919


>gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 938

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 129/525 (24%), Gaps = 73/525 (13%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               + + PL   E  +  L   ++  G  I      +L+  +      +++++ ++   
Sbjct: 441 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 500

Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----------------DMSEGTLKSILSHSNITQL 273
                     L   LF    + L                   ++  T + +L        
Sbjct: 501 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 560

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
              LI N  + +      L +                    S +   +    +       
Sbjct: 561 VVPLIQNFRSLAKLRSTYLES----------------TAALSLSSSCALSAPEGAPFKVA 604

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
            +  +   +T +  +  ET     G  +    +C  A         D   +       + 
Sbjct: 605 FKLYDREEETCEPASDSETQTGEEGGKASDTHTCF-AD-----AARDYPALYPTKHPRVF 658

Query: 394 GEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
               + +                       +  ++    G  + +A  Y           
Sbjct: 659 TRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGE 718

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
                 +      +               H   ++   +      L            R 
Sbjct: 719 KSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKE-LRDKVKVTCLALIYGSGTCTIARQ 777

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
            +         ++   A   +         V++  R ++ + + D  +   + RR    +
Sbjct: 778 MN---------ISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRYVPE 828

Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------- 622
            K + S++     +L            + +Q  + DI+   M                  
Sbjct: 829 AKSNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALP 879

Query: 623 -DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK-GLPLKA 665
             ++L+VHDE+V     +    +  +    +         +PL  
Sbjct: 880 PRLLLSVHDELVLHCSLSHLAPLSKMIK--SSLTENMPVDVPLDV 922


>gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
 gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
          Length = 585

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 105/430 (24%), Gaps = 128/430 (29%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            + L   +    D    +      L   L   +G+D+   S+  L+           A  
Sbjct: 220 LEALAAQVRDALDVPTLNPDSQPDLLRALR-RSGLDVTSTSKWELQ------RSEHPAVA 272

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +L                 +   +DGR R      G   TGRW+        LP+    
Sbjct: 273 PLLEYKKLYRLLSANGWAWMDQWVTDGRFRAEWVPGGV-VTGRWATRGGGALQLPKG--- 328

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +RS + A +G  LV+AD A +E R+LA ++G+D
Sbjct: 329 ---------------------------IRSAVRADDGWLLVIADAAQLEPRILAAMSGDD 361

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             + A A G+       A            + RA  KV  LA  Y               
Sbjct: 362 AMVAAGARGDLYAGLVEAGVV---------DTRAHAKVAMLAALYGATTG---------- 402

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                    +        + +A               V    +G +     +AW      
Sbjct: 403 ------QAAMLVPRLARAYPRAVGLVDAAARVGENGGVVSTWLGRSSVPPGEAWH----- 451

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                               +                                      +
Sbjct: 452 ----------AAQSAASAPDAT----------------------------------PDDE 467

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------DIVLT 627
                       R R +G      +VQ  + +     M    +             +   
Sbjct: 468 RRAR-------SRARDWGRFTRNFVVQGTAAEWALCWMAALRRRLASLEGDAGVPRLAFF 520

Query: 628 VHDEIVSETP 637
           +HDE++  TP
Sbjct: 521 LHDELIVHTP 530


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/438 (14%), Positives = 110/438 (25%), Gaps = 112/438 (25%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +    L   I     G   +   + ++   L    GI++    +     +L   +   +A
Sbjct: 205 KALVDLAAKISAALGGRPVNPDSSASVVRAL-AREGIEVPAARK----YLLQDIDHPAVA 259

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L     S           +   +DGR R      G   +GRW+        +PR  
Sbjct: 260 P--LLEYKELSRLHSANGWAWLDEWVTDGRFRPHYV-VGGVVSGRWATRGGGALQIPR-- 314

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +RSC  A  G KLVVAD A +E RVL  ++ 
Sbjct: 315 ----------------------------ALRSCASADPGWKLVVADGAQLEPRVLTALS- 345

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
                                                            G +    +A+ 
Sbjct: 346 -------------------------------------------------GDRRLAEVAAA 356

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
             L  +        T                       A+     G     +    R + 
Sbjct: 357 TDLYARLAEALFSGTRYVPLRPGDTRDDRSRAKIAMLSAMYGGTSG-EAGPLLALLRQRF 415

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
              +     +    A   + G  + +R     P               PS+     +   
Sbjct: 416 PDAVSY---VERAAA-AGERGERVRSRLGRTSPA--------------PSAAWRALTGGL 457

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDE 631
            +     T   +  R  ++G      +VQA + D+    +            +V  +HDE
Sbjct: 458 TEDEATETRARRASR--SWGRFTRNFVVQASAADLTAVLLATLRGRLPDPAHLVFFLHDE 515

Query: 632 IVSETPDTPYFSVGTLCS 649
           ++   P      V  +  
Sbjct: 516 VIVHAPAELADEVAEIVE 533


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657
            ENI QA +RD+L   M    K GY+IVLTVHDEI+SE PDTP FS   L  L++ N  W
Sbjct: 246 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 305

Query: 658 AKGLPLKAEGYEAKRYRK 675
           A  LPL A G+E  RYRK
Sbjct: 306 AWDLPLSANGFETYRYRK 323


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/506 (9%), Positives = 108/506 (21%), Gaps = 115/506 (22%)

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLS------ 181
                   + +     +        +L   Y   D +A R ++     +L   +      
Sbjct: 462 NKYKNVKDVINDVDGNSFNYDWIPLELMHPYASGDTDACRRIYCDVINKLKEQNRPKALE 521

Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT---------- 228
                   L      I   G   D + +  + +  + E  K+++ +              
Sbjct: 522 LLTKSYPRLTRTLARIQSNGMYTDTEYLYMIDDKYSNELDKIEQKLRSHWVIKEFEDTRY 581

Query: 229 -------------------------DGIIRS------SRQTYALRMYLF----------- 246
                                        ++                LF           
Sbjct: 582 DLYMAGVEEFESNPPKERNKSITQYRDKFKNGGWKFKPSSGAHKGEVLFSILGISLPYEK 641

Query: 247 --------------LITGIDLVDMSEGTLKSIL---SHSNITQLAKDLILNRLASSGSAI 289
                              +    ++ T+  I+              L+           
Sbjct: 642 EFVKDKPFTKGVKEDKLTWEDYKTNKSTIDYIIDNIELKKDCIDVVVLMKKYAELQTKRN 701

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L   V+ +            + + R S      Q LP                  
Sbjct: 702 SFTKKLPNLVNKETSTLHGNFNSTGTASARLSSSAPNLQQLPSHT--------------- 746

Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                         V+    +      +   D + IE +++     +   +++F  GEDI
Sbjct: 747 ---SDVNKFDYHYPVKRAFKSRYKNGIMTELDFSAIEMKIIGLYTKDPEMLESFLKGEDI 803

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
           + +T +  +N P++ ++ E+R   K +   + Y      F         ++         
Sbjct: 804 HKSTASIVYNKPVEDITAEERQNTKKVNFGIAYGESPFSFSGKN-----NMTVEEAEEIF 858

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528
              F      ++      D   +    + + G    +         +      K      
Sbjct: 859 NKYFNTKPSVKNSIDATHDFVQKHGYVEAMQGHQRFI---------RDAQSSDKKKRNQA 909

Query: 529 ACVVQEGGSISARRVANVPRLVMRRH 554
                     S         L     
Sbjct: 910 LRQSFNTIIQSTAGYLTNMALTFIDD 935



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 31/211 (14%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----------TEQSAMPS 55
           D+ET S  P  K             + + +W +                    +   + +
Sbjct: 215 DLETNSLSPEKKGSKP--------LVLSMSWKNGQGVTIPLYKSDFTWENGQQDIDEILA 266

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L +++  +  + VAHN  ++      +            T V      +         +
Sbjct: 267 MLKEWVASKEDIKVAHNGQYDINFLMSSQNFT-EFNEHQDTKV-GWYLAVTQ---EEAES 321

Query: 116 LNFSEHLTK-------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L  S+   +        +  +     F +  +                 +  EY  +  +
Sbjct: 322 LKLSDISYEVTDMGGYDKPLENFKKWFIQDLLKYLSDALNERKKENKKPVKKEYDIKAPD 381

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
               +  +L    D +     L  +  ++ Y
Sbjct: 382 YDSWIKGKLQEPVDLDNHDIKLKVSEEEKVY 412


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 128/505 (25%), Gaps = 140/505 (27%)

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ------- 215
            ++D  A      RL  L   E    L+   +   G     +    L   +         
Sbjct: 150 AQQDAVAASANPGRLRLLLAAESVGALIAAEMRFAGLPYSAERHDALLTDLLGPRPAYGG 209

Query: 216 --ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
               + L   I    D    +     AL   L    G+ +   S   L+ +         
Sbjct: 210 PVVLEDLAAQIRAALDSPDLNPDSPPALLRAL-QRAGLRVSSTSSWELREL------DHP 262

Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             + +L+    +        +  E+   DGR R      G   TGRW+        LP+ 
Sbjct: 263 VIEPLLHYKKLARLLTANGWSWLESWVQDGRFRPDYVPGGV-VTGRWATRGGSALQLPK- 320

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                         +R  ++A  G KLVVAD A +E R+L  +A
Sbjct: 321 -----------------------------QLRGAVVADPGWKLVVADAAQLEPRILTGLA 351

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
            +     A               +   +   +  +RA  KV  L   Y            
Sbjct: 352 QDQRMAAAGRG---------QDLYTGIVSAGAVTERAQAKVAMLGAMYGATTGE------ 396

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                                         G     + +A+   
Sbjct: 397 ---------------------------------------------SGRLMPRLARAFPRA 411

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                     L E  A   + G ++++    + PR               S+     S  
Sbjct: 412 V--------RLVEEAARAGERGEAVTSHLGRSSPRP------GGSWQETQSAASTAESTP 457

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY----------- 622
             +              R +G      +VQA + +     M                   
Sbjct: 458 ADERRARAQ-------ARDWGRFTRNFVVQASAAEWALCWMAELRNRLTALAPGRPLTEA 510

Query: 623 -DIVLTVHDEIVSETPDTPYFSVGT 646
             +V  +HDE++  TPD    +VG 
Sbjct: 511 PHLVYFLHDEVIVHTPDALAEAVGE 535


>gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 156

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 30/169 (17%)

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L  +    K   G                        +        Y   D + T  L
Sbjct: 4   KFLGHTPIPYKDVAGSG---------------RANVTFDLVDIDRATHYAAEDADVTLRL 48

Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +  L P              ER L  +   +  RG  +D  ++ +L   +AQ   +L+++
Sbjct: 49  WLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDE 108

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS 268
           I     G   +      L   LF   G+     ++     T  S+L   
Sbjct: 109 IY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDL 156


>gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1628

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 117/417 (28%), Gaps = 106/417 (25%)

Query: 276  DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L   R       + +   L  AV      R+ G L     + TGR S      QN+P++
Sbjct: 1280 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1338

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391
            E                             +R  I++  G +  ++ AD + +E  VLA 
Sbjct: 1339 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1370

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            +  +   ++   +  D +    +     P +    +     KV                 
Sbjct: 1371 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1409

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                        +            +  S            +    L     + +  A  
Sbjct: 1410 ------------KKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEE 1457

Query: 512  AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              ++ + + +    + +  G   +++     ++    N+ R+VM        +V P+  +
Sbjct: 1458 HHYKELSKYYSLVTRCVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEPMYYFVV-PTGSK 1516

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI---LCEGMKN------AT 618
              ++  +                     +L    VQ ++ +I   +C  +          
Sbjct: 1517 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNY 1559

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAE 666
                 +V TVHD +  +   +    V   L  +M           P     +P K E
Sbjct: 1560 GEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVE 1616


>gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1628

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 117/417 (28%), Gaps = 106/417 (25%)

Query: 276  DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L   R       + +   L  AV      R+ G L     + TGR S      QN+P++
Sbjct: 1280 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1338

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391
            E                             +R  I++  G +  ++ AD + +E  VLA 
Sbjct: 1339 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1370

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            +  +   ++   +  D +    +     P +    +     KV                 
Sbjct: 1371 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1409

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                        +            +  S            +    L     + +  A  
Sbjct: 1410 ------------KKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEE 1457

Query: 512  AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              ++ + + +    + +  G   +++     ++    N+ R+VM        +V P+  +
Sbjct: 1458 HHYKELSKYYSLVTRCVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEPMYYFVV-PTGSK 1516

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI---LCEGMKN------AT 618
              ++  +                     +L    VQ ++ +I   +C  +          
Sbjct: 1517 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNY 1559

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAE 666
                 +V TVHD +  +   +    V   L  +M           P     +P K E
Sbjct: 1560 GEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVE 1616


>gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1]
          Length = 797

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/393 (12%), Positives = 106/393 (26%), Gaps = 84/393 (21%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +   V +DG +   L  + ++ T R+S      QNLP+  +S                 
Sbjct: 422 GMLTLVQADGIIHHMLN-HTSTVTARFSSSNPNLQNLPKDGKS----------------- 463

Query: 354 ADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                     V+S  I+  G   K++ +D   +E  + A +      I    +G D++  
Sbjct: 464 ---------LVKSVFISRFGPEGKVIQSDFTALEVYIQAILTDCRQLILDLKDGLDMHCV 514

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             ++A   P ++  +                                     + VK  ST
Sbjct: 515 RVSQAEGIPYEEAYRLCVV---------------------------------EKVKEWST 541

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +  S            A    +     + + +A   ++  + + ++ LT+     
Sbjct: 542 KRTKAKIFSFQRAYGAGAALIAESTGMAREEVDALIEAENTRYPEIEKFYERLTKKIMAN 601

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRE 590
                  +            R+         P  +   Y +    +      A+      
Sbjct: 602 SVPTNKFAQHPDLPHLTCNFRKS----TYQTPDGKLYSYRESPAPEFLAKAPASRGGCTT 657

Query: 591 RTYGGKLTENIVQAISRDILCEGM-KNATKNGYD--------IVLTVHDEIVSETPDT-P 640
                ++   +VQ    +     M                  +V  VHD + ++      
Sbjct: 658 SFSPTEIKNYVVQGGGGEWAKAAMWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVA 717

Query: 641 YFSVGTLCSLMTKNPS-------WAKGLPLKAE 666
                 L + M            W   +P+ ++
Sbjct: 718 LEVAALLHACMEAASEFMEYYFDWEVKVPVPSD 750



 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/270 (7%), Positives = 57/270 (21%), Gaps = 29/270 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MS +  D+ET       +       +   + +  +    E +      +        ++ 
Sbjct: 1   MSYVIWDLETTIRTSFKRKANPFDRDNF-VVMQGFKRFGEKIVGEYFGKNPPPSDWFIKL 59

Query: 61  LRDET-----VMCVAHNSLFERI----------LFKKTLGIDIPSKRWICTSVLARTNG- 104
           +          M V  N  F+ +           + + +             +       
Sbjct: 60  VEPPAPLARPKMLVGLNIKFDLLYALRDPDNHAAWMRYVA---AGGTVWDCQLAEYLLEG 116

Query: 105 -----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   S+                 +         +    +           +   + 
Sbjct: 117 MAPTEHMLSMDEIAPRYG-GNIKFDEVKALWEAGVSTEDIDPALLRRYLCGTETEHGDIG 175

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                   +  R      +          L    +   G  +D++L  +  E +A +   
Sbjct: 176 NTEVIFRGQLARAKASGQVKSIMLNMGSLLCTTEMELNGMAVDVELGRQQAEQLAIDLAA 235

Query: 220 LDEDIVKLTDGIIR---SSRQTYALRMYLF 246
           L  ++       +               +F
Sbjct: 236 LTVELNAFLPSNLPFDFKWSSRVQKSALIF 265


>gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi]
 gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi]
          Length = 1069

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 102/376 (27%), Gaps = 70/376 (18%)

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323
                  +     I     S       +  L + +  +  ++       GAS TGR S  
Sbjct: 674 EKEKENIKQIISNIKLYRESKKLFQNYIENLPKHIQKNTNKIHCNFNQLGAS-TGRLSCD 732

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+  + R    L          +T        +              L+  D   
Sbjct: 733 QPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQN------------LLTFDYKQ 780

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E  V+A+++ +   +K   N +    T          + V+KE R + K +   + Y  
Sbjct: 781 MELFVMAYLSFDSQLLKMLNNSDVFVETAKVLF---NTNDVTKELRRMTKTVIYGILYGQ 837

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                        L + +        + F  +          +           LIG   
Sbjct: 838 SEN-----GLAKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKR 892

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            LV    + K++  + +   +    A +++         + +  +++      +  I   
Sbjct: 893 -LVDPTIKNKYR--ISMNTPIQGCAADIMK-------FALLSCHKILSYFDNPNQDIDTF 942

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
              ++   ++     Y N                            +             
Sbjct: 943 --LKMNNINISLLKKYKNY---------------------------IK---------STK 964

Query: 624 IVLTVHDEIVSETPDT 639
           ++L +HDE++ +  + 
Sbjct: 965 LILQIHDELLFQCDEN 980


>gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei
            gambiense DAL972]
          Length = 1649

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 118/401 (29%), Gaps = 98/401 (24%)

Query: 294  TLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L  AV  + + R   +F +  + TGR S      QN+P+++    I+++  +   R   
Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGR--- 1375

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                                   ++ AD + +E  VLA ++ +   ++   +  D +   
Sbjct: 1376 -----------------------MIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLR 1412

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             +     P + V  + + +     + L                                 
Sbjct: 1413 VSLMTKEPYEDVIHKVKQLKDPHYIQL--------------------------------- 1439

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                +  S            A    L  T    +  A    ++ + + ++ +T+      
Sbjct: 1440 RQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYYRLVTDCVEAGA 1499

Query: 533  QEGGSISARRVANVPRLVMRR---HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                 +      + P  + R     +   + V+P+  +  ++  K               
Sbjct: 1500 DRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKFDFTKDKKAV------------ 1547

Query: 590  ERTYGGKLTENIVQAISRDILCEGMKNA---------TKNGYDIVLTVHDEIVSETPDTP 640
                  +L    VQ ++ +I+                  +   +V TVHD +  +  ++ 
Sbjct: 1548 -----PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHESV 1602

Query: 641  YFS-VGTLCSLMTKN--------PSWAKGLPLKAEGYEAKR 672
                V  + ++M+          P     +P KAE +    
Sbjct: 1603 ADEVVDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643


>gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei]
          Length = 1649

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 118/401 (29%), Gaps = 98/401 (24%)

Query: 294  TLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L  AV  + + R   +F +  + TGR S      QN+P+++    I+++  +   R   
Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGR--- 1375

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                                   ++ AD + +E  VLA ++ +   ++   +  D +   
Sbjct: 1376 -----------------------MIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLR 1412

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             +     P + V  + + +     + L                                 
Sbjct: 1413 VSLMTKEPYEDVIHKVKQLKDPHYIQL--------------------------------- 1439

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                +  S            A    L  T    +  A    ++ + + ++ +T+      
Sbjct: 1440 RQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYYRLVTDCVEAGA 1499

Query: 533  QEGGSISARRVANVPRLVMRR---HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                 +      + P  + R     +   + V+P+  +  ++  K               
Sbjct: 1500 DRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKFDFTKDKKAV------------ 1547

Query: 590  ERTYGGKLTENIVQAISRDILCEGMKNA---------TKNGYDIVLTVHDEIVSETPDTP 640
                  +L    VQ ++ +I+                  +   +V TVHD +  +  ++ 
Sbjct: 1548 -----PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHESV 1602

Query: 641  YFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYEAKR 672
               V   + ++M+          P     +P KAE +    
Sbjct: 1603 ADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643


>gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927]
 gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei]
 gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1649

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 118/401 (29%), Gaps = 98/401 (24%)

Query: 294  TLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
             L  AV  + + R   +F +  + TGR S      QN+P+++    I+++  +   R   
Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGR--- 1375

Query: 353  IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                                   ++ AD + +E  VLA ++ +   ++   +  D +   
Sbjct: 1376 -----------------------MIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLR 1412

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             +     P + V  + + +     + L                                 
Sbjct: 1413 VSLMTKEPYEDVIHKVKQVKDPHYIQL--------------------------------- 1439

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
                +  S            A    L  T    +  A    ++ + + ++ +T+      
Sbjct: 1440 RQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYYRLVTDCVEAGA 1499

Query: 533  QEGGSISARRVANVPRLVMRR---HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
                 +      + P  + R     +   + V+P+  +  ++  K               
Sbjct: 1500 DRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKFDFTKDKKAV------------ 1547

Query: 590  ERTYGGKLTENIVQAISRDILCEGMKNA---------TKNGYDIVLTVHDEIVSETPDTP 640
                  +L    VQ ++ +I+                  +   +V TVHD +  +  ++ 
Sbjct: 1548 -----PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHESV 1602

Query: 641  YFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYEAKR 672
               V   + ++M+          P     +P KAE +    
Sbjct: 1603 ADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643


>gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
 gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
          Length = 634

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 77/545 (14%), Positives = 134/545 (24%), Gaps = 103/545 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDLL 58
           S + +DIE          G+        +     +W               +    +   
Sbjct: 61  STVAVDIE--------AAGLAH--ASFDMRCITLSWYTGTGSEAMTVLIDPRDPHEASFA 110

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTN----GLPSSLKNAC 113
           + +       V HN  ++     +   + +    +   T VLAR           L++  
Sbjct: 111 RRILTTAPALVFHNGAYDVPPLVQHGVMTLDHIVKVWDTIVLARMAYPDKDTSKGLESLA 170

Query: 114 LA---LNFSEH--LTK---MEEGKALIARFCKGSIDSPPYDC--------------TRAN 151
                L         K   +  G      F    ID  PY                   N
Sbjct: 171 GRSDTLGMPPSPGSIKNSYLLAGYKKSDGFMHADIDMLPYRIGAMSDTPITLRMLDKLYN 230

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           +   W     +    V  T +   RLI          L    I   G R+D + +    E
Sbjct: 231 NCVQWLTSSTFEGETVPRTAQDAHRLIEREQITNRAMLRRSAI---GLRVDREYLHTYSE 287

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSIL 265
               ER+     I K       +      +  YL    G+                K   
Sbjct: 288 QTLAEREHAANLIEKTIARE--AVGNGLHVVNYL-DTQGLIPASWPRTPTGRLKADKQAF 344

Query: 266 SHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
              +       LI      + +   +  L          GR+   +   GAS TGR +  
Sbjct: 345 ESLDHP-----LIDAHRKVADTDHILDYLGKTDAMAQITGRVHPQVGILGASATGRMAYS 399

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
             + Q  P + R   +  +                              G   V  D + 
Sbjct: 400 QPELQQFPSEARKIILWDK----------------------------PEG--AVSIDWSS 429

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E  ++A  A +   +  F +                       +R   KV+ LA  Y  
Sbjct: 430 VEPVIMANCARDTEFLAGFNHHGADLYAPIT---------SQGIERKTAKVVMLAAMYGQ 480

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
           G++          L +            FE   + ++    +Q    +        G   
Sbjct: 481 GSRSLAE-----RLGVSVDEAKSLRKKVFEPMPRTDAFMKAIQATSEQHGRIMTADGRML 535

Query: 504 ELVKK 508
            +   
Sbjct: 536 TIPTD 540


>gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum
            JPCM5]
 gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
            infantum JPCM5]
          Length = 1169

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 60/459 (13%), Positives = 108/459 (23%), Gaps = 131/459 (28%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR---------------TGR 319
            +   + R  +    +  L    ++ + DG           SR               TGR
Sbjct: 755  RLHDMFRKVADKLHVCVLEKPRDSAAEDGPAVSDASTAQVSRVCYSMHPNWVLHNKSTGR 814

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD------------------------ 355
                +   QNLP+Q          + A     +  D                        
Sbjct: 815  IFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLA 874

Query: 356  ---------------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                   +R    A  G  L   D   +E R+LA ++G+    +
Sbjct: 875  EAAAVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQE 934

Query: 401  AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
              +   D+     A     P ID V  +QR   KV+   L Y  G +           + 
Sbjct: 935  HLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEF 994

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                Q                            A        A   + + +   +  +  
Sbjct: 995  ATSEQQQH----------------------RGEAASSAPAPMAARDLLRRFHRVYPRIEN 1032

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              ++  +                                 +   S R+            
Sbjct: 1033 YLRETRQEALR--------------------------SFAVETLSGRK--------SLIA 1058

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----------KNGYDIVLTV 628
               A  +  R            VQ  + D+L   M+                   +V+++
Sbjct: 1059 EKDANRRRQRAIAQA-------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSI 1111

Query: 629  HDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPLKA 665
            HDE+V   P       V  +  ++  +       +PL  
Sbjct: 1112 HDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPLPV 1150


>gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1]
 gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax]
          Length = 1221

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/381 (12%), Positives = 105/381 (27%), Gaps = 83/381 (21%)

Query: 278  ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +     S       +  L + +     ++       GAS TGR S      QN+  + R 
Sbjct: 795  VKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGAS-TGRLSCEQPNLQNIHSRFRC 853

Query: 337  EEILTQTIQALNRGETIADPLGLASDCVRSCI----------------------IASNGK 374
               L           +    +       R  +                         +G+
Sbjct: 854  AVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGAPPDGE 913

Query: 375  KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434
             L+  D   +E  V+A+++ +   +K   +G+    T       T   +V+ E R + K 
Sbjct: 914  NLITFDYKQMELFVMAYLSFDVQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMTKT 970

Query: 435  MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
            +   + Y               L + +   +   ++ F+ +          +        
Sbjct: 971  VIYGILYGQTEN-----GLAKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHMNR 1025

Query: 495  KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
               LIG    +++   + K++  + +   +    A V++     +      +      + 
Sbjct: 1026 VYTLIGRKR-VIEPTIKNKYR--ISMNTPIQGCAADVMK----FALLSCFCIMTHGWPQS 1078

Query: 555  KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614
             R + I   S+  L  +      +                                    
Sbjct: 1079 ARLLKINNVSAAVLEENKPFLKAT------------------------------------ 1102

Query: 615  KNATKNGYDIVLTVHDEIVSE 635
                     ++L VHDE++ E
Sbjct: 1103 --------KLILQVHDELLFE 1115


>gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
 gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
          Length = 709

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 107/366 (29%), Gaps = 68/366 (18%)

Query: 167 VEATRELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
           ++ T ELF++            D E        TI+ + +++DL+ +   +  I  E K+
Sbjct: 285 IDKTLELFEKFTKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIESELKE 344

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----------------S 263
           + + I  L+     +    + +   LF    +     S  T                  +
Sbjct: 345 ISDKIYGLSGCKF-NILSPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREFAPTN 403

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
            L   +I     +LI    + S      L +  +   S+G L        ++ TGR S  
Sbjct: 404 SLVLDDINHPIVELIKKFRSLSKLVSNWL-SFDQKSDSEGILHP-WILVLSTATGRISSV 461

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+P                             S  +R   +    K ++  D + 
Sbjct: 462 FPNLQNIPSFN-----------------------DEQSLNIRKFFLPPTKKTMISVDYSQ 498

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E R+LA ++ +          +    +  AK      + V+++ R   K    A  Y  
Sbjct: 499 LELRILAHLSDDKKLKDLCNVDQGDIHSMIAKMI-FNKNNVTEDMRKEAKTNIYATIYGK 557

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
             +         G+ +             + ++   S       +           G   
Sbjct: 558 KVENMS------GISV------------IDIFQGIRSFITNTVIETQNKGFIKTFSGKYR 599

Query: 504 ELVKKA 509
            L    
Sbjct: 600 FLPNIR 605



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
            + + +     +   +    I   S +     +++       +   +  R          
Sbjct: 571 FQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKV---SDKMRDERIS------VN 621

Query: 600 NIVQAISRDILCEGMKNATKN-GYDIVLTVHDEIVSETPDT 639
            I+Q  + D +   + N  K      ++ +HDE + ET + 
Sbjct: 622 TIIQGTAADFVKFALINVIKQTNLIPIIQIHDEWIFETDEE 662


>gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
 gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
          Length = 766

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/464 (11%), Positives = 100/464 (21%), Gaps = 142/464 (30%)

Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307
             G+  + + +                +DL   R   +       + L  +VS +GRL  
Sbjct: 406 DNGLPSISL-KSLSNKGAIALPGIAAWRDLCDARRTLA-----SCDDLIASVSPNGRLHP 459

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
              +   + TGR +                                          +RS 
Sbjct: 460 LFGYD--TVTGRLTAKRP------------------------------ASMAMDQRLRSA 487

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAG--------------------EDWKIKAFANGED 407
           + A  G  ++ AD + IE R+ A  A                     +     A  +   
Sbjct: 488 VTAPEGSVIISADYSQIELRIAACFAEKMRAGTGLPGMLATAFRTGVDPHLTTALQSVRQ 547

Query: 408 -----------IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHC 455
                       Y+          +      +R   K     L Y      F        
Sbjct: 548 RGDIDFTGNAAAYIAGLCDEERCELKSRLFVERDTAKAQNFGLLYGMKDSSFWEYGRLAY 607

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           GL            + F+ +                                        
Sbjct: 608 GLTWTFEEAQAARDAWFKMY---------------------------------------P 628

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
            +  L       F+   +E   + A                 +     S R++  +    
Sbjct: 629 EIALLHDSYQSTFSAAAKETLFLKAHDGVFQTTTSRVVSGATL-----SGRKVTATSPFL 683

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD--IVLTVHDEIV 633
             SY                       Q    DI+   + +    G    +V  VHDE+V
Sbjct: 684 LLSY---------------------ACQGTGADIIISAIASMDH-GTRRHLVNVVHDELV 721

Query: 634 SETPDT-PYFSVGTLCSLM---TKNPSWAKGLPLKAEGYEAKRY 673
              P++        +   M            +P   +      +
Sbjct: 722 LCVPESCSQREAAEVRRAMLSAEDAVFAQYNIPASVDITVGNSW 765


>gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 91

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649
              + +Q  + DIL   M N  +          ++L VHDEIV E P+    ++  L   
Sbjct: 6   AINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTK 65

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
            M    S    +PL A+    + +
Sbjct: 66  TMESAIS--LSVPLIADENAGETW 87


>gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool]
          Length = 1235

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 103/403 (25%), Gaps = 93/403 (23%)

Query: 292  LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
               L        R+         + TGR S      QN+P+      + + T  + +   
Sbjct: 881  YPALYPTKHP--RVFTRWNQT-RTVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSS 937

Query: 352  TIADPLGLASDC--------------VRSCII--ASNGK-KLVVADLAGIEARVLAWIAG 394
            +        S                 R        +G   +V AD A IE R+LA   G
Sbjct: 938  SSPSSDVSPSSPSSSRLRYTLPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCG 997

Query: 395  EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
            +          +       A     P D+    +  I    E+A  Y        T    
Sbjct: 998  KGPLQSLLTGRDTREARGSA-----PDDESETSKEPIDLYREMAALYAEIPPSQVTKEL- 1051

Query: 455  CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               D  +     L         A +  +   A    +  +    
Sbjct: 1052 ------------------RDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVF 1093

Query: 515  QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
              V    + +                          + + + D  +   + RR    + K
Sbjct: 1094 PDVSHFIRSI--------------------------VAKGREDGFVTTLTGRRRYIPEAK 1127

Query: 575  GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-----------D 623
             + S++     +L            + +Q  + DI+   M                    
Sbjct: 1128 SNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPR 1178

Query: 624  IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
            ++L+VHDE+V          +   +   +T+N      +PL  
Sbjct: 1179 VLLSVHDELVMHCSLKHLQPLSKMIRKCLTENMP--VDVPLDV 1219



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 18/142 (12%)

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               + + PL   E  +  L   ++  G  I      +L+  + +    +++++ +    
Sbjct: 674 LRCHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDEALVAVEKEVNRTAGT 733

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMS------------------EGTLKSILSHSNITQ 272
                     L   LF    + L   +                    T + IL       
Sbjct: 734 SSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRPRRAAKRTLARSTAEEILQEIVDLH 793

Query: 273 LAKDLILNRLASSGSAILKLNT 294
               LI N  + +      L +
Sbjct: 794 PVVPLIQNFRSLAKLRSTYLES 815


>gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1171

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/459 (13%), Positives = 107/459 (23%), Gaps = 131/459 (28%)

Query: 275  KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR---------------TGR 319
            +   + R  +    +  L    ++   DG           SR               TGR
Sbjct: 757  RLHDMFRKVADKLHVCVLEKPRDSAVEDGPAVSDASTAQVSRVCYSMHPNWVLHNKSTGR 816

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD------------------------ 355
                +   QNLP+Q          + A     +  D                        
Sbjct: 817  IFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLA 876

Query: 356  ---------------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                   +R    A  G  L   D   +E R+LA ++G+    +
Sbjct: 877  EAAAVDQASSVQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQE 936

Query: 401  AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
              +   D+     A     P ID V  +QR   KV+   L Y  G +           + 
Sbjct: 937  HLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEF 996

Query: 460  QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                Q                            A        A   + + +   +  +  
Sbjct: 997  ATSEQQQH----------------------RGEAASSAPAPMAARDLLRRFHRVYPRIEN 1034

Query: 520  LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              ++  +                                 +   S R+            
Sbjct: 1035 YLRETRQEALR--------------------------SFAVETLSGRK--------SLIA 1060

Query: 580  LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----------KNGYDIVLTV 628
               A  +  R            VQ  + D+L   M+                   +V+++
Sbjct: 1061 EKDANRRRQRAIAQA-------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSI 1113

Query: 629  HDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPLKA 665
            HDE+V   P       V  +  ++  +       +PL  
Sbjct: 1114 HDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPLPV 1152


>gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 86

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649
                +Q  + DI+   M               +++ VHDE+V E       +V   +  
Sbjct: 1   AINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQ 60

Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673
           LM         +PL  E    + +
Sbjct: 61  LMENCTR--IDVPLLVEVGSGENW 82


>gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/462 (13%), Positives = 117/462 (25%), Gaps = 108/462 (23%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T VL+           SLK+  + L+                           Y     
Sbjct: 1   DTLVLSSLFNPMRKGGHSLKSWGIRLD--------------------------EYKGEFN 34

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPL--------SDGERDLWLLDQTINDRGYRID 202
           +  Q  +   +YCK+DV+ T  +++ L+           D E  +  +       G+ +D
Sbjct: 35  DWSQYSEEMKQYCKQDVKVTELVYQELLKEGSKFSQASIDLEHQVHAIMCEQEANGFLLD 94

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT---------------------------------- 228
            +L  ++      E  +++ DI +                                    
Sbjct: 95  TNLAQEIYTTCLAETTRIERDIKEFMVPIAVPVKEVNLKYKKDGSIFANQLLEGCNVQGD 154

Query: 229 ----DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL-----KSILSHSNITQLAKDLIL 279
                    +      +   L    G      ++G          L+    T       L
Sbjct: 155 YTKIMWEEFNLASQPQINKRL-NRLGWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGL 213

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            +     +     +   +    DGR+ G +   GA  T R +       N+P     ++ 
Sbjct: 214 KKWKVLETRWKLASEWLQGSQVDGRVHGQVITPGA-VTHRAAHRGPNMANIPSVPHGKDG 272

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +   +  +             +   R       GK LV  D AGI+ RVLA    +    
Sbjct: 273 ILWKMDGM------------YAAECRQAFTVPEGKLLVGTDAAGIQLRVLAHYMNDPV-- 318

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                  +  +      FN        + R   K    A     G      +     L  
Sbjct: 319 -----YTEQVIDGDIHTFNMNALGKFCKDRPTAKTFIYAFLLGAGVGKIAEI-----LGC 368

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                N    + +E     +        +         L G 
Sbjct: 369 NAAQANKSMQNFYEALPTLKR-LKSEAARAASMGWMKGLDGR 409


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 65/160 (40%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +RS   A  GK LV++D + IE R+ +   G++  I+AF  G D++  T 
Sbjct: 1   DPNLQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTA 60

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +       ++VSKE+R + K +   L Y   AK     A   G+DL            FE
Sbjct: 61  SILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFE 120

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
            +   ++ H  ++ +  EF           + V   +   
Sbjct: 121 YFVSFKNWHEKVKRELKEFKESRGYTLLGRKYVAHTFPDA 160


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 74/271 (27%), Gaps = 38/271 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVK--LWDRTEQSA------- 52
            L +D ET         G   Y E   I+  +  +     +         +         
Sbjct: 20  YLAMDFETVGDN----GGTDMYRE--EISGFSLTYRYKGEIINGYVPMRHREEDGSPSHL 73

Query: 53  -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104
                      + +    +    V HN+ F+  L K +LGI  P      T +L      
Sbjct: 74  NIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIA-PRTPVHDTLILMHLLDE 131

Query: 105 --LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 LK      LN      +   GK           D              +  F  
Sbjct: 132 DLPSYQLKVLATRFLNIPSDTFEEMFGKNAK------FADIAVEIARWYAGKDTYVGFLL 185

Query: 162 YCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +  +     +  F ++  + +  ER   +    +   G+ I+++ V   ++    E +++
Sbjct: 186 FEWQLNILNKPSFAKIKKVYERIERPCIMATFEMESEGFHINMEEVEVQRKESEAELEEI 245

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
              +         +      L   L++    
Sbjct: 246 SARLQARFGD--VNFSSPSQLLKLLYVDNDW 274


>gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/461 (14%), Positives = 112/461 (24%), Gaps = 107/461 (23%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T VL+           SLK     L       K                     D T  
Sbjct: 1   DTLVLSSLFDPQRKGGHSLKVWGERLG----DFKD--------------------DYTGG 36

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRID 202
                 +    YCK+DV+ T  L+  L+   +         E  +  +       G+ +D
Sbjct: 37  F-EVYTEEMKAYCKQDVKVTELLYNTLLKEGEAFSQASINLEHMVHAIMCEQQANGFELD 95

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT---------------------------------- 228
            DL  ++  +  +E  +++ +I +                                    
Sbjct: 96  TDLAQEIYTVCLKETLRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGD 155

Query: 229 ----DGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLIL 279
                    +      +   L    G +    ++           L+            L
Sbjct: 156 YTKIMWEEFNLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGL 214

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                  +         E    DGR+ GT+   GA  T R +       N+P        
Sbjct: 215 KAWKVLETRWKLAQEWLEKSQGDGRVHGTVITTGA-VTHRAAHRGPNMANIPS------- 266

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                   N+        G+ +   R       G+ LV  D AGI+ RVLA    +    
Sbjct: 267 -----VPHNKDGIFWKMDGMYAAECRQVFKVPEGRLLVGTDAAGIQLRVLAHYMNDPV-- 319

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                  +  +      FN        + R   K    A     G      +     L  
Sbjct: 320 -----YTEQVIDGDIHTFNMNALGRHCKDRPTAKTFIYAFLLGAGVGKIAEI-----LGC 369

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                NV   + +E     +        +         L G
Sbjct: 370 NGGQANVAMKNFYEALPTLKR-LKSEASRAASMGWLKGLDG 409


>gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae]
          Length = 471

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 84/312 (26%), Gaps = 65/312 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCA-YA-----WDDEPVKLWD-RTEQSAMPSDL 57
             D E  +   +  VG        V+T  + Y+     + + P    D            
Sbjct: 89  ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 144

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLKN 111
             +L     + V HN  F+R +     GI++       T  +AR            SL+ 
Sbjct: 145 KDFLESREYLKVWHNYSFDRHVLYNH-GINVQGLG-GDTMHMARLWNTARFQHGGYSLEA 202

Query: 112 ACLALNFS-EHLTKMEEGKALIARF-CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L    +   K   G   + +   KG     P         +  + +  Y   D E+
Sbjct: 203 LTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 262

Query: 170 TRELFKRLIPLSDG-------------------------------ERDLW--------LL 190
           T  L + L    D                                  D +          
Sbjct: 263 TWFLHRVLQHKLDQTFWFENAPKTNAAVNAAAAAAAVDEEPQTGSMYDFYRQYIILFGEC 322

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYL 245
              I  +G  +DL+ +  +++   ++R +L+  +         +    +       +  L
Sbjct: 323 LTDIERKGMHVDLEYLAGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLL 382

Query: 246 FLITGIDLVDMS 257
           F     +     
Sbjct: 383 FAPYYDEKKKKQ 394


>gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/468 (12%), Positives = 114/468 (24%), Gaps = 131/468 (27%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T VL+R          SLK     +                                  
Sbjct: 1   DTLVLSRLFNPIRENGHSLKAWGWRVG-------------------------CLKQEQPE 35

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSD--------GERDLWLLDQTINDRGYRID 202
           N  +      +YC +DV     ++  LI             E ++  + +     G+  +
Sbjct: 36  NFDEFTPAMLDYCVQDVRLNEAVYNFLIKEGKIFSEESVSLEHNVAKIIKQQEKNGFFFN 95

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII------------------------------ 232
               ++L   +  ++  +++++       +                              
Sbjct: 96  TQQAMELLAELKAKQLAVEDEVHSTFKPKLVDDKLVTPYVKKDGELSKRGMTDEEYDRCI 155

Query: 233 ---------------RSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLA 274
                           +      +  YL     I             +  L      + A
Sbjct: 156 KTQSVEPFMRQKLVDFNLGSRKQIGEYLIDFGWIPKKFTPTGQPIVDEGTLKKIEHIREA 215

Query: 275 KDLILNRLASSGSA--ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           K +    L     A    +++ L      D R+ G++   G + TGR +        +P 
Sbjct: 216 KLIADFLLYQKRIAQVTSRIDEL-----KDDRVHGSVIPNG-TITGRMTHRNPNMAQVP- 268

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                 +         RSC     G+KLV  D +G+E R+LA  
Sbjct: 269 ----------------------NAGSPYGKECRSCWTIPEGRKLVGIDASGLELRMLAHY 306

Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452
             +   I                   T  +    + R   K    AL Y  G     ++A
Sbjct: 307 MNDPEYI---------EEVVNGDIHTTNQNLAGLKTRDQAKTFIYALVYGAGDAKIGSVA 357

Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
                            + F++    ++       +  E      L G
Sbjct: 358 -----GGGLKKGKELKQTFFKNLPSLKNLKEK-VQKASERGYLKGLDG 399


>gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1538

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 119/423 (28%), Gaps = 106/423 (25%)

Query: 276  DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L   R       + +   L  AV      R+ G L     + TGR S      QN+P++
Sbjct: 1190 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1248

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391
            E                             +R  I++  G +  ++ AD + +E  VLA 
Sbjct: 1249 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1280

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            +  +   ++   +  D +    +     P +    +     KV                 
Sbjct: 1281 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVMRKAKV----------------- 1319

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                        +            +  S            +    L     + +  A  
Sbjct: 1320 ------------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEE 1367

Query: 512  AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              ++ + + +    + +  G   +++     ++   AN+ R+VM        +V P+  +
Sbjct: 1368 HHYKELSKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRVVMLTEPMYYFVV-PTGSK 1426

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NAT 618
              ++  +                     +L    VQ ++ +   I+C  +          
Sbjct: 1427 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNY 1469

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYE 669
                 +V TVHD +  +        V   L  +M           P     +P KAE + 
Sbjct: 1470 GEKAFLVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHS 1529

Query: 670  AKR 672
               
Sbjct: 1530 GPS 1532


>gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 619

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 90/700 (12%), Positives = 161/700 (23%), Gaps = 197/700 (28%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------SD 56
            L  D+ET               E   I + A       V           P        
Sbjct: 8   ILTWDLETDGLL----------RELTRIWVLAIGTVGSDVITTYTDHDPNYPPLMEGVER 57

Query: 57  LLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           L+ ++        AHN   F+R    K  G ++P    + T V+ R              
Sbjct: 58  LMAHVARGGKT-AAHNGINFDRKALAKVTGYEMPYTAILDTLVMGRLAEP--------ER 108

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L           G  L +      I+      +     +  +    YC++D+  T  L+K
Sbjct: 109 LG----------GHKLESY----GIEMGILKGSHNEWDRYSEEMRSYCEQDIAVTNALYK 154

Query: 176 RLI------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
           +L          D E  +  L       G+ +++   + L   + + R     ++ ++  
Sbjct: 155 KLERVQTWGESCDLEHTVAYLIDLQMTNGFPLNMREAMTLAAQLWERRDGYLAEMQRVFP 214

Query: 230 GII--------------------------------RSSRQTYALRMYLFLITGIDLV--- 254
            I                                  +    Y +   L    G       
Sbjct: 215 PIYVSAGAVTPKRTMKREGREYTAGAPYTKIVLQEFNPGSEYHVANRLKRKYGWRAPLTE 274

Query: 255 DMSEGTLKSILSHSNITQLAKDLILNR---LASSGSAILKLNT----LSEAVSSDGRLRG 307
             +    +++L   +  ++   L   R     +  ++  K N            + R+ G
Sbjct: 275 KGNPNITEAVLKKLDFPEVQPLLHFARVDKQWTQLASPPKKNGTGGGWIHHADENHRVHG 334

Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +   GA  TGR +       N+                                 +R  
Sbjct: 335 YVNSNGA-VTGRMTHSRPNSANI------------------------------DKEMRHI 363

Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427
            I S G K V  D  G+E RVLA         +      D        A +   D     
Sbjct: 364 WIPSMGMKQVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGDKALGTDAHSVNRDNTDLF 423

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   K +     Y  G +    +         +               +       +  
Sbjct: 424 SRDGAKTLLYGSLYGAGDEKAGNIWIADWRTSGKPVSEWPVWCHVRGKLKTAKAIGRVVK 483

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
                 +                     G  +L KD+           G           
Sbjct: 484 AKLLDGIV--------------------GFRKLIKDIETAAKSRGWLKGI---------- 513

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
                             RR+                                ++Q    
Sbjct: 514 ----------------DGRRIRVRHAHA---------------------ALNTLLQGTGA 536

Query: 608 DILCEGMKNATKNGYDI-----------VLTVHDEIVSET 636
            I+ + +        +I           +  VHDE+  E 
Sbjct: 537 IIMKKALAIYHAEITEIHGLVHGVHFGYLANVHDEVQQEC 576


>gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1]
 gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1]
          Length = 1050

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 85/744 (11%), Positives = 186/744 (25%), Gaps = 179/744 (24%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQSAMPSDL 57
              +D ET   + L  +    Y  Q             A D  P+  W + E+  +  +L
Sbjct: 243 YCALDTET---KNLSSLHNRIYTMQFTTNHNPNAGYVLAID-HPLTHWSKEERQYIKREL 298

Query: 58  LQYLRDET----VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA- 112
            Q    +T    +    H  +F+  + ++ L I I             +    +SL NA 
Sbjct: 299 RQRFAAKTGPLLITFNGH--MFDLRVIRQILRIPIMWLPVWEIMFAEHSLDENASLLNAA 356

Query: 113 ----------CLALNFSEH--------LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                           +                 KA  +   +   D+P +    +    
Sbjct: 357 SNAVNPDGKKATYGGLAPIFTSYGNDHYYTAAFSKAQRSTSGQVKPDNPDFLEYASTDTV 416

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERD-----LWLLDQTINDRGYRIDLDLVLK- 208
           +     +   +         +   P      +            + + G  +    +   
Sbjct: 417 SIAHIRQMQIKRASYMEIDGQSFAPYFVRHMEQQMSDTAHALSHMRNDGSSLSRPALKHL 476

Query: 209 ------LQELIAQERKK--LDEDIVKLTDG-------------------IIRSSRQTYAL 241
                 L+E++A+   +  L  ++ K                        I    +    
Sbjct: 477 MGPKSPLREMMAKTLDQLRLMNEVRKANKELLSDSGFKAKSLFGGVSDKWIFQPTKPDHK 536

Query: 242 RMYLFLITGIDLVDMSEGT-----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               F + G++ + MS+ T      K  + H         L     A +      +   S
Sbjct: 537 AKLFFDVLGLEPLSMSKITGKPQIDKEFIKHYKDKNKVVALYGEYQALTKVISTYVKAWS 596

Query: 297 EAVS------SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
             ++      +D  LR          TGR        Q +P                   
Sbjct: 597 RRLNTALDESTDDSLRADYFLVD---TGRLGSKDPNLQQIPS------------------ 635

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410
                  G  S  +++  +A  G  LV  D +  E R+ +  +G+     AF  G ++  
Sbjct: 636 ------RGPLSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAAAFRTGLELRQ 689

Query: 411 TTYAK-------------------AFNTPIDKVSKEQRAIGKVM--ELALGYQGGAKVFK 449
                                           V K+      V      + Y  GA+   
Sbjct: 690 AFIQDPSDANKKALKEKGDFHILNVQRFFKKLVDKDHPLRDAVKKVVFGVIYGKGAETLG 749

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                  +   +         +                     A  ++++    +     
Sbjct: 750 EDTKEGDISSLRAEVAKLYDESL------------TCKDAKRLARINEMLEELDD----- 792

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                  +  L+ +    +A  + +      +      + + +  +   ++   + R   
Sbjct: 793 ------KLTALFNEDRSEYAQGIVDKMFGEFKAGHRWIQRMSKMAEEKFYVYSFNGRVRH 846

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG---------------- 613
                   +      S+ +R  T         +Q ++ +I  +                 
Sbjct: 847 L---YAAMTGDKRIISKQVRRGTNAP------IQGVASEIGNKADRLIITEYYKRLPKLK 897

Query: 614 -MKNATKNGY--DIVLT--VHDEI 632
            M    ++ +   +     VHD +
Sbjct: 898 KMLGIDRSDWELRVFSQRAVHDAL 921


>gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1548

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 118/423 (27%), Gaps = 106/423 (25%)

Query: 276  DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L   R       + +   L  AV      R+ G L     + TGR S      QN+P++
Sbjct: 1200 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1258

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391
            E                             +R  I++  G +  ++ AD + +E  VLA 
Sbjct: 1259 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1290

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            +  +   ++   +  D +    +     P +    +     KV                 
Sbjct: 1291 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1329

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                        +            +  S            +    L     + +  A  
Sbjct: 1330 ------------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEE 1377

Query: 512  AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              ++ + + +    + +  G   +++     ++   AN+ R VM        +V P+  +
Sbjct: 1378 HHYKELCKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRAVMLTEPIYYFVV-PTGSK 1436

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NAT 618
              ++  +                     +L    VQ ++ +   I+C  +          
Sbjct: 1437 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNY 1479

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYE 669
                 +V TVHD +  +        V   L  +M           P     +P KAE + 
Sbjct: 1480 GEKAFLVNTVHDCVWVDAHKCVADEVHADLARIMGHTQEAIAALWPDMKLDVPFKAEIHS 1539

Query: 670  AKR 672
               
Sbjct: 1540 GPS 1542


>gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania
            infantum JPCM5]
          Length = 1548

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 118/423 (27%), Gaps = 106/423 (25%)

Query: 276  DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L   R       + +   L  AV      R+ G L     + TGR S      QN+P++
Sbjct: 1200 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1258

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391
            E                             +R  I++  G +  ++ AD + +E  VLA 
Sbjct: 1259 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1290

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
            +  +   ++   +  D +    +     P +    +     KV                 
Sbjct: 1291 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1329

Query: 452  ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                        +            +  S            +    L     + +  A  
Sbjct: 1330 ------------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEE 1377

Query: 512  AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              ++ + + +    + +  G   +++     ++   AN+ R VM        +V P+  +
Sbjct: 1378 HHYKELCKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRAVMLTEPIYYFVV-PTGSK 1436

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NAT 618
              ++  +                     +L    VQ ++ +   I+C  +          
Sbjct: 1437 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNY 1479

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYE 669
                 +V TVHD +  +        V   L  +M           P     +P KAE + 
Sbjct: 1480 GEKAFLVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHS 1539

Query: 670  AKR 672
               
Sbjct: 1540 GPS 1542


>gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 180

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 51/206 (24%), Gaps = 42/206 (20%)

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +  +  +         +    +     +     +    + + +    + E      
Sbjct: 9   RRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREF---IEETLEKAK 65

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            EG   +                          RR    DVK     +  A  +      
Sbjct: 66  NEGYVTTY-----------------------FGRRRPTPDVKSSNFMVREAAKRA----- 97

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDI---VLTVHDEIVSETPDTPYFSVGTLCS 649
                    +Q    D++   M    +   ++   +L +HD I+ E P      V  +  
Sbjct: 98  ----AANMPIQGTEADLMKRAMLRTEEKLGNLGEQILQIHDSILVECPKKNADKVVEILR 153

Query: 650 -LMTK-NPSWAKGLPLKAEGYEAKRY 673
             M    P     + LK +    + +
Sbjct: 154 FEMESVAPE--LDIKLKVDIKTGEHW 177



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 22/135 (16%), Gaps = 14/135 (10%)

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           + +V+  QR   KV+   + Y                 +            F        
Sbjct: 1   MAQVTSNQRRNAKVINFGVLYGMSPHGLSA-----ATGMSFIEAKKFIDDYFNLRRPIRE 55

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                 ++           G                V      + E              
Sbjct: 56  FIEETLEKAKNEGYVTTYFGRRRPT---------PDVKSSNFMVREAAKRAAANMPIQGT 106

Query: 541 RRVANVPRLVMRRHK 555
                   ++    K
Sbjct: 107 EADLMKRAMLRTEEK 121


>gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain
            Friedlin]
 gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major
            strain Friedlin]
          Length = 1548

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 115/421 (27%), Gaps = 102/421 (24%)

Query: 276  DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333
             L   R       + +   L  AV      R+ G L     + TGR S      QN+P++
Sbjct: 1200 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1258

Query: 334  ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
            E    ++     A                             ++ AD + +E  VLA + 
Sbjct: 1259 EDLRRLIVSRFSAQGM--------------------------MIEADYSQLEVVVLAALC 1292

Query: 394  GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
             +   ++   +  D +    +     P +    +     KV                   
Sbjct: 1293 RDPRMMQELRDNIDFHCLRVSLMTKEPYE----DVVRKAKV------------------- 1329

Query: 454  HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                      +            +  S            +    L     + +  A    
Sbjct: 1330 ----------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHH 1379

Query: 514  HQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
            ++ + + +    + +  G   +++     ++   AN+ R+VM        +V P+  +  
Sbjct: 1380 YKELSKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRVVMLTEPMYYFVV-PTGSKFD 1438

Query: 570  YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NATKN 620
            ++  +                     +L    VQ ++ +   I+C  +            
Sbjct: 1439 FTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGE 1481

Query: 621  GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYEAK 671
               +V TVHD +  +        V   L  +M           P     +P KAE +   
Sbjct: 1482 KAFLVNTVHDCVWVDAHKCVADEVCADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGP 1541

Query: 672  R 672
             
Sbjct: 1542 S 1542


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/466 (12%), Positives = 111/466 (23%), Gaps = 126/466 (27%)

Query: 95  CTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T +L+R          SLK     + F++                              
Sbjct: 1   DTLILSRLFRPIRESGHSLKTWGYRVGFAKQ-------------------------EQPL 35

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPL--------SDGERDLWLLDQTINDRGYRID 202
           +  +      EYC  DV     ++  L+             E  +  +     + G+  +
Sbjct: 36  DFDEYTPQMLEYCCNDVRLNELVYLSLLKEQAGFSPQSIALEHAVAKIISDQENNGFAFN 95

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII------------------------------ 232
                 L   +  +  ++ +++ +     +                              
Sbjct: 96  EKQATMLLAKLKDKMYEVTDEVQRTFKPRMVDVKLVVPKFKKDGELSKSGLTTEEYDTCM 155

Query: 233 ---------------RSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLA 274
                           +      +  YL                   +  L        A
Sbjct: 156 TQKKYQPFMRQELQEFNLGSRKQIGEYLMDFGWEPKRFTPTGQPIVDEGTLKKITHIHEA 215

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           K +    L      I ++ +  +A+  DGR+ G++   G + TGR S        +P   
Sbjct: 216 KPIADFLLYQKR--IAQIQSWLDALEEDGRVHGSVIPNG-TITGRMSHNHPNVAQVP--- 269

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                         R+C     G  LV  D +G+E R+LA    
Sbjct: 270 --------------------AVYSPFGVECRACWTVEEGNVLVGVDASGLELRMLAHYMN 309

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++  I                   T       E R   K    AL Y  G +   ++   
Sbjct: 310 DEEYI---------NEVVNGDIHTTNQKLAGLESRDTAKTFIYALVYGAGDEKIGSV--- 357

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
             +   +         +  +    ++       Q  +      L G
Sbjct: 358 --VGGSRKQGKELKNRSLTNLPALKTLKEK-VQQAAKRGFLKGLDG 400


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R    A  G  ++ AD + IE R++A    ++  +KAF   +D++  T +       
Sbjct: 2   KDLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNY 61

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQNVKSTSTFEDWEQAES 480
           ++++KE+R + K +   L Y    K     AS   G+++     N    + FE ++  + 
Sbjct: 62  EEITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKK 121

Query: 481 HHLWMQDQYPEFAVK--DKLIGTA 502
            H   ++            L+G  
Sbjct: 122 WHEETKNHLNHHGYIIAKTLLGRR 145


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 60/197 (30%), Gaps = 15/197 (7%)

Query: 11   RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68
                 +   G+  + E   I L   A ++ PV ++D      + +   L + L DE ++ 
Sbjct: 1244 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1301

Query: 69   VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
            +  N  F+          +        T + ++      ++         +  + K    
Sbjct: 1302 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLSV 1354

Query: 129  K-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                  +    +      +        +  L   Y K      + + + +  ++D E   
Sbjct: 1355 YLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLS---EQIVAENMQIVNDIENKC 1411

Query: 188  WLLDQTINDRGYRIDLD 204
             L    +   G  +DL+
Sbjct: 1412 ILPICDMELNGITVDLE 1428


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 102/386 (26%), Gaps = 36/386 (9%)

Query: 55   SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113
              L++ L +E +  V+ N      +F          K      +LA      S   +   
Sbjct: 664  ELLIRILENEAIKKVSFNCQESFKIFFAYNTY-FSPKNIWDPKILAWMYKPESKRVDMST 722

Query: 114  ---LALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                    S    +M    K L       + +  P   T +N+              +  
Sbjct: 723  LVVEYQIDSHDKLEMANVIKNLDQHTDNNNNNINPSM-TVSNYTCLANDIRNGSILQLIL 781

Query: 170  TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV--KL 227
              +L    +     E  +  +   +   G     + +   Q  I    + + +     + 
Sbjct: 782  EHKLSDAKLEPLQ-EMQIIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQFHLLRD 840

Query: 228  TDGIIRSSRQTYALRMYLFLITGIDL------VDMSEGTLKSILS----------HSNIT 271
              GI           + L  I  I         D    TL+               +   
Sbjct: 841  GLGIKMDDFGLSQRGVVLSCINQIKPSRIPQIPDAKAQTLRKFAEIDLSLKEEKAKNGDM 900

Query: 272  QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
            +         L     +      + + +S    +  +    G + TGR S      Q +P
Sbjct: 901  ENLIMACRIYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTG-TATGRLSSSSPNVQQIP 959

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDC---------VRSCIIASNGKKLVVADLA 382
            R   + ++  +     N  +                      R C     G  +V  D +
Sbjct: 960  RNVANIKVSDKEDGDGNDYDDDDVSDDEEEGTTNASTVHINARDCFRTRPGYTMVALDYS 1019

Query: 383  GIEARVLAWIAGEDWKIKAFANGEDI 408
             IE RV+A  + ++  +  F    D 
Sbjct: 1020 QIELRVMAHQSDDEHLLHFFQQDADF 1045



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 38/112 (33%)

Query: 598  TENIVQAISRDILCEGMKNATKN--------------------------------GYDIV 625
              +I+Q  + DI+   M    +                                    ++
Sbjct: 1090 VNSIIQGSAADIIKAAMIRINQLLIQESKEVNQILQQQGQQQGQTNQQQNKDDIIEARLL 1149

Query: 626  LTVHDEIVSETP----DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            L +HDE++ E P    +     +  +  +M  +        LK        +
Sbjct: 1150 LQIHDELIFEIPNVMLEIKPDILEKIKHMMECSTELKVD--LKVAMKIGNSW 1199


>gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 289

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 20/239 (8%)

Query: 1   MSKLFIDIETR--SPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           M  + +D ET   S   + K+G  AY       I   +   + E  + +   E   +  +
Sbjct: 1   MIDVTLDWETYFDSQYNIKKLGTMAYVRDPRFQILGASMKVEHEDTRWYTPNEIDVLVEE 60

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACL 114
           L        V  +  N+ F+ ++  +          +  T  +A+         L +   
Sbjct: 61  LKSLEASNGVRLIGQNTKFDGLILAEKHNFI--PSYYCDTMAMAKGLWPHHKSDLDSLTK 118

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L F    +K  +G  L +   K                   Q+  +Y  +D + T E F
Sbjct: 119 RL-FPNDKSK-HKGTELESFKGK--------TYEDIEADGTEQILIQYGVQDSDITYESF 168

Query: 175 KRLIPL-SDGERDLWLLDQTI-NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           K++       E D+  +   +  D  + +D  L+ ++     +E++ + +  +   +  
Sbjct: 169 KQMEQWYPKPEMDIIDMTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQTAIDFVNSD 227


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 109/334 (32%), Gaps = 86/334 (25%)

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           ++D +L   L +YGA             QNL R                           
Sbjct: 39  NNDNKLVVPLVYYGAHTGRYGGNEGLNLQNLQR--------------------------- 71

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                R  + A  G+ + VAD + IEAR++AW A E   +  F NG D Y T     +  
Sbjct: 72  -GSEHRKALTAPFGQLVYVADSSNIEARIVAWFAQETALLNQFKNGIDTYATLATDIYGF 130

Query: 420 PIDKVSKEQRA-IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           P+ K + +    +GKV  L L Y  GA+ F        + +                   
Sbjct: 131 PVTKQTHQLERNVGKVARLGLQYGMGARTFHRTMESGPMGIPPMP--------------- 175

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
                                    E + K +R  H  + + W ++       +    ++
Sbjct: 176 -------------------WAFPEIEKIVKTYRRTHPMIKKCW-EIGNQIIQKMIRKDTL 215

Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-------------SYLNTATS 585
              R   V    +          LP+   L + +++                   +  + 
Sbjct: 216 ETWRCLTVRHQCL---------ELPNGMYLQFPNLRNKEIQTAQGPQYEVVYDSYDYKSK 266

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
           +L+ +R YGGKL ENI QA++   + E M +  +
Sbjct: 267 KLVEKRLYGGKLLENIAQALAGLAMKEMMLDIQE 300


>gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1]
          Length = 494

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 104/423 (24%), Gaps = 92/423 (21%)

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL---------NTLSEAVSSDGRLRGT 308
             T    L        A   + +                     + + + V  +G +   
Sbjct: 106 YSTGDDALDLVAKFTEAAQPLRDMKKLIKDTTTYYLVEDDKGKQSGMLQYVEPNGIIHHQ 165

Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
           L    A+ TGR SG     QN+PR   S                           V+   
Sbjct: 166 LNNC-ATVTGRLSGSKPNLQNVPRDGTS--------------------------KVKEMF 198

Query: 369 IASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
           ++  G   +LV  D + +E   LA I+G+   ++   +G D++    A A     + V +
Sbjct: 199 VSRFGSDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVFE 258

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
           +                                 +     K         +  +      
Sbjct: 259 KCH------------------------------DKSHPEHKKYKQLRTDIKPRAFANQYG 288

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                 +          E  K+  R          + +             + +  V  +
Sbjct: 289 ASAMGISFSTGCSLEEAEQFKETERKLFPESSTFSERIVRPQVEQNGLSMPMESELVNGI 348

Query: 547 PRLVMRRHKRDVHIVLPSSRRL-VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
            +   R   + +     S R+   Y    G+                   ++    +Q  
Sbjct: 349 WKHFRRGFFKALSGTCYSFRQFPKYVKGVGEKYDYKDT------------QIANYPIQGE 396

Query: 606 SRDILCEGMKNATK---------NGYDIVLTVHDEIVSETPDTPYFSV--GTLCSLMTKN 654
           +  I+        +              + TVHD I  +  D     +    +  +M   
Sbjct: 397 ASFIVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQLDCADRETAIMVGTKVKEIMDST 456

Query: 655 PSW 657
           P W
Sbjct: 457 PKW 459


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 2/150 (1%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +R    A  G   V+AD + IE R+ A   GE   IKAF  G D++  T 
Sbjct: 1   DPNLQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTA 60

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           +       + ++KE+R + K +   L Y   AK     A+  G+DL            F 
Sbjct: 61  SILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFS 120

Query: 474 DWEQAESHHLWMQDQYPEFAVK--DKLIGT 501
            +E  +  H  ++++  +        L+G 
Sbjct: 121 YFEGFKDWHNKVKEELKKTGKSSGHTLLGR 150


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 3/165 (1%)

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
              L      +R     +    ++VAD + IE R+ A    +   I AF  G D++  T 
Sbjct: 1   DPNLQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFTA 60

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTF 472
           +       + ++KE+R + K +   L Y    +     A S  G+++      +     F
Sbjct: 61  SLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQIFHEKFF 120

Query: 473 EDWEQAESHHLWMQDQYPEF--AVKDKLIGTACELVKKAWRAKHQ 515
           E ++  +  H   +++           L+G   +++K      + 
Sbjct: 121 EHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTDAVNYP 165


>gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 406

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 121/480 (25%), Gaps = 127/480 (26%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233
           E    L+   +N  G     D+   +   +           +   +L +++       +R
Sbjct: 8   ESAFMLVATEMNRAGLPWRADVHRAVLHELLGERYAGGGEPRRLAELADEVSAAFGRRVR 67

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                  +R   F   GI +       L+ I         A   ++              
Sbjct: 68  PDLPADVVRA--FAQAGIKVRSTRRWELEEI------DHPAVKPLIEYKKLYRIWTAHGW 119

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  +    DGR R      G S +GRW+        +P+                     
Sbjct: 120 SWLQDWVRDGRFRPGY-LPGGSVSGRWTTNGGGALQIPK--------------------- 157

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R  ++A +G +LVVAD   +E RVLA I+ +   ++   +  D+Y +  
Sbjct: 158 ---------VIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYTSLS 208

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            +AF+   D          K+  L   Y              G  L+  +          
Sbjct: 209 DRAFSGDRDH--------AKIALLGAIY----------GQTSGDGLKNLAAL-------- 242

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                                R +    +    D     A   +
Sbjct: 243 -------------------------------------RRRFPRAVAYVDD----AAKAGE 261

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
           EG  +        PR        +  I                     T        R  
Sbjct: 262 EGRLVRTWLGRTSPRAAGAGDDDEAGIP-------QEPVEAAPADGEFTPGYASTNARAR 314

Query: 594 GGKLTENIVQAISRD--ILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649
           G      +VQ  + D  +L          G    +V   HDE++   P      V     
Sbjct: 315 GRFTRNFVVQGSAADWALLMLAALRQATAGMRAELVFFQHDEVIVHCPAEEARDVAEAIR 374


>gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2]
 gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2]
          Length = 801

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/517 (12%), Positives = 138/517 (26%), Gaps = 74/517 (14%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTS--VLARTNGLPSSLKNACLALNFSE 120
             +    HN L++     +          W   T     +  + L   +   C  L +  
Sbjct: 230 SDIPKCFHNGLYDSFHLMRYHA---APNNWIFDTMGLSHSWYSELSKDVGFLCSWLLYDH 286

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K    +   A     S           +     +   E  K         +K+  PL
Sbjct: 287 KEWKYMADREHKAIGGIESYW----KYAAYDTHMMMRALIELLKNGDTWMLRNYKKQFPL 342

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
                 ++         G+R++ +  LKL E   +  +   +D+  +TD    +      
Sbjct: 343 ------VYPSLYGA-FEGFRVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPGSPDQ 395

Query: 241 LRMYLFLITGIDLVDMSEGTL-------KSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +  +L+ + G      ++            + S   I  L  D + N      +      
Sbjct: 396 VSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALSTY-- 453

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC------VFQPQNLPRQERSEEILTQTIQAL 347
                   + RL  +L  +G + TGR++          Q QN P                
Sbjct: 454 --FSFRQWNSRLLYSLDPFG-TDTGRFASRASAAWIGTQIQNQPVYA------------- 497

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            +      +G      D +  EA   A+++     IKA      
Sbjct: 498 -----------------KEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKAL----- 535

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            +     +       KV  E     +   +   ++          ++  +  + F  N+ 
Sbjct: 536 CFPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLD 595

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
              T     +     L +  + P+    +K      + +  A+      V Q W+ +   
Sbjct: 596 DIQTLFLAAKILGVVLTLNPKAPK----EKTPKDFAKQLLDAYHIPFPEVQQWWESIFME 651

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                +    I+             +  +   +   S
Sbjct: 652 VLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS 688


>gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
 gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
          Length = 110

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 18/116 (15%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RR    ++K           ++            + +Q  + D++   M    +     
Sbjct: 2   GRRRPIPELKSANFMQRQFGERV---------AMNSPIQGTAADVMKIAMIRVDRELKKR 52

Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
                IVL +HDE++ ET  +   +V   L   M         + L+ +      +
Sbjct: 53  NMKSRIVLQIHDELLVETERSEVEAVKALLEEQMKGAAD--LKVALEVDAKVGDSW 106


>gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens]
          Length = 611

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 74/281 (26%), Gaps = 36/281 (12%)

Query: 65  TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115
               +  N+  F RI+  +  G D   K           + A          S ++    
Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+       +R                  +       +Y    +  T EL  
Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
                      L  +   +     +++ + + K   L+    K+L+++      G     
Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478

Query: 236 RQTYALRMYLFLITG---------IDLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284
                LR  LF             +    + +   T +++L+          +IL     
Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
                  ++ L  A    G +  T    G + TGR S    
Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHP 577


>gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1]
 gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1]
          Length = 791

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/438 (12%), Positives = 117/438 (26%), Gaps = 99/438 (22%)

Query: 252 DLVDMSEGTLKSILSH--------SNITQLAKDLILNRL---ASSGSAILKLNTLSEAVS 300
            +   S   L+ +  H        S +  L KD               + K+  + + V 
Sbjct: 390 PVYSTSSEVLEVLAKHGFEAADKLSRMASLEKDNGTYYRSVEYDKEGNVKKVKGMLQYVQ 449

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
            DG +  +L    A+ TGR S      QNLPR   S                        
Sbjct: 450 PDGIIHHSLNLC-ATATGRLSSSYPNLQNLPRDGTS------------------------ 484

Query: 361 SDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
              V+    +  G   +++  D + +E  +LA ++G++  ++    G D++    A    
Sbjct: 485 --RVKEMFESRFGTAGRIIEVDYSALEVVMLAALSGDENLLEQLVKGTDMHCLRLAAKLG 542

Query: 419 TPID---------------KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
            P +               K  K+ R   K    A  Y   A+            +    
Sbjct: 543 EPYEEVLHKAVENQAHPEHKRYKQMRTDIKPPSFAAQYGASAE-----GIAYATGVSVEY 597

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT---ACELVKKAWRAKHQGVLQL 520
                 +    + Q+ +    ++ +        + +           + +R  +      
Sbjct: 598 AKEFLETEARLFPQSIAFRGVVRAEVERTGELPEGLHREQDEATGAWRIYRRGYWQAPGG 657

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            +     +    +E                  + +    + + + R L +       +  
Sbjct: 658 ARYSFRQWPQWNKELRQRVMDYKDTQIANYWCQGEAFYLMAVSAGRVLRWLLSVNFLANE 717

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640
                ++            N                           VHD +  +  ++ 
Sbjct: 718 EFPQGRVC--------FINN---------------------------VHDALYFDVHESV 742

Query: 641 YFSVG-TLCSLMTKNPSW 657
              VG  + ++M   P +
Sbjct: 743 VREVGLQVKAIMEDAPKY 760



 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 21/195 (10%)

Query: 67  MCVAHNSLFERILFKKTLGIDI-----PSKRWICTSVLARTN----GLPSSLKNACLALN 117
           + VAHN+ +E   F      +         R +CT +             SL        
Sbjct: 70  LLVAHNAGYEVSWFLTRYRDEFEKFLKRGGRVLCTQMAEYILSNFTDTYPSLDETAPKYG 129

Query: 118 --FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K    +  +       + +        +     + F  Y +  +   R  + 
Sbjct: 130 GTHKIDAVKELWKQGHLTSQIDPKLLAEYLAGPEGDVENTRRTF--YGQMALLQERGQWG 187

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLD----LVLKLQELIAQERKKLDEDIVKLTDGI 231
             +   +               G  ++ +     + K +  +A+ R ++ + + +L +  
Sbjct: 188 LFLERCEALLAF----AYCEFFGLYVNTEVAEANLAKQEAELAELRAEVQKLLPELPEHF 243

Query: 232 IRSSRQTYALRMYLF 246
             +    Y L   LF
Sbjct: 244 EFNWGSDYHLSALLF 258


>gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
 gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
          Length = 557

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 85/532 (15%), Positives = 132/532 (24%), Gaps = 143/532 (26%)

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFK---------------RLIPLSDGERDLWLLDQT 193
           RA+ + +W    E   R      E+ +               RLI     E    +L   
Sbjct: 105 RADALGSWATTTERLARLAHLALEIQRVQEASLRERAGGRAERLIRTVWSESAAAVLCLE 164

Query: 194 INDRGYRIDLDLVLKLQ----------ELIAQERKKLDED--IVKLTDGIIRSSRQTYAL 241
           +   G  +D      L           +  A   + L +   +     G     R    +
Sbjct: 165 LERDGLPVDRLAAEDLISAAAGPRPRDDADAARIRALRDQVVLRHARGGDRTDLRNPAHV 224

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           R  L    G+D+ +     L+      +   L   L+  R     +       L E V  
Sbjct: 225 RAML-QSVGVDVPNTRAWVLEPY---RHTHPLVDALLSWRKDERIATTYGYRWLDEHVGG 280

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           D RLRG       +  GR +       NLP                              
Sbjct: 281 DDRLRGAWTACDGAA-GRMTAQN-GLHNLPAP---------------------------- 310

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R  I A      V ADL  +E RVLA ++ +    +A  + +             P+
Sbjct: 311 --LRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRSDDLYA----------PV 358

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                  R++ KV  LA  Y   +                 +           +  A   
Sbjct: 359 ADKLGVDRSVAKVAVLAAMYGQRSG----------------AAGEALKDLEAAYPVAMGV 402

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                      A  D +                                    GG +   
Sbjct: 403 LDR--------AYADGVARRPLRTF----------------------------GGRLIRF 426

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
             A       R          PS  RL      GD    + A  +  R           I
Sbjct: 427 GSAGDAADPTRAEGHADQEGEPSGIRL-----DGDRGAADAARGRFAR---------NAI 472

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q  + ++               G  IVL +HDEI+   P +          
Sbjct: 473 IQGSAAELFKAWAATVRHAVRPLGGQIVLCLHDEILVHVPRSRAEEARRAVE 524


>gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 572

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/405 (12%), Positives = 101/405 (24%), Gaps = 78/405 (19%)

Query: 149 RANHVQAWQLFGEYCKRDVEA--TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           R    +    +                  RL  L   E    ++   +   G     DL 
Sbjct: 142 RYTAEELRAEYAAQQAALATVGQEENQRSRLQLLLAAESAGAMIAAEMQHAGVPWREDLH 201

Query: 207 LKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            ++                + + L++++ +L +    +      L   L    GI++   
Sbjct: 202 EQILAEHLGPRPPAGHRPAKLEVLNQELRRLLNSPTLNPDSPQDLMRALH-RNGIEVKTT 260

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
            +  L+        +  A   +L     S        +  +A  + GR R      G   
Sbjct: 261 RKWELRE------SSHPAIAPLLAYKQLSRLHTANGWSWLDAWVAGGRFRPEYV-VGGVV 313

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           +GRW+        +PR                               +R  + A  G KL
Sbjct: 314 SGRWASRGGGALQIPRN------------------------------IRGAVHADPGHKL 343

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           +VAD + +E RVL  +A +    +A  + +                      RA  KV  
Sbjct: 344 IVADASQLEPRVLVALAQDSSMAEAARDQDLYAGIAAKGFGG---------DRAKAKVAL 394

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           L   Y   +                             + +A  +               
Sbjct: 395 LGAMYGATSG----------------EAGRLMPQLARTYPRAVDYVEQAARAGESGGTVT 438

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
             +G +     + W            +       + +  G  +  
Sbjct: 439 TRLGRSSPPPSERWFQSQ---RSASAEEQRRAESIARSRGRFTRN 480



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 43/197 (21%), Gaps = 35/197 (17%)

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
           D                  +        + +                 +       +   
Sbjct: 362 DSSMAEAARDQDLYAGIAAKGFG-GDRAKAKVALLGAMYGATSGEAGRLMPQLARTYPRA 420

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
           +       E  A   + GG+++ R   + P               PS R           
Sbjct: 421 VDY----VEQAARAGESGGTVTTRLGRSSPP--------------PSERWFQSQRSASAE 462

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG-----------MKNATKNGYDIVL 626
                 +    R    G      +VQ  + D                 K+      ++VL
Sbjct: 463 EQRRAESIARSR----GRFTRNFVVQGSAADWAACWLAELRRRLRALRKDLH-LNAELVL 517

Query: 627 TVHDEIVSETPDTPYFS 643
            +HDE++   P     +
Sbjct: 518 FLHDEVMVHAPVEAVDA 534


>gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X]
          Length = 801

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 65/517 (12%), Positives = 138/517 (26%), Gaps = 74/517 (14%)

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTS--VLARTNGLPSSLKNACLALNFSE 120
             +    HN L++     +          W   T     +  + L   +   C  L +  
Sbjct: 230 SDIPKCFHNGLYDSFHLMRYHA---APNNWIFDTMGLSHSWYSELSKDVGFLCSWLLYDH 286

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K    +   A     S           +     +   E  K         +K+  PL
Sbjct: 287 KEWKYMADREHKAIGGIESYW----KYAAYDTHMMMRALIELLKNGDIWMLRNYKKQFPL 342

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
                 ++         G++++ +  LKL E   +  +   +D+  +TD    +      
Sbjct: 343 ------VYPSLYGA-FEGFKVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPGSPDQ 395

Query: 241 LRMYLFLITGIDLVDMSEGTL-------KSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +  +L+ + G      ++            + S   I  L  D + N      +      
Sbjct: 396 VSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALSTY-- 453

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC------VFQPQNLPRQERSEEILTQTIQAL 347
                   + RL  +L  +G + TGR++          Q QN P                
Sbjct: 454 --FSFRQWNSRLLYSLDPFG-TDTGRFASRASAAWIGTQIQNQPVYA------------- 497

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
                            +      +G      D +  EA   A+++     IKA      
Sbjct: 498 -----------------KEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKAL----- 535

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
            +     +       KV  E     +   +   ++          ++  +  + F  N+ 
Sbjct: 536 CFPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLD 595

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
              T     +     L +  + P+    +K      + +  A+      V Q W+ +   
Sbjct: 596 DIQTLFLAAKILGVVLTLNPKAPK----EKTPKDFAKQLLDAYHIPFPEVQQWWESIFME 651

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                +    I+             +  +   +   S
Sbjct: 652 VLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS 688


>gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)]
          Length = 563

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 78/538 (14%), Positives = 140/538 (26%), Gaps = 149/538 (27%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLD 191
            R  +    S  ++  +A H+    L   Y ++     R  L  RL  L+  E    L+ 
Sbjct: 112 QRSAEPGAQSSLFEP-QAVHLPLSDLLAVYAEQQRRHDRSALPDRLRLLTAAESAGMLVA 170

Query: 192 QTINDRGYR----IDLDLVLKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             +N  G      +  +++  L           +   +L E++       +R       +
Sbjct: 171 AEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPADVV 230

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           +   F   G+ +       L+S+         A   ++         +    +  +    
Sbjct: 231 KA--FGQAGVKVGSTRRWELESL------DHPAVKPLIEYKKLYRIWVAHGWSWLQDWVR 282

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR R      G + TGRW         +P+                             
Sbjct: 283 DGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK----------------------------- 312

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R  ++A  G +LVVAD   +E RVLA I+ +   ++      D+Y +   +AF+   
Sbjct: 313 -VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRAFSGDR 371

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D          K+  L   Y              G  L+  +                  
Sbjct: 372 D--------QAKLAVLGAVY----------GQTSGDGLKNLAAL---------------- 397

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                                        R +    +    D     A   +EG  +   
Sbjct: 398 -----------------------------RRRFPRAVAYVDD----AARAGEEGRLVRTW 424

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                P         +                 GD +            R  G      +
Sbjct: 425 LGRTCPPAAGAADGTEEA-----GLPQDEPAGAGDRAQEWVPGYASTNARARGRFARNFV 479

Query: 602 VQA---------------ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
           VQ                   D+  E           +V   HDE++   P+    +V
Sbjct: 480 VQGSAADWALLLLAALRQTCADMAAE-----------LVFFQHDEVIVHCPEEEAATV 526


>gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 85/589 (14%), Positives = 132/589 (22%), Gaps = 162/589 (27%)

Query: 93  WICTSVLARTNGLP-------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           W  T+  ART             L+     L  S           L          + P 
Sbjct: 52  WDDTAAWARTLIAAGVRVARCHDLRLCHAILRLSTQT----ADSELARLPAGPWDRAAPS 107

Query: 146 DCTRANHVQAWQLFGEYCKRDVE---ATRELF----------KRLIPLSDGERDLWLLDQ 192
           +   +     +        R  +   A   L            RL  L   E    L+  
Sbjct: 108 EREPSASATLFDDLDTSDGRSPDELVAELRLQLEAVAASAEPGRLRLLLAAESAGALVAA 167

Query: 193 TINDRGYRIDLDLVLKLQELIAQ----------ERKKLDEDIVKLTDGIIRSSRQTYALR 242
            ++  G   D  +   L   +               +L   + ++      +      + 
Sbjct: 168 EMSADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREILRAPDLNVDSPPDVL 227

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302
             L    GID     +  L+ I             +L     S        T  E    D
Sbjct: 228 RALR-RAGIDAASTRQWELQEI------DHPVIASLLEHKRLSRLLTANGWTWMETWIRD 280

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
           GR        G   TGRW+        LPR                              
Sbjct: 281 GRFHPEYVPGGV-VTGRWAASGGGALQLPR------------------------------ 309

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            +RS + A  G +LVVAD A +E RVLA +A +     A    +       A        
Sbjct: 310 QIRSAVRADRGWRLVVADAAQLEPRVLAALAEDRAMADAGRGTDLYQGLVDAGVV----- 364

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
               + RA  KV  L   Y                                         
Sbjct: 365 ----DTRAHAKVAMLGAMY----------------------------------------- 379

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                            G     +       +         +        + G  +S R 
Sbjct: 380 ----------GATSGESGRLMPRLV----RAYPRATGY---VERAA-RAGESGAVVSTRL 421

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
             + P                          +   +    A       R  G      +V
Sbjct: 422 GRSSPPPGDAWVDVQQI-------------GRAGEASSADAARARTSARDQGRFTRNFVV 468

Query: 603 QAISRDI-------LCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYF 642
           Q  + +        L   +    + G    +V  +HDE++   PD    
Sbjct: 469 QGSAAEWALCWLAGLRRRLAAMERPGSRPHLVFFLHDEVMVHAPDDRVD 517


>gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1103

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 100/376 (26%), Gaps = 70/376 (18%)

Query: 265  LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR-LRGTLQFYGASRTGRWSGC 323
                +  +   + I     S       +  L + +  + + +   L   GAS TGR S  
Sbjct: 756  EKEKDKIKQIINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGAS-TGRLSCD 814

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                QN+  + R    L          +                      K L+  D   
Sbjct: 815  QPNLQNIHSKFRCTISLKLNQLNSISIKKENIKNTSI------------NKNLLTFDYKQ 862

Query: 384  IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
            +E  V+A+++ ++  +K   N +    T          ++++KE R + K +   + Y  
Sbjct: 863  MELFVMAYLSFDNQLLKMLNNSDVFVETAKILF---NTNEITKELRRMTKTVIYGILYGQ 919

Query: 444  GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
                         L + +        + F  +          +           LIG   
Sbjct: 920  SEN-----GLAKNLLISENFAKSLIDNFFNFYPNVYKFMQKQKILVKNMNSVYTLIGR-- 972

Query: 504  ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            + +         G+   ++               I       +   ++  +K        
Sbjct: 973  KRIVDL------GIKNKYRISMN---------TPIQGCSADIMKFALLSCNKIISFDNNI 1017

Query: 564  SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
            +       ++    + +N +  +  +      KL                          
Sbjct: 1018 N----KDINIFLKMNNINVSLLKKYQNYIKSTKLI------------------------- 1048

Query: 624  IVLTVHDEIVSETPDT 639
              L +HDE++ E  + 
Sbjct: 1049 --LQIHDELLFECDEN 1062


>gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis]
          Length = 1781

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 106/332 (31%), Gaps = 46/332 (13%)

Query: 147  CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            CT A    AW+      +    +T  +      L + E  L ++   +   G  ID   +
Sbjct: 1458 CTAAASRAAWEEVQPQLQAINGSTMAV------LLEQEMPLAVVLAGMEAVGVGIDTQHL 1511

Query: 207  LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLV-------- 254
              L+  + Q RK ++ +I +     +  S+        LF       G+           
Sbjct: 1512 QSLRSQLEQRRKDIELEIARALGRRLDLSKFKEVS-DVLFGKLEGQLGLQPPPCAKKLKR 1570

Query: 255  ---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV------------ 299
                 ++  +++++  +        LI      +  ++  +  L +              
Sbjct: 1571 GGYSANKEVMQALVRLNPDCPPVVKLIAEHRRLAY-SVWFIRQLLQCARAGAALAQQLEP 1629

Query: 300  ----SSDGRLRG-TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
                +  GR  G    +    +T   +G       L R+          +          
Sbjct: 1630 AAGAAPLGRAGGGPRIWTVLHQTNSDTGAGAVLLGLLRRCCVPRTHELRMLLKGTAREGD 1689

Query: 355  DPLGLASDC-----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDI 408
            D             VR   +A+ G  L+ AD   IE R++A  + ++  +  F +   D 
Sbjct: 1690 DVSASGQHRLLEANVRKAFVAAPGCVLLGADYRAIELRMMAHFSQDEKLLATFQDGQHDP 1749

Query: 409  YVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            +    AK     + +VS+  R + K ++  + 
Sbjct: 1750 FRLLAAKWLGKELGQVSQTDRQLIKHLQYGIM 1781


>gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 590

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 83/327 (25%), Gaps = 66/327 (20%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              + L  ++ +L      +      L   L    GI++   S+  LK +          
Sbjct: 232 ARLEALAAELRRLLGSPALNPDSPQELIRALH-RNGIEVKSTSKWELKDL------PHPV 284

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L     S        +  +A  + GR R      G   +GRW+        +PR  
Sbjct: 285 IGPLLEYKKLSRLHTANGWSWLDAWVAGGRFRPEYV-VGGVVSGRWASRGGGALQIPR-- 341

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR  + A  G KL+VAD + +E RVL  +A 
Sbjct: 342 ----------------------------QVRGAVHADPGYKLIVADASQLEPRVLVALAR 373

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +A  + +                      RA  KV  L   Y   +         
Sbjct: 374 DSVMAEAARDQDLYAGIAAKGFGG---------DRAKAKVALLGAMYGATSG-------- 416

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               + +A                    +G +     + W   +
Sbjct: 417 --------ESGRLMPQLARTYPRAVDFVEQAARAGEAGGTVTTRLGRSSPPPSERW---Y 465

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISAR 541
           Q       +       + +  G  +  
Sbjct: 466 QSQRSATAEEQRRAESIARSRGRFTRN 492



 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 43/199 (21%), Gaps = 41/199 (20%)

Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                          +        + +                 +       +   +   
Sbjct: 378 AEAARDQDLYAGIAAKGFG-GDRAKAKVALLGAMYGATSGESGRLMPQLARTYPRAVDF- 435

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
               E  A   + GG+++ R   + P               PS R       +   S   
Sbjct: 436 ---VEQAARAGEAGGTVTTRLGRSSPP--------------PSERWY-----QSQRSATA 473

Query: 582 TATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKN----------------ATKNGYDI 624
               +        G+ T   +VQ  + D     +                      G ++
Sbjct: 474 EEQRRAESIARSRGRFTRNFVVQGSAADWAACWLAELRRRLRSLRAHGTGAGPGGAGPEL 533

Query: 625 VLTVHDEIVSETPDTPYFS 643
           V  +HDE++   P      
Sbjct: 534 VFFLHDEVMVHAPAGAVDE 552


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 96/376 (25%), Gaps = 75/376 (19%)

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL----------IAQ 215
           D  AT     RL  L   E    L    +   G         +L E           +  
Sbjct: 125 DQRATIGTDARLDLLIAAESAGALSAAEMTHTGLPFSTQKHRELLEERLGPRPTGYDLPA 184

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
             ++L   I ++    +  S          F   GI+L    +  L+ I         A 
Sbjct: 185 RMQELAAQISEVFGRTVNPSSSVEITEA--FGRQGIELPSTRKWFLQEI------DHPAV 236

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
            L+L     +           ++     R R      G   +GRW+        +P+   
Sbjct: 237 PLLLRHRELAKLYSTNGWQWMDSWVRGDRFRPIYVPGGV-VSGRWASRGGGALQIPKT-- 293

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +RS ++A  G   VVAD   +E R+LA ++G+
Sbjct: 294 ----------------------------MRSSVVADPGHVFVVADAGQLEPRILAAMSGD 325

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
              + A  + +   +                  RA  KV  L + Y   A          
Sbjct: 326 RRMMAAAGDDDLYALVGAEAFGG---------DRAKAKVAILGVLYGATAG--------- 367

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                            + +  A  +            V   L+G AC      +   H 
Sbjct: 368 -------EAKALLILLRKRFPVAVEYVEQAAKAGERGEVVKSLLGRACPPPSPDFY-SHG 419

Query: 516 GVLQLWKDLTEGFACV 531
                 +         
Sbjct: 420 DAHARGRFTRNFVVQA 435


>gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 571

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/520 (13%), Positives = 138/520 (26%), Gaps = 128/520 (24%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLD 191
            R  +       ++      V    L   Y ++     R     R+  L+  E    L+ 
Sbjct: 121 QRTAEPGSQDSLFEPRPVVSVPFDGLLTVYAEQLRRHDRAEHPGRMRLLTAAESAGMLVA 180

Query: 192 QTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYAL 241
             ++  G     D+   L   +           +   +L + +       +R       +
Sbjct: 181 AEMHRAGLPWRADVHRDLLNELLGERYAGGGEPRRLAELADQVSAAFGRRVRPDLPADVV 240

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           +   F   G+ L       L  +         A + ++              +  +    
Sbjct: 241 KA--FAQAGVRLKSTRRWELAEL------DHPAVEPLIAYKKLYRIWTAHGWSWLQDWVR 292

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR R      G + +GRW+        +P+                             
Sbjct: 293 DGRFRPEY-LPGGTVSGRWTTNGGGALQIPK----------------------------- 322

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R  ++A +G +LVVAD   +E RVLA I+ +   ++   + +D+Y     +AF+   
Sbjct: 323 -VIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAFSGDR 381

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           D          K+  L   Y              G  L+  +                  
Sbjct: 382 DH--------AKIALLGAIY----------GQTSGDGLKNLAAL---------------- 407

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                                        R +    +     + E      +EG  +   
Sbjct: 408 -----------------------------RRRFPRAVAY---VDEAAK-AGEEGRLVRTW 434

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                PR V      +  +               +  ++    S   R R  G      +
Sbjct: 435 LGRTSPRAVGAGEAEEAGLPQEGGE-----QPAEEGEFVPGYASGNARAR--GRFTRNFV 487

Query: 602 VQAISRD--ILCEGMKN--ATKNGYDIVLTVHDEIVSETP 637
           VQ  + D  +L              ++V   HDE++   P
Sbjct: 488 VQGSAADWALLMLAALRRSLAGMRAELVFFQHDEVIVHCP 527


>gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
 gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
          Length = 668

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/440 (14%), Positives = 104/440 (23%), Gaps = 107/440 (24%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNI 270
           Q+ ++L E I ++      +      L   L    G+ +       LKS           
Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRQK 357

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                D IL              T ++   S+G  R  L+  GA  TGRW         L
Sbjct: 358 RWAMIDPILRYKKLYRIWTANGWTWADTWVSEGAFRPHLEVGGA-ATGRWGASGGGALQL 416

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R  + A  G+ L V D + IE R+LA
Sbjct: 417 P------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRILA 446

Query: 391 WIAGEDWKIKAFANGEDIY-VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            ++ ++    A    +    +   A+            +R+  KV  LA+ Y G +    
Sbjct: 447 ALSRDEALASAGRGADLYAGIAELARMKGV-----GLTERSHAKVGMLAIMYGGRSGEIG 501

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +                       + QA                    +G     V + 
Sbjct: 502 ALLP----------------HVAALFPQAMDFTERAARIGEAGGQVTTFLGRTSPPVDER 545

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +R           +     +     G       V              V   L S R   
Sbjct: 546 FREIVADRSSPAAESR-AVSSARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERIFG 604

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                                                 IV  +H
Sbjct: 605 MP------------------------------------------------MRTRIVYFLH 616

Query: 630 DEIVSETPDTPYFSVGTLCS 649
           DE++   P+     V  +  
Sbjct: 617 DELLLCGPELEADRVERIVR 636


>gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG]
          Length = 406

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/463 (11%), Positives = 109/463 (23%), Gaps = 113/463 (24%)

Query: 95  CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T +L+R          SL                  G   I      +           
Sbjct: 1   DTLILSRLADPTRKGGHSLNALS--------------GNEKIDFHDFSTYT--------- 37

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS--------DGERDLWLLDQTINDRGYRID 202
                      YCK+DV    +++ +L              E  +  +       G+ +D
Sbjct: 38  ------PEMLTYCKQDVAINEKVYLQLKDELSNFGKASIQLEHQMQAIVCEQEKNGFMLD 91

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTD--------------------------------- 229
            D+  ++     +E  +++ +I +                                    
Sbjct: 92  TDIAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGD 151

Query: 230 -----GIIRSSRQTYALRMYLFLITGIDLVDMSEGTL------KSILSHSNITQLAKDLI 278
                    +      +   L           ++         +++ +  +    A   +
Sbjct: 152 YTKIAWEEFNLGSPVQVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGL 210

Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338
                             +     GR+ G +   GA  T R +       N+P     ++
Sbjct: 211 KAWKVLETRW-KLAQEWLQKSQETGRVHGRVILTGA-VTHRAAHQGPNMANIPSVPHGKD 268

Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
            +   ++ +                 R       GK LV  D AGI+ RVLA    +   
Sbjct: 269 GILWKMEGM------------YGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP-- 314

Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458
                   +  +      FN        + R   K    A     G  +  ++     L 
Sbjct: 315 -----IYTEQVIDGDIHTFNKEALGRFCKDRPTAKTFIYAFLLGAGTGMIASI-----LG 364

Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                 N   ++ +E     +        Q         L G 
Sbjct: 365 CNNRQANEAMSNFYEAIPALKK-LKSQASQAASMGWIKGLDGR 406


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/471 (14%), Positives = 116/471 (24%), Gaps = 125/471 (26%)

Query: 95  CTSVLARTNGLP----SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            T VL+           SL N    L F                                
Sbjct: 1   DTLVLSSLACPSRAGGHSLDNWGSILGFP--------------------------KGDHT 34

Query: 151 NHVQAWQLFGEYCKRDV----EATRELFKRLI----PLSDGERDLWLLDQTINDRGYRID 202
           +         EYCKRDV    +    L + L          E  +  + Q   D G+ +D
Sbjct: 35  DWSTYSPEMREYCKRDVGLLEKVVLALDEELKGFSEKSIQLEHQVAWIIQEQMDNGWLLD 94

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT---------------------------------- 228
            + V  L   + +++ +L++++ K+                                   
Sbjct: 95  QEAVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGERWSD 154

Query: 229 ---------DGIIRSSRQTYALRMYLFLITGIDLVDMSEG---------TLKSILSHSNI 270
                    +    +      +   L            +              +L+    
Sbjct: 155 EICGEHTRLEWQEFNIGSRQQIAERLMSAGWKPTKFTPKTPKGGGGNPIVDDVVLADVKG 214

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              A  +           I    +  +AV  DGR+ G +   GA  TGR +        +
Sbjct: 215 IPEATLMADYLTVVRR--IAMAQSWLDAVEDDGRVHGEVNSNGA-VTGRMTHYSPNLGQV 271

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
               +                       +    +RSC     G KLV  D  G+E R+LA
Sbjct: 272 TSGSK-----------------------IYGPEMRSCWTVPQGHKLVGMDADGLELRMLA 308

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
               +    +  A G+    T    A        S++     K    A  Y  G     T
Sbjct: 309 HYMNDPEYTRMVAEGDKDAGTDAHTANQRAAGLNSRDD---AKTFIYAFLYGAGDAKIGT 365

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
           +     +     +         ++     S    + +          L G 
Sbjct: 366 I-----VGKGAKAGRELKARFLDNTPALASLRERVSNSARR-GWLKGLDGR 410


>gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 668

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/440 (14%), Positives = 105/440 (23%), Gaps = 107/440 (24%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNI 270
           Q+ ++L E I ++      +      L   L    G+ +       LKS         + 
Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRDK 357

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                D IL              T ++   S+G  R  L+  GA  TGRW         L
Sbjct: 358 RWALIDPILRYKKLYRIWTANGWTWADTWVSEGAFRPHLEVGGA-ATGRWGASGGGALQL 416

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                +R  + A  G+ L V D + IE R+LA
Sbjct: 417 P------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRILA 446

Query: 391 WIAGEDWKIKAFANGEDIY-VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
            ++ ++    A    +    +   A+            +R+  KV  LA+ Y G +    
Sbjct: 447 ALSRDEALASAGRGADLYAGIAELARLKGV-----GLTERSHAKVGMLAIMYGGRSGEIG 501

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +                       + QA                    +G     V + 
Sbjct: 502 ALLP----------------HVAALFPQAMEFTERAARIGEAGGQVTTFLGRTSPPVDER 545

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           +R           +     +     G       V              V   L S R   
Sbjct: 546 FREIVADRSSPAAESR-AVSTARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERIFG 604

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629
                                                                 IV  +H
Sbjct: 605 MP------------------------------------------------MRTRIVYFLH 616

Query: 630 DEIVSETPDTPYFSVGTLCS 649
           DE++   P+     V  +  
Sbjct: 617 DELLLCGPELEADRVERIVR 636


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 87/350 (24%), Gaps = 75/350 (21%)

Query: 192 QTINDRGYRIDLDLVLKLQEL----------IAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             +   G          L E           +    ++L   I ++    +  S      
Sbjct: 151 AEMTHTGLPFSTRKHRALLEERLGPRPTGYDLPARMQELAAQISEVFGRTVNPSSSVEIT 210

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
               F   GI+L    +  L+ I         A  L+L     +           ++   
Sbjct: 211 EA--FGRQGIELPSTRKWFLQEI------DHPAVPLLLRHRELAKLYSTNGWQWMDSWVR 262

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
             R R      G   +GRW+        +P+                             
Sbjct: 263 GDRFRPIYVPGGV-VSGRWASRGGGALQIPKT---------------------------- 293

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +RS ++A  G   VVAD   +E R+LA ++G+   + A  + +   +           
Sbjct: 294 --MRSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAAAGDDDLYALVGAEAFGG--- 348

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                  RA  KV  L + Y   A                           + +  A  +
Sbjct: 349 ------DRAKAKVAILGVLYGATAG----------------EAKALLVLLRKRFPVAVEY 386

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                       V   L+G AC      +   H       +         
Sbjct: 387 VEQAAKAGERGEVVKSLLGRACPPPSPDFY-SHGDAHARGRFTRNFVVQA 435


>gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 493

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/524 (15%), Positives = 146/524 (27%), Gaps = 121/524 (23%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLD 191
            R  +    S  ++  +A H+    L   Y ++     R  L  RL  L+  E    L+ 
Sbjct: 42  QRSAEPGAQSSLFEP-QAVHLPLSDLLAVYAEQQRRHDRSALPDRLRLLTAAESAGMLVA 100

Query: 192 QTINDRGYR----IDLDLVLKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             +N  G      +  +++  L           +   +L E++       +R       +
Sbjct: 101 AEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPADVV 160

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           +   F   G+ +       L+S+         A   ++         +    +  +    
Sbjct: 161 KA--FGQAGVKVGSTRRWELESL------DHPAVKPLIEYKKLYRIWVAHGWSWLQDWVR 212

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGR R      G + TGRW         +P+                             
Sbjct: 213 DGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK----------------------------- 242

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R  ++A  G +LVVAD   +E RVLA I+ +   ++      D+Y +   +AF+   
Sbjct: 243 -VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRAFSGDR 301

Query: 422 DKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           D          K+  L   Y   +    K +A+                     + +A +
Sbjct: 302 D--------QAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVA 336

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
           +         E  +    +G  C                       G A   +E G    
Sbjct: 337 YVDDAARAGEEGRLVRTWLGRTCPPA-------------------AGAADGTEEAGLPQD 377

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                  R                 R      V+G  +         +R+          
Sbjct: 378 EAADAGDRAQEWVPGYASTNARARGRFARNFVVQGSAADWALLLLAALRQ---------- 427

Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
                  D+  E           +V   HDE++   P+    +V
Sbjct: 428 ----TCADMAAE-----------LVFFQHDEVIVHCPEEEAATV 456


>gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201]
 gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201]
          Length = 588

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/502 (12%), Positives = 120/502 (23%), Gaps = 134/502 (26%)

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERK 218
           AT    +RL  L   E    L+   +  RG   +  +  ++ E +              +
Sbjct: 168 ATARNPQRLERLLSLESQGALVAADMRHRGIPWNPAVHQQILEDMLGTRPAGEERPARMQ 227

Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-- 276
           +L +++         +      L   L    G+D+       L+     +   Q  +   
Sbjct: 228 ELAQEVRTALAAPALNPDSPVELLKALRNA-GVDVDTTRAFKLQEWTLVNGQPQEQRVAT 286

Query: 277 --LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L     S           +    +GR        G   TGRW+        +P+  
Sbjct: 287 VTPVLEYKKLSRVFSATGWHWLDTWVHEGRFHPEYV-VGGVVTGRWAARGGGALQIPK-- 343

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  + A  G  LVVAD A +E RVLA +A 
Sbjct: 344 ----------------------------YIRDAVRADPGHALVVADAAQLEPRVLAILAR 375

Query: 395 EDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
           +D   +A    +    +    +A  + +      +R+  K+  L   Y   +        
Sbjct: 376 DDALAEASRGRDLYTAIAEQGQARGSEL-----TERSHAKLALLGAMYGATSGA------ 424

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                + +A  +                 +G         W   
Sbjct: 425 ----------GGRFMPQLTRMFPRAVGYVEHAARVGELGHQVCTYLGRWSPAPGPEWFE- 473

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                     +         E  +  A R                               
Sbjct: 474 ----------VQRATDTQAGERRAAQASRSHGRFSRNF---------------------- 501

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627
                                      +VQ  + +     + +            ++V  
Sbjct: 502 ---------------------------VVQGSAAEWALAWLGHIRQGLHGADVDAELVFF 534

Query: 628 VHDEIVSETPDTPYFSVGTLCS 649
           +HDE++    +     V  +  
Sbjct: 535 LHDEVMVHCAEQHADRVQQIVE 556


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/560 (13%), Positives = 132/560 (23%), Gaps = 135/560 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M  L  DIET        V     A            D      ++  +  A    L + 
Sbjct: 1   MR-LVFDIETDGLLRGLSVIHCIVARD---------LDTNEEHRFEPHQTKAGLQLLKEA 50

Query: 61  LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-----NGL--------- 105
                     HN   ++    K+         +   T +L+R                  
Sbjct: 51  -----DELWGHNIVGYDIEAIKELYPKWTTKAKLYDTLILSRLFFTDLLDRDFRSKPANM 105

Query: 106 ------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   SL+     L       K E GK L                   +        
Sbjct: 106 PGNLYGRHSLEAWGHRLGV----HKSEFGKQL-----------------DGDWSTYSPEM 144

Query: 160 GEYCKRDVEATRELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            EYC +DV  + ++ +   P  +        E  L  +       G+  D+    +L+  
Sbjct: 145 LEYCAQDVTVSVQVAQMFEPKLEQYADCIDTEHRLATIMAWQEREGFPFDVTAAQQLESR 204

Query: 213 IAQERKKLDEDI--------------------------VKLTDGIIRSSRQTYALRMYLF 246
           +  E   L + +                            +      +    + +     
Sbjct: 205 LRTELDALSDQMRSTFLFVDGGTFTPRRNNKPQGYIADAPMCKLKEFNPTSRHHIAWAFQ 264

Query: 247 LITGIDLVDMS-----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                +  + +     +    ++ +       A   IL      G      N   +  S 
Sbjct: 265 QFRNWEPKEFTDSGKPKIDEPTLTAIGTDEAKAFARILELQKHLGQLAEGKNAWLKLESK 324

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+  +      + TGR +        +P                              
Sbjct: 325 -GRVHHSCVLN--TNTGRQAHMRPNLAQVPSASEY------------------------- 356

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R+     + +  V AD +G+E R LA          A  +      T      +T +
Sbjct: 357 ---RALFGPGDSRVQVGADASGLELRCLAHY-------LAPFDNGSFAETVVNGDIHTEL 406

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
             +    R  GK +   L Y GG     + A       Q   +  +            + 
Sbjct: 407 ASIYGTDRKSGKGVTYCLIYGGGDHKLGSTAGAS--KAQASKKGKEIRGRIMRDLDGFAA 464

Query: 482 HLWMQDQYPEFAVKDKLIGT 501
                 +     V   L G 
Sbjct: 465 LSDAVSRRARTGVLRGLDGR 484



 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 6/58 (10%)

Query: 597 LTENIVQAISRDILCEGMKN----ATKN--GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
               ++Q+    I  + +        +    Y  +  VHDE+      +       L 
Sbjct: 495 ALNYLLQSAGAVICKQWLLRSYELLDEANIDYWPLAFVHDELQISVAPSQAEMATLLI 552


>gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
 gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
          Length = 789

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/386 (11%), Positives = 97/386 (25%), Gaps = 69/386 (17%)

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +   +I K   + + +  D  +  +L    A+ T R S      QNLPR +  ++ +
Sbjct: 428 HEYNKDGSIKKTKGMLQYIGPDSIIHHSLN-VAATITARLSSSDPNLQNLPRSDEDDDGV 486

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            ++                            +   ++  D   +E  +LA ++G+   +K
Sbjct: 487 AKSRVKEMFTSRFG-----------------DDGVIIEVDYTALEVVMLAALSGDQALLK 529

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
              NG D++    A     P +++                                +   
Sbjct: 530 HLQNGTDMHCLRLAAKLKRPYEEI------------------------------LAIAKD 559

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
           +      S        +  S            A    +                   +  
Sbjct: 560 KHHPEHNSIKQQRTDIKPPSFAAQYGASASGIAFATGVSLEYATEFLATEARLFPRAIAF 619

Query: 521 WKDLTEGFACVVQEG-GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
              +            G +  +  A   R+  R + +       S R+    D +     
Sbjct: 620 RDVVRAEVERTGALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSFRQFDVWDAEARKRV 679

Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---------NGYDIVLTVHD 630
           +    +Q          +     Q  S  ++        +         +   ++  VHD
Sbjct: 680 MGFKPTQ----------IANYWCQGESGYLMTLSAGRVMRWLIQHPMFMSKIFMINNVHD 729

Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNP 655
            +  +        V     ++M   P
Sbjct: 730 ALYFDVHKDYLKEVAAAAKAIMEDAP 755



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 80/287 (27%), Gaps = 42/287 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--L 58
           M    +D+ET++   L  V   A+     I L  +  D       D    + +       
Sbjct: 1   MRTRILDLETQNHPYLGAV-ASAHCPDNYIVLAGWRDD------VDGVAGTPVERRFNNR 53

Query: 59  QYLRDET-------VMCVAHNSLFERILFK-KTLGIDIP----SKRWICTSVLARTNG-- 104
           +   D          + V HN+++E   F  +     +       R +CT +        
Sbjct: 54  EEADDPAWFNLDGVDLLVCHNAMYEMSWFITRYQPEFLKYLKRGGRVLCTQLGEYLCSHQ 113

Query: 105 ---LPSSLKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
               P+ L         +      K+   + ++      ++ S        +     + F
Sbjct: 114 TWTYPA-LNEVAQKHGGTPKVDGVKLLWEQGVLTADIDPALLSEYLIGPSGDIENTARSF 172

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK----LQELIAQ 215
             Y +        +++  +   +G              G  +D  +  +        +  
Sbjct: 173 --YGQMQYLTKMGMWRMFLERCEGMVAF----SFCEAAGLYVDQQVAQRNHAAQLLELEG 226

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLF---LITGIDLVDMSEG 259
             K++   + +L +    +    Y L   LF   +     +      
Sbjct: 227 INKQIFALLPELPETFEFNWGSDYHLSALLFGGEVKYDERVPRTDAD 273


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/467 (12%), Positives = 104/467 (22%), Gaps = 126/467 (26%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            + L  ++  + +    +      L   L    GI++    +  L+           A  
Sbjct: 213 LEALCAELRNILNSPSLNPDSPQDLMRALH-RNGIEVKSTRQWELQE------SKHPAIQ 265

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +L     S        +  +A   DGR        G   +GRW+        +PR    
Sbjct: 266 PLLAYKKLSRLHTANGWSWLDAWVRDGRFHPEYV-VGGVVSGRWASRGGGALQIPRN--- 321

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R+ + A  G KL+VAD + +E RVL  +A + 
Sbjct: 322 ---------------------------IRAAVHADPGHKLIVADASQLEPRVLVALAQDT 354

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              +A  + +                      RA  K+  L   Y               
Sbjct: 355 KMAEAARDKDLYAGIAAQGFGG---------DRAKAKIALLGAVYGATTG---------- 395

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                             + +A         +          +G +       W      
Sbjct: 396 ------ESGRLMPQLTRTYPRAVGFVEQAAREGEAGRTVTTRLGRSSPPPSAGWLRS--- 446

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                   +       +      +R       +V           L   RR + +     
Sbjct: 447 ------QQSTTAEEQRRADNLARSRGRFTRNFVVQGSAAEWAACWLAELRRRLRALRAE- 499

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636
                                        +                ++V  +HDE++   
Sbjct: 500 ---------------------------GSAA--------------GELVFFLHDEVMVHA 518

Query: 637 PDTPY--------FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           PD            +      LM          P+         Y K
Sbjct: 519 PDDAVDACISAIEEAATAAKELMFGRIP--VEFPVSVA--VVDSYDK 561


>gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567]
 gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567]
          Length = 579

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/451 (13%), Positives = 113/451 (25%), Gaps = 84/451 (18%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233
           E    L+   I   G   D  +       I            +  +L E I         
Sbjct: 169 ESAGSLVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHL 228

Query: 234 SSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L   L    G+++        +G  +   +      +  + IL          
Sbjct: 229 NPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWVLIEPILRYKKLYRIFT 287

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
               + +++   +GR R  L+  GA  TGRW         LP                  
Sbjct: 288 ANGWSWADSWVRNGRFRPHLEVGGA-ATGRWGASGGGALQLP------------------ 328

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +RS I+A  G+  +V+D + IE R+LA ++ ++    A    +   
Sbjct: 329 ------------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTD--- 373

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                 A    ++ V+  +RA  KV  LA+ Y G +     +                  
Sbjct: 374 -MYTGIAELARLEGVALTERAQAKVGLLAIMYGGRSGEIGALLP---------------- 416

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------------ 517
              + + +A                    +G       + ++                  
Sbjct: 417 HVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPTPDERFKRTVADRSTPAAESRAVSL 476

Query: 518 -LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV----LPSSRRLVYSD 572
                +              ++          L        +       L     L    
Sbjct: 477 SRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFLHDELLLCGPK 536

Query: 573 VKGDCSYLNTATSQLMRER-TYGGKLTENIV 602
           ++ +        S     R  +G    E  V
Sbjct: 537 LEAERVERILRESAAEAARLLFGTVPVEFPV 567



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 34/146 (23%), Gaps = 25/146 (17%)

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             V +L+    E      + G                           P  R       +
Sbjct: 416 PHVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSP-----------TPDERFKRTVADR 464

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----------GYD 623
              +     +  +   R+YG      +VQ  + +     M                    
Sbjct: 465 STPAAE---SRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTK 521

Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCS 649
           IV  +HDE++   P      V  +  
Sbjct: 522 IVYFLHDELLLCGPKLEAERVERILR 547


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 72/235 (30%), Gaps = 18/235 (7%)

Query: 29  VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            I   A+  +   + +  D +           ++ D   +   +++    +   +  G  
Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG-K 390

Query: 88  IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143
                +    + A         + ++       +++    +   GK       +      
Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            +   +   + A          D      LF+++      E  L ++   +   G ++D 
Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
             + +++   +   +++++ I +       +      L + LF   G+ ++   +
Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKQK 556


>gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 560

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 68/505 (13%), Positives = 135/505 (26%), Gaps = 120/505 (23%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           H+    L   Y ++     R     R+  L+  E    L+   +N  G     ++   + 
Sbjct: 127 HLPLADLLAVYAEQQRRHERAGHPDRMRLLTAAESAGMLVAAEMNRSGLPWRAEVHRAVL 186

Query: 211 ELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             +           +   +L +++       +R       ++   F   GI +    +  
Sbjct: 187 HDLLGERYAGGGEPRRLAELADEVSTAFGRRVRPDLPADVVKA--FAQAGIKVSSTRKWE 244

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           ++S+         A   +L         +    +  +    +GR R      G + TGRW
Sbjct: 245 IESV------DHPAVKPLLEYKKLYRIWVAHGWSWLQDWVREGRFRPEF-LAGGTVTGRW 297

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                    +P+                               +R  ++A  G +LVVAD
Sbjct: 298 VTNGGGGLQIPK------------------------------VIRRAVVADPGWRLVVAD 327

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
              +E RVLA I+ +   ++      D+Y +          D+     RA  K+  L   
Sbjct: 328 ADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DRAFSGDRAQAKLAVLGAV 379

Query: 441 YQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
           Y   +    K +A+                     + +A ++         E  +    +
Sbjct: 380 YGQTSGDGLKNLAAL-----------------RRRFPRAVAYVDEAARAGEEGRLVRTWL 422

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G  C                  +   E              +R A               
Sbjct: 423 GRTCPPA--------------ARATDEAAEEAGIPLSEDDTQRDAQQWVPGYASTNARAR 468

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                 R      V+G  +         +R+                            +
Sbjct: 469 -----GRFARNFVVQGSAADWALLLLAALRK--------------TCA-----------E 498

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSV 644
              ++V   HDE++   P+    +V
Sbjct: 499 LSAELVFFQHDEVIVHCPEEETAAV 523


>gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
 gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
          Length = 650

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 60/451 (13%), Positives = 111/451 (24%), Gaps = 84/451 (18%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233
           E    L+   I   G   D          I            +  +L E I         
Sbjct: 240 ESAGSLVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHL 299

Query: 234 SSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           +      L   L    G+++        +G  +   +         + IL          
Sbjct: 300 NPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWALIEPILRYKKLYRIFT 358

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
               + +++   +GR R  L+  GA  TGRW         LP                  
Sbjct: 359 ANGWSWADSWVRNGRFRPHLEVGGA-ATGRWGASGGGALQLP------------------ 399

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +RS I+A  G+  +V+D + IE R+LA ++ ++    A    +   
Sbjct: 400 ------------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTD--- 444

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                 A    ++ V+  +RA  KV  LA+ Y G +     +                  
Sbjct: 445 -MYAGIAELARLEGVALTERAQAKVGLLAIMYGGRSGEIGALLP---------------- 487

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------------ 517
              + + +A                    +G       + ++                  
Sbjct: 488 HVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRTVADRSTPAAESRAVSL 547

Query: 518 -LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV----LPSSRRLVYSD 572
                +              ++          L        +       L     L    
Sbjct: 548 SRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFLHDELLLCGPK 607

Query: 573 VKGDCSYLNTATSQLMRER-TYGGKLTENIV 602
           ++ +        S     R  +G    E  V
Sbjct: 608 LEAERVERILRESAAEAARLLFGTVPVEFPV 638



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 34/141 (24%), Gaps = 16/141 (11%)

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
             G    +    +    R         R  +    +     R     D +   +  + +T
Sbjct: 478 RSGEIGALLPHVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRTVADRST 537

Query: 585 SQLMRER-----TYGGKLTENIVQAISRDILCEGMKNATKN-----------GYDIVLTV 628
                       +YG      +VQ  + +     M                    IV  +
Sbjct: 538 PAAESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFL 597

Query: 629 HDEIVSETPDTPYFSVGTLCS 649
           HDE++   P      V  +  
Sbjct: 598 HDELLLCGPKLEAERVERILR 618


>gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 563

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/505 (12%), Positives = 125/505 (24%), Gaps = 144/505 (28%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L   E    L+   +N  G     D+   +   +           +   +L +++ 
Sbjct: 141 RMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVS 200

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       ++S+         A   +L      
Sbjct: 201 AAFGRRVRPDLPADVVKA--FAQAGVKVSSTRRWEIESV------DHPAVKPLLEYKKLY 252

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +    +  +    DGR R      G + +GRW         +P+             
Sbjct: 253 RIWVAHGWSWLQDWVRDGRFRPEFH-AGGTVSGRWVSHGGGALQIPK------------- 298

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 299 -----------------VIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 341

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464
            D+Y +   + F+   D          K+  L   Y   +    K +A+           
Sbjct: 342 TDLYQSVSDRVFSGDRD--------RAKLAVLGAVYGQTSGDGLKNLAAL---------- 383

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     + +A ++         E  +    +G  C                  +  
Sbjct: 384 -------RRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCPPA--------------ARTT 422

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            +            S     +                +P                     
Sbjct: 423 DDAVEEAGIPVAGGSGTSGGSGASGDSGEEAEGGRPWVP------------------GHA 464

Query: 585 SQLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIV 625
           S   R R  G      +VQ                     + +               +V
Sbjct: 465 SADARAR--GRFARNFVVQGSAADWALLLLAALRRALSDRAAE---------------LV 507

Query: 626 LTVHDEIVSETPDTPY-FSVGTLCS 649
              HDE++   P+      V  +  
Sbjct: 508 FFQHDEVIVHCPEEEARDVVAAIRE 532


>gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 577

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 64/505 (12%), Positives = 125/505 (24%), Gaps = 144/505 (28%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L   E    L+   +N  G     D+   +   +           +   +L +++ 
Sbjct: 155 RMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVS 214

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       ++S+         A   +L      
Sbjct: 215 AAFGRRVRPDLPADVVKA--FAQAGVKVSSTRRWEIESV------DHPAVKPLLEYKKLY 266

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +    +  +    DGR R      G + +GRW         +P+             
Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEFH-AGGTVSGRWVSHGGGALQIPK------------- 312

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 313 -----------------VIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464
            D+Y +   + F+   D          K+  L   Y   +    K +A+           
Sbjct: 356 TDLYQSVSDRVFSGDRD--------RAKLAVLGAVYGQTSGDGLKNLAAL---------- 397

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     + +A ++         E  +    +G  C                  +  
Sbjct: 398 -------RRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCPPA--------------ARTT 436

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
            +            S     +                +P                     
Sbjct: 437 DDAVEEAGIPVAGGSGTSGGSGASGDSGEEAEGGRPWVP------------------GHA 478

Query: 585 SQLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIV 625
           S   R R  G      +VQ                     + +               +V
Sbjct: 479 SADARAR--GRFARNFVVQGSAADWALLLLAALRRALSDRAAE---------------LV 521

Query: 626 LTVHDEIVSETPDTPY-FSVGTLCS 649
              HDE++   P+      V  +  
Sbjct: 522 FFQHDEVIVHCPEEEARDVVAAIRE 546


>gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
 gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
          Length = 555

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 63/507 (12%), Positives = 115/507 (22%), Gaps = 127/507 (25%)

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                               L   L  L   E    L    +   G     D+  +L   
Sbjct: 133 ADPLDAVLRVHAEQRRVAAGLPPSLRLLFAAESASALAGAEMTHFGLPWRRDVHEELLAD 192

Query: 213 IA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
           +           +   +L + I     G   +        +  F   G+D+       +K
Sbjct: 193 LLGPRTAPGVRPRRLAELADRITAAFGGRAVNPDNPA-SIVRAFAREGVDVPSARAWVIK 251

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +         A + +L     +   +    +  +A  +DGR R      G   +GRW+ 
Sbjct: 252 EL------DHPAAEPLLAYKELARLWVAHGWSWLDAWVADGRFRPDYV-VGGVVSGRWAT 304

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                  +PR                               +R+ + A  G +LV AD A
Sbjct: 305 RGGAALQIPR------------------------------SLRTAVRADPGWRLVAADAA 334

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            +E RVLA ++ +    +     +                      R   K+  L+  Y 
Sbjct: 335 QLEPRVLAALSRDRRLAEVAGEDDLYTTLAADSFHG---------DRGQAKIAMLSAMYG 385

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           G +     + +                     +  A  +      +     V    +G  
Sbjct: 386 GTSGGAAELLAVL----------------RRRFPDAVGYVERAAREGERGGVVRSRLGRT 429

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                +AW            D  +      +            V +         +   L
Sbjct: 430 SPAPSQAWHEA----TGSADDGEDALRRSQRAAREWGRFTRNFVVQASAADWTAALLGAL 485

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
              RRL     +                                                
Sbjct: 486 R--RRLHERAPE-----------------------------------------------A 496

Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLC 648
            +V   HDE++   P      V   + 
Sbjct: 497 HLVFFQHDEVLVHCPAGLAEVVCAEVV 523


>gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331]
          Length = 568

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/544 (14%), Positives = 143/544 (26%), Gaps = 137/544 (25%)

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTI 194
            +    S  ++      +    L   Y ++    T      R+  L+  E    L+   +
Sbjct: 115 AEPGTQSSLFEPRSGTDLPFEALLQVYAEQLRRHTAAEHPGRMALLTAAESAGMLVAAEM 174

Query: 195 NDRGYRIDLDLVLKLQELIAQERK-------KLDEDIVKLTDGIIRSSRQ-TYALRMYLF 246
           +  G     D+   +   +  ER        +L E   +++    R  R    A  +  F
Sbjct: 175 DASGLPWRADVHRAVLNELLGERYPGGGEPRRLAEAADEVSAAFGRRVRPDLPADVVKAF 234

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              GI +       L+++         A + ++                 +    DGR R
Sbjct: 235 AQAGIKVGSTRRWELEAL------DHPAVEPLIRYKKLYRVWTAHGWGWLQDWVRDGRFR 288

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                 G + +GRW+        +P+                               +R 
Sbjct: 289 PGY-QPGGTVSGRWTTNGGGALQIPK------------------------------VIRR 317

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            ++A  G +LVVAD   +E RVLA I+ +   ++   +  D+Y     +AF+   D    
Sbjct: 318 AVVADEGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFHGDRDH--- 374

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
                 K+  L   Y              G  L+  +                       
Sbjct: 375 -----AKIALLGAVY----------GQTSGDGLKNLAAL--------------------- 398

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
                                   R +    +    D     A   +EG  +        
Sbjct: 399 ------------------------RRRFPQAVAYVDD----AAKAGEEGRLVRTWLGRTS 430

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
           P  V      +  I   S         +   +Y  T        R  G      +VQ  +
Sbjct: 431 PPAVGADEDGEAGIPQESEEP---PSGEATGTYGFTPGYASSNARARGRFTRNFVVQGSA 487

Query: 607 RDILCE------------GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654
            D                GM        ++V   HDE++   P         +   + + 
Sbjct: 488 ADWALLLLAALRRALAAGGM------RAELVFFQHDEVIVHCP---AEEASAVVEAIREA 538

Query: 655 PSWA 658
              A
Sbjct: 539 GELA 542


>gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 571

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/490 (14%), Positives = 128/490 (26%), Gaps = 131/490 (26%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   +N  G     D+  ++   +           +   +L E++ 
Sbjct: 155 RMRLLTAAESAGMLVAAEMNRAGLPWRPDVHREVLRELLGERYAGGGEPRRLAELAEEVS 214

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       ++S+         A   +L      
Sbjct: 215 NAFGRRVRPDLPADVVKA--FARAGVRVKSTRRWEIESV------DHPAVKPLLEYKKLY 266

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +    +  +    DGR R     +G + TGRW         +P+             
Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEFLAHG-TVTGRWVTNGGGALQIPK------------- 312

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R   +A  G +LVVAD   +E RVLA I+ +   +      
Sbjct: 313 -----------------VIRRACVADPGWRLVVADADQMEPRVLAAISRDPGLMDVAGRP 355

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464
            D+Y     +AF+   +          K+  L   Y   +    K +A+           
Sbjct: 356 GDLYQAVSDRAFSGDRE--------QAKLAVLGAVYGQTSGDGLKNLAAL---------- 397

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     +  A  +         E  +    +G  C                     
Sbjct: 398 -------RRRFPHAVRYVDDAARAGEEGRLVRTWLGRTCPP------------------- 431

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                     G      +  + P    +   +                            
Sbjct: 432 --AAGDPDAAGEEAGIPQADDGPGAPEQGRGQGQETEWVPG-----------------YA 472

Query: 585 SQLMRERTYGGKLTENIVQAISRDI----------LCEGMKNATKNGYDIVLTVHDEIVS 634
           S   R R  G      +VQ  + D             +GM        ++V   HDE++ 
Sbjct: 473 STDSRAR--GRFARNFVVQGSAADWTLLLLAALRRTLDGMA------AELVFFQHDEVIV 524

Query: 635 ETPDTPYFSV 644
             P     +V
Sbjct: 525 HCPAAETDAV 534


>gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis]
 gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis]
          Length = 203

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 74/275 (26%), Gaps = 88/275 (32%)

Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT--YAKAFNTPIDKVSKEQRAIGKVMEL 437
           D   IE R+LA ++ +   ++ F +   I + T   ++    P  KV  ++R   K +  
Sbjct: 1   DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           ++ Y  G +                                                   
Sbjct: 61  SVIYGVGRERL--------------------------------------------GNTLC 76

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           +     +   +++  K  G+ +  +   E                              +
Sbjct: 77  VEPNEAKGFMESFLGKFPGINEFSRKCIE--------------------------DCNTN 110

Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
             +     R+     +K     + +   Q  R+          +VQ  + D+    M   
Sbjct: 111 GFVSTIFKRKRWIPHIKSRDFQIRS---QAERQA------VNFVVQGSAADLCKSAMIQI 161

Query: 618 TKN-------GYDIVLTVHDEIVSETPDTPYFSVG 645
                        ++L +HDE++ E  DT    V 
Sbjct: 162 VHALEKDVSLKARLLLQIHDELLLEVADTDIDRVK 196


>gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis]
 gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis]
          Length = 758

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 125/441 (28%), Gaps = 78/441 (17%)

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELF--------KRLIPLSDGERDLWLLDQT 193
               D   A+  +  + +  Y  +D      +                  +  L      
Sbjct: 21  QWKGDAEAASKSRDIEKYWAYNAKDTWHGARILVQQLRTAAPYTFANYKNKFKLTYPALY 80

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253
            N  G +ID++   +L+    ++       +         +      +  Y++ I G   
Sbjct: 81  CNFEGLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGASK 140

Query: 254 VDMSEG---TLKS-ILSHSNITQLAKDL---ILNRLASSGSAILKLNTLSEAVSSDGRLR 306
             + +    T +  +L+ +    L   L   IL    +  +     + L       GRL 
Sbjct: 141 PKIGKSKSGTDEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYDFLRFQ----GRLL 196

Query: 307 GTLQFYGASRTGRWSGC------VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
             L  +G + T R +          Q QN+P                             
Sbjct: 197 WALNPFG-TETERMACSASSLWCGTQVQNIPSYA-------------------------- 229

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNT 419
               +  ++A +G +L  AD +  E R  A+ A E   I A       +  T     FN 
Sbjct: 230 ----KQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIAALETAGRDFYRTLGTLFFNI 285

Query: 420 PIDKVSKEQRAIG-KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
           P ++V+   R    K +     Y  G K F               +N+     +E   + 
Sbjct: 286 PYEEVTDFFRNKVLKRIVHGTNYMMGGKTFT--------------ENIGIVVLYETAPKV 331

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538
               + + +   + A  +  I    + +   +      + + + ++          G  +
Sbjct: 332 ---GIKLVEIPTKDAEMEMTIRQFAKYLLDLYHEPFPRIRKWYGEIKTEV---ATTGYIV 385

Query: 539 SARRVANVPRLVMRRHKRDVH 559
           S           + R    + 
Sbjct: 386 SPLGHVRKCFGNITRDHNMLR 406


>gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum]
          Length = 191

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 55/198 (27%), Gaps = 30/198 (15%)

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
               A +  +   + + +   +   + G+ +             Q        R+     
Sbjct: 3   CHTLASQLNISEKSAQKLIDGFLNIYTGIQKFITTTVSTAHREGQIKTLNGHIRLLPALN 62

Query: 549 LV--MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
                     +      S ++  +            A ++  R+         +I+Q  +
Sbjct: 63  SKSIFSCVSANEFSCNWSKKQRNH-----------FAVTKAERQA------VNSIIQGSA 105

Query: 607 RDILCEGMKNATKNG--------YDIVLTVHDEIVSET-PDTPYFSVGTLCSL-MTKNPS 656
            +I    M    +            +VL  HDE++ E  P++     G L    M+    
Sbjct: 106 AEIAKLAMLAVDEAISSANIPGYARLVLHEHDELIYEIFPESSVKQFGVLIRQAMSSTGK 165

Query: 657 WAK-GLPLKAEGYEAKRY 673
           +    +PL  +      +
Sbjct: 166 YCNINVPLPVKLKIGPNW 183


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/429 (12%), Positives = 100/429 (23%), Gaps = 114/429 (26%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              + L  ++ +L +    +      L   L    GI++    +  LK        +  A
Sbjct: 216 ARLEALTTELRRLLNSPGLNPDSPQELMRALH-RNGIEVKTTRQWELKE------SSHPA 268

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            + +L     +           +A  ++GR +      G   +GRW+        +PR  
Sbjct: 269 IEPLLAYKKLARLHAANGWAWLDAWVNNGRFQPEYV-VGGVVSGRWASRGGGALQIPR-- 325

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  + A  G KL+VAD + +E RVL  +A 
Sbjct: 326 ----------------------------QIRGAVHADPGHKLIVADASQLEPRVLVALAQ 357

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +A  + +                      RA  KV  L   Y             
Sbjct: 358 DSKMAEAARDKDLYAGIAAQGFGG---------DRAKAKVALLGAIYGATTG-------- 400

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               + +A         +          +G +       W    
Sbjct: 401 --------ESGRLMPQLTRTYPRAVGFVEQAAREGEAGGTVTSRLGRSSPPPSDRWLQSQ 452

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
           +                 +      +R       +V           L   RR       
Sbjct: 453 KST---------TAEEQRRADAIARSRGRFTRNFVVQGSAADWAACWLAELRRR------ 497

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634
                + +A                                        +V  +HDE++ 
Sbjct: 498 --LRAMRSAGGPTGE----------------------------------LVFFLHDEVMV 521

Query: 635 ETPDTPYFS 643
             PD    +
Sbjct: 522 HCPDGSVDA 530


>gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
 gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus]
          Length = 158

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620
            RR     ++          +Q  R+          +VQ  + D+    M          
Sbjct: 2   GRRRPLPRIRAHDP---QLRAQAERQA------ANFVVQGSAADLCKMAMIRIFTAMATS 52

Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKA 665
                 ++  +HDE++ E  D+       L    M              +PLK 
Sbjct: 53  PTLTARLLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKV 106


>gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
          Length = 550

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 64/439 (14%), Positives = 105/439 (23%), Gaps = 128/439 (29%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
              L ++I +     + +           F   G D+       +K       I   A  
Sbjct: 202 LAALADEISQAFGFPV-NPDS-AVDVRAAFRRVGFDIESTRSWVIK------AIDHPAVR 253

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +L                 E      R        GA  +GRW+        +PR    
Sbjct: 254 PVLAYKELVRLHTANGWAWLEQWVRGNRFHAEY-LSGAVVSGRWATRGGGALQIPR---- 308

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      +R  ++A  G +L+VAD A +E RVLA I+ + 
Sbjct: 309 --------------------------VLRQAVVADPGYRLIVADAAQLEPRVLAAISADL 342

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                 A  +                      RA  KV  L   Y               
Sbjct: 343 VLQAISAEDDLYAGLAADGFGG---------NRAAAKVAMLGAMYGQTTG---------- 383

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                       ++    + QA  +            V   ++G AC     +W      
Sbjct: 384 ------EGGRLVSTLRARYPQAMGYVDGAARAGERGEVVHSVLGRACPPPGTSW------ 431

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
                         + ++  +                         P+ R L        
Sbjct: 432 ----------EAVRIGRQQDAT------------------------PAERTLA------- 450

Query: 577 CSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHD 630
                       R     G+ T   +VQA + D     +           G ++V   HD
Sbjct: 451 -----------DRLAGDRGRFTRNFVVQASAADWAAVWLAGLRTSLTEVAGAELVFFQHD 499

Query: 631 EIVSETPDTPYFSVGTLCS 649
           E++   P+     V  L  
Sbjct: 500 ELIVHAPEPVAEPVAGLIE 518


>gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 815

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/393 (13%), Positives = 111/393 (28%), Gaps = 71/393 (18%)

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                  +   V  +  +  TL     + T R S      QN+P+ ++SE       +  
Sbjct: 434 KTGHDKGMLTLVHPNDIVHHTLNMC-RTVTARLSSSDPNLQNIPKGQKSEAKTMFESRFG 492

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407
             G                        K++ +D + +E  V A +      I   A G D
Sbjct: 493 ADG------------------------KIIQSDFSSLEVYVQAMLTLCKQLIADLAAGID 528

Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
           ++               +KE+R   +V+ L                   + +    +   
Sbjct: 529 MHCMRL----------AAKEKREYDEVLMLC--------------KKGKVGVDLTQEERD 564

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527
                    ++ S            A    +     + +  A  A++  + + +    E 
Sbjct: 565 EWDYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQALADAEDARYPEIGEYF----EM 620

Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587
            A  ++E  + +   V +     ++      + V P  +R  Y   +   S         
Sbjct: 621 KADEIRETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGKRYSY---RESPSPKYMIERGR 677

Query: 588 MRERTYGGKLTENIVQAISRDILCEGM-KNATK----NGYD----IVLTVHDEIVSETPD 638
            R      ++    VQ    +++   M            +     +V TVHD    +   
Sbjct: 678 PRTGFVPTQIKNYEVQGTGGEVMKAAMWLAVRAFYYYKNFKGLALLVNTVHDAQYVDAHK 737

Query: 639 T-PYFSVGTLCSLM---TKNPSWAK--GLPLKA 665
           T    + G L + M   +    W     LP+  
Sbjct: 738 TVAVKAAGLLHACMVEASTLIEWWFKWELPIGV 770



 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 82/323 (25%), Gaps = 52/323 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--------LWDRTEQSA 52
           M     D+ET +           +  +  I    +   D  V+                +
Sbjct: 1   MKYTVFDLETTTHAAYKHK-ANPFIPENHIVAVGWRHGDTDVEARLADRADYLYAAPGCS 59

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERIL------------FKKTLGIDIPSKRWICTSVLA 100
            PS     L       V HN  F+ +              +  +   +       T ++ 
Sbjct: 60  QPSSWFTDLLKHGKWVVGHNIKFDLLYALANENSYPEQNLEAWMDWVVKGGLPWDTQIVE 119

Query: 101 RTNG--LPSS----LKNACLALNFSEHLTK------------MEEGKALIARF---CKGS 139
                  PSS    L    +    +  + +                + LI         S
Sbjct: 120 YLLRGMEPSSTMLPLDEVAVHYGGNTKVDEVKAMWEAGIDTWDIPRELLIDYLVGRTVPS 179

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199
            D    D    +      +F    KR  E       +L  +       ++    +   G 
Sbjct: 180 EDGEGEDFELGDIGNTELVFRAQLKRAKE-----QGQLRSII-LNMGAYVATIEMERNGM 233

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALRMYLFLITGIDLVDM 256
            ++    LKL E +A +  ++  ++       +    +    +     +F    +     
Sbjct: 234 HVNKAKGLKLAEKMAAKLIEMSAELAGFIPADLPFDFNWNSRFHKSALIFG-GKVKYEAR 292

Query: 257 SEGTLKSILSHSNITQLAKDLIL 279
           +    +         + A  ++L
Sbjct: 293 TAIVDEETGEQVYAQKDATHVLL 315


>gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 429

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 61/291 (20%), Gaps = 39/291 (13%)

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEGT---LKSILSHSNITQLAKDLI 278
                    + +      +   L    G        +G       +L            +
Sbjct: 41  QPFCKKRIEVFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKL--PYPEAKPL 98

Query: 279 LNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
              +          +      + VS DG + G +   G   TGR S        +P    
Sbjct: 99  AEYMLLKKRLGQIKDGNNAWIKLVSPDGYIHGDMVTNGC-ITGRCSHRNPNTAQIP---- 153

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                        RS   A +   L+ +D   +E R LA     
Sbjct: 154 -------------------AGYSPYGKECRSLFHAPDDWILIGSDAKALELRCLAGYLAF 194

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
                       +             +K   E R I K +  A+ Y  G     T+    
Sbjct: 195 WD----GGEYGQMVTDDSVDIHTYNQEKFGVETRDISKRLLYAVLYGAGFYKAGTIVDPD 250

Query: 456 GLDLQQFSQ--NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
             D     Q       S        +     + +          L      
Sbjct: 251 EKDPDILKQLGKTAINSFMTGVPALQELKNKLAENLVARGYLLGLDRRPLY 301


>gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93]
 gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93]
          Length = 811

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 59/533 (11%), Positives = 135/533 (25%), Gaps = 87/533 (16%)

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATR----ELFKRLIPLSDGERDLWLLDQTINDRG 198
            P D  +    + ++ +   C  DV   +    +  +++   +  E  +   +      G
Sbjct: 309 DPIDGAKYITPETYEKYRL-CPADVVVYKSGKNKGSRKVFRANTNELKMKWGEAVYQCPG 367

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
                  + +L E    +  +  E               +    M      G        
Sbjct: 368 LC----KISELPEHFQDKFGERGEFRQNRNLCDGSPVFSSSGDCMAGLAKQGFTFAS-DI 422

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYG 313
             L ++   +    L  +            I K + + + V  +     G +   L    
Sbjct: 423 SRLATLEKDTGTYYLRHEYDDE------GNITKSSGMLQYVIPEKPDGSGIIHHRLNTC- 475

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A+ TGR S      QNLPR E  ++   ++                              
Sbjct: 476 ATVTGRLSASNPNLQNLPRAEEDKDGNAKSRVKEMFTSRFG-----------------ED 518

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433
            +++  D + +E  +     G+   ++    G D++                        
Sbjct: 519 GRIIEVDYSALEVVMGVVHTGDMKLLELLKAGTDMHC----------------------- 555

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
                  Y+   +              +  +      +     +A S            A
Sbjct: 556 -------YRLAFQENLDYEEVYRRCHDEGFEFHALWKSMRTAIKAPSFAAQYGASAAGIA 608

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
                     +       A      +  + + +         G++      +    + RR
Sbjct: 609 FATGCTVEFAQAFLDNEAALFPDTAKFRQVIRDEVERTGNLPGNLKREMTDDGSVRLYRR 668

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG-GKLTENIVQAISRDILCE 612
                +   P+  R  YS  + +          + +   Y   +L     Q  +  ++  
Sbjct: 669 G----YWTSPAGMR--YSFRQVERWVKRADGRGMEKVMDYKDTQLANYWCQGEAFFLMAV 722

Query: 613 G--MKN---ATKNGYD----IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKN 654
              M       KN YD    ++  VHD    +  +      +   +  +M + 
Sbjct: 723 AFGMILRHMIAKNWYDNQVCLITNVHDAAYLDAANEEVGREAALAVKDIMERA 775



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 77/306 (25%), Gaps = 52/306 (16%)

Query: 4   LFIDIET------------RSPQP-LPKVGVWAYAEQA----VITLC-AYAWDDEPVKL- 44
           LF+D+ET              P   + + G     ++      +    +  +D     + 
Sbjct: 5   LFLDLETQNYEYHGSKASPYCPDNYIVESGFRVDRKKPDGTTEVGGIESVRYDSREAFVN 64

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICTSVL 99
              TE   +P D          + VAHN+ +E   F +              R  CT   
Sbjct: 65  APTTEWLPIPEDCW--------LIVAHNAAYEVSWFLQFARESFESFLRRGGRVFCTMHG 116

Query: 100 ARTN----GLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                    L  SL                K+   + ++       +          +  
Sbjct: 117 EYLATDQTSLYPSLDETAPKYGGTHKVDGIKLLWEQGVLTSEIDPILLHEYLAGPNGDVA 176

Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
                F   C    E      +   PL     D  L        G  +++ +  K Q + 
Sbjct: 177 NTALCFYGQCAVLAE------QGKFPLVWERMDALLSFAFCEWFGLYVNMPVAQKNQAVQ 230

Query: 214 AQERKKLDEDIVKLTDGIIR-----SSRQTYALRMYLF---LITGIDLVDMSEGTLKSIL 265
             E  +L   +       +      +    + +   L+   +     +       +K   
Sbjct: 231 EAEIAELTTRLRTYLPDDLPEEIDFNWGSDFHMSALLYGGPIKYKKKVHYDKPTYVKVDA 290

Query: 266 SHSNIT 271
              +  
Sbjct: 291 YQLHEH 296


>gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 363

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 105/376 (27%), Gaps = 80/376 (21%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---PSDLLQYL- 61
           +DIE      L       Y     + L    +  +            +     ++     
Sbjct: 12  LDIE---SDDLSA----QYDVDTRVYLIGVQFLADYGLY---AAGDYVYGSLEEMRDLCV 61

Query: 62  ---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLKNA-C 113
               D  V  V HN+ F+     +  GI I   R+ CT V A T    S    SL +   
Sbjct: 62  SLANDTDVTFVIHNASFDVPAL-RLRGIPIK--RYFCTQVAAHTWHPKSSEENSLDSLTG 118

Query: 114 LALNFS---EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           + L+     E      +GK       +   D      +  N      +F  Y   D++AT
Sbjct: 119 MKLDLRAELEVYRPDLKGKPK-GYEYRLYDDKSHRGWSTVND-----IFHSYLVSDLQAT 172

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDR----------GYRIDLDLVLKLQELIAQERKKL 220
            +L+  L      +         IN            G  +D+D V ++Q  +   R + 
Sbjct: 173 GKLYTTLEDNFSSDERALRCLLDINQPYVELIIEFEQGSWVDVDRVDEVQSKLQTLRDEA 232

Query: 221 DEDI--------------------------VKLTDGIIRSSRQTYALRMYL-----FLIT 249
             +I                                +  +   +  +   L     +  T
Sbjct: 233 WSEITTHIRYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPT 292

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
            +        T   +L   N   L   L+  +  +       +  +    + DG +    
Sbjct: 293 KLSDKTGKPSTSSEVLEELNYP-LVSSLVKYQKMAKLMQ--FIPQI--QANLDGNILRPS 347

Query: 310 QFYGASRTGRWSGCVF 325
               A+RT R S    
Sbjct: 348 YNQSATRTTRLSSSKP 363


>gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 538

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 120/476 (25%), Gaps = 139/476 (29%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233
           E    L+   +   G     D+   L   +              + L ++I       + 
Sbjct: 160 ESAGALIAAEMRHHGMPWRQDVHDALLTELLGPRPAPGMRPARLQALADEISAAFGHPV- 218

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +      L    F   GIDL       L+ +         A   +L     S        
Sbjct: 219 NPDSPQQLL-KAFKAAGIDLPSTRSHVLERV------DHPAVKPLLEYKELSRLHSFYGW 271

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
             +      GR        G   +GRW+        +P+                     
Sbjct: 272 AWAAQWVRGGRFHPEYV-VGGVVSGRWATSGGGALQIPK--------------------- 309

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R  ++A  G  LVVAD A +E RVLA ++G+     A A GE    +  
Sbjct: 310 ---------VMRRAVVADQGWTLVVADAAQLEPRVLAAMSGDAA--LARAAGEADLYSAL 358

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
           A+AF    +          K+  L+  Y G +     + +                   +
Sbjct: 359 AEAFGGSRES--------AKIAMLSAMYGGTSGDAPRLLAVM----------------RQ 394

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
            + +A +          E  V    +G  C    + WR                      
Sbjct: 395 RFPRAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRE----------------LTAGP 438

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
           +GG ++  R       V++    +  + L +  R +  D                     
Sbjct: 439 DGGRVARERGRFTRNFVVQATAAEWALTLLAVLRGLLPDP-------------------- 478

Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
                                         +V   HDE++   P      V     
Sbjct: 479 ----------------------------ARLVFFQHDEVMVHCPLHQAERVRAAVE 506


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 37/213 (17%)

Query: 76  ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
           +  +     G+ +P        +LA      ++  +                        
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                      + T     +A      +         E  + L    + ER L  +   +
Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWERLEGE-ERLLWLYREVERPLSAVLAHM 444

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
              G R+D+  +  L   +A+E  +L+ ++ +L      +      L   LF   G+   
Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503

Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRL 282
                  +  T  ++L          + IL   
Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYR 536


>gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 558

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/439 (14%), Positives = 120/439 (27%), Gaps = 72/439 (16%)

Query: 164 KRDVEATRELFK----------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
             D  A  EL +          RL+ L   E    L+   +   G     +   ++   +
Sbjct: 133 SLDATAEFELQRAAVANSTGSGRLLRLLAAESAGALIAAEMRFAGLPWSAEAHDRILTDL 192

Query: 214 A-----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262
                        + + L ++I +L D    +      L   L +  GI         LK
Sbjct: 193 LGPRPTMESARPSKVQDLVDEIRELLDAPQLNPESPSDLLRALNVA-GIQTNSTRAWELK 251

Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322
            +             +L+    +           ++   DGR R      G   TGRW+ 
Sbjct: 252 QL------RHPVISPLLHYKKLARLLTANGWNWLDSWVHDGRFRPDYVPGGV-VTGRWAT 304

Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382
                  LP                                +R  +I   G KLVVAD +
Sbjct: 305 SGGGALQLP------------------------------HLIRGAVIPDPGWKLVVADAS 334

Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442
            +E R+LA ++ +   ++A ++G+       +          + E RA  K+  L   Y 
Sbjct: 335 QLEPRILAAMSADRGMVEAGSSGDLYEGIVAS---------GAVETRAHAKLAMLGAMYG 385

Query: 443 GGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIG 500
                   +         +  Q    +    E  E   +       +  +     + L  
Sbjct: 386 ATTGESGRLMPKLARAYPRAIQLVEDAARAGERGEIVSTQLGRSSPRGEDTGTYDESLTP 445

Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
                +++  R+   G       +    A       +    R+ ++           +  
Sbjct: 446 AERAALRERGRS--WGRFTRNFIVQGTAAEWALCWMASIRSRLVSLGEGKWLTESPHLVF 503

Query: 561 VLPSSRRLVYSDVKGDCSY 579
            L     +   +   +   
Sbjct: 504 FLHDEVVVHAPEELAETVA 522



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 58/214 (27%), Gaps = 40/214 (18%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              M++  G+     S ++          +  +H          +       G     + 
Sbjct: 341 LAAMSADRGMVEAGSSGDLYEGIVASGAVETRAHAKLAMLGAM-YGATTGESGRLMPKLA 399

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
           +A+             L E  A   + G  +S +   + PR            + P+ R 
Sbjct: 400 RAYPRAI--------QLVEDAARAGERGEIVSTQLGRSSPRG--EDTGTYDESLTPAER- 448

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY----- 622
                            +   R R++G      IVQ  + +     M +           
Sbjct: 449 ----------------AALRERGRSWGRFTRNFIVQGTAAEWALCWMASIRSRLVSLGEG 492

Query: 623 -------DIVLTVHDEIVSETPDTPYFSVGTLCS 649
                   +V  +HDE+V   P+    +V  L  
Sbjct: 493 KWLTESPHLVFFLHDEVVVHAPEELAETVAALID 526


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 47/225 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D  L   L     +   +++ D+  L                      + +  
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60

Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L     +             +  L  ++    A  ++   L        ++N
Sbjct: 61  SRQQVAERLSAKGAVWTELTPTGKPMVDEKTLKENSHVPEAAQVLEYLLLQKR--YAQVN 118

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  E V  DGR+ G +   GA  TGR +        +P                      
Sbjct: 119 SWLEHVQDDGRVHGRVTTNGA-VTGRMTHQNPNMAQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                   +  R+C I   G+KLV  D +G+E R+LA   G++  
Sbjct: 156 -SVNSEYGEDCRNCWIVPEGRKLVGVDASGLELRMLAHYMGDEEF 199


>gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 49/223 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD-------------------GIIRSS 235
              G++++    L+L  ++  +   +  ++  +                         + 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                +   L            +G     + +L+  +    AK L    +      I ++
Sbjct: 61  GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASLDYP-EAKALAEYMMLQKR--IAQI 117

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  EAV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 118 DSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP--------------------- 155

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
             +         R       G KLV  D AG+E R+LA    +
Sbjct: 156 --NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMND 196


>gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 49/224 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD-------------------GIIRSS 235
              G++++    L+L  ++  +   +  ++  +                         + 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                +   L            +G     + +L+  +    AK L    +      I ++
Sbjct: 61  GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASLDYP-EAKALAEYMMLQKR--IAQI 117

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  EAV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 118 DSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP--------------------- 155

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
             +         R       G KLV  D AG+E R+LA    + 
Sbjct: 156 --NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 197


>gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis]
          Length = 158

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 45/181 (24%), Gaps = 53/181 (29%)

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555
             +       +K+ +     GV    + + E                             
Sbjct: 1   MGVTPKEAAKLKQEFLESMPGVAAFLEKVVEDCRQTGY---------------------- 38

Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615
               +   + RR    ++      L     +         K     +Q  + D++   M 
Sbjct: 39  ----VETLAGRRCPLPNINLQSWRLRGEAER---------KAVNTPMQGSAADVMKAAMI 85

Query: 616 NATKN---------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP--SWAKGLPLK 664
              ++         G  IVL +HDE+V E           +   M   P       +PL 
Sbjct: 86  ALGESLQIGQAGEGGAAIVLMIHDELVIEV-------AAIVRECMEVVPVRKLHLSVPLA 138

Query: 665 A 665
            
Sbjct: 139 V 139


>gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
 gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
          Length = 207

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 35/214 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    PL             + L         V         +   +L Q L +
Sbjct: 25  IAVDTETMGLNPLRD----------RLCLIQLCDPGGYVCAIRTERGQSSAPNLKQLLEE 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
           + +  + H + F+    +  LGI        CT + +   RT      LK+         
Sbjct: 75  KNITKIFHFARFDLATLQHHLGIVTAP--VFCTKIASKIARTYSPSHGLKSL-------- 124

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K   G   I                 ++          Y   DV     L  +L  +
Sbjct: 125 --VKELIG---IELDKSQQSSDWGNAAALSD------EQLSYAANDVRYLYVLQNKLTEM 173

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              E    L  Q ++     ++LD + +   +  
Sbjct: 174 LKREGRWTLAKQCLDCLPVFVELD-LRQFGSVFE 206


>gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 563

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/504 (13%), Positives = 126/504 (25%), Gaps = 156/504 (30%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   +N  G     +   ++   +           +   +L +++ 
Sbjct: 155 RMRLLTAAESAGMLVAAEMNRAGLPWSAETHRRVLHELLGERYAGGGEPRRLAELADEVS 214

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   GI +       ++S+         A   ++      
Sbjct: 215 AAFGRRVRPDLPADVVKA--FAQAGIKVKSTRRWEIQSL------DHPAVKPLVEYKKLY 266

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +    +  +    DGR R      G + TGRW         +P+             
Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEF-LAGGTVTGRWVTHGGGALQIPK------------- 312

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 313 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +          D+     RA  K+  L   Y              G  L+  +  
Sbjct: 356 SDLYQSVS--------DRAFSGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL 397

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                        R +    +    D  
Sbjct: 398 ---------------------------------------------RRRFPKAVAYVDD-- 410

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
              A   +EG  +        P         +  I              G+  ++    S
Sbjct: 411 --AARAGEEGRLVRTWLGRTCPPAAGAGDAEEAGIPQDDP---AGQPASGEDGWVPGYAS 465

Query: 586 QLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIVL 626
              R R  G      +VQ                     + +               +V 
Sbjct: 466 TNTRAR--GRFARNFVVQGSAADWALLLLAALRQACAGMAAE---------------LVF 508

Query: 627 TVHDEIVSETPDTPYFS-VGTLCS 649
             HDE++   P     + V  +  
Sbjct: 509 FQHDEVIVHCPKEEAEAVVAAIRE 532


>gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 47/231 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+D    L+  ++     +++++  +                      + +  
Sbjct: 1   ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +         +G     +  L   +I Q    LI   L      +  ++
Sbjct: 61  SRKQIAERLMGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AKLIAEYLMLQKR-VGMID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  + V               + TGR +        +P                      
Sbjct: 118 SWLKHVDKTTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                   + +RS      G  LV +DL+G+E R L+    ++   +   N
Sbjct: 156 -SVTKPYGEEIRSLWTVDEGNVLVGSDLSGVELRCLSHYMQDEEWQEELLN 205


>gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 226

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 56/214 (26%), Gaps = 43/214 (20%)

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
             T       +   +           A +  +     +   +++  +     +  +++  
Sbjct: 40  DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 99

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
             +         + RR  N                                    T +S 
Sbjct: 100 NASTTGFVHTINNRRRRINNL----------------------------------TDSSD 125

Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640
                        + +Q  + DI+   M    K       G  ++L +HDEIV E PD  
Sbjct: 126 KKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHL 185

Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
              V  TL  LM         +PL       K++
Sbjct: 186 LDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKW 217


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 37/209 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET        +G+    +   + +   +  D   +L    +      +L++ L 
Sbjct: 19  IVAIDTET--------LGLNHRRD--RLCVVQLSIGDGDAELVQIAKGQTQAENLVKLLV 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
           D  V+ + H + F+  +  KT G  +      CT + +   RT      LK+    L   
Sbjct: 69  DPKVLKLFHFARFDMGILAKTFG--VMPAPVYCTKIASKLTRTYTDRHGLKDLARELAGV 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E                K    S     T  +  QA      Y   DV    +L ++L  
Sbjct: 127 EIS--------------KQQQSSDWGAATLTDAQQA------YAASDVLYLHQLKEKLDA 166

Query: 180 LSDGE--RDLWLLDQTINDRGYRIDLDLV 206
           +   E   +L            R+DL   
Sbjct: 167 MLAREGRTELAQACFDFLPTRTRLDLAGW 195


>gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299]
 gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299]
          Length = 1659

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 24/148 (16%)

Query: 532  VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591
            V +GGS+  R                       SRR        +               
Sbjct: 1517 VADGGSVGPREGERPGPAGGEAGGSGPQKRNLYSRRFRLDRSADER-------------- 1562

Query: 592  TYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP-YFSVGT 646
                +      Q  + D++   M         +    VL +HDE++ E   +    +   
Sbjct: 1563 ----RAVNTACQGSAADVVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARA 1618

Query: 647  LCSLMTKN-PSWAKGLPLKAEGYEAKRY 673
            + ++M +    +   +PL  +      +
Sbjct: 1619 VRAIMERAGDEFGLTVPLPVKVSAGANW 1646


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 35/199 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ID ET        +G+  + +   + +   +  D    +    +      +L Q L D 
Sbjct: 23  AIDTET--------MGLNPHRD--RLCVVQMSPGDGSADVIQIAQGQREAPNLKQLLADP 72

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121
           T++ + H + F+        G  +  +   CT + +R          LK+    L     
Sbjct: 73  TIVKIFHFARFDLAALSNAFG--VMPQPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L     K    S     T ++   A      Y   DV     L  +L  + 
Sbjct: 126 ---------LNIELSKQQQSSDWGAQTLSDAQLA------YAASDVLHLHALRDKLDAML 170

Query: 182 DGERDLWLLDQTINDRGYR 200
             E    +          R
Sbjct: 171 ARENRTGMAQACFEFLPTR 189


>gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 566

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 74/514 (14%), Positives = 132/514 (25%), Gaps = 153/514 (29%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   +N  G     D+  ++   +           +   +L +++ 
Sbjct: 149 RMRLLTAAESAGMLVAAEMNSAGLPWRADVHRQVLHDLLGERYAGGGEPRRLAELADEVS 208

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   G+ +       L+S+         A + +L      
Sbjct: 209 AAFGHRVRPDLPAEVVKA--FARAGVKVRSTRRWELRSV------DHPAVEPLLEYKRLY 260

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +    +  +    +GR R      G + TGRW         +P+             
Sbjct: 261 RIWVAHGWSWLQDWVREGRFRPEF-LAGGTVTGRWVTNGGGALQIPK------------- 306

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 307 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRT 349

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +          D+     RA  K+  L   Y              G  L+  +  
Sbjct: 350 SDLYQSVS--------DRAFAGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL 391

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                        R +    +       
Sbjct: 392 ---------------------------------------------RRRFPRAVAY----V 402

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS------DVKGDCSY 579
           +  A   +EG  +        P              LP                 GD  +
Sbjct: 403 DEAARAGEEGRLVRTWLGRTCPPAAANSEDATQEAGLPQDDPAERPGGGSGDRTNGDRGW 462

Query: 580 LNTATSQLMRERTYGGKLTENIVQA---------------ISRDILCEGMKNATKNGYDI 624
           L    S   R R  G      +VQ                  RD+  E           +
Sbjct: 463 LPGYASSDARAR--GRFARNFVVQGSAADWALLLLAALRRTCRDMAAE-----------L 509

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658
           V   HDE++   P     +V      + +    A
Sbjct: 510 VFFQHDEVIVHCPKEEADTV---VEAIREAAELA 540


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 71/260 (27%), Gaps = 54/260 (20%)

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           +  Y     E  R+ F       D E D+          G+  D      L     Q  +
Sbjct: 9   WXVYEHIVAELDRQGFS--QQCRDLEHDVAKATAQQIANGFAFDFPTACNLYCEHEQRMR 66

Query: 219 KLDEDIVKLTD------------------GIIRSSRQTYALRMYLFLITGI---DLVDMS 257
           +++ ++  +                      + +      +   L     +         
Sbjct: 67  EIEAELQAIFPPIVEERWSEKTGKRLKDKVTVFNVASRQQVAERLAQKGAVWCDTTPSGK 126

Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
               ++ L  +     A  L+L  L         L    +AV  DGR+ G +   GA  T
Sbjct: 127 PKVDEATLKQNEKIAEAA-LVLEYLTLQKRY-GMLKNWLDAVQDDGRIHGRVNTCGA-VT 183

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR +        +P                                 R C +   G KLV
Sbjct: 184 GRMTHSSPNMAQIPSDSLY----------------------------RQCFVVPEGSKLV 215

Query: 378 VADLAGIEARVLAWIAGEDW 397
             D +G+E R+LA    +  
Sbjct: 216 GIDASGLELRMLAHYMDDPE 235


>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
 gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
          Length = 409

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 25/190 (13%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           ++ ET     L    +  Y E   + L   + + E   +         P  L   L +  
Sbjct: 52  LNTETTLAFDLEADSLHHYTE--KVCLIQVSTNSETALIDPLAPLDLSP--LAPILANPA 107

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           V  V H + ++     +  G ++       T + ++  G          AL       K 
Sbjct: 108 VRKVFHGADYDMRSLYRDFGFEVR--NLFDTMIASQFLGEKE--VGLAAAL-------KK 156

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
             G  L  ++ K      P+               EY  +D     +L+ +L      + 
Sbjct: 157 RFGVELDKKYQKADWSKRPFSP----------QMIEYAMKDTSLLIKLYLQLEDELRAKG 206

Query: 186 DLWLLDQTIN 195
            L  +++   
Sbjct: 207 RLAWVEEESE 216


>gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL
            Brener]
 gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            cruzi]
          Length = 1607

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/403 (12%), Positives = 96/403 (23%), Gaps = 84/403 (20%)

Query: 270  ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                  + IL                     +   V S          +  + TGR +  
Sbjct: 1232 HGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLASA 1291

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381
                QN+P++++S                           +R   ++  G+K   + AD 
Sbjct: 1292 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 1325

Query: 382  AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + +E   LA +A +   ++   +  D +    A       D    E     K        
Sbjct: 1326 SQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMMR---PDLQYTEVLLRAK-------- 1374

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                               +  S            +    L   
Sbjct: 1375 ---------------------KNKEPEFVKLRQQAKIFSFQRQYGAGVKMISQSTGLTQD 1413

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                + +  R  ++GV           A       +       NV      +    V   
Sbjct: 1414 QVRNLIEKERETYRGVDAFN----SMVALSANNFDASIQDGSRNVRGHQFFKGMFPVIT- 1468

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMK---- 615
                 R V+++       +   +            L    VQ  + +I  +  GM     
Sbjct: 1469 ---GSRYVFTESDVPEGIMREKSMSAKSTNFSPTHLKNYPVQGFAGEIVQIMLGMLWRHF 1525

Query: 616  ---NATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
               N       +  TVHD +  +     +  V   + ++M+  
Sbjct: 1526 LRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADEVETIMSNV 1568



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 84/309 (27%), Gaps = 65/309 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITL--------------------CAYAWDDEP 41
             L +D+ET + +   +V    + ++  + L                     A  +DD  
Sbjct: 498 RYLVLDLETTTVRRYKRV-ANPFTKENYVVLSGARDHTGKVFMAGRYFSRNIALRYDDFE 556

Query: 42  VK-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDI--PSKRWICTS 97
           V    D  + S+  S  L  L D  V+ V HN  F+   +++            +   T 
Sbjct: 557 VTSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTM 615

Query: 98  VLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
                        G  + L++   +                             +   + 
Sbjct: 616 YAEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKL---------------DAVKEAWAKGKE 660

Query: 151 NHVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
            +   + L  EY   D+E           R L +R + +     D  L    +   G + 
Sbjct: 661 TYEIPYALLSEYLHGDLENTELIFRKHMERALLQRQVIICTARMDGLLCTTEMEYNGLKT 720

Query: 202 DLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLF-LITGIDL 253
           ++ L +     +  +  +L   +                +      L  + F     ++ 
Sbjct: 721 NVQLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFFGGKLKLNT 780

Query: 254 VDMSEGTLK 262
                 TL 
Sbjct: 781 NARESKTLP 789


>gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 130

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           +  Y+    G  L+   +  L  +L    +    + LI  R     ++  K   L   V 
Sbjct: 1   MMDYISHDLGYPLMQFDKAILGEVLKDDTLPDTDRRLIEIRQQLGKTSTAKYAALKALVM 60

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
           +D R  G L ++GAS TGRWSG  FQPQNLPR       +   +      + +      +
Sbjct: 61  NDHRAHGLLMYHGAS-TGRWSGRHFQPQNLPRPSFKNTDVCIELFQYQNAQLLEMIYNDS 119

Query: 361 SDCVRSCIIAS 371
            + + SC+ A 
Sbjct: 120 MEALSSCLRAR 130


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +         P  L   L D
Sbjct: 25  IAIDTETLGLNP----------HRDRLCVVQISRGDGSADVVQIRPGDPEPVRLKAILAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H + F+  +  + LG  +      CT V ++          LK+    L
Sbjct: 75  PGVLKIFHFARFDLAVLFRALG--VMPAPVYCTKVASKLARTYTDRHGLKDVVREL 128


>gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    +L   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +         P  L   L D
Sbjct: 25  IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H + F+  +     G  +      CT + ++          LK+    L
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL 128


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 23/179 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + +   +  D    L    +    P  L + L D
Sbjct: 20  IAVDTET--------LGLEPHRD--RLCVVQISRGDGEADLVQIAKGGPEPVVLKRVLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
             V  + H + F+  +    LG  +      CT V +R          LK+    L   E
Sbjct: 70  PAVTKIFHFARFDLAVLFHRLG--VMPGPIYCTKVASRLSRTYTDRHGLKDLVRELLGIE 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                        +      ++               L     K D    RE    L  
Sbjct: 128 IS--------KQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAE 178


>gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 563

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 68/496 (13%), Positives = 122/496 (24%), Gaps = 156/496 (31%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233
           E    L+   +N  G     D+   +   +           +   +L +++       +R
Sbjct: 163 ESAGMLVAAEMNRTGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVSAAFGRRVR 222

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                  ++   F   G+ +       L+S+            LI          +    
Sbjct: 223 PDLPADVVKA--FAQAGVKVASTRRWELESV-----DHPAVAPLIE-YKKLYRIWVAHGW 274

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  +    DGR R      G + TGRW         +P+                     
Sbjct: 275 SWLQDWVRDGRFRPEF-LAGGTVTGRWVTNGGGALQIPK--------------------- 312

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R   +A  G +LVVAD   +E RVLA I+ +   ++      D+Y +  
Sbjct: 313 ---------VIRRAAVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS 363

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                   D+     RA  K+  L   Y              G  L+  +          
Sbjct: 364 --------DRAFSGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL-------- 397

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                                R +    +    D     A   +
Sbjct: 398 -------------------------------------RRRFPRAVAYVDD----AARAGE 416

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
           EG  +        P              +P           GD +++    S   R R  
Sbjct: 417 EGRLVRTWLGRTCPPAARTGDDAAEEAGIP---VADEGTPDGDRAWVPGYASTDARAR-- 471

Query: 594 GGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIVLTVHDEIVS 634
           G      +VQ                     + +               +V   HDE++ 
Sbjct: 472 GRFARNFVVQGSAADWALLLLAALRRTLAGMAAE---------------LVFFQHDEVIV 516

Query: 635 ETPDTPYFS-VGTLCS 649
             P+    + V  +  
Sbjct: 517 HCPEEEAETVVAAIRE 532


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 138/510 (27%), Gaps = 127/510 (24%)

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR----IDLDLV 206
              +         +R  +AT     R+  L   E    L+   +N  G      I  +++
Sbjct: 133 MSPEDLAEVYAAQRRRTDATSHP-DRMRLLLTSESAGMLVAAEMNAAGLPWRADIHREVL 191

Query: 207 LKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
            +L               +L E++       +R       ++   F   GI +       
Sbjct: 192 RELLGERYPGGGEPTRLAELAEEVSAAFGHRVRPDLPADVVKA--FARAGIRVGSTRRWE 249

Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
           ++S+         A   +L         +    +  +    DGR R     +G + TGRW
Sbjct: 250 IQSL------DHPAVRPLLEYKRLYRIWVAHGWSWLQNWVRDGRFRPEFHAHG-TVTGRW 302

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380
                    +P+                               +R  ++A  G  LVVAD
Sbjct: 303 VTNGGGALQIPK------------------------------VIRRAVVADPGHCLVVAD 332

Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440
            A +E RVLA I+ +   ++  A  +D+Y +          ++     RA  K+  L   
Sbjct: 333 AAQLEPRVLAAISRDPGLMEVAARADDLYQSVS--------ERAFSGDRAQAKLAVLGAI 384

Query: 441 YQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
           Y        K +A+                     + +A ++         E  +    +
Sbjct: 385 YGQTKGDGLKNLAAL-----------------RRRFPRAVAYVDEAARAGEEGRLVRTWL 427

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
           G  C                         A    E  +  A           R    D  
Sbjct: 428 GRTCPP-----------------------AAGAGEDAAEEAGIPQEEAGDGSRSVPGDAR 464

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
                +R  V      D + L  A  +                  ++ +           
Sbjct: 465 ARGRFARNFVVQGSAADWALLLLAALRRGCA-------------GLAAE----------- 500

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
               +V   HDE++   P     +V T+  
Sbjct: 501 ----LVFFQHDEVIVHCPVEEADAVVTVLE 526


>gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi]
          Length = 704

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 97/484 (20%), Gaps = 144/484 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277
               + ++ +      +   L     +        +      +L H  +         +L
Sbjct: 326 YTPVEHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385

Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   +  DGR+ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386
                                      +  R+   A         +    V  D +G+E 
Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNLKDGKPDPWIQVGVDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R L         +  +  GE +                    R   K       Y  G  
Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQMAAGLPTRDNAKTFIYGFLYGAG-- 533

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                       +            + +
Sbjct: 534 ------------------------------------------AAKIGQIVGGTAEDGKRL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            K +  +   +              ++E  + +  + +       +   +   +     R
Sbjct: 552 IKNFLEQTPAI------------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + GY
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGY 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                    ++  +HDE               +  +  +   W          L  EG  
Sbjct: 639 KHGWDGDFCLMGWIHDEQQLACRTEEI--AKVVIEVSQQAMHWVGDHFNFRCQLDTEGKM 696

Query: 670 AKRY 673
              +
Sbjct: 697 GPNW 700


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +         P  L   L D
Sbjct: 25  IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H + F+  +     G  +      CT + ++          LK+    L
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL 128


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +         P  L   L D
Sbjct: 25  IAIDTETLGLNP----------HRDRLCVVQISRGDGSADVVQIRPGDPAPERLKAVLAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             ++ + H + F+  +  K  G  +      CT V ++          LK+    L    
Sbjct: 75  PQIVKIFHFARFDLAVLFKAFG--VMPMPVYCTKVASKLARTYTDRHGLKDVVREL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +    +   +      ++               L     + D    RE
Sbjct: 129 ----VGVDLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLARE 176


>gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight]
          Length = 778

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 102/417 (24%), Gaps = 96/417 (23%)

Query: 288 AILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ KL+ + + V        G +   L    A+ T R S      QNLPR   S      
Sbjct: 425 SVKKLSGMLQYVIPMDDDGSGIIHHRLNTC-ATITTRLSSGNPNLQNLPRDGTS------ 477

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIK 400
                                V+    +  G   +++  D + +E  +     G+   + 
Sbjct: 478 --------------------KVKQMFTSRFGSAGRIIEVDYSALEVVMGCVHTGDLKLLH 517

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
               G D++    A   N P +    +   +    E    Y+   +              
Sbjct: 518 LLQTGTDMHCYRLAFRHNMPYE----DVLKLAVEDEDGPDYKMWKQR------------- 560

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
                           +  S            A    L    C+             ++ 
Sbjct: 561 ------------RTDIKPPSFAAQYGATAKGIAFATGLSLEFCQEFLDNEAKLFPDSIKF 608

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              + +         G +   +  +    V +      +   PS +R  +   K      
Sbjct: 609 RDVIRKEVERTGNLPGQLKREQNDDGSFSVYKVG----YWTSPSGQRYSFRQKKQWRDGR 664

Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-------NATKNGYDIVLTVHDE 631
            T   +         ++     Q  +  ++     M        +       ++  VHD 
Sbjct: 665 QTMDYK-------ATEMANYWCQGEAFFMMAVAFGMLIRHLIANDFYDGKVALMTNVHDA 717

Query: 632 IVSETPDTPYFSVGTL--CSLMTKNPS-----W-----AKGLPLKAEGYEAKR-YRK 675
              +  D        L    +M          W      K +P  A     +  Y K
Sbjct: 718 AYLDAADEVVGRQAALDTKRIMETARERILQFWPDYGILKDVPFPAAAEMGESMYSK 774



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 75/266 (28%), Gaps = 33/266 (12%)

Query: 6   IDIET-RSPQPLPKVGVWAYAEQAVITLCAY---------AWDDEPVKLWDRTEQSAMPS 55
           ID+ET        K     Y  Q  +   A+         + D  PV+    + +    +
Sbjct: 3   IDLETENYEYYGSKASP--YCPQNYVVESAWRYDRALSDGSTDVGPVQYVRYSSREEFIA 60

Query: 56  DLLQY--LRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN----G 104
              Q+  + D+  + VAHN+ +E   F                R  CT            
Sbjct: 61  AGSQWCPIPDDCWLIVAHNAAYEISWFLQFDRANFEAFLKRGGRVWCTMHGEYLVTDQQS 120

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +SL         +  +  ++       R  +  ID         N          Y +
Sbjct: 121 QYASLDETAPKYGGTHKVDGVKVLWEQGVRTSE--IDPMLLHDYLVNGDIPNTALVFYGQ 178

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER----KKL 220
                 R       PL     D  L        G  +D+    K Q+           +L
Sbjct: 179 YQKFTERG----QFPLIWERMDALLAFAYCEWFGLWVDMPTAKKNQKEQEARIAELKAEL 234

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLF 246
           ++ + +L +    +    + +   ++
Sbjct: 235 EQLLPELPETFEFNWGSNFMMSALIY 260


>gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVPAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 576

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 95/403 (23%), Gaps = 84/403 (20%)

Query: 270 ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                 + IL                     +   V S          +  + TGR +  
Sbjct: 201 HGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLASA 260

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381
               QN+P++++S                           +R   ++  G+K   + AD 
Sbjct: 261 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 294

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
           + +E   LA +A +   ++   +  D +    A       D    E     K        
Sbjct: 295 SQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMMR---PDLQYTEVLLRAK-------- 343

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                              +  S            +    L   
Sbjct: 344 ---------------------KNKEPEFVKLRQQAKIFSFQRQYGAGVKMISQSTGLTQD 382

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
               + +  R  ++GV      +            SI             +     +   
Sbjct: 383 QVRNLIEKERETYRGVDAFNSMV---ALSANNFDASIQDGSRNVRGHQFFKGMFPVIT-- 437

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMK---- 615
                R V+++       +   +            L    VQ  + +I  +  GM     
Sbjct: 438 ---GSRYVFTESDVPEGIMREKSLSAKSTNFSPTHLKNYPVQGFAGEIVQIMLGMLWRHF 494

Query: 616 ---NATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654
              N       +  TVHD +  +     +  V   + ++M+  
Sbjct: 495 LRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADEVETIMSNV 537


>gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     + + +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVAHYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    +D       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILN 204


>gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
 gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
          Length = 559

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 82/311 (26%), Gaps = 76/311 (24%)

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P +     +  +       G   A     +   +R  ++A  G +LVVAD   +E RVLA
Sbjct: 277 PGRPLPPRVHPRRHPHRPLGHPTAAGPCRSPKVIRRAVVADPGWRLVVADADQMEPRVLA 336

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            I+ +   ++     ED+Y     + F+   D          K+  L   Y         
Sbjct: 337 AISRDPAFMEVAGRPEDLYTAVSRQGFSGDRD--------KAKIAVLGAVY--------- 379

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G  L+  +                                               
Sbjct: 380 -GQTSGDGLKNLAAL--------------------------------------------- 393

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
           R +    +    D     A   +EG  +        P  V      +  I          
Sbjct: 394 RRRFPRAVAYVDD----AARAGEEGRLVRTWLGRTCPPPVGAAEADEAGIPQEQGPERA- 448

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD--ILCEGMKNATKNGYD--IVL 626
                +  +  +  S   R R  G      +VQ  + D  +L          G    +V 
Sbjct: 449 --DSAETGWTPSYASANTRAR--GRFTRNFVVQGSAADWALLMLAALRQATAGMRAELVF 504

Query: 627 TVHDEIVSETP 637
             HDE++   P
Sbjct: 505 FQHDEVIVHCP 515


>gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P]
 gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P]
          Length = 704

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 82/768 (10%), Positives = 166/768 (21%), Gaps = 175/768 (22%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69
              +   G+     Q     CA  +D    +              +  L  E     + V
Sbjct: 3   LSDIETNGLLHNVSQFH---CAVTYDYTTDQYIRYRPDDF--GAYIDALEAEVARGGLIV 57

Query: 70  AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105
            HN   ++  +     KK LG  +  P +  + T V++R                     
Sbjct: 58  FHNGHKYDIPVIELLAKKLLGRDVKFPKENVLDTLVMSRLIYSNIKDTDAGLLRSGKLPG 117

Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFG 160
                 +L+     L   +   K            K S+     +         + +   
Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD---------DFKASLAESGEEYVDGMEWLLFNEDMM 168

Query: 161 EYCKRDVEATRELFKRL-------------------------IPLSDGERDLWLLDQTIN 195
           EY  +DV  T+ LF++L                         +     E D   L   + 
Sbjct: 169 EYNVQDVVVTKALFEKLCSNTFYFPNETPAGSTEADRFWNGSLEAVKLEHDAAWLLAKME 228

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G+ ID+  +  L   +A  R +L  ++         +   T A R      TG  L  
Sbjct: 229 RNGFPIDIKSLENLYAELAGRRGELLVELTNTFGSWYSAKGGTEAFR---HPRTGKPLTK 285

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG-- 313
                                              K     E    D R       Y   
Sbjct: 286 ----------------YPRVKYPKQGGIFKKPKNKKQREGLEPCELDTRDYVEGAPYTPV 329

Query: 314 ------------ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL-- 359
                        +R    +G V   +  P      +        ++  +       +  
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVP-VEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKE 388

Query: 360 ---ASDCVRSCIIASNGKKLVVADLAGIEARV-------------LAWIAGEDWKIKAFA 403
                  +       NG   ++ D   I   V                +A       A+ 
Sbjct: 389 YLMIQKRIGQVAEGDNGWLRMIGDDGRIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYG 448

Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463
                         +   D   +       +    LG+                      
Sbjct: 449 EPCRAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYRYDEGEYVETILTGDIHTK 508

Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523
             + +     D  +   +         +            + + K +  +   +      
Sbjct: 509 NQLAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAI------ 562

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                   ++E  + +  + +       +   +   +     R++               
Sbjct: 563 ------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRSPHA-------- 608

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD--------IVLTVHDE 631
                            ++Q+    I    +        + G           +  VHDE
Sbjct: 609 -------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFAYMAWVHDE 655

Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYEAKRYR 674
           I  +           +  L  +              L  EG     ++
Sbjct: 656 I--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701


>gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 34/204 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  Y +   + L     D   V      +      +L   +  
Sbjct: 25  IAIDTET--------MGLNPYRD--RLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEA 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             +  V H + F+    +   GI+     + CT + +   RT      LK     L    
Sbjct: 75  PEITKVFHFARFDLAQLRHVFGIETRP--FFCTKIASKLGRTYTSSHGLKALVKEL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                              +D         N         +Y   DV     + ++L  +
Sbjct: 129 ---------------MGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAM 173

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
              E    L+++ +      I LD
Sbjct: 174 LQRENRWPLMEECLRCLPTFISLD 197


>gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 50/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     I   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKXIARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RSC     G  LV  D +G+E R+LA    ++ 
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G ++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 2   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 61

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     + + +      + ++
Sbjct: 62  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVAHYMMLQKR-VAQI 117

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 118 DSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVP--------------------- 155

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    +D       N
Sbjct: 156 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILN 205


>gi|257068677|ref|YP_003154932.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
 gi|256559495|gb|ACU85342.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
          Length = 590

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 101/443 (22%), Gaps = 141/443 (31%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +   ++ +     +        L   L    GID+   S+  LK           A
Sbjct: 222 RRMVETGAEVREALGDPLVPLDSAPKLLRALH-RAGIDVASTSQWELKE------HQHPA 274

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L     S        T  +    +GR R      G   TGRW+        +PR  
Sbjct: 275 IAPLLQYKKMSRLLTANGWTWLDEWVHEGRYRPLYVPGGV-VTGRWASSGGGALQIPR-- 331

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  + A  G  LV AD++ +E RVLA ++G
Sbjct: 332 ----------------------------QLRPALRADPGWLLVSADVSQLEPRVLAAMSG 363

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +   I A A  +       A   +T  +          K+  L   Y G           
Sbjct: 364 DRAMIAAGAGRDLYSGIVEAGVVSTRQE---------AKIGVLGALYGGTTGD------- 407

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
            G  + +  Q          +  A                    +G +     + W    
Sbjct: 408 SGRVVPRLRQ---------TFPDAMRLVDDAAATGERSGTVTTWLGRSSPAPDEEWIRA- 457

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
                           V    G+    R A   R    R                     
Sbjct: 458 ----------QRAAHQVDAPAGARERARRAARDRGRFTR--------------------- 486

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM--KNATKNG----------- 621
                                     +VQ  + +     M        G           
Sbjct: 487 ------------------------NFVVQGTAAEWALSWMAALRLRLAGFPAVPEPEAAA 522

Query: 622 ---------YDIVLTVHDEIVSE 635
                      +   +HDE++  
Sbjct: 523 PSGPVFSRRAHLAFFLHDEVIVH 545


>gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L+  ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFKKKTEKGNVIVDEKVLNSIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G +LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 30/169 (17%)

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGS 287
              +      +   L            +G     + +L+  +    AK L    +     
Sbjct: 57  EPFNPGSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASLDYP-EAKALAEYMMLQKR- 114

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
            I ++++  EAV  DGR+ G +   GA  TGR +        +P                
Sbjct: 115 -IAQIDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP---------------- 156

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                  +         R       G KLV  D AG+E R+LA    + 
Sbjct: 157 -------NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 198


>gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
 gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
          Length = 1444

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/404 (9%), Positives = 83/404 (20%), Gaps = 108/404 (26%)

Query: 278  ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            I     S       +  L + +  +  ++       GAS TGR S      QN+  + R 
Sbjct: 1016 IKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGAS-TGRLSCDQPNLQNIHSRFRC 1074

Query: 337  EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
               L    +         +                            I            
Sbjct: 1075 AISLKGKEENDTHDNNNNNNNIP-----------------------QIHISTNNVSTNNV 1111

Query: 397  WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
                  +      +           D    E   +       L +          +    
Sbjct: 1112 PMNIMSSTYPLYTMNKKNLIT---FDYKQMELFVMAY-----LSFDEQLLKLLNYSDVFI 1163

Query: 457  LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
               +        T+      +   + +         A    +  T    + + +      
Sbjct: 1164 ETAKVLFNTNDVTNELRRMTKTVIYGILYGQTENGLAKSLLISDTLASNLIENFFQFFPN 1223

Query: 517  VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
            V +  +        +      I  +R                 I+LP+            
Sbjct: 1224 VYRFMQMQKFLVKHMNCVYTLIGRKR-----------------IILPN------------ 1254

Query: 577  CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------------------- 616
                        R            +Q  + DI+   + +                    
Sbjct: 1255 -------IKNKYRISM------NTPIQGCAADIMKFSLLSCFSVLNNNIYNNNKLLKMNN 1301

Query: 617  -----ATKNGYDI-----VLTVHDEIVSETPDTPYFSVGTLCSL 650
                   KN   +     +L VHDE++ E   + + +   +  L
Sbjct: 1302 INPLIIHKNQAFLNPTNLILQVHDELLLE---SEHDATKYIIQL 1342


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 23/177 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D  V L           +L + L D
Sbjct: 25  VAIDTET--------MGLNPHRD--RLCLVQLSAGDGAVHLVQFRPGRYEAPNLKRLLTD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V  + H + F+  + K  LG+D       CT V ++          LK+ C  L   E
Sbjct: 75  PGVTKLFHFARFDVAVMKAYLGVDCRP--VYCTKVASKLVRTFTDRHGLKDLCKDLLGVE 132

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        +           D  +        L     K DV   RE    L
Sbjct: 133 IS--------KQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTHL 181


>gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 564

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/504 (13%), Positives = 125/504 (24%), Gaps = 155/504 (30%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   +N  G     D+   L   +           +   +L +++ 
Sbjct: 155 RMRLLTATESAGMLVAAEMNAAGLPWRADVHRDLLNELLGERYAGGGEPRRLAELTDEVS 214

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R    T  ++   F   GI +       ++S+         A   +L      
Sbjct: 215 AAFGRRVRPDLPTDVVKA--FAQAGIKVRSTRRWEIESV------DHPAVKPLLEYKKLY 266

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +    +  +    DGR R      G + TGRW         +P+             
Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEY-LPGGTVTGRWVTNGGGALQIPK------------- 312

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++     
Sbjct: 313 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D+Y +          D+     RA  K+  L   Y              G  L+  +  
Sbjct: 356 SDLYQSVS--------DRAFSGDRAQAKLAVLGAIY----------GQTSGDGLKNLAAL 397

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                        R +    +    D  
Sbjct: 398 ---------------------------------------------RRRFPKAVAYVDD-- 410

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
              A   +EG  +        P              +P               ++    S
Sbjct: 411 --AARAGEEGRLVRTWLGRTSPPAAGASEDSAEEAGIPQDE--PAPSSGAAQEWMPGYAS 466

Query: 586 QLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIVL 626
              R R  G      +VQ                     + +               +V 
Sbjct: 467 TNSRAR--GRFARNFVVQGSAADWALLLLAALRRACAGLAAE---------------LVF 509

Query: 627 TVHDEIVSETPDTPYFS-VGTLCS 649
             HDE++   P     + V  +  
Sbjct: 510 FQHDEVIVHCPAEEADTVVAAIRE 533


>gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/484 (11%), Positives = 104/484 (21%), Gaps = 144/484 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     I      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L        +          V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSSEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                     +  VHDEI           V  +  +  +   W          L  EG  
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKM 696

Query: 670 AKRY 673
              +
Sbjct: 697 GPNW 700


>gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L+  ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFKKKTEKGNIIVDEKVLNSIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G +LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 76/242 (31%), Gaps = 42/242 (17%)

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGI 251
             +D    + L E    +  +L + +         L     R+      ++   F   G 
Sbjct: 1   MAVDTRAWVALAESAGADHARLADAMDAAAPNPRALPGRETRNWDSPSQVKA-AFAQLGF 59

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
               ++       L+          L+    A++           E    DG +  +   
Sbjct: 60  ---ALAATDDDDTLAGIAHP--LGALVREYRAAAKRLSTYGRVWVEKHVQDGAVLPSWNQ 114

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA   GR S      Q +PR                                R C  A 
Sbjct: 115 LGAES-GRMSCSDPNLQQVPR----------------------------GSAHRRCFTAR 145

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
               LV AD +  E R+ A +A E   + A+A+G D++  T A+  N   D V+K+ R +
Sbjct: 146 PEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTAARVLNKDEDAVTKDDRQL 205

Query: 432 GK 433
            K
Sbjct: 206 AK 207


>gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02]
          Length = 214

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 32/205 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E          G+        ++L  ++  +    +     +     ++ + L +
Sbjct: 29  LAIDTE--------GSGLQIPHRD-KLSLVQFSTGNNDAYIIQPNRKDYKAPNIKKILEN 79

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSE 120
           + +  + H   ++    +  L      K    T + ++          LK+  L      
Sbjct: 80  DKITKIGHYLRYDISGLEYFL--KCNVKNIFDTKLASKLCRTYSQNHGLKDLALEF---- 133

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  GK L  R           D  +            YC  DV    ++   L  +
Sbjct: 134 ------CGKKLDKRL-------GSSDWNKNLDELTDAQLQ-YCSNDVIYLHKIKDELYKM 179

Query: 181 SDGERDLWLLDQTINDRGYRIDLDL 205
              E  L L +  I     RI LD 
Sbjct: 180 LVRENRLELYENCIKFLKTRIKLDQ 204


>gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     + + +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVAHYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    +D       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILN 204


>gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G +LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
 gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
          Length = 570

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 91/366 (24%), Gaps = 75/366 (20%)

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                +         +       AT+    RL  L   E    L+   +   G   D   
Sbjct: 140 APADGDGPDLLAELRDQLDAVTGATQP--GRLRLLLAAESGGALVAAEMQHDGLPWDPVR 197

Query: 206 VLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             +L   +           +  ++L   I +L      +      L   L    G  L  
Sbjct: 198 HDELLTDLLGPRPVGGGRPRRLEELVTTIRELLADPHLNPDSQPHLLAALR-RQGFSLSS 256

Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315
            S+  ++ +             +L     S           ++   DGR R      G  
Sbjct: 257 TSKWEVREL------DHPVVAPLLEYKKLSRLLSANGWAWLDSWVRDGRFRPAYV-VGGV 309

Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375
            TGRW+        LP                                +R+   A +G +
Sbjct: 310 VTGRWATDGGGALQLP------------------------------ASLRAAARADDGWR 339

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           LVVAD A +E RVLA ++G+     A            +  +    D  +   R   K  
Sbjct: 340 LVVADAAQLEPRVLAAMSGDRAMADAARG---------SDLYQRIADAGTVPTRTDAKYA 390

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
            L   Y                     S  +        + QA +               
Sbjct: 391 LLGAIYGATTG----------------SAGMLMPRLARAYPQAVALVEAAARAGERGETV 434

Query: 496 DKLIGT 501
              +G 
Sbjct: 435 STWLGR 440



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 24/173 (13%)

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
               +Y            +  ++       +   +     L E  A   + G ++S    
Sbjct: 384 RTDAKYALLGAIYGATTGSAGMLMPRLARAYPQAVA----LVEAAARAGERGETVSTWLG 439

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
              P                            + +  +       R R  G      +VQ
Sbjct: 440 RTSPPASAAFLD-------------RLGAAGAEGADPDDVRDARRRARDRGRFTRNFVVQ 486

Query: 604 AISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
             + +     + +  +           +V  +HDE+V  +P     +V T   
Sbjct: 487 GTAAEWALCWLASLRRRLREIGDGRARLVFFLHDEVVVHSPAQDADAVATAVR 539


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 27/189 (14%)

Query: 4   LFIDIETRSP--QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           L  D+ET +     L    + +Y E   + L  + + D  V L         P  L   L
Sbjct: 16  LAKDLETCAVFAVDLEADSMHSYQE--KVCLLQFTYHDTTVLLDPLAAGDLAP--LKPVL 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D ++  + H + ++     +   I+I       T + ++              L   + 
Sbjct: 72  ADSSIRKIFHAADYDIRCLARDFDIEIRG--LFDTMIASQ-------------FLGEEKV 116

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 GK     F         +     +          Y   D     +L   L P  
Sbjct: 117 GLADVLGK----YFDVTLDK--RFQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILEPAL 170

Query: 182 DGERDLWLL 190
             +  LW +
Sbjct: 171 KEKDRLWWV 179


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 113/430 (26%), Gaps = 118/430 (27%)

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           +  +L E I    +    +     ++   L    G+D+          +L H +   +A 
Sbjct: 211 KLAELAERITAAFNDPTVNPDHPGSIVRALR-RDGVDVPSTR----AHVLRHVDHPAIAP 265

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +L     +           +    DGR R      G   +GRW+        +P+   
Sbjct: 266 --LLEYKELARLHSAHGWAWLDQWVRDGRFRPVYV-VGGVVSGRWASRGGAALQIPK--- 319

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                                       +R C+ A  G  LVVAD A +E RVLA ++G+
Sbjct: 320 ---------------------------LLRGCVRADPGWTLVVADAAQLEPRVLAALSGD 352

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               +  A+ +     T+     TPI+    + RA  K+  L+  Y G +          
Sbjct: 353 RRLAEVSADADLYTSLTHTLFGRTPIE----DDRARAKIAMLSAMYGGTSG--------- 399

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
                        +     +  A S       +     +    +G       +AWR    
Sbjct: 400 -------EAAPLLSLLRRRFPHAVSFVEHAAREGERGGLVRSRLGRTSLPPPEAWRTLTG 452

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
           G                ++ G             V++    D   VL ++ R        
Sbjct: 453 G-----SGDENSARRAARDWG-------RFTRNFVVQASAADWTAVLLATLRRRLPAP-- 498

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                                                           +V   HDE++  
Sbjct: 499 ----------------------------------------------AHLVFFQHDEVLVH 512

Query: 636 TPDTPYFSVG 645
            P      V 
Sbjct: 513 CPTELAGQVQ 522


>gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +     A  ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 70/225 (31%), Gaps = 50/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVXDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RSC     G  LV  D +G+E R+LA    ++ 
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|228969098|ref|ZP_04130012.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790587|gb|EEM38274.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 388

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 95/391 (24%), Gaps = 85/391 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------S 51
           FID ++    P              I      + D                         
Sbjct: 12  FIDTKSTGSNPFKDS----------IISITIGFMDNSFFYIPIKPFKHRLSQNISTLSLE 61

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
                L   L  +  + +  NS             DI    +  T + A          +
Sbjct: 62  YTMKKLSPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHPKGV 120

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K                  K  I                          F  Y    +++
Sbjct: 121 KEWYKEYVLPR-----LISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKS 175

Query: 170 TRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQE 216
             E  KR+                + E  L  +  T   +G +I+ + +   +++++  +
Sbjct: 176 VFEYQKRIFENPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKINEEFLSNDVKQILQAK 235

Query: 217 RKKLDEDIVKLT-------------------------DGIIRSSRQTYALRMYLF----- 246
            + + ++I+                               + +      L   L+     
Sbjct: 236 LQSVKKEILNHLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAI 295

Query: 247 -------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
                        L+   +   K+++ + ++  +   ++  R      +    N+L +  
Sbjct: 296 LKPIMEYDKGCKSLISKLKTDRKTLIRNLSMHPVIPLILEYRRLVKLISS-FCNSLPKEQ 354

Query: 300 --SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             + D ++       G ++TGR S      +
Sbjct: 355 QGTIDNKIHPIYNSVG-TKTGRMSCSSPNLK 384


>gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 47/224 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D++    L+  +A     +++++  +                      I +  
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +         +G     +  L   +I Q    LI   L      +  ++
Sbjct: 61  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AQLIAEYLMLQKR-VGMID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
              + V               + TGR +        +P                      
Sbjct: 118 AWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                   + +RS     +G  L   DL+GIE R LA    +D 
Sbjct: 156 -SVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDE 198


>gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 47/224 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D++    L+  +A     +++++  +                      I +  
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +         +G     +  L   +I Q    LI   L      +  ++
Sbjct: 61  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AQLIAEYLMLQKR-VGMID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
              + V               + TGR +        +P                      
Sbjct: 118 AWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                   + +RS     +G  L   DL+GIE R LA    +D 
Sbjct: 156 -SVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDE 198


>gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 211

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 47/224 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D++    L+  +A     +++++  +                      I +  
Sbjct: 2   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61

Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +         +G     +  L   +I Q    LI   L      +  ++
Sbjct: 62  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AQLIAEYLMLQKR-VGMID 118

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
              + V               + TGR +        +P                      
Sbjct: 119 AWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 156

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                   + +RS     +G  L   DL+GIE R LA    +D 
Sbjct: 157 -SVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDE 199


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + +   +  D    +    +    P  L + L D
Sbjct: 20  IAVDTET--------LGLEPHRD--RLCVVQISHGDGEADVVQIPKIGPEPVVLKRVLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V  + H + F+  +    LG  +      CT V +R          LK+    L   E
Sbjct: 70  PAVTKIFHYARFDLAVLYHRLG--VMPGPVYCTKVASRLARTYTDRHGLKDLVRELLGVE 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      D+               L     K D    RE
Sbjct: 128 LS--------KQQQSSDWGADTLTPAQIDYAASDVLHLHALRAKLDAMLARE 171


>gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 63/223 (28%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+  D     ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGFAFDFPRACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC     G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVDEGNKLVGIDASGLELRMLAHYMDDPE 193


>gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017]
 gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017]
          Length = 209

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 34/202 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D ET        +G+  + +   + L      +  V +    +      +L Q + 
Sbjct: 26  RIAVDTET--------MGLKPHRD--RLCLVQICNPEGQVTVVRIAQGQMDAPNLKQLME 75

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
            +TV+ V H + F+       L I+       CT + ++          LK     L   
Sbjct: 76  SDTVLKVFHFARFDIATLLHHLDIETMP--IFCTKIASKLVRTYSPRHGLKELVREL--- 130

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                   G+ L         D         N     +    Y   DV         L+ 
Sbjct: 131 -------VGEEL---------DKSAQSSDWGNAENLSEEQLNYASNDVRYLLSAQATLVK 174

Query: 180 LSDGERDLWLLDQTINDRGYRI 201
           + + E  L L           +
Sbjct: 175 MLEREERLELAMACFQCLPTIV 196


>gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1]
 gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1]
          Length = 211

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 61/205 (29%), Gaps = 34/205 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D ET        +G+    +   + L      +  V +            L Q L 
Sbjct: 27  QLAVDTET--------MGLNIPRD--RLCLVQVCDPEGQVAVVKIGRGQKEAPHLQQLLE 76

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
              +  + H + F+    +  LGI +      CT + +   RT      LK+    L+  
Sbjct: 77  HPRITKIFHYARFDLATLRYHLGIRVHP--VFCTKIASKIARTYSPRHGLKDL--VLDL- 131

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                               ID         N     +    Y   DV     L ++L  
Sbjct: 132 ----------------LGVEIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTA 175

Query: 180 LSDGERDLWLLDQTINDRGYRIDLD 204
           +   E    L+   ++     +DLD
Sbjct: 176 MLKREERFELVQTALSCLPAIVDLD 200


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +         P  L   L D
Sbjct: 25  IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPSDPAPERLKAVLAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H + F+  +     G  +      CT + ++          LK+    L    
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
               +    +   +       +               L     + D    RE
Sbjct: 129 ----VGVDLSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLARE 176


>gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+  D  +  ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC   ++G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193


>gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+  D  +  ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC   ++G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193


>gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 57/484 (11%), Positives = 103/484 (21%), Gaps = 144/484 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     I      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                     +  VHDEI           V  +  +  +   W          L  EG  
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKM 696

Query: 670 AKRY 673
              +
Sbjct: 697 GPNW 700


>gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin]
 gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin]
          Length = 704

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 97/484 (20%), Gaps = 144/484 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277
               + ++ +      +   L     +        +      +L H  +         +L
Sbjct: 326 YTPVEHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385

Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   +  DGR+ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386
                                      +  R+   A         +    V  D +G+E 
Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R L         +  +  GE +                    R   K       Y  G  
Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQMAAGLPTRDNAKTFIYGFLYGAG-- 533

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                       +            + +
Sbjct: 534 ------------------------------------------AAKIGQIVGGTSEDGKRL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            K +  +   +              ++E  + +  + +       +   +   +     R
Sbjct: 552 IKNFLEQTPAI------------AALREAITGALVKDSKWVGGEQKVTWKRRWVRGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + GY
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGY 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                    ++  +HDE               +  +  +   W          L  EG  
Sbjct: 639 KHGWDGDFCLMGWIHDEQQLACRTEEI--AKVVIEVSQQAMRWVGDHFNFRCQLDTEGKM 696

Query: 670 AKRY 673
              +
Sbjct: 697 GPNW 700


>gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+  D  +  ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYL--FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKDAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC   ++G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 48/173 (27%), Gaps = 25/173 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +    +    P  L + L D
Sbjct: 23  VAIDTETLGLNP----------HRDRLCVVQLSTGDGTADVVQIPQAGPEPVVLKRVLAD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL-NFS 119
             ++ + H + F+  +  + LG  +      CT + ++          LK+    L    
Sbjct: 73  PGILKIFHFARFDVAVLYRALG--VMPSPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 130

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                     +   +      ++               L     + D    RE
Sbjct: 131 L---------SKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLARE 174


>gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G   D  +  ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGSAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC   ++G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 62/213 (29%), Gaps = 36/213 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P+             + L   +  D    L     +   P  L   L D
Sbjct: 20  IAIDTETMGLNPMRD----------RLCLVQLSSGDGDAHLVHFQGRYEAP-RLKALLAD 68

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
              + + H + F+  +  + LG+        CT + +R    N     LK+ C       
Sbjct: 69  HNRLKLFHYARFDIAMLARWLGVTC--TPVYCTKIASRLTRTNTDKHGLKDLCR------ 120

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L  +       S      +            Y   DV     L  +L  L
Sbjct: 121 ----DLLGIDLSKQQQTSDWGSGDLTAEQQA----------YAASDVLHLHALKAKLDAL 166

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              E    L D   +    R  LDL+   +E I
Sbjct: 167 LKREGRGALADSCYSFLPTRAALDLLGWGEEDI 199


>gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGSSLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+  D  +  ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC   ++G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYIDDPE 193


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +         P  L+  L D
Sbjct: 25  IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPGDPAPERLMAVLAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H + F+  +     G  +      CT + ++          LK+    L
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL 128


>gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                       RSC     G  LV  D +G+E R+LA    +
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDD 195


>gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 72/231 (31%), Gaps = 50/231 (21%)

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSRQ 237
             G+++D +   KL   +  E   ++ ++  +                      I +   
Sbjct: 2   RNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGS 61

Query: 238 TYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
              +   L    G+     +E       + +L   ++ +     +   +      + +++
Sbjct: 62  RKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  +AV  DGR+ G +   GA  TGR +        +P                      
Sbjct: 118 SWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP---------------------- 154

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                      RSC     G +LV  D +G+E R+LA    ++       N
Sbjct: 155 -AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+  D  +  ++ E        ++  + ++                      + +  
Sbjct: 1   ERNGFAFDFPVACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L        D+    +  +       N       L+L  L  S   I  + +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             +AV  DGR+ G +   GA  TGR +        +P +                     
Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                     RSC   ++G KLV  D +G+E R+LA    +  
Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 37/211 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P           +  + +   +  D    +           +L + L D
Sbjct: 22  VAVDTETLGLNP----------HRDRLCVVQLSPGDGTADVVQIARGQRAAPNLARLLTD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
              M + H + F+  + +  LGI++      CT + ++          LK+    L    
Sbjct: 72  PAKMKIFHFARFDLAVLRHNLGIEVAP--VWCTKIASKLVRTYTDRHGLKDITREL---- 125

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T  +   A      Y   DV     L ++L  +
Sbjct: 126 ----------LGVDLSKQQQSSDWAAETLTDAQLA------YAASDVLHLHALREKLAAM 169

Query: 181 SDGERDLWLLDQTINDRGYR--IDLDLVLKL 209
            + E    L          R  +DL    + 
Sbjct: 170 LEREERTALARACYEFLPTRAALDLMGWEEQ 200


>gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120]
 gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120]
          Length = 209

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 57/207 (27%), Gaps = 34/207 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L      +  V      +      +L + L  
Sbjct: 27  IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIAQGQTAAPNLKKLLEA 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ V H + F+       L I +      CT + ++          LK+    L    
Sbjct: 77  TNVLKVFHFARFDVATLLHHLDIHVQP--IFCTKIASKLARTYTNRHGLKDLVHEL---- 130

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                           +  +D         N     +    Y   DV       ++L+ +
Sbjct: 131 ---------------EQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207
              E    L  Q        + LDL+ 
Sbjct: 176 LKREERWELAQQCFQVLPTIVSLDLLQ 202


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +  +   +L + L D
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
             ++ + H + F+       LG  +  +   CT + +R          LK+    L    
Sbjct: 70  PNILKIFHFARFDLAALSNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T ++   A      Y   DV     L  +L  +
Sbjct: 124 ----------LNVDLSKQQQSSDWGADTLSDAQLA------YAASDVLHLHALRDKLDAM 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
              E    L         +R
Sbjct: 168 LARENRTELAQACFGFLPHR 187


>gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 35/199 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ID ET        +G+  + +   + +   +  D    +           +L++ L+D 
Sbjct: 23  AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDP 72

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121
            ++ + H + F+        G  +  +   CT + +R          LK+    L     
Sbjct: 73  AIVKIFHFARFDLAALYNAFG--VMPRPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L     K    S     T ++   A      Y   DV     L  +L    
Sbjct: 126 ---------LSIDLSKQQQSSDWGSPTLSDAQLA------YAASDVLHLHALRDKLEATL 170

Query: 182 DGERDLWLLDQTINDRGYR 200
             E    L          R
Sbjct: 171 AREDRSALAQACFEFLPSR 189


>gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVRDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G +LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDGGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 209

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 54/207 (26%), Gaps = 34/207 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L      +  V             +L + L  
Sbjct: 27  IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEA 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ V H + F+    +  L I +      CT + ++          LK+    L    
Sbjct: 77  TNVLKVFHFARFDVATLRHHLDIHVQP--IFCTKIASKLARTYTNRHGLKDLVYEL---- 130

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      +                  +          Y   DV       ++L+ +
Sbjct: 131 ---------EQVELDKSAQSSDWGNAANLTDAQL------SYAANDVRYLLSAQQKLVAM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207
              E    L  Q        + LDL+ 
Sbjct: 176 LKREERWELAQQCFQVLPTIVSLDLLQ 202


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 112/449 (24%), Gaps = 114/449 (25%)

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             SL+     L                 RF      +   D +            +YC +
Sbjct: 32  RHSLEAWGYRL----------------KRFKGDFAKNDSNDWSTYT-----PEMLDYCIQ 70

Query: 166 DVEATRELFKRLI-------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
           D + T  L++ L             E D+ +L       G+R D+D  ++++  +  E  
Sbjct: 71  DTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDAAVRVRATLQDEFD 130

Query: 219 KLDEDIVK--------------------------LTDGIIRSSRQTYALRMYLFLITGID 252
            + + I                            +T     +      +   L    G  
Sbjct: 131 SITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQNIAWALQTFRGAR 190

Query: 253 L--------VDMSEGTLKSIL--------SHSNITQLAKDLILNRLASSGSAILKLNTLS 296
                      + E TL  +            +        +L      G      N+  
Sbjct: 191 FTKVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKWLGQLSEGTNSWF 250

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            ++  DG +  +     +++TGR +        +                          
Sbjct: 251 NSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV-------------------------- 282

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
             +++   R   +   G  +V ADL G+E R+L         + AF  G    V      
Sbjct: 283 --VSAPWARELFVPHPGHVMVGADLEGLELRLLGHY------LAAFDQGSFAEVVVNGDI 334

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW- 475
                D+V    R   K +  A  Y  G             +L    +          + 
Sbjct: 335 HQQNADRV-GCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSDAQKKTLGGELRRKFL 390

Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGT 501
                 E     ++ +         L G 
Sbjct: 391 DAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419


>gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 45/230 (19%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ ++                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L    G      +E     +       I      LI   L      +  +++
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + V               + TGR +        +P                       
Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                     RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHHMQDPEWQEELLN 205


>gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+    KL   +  E   ++ ++  +                      + +  
Sbjct: 1   ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLARYMDDEDYTNEILN 204


>gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927]
 gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei]
 gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            brucei]
          Length = 1629

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 94/392 (23%), Gaps = 83/392 (21%)

Query: 270  ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                  + IL   A                 +   V  D         +  + TGR +  
Sbjct: 1254 HGDKTAETILELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASA 1313

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381
                QN+P++++S                           +R   ++  G+K   + AD 
Sbjct: 1314 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 1347

Query: 382  AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + +E   LA +A +   ++   +  D +    A       D    E     K        
Sbjct: 1348 SQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMR---PDLQYTEILKKAK-------- 1396

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                               +  S            +    L   
Sbjct: 1397 ---------------------KDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQD 1435

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                + +  R  ++GV      +    +    +    +  R     ++            
Sbjct: 1436 QVRHLIEKERETYRGVDVFNSMV--ALSANKFDASLQNGSRNVRGHQIFKGMFPVI---- 1489

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------- 614
              +  R ++++       L   +  +         L    VQ  + +I+   +       
Sbjct: 1490 --TGSRYIFTESDVPEGLLRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHF 1547

Query: 615  KNATKNG--YDIVLTVHDEIVSETPDTPYFSV 644
                  G    ++ TVHD +  +        V
Sbjct: 1548 LRKDNYGGLAVLINTVHDCVWIDCHMDVLQDV 1579



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 83/328 (25%), Gaps = 72/328 (21%)

Query: 2   SKLFIDIETRSP-------QPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y  Q  +         A  +DD  V
Sbjct: 521 RYLVVDLETTTVRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLHV 580

Query: 43  K-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICT 96
                  + S+  S  L  L D  V+ V HN  F+         +++        +   T
Sbjct: 581 TSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWDT 637

Query: 97  SVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                         G  + L+    +                          S      +
Sbjct: 638 MYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPK-----------LDAVKQAWSSG----K 682

Query: 150 ANHVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                 ++   +Y   D+E           R L +R + +     D  L    +   G +
Sbjct: 683 DTCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLK 742

Query: 201 IDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGIDL 253
            ++ L L     +  + K+L   +       + +      +      L  + F       
Sbjct: 743 TNVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF------G 796

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNR 281
             +   T              +  +  R
Sbjct: 797 GKLKLSTNARESRLLPGEVFERHTLYAR 824


>gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1629

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 94/392 (23%), Gaps = 83/392 (21%)

Query: 270  ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                  + IL   A                 +   V  D         +  + TGR +  
Sbjct: 1254 HGDKTAETILELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASA 1313

Query: 324  VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381
                QN+P++++S                           +R   ++  G+K   + AD 
Sbjct: 1314 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 1347

Query: 382  AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441
            + +E   LA +A +   ++   +  D +    A       D    E     K        
Sbjct: 1348 SQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMR---PDLQYTEILKKAK-------- 1396

Query: 442  QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
                                               +  S            +    L   
Sbjct: 1397 ---------------------KDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQD 1435

Query: 502  ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                + +  R  ++GV      +    +    +    +  R     ++            
Sbjct: 1436 QVRHLIEKERETYRGVDVFNSMV--ALSANKFDASLQNGSRNVRGHQIFKGMFPVI---- 1489

Query: 562  LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------- 614
              +  R ++++       L   +  +         L    VQ  + +I+   +       
Sbjct: 1490 --TGSRYIFTESDVPEGLLRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHF 1547

Query: 615  KNATKNG--YDIVLTVHDEIVSETPDTPYFSV 644
                  G    ++ TVHD +  +        V
Sbjct: 1548 LRKDNYGGLAVLINTVHDCVWIDCHMDVLQDV 1579



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 83/328 (25%), Gaps = 72/328 (21%)

Query: 2   SKLFIDIETRSP-------QPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y  Q  +         A  +DD  V
Sbjct: 521 RYLVVDLETTTVRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLHV 580

Query: 43  K-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICT 96
                  + S+  S  L  L D  V+ V HN  F+         +++        +   T
Sbjct: 581 TSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWDT 637

Query: 97  SVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                         G  + L+    +                          S      +
Sbjct: 638 MYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPK-----------LDAVKQAWSSG----K 682

Query: 150 ANHVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                 ++   +Y   D+E           R L +R + +     D  L    +   G +
Sbjct: 683 DTCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLK 742

Query: 201 IDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGIDL 253
            ++ L L     +  + K+L   +       + +      +      L  + F       
Sbjct: 743 TNVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF------G 796

Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNR 281
             +   T              +  +  R
Sbjct: 797 GKLKLSTNARESRLLPGEVFERHTLYAR 824


>gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +    A  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNSA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G +LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2]
 gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2]
          Length = 706

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 92/749 (12%), Positives = 174/749 (23%), Gaps = 137/749 (18%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69
              L   G+     Q     CA  +D    +              +  L DE     + V
Sbjct: 3   LSDLEANGLLHSVSQFH---CAVTYDYTTDQYIRYRPADF--GAYIDALEDEVARGGLIV 57

Query: 70  AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105
            HN   ++  +     KK LG  ++ P +  + T VL+R                     
Sbjct: 58  FHNGHKYDIPVIELLAKKLLGRDVEFPKENVLDTLVLSRLVYSNIKDTDAGLLRAGKLPG 117

Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW----Q 157
                 +L+     L   +   K                 S             W    +
Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD------------DFKASLVESGEDYVDGLEWLMFNE 165

Query: 158 LFGEYCKRDVEATRELFKRL------IPLSDG-------------------ERDLWLLDQ 192
              EY  +DV  T+ LF++L       P  +                    E D   L  
Sbjct: 166 DMMEYNVQDVVVTKALFEKLCSNTFYFPEVEPNGSTEAERFWKGSIEAVKLEHDAAWLLA 225

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            +   G+ ID+  +  L   +A  R +L  ++        +      A R      TG  
Sbjct: 226 KMERNGFPIDVKSLENLYAELAGRRGELLVELTNTFGSWYQVKGGVEAFR---HPRTGKP 282

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
           L                                     K     E    D R       Y
Sbjct: 283 LTK----------------YPRVKYPKQGGIFKKPKNKKQREGLEPCELDNRDYVEGAPY 326

Query: 313 GASRTGRW--SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
                  +  S      + L +        T +       E +        D  R     
Sbjct: 327 TPVEHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQR----- 381

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                 ++ +   I+ RV     G++  ++       I+ +           + +     
Sbjct: 382 ---CIELIKEYLMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNP--NGAVTGRATHSFPN 436

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD--- 487
           + +V  +   Y    +       +           V   ++  +            +   
Sbjct: 437 VAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYRYDEGEY 496

Query: 488 -QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN- 545
            +             A  L  +       G+              +  G S   +R+   
Sbjct: 497 VETILTGDIHTKNQMAAGLPTRDNAKTFNGIYGFLYGAGAAKIGQIVGGTSEDGKRLIKN 556

Query: 546 ----VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                P +   R      +V  S        V     ++     + +  R+        +
Sbjct: 557 FLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS-PHAALNTL 615

Query: 602 VQAISRDILCEGMKN----ATKNGYD--------IVLTVHDEIVSETPDTPYFSVGTLCS 649
           +Q+    I    +        + GY         ++  +HDE               +  
Sbjct: 616 LQSAGALICKLWIVKTEEMLLEMGYKHGWDGDFCLMGWIHDEQQLACRTEEI--AKVVIE 673

Query: 650 LMTKNPSWAKG-----LPLKAEGYEAKRY 673
           +  +   W          L  EG     +
Sbjct: 674 VSQQAMRWVGDHFNFRCQLDTEGKMGPNW 702


>gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 45/230 (19%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ ++                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L    G      +E     +       I      LI   L      +  +++
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + V               + TGR +        +P                       
Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                     RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205


>gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14]
 gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14]
          Length = 704

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/485 (9%), Positives = 97/485 (20%), Gaps = 144/485 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277
               + ++ +      +   L     +        +      +L H  +         +L
Sbjct: 326 YTPVEHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385

Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   +  DGR+ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386
                                      +  R+   A         +    V  D +G+E 
Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R L         +  +  GE +                    R   K       Y  G  
Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQMAAGLPTRDNAKTFIYGFLYGAG-- 533

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                       +            + +
Sbjct: 534 ------------------------------------------AAKIGQIVGGTAEDGKRL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            K +  +   +              ++E  + +  + +       +   +   +     R
Sbjct: 552 IKNFLEQTPAI------------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVETERLLLEAGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                     +  VHDEI  +           +  L  +              L  EG  
Sbjct: 639 KHGWDGDFAYMAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696

Query: 670 AKRYR 674
              ++
Sbjct: 697 GANWK 701



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 82/300 (27%), Gaps = 74/300 (24%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69
              +   G+     Q     CA  +D    +              +  L  E     + V
Sbjct: 3   LSDIETNGLLHNVSQFH---CAVTYDYTTDQYIRYRPDDF--GAYIDALEAEVARGGLIV 57

Query: 70  AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105
            HN   ++  +     KK LG  +  P +  + T V++R                     
Sbjct: 58  FHNGHKYDIPVIELLAKKLLGRDVKFPKENVLDTLVMSRLIYSNIKDTDAGLLRAGKLPG 117

Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFG 160
                 +L+     L   +   K            K S+     +         + +   
Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD---------DFKASLAESGEEYVDGMEWLLFNEDMM 168

Query: 161 EYCKRDVEATRELFKRL-------------------------IPLSDGERDLWLLDQTIN 195
           EY  +DV  T+ LF++L                         +     E D   L   + 
Sbjct: 169 EYNVQDVVVTKALFEKLCSNTFYFPNETPAGSTEAERFWNGSLEAVKLEHDAAWLLAKME 228

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G+ ID+  +  L   +A  R +L  ++        ++     A R      TG  L  
Sbjct: 229 RNGFPIDIKSLENLYAELAGRRGELLVELTNTFGTWYQAKGGVEAFR---HPRTGKPLTK 285


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L  ++  +        T Q  +  +L   L D
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHFVHFTNQDYIAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT + ++          L + C  L    
Sbjct: 70  KTRCKIFHFARFDLAFIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLNDLCRELLNIN 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                        +      D+   +              EY  +DV    +L   L  +
Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E    L          R +LDL+
Sbjct: 168 LLKENRYELAQDIFRFLPTRANLDLL 193


>gi|229073437|ref|ZP_04206573.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
 gi|228709744|gb|EEL61782.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
          Length = 464

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 94/391 (24%), Gaps = 85/391 (21%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------S 51
           FID ++    P              I      + D                         
Sbjct: 88  FIDTKSTGSNPFKDS----------IISITIGFMDNSFFYIPIKPFKHRLSQNTSTLSLE 137

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109
                L   L  +  + +  NS             DI    +  T + A          +
Sbjct: 138 YTMKKLSPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHPKGV 196

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K                  K  I                          F  Y    +++
Sbjct: 197 KEWYKEYVLPR-----LISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKS 251

Query: 170 TRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQE 216
             E  KR+                + E  L  +  T   +G +I  + +   +++++  +
Sbjct: 252 VFEYQKRIFENPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQAK 311

Query: 217 RKKLDEDIVKLT-------------------------DGIIRSSRQTYALRMYLF----- 246
            + + ++I+                               + +      L   L+     
Sbjct: 312 LQSVKKEILNHLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAI 371

Query: 247 -------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
                        L+   +   K+++ + ++  +   ++  R      +    N+L +  
Sbjct: 372 LKPIMEYDKGCKSLISKLKTDRKTLIRNLSMHPVIPLILEYRRLVKLISS-FCNSLPKEQ 430

Query: 300 --SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
             + D ++       G ++TGR S      +
Sbjct: 431 QGTIDNKIHPIYNSVG-TKTGRMSCSSPNLK 460


>gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a]
 gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a]
          Length = 704

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698

Query: 672 RY 673
            +
Sbjct: 699 NW 700


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 122/461 (26%), Gaps = 96/461 (20%)

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T V++R      ++ +            ++    +L A   +       +    +N   
Sbjct: 1   DTLVMSRL--YYPNISDRDYERRPEGMPQRLYGRHSLEAWGYRLKCFKGDFAKNDSNDWS 58

Query: 155 AWQ-LFGEYCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRGYRIDLDLV 206
            +     +YC +D + T  L++ L             E D+ +L       G+R D+D  
Sbjct: 59  TYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDAA 118

Query: 207 LKLQELIAQERKKLDEDIVK--------------------------LTDGIIRSSRQTYA 240
           ++++  +  E   +   I +                          +T     +      
Sbjct: 119 VRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQN 178

Query: 241 LRMYLFLITGIDL--------VDMSEGTLKSIL--------SHSNITQLAKDLILNRLAS 284
           +   L    G             + E TL  +            +        +L     
Sbjct: 179 IAWALQTFRGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKW 238

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            G      N+   ++  DG +  +     +++TGR +        +              
Sbjct: 239 LGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV-------------- 282

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                         +++   R   +   G  +V ADL G+E R+L         + AF +
Sbjct: 283 --------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHY------LAAFDS 322

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G    V           D+V    R   K +  A  Y  G             +L    +
Sbjct: 323 GSFAEVVVNGDIHQQNADRV-GCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSDAQK 378

Query: 465 NVKSTSTFEDW----EQAESHHLWMQDQYPEFAVKDKLIGT 501
                     +       E     ++ +         L G 
Sbjct: 379 KTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419


>gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 47/231 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ ++                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +                ++IL   ++ +    LI   L      +  ++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPE--AQLIAEYLMIQKR-VGLID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  + V               + TGR +        +P                      
Sbjct: 118 SWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                      RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 -SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205


>gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 47/231 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ ++                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +                ++IL   ++ +    LI   L      +  ++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPE--AQLIAEYLMIQKR-VGLID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  + V               + TGR +        +P                      
Sbjct: 118 SWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                      RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 -SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 36/204 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E         +G+ A  +   +TL   +  D    L   T     P +L   L D
Sbjct: 21  IAVDTE--------AMGLNAMRDN--LTLVQVSSGDGTAHLVQLTRDYDCP-NLKALLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H + F+ ++ K+ +GI        CT + +R          LK+         
Sbjct: 70  PKVLKIFHFARFDVVMMKRWMGITCAP--IWCTKIASRLARTYTDRHGLKDVAR------ 121

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  +     K    S        +         +Y   DV    ++   L  +
Sbjct: 122 ----EVAGVDM----SKAQQSSDWGQDKLTDAQI------QYAASDVLYLHQIKAGLEAM 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
            + E  L L     +    R DLD
Sbjct: 168 LEREGRLELAQACFDFLPIRADLD 191


>gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 56/230 (24%), Gaps = 45/230 (19%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ +                         +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L    G      +E     +       I      LI   L      +  +++
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + V               + TGR +        +P                       
Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                     RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205


>gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1578

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 99/404 (24%), Gaps = 86/404 (21%)

Query: 267  HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320
             SN       +IL   A                 +   V S          +  + TGR 
Sbjct: 1200 KSNHDDKTASIILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1259

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378
            +      QN+P++++S                           +R   I+  G K   + 
Sbjct: 1260 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1293

Query: 379  ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            AD + +E   LA +A ++  ++      D +            D    +     K     
Sbjct: 1294 ADYSQLEVVALAVLASDEQMLEDLRQNVDFHCKRVTMMR---PDLKYTDVLQRAK----- 1345

Query: 439  LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                  +  S            +    L
Sbjct: 1346 ------------------------KNKELEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1381

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  ++ +     ++GV    K +            +     V NV      +    +
Sbjct: 1382 TQDQVRMLIEKENETYRGVEVFNKMVALSA----NSYDASLQNGVRNVRGHQFFKG---M 1434

Query: 559  HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
              VL +  R V+++       L    +           L    VQ  + +I+ + M    
Sbjct: 1435 FPVL-TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1492

Query: 618  ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                           +  TVHD +  +   + Y  V      +M
Sbjct: 1493 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1536



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 80/294 (27%), Gaps = 68/294 (23%)

Query: 2   SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y     +         A  +DD  V
Sbjct: 466 RYLILDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFLPRRYFDRSVALRYDDPSV 525

Query: 43  ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95
                L +++ + ++    L  L +  V+ V HN  F+ +   +            +   
Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRRFLRRGGKIWD 581

Query: 96  TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           T              G  + L++   +                +         S      
Sbjct: 582 TMYAEYLLTGHEVKLGHGAGLEDVAKSYGGQT-----------MKLDAVKQAWSEG---- 626

Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199
           +  +   +    EY   D+E T  +F K +    +           +  L    +   G 
Sbjct: 627 KETYEIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLF 246
           + +LDL  +    +  +  +L   + +              +      L  + F
Sbjct: 687 KTNLDLAQRQSNELTTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF 740


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 54/203 (26%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  Y +   + +   +  D    +    +      +L++ L D
Sbjct: 22  IAVDTET--------LGLQPYRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + +  + H   F+  +   T GI        CT + ++                      
Sbjct: 72  KAITKIFHFGRFDLAILAHTFGI--MPDVVFCTKIASKL-----------------TRTY 112

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        +   EY   DV     L          
Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKR 172

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           E    +          R  LDL+
Sbjct: 173 EERENVAKACFQFLPMRAKLDLL 195


>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
 gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 47/197 (23%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + L   +  D    +           +L+  LR+
Sbjct: 22  VAIDTETLGLNP----------HRDRLCLVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            +V  + H   F+  +     G  +  +   CT + +R                      
Sbjct: 72  RSVTKLFHFGRFDLAVLYNAFG--VMPEPVFCTKIASRL-----------------TRTY 112

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I     G   S     +            EY   DV     L   L      
Sbjct: 113 TDRHGLKDICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAR 172

Query: 184 ERDLWLLDQTINDRGYR 200
           E      D        R
Sbjct: 173 EGRTKEADACFRFLPTR 189


>gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +  E   ++ ++ ++                      + +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+    M+E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++   AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       R C     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
 gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
          Length = 552

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/486 (14%), Positives = 118/486 (24%), Gaps = 141/486 (29%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224
            RL  L   E    L+   +   G     D+  +L   +              + L +++
Sbjct: 143 HRLALLLAAESSGALVAAEMTHAGLPWRADVHARLLTELLGPRPASGARPAVLEALAQEV 202

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                    +     AL   L    G+ + D    TL+ +             +L     
Sbjct: 203 RAALRAPGLNPDSPGALLAAL-QAAGLPVEDTRSWTLEQL------DHPVVGPLLEYKRL 255

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
           +           +    DGR R +    G   TGRW+       ++P             
Sbjct: 256 ARLLTANGWAWLDTWVRDGRFR-SWFVPGGVVTGRWASNGGGALSVP------------- 301

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              VR   +A +G +LVVAD+A +E RVLA ++G         +
Sbjct: 302 -----------------TQVRPAAVADDGWRLVVADVAQLEPRVLAGMSG---------D 335

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
                    A  +   +   + E RA  KV  L   Y                   +   
Sbjct: 336 DAMAEAARAADLYEGMVAAGTVETRAQAKVAILGAMYGAT----------------RGES 379

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     + +A               V   L+G        AW              
Sbjct: 380 GRIMPRLARRYPRAIGLVEQAARAGERGDVVHTLLGRGSPRPTGAW-------------- 425

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                  V  G                           P  R                  
Sbjct: 426 ---AERAVALGEPAEVSGS-------------------PEERDRA--------------- 448

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------------IVLTVHDEI 632
                 R +G      +VQ    +     + +     +             +V  +HDE+
Sbjct: 449 -----RRAWGRFTRNFVVQGTGAEWALCWLADLRNRLWRLGGTGPLEQRPHLVFFLHDEV 503

Query: 633 VSETPD 638
           V  TP+
Sbjct: 504 VVHTPE 509


>gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 47/231 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ ++                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60

Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L  +                ++IL   ++ +    LI   L      +  ++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPE--AQLIAEYLMIQKR-VGLID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +  + V               + TGR +        +P                      
Sbjct: 118 SWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP---------------------- 155

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                      RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 -SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205


>gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
           cruzi]
          Length = 274

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/318 (10%), Positives = 82/318 (25%), Gaps = 71/318 (22%)

Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435
           ++ AD + +E  VLA ++ +   ++   +  D +    +     P +             
Sbjct: 1   MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------ 48

Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495
                                +  +   +            +  S            A  
Sbjct: 49  ---------------------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATT 87

Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR-- 553
             L     E +  A    ++ + + ++ + +           +     A     + R   
Sbjct: 88  TGLTEHEVERLISAEEQHYKDLSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMIL 147

Query: 554 -HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
             +   + V+P+  +  ++  K                     +L    VQ ++ +I+  
Sbjct: 148 LTEPLHYFVVPTGSKFDFAKDKKSI-----------------PRLKNYPVQGLAGEIVQI 190

Query: 613 GMKNA---------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN-------- 654
                               +V TVHD +  +   +    V   +  +M+          
Sbjct: 191 MCGKIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLW 250

Query: 655 PSWAKGLPLKAEGYEAKR 672
           P     +P  A+ +    
Sbjct: 251 PDVKLDVPFNADVHIGPS 268


>gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
 gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
          Length = 568

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 103/395 (26%), Gaps = 71/395 (17%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +E   +   + +       +      +        G+ L  +    L+       I   A
Sbjct: 217 REMVAMAARLAEALGIRALNPDSAAQVTKAFSDA-GVKLPSLRRWELE------GIDHPA 269

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L     S           +    DGR R      G   TGRW+        + R+ 
Sbjct: 270 IPLLLKYKELSRLYSFNGWVWRDTWVVDGRFRPEYS-VGGVVTGRWAARGGGALQIARR- 327

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  +IA  G   V AD A +E R+LA +A 
Sbjct: 328 -----------------------------LRKAVIADPGWLFVSADAAQLEPRILAAMAQ 358

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +A  +        Y+                  K+  L   Y           + 
Sbjct: 359 DPGMAEATQSD-----DMYSALAGVFEGSRD-----QAKLGLLGAMYGQTGGGAAAPLAL 408

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                               + +A +       +     +    +G  C    + W++  
Sbjct: 409 M----------------RRRFPKATALLDDAAREGERGRLVRSQLGRTCPPPSQRWQSAI 452

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
            G  +                G ++  R       V++    +   VL +  R     + 
Sbjct: 453 AGDAEADAADDSNRRS-----GQVARARGRFTRNFVIQATAAEWAEVLLALLRQQLRTLD 507

Query: 575 GDCSYLNTATSQLMRE-RTYGGKLTENIVQ-AISR 607
           G           L+   R +   +TE I+Q A + 
Sbjct: 508 GPQLVFFQHDEVLVHAPREHAAAVTEMIIQCATAA 542



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 45/212 (21%), Gaps = 40/212 (18%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              MA   G+                                          G       
Sbjct: 353 LAAMAQDPGM----AEATQSDDMY-SALAGVFEGSRDQAKLGL-LGAMYGQTGGGAAAPL 406

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              R +      L  D     A   + G  + ++     P               PS R 
Sbjct: 407 ALMRRRFPKATALLDD----AAREGERGRLVRSQLGRTCPP--------------PSQRW 448

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKN------ 620
                   +    + +  +  +     G+ T   ++QA + +                  
Sbjct: 449 QSAIAGDAEADAADDSNRRSGQVARARGRFTRNFVIQATAAEWA-----EVLLALLRQQL 503

Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC 648
               G  +V   HDE++   P     +V  + 
Sbjct: 504 RTLDGPQLVFFQHDEVLVHAPREHAAAVTEMI 535


>gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                        +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+   + +E       +  L+  ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVKFTNKTEKGNIIVDEKALNSIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G KLV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNKLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 34/207 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L      +  V +    +      +L +    
Sbjct: 27  IAVDTETMGLLP----------QRDRLCLVQLCNLEGKVTVIRIAKGQTEAPNLKKLFEA 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ V H + F+    +  LGI +      CT + ++          LK+         
Sbjct: 77  ANVVKVFHFARFDIATLRANLGIQVSP--VFCTKIASKLARTYTNRHGLKDV-------- 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      +    K  +D         N V   +    Y   DV     + ++L  +
Sbjct: 127 -----------VQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207
              E    +  +        + LDL+ 
Sbjct: 176 LKREERWKIAQECFEFLPTIVSLDLLQ 202


>gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16]
 gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16]
          Length = 808

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/450 (9%), Positives = 102/450 (22%), Gaps = 85/450 (18%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293
             +    +  L L  G  +   S   LK++       + AK L+        ++   +  
Sbjct: 380 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 437

Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                        + + V  DG +  +L    A+ T R S      Q LP ++  +    
Sbjct: 438 TYNKDGSIKDTKGMLQYVDEDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 493

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                             A   V+   ++       L   D   +E  +LA ++ +   +
Sbjct: 494 -----------------EAGSRVKEMFVSRFGPDGMLGETDYTALEVVMLAALSKDRNLL 536

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                          +      +    +                             +  
Sbjct: 537 ---EKLMAGTDMHLYRLAGKHNNWNGFD-----------------------YDQLVAIKK 570

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
               +            + ++            A          +       A     + 
Sbjct: 571 DPNHEWHGRVMQARKKIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 630

Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
             + + +              +  A     +        +      RR  +    G C  
Sbjct: 631 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGSDGNWRQY------RRGYWQAPGGTCYS 684

Query: 580 LNTATSQLMRERTYGGKLTENIV-----QAISRDILCEGMKNA-----TKNGY----DIV 625
                     +R       +  +     Q  +  ++   +         + G+     ++
Sbjct: 685 FRQQERWDKEQRKTVMDFKDTQIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLI 744

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
             VHD + ++        V   +  +M   
Sbjct: 745 NNVHDAVYTDCHKDTAAEVNKGVRDIMADA 774



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 74/271 (27%), Gaps = 36/271 (13%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58
           M+ +  +D+ET S           +  +  I + A+  D       D      +      
Sbjct: 1   MTTIRILDLETES-YEHKGRKASPFDHRNYIVMAAWRDD------VDGKVGQKVEHRFRN 53

Query: 59  -QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN 103
                D            + VAHN++FE   F      + L       R  CT       
Sbjct: 54  RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113

Query: 104 G----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                L  +L         +  +  ++          +   D      +           
Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVDGIKLLWDQGVLTSQMDQDLLSEYLSGPCGDIENTAL 173

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQELIAQ 215
             Y +      R ++   +   +           +   G ++DL++      K  E +A+
Sbjct: 174 VFYGQLMKLQARGMWAGYLERCEALLGF----SAMECAGLKVDLEVAKVNHAKQLEEVAE 229

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
              +L + + +            Y +  +L+
Sbjct: 230 IEAELQKLMPEFPPYFEFKYTSLYHMSAWLY 260


>gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM]
          Length = 404

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 103/414 (24%), Gaps = 121/414 (29%)

Query: 95  CTSVLART-----NGL---------------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
            T VL+R                          SL+     L       K E GK+L   
Sbjct: 1   DTLVLSRLFFTDLLDRDFRSRPANMPANLYGRHSLEAWGHRLGV----HKSEFGKSL--- 53

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-------PLSDGERDL 187
                           +        G YC++DV  + ++ +             D E  +
Sbjct: 54  --------------DGDWSTYTPEMGAYCQQDVVVSVKVAQLFESKLETHSDCIDTEHRI 99

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI----------------------- 224
             +       G+  D+D   +L+  +  E   + E++                       
Sbjct: 100 ADVMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFVDGGCFTPKRSNGPRGY 159

Query: 225 ---VKLTDGIIRSSRQTYALRMYLFL--ITGIDLVDMS---EGTLKSILSHSNITQLAK- 275
                +      S         + F            +        S+L      +  K 
Sbjct: 160 VEGAAMCKLKEFSPTSRDH-IAWAFETFRNWEPKERTASGRAKIDDSVLKEIGSPEALKF 218

Query: 276 -DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             ++  +      +  K   L + V+  G++  +      + TGR +         P   
Sbjct: 219 ARILELQKHLGQLSEGKNAWLQQEVN--GKIHHSCILN--TNTGRMAHLRPNLAQAPSAP 274

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                         R+       +  V AD +G+E R LA    
Sbjct: 275 EY----------------------------RALFHPGTNRLQVGADASGLELRCLAHY-- 304

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
                 A  +G     +      +T +  +    R  GK +   L Y GG    
Sbjct: 305 -----LAPFDGGKFAESVVHGDIHTDLAAIYGTDRKSGKGVTYCLIYGGGDTKL 353


>gi|159475852|ref|XP_001696028.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158275199|gb|EDP00977.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 498

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 71/269 (26%), Gaps = 74/269 (27%)

Query: 35  YAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           +A D   V   D T ++         + ++  ++     V  V HN  F+R + +  +GI
Sbjct: 205 FACDT-EVAFIDVTSETPVRLKPHHPILAEFKRFFEHAGVKKVWHNYGFDRHVLEN-MGI 262

Query: 87  DIPSKRWICTSVLARTNGLPSS------LKNA---------------------------C 113
                    T  +AR      S      L +                             
Sbjct: 263 AAAGFG-GDTLHMARLADASRSGKKTYGLDSLTSDRDVSGGVWDGGGGGTWLGSSPGAKA 321

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA--------NHVQAWQLFGEYCKR 165
            AL       K+     +  RF    +                  +H +    + +Y   
Sbjct: 322 EALVRDMVRAKL----GMKERFGMYRLRGDGPAKVPELPPIHRLHDHPRFRPTWIDYSAL 377

Query: 166 DVEATRELFKRLIPLSDGERD------------------LWLLDQTINDRGYRIDLDLVL 207
           D +AT +L + L      ER                   +  L   +  RG  ++ + + 
Sbjct: 378 DAKATWQLREALEAKLRAERVSSSSCTCGTSTAPIGWTLVRELLTEMERRGMMVNREHLR 437

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           + Q     E         +       ++ 
Sbjct: 438 QAQGGEGGEGGGGLGGEEEEIREDHHNTS 466


>gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
 gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
          Length = 704

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698

Query: 672 RY 673
            +
Sbjct: 699 NW 700


>gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +  E   ++ ++ ++                      + +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+    M+E       + +L    I +     +   +      + ++
Sbjct: 61  SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++   AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       R C     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1]
 gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1]
          Length = 704

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/485 (9%), Positives = 97/485 (20%), Gaps = 144/485 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277
               + ++ +      +   L     +        +      +L H  +         +L
Sbjct: 326 YTPVEHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385

Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   +  DGR+ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386
                                      +  R+   A         +    V  D +G+E 
Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R L         +  +  GE +                    R   K       Y  G  
Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQLAAGLPTRDNAKTFIYGFLYGAG-- 533

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                       +            + +
Sbjct: 534 ------------------------------------------AAKIGQIVGGTAEDGKRL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            K +  +   +              ++E  + +  + +       +   +   +     R
Sbjct: 552 IKNFLEQTPAI------------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVETERLLLEAGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669
                     +  VHDEI  +           +  L  +              L  EG  
Sbjct: 639 KHGWDGDFAYMAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696

Query: 670 AKRYR 674
              ++
Sbjct: 697 GANWK 701



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 82/300 (27%), Gaps = 74/300 (24%)

Query: 13  PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69
              +   G+     Q     CA  +D    +              +  L  E     + V
Sbjct: 3   LSDIETNGLLHNVSQFH---CAVTYDYTTDQYIRYRPDDF--GAYIDALEAEVARGGLIV 57

Query: 70  AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105
            HN   ++  +     KK LG  +  P +  + T V++R                     
Sbjct: 58  FHNGHKYDIPVIELLAKKLLGRDVKFPKENVLDTLVMSRLIYSNIKDTDAGLLRSGKLPG 117

Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFG 160
                 +L+     L   +   K            K S+     +         + +   
Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD---------DFKASLAESGEEYVDGMEWLLFNEDMM 168

Query: 161 EYCKRDVEATRELFKRL-------------------------IPLSDGERDLWLLDQTIN 195
           EY  +DV  T+ LF++L                         +     E D   L   + 
Sbjct: 169 EYNVQDVVVTKALFEKLCSNTFYFPNETPAGSTEADRFWNGSLEAVKLEHDAAWLLAKME 228

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255
             G+ ID+  +  L   +A  R +L  ++         +   T A R      TG  L  
Sbjct: 229 RNGFPIDIKSLENLYAELAGRRGELLVELTNTFGSWYSAKGGTEAFR---HPRTGKPLTK 285


>gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a]
 gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a]
          Length = 669

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/460 (13%), Positives = 102/460 (22%), Gaps = 132/460 (28%)

Query: 195 NDRGYRIDLDLVLKLQELI-------------AQERKKLDEDIVKLTDGIIRSSRQTYAL 241
              G  +D      L   +             A+ R+             +R+     A 
Sbjct: 280 ERDGLPVDRATAETLLADLVGPPPRTDADELAARRRRDAPVLAHLRGPVDLRNPAAVRAA 339

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                   G+D+ D   G L+ +    +       L+  R     +       L   V  
Sbjct: 340 LR----TVGVDVPDTRSGRLEPL---RDAHPAVAALLAWRRTERIATTYGHRWLDTHVGP 392

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           DGRLRG       +     +       NLP                              
Sbjct: 393 DGRLRGAWHGSDGAAGRMTA--QAGLHNLPAD---------------------------- 422

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
             +R  ++A  G+  V ADL  IE RVLA ++ +     A    +             P+
Sbjct: 423 --LRCAVVAEPGRVFVRADLGQIEPRVLAVVSADPALAAATQADD----------MYAPV 470

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                  RA  KV  LA  Y                                 +      
Sbjct: 471 AAQLGRDRAHAKVAMLAAMYGQTTGA----------------AGEALRRMRRAYP----- 509

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                  Y + A      G                +      L            +    
Sbjct: 510 ---TALAYLDAADAAGRSGR--------------DLRTYGGRLVRLAPAAGPPDRAAGPP 552

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
           R    P                          +   +          R           +
Sbjct: 553 RGLTDPA----------------------PPDEASPAVGGVTEQARGRFARNA------V 584

Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETP 637
           +Q  + ++               G +IVL +HDE++   P
Sbjct: 585 IQGPAAELFKAWAVTVRAELPALGGEIVLCLHDELLLHVP 624


>gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7]
 gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase
 gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7]
 gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7]
          Length = 704

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698

Query: 672 RY 673
            +
Sbjct: 699 NW 700


>gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D +   KL   +  E   ++ ++  +                      I +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L    G+     +E       + +L   ++ +     +   +      + ++
Sbjct: 61  SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
            +  +AV  DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 GSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                       RSC     G  LV  D +G+E R+LA    ++       N
Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 102/360 (28%), Gaps = 59/360 (16%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I +   G   +     ++   L    GI++    +     +L   +   + 
Sbjct: 202 KALVELAAKISEAFGGRPVNPDSPPSVVRAL-ARAGIEVPAARK----YLLKGIDHPAVG 256

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L     S           +   +DGR R      G   +GRW+        +P+  
Sbjct: 257 P--LLEYKELSRLFTANGWAWLDEWVADGRFRPHYV-VGGVVSGRWASRGGGALQIPK-- 311

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R+C+ A +G KLVVAD A +E RVL  ++G
Sbjct: 312 ----------------------------VLRTCVRADSGWKLVVADAAQLEPRVLTALSG 343

Query: 395 EDWKIKAFANGEDIYVTTYAKAFN---TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           +       A  +       A        P     ++ RA  K+  L+  Y G +      
Sbjct: 344 DRRLADVAAATDLYARLGEALFSGARWVPAADDDRDDRARAKIAMLSAMYGGTSG----- 398

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                                + +  A S+                 +G        AWR
Sbjct: 399 -----------EAGPLLGLLRQRFPDAVSYVEHAAQAGERGERVRSRLGRTSPAPSAAWR 447

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR-RHKRDVHIVLPSSRRLVY 570
           A   G+    +          +  G  +   V       M       +   LP+   LV+
Sbjct: 448 ALTGGLAS-DEAAELKARRASRGWGRFTRNFVVQASAADMTAVMLATLRTRLPAPAHLVF 506



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 38/147 (25%), Gaps = 23/147 (15%)

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
               +    R +    +       E  A   + G  + +R     P              
Sbjct: 399 EAGPLLGLLRQRFPDAVSY----VEHAAQAGERGERVRSRLGRTSPA------------- 441

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618
            PS+     +              +  R   +G      +VQA + D+    +       
Sbjct: 442 -PSAAWRALTGGLASDEAAELKARRASRG--WGRFTRNFVVQASAADMTAVMLATLRTRL 498

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +V   HDE++  TP      V 
Sbjct: 499 PAPAHLVFFQHDEVIVHTPAALAPEVS 525


>gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
           Nucleoside Triphosphate, And Its Processivity Factor
           Thioredoxin
 gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND
           DDATP
 gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template
 gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template And An Incoming Nucleotide
 gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Ddctp At The Insertion Site
 gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
           The Templating Strand
 gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Damp At The Elongation Site
 gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Dcmp At The Elongation Site
 gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
           Insertion Site.
 gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
           Acetylaminofluorene-Adducted Dna
 gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Ctp As The Incoming
           Nucleotide.
 gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Atp As The Incoming
           Nucleotide
          Length = 698

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 320 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 379

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 380 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 435

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 436 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 475

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 476 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 529

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 530 KI--------------------------------------------GQIVGAGKERGKEL 545

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 546 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 593

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 594 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 632

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 633 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 692

Query: 672 RY 673
            +
Sbjct: 693 NW 694


>gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/482 (11%), Positives = 97/482 (20%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------SVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +  L + + +            +            +   +   I     R
Sbjct: 552 KKKFLKNTPAIAALRESIQQ------------TLVESFQWVAGEQQVKWKRRWIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KIHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGL 698

Query: 672 RY 673
            +
Sbjct: 699 NW 700


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 37/210 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +  +   +L + L D
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
            TV+ + H + F+        G  +  +   CT + +R          LK+    L    
Sbjct: 70  PTVVKIFHFARFDLAALYNAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T ++   A      Y   DV     L ++L  +
Sbjct: 124 ----------LNVDLSKQQQSSDWGAETLSDAQLA------YAASDVLHLHGLREKLDAM 167

Query: 181 SDGERD--LWLLDQTINDRGYRIDLDLVLK 208
              E    L            R+DLD   +
Sbjct: 168 LARENRTDLAQACFGFLPHRSRLDLDGWSE 197


>gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/482 (11%), Positives = 97/482 (20%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------SVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +  L + + +            +            +   +   I     R
Sbjct: 552 KKKFLKNTPAIAALRESIQQ------------TLVESFQWVAGEQQVKWKRRWIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KIHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGL 698

Query: 672 RY 673
            +
Sbjct: 699 NW 700


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 28/203 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET    P          ++  + +   A     V L   +        L + L D
Sbjct: 27  LAVDTETMGLIP----------QRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTD 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  + H + F+  + +  LGI        CT + +                       
Sbjct: 77  PNIEKIFHYARFDLAMLRYHLGIQAWP--VFCTKIAS----------KLARTYTSKH-SL 123

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           K   G+      C   ++         N         EY   DV     +  +L  +   
Sbjct: 124 KDVVGE-----LCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQR 178

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           E    L  +        ++LDL+
Sbjct: 179 EERWELAQRCFQHLPTLVELDLL 201


>gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
          Length = 698

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 320 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 379

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 380 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 435

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 436 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 475

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 476 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 529

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 530 AI--------------------------------------------GQIVGAGKERGKEL 545

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 546 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 593

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 594 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 632

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 633 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 692

Query: 672 RY 673
            +
Sbjct: 693 NW 694


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 44/210 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSDL 57
           + +D ET        +G+  + +   + L   +  D    L          +    P +L
Sbjct: 27  VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL 114
            + L D ++  + H + F+  + +  LGI +     +CT + AR          L   C 
Sbjct: 76  KRVLADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 133

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                        G  L  +       +      +            Y   DV     L+
Sbjct: 134 ----------DMLGVELSKQQQTSDWGAKELKPEQ----------LAYAASDVLYLHALW 173

Query: 175 KRLIPLSDGE--RDLWLLDQTINDRGYRID 202
            ++  L D E  R+L            R+D
Sbjct: 174 DKMSALLDREGRRELAQACYDFLPARARLD 203


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 54/194 (27%), Gaps = 37/194 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +DIET     L             I L A       V   D          +   L
Sbjct: 63  KIIGVDIETTGLDFLEDS----------IRLIA-------VYSEDFEYVGEDLEAVKTLL 105

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D +V+ V H+S F+    KK     I    +  T ++ +         +          
Sbjct: 106 TDPSVLKVFHHSQFDVCFLKKA---GIDVCTFTDTFIMNQILNNLPVFDSLSR------- 155

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           L K+  GK+L                         Q    YC  D + T EL++ +  L 
Sbjct: 156 LAKVYLGKSLDKSLQH----------ADNWQSDLTQEHYAYCLDDAKTTYELYQHMFDLI 205

Query: 182 DGERDLWLLDQTIN 195
                     + I 
Sbjct: 206 INRYLYPRYRREIE 219


>gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain
            Friedlin]
 gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major
            strain Friedlin]
          Length = 1577

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 103/404 (25%), Gaps = 86/404 (21%)

Query: 267  HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320
             SN    A  +IL   A                 +   V S          +  + TGR 
Sbjct: 1199 KSNHNDSAASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1258

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378
            +      QN+P++++S                           +R   I+  G K   + 
Sbjct: 1259 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1292

Query: 379  ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            AD + +E   LA +A ++  ++   N  D +            D    +     K +   
Sbjct: 1293 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAKKI--- 1346

Query: 439  LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                  +  S            +    L
Sbjct: 1347 --------------------------KEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1380

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  ++ +     ++GV    K +T           +     V NV      +    +
Sbjct: 1381 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 1433

Query: 559  HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
              VL +  R V+++       L    +           L    VQ  + +I+ + M    
Sbjct: 1434 FPVL-TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1491

Query: 618  ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                           +  TVHD +  +   + Y  V      +M
Sbjct: 1492 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1535



 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 87/329 (26%), Gaps = 74/329 (22%)

Query: 2   SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y     +         A  +DD  V
Sbjct: 466 RYLIVDLETTTIRRYKRIANPFTKENYVVLSGARDYKGNVFMPRRYFDRSIAMRYDDPSV 525

Query: 43  ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95
                L +++ + ++    L  L +  V+ V HN  F+ +   +            +   
Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581

Query: 96  TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           T              G  + L++   +                     K       +   
Sbjct: 582 TMYGEYLLTGHEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626

Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199
           +  +   + +  EY   D+E T  +F K +    +           +  L    +   G 
Sbjct: 627 KETYEIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252
           + ++DL  +    +  +  +L   + +              +      L    F      
Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITLFF------ 740

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281
              ++  T             A+  +  R
Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769


>gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122]
 gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122]
          Length = 704

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDEITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHS---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  VHDEI           V   T    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDHWNFRCLLDTEGKMGP 698

Query: 672 RY 673
            +
Sbjct: 699 NW 700


>gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 558

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 127/484 (26%), Gaps = 126/484 (26%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   ++  G     D+  +L   +           +   +L +++ 
Sbjct: 156 RMRLLTASESAGMLVAAEMHRDGLPWRADVHRELLTGLLGERYAGGGEPRRLAELADEVS 215

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   GI +       L+ +         A + ++      
Sbjct: 216 AAFGRRVRPDLPADVVKA--FARAGIPVKSTRRWELEEL------DHPAVEPLIAYKKLY 267

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                   +  +    +GR R      G + +GRW+        +P+             
Sbjct: 268 RIWTAHGWSWLQDWVREGRFRPEY-QPGGTVSGRWTTNGGGALQIPK------------- 313

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++   + 
Sbjct: 314 -----------------VIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHD 356

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464
            D+Y     +AF+   +          K+  L   Y   +    K +A+           
Sbjct: 357 GDLYKALSDRAFSGDREH--------AKLAMLGAIYGQTSGDGLKNLAAL---------- 398

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     +  A ++         E  V    +G                        
Sbjct: 399 -------RRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPP------------------- 432

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
               A   Q+  +   +                        R      V+G  +      
Sbjct: 433 ---AASAGQDEEAGLPQEDPEGSGGAPDGGPARAR-----GRFTRNFVVQGSAADWALLM 484

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DTPYFS 643
              +R   +         Q +                  +V   HDE++   P +     
Sbjct: 485 LAALRRTIFE--------QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521

Query: 644 VGTL 647
           V  +
Sbjct: 522 VEAI 525


>gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3]
 gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase
 gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3]
 gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3]
          Length = 704

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 104/483 (21%), Gaps = 140/483 (28%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277
               + ++ +      ++  L     +      +         L+ +       Q A DL
Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V+ DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386
                                      +  R+          I          D +G+E 
Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  F NGE  +                   R   K       Y  G +
Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                                                    + +
Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
           KK +      +              +Q+    S++ VA   ++  +R      I     R
Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622
           ++                                ++Q+    I    +        + G 
Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638

Query: 623 D--------IVLTVHDEIVSETPDTP-YFSVGTL-CSLMTKNPS-WAKGLPLKAEGYEAK 671
                     +  +HDEI           +V  +    M      W     L  EG    
Sbjct: 639 KHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGA 698

Query: 672 RYR 674
            ++
Sbjct: 699 NWK 701


>gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34]
 gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34]
          Length = 786

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/388 (12%), Positives = 94/388 (24%), Gaps = 83/388 (21%)

Query: 288 AILKLNTLSEAV---SSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
           ++ K + + + V   + DG   +   L    A+ TGR SG     QNLPR   S      
Sbjct: 429 SVKKTSGMLQYVIPQNPDGSGIIHHRLNTC-ATVTGRLSGSNPNLQNLPRDGTS------ 481

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIK 400
                                V+    +  G+  ++   D + +E  +     G+   + 
Sbjct: 482 --------------------RVKQMFTSRFGESGRITEVDYSALEVVMGCVHTGDRKLLS 521

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
               G D++    A       +++                Y                D++
Sbjct: 522 LLQAGTDMHCYRLAFKEGKTYEEMYDLC-----HNADGPDY--------KYWKQQRTDIK 568

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520
             S                             A          +             +  
Sbjct: 569 PPS-----------------FAAQYGATAKGIAFATGCTVEYAQSFLDNEAKLFPDTIGF 611

Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
              + E       EG     R           R  R      P+  R  YS  + +    
Sbjct: 612 RAVVKEEVERTGAEG-----RLYREQADDGSYRVYRIGTWTSPAGAR--YSFRQKEQWKE 664

Query: 581 NTATSQLMRERTYGG-KLTENIVQA-------ISRDILCEGMKNAT--KNGYDIVLTVHD 630
                +  +   Y   ++     Q        ++  ++   +       N   ++  VHD
Sbjct: 665 VVPEQRKQKVMDYKETEMANYWCQGEAFFLMAVAAGMVLRALLARDWFDNQVCLITNVHD 724

Query: 631 EIVSETPDTPYF-SVGTLCS-LMTKNPS 656
            +  ++ +         L    M   P 
Sbjct: 725 ALYLDSANPEVGREASLLVKQCMEDAPK 752


>gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 672

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 58/223 (26%), Gaps = 13/223 (5%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
           D    + D          L + L         H       +    + + +P      T++
Sbjct: 424 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 480

Query: 99  LARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                       SL++            +                +    D     +   
Sbjct: 481 AGYLIDPDFQGGSLQDCADHFLHRH--AEEVTETEQGTLDIGMDDERAERDRKVVRNAAI 538

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
             L         +  +     L+   D E    +    +   G  +D   + +L E+   
Sbjct: 539 VSLLAR--TLARQLEQRCQYSLLR--DIELPTSVALFHMEHTGASVDRARLDELLEMFTD 594

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           E  ++++   +     + + +    L + LF   G++    ++
Sbjct: 595 ESNRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTK 636


>gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3]
 gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3]
 gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3]
          Length = 372

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/476 (11%), Positives = 102/476 (21%), Gaps = 140/476 (29%)

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLAS 284
           + +      ++  L     +      +         L+ +       Q A DLI   L  
Sbjct: 1   MFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 60

Query: 285 SGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                            V+ DG++ G++   GA  TGR +        +P          
Sbjct: 61  QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP---------- 109

Query: 342 QTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIA 393
                               +  R+          I          D +G+E R LA   
Sbjct: 110 -------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF- 155

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                +  F NGE  +                   R   K       Y  G +       
Sbjct: 156 -----MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKI----- 205

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                                                             + +KK +   
Sbjct: 206 ---------------------------------------GQIVGAGKERGKELKKKFLEN 226

Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
              +              +Q+    S++ VA   ++  +R      I     R++     
Sbjct: 227 TPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGRKVHVRSP 274

Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD------ 623
                                      ++Q+    I    +        + G        
Sbjct: 275 HA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGD 313

Query: 624 --IVLTVHDEIVSETPDTP-YFSVGTL-CSLMTKNPS-WAKGLPLKAEGYEAKRYR 674
              +  +HDEI           +V  +    M      W     L  EG     ++
Sbjct: 314 FAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGANWK 369


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 92/379 (24%), Gaps = 108/379 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               +  DGR+        A+ T R        QN+P+ ++S                   
Sbjct: 1062 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1102

Query: 356  PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    VR   ++  G +   V  D + +E  VLA +  +        +G D +V   
Sbjct: 1103 --------VRRLFVSRFGSQGRCVEVDYSQLEIVVLAILCNDANLTHDLNHGVDFHVKRA 1154

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A     P D++ +             GY+     +  +                      
Sbjct: 1155 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1180

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
               +  S         P       +     E   +     + G+ Q  + +         
Sbjct: 1181 RTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPNN 1240

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
             G   S                      +P+  R+                 +       
Sbjct: 1241 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1267

Query: 594  GGKLTENIVQAISRDILCEGMK----------NATKNGYDIVLTVHDEIVSETPDTPY-F 642
               +    +Q    + L + M           +  KN   ++  VHD +  +        
Sbjct: 1268 LPPIKNYPIQGYGAE-LAQMMLGRLFRHFMRRDFYKNRAFLINFVHDSVWMDCHVDVLRE 1326

Query: 643  SVGTLCSLMTKNPSWAKGL 661
             V   C ++     +   +
Sbjct: 1327 CVTDTCRILGSAHEYVPKV 1345


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 43/257 (16%)

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
              D  +A  + A     +Y     +    + ++  PL    +++           Y+ +
Sbjct: 8   WLLDQRKATDLVAELKEKQY-----DLEETVHEKFKPLPTFVKEIV--------PKYKKN 54

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEG 259
            +L     + + ++  ++     ++      +      +  YL L               
Sbjct: 55  GELSSVGLKFLGEDWTQVGGTFSRIDWPEF-NLGSRQQIGRYLRLFGWKPEKFTETGQAV 113

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319
             +  L        A  LI   L      I ++ +  +AV  DGR+ G +   GA  TGR
Sbjct: 114 VDEKTLETVTDIPEA-QLIAEYLMVGKR-IAQVQSSLDAVEDDGRVHGQVNAIGA-VTGR 170

Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379
            +         P                                 R+C I  +G KLV  
Sbjct: 171 MTHSSPNMAQTP-----------------------AVGVPYGYECRACWIVPDGHKLVGV 207

Query: 380 DLAGIEARVLAWIAGED 396
           D +G+E R+LA    + 
Sbjct: 208 DASGLELRMLASFMNDP 224


>gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 208

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIASGQKEAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            T   + H   F+  +   T G+        CT + +R          LK+         
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLIRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L          +       A  +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKEMLDVDISKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTER 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +               R  LDL+
Sbjct: 172 LLRDGRFDHATACFAFLPTRAKLDLL 197


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 29/175 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQSAMPSDLLQYL 61
           + ID ET        +G+  + +   + +   +  D    +         A   +L + L
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPLGHTEA--PNLKKLL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALN 117
            D  V  + H + F+       LG  +  +   CT + +R          LK+     L 
Sbjct: 68  GDPAVTKIFHFARFDLSALSNALG--VMPQPIYCTKIASRLCRTYTDRHGLKDLVREVLG 125

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                       +   +       +               L     + D    RE
Sbjct: 126 IDL---------SKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLARE 171


>gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F]
 gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F]
 gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F]
          Length = 723

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 96/768 (12%), Positives = 180/768 (23%), Gaps = 158/768 (20%)

Query: 7   DIETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           DIET            GV   AE         A    P+              + +    
Sbjct: 11  DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGI-VGGFKEYVQKVEEIAAT 65

Query: 64  ETVMCVAHN-SLFERIL---FKK-TLG--IDIPSKRWICTSVLARTN-------GLPS-- 107
            T M V HN   ++       K+   G   + P  + I T VL R          + +  
Sbjct: 66  PTGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125

Query: 108 ------------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                       SL+     L          +G+       K   +   Y       +  
Sbjct: 126 AGRLPPKMMGRQSLEAWGYRLG-------EMKGEYKHDYVAKCKAEGIEYKAGDE-WLFP 177

Query: 156 WQLFGEYCKRDVEATRELFKRLIPL----------------SDGERDLWLLDQTINDRGY 199
            Q   +Y  +DV  T  LFK+ +                     E D       +   GY
Sbjct: 178 SQEMLDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGY 237

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGIDLVD--- 255
            ++ ++V  L   +  +R +L + +         S       + +     TG DL     
Sbjct: 238 PMNTEMVEGLYRELTVKRAELLDKLR----STFGSWYAPKGGKEFFRHPRTGKDLPKYPR 293

Query: 256 ----------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSEAVSS 301
                              L      +  +D +     +  + +       + L++ +  
Sbjct: 294 VVYPKVGGIFKKPKNKAQRLGLEPCERDTRDTMEGAPFTPITYVEFNPGSGDHLAKVLME 353

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            G         G       +    +  +    +   E++ + +    R    A+      
Sbjct: 354 RGWEPVDFTDTGKPVVDDETLEHVKLPD-AEAQACVELVREYLVVQKRIGQAAEGKNAWL 412

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
                  +  +G+     +  G         +      +  ANG     T          
Sbjct: 413 KL-----VGPDGRMHGSINPCGAVTGRATHSS--PNMAQVPANGAPYGETCRGAFGAAWN 465

Query: 422 DKVSKEQRAI-----GKVMEL------ALGYQGGAKVF--------KTMASHCGLDLQQF 462
               K    I        +EL      A  + GGA              A + GL     
Sbjct: 466 KTDGKPDPWIQVGVDASGLELRCLGNRAAPFDGGAYAKTVVEGDIHWANAVNAGLAPNVP 525

Query: 463 SQNVKSTS-TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521
                     F +  +   +         +  +           + K +      +  L 
Sbjct: 526 RDKSNHDHDAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGSALMKKFIEGTPAIKDL- 584

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
                     V       ++ V     +  +R      +     RR+             
Sbjct: 585 -------REAVSNTLISESKWVDGENIVKWKRR----WLKGLDGRRIHIRSPHS------ 627

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD--------IVLTVH 629
                              ++Q     +    +        + GY          +  VH
Sbjct: 628 ---------------ALNALLQGDGAVVCKHWIVETERMLEEAGYVHGWEGDFAYMAWVH 672

Query: 630 DEIVSETPDTP-YFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYR 674
           DE+               +  L M K   +      L  EG     ++
Sbjct: 673 DELQIACRTQEIAERTVEIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720


>gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15]
 gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15]
          Length = 722

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 71/270 (26%), Gaps = 77/270 (28%)

Query: 56  DLLQYLR----DETVMCVAHN-SLFERILFKKTL------GIDIPSKRWICTSVLARTNG 104
           D ++ L         + V HN   ++     K         ++IP ++ + T VL+R   
Sbjct: 42  DYIKALEAEAAKPDGLIVFHNGIKYDIPALAKIKKSLTGKNLNIPRQKVLDTLVLSRLLH 101

Query: 105 L---------------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
                                   SL+     L   +   K                   
Sbjct: 102 ANLKNTDAGLLRKGILPGDRYGSHSLEAWGYRLGEMKGEYKD------------DFKRDL 149

Query: 144 PYDCTRANHVQAWQLFGE----YCKRDVEATRELFKRLI--------------------- 178
                       W+ F E    YC++DV  T +L ++ +                     
Sbjct: 150 AARGETYVDGMEWEHFNEPMYDYCEQDVRVTLKLLRKFLADKFYFGSDVAPNGEQWMGGI 209

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E +       +   G+  +     +L + +A ER  L   +++           T
Sbjct: 210 RAVRLEHEAAWTLAQMERNGFPFNKQKAERLYQELAAERSDLLVKLIETFGTW---WAPT 266

Query: 239 YALRMYLFLITGI-----DLVDMSEGTLKS 263
                +L   TG       +V  ++     
Sbjct: 267 KGTEPFLHPKTGKVLSKYPMVKRAKSGNAD 296



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 71/305 (23%), Gaps = 56/305 (18%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKD 276
           I    + I  S      ++  L            +        TL+ +     + Q A  
Sbjct: 320 IYTPIEHITFSPTSRDHIQKVLKDAGWEPTEFTDKGAPIVDDETLEGVTVDDPVKQAAIT 379

Query: 277 LILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LI   L                L    + DG + G++   GA  TGR +        +P 
Sbjct: 380 LIQRYLMIQKRIGQLAEGKKAWLLYCETEDGFIHGSINPNGAG-TGRATHSHPNMGQVP- 437

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-----NGK---KLVVADLAGI 384
                                           R    A+      G      V  D +G+
Sbjct: 438 ----------------------SAKSPYGPECRELFGAAYASHLPGWEAVVQVGRDASGL 475

Query: 385 EARVLAWI-------AGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVME 436
           E R L          A  +  +    +  +      AK       D+     R   K   
Sbjct: 476 ELRCLGHFGAKFDGGAYVEQVLNGDVHWANAVAAGIAKDPVRIKGDEQHDRWRDNAKTFI 535

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
            A  Y  G           G          K  S  E+    +S    + +        +
Sbjct: 536 YAFLYGAGNGKI---GQIVGGGESHGKALKK--SFLENTPVIKSLSDSLIEALVAEQKWN 590

Query: 497 KLIGT 501
            +   
Sbjct: 591 NVTKR 595


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 35/187 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  Y +   + L  ++  +    L     Q+    +L   L D
Sbjct: 20  LAIDTET--------MGLNLYRD--KLCLLQFSNGNGDAHLVHFLNQNYNAPNLKNLLSD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +    + H + F+    KK LGID+  +   CT + ++          LK+ C  L    
Sbjct: 70  KERCKIFHFARFDLAAIKKYLGIDL--ENIFCTKISSKLVRTYTESHGLKDICREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                        A+++ + Q   EY  +DV    +L + LI +
Sbjct: 124 --------------LGVNISKQQQSSYWGADNLSSDQQ--EYAAKDVLYLHKLREHLIEM 167

Query: 181 SDGERDL 187
              E   
Sbjct: 168 LVKENRF 174


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 63/460 (13%), Positives = 122/460 (26%), Gaps = 96/460 (20%)

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T VL+R      ++ +            ++    +L A   +       +    +N   
Sbjct: 1   DTLVLSRL--YYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKCFKGDFAKNDSNDWS 58

Query: 155 AWQ-LFGEYCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRGYRIDLDLV 206
            +     +YC +D + T  L++ L             E D+ +L       G+R D+D  
Sbjct: 59  TYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDAA 118

Query: 207 LKLQELIAQERKKLDEDIVK--------------------------LTDGIIRSSRQTYA 240
           ++++  +  E   + E I K                          +T     +      
Sbjct: 119 VRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTDFNPTSRQN 178

Query: 241 LRMYLFLITGIDL--------VDMSEGTLKSIL--------SHSNITQLAKDLILNRLAS 284
           +   L    G             + E TL  +            +        +L     
Sbjct: 179 IAWALQTFRGARFTKITETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKW 238

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            G      N+   ++  DG +  +     +++TGR +        +              
Sbjct: 239 LGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV-------------- 282

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                         +++   R   +   G  +V ADL G+E R+L         + AF  
Sbjct: 283 --------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHY------LAAFDE 322

Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
           G    V           D+V    R   K +  A  Y  G             +L    +
Sbjct: 323 GSFAEVVVNGDIHQQNADRV-GCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSDAQK 378

Query: 465 NVKSTSTFEDW----EQAESHHLWMQDQYPEFAVKDKLIG 500
                     +       E     ++ +         L G
Sbjct: 379 KTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDG 418


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 36/207 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  + +D E         +G+    +   + L   +++D    L         P +L + 
Sbjct: 19  IRSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKI 67

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALN 117
           L D+ +  + H + F+  + +  L  +  +    CT + +R         SLK  CL L 
Sbjct: 68  LEDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL- 124

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        L  +  K    S   +    +          Y   DV     + ++L
Sbjct: 125 -------------LDTKLNKQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKL 165

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD 204
             + + E    L  +       RI+LD
Sbjct: 166 DLMLERENRKELAQKCFEFLPTRIELD 192


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 32/171 (18%)

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT--LKSILSHSNITQLAKDLILNRLASSGS 287
             + +      +   L     +      +G   +      + +      LIL  L     
Sbjct: 54  VEVFNPASRQQIARRLESKGVVWEKRTEKGNIIVDETTLGAYVDVPEAVLILEYLTLGKR 113

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +   +    +A  SDGR+ G +   G + TGR +        +P                
Sbjct: 114 S-AMVKGWLDAYESDGRIHGYVNSNG-TVTGRMTHSNPNMAQIPS--------------- 156

Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398
                            RSC +   G+KLV  D +G+E R+LA    +D  
Sbjct: 157 -------------GAEYRSCFVVPQGRKLVGVDASGLELRMLAHYMRDDAF 194


>gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
 gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
          Length = 558

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 127/484 (26%), Gaps = 126/484 (26%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   ++  G     D+  +L   +           +   +L +++ 
Sbjct: 156 RMRLLTASESAGMLVAAEMHRDGLPWRADVHRELLTGLLGERYAGGGEPRRLAELADEVS 215

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   GI +       L+ +         A + ++      
Sbjct: 216 AAFGRRVRPDLPADVVKA--FARAGIPVKSTRRWELEEL------DHPAVEPLIAYKKLY 267

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                   +  +    +GR R      G + +GRW+        +P+             
Sbjct: 268 RIWTAHGWSWLQDWVREGRFRPEY-QPGGTVSGRWTTNGGGALQIPK------------- 313

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++   + 
Sbjct: 314 -----------------VIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHD 356

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464
            D+Y     +AF+   +          K+  L   Y   +    K +A+           
Sbjct: 357 GDLYKALSDRAFSGDREH--------AKLALLGAVYGQTSGDGLKNLAAL---------- 398

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     +  A ++         E  V    +G                        
Sbjct: 399 -------RRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPP------------------- 432

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
               A   Q+  +   +                        R      V+G  +      
Sbjct: 433 ---AASAGQDEEAGLPQEDPEGSGGAPDGGPARAR-----GRFTRNFVVQGSAADWALLM 484

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DTPYFS 643
              +R   +         Q +                  +V   HDE++   P +     
Sbjct: 485 LAALRRTIFE--------QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521

Query: 644 VGTL 647
           V  +
Sbjct: 522 VEAI 525


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 36/206 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E         +G+    +   + L   +++D    L         P +L + L
Sbjct: 48  RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 96

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D+ +  + H + F+  + +  L  +  +    CT + +R         SLK  CL L  
Sbjct: 97  EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 152

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       L  +  K    S   +    +          Y   DV     + ++L 
Sbjct: 153 ------------LDTKLNKQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKLD 194

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204
            + + E    L  +       RI+LD
Sbjct: 195 LMLERENRKELAQKCFEFLPTRIELD 220


>gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13]
 gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653]
 gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653]
          Length = 205

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCMVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            ++  + H   F+  +     G     +   CT + ++                      
Sbjct: 71  RSITKIFHFGRFDLAVLANAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        Q   EY   DV     L   L    + 
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171

Query: 184 ERDLWLLDQTINDRGYR 200
           +      +        R
Sbjct: 172 DGRTKQAEACFKFLPTR 188


>gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
 gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
          Length = 552

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 71/290 (24%), Gaps = 63/290 (21%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I          +     L    F   G+DL +     L+ +         A
Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARVGVDLPNTRAWVLRGVE------HPA 255

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L                 +A  S GR        G   +GRW+        +P+  
Sbjct: 256 APLVLEYKELYRIWTAHGWAWRDAWVSGGRFHPEYVPGGV-VSGRWATRGGGALQIPK-- 312

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G   VVAD   +E RVLA ++ 
Sbjct: 313 ----------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAVSE 344

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++    A   G+                      RA  KV  L   Y             
Sbjct: 345 DERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA------- 388

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                             +++  A  +            +    +G  C 
Sbjct: 389 ---------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 429



 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 23/199 (11%)

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
             A   +        + ++ +    +   +    +        + +           G A
Sbjct: 329 ADAGQLEPRVLAAVSEDERLAAAGGAGDLYAALARDAFAGDRAKAKVALLGAMYGQTGGA 388

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R  +           E  A   + GG + +      P       + +  +  
Sbjct: 389 AVPALAVLRKNYPTAFGY----VEAAARTGEAGGLVRSWLGRTCPPGSAGFAEGEEAM-- 442

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMKNATKN 620
           P       +D           +++  R R  G      ++QA + +              
Sbjct: 443 PDG----GADPHS-------PSARAARSR--GRFTRNFVIQATAAEWASTLLATLRTELA 489

Query: 621 G--YDIVLTVHDEIVSETP 637
           G   ++V   HDE++   P
Sbjct: 490 GTEAELVFFQHDEVMVHCP 508


>gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
 gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
          Length = 235

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 30/181 (16%)

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           ++T+  A  +                   R    + ++     R+  + +     +  +T
Sbjct: 16  NITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRRFKETILKATSSST 75

Query: 583 ATSQLM--RERTYGGKLTENIVQAISRDILCEGMKNA----------------------- 617
             ++    R      +     +Q  S   + + M N                        
Sbjct: 76  FKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYK 135

Query: 618 ---TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWA-KGLPLKAEGYEAKR 672
               ++   IVL +HDE++ + P       +  + ++M         G+   ++ + +  
Sbjct: 136 SILEEHDIHIVLQIHDELIFDVPQDVSQDVLKKISNIMLNAIPSTHLGVTFHSDIHTSPY 195

Query: 673 Y 673
           +
Sbjct: 196 W 196


>gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 235

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 30/181 (16%)

Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582
           ++T+  A  +                   R    + ++     R+  + +     +  +T
Sbjct: 16  NITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRRFKETILKATSSST 75

Query: 583 ATSQLM--RERTYGGKLTENIVQAISRDILCEGMKNA----------------------- 617
             ++    R      +     +Q  S   + + M N                        
Sbjct: 76  FKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYK 135

Query: 618 ---TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWA-KGLPLKAEGYEAKR 672
               ++   IVL +HDE++ + P       +  + ++M         G+   ++ + +  
Sbjct: 136 SILEEHDIHIVLQIHDELIFDVPQDVSQDVLKEISNIMLNAIPSTHLGVTFHSDIHTSPY 195

Query: 673 Y 673
           +
Sbjct: 196 W 196


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 36/206 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E         +G+    +   + L   +++D    L         P +L + L
Sbjct: 20  RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 68

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D+ +  + H + F+  + +  L  +  +    CT + +R         SLK  CL L  
Sbjct: 69  EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       L  +  K    S   +    +          Y   DV     + ++L 
Sbjct: 125 ------------LDTKLNKQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKLD 166

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204
            + + E    L  +       RI+LD
Sbjct: 167 LMLERENRKELAQKCFEFLPTRIELD 192


>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
 gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
          Length = 209

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 28/204 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L         V      +      +L Q L  
Sbjct: 27  IAVDTETMGLLP----------QRDRLCLVQLCNSQGKVTAICIAKGQTEAPNLKQLLEA 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H + F+    +    ++I  +   CT + ++     ++L              
Sbjct: 77  THILKVFHFARFDVATLRH--NLEIQVQPVFCTKIASKLARTYTNLHGL----------- 123

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K ++    +  +D         N V   +    Y   DV     + ++L  + + 
Sbjct: 124 -----KDVVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLER 178

Query: 184 ERDLWLLDQTINDRGYRIDLDLVL 207
           E    L  Q        + LDL+ 
Sbjct: 179 EGRWELAQQCFQVLPTLVSLDLLQ 202


>gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism
           HF4000_005D21]
 gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 214

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 32/205 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E          G+        ++L  ++  +    +     +S    ++++ L +
Sbjct: 29  LAIDTE--------GSGLQIPHRD-KLSLVQFSAGNNDAYIVQPNRKSYKAPNIVKILEN 79

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSE 120
             +  + H   ++    +  L      K    T + ++          LK+  L      
Sbjct: 80  AKITKIGHYLRYDVSGLEYFL--KCNVKNIFDTKIASKLCRTYSQNHGLKDLALEF---- 133

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                   K L  R      +   Y+ T A          +YC  DV    ++   L  +
Sbjct: 134 ------CSKKLDKRLGSSDWNKNLYELTDA--------QLQYCSNDVIYLHKIKDALYKM 179

Query: 181 SDGERDLWLLDQTINDRGYRIDLDL 205
              E  L L +  I     RI LD 
Sbjct: 180 LVRENRLELYESCIQFLKTRIKLDQ 204


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L  ++  +    L     Q+    +L   L D
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFENQNYTAPNLKALLSD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           ++   + H + F+    KK L  +I  +   CT + ++          LK+ C  L    
Sbjct: 70  KSRCKIFHFARFDLAAIKKYL--EIELENIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                       RA+++       EY  +DV    +L   L  +
Sbjct: 124 --------------LNINISKQQQSSYWRADNLS--SEQKEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E    L          R +LDL+
Sbjct: 168 LLKENRFELAQDIFRFVPTRANLDLL 193


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 85/348 (24%), Gaps = 75/348 (21%)

Query: 194 INDRGYRIDLDLVLKLQE----------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           +   G     D      E           + Q  + +  +I     G   +      +  
Sbjct: 148 MGFDGLPFSTDSHRAFLEATLGPRPAGYDLPQRIQDVSVEIGAAF-GRRINPASHVEVVD 206

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             F   GI+L    +  L+ +         A  L+L+    S           ++   D 
Sbjct: 207 -AFRREGIELASTRKHLLREV------DHPAVPLLLHHRDLSKLFSTNGWQWLDSWVRDN 259

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R R      G   +GRW+        +P+                               
Sbjct: 260 RFRPVYVPGGV-VSGRWASRGGGALQIPKP------------------------------ 288

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           +RS +IA  G   V+AD   +E R+LA ++G+   + A    +                 
Sbjct: 289 LRSSVIADPGHTFVIADAGQLEPRILAAMSGDTRMVAAAGADDLYAPVAAETFDG----- 343

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
                R   KV  L + Y   A                       T     +  A  +  
Sbjct: 344 ----DRGKAKVAILGVLYGATAG----------------EARSLLTLLRTRFPVAVEYVE 383

Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                     V    +G AC      +   H       +         
Sbjct: 384 RAARAGERGEVVHSWLGRACPPPSPDFW-SHGDARSRGRFTRNFVVQA 430


>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 209

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 63/204 (30%), Gaps = 34/204 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + L      +  V     T+       L Q +  
Sbjct: 27  IAVDTET--------MGLNPHRD--RLCLIQLCDPEGYVTAIRVTKGQQEAPKLKQLMEA 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             +  V H + F+    +   GI+  +    CT + ++          LK+    L    
Sbjct: 77  SNITKVFHFARFDVAQLRHHFGIE--TTPIFCTKIASKLARTYTSSHGLKSL--VL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                 EG  L         D         N  +  +    Y   DV     + ++LI +
Sbjct: 129 ----ELEGVEL---------DKTAQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
            + E  + L     N     + LD
Sbjct: 176 LNRENRMELARNCFNCLPVLVSLD 199


>gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
 gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
          Length = 217

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 35/215 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D ET        +G+    +   + L   A     + +    +       L Q L 
Sbjct: 34  RIAVDTET--------MGLKPQRD--RLCLVQLAHPQGLITVIRIGQGQRSAPHLKQLLE 83

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
                 V H + F+    +  L I +      CT + +   RT      L          
Sbjct: 84  HPGTTKVFHFARFDITTLRYHLDIWVQP--LFCTKIASKLARTYSPRHGL---------- 131

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                    K LI       +D         N     +    Y   DV        +L+ 
Sbjct: 132 ---------KDLIRELEGVELDKTVQSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVE 182

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           +   E   W L Q        +    +L+ + +  
Sbjct: 183 MLQRENR-WQLAQECFHCLPTLASLDLLEFEAIFE 216


>gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 499

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 86/358 (24%), Gaps = 74/358 (20%)

Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256
            G  ++  L  +  + +    ++    +    D    S      L   L    G+ +   
Sbjct: 113 HGELLERQLGERRGQALPARIEEAAGRVRAALDDPAASLDSQPRLLKSLH-RVGLFVEST 171

Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
           S   L                +++             T       DGR R      G   
Sbjct: 172 SRWELAE------HDHPVVAPLVSYKKLMRLYTANGWTWMSEWVRDGRFRPVYVPAGV-V 224

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376
           TGRW+        +PR                               +R  + A  G  L
Sbjct: 225 TGRWASSGGGALQIPR------------------------------QLRVAVRADPGWTL 254

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD+A +E RVLA +A +     A    +               +  +   RA  K+  
Sbjct: 255 VTADVAQLEPRVLAAMARDTALADAARRRDLYSGVV---------EAGAVATRAEAKIAM 305

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
           L   Y                                 + +A +          E  V  
Sbjct: 306 LGAMYGATTG----------------ESGRLLPRLRRTFPRAMALVDHAARVGEEGGVVS 349

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
             +G       +AWR            +          G   +  R +   R    R+
Sbjct: 350 TWLGRTSPGPGEAWR-----------AVQSRAGDAEASGIDETRARRSARDRGRFTRN 396


>gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
 gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
          Length = 552

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 71/290 (24%), Gaps = 63/290 (21%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I          +     L    F   G+DL +     L+ +         A
Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARAGVDLPNTRAWVLRGVE------HPA 255

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L                 +A  S GR        G   +GRW+        +P+  
Sbjct: 256 APLVLEYKELYRIWTAHGWAWRDAWVSGGRFHPEYVPGGV-VSGRWATRGGGALQIPK-- 312

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G   VVAD   +E RVLA ++ 
Sbjct: 313 ----------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAVSE 344

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           ++    A   G+                      RA  KV  L   Y             
Sbjct: 345 DERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA------- 388

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                             +++  A  +            +    +G  C 
Sbjct: 389 ---------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 429



 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 23/199 (11%)

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
             A   +        + ++ +    +   +    +        + +           G A
Sbjct: 329 ADAGQLEPRVLAAVSEDERLAAAGGAGDLYAALARDAFAGDRAKAKVALLGAMYGQTGGA 388

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R  +           E  A   + GG + +      P       + +  +  
Sbjct: 389 AVPALAVLRKNYPTAFGY----VEAAARTGEAGGLVRSWLGRTCPPGSAGFAEGEEAM-- 442

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMKNATKN 620
           P       +D           +++  R R  G      ++QA + +              
Sbjct: 443 PDG----GADPHS-------PSARAARSR--GRFTRNFVIQATAAEWASTLLATLRTELA 489

Query: 621 G--YDIVLTVHDEIVSETP 637
           G   ++V   HDE++   P
Sbjct: 490 GTEAELVFFQHDEVMVHCP 508


>gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39]
          Length = 207

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 29/211 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L         V             +L   L  
Sbjct: 25  LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H + F+    +  LGI++      CT + +                       
Sbjct: 75  TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIAS----------KLARTYTGKH--- 119

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K LI       +D         N     +    Y   DV        +L  +   
Sbjct: 120 ---GLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKR 176

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           E    L           +    +++  ++  
Sbjct: 177 EERWDLALDCFQCLPTIV-TLDLMQFDDIFK 206


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 44/210 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSDL 57
           + +D ET        +G+  + +   + L   +  D    L          +    P +L
Sbjct: 66  VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 114

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL 114
            + + D ++  + H + F+  + +  LGI +     +CT + AR          L   C 
Sbjct: 115 KRVMADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 172

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                        G  L  +       +      +            Y   DV     L+
Sbjct: 173 ----------DMLGVELSKQQQTSDWGALELKPEQ----------LAYAASDVLYLHALW 212

Query: 175 KRLIPLSDGE--RDLWLLDQTINDRGYRID 202
            ++  L D E  R+L            R+D
Sbjct: 213 DKMSALLDREGRRELAQACYDFLPARARLD 242


>gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
 gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
          Length = 205

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            ++  + H   F+  +     G     +   CT + ++                      
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        Q   EY   DV     L   L    + 
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171

Query: 184 ERDLWLLDQTINDRGYR 200
           +      +        R
Sbjct: 172 DGRTKQAEACFKFLPTR 188


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 86/338 (25%), Gaps = 74/338 (21%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA-----------QERKKLDEDIVKLTDGII 232
           E    LL   +   G     D+   L   +             +  +L  ++ +      
Sbjct: 171 ESAGALLACEMAHDGLPWRADVHDALLTELLGPRPAIPGTQPAKLAELALEVQRALGARP 230

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      +        G+ L       LK++         A  L++     S       
Sbjct: 231 FNLDSHTQVIKAFADR-GVQLSSTRSWELKAV------DHPAAALLVRYKELSRLHAAHG 283

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
                A +  GR R      G   TGRW+        +PR                    
Sbjct: 284 WAWQAAWARGGRFRPEYV-VGGVVTGRWASRGGGALQIPRT------------------- 323

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R  ++A  G  LVVAD A +E RVLA ++G+    +  A G+      
Sbjct: 324 -----------LRRAVVADPGWLLVVADAAQLEPRVLAALSGDAGLARTAAGGDLYAALA 372

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
            +              R   K+  L   Y         + +                   
Sbjct: 373 ASAFHG---------DREQAKLGLLGAMYGQTGGGIGPLLNTL----------------R 407

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             +  A  +         +  V    +G  C      W
Sbjct: 408 RRYPDAMGYVEAAARTGEDGGVVASRLGRVCPPPSADW 445


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 88/333 (26%), Gaps = 67/333 (20%)

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
            G   +      +    F   GI+L    +  L+ +         A  L+L     S   
Sbjct: 192 FGRRINPASHVEVVD-AFRREGIELASTRKHLLREV------DHPAVPLLLRHRDLSKLF 244

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
                   ++   D R R      G   +GRW+        +P+                
Sbjct: 245 STNGWQWLDSWVRDDRFRPVYVPGGV-VSGRWASRGGGALQIPKP--------------- 288

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +RS +IA  G   V+AD   +E R+LA ++G+   + A    +  
Sbjct: 289 ---------------LRSSVIADPGHTFVIADAGQLEPRILAAMSGDARMVAAAGADDLY 333

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
                               R   KV  L + Y   A                       
Sbjct: 334 APVAAETFDG---------DRGKAKVAILGVLYGATAG----------------EARSLL 368

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR----AKHQGVLQLWKDL 524
           T     +  A  +            V    +G AC      +     A+ +G       +
Sbjct: 369 TLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSRGRFTRNFVV 428

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
               A       +   RR+A+ P   +   + D
Sbjct: 429 QATAAEWALCVLADLRRRLADDPDSELVFFQHD 461


>gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457]
 gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str.
           870]
 gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513]
 gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis
           M163/99/10]
 gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94]
 gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1]
 gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1]
 gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str.
           292]
 gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis
           M292/94/1]
 gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33]
 gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1]
 gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94]
 gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str.
           C68]
 gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99]
 gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28]
 gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 205

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            ++  + H   F+  +     G     +   CT + ++                      
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        Q   EY   DV     L   L    + 
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171

Query: 184 ERDLWLLDQTINDRGYR 200
           +      +        R
Sbjct: 172 DGRTKQAEACFKFLPTR 188


>gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 45/230 (19%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+++D+     L   +      ++ ++ ++                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294
               +   L    G      +E     +       I      LI   L      +  +++
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
             + V               + TGR +        +P                       
Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                     RS     +G +L+  DL+GIE R LA    +    +   N
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRRLAHYMQDPEWQEELLN 205


>gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01]
 gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 906

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 58/452 (12%)

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           ER  L     +    I  +          L          ++E +  +I           
Sbjct: 467 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 525

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +++R  +  ++          +  DGRL       GA   G  +G + Q         
Sbjct: 526 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 571

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                            +     +  + +R+  I   G  ++  D    +  +L    G+
Sbjct: 572 ------------YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGD 619

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--------VSKEQRAIGKVMELALGYQGGAKV 447
           +   KA   G++    T                     K  R   +     +     A  
Sbjct: 620 EDFTKAVTEGKESVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHT 679

Query: 448 FKT--MASHCGLDLQQFSQNVKSTSTFE---DWEQAESHHLWMQDQYPEFAVKDKL---I 499
             +     +   D+ +  +        E     ++A++    +     +      +    
Sbjct: 680 LNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASS 739

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                L K+ +  +   + +L   L E F    +    +  +  A      ++     + 
Sbjct: 740 TEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLW 799

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
              P    L Y+ +  +    N   +   RE T       N                   
Sbjct: 800 CKSPHKL-LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPA 844

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            G   V + HDE+  E P      V  +   M
Sbjct: 845 IGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 876


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 55/220 (25%), Gaps = 23/220 (10%)

Query: 363 CVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
            VR    A    G  LVVAD   +E R+LA +      ++AF  G D +  T    ++  
Sbjct: 31  KVRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDFHSRTAVGMYDHI 90

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            D +                        K +    G             ++     +  +
Sbjct: 91  KDAIRDN---------------------KVLLEWDGEGESPLPLVKDLYASERRKAKVLN 129

Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
             +         A   K      +     W A    V Q  +   EG     +    +  
Sbjct: 130 FSIAYGKTAHGLAADFKTSKEEAQATVDKWYADRFEVRQWQEKTKEGARQEGKVRTLLGR 189

Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
            R          + K        ++            SY 
Sbjct: 190 TRPLPGINAPDFKSKGHSERAAINTPIQPLFKPSITRSYR 229


>gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
          Length = 209

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 28/198 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L         V             +L   L  
Sbjct: 27  LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H + F+    +  LGI++      CT + +                       
Sbjct: 77  TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIAS----------KLARTYTGKH--- 121

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K LI       +D         N     +    Y   DV        +L  +   
Sbjct: 122 ---GLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKR 178

Query: 184 ERDLWLLDQTINDRGYRI 201
           E    L           +
Sbjct: 179 EERWDLALDCFQCLPTIV 196


>gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 208

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 50/203 (24%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEARNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            T   + H   F+  +   T G+   +    CT + +R                      
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--ATPVFCTKIASRLI-----------------RTY 114

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G     +       S     +     +      EY   DV     L  +L      
Sbjct: 115 TDRHGLKDNLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIR 174

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           +               R  LDL+
Sbjct: 175 DGRYDHATACFEFLPTRAKLDLL 197


>gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 909

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 58/452 (12%)

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           ER  L     +    I  +          L          ++E +  +I           
Sbjct: 470 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 528

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +++R  +  ++          +  DGRL       GA   G  +G + Q         
Sbjct: 529 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 574

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                            +     +  + +R+  I   G  ++  D    +  +L    G+
Sbjct: 575 ------------YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGD 622

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--------VSKEQRAIGKVMELALGYQGGAKV 447
           +   KA   G++    T                     K  R   +     +     A  
Sbjct: 623 EDFTKAVTEGKESVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHT 682

Query: 448 FKT--MASHCGLDLQQFSQNVKSTSTFE---DWEQAESHHLWMQDQYPEFAVKDKL---I 499
             +     +   D+ +  +        E     ++A++    +     +      +    
Sbjct: 683 LNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASS 742

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                L K+ +  +   + +L   L E F    +    +  +  A      ++     + 
Sbjct: 743 TEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLW 802

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
              P    L Y+ +  +    N   +   RE T       N                   
Sbjct: 803 CKSPHKL-LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPA 847

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            G   V + HDE+  E P      V  +   M
Sbjct: 848 IGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 879


>gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
 gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
          Length = 568

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 74/494 (14%), Positives = 117/494 (23%), Gaps = 140/494 (28%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           RL  L   E    L+   +   G   D+    ++   +   R  L               
Sbjct: 163 RLWLLLAAESAGALIAAEMTVAGVPWDVVEHDRILTDLLGPRPAL-------GYRPALLE 215

Query: 236 RQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
            +   +   L +   +D                T         I   A   +L     S 
Sbjct: 216 AKAAQVSAALGVEVNLDSPVELLRSMRSAGLPATSTRSWELQQIDHPAIAPLLEYKKMSR 275

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
                     +   +DGR R      G   TGRW+        LP               
Sbjct: 276 LMTANGWHWLDTWVADGRFRPVYVPGGV-VTGRWASDGGGALQLP--------------- 319

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
                            +RS + +  G  LVVAD A +E R+LA ++G+           
Sbjct: 320 ---------------HQIRSAVRSDPGWSLVVADAAQLEPRILAAMSGD---------AA 355

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
                  A  +   +   + E R   K   L   Y                         
Sbjct: 356 MAEAGRAADMYEGMVATGAVETRQQAKFGMLGAMY------------------------- 390

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                                            G     + +A+             L E
Sbjct: 391 --------------------------GGTQGESGRMLPRITRAFPQAL--------ALVE 416

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA-TS 585
             A   ++G  +S     + P              LPS+                    +
Sbjct: 417 AAARAGEQGEVVSTWLGRSSP--------------LPSAEWRSAHSAASAEGGSAAEQEA 462

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGY----DIVLTVHDEIVSE 635
              + R++G      +VQ  + +     M        A   G      +   +HDEI+  
Sbjct: 463 VRTQARSWGRFTRNFVVQGTAAEWALCWMSLLRLRLRALSEGLTDGPHLAFFLHDEIMVH 522

Query: 636 TPDTPYFSVGTLCS 649
           TP      V TL  
Sbjct: 523 TPTGLADEVATLVQ 536


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 23/177 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    + +    +L + L D
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
             V+ + H + F+     K  G  +  +   CT + +R          LK+    L    
Sbjct: 70  PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               +    +   +      DS               L     K D    RE    L
Sbjct: 124 ----LGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDKLDTMLARENRTDL 176


>gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania
            infantum JPCM5]
          Length = 1579

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 101/404 (25%), Gaps = 86/404 (21%)

Query: 267  HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320
             SN       +IL   A                 +   V S          +  + TGR 
Sbjct: 1201 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1260

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378
            +      QN+P++++S                           +R   I+  G K   + 
Sbjct: 1261 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1294

Query: 379  ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            AD + +E   LA +A ++  ++   N  D +            D    +     K +   
Sbjct: 1295 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAKKI--- 1348

Query: 439  LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                  +  S            +    L
Sbjct: 1349 --------------------------KEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1382

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  ++ +     ++GV    K +T           +     V NV      +    +
Sbjct: 1383 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 1435

Query: 559  HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
              VL +  R V+++       L                L    VQ  + +I+ + M    
Sbjct: 1436 FPVL-TGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1493

Query: 618  ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                           +  TVHD +  +   + Y  V      +M
Sbjct: 1494 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 88/329 (26%), Gaps = 74/329 (22%)

Query: 2   SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y     +         A  +DD  V
Sbjct: 466 RYLIVDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPSV 525

Query: 43  ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95
                L +++ + ++    L  L +  V+ V HN  F+ +   +            +   
Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581

Query: 96  TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           T              G  + L++   +                     K       +   
Sbjct: 582 TMYGEYLLTGHEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626

Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199
           +  +   + +  EY   D+E T  +F K +    +           +  L    +   G 
Sbjct: 627 KETYEIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252
           + ++DL  +    +  +  +L   + +              +      L  + F      
Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------ 740

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281
              ++  T             A+  +  R
Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 35/201 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET    P+             + +  ++  D    +      +    ++ + L 
Sbjct: 19  IVAIDTETMGLNPMRD----------RLCVIQFSSGDGHAHIVQIEPDAPQAPNICKILL 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D+  + + H + F+  + K    I+I      CT + ++          LKN        
Sbjct: 69  DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLRE---- 122

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                                 S     +     +  +   EY   DV    +L  +L  
Sbjct: 123 ----------------MLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNL 166

Query: 180 LSDGERDLWLLDQTINDRGYR 200
               E    + +   N    R
Sbjct: 167 NLKRENRYEIAEACFNFLPMR 187


>gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
 gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
          Length = 210

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L         V              L Q +  
Sbjct: 28  IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T++ V H + F+    +   GI+       CT + ++          LK+    L    
Sbjct: 78  KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 131

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      I                 +           Y   DV       ++LI +
Sbjct: 132 ---------EGIELDKTSQSSDWGNSANLSVAQL------SYAANDVRYLIPAKEKLITM 176

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              E    L +Q  N     + LD + + +++  
Sbjct: 177 LQREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209


>gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1579

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 101/404 (25%), Gaps = 86/404 (21%)

Query: 267  HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320
             SN       +IL   A                 +   V S          +  + TGR 
Sbjct: 1201 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1260

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378
            +      QN+P++++S                           +R   I+  G K   + 
Sbjct: 1261 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1294

Query: 379  ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            AD + +E   LA +A ++  ++   N  D +                 ++    K  E  
Sbjct: 1295 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRSKKIKEPEF- 1353

Query: 439  LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                  +  S            +    L
Sbjct: 1354 -------------------------------VKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1382

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  ++ +     ++GV    K +T           +     V NV      +    +
Sbjct: 1383 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 1435

Query: 559  HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
              VL +  R V+++       L                L    VQ  + +I+ + M    
Sbjct: 1436 FPVL-TGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1493

Query: 618  ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                           +  TVHD +  +   + Y  V      +M
Sbjct: 1494 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 88/329 (26%), Gaps = 74/329 (22%)

Query: 2   SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y     +         A  +DD  V
Sbjct: 466 RYLIVDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPSV 525

Query: 43  ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95
                L +++ + ++    L  L +  V+ V HN  F+ +   +            +   
Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581

Query: 96  TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           T              G  + L++   +                     K       +   
Sbjct: 582 TMYGEYLLTGHEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626

Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199
           +  +   + +  EY   D+E T  +F K +    +           +  L    +   G 
Sbjct: 627 KETYEIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252
           + ++DL  +    +  +  +L   + +              +      L  + F      
Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------ 740

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281
              ++  T             A+  +  R
Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/444 (10%), Positives = 108/444 (24%), Gaps = 128/444 (28%)

Query: 256  MSEGTLKSILSHSNITQLAKDLILNRLA-----SSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              + T++ +            L  ++L           + + +       +DGRL     
Sbjct: 1004 KEKRTIEQLRKRHLDEATFVVLQRHKLEVAGLLLQKLQLERGSANFLHSGTDGRLSILHS 1063

Query: 311  FYGASRTGRWSGCV--------FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
                 +    +              QN+P+ ++S                          
Sbjct: 1064 DNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSS------------------------- 1098

Query: 363  CVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   ++  G+K   V  D + +E  V+A +  ++  +     G D +V   +      
Sbjct: 1099 -LRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGIS 1157

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             D++               GY+ G   F  +                         +  S
Sbjct: 1158 YDEIYN-------------GYKRGEAKFLKL---------------------RKVAKTFS 1183

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                     P       +     +   +    ++ G+ +  +            G     
Sbjct: 1184 FQRLYGAGVPLLHKTTGIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHF 1243

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                               + LP+  R+ Y               +          +   
Sbjct: 1244 I------------------VELPTGLRVCY---------------KTRDVVLNLPPVKNY 1270

Query: 601  IVQAISRDILCEGMK-NATK---------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCS 649
             +Q+   + L + M     +             ++  VHD +  +   +     V    +
Sbjct: 1271 PIQSFGAE-LAQMMIGRVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRT 1329

Query: 650  LMTKN--------PSWAKGLPLKA 665
            +M +         P     +PLK 
Sbjct: 1330 IMEEVDTYVAKTFPGVKLKVPLKV 1353


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
            gambiense DAL972]
          Length = 1404

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/444 (10%), Positives = 108/444 (24%), Gaps = 128/444 (28%)

Query: 256  MSEGTLKSILSHSNITQLAKDLILNRLA-----SSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              + T++ +            L  ++L           + + +       +DGRL     
Sbjct: 1004 KEKRTIEQLRKRHLDEATFVVLQRHKLEVAGLLLQKLQLERGSANFLHSGTDGRLSILHS 1063

Query: 311  FYGASRTGRWSGCV--------FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
                 +    +              QN+P+ ++S                          
Sbjct: 1064 DNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSS------------------------- 1098

Query: 363  CVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
             +R   ++  G+K   V  D + +E  V+A +  ++  +     G D +V   +      
Sbjct: 1099 -LRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGIS 1157

Query: 421  IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
             D++               GY+ G   F  +                         +  S
Sbjct: 1158 YDEIYN-------------GYKRGEAKFLKL---------------------RKVAKTFS 1183

Query: 481  HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540
                     P       +     +   +    ++ G+ +  +            G     
Sbjct: 1184 FQRLYGAGVPLLHKTTGIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHF 1243

Query: 541  RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600
                               + LP+  R+ Y               +          +   
Sbjct: 1244 I------------------VELPTGLRVCY---------------KTRDVVLNLPPVKNY 1270

Query: 601  IVQAISRDILCEGMK-NATK---------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCS 649
             +Q+   + L + M     +             ++  VHD +  +   +     V    +
Sbjct: 1271 PIQSFGAE-LAQMMIGRVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRT 1329

Query: 650  LMTKN--------PSWAKGLPLKA 665
            +M +         P     +PLK 
Sbjct: 1330 IMEEVDTYVAKTFPGVKLKVPLKV 1353


>gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 894

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 83/314 (26%), Gaps = 60/314 (19%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+  +A  G+ LV AD + IE R+LA ++                              +
Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           S   R   K +  A+ Y    +      S  G+++         +S    +   +S    
Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEV--KEATALRSSFLRHFAGVQSFITS 703

Query: 485 MQDQYPEFAVKDK-LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
                         L+G    +   A        ++L  +        + +G +    ++
Sbjct: 704 SLHHARRHGFITTGLLGRRRPISGLASND-----VRLRAEAERKVVNSIVQGSAADLIKM 758

Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
           A                     ++       G         +                  
Sbjct: 759 AMTMWGTYSHPPAAGANEQQKQKQPQPQQTGGAAGAATGTRAAATDAAPQLPPGCPPP-- 816

Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS----LMTKNPSWAK 659
                          +   D++ ++HDEI+ E  D     +  L +    LM      A 
Sbjct: 817 -------------LEEGCVDLIGSIHDEILFEC-DARPEVLQRLVAAVRCLMCGVV--AL 860

Query: 660 GLPLKAEGYEAKRY 673
            +PL  +    + +
Sbjct: 861 DVPLCVKLSVGQSW 874


>gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1]
 gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1]
          Length = 205

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIDAGQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            ++  + H   F+  +     G     +   CT + ++                      
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        Q   EY   DV     L   L    + 
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171

Query: 184 ERDLWLLDQTINDRGYR 200
           +      +        R
Sbjct: 172 DGRTKQAEACFKFLPTR 188


>gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 46/197 (23%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  LR+
Sbjct: 22  VAIDTETLGLNP----------HRDRLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  + H   F+  +     G  +  +   CT + +R                      
Sbjct: 72  RGITKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRL-----------------TRTY 112

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I     G   S     +            EY   DV     L   L      
Sbjct: 113 TDRHGLKDICFELLGVGLSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLAR 172

Query: 184 ERDLWLLDQTINDRGYR 200
           +      D        R
Sbjct: 173 DGRTKEADACFRFLPTR 189


>gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
 gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
          Length = 210

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L         V              L Q +  
Sbjct: 28  IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T++ V H + F+    +   GI+       CT + ++          LK+    L    
Sbjct: 78  KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 131

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      I                 +           Y   DV       ++LI +
Sbjct: 132 ---------EGIELDKTSQSSDWGNSANLSVAQL------SYAANDVRYLIPAKEKLITM 176

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              E    L +Q  N     + LD + + +++  
Sbjct: 177 LQREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209


>gi|260906871|ref|ZP_05915193.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brevibacterium linens BL2]
          Length = 613

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/472 (12%), Positives = 112/472 (23%), Gaps = 89/472 (18%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK-LQELIA---------QERKKLDEDIV 225
           RL  L   E    L+   +   G   D+    + L E +           +   + + + 
Sbjct: 174 RLRLLLAAESAGGLVAAEMQAAGVPWDIAEHDRILAEELGPRPARDAKPAKMLAVADQVR 233

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                   +      L   L    GI++   S+  L+      +       L+  +  S 
Sbjct: 234 AALGDPRANLDSHVKLLHSLHAA-GINVASTSKWELQE-----SNHAAIAPLLEYKKQSR 287

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
             +        +   S+GR R      G   TGRW+        +PR             
Sbjct: 288 LLS-ANGWAWLDEWVSEGRYRPVYVPGGV-VTGRWAASGGGALQIPR------------- 332

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  + A  G +L+ AD+A +E R LA ++G+    +A    
Sbjct: 333 -----------------QLRPALRADPGWRLISADVAQLEPRALAAMSGDRAMAEAGRGR 375

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +            T  +          K+  L   Y                        
Sbjct: 376 DLYSGLVDEGIVATRQE---------AKIAVLGAMYGSTTG----------------DSG 410

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW--KD 523
                    +  A        +      V    +G +  +  + WR       Q      
Sbjct: 411 RLVPRLRTSFPAAMGLVDSAAEVGAAGGVVSTWLGRSSPVPGEGWRRVQSAANQFDATPA 470

Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583
                     + G  +   V                      R      +        +A
Sbjct: 471 DENRARRAAGDQGRFTRNFVVQGTAAEWALAWLAD----LRLRLSQLPAIDDGNPGATSA 526

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
                   + G  +          D               +V  +HDE++  
Sbjct: 527 VDGDGGTTSAGETM------GHVAD----ASGPVFSRRAHLVFFLHDEVIVH 568


>gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 208

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 53/203 (26%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET          +     +  + +   +  D    +           +L   L D
Sbjct: 24  IAIDTET----------LGLIPRRDRLCVVQLSPGDGTADVIRIAPGQRQAPNLTALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            T   + H   F+  +   T G+   +    CT + +R      +           +   
Sbjct: 74  PTREKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASR-LSRTYT-----DRHGLKD--- 122

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                  L          +       A  +   QL  EY   DV     L  +L      
Sbjct: 123 ------NLKEMLDVDVSKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTARLVR 174

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           +  +            R  LDL+
Sbjct: 175 DGRMDHATACFEFLPTRAKLDLL 197


>gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 208

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            T   + H   F+  +   T G+   +    CT + +R          LK+         
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L          +       A  +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKEMLDIDISKTQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +               R  LDL+
Sbjct: 172 LIRDGRFDHATACFEFLPTRAKLDLL 197


>gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3]
 gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3]
          Length = 545

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/443 (10%), Positives = 106/443 (23%), Gaps = 111/443 (25%)

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +    M+E ++ ++        + + +  +R +        L  L E V  +GRL G+  
Sbjct: 190 LTTPKMTETSMDTVQGDLGKLVMQRMVWAHRRSL-------LQGLVEQVKPNGRLEGSAN 242

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
              A+ TGR    V    N+P                                +R     
Sbjct: 243 PC-ATPTGRMRHRVVV--NIP-----------------------AARSPFGPEIRGLF-- 274

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
                               W      +          +              V K +  
Sbjct: 275 ------------QGTPNAGEWKWTVLRRDIGENERVRPHTNIVEVLKGGKWKTVGKYRVY 322

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFS---------QNVKSTSTFEDWEQAESH 481
           + +   + +GY G     + +AS+ G                  + +     D  +   +
Sbjct: 323 VPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDGDVHTANQIAAGLPTRDDAKTFIY 382

Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541
                    +              +++ +   +  + +L + + +        G      
Sbjct: 383 AFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEAERGYLVG------ 436

Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601
                                   R+L     +     ++              K    +
Sbjct: 437 ---------------------LDGRKLTMRRSESGEVMVH--------------KALNTL 461

Query: 602 VQAISRDILCEGMK----NATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655
           +QA    ++   M        + G     VL +HDE   E       ++      M    
Sbjct: 462 LQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDIHDEGQWECHPEDLATLRGF---METCV 518

Query: 656 SWAKGL-----PLKAEGYEAKRY 673
             A  +     PL ++    + +
Sbjct: 519 KEAGEILGCNCPLASDSIAGRSW 541


>gi|322829429|gb|EFZ32820.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 1036

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 77/291 (26%), Gaps = 62/291 (21%)

Query: 2   SKLFIDIETRSP-------QPLPK------VGVWAYAEQAVITL------CAYAWDDEPV 42
             L +D+ET +         P  K       G   Y  +  +         A  +DD  V
Sbjct: 517 RYLVLDLETTTVRRYKRVANPFTKENYVVLSGARDYTGKVFMAGRYFSRNIALRYDDFEV 576

Query: 43  K-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDI--PSKRWICTSV 98
               D  + S+  S  L  L D  V+ V HN  F+   +++            +   T  
Sbjct: 577 TSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTMY 635

Query: 99  LART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                       G  + L++   +                             +   +  
Sbjct: 636 AEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKL---------------DAVKEAWAKGKET 680

Query: 152 HVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
           +   + L  EY   D+E           R L +R   +     D  L    +   G + +
Sbjct: 681 YEIPYALLSEYLHGDLENTELIFRKHMERALLQRQAIICTARMDGLLCTTEMEYNGLKTN 740

Query: 203 LDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLF 246
           + L +     +  +  +L   +                +      L  + F
Sbjct: 741 VQLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFF 791


>gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1579

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 104/405 (25%), Gaps = 88/405 (21%)

Query: 267  HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSS-DGRLRGTLQFYGASRTGR 319
             SN       +IL   A                 +   V S D  +   L  +  + TGR
Sbjct: 1201 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSMDSCIHHELI-HNKTNTGR 1259

Query: 320  WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--V 377
             +      QN+P++++S                           +R   I+  G K   +
Sbjct: 1260 LASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCI 1293

Query: 378  VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
             AD + +E   LA +A ++  ++   N  D +            D    +     K    
Sbjct: 1294 EADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAK---- 1346

Query: 438  ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
                                                   +  S            +    
Sbjct: 1347 -------------------------KNKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTG 1381

Query: 498  LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
            L      ++ +     ++GV    K +T           +     V NV      +    
Sbjct: 1382 LTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG--- 1434

Query: 558  VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617
            +  VL +  R V+++       L    +           L    VQ  + +I+ + M   
Sbjct: 1435 MFPVL-TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGV 1492

Query: 618  ----------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                            +  TVHD +  +   + Y  V      +M
Sbjct: 1493 LWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 87/329 (26%), Gaps = 74/329 (22%)

Query: 2   SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42
             L +D+ET +         P  K       G   Y     +         A  +DD  V
Sbjct: 466 RYLILDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPSV 525

Query: 43  ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95
                L +++ + ++    L  L +  V+ V HN  F+ +   +            +   
Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581

Query: 96  TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
           T              G  + L++   +                     K       +   
Sbjct: 582 TMYGEYLLTGQEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626

Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199
           +  +   +    EY   D+E T  +F K +    +           +  L    +   G 
Sbjct: 627 KETYEIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIIGCARMEGLLCTTEMEYNGL 686

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252
           + ++DL  +    +  +  +L   + +              +      L  + F      
Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRHLEESIPQEIPHDCRKFFNWSSNQHLITFFF------ 740

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281
              ++  T             A+  +  R
Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769


>gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5]
          Length = 1073

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 101/404 (25%), Gaps = 86/404 (21%)

Query: 267  HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320
             SN       +IL   A                 +   V S          +  + TGR 
Sbjct: 695  KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 754

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378
            +      QN+P++++S                           +R   I+  G K   + 
Sbjct: 755  ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 788

Query: 379  ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438
            AD + +E   LA +A ++  ++   N  D +            D    +     K +   
Sbjct: 789  ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAKKI--- 842

Query: 439  LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498
                                                  +  S            +    L
Sbjct: 843  --------------------------KEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 876

Query: 499  IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  ++ +     ++GV    K +T           +     V NV      +    +
Sbjct: 877  TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 929

Query: 559  HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617
              VL +  R V+++       L                L    VQ  + +I+ + M    
Sbjct: 930  FPVL-TGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 987

Query: 618  ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651
                           +  TVHD +  +   + Y  V      +M
Sbjct: 988  WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1031



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 62/245 (25%), Gaps = 47/245 (19%)

Query: 63  DETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLART-------NGLPSSLKNA 112
           DE  + V HN  F+ +   +            +   T              G  + L++ 
Sbjct: 40  DEYDVIVGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLEDV 99

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
             +                     K       +   +  +   + +  EY   D+E T  
Sbjct: 100 AKSYGGQT---------------MKLDAVKRAWAEGKETYEIPYSILTEYLHGDLENTEL 144

Query: 173 LF-KRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
           +F K +    +           +  L    +   G + ++DL  +    +  +  +L   
Sbjct: 145 IFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQ 204

Query: 224 IVK-------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
           + +              +      L  + F         ++  T             A+ 
Sbjct: 205 LEESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKLTLSTNARESKPLTGELFARH 258

Query: 277 LILNR 281
            +  R
Sbjct: 259 TLFLR 263


>gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771]
          Length = 208

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            T   + H   F+  +   T G+   +    CT + +R          LK+         
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L          +       A  +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKEMLDIDISKTQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +               R  LDL+
Sbjct: 172 LIRDGRFDHATACFEFLPTRAKLDLL 197


>gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 411

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 81/281 (28%), Gaps = 57/281 (20%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           RL  L   E    L+   +   G    +D+  +L E             ++  +L  ++ 
Sbjct: 171 RLQLLLAAESAASLVAAEMQHAGVPWRVDIHEQLLEDALGPRPTGMQRPEKMDRLLAELR 230

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                I  +      L   L    GI+                NI   A + +L     S
Sbjct: 231 AKLGAIGLNPDSPQDLMRALH-RAGIETKS------ARTWELQNIKHPAIEPLLAYKKLS 283

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                      +    DGR R      G   +GRW+        +P+             
Sbjct: 284 RLFSANGWAWLDQWVHDGRFRPEYV-VGGVASGRWASRGGGALQIPK------------- 329

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             VR  + A++G KL+VAD A +E RVLA +A +    +A  + 
Sbjct: 330 -----------------QVRGAVHANHGYKLIVADAAQLEPRVLAALAQDAKMAEAAQDH 372

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           +                      RA  KV  L   Y     
Sbjct: 373 DLYAGIAAQGFGG---------DRAKAKVALLGAIYGATTG 404


>gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 304

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 21/84 (25%), Gaps = 20/84 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53
              D ET S   +           A +   ++A +                         
Sbjct: 231 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 280

Query: 54  PSDLLQYLRDETVMCVAHNSLFER 77
              L   L DE V  V  N  ++R
Sbjct: 281 LELLKPLLEDEKVRKVGQNLKYDR 304


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+    +Q  + +   +  D    +      +     L   + D
Sbjct: 20  VAVDTET--------MGLHPERDQ--LCVVQLSAGDGNAHIVQLDRGTYNAPRLRALMAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             ++ + H + F+  + ++ LG+        CT + ++          LK+    L
Sbjct: 70  PAILKIFHFARFDVAMLQRYLGVVTAP--VYCTKIASKLVRTYTDRHGLKDLAREL 123


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 23/177 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    + +    +L + L D
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
             V+ + H + F+     KT G  +  +   CT + +R          LK+    L    
Sbjct: 70  PAVVKIFHFARFDLAALYKTFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               +    +   +      DS               L     + D    RE    L
Sbjct: 124 ----LGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDRLDTMLARENRTDL 176


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 50/201 (24%), Gaps = 37/201 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P              + +   +  D    +    +      +L + L D
Sbjct: 20  VAIDTETMGLVPARD----------RLCVVQLSSGDGDAHMVQIAQGQTEAPNLTRMLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKN-ACLALNFS 119
             V+ + H + F+    +   G  + +    CT + ++          LK      L   
Sbjct: 70  PKVLKLFHYARFDVAALENAFG--VRTAPIYCTKIASKLVRTYTDRHGLKALLSEVLGVD 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                            K    S     T +           Y   DV     L + L  
Sbjct: 128 ---------------VSKAQQSSDWGAPTLSAAQLD------YAASDVLYLHRLKEALDG 166

Query: 180 LSDGERDLWLLDQTINDRGYR 200
           +   E    L          R
Sbjct: 167 MLAREGRTELAQACFEFLPTR 187


>gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
 gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
          Length = 592

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 80/315 (25%), Gaps = 71/315 (22%)

Query: 196 DRGYRIDLDLVLKLQELI---------AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
             G  +D  +  ++              + R +   D            R    +   L 
Sbjct: 229 RTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLGRVDLRNPAQVLAALR 288

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              G D+ D     L+ +            L+  R A   +       L E V +DGRLR
Sbjct: 289 G-LGFDVPDTRAWRLERLREAHPG---VAALLAWRKAERLATTYGYRWLDEHVGADGRLR 344

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
           G      A+     +       NLP                                +R 
Sbjct: 345 GEWSGADAAAGRMTA--QAGLHNLP------------------------------SELRP 372

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            + A  G  LV ADL  +E RVLA ++G+   + A  + +             P+     
Sbjct: 373 AVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAATRDDDLYA----------PVAAALG 422

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   KV  LA  Y   +                             +  A  +    +
Sbjct: 423 VDRPTAKVAVLAAMYGQTSGA----------------AGEALRRMERAYPTALGYLRAAE 466

Query: 487 DQYPEFAVKDKLIGT 501
               E        G 
Sbjct: 467 LAGLEGRDVRTYGGR 481



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 4/120 (3%)

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586
                   G +  A R           + R   +     R +     +            
Sbjct: 434 AAMYGQTSGAAGEALRRMERAYPTALGYLRAAELAGLEGRDVRTYGGRLVRISDLAPAEP 493

Query: 587 LMRERTYGGKLTENIVQAISRDILCE--GMKNATKNGY--DIVLTVHDEIVSETPDTPYF 642
                  G      +VQ  + ++         A   G    IVL +HDE++   P     
Sbjct: 494 GAATAARGRFARNAVVQGAAAELFKAWAAAVRAGLAGSAGRIVLCLHDELLLHVPGPDAD 553


>gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686]
 gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
 gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
          Length = 205

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEADQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            ++  + H   F+  +     G     +   CT + ++                      
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        Q   EY   DV     L   L    + 
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171

Query: 184 ERDLWLLDQTINDRGYR 200
           +      +        R
Sbjct: 172 DGRTKQAEACFKFLPTR 188


>gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42]
 gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42]
          Length = 208

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKAAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            T   + H   F+  +   T G+        CT + +R          LK+         
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLCRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L          +       A  +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKEMLDVDVSKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +               R  LDL+
Sbjct: 172 LIRDGRFDHATACFAFLPTRAKLDLL 197


>gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 29/211 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET    P          ++  + L      +  V      +      +L Q L  
Sbjct: 27  LAVDTETMGLLP----------QRDRLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+ V H + F+    +  L I +      CT + ++     ++               
Sbjct: 77  TDVVKVFHFARFDLATLRHNLKIHVQP--VFCTKIASKLARTYTNRHGL----------- 123

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K L+    +  +D         N V        Y   DV     L ++L  +   
Sbjct: 124 -----KELVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQR 178

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           E    L  +  +     + LDL+ + +EL  
Sbjct: 179 EERWQLAQECFSFLPTLVSLDLL-QFKELFE 208


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 35/201 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET    P+             + +  ++  D    +      +    ++ + L 
Sbjct: 19  IVAIDTETMGLNPMRD----------RLCVIQFSSGDGNAHIVQIEPDAPQAPNICKILL 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D+  + + H + F+  + K    I+I      CT + ++          LKN        
Sbjct: 69  DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLRE---- 122

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                                 S     +     +  +   EY   DV    +L  +L  
Sbjct: 123 ----------------MLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNL 166

Query: 180 LSDGERDLWLLDQTINDRGYR 200
               E    + +   N    R
Sbjct: 167 NLKRENRYEIAEACFNFLPMR 187


>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
 gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 34/206 (16%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            +D ET        +G+    +   + L         V      +      +L Q +   
Sbjct: 26  AVDTET--------MGLLPRRD--RLCLVQLCDPLGQVTAIRIHKGQQEAPNLKQLMEAN 75

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSEH 121
           +++ V H + F+  + +  LGI +      CT +   LART      LK+  + L     
Sbjct: 76  SIVKVFHFARFDVAMLQHYLGIKVSP--IFCTKISSKLARTYTGKHGLKDLVMEL----- 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                          K  +D         N     +    Y   DV     + ++L  + 
Sbjct: 129 --------------EKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKIL 174

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
             E    L  Q        + LDL+ 
Sbjct: 175 KREERWELAQQCFECLPVFVGLDLLQ 200


>gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
 gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
          Length = 207

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 51/211 (24%), Gaps = 29/211 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET    P              + L         V             +L   L  
Sbjct: 25  LAIDTETMGLLPGRD----------RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H + F+    +  LGI++      CT + +                       
Sbjct: 75  ANILKVFHFARFDVATLRHNLGIEVNP--VFCTKIAS----------KLARTYTGKH--- 119

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K LI       +D         N     +    Y   DV        +LI +   
Sbjct: 120 ---GLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLIQMLKR 176

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           E    L           +    +++  ++  
Sbjct: 177 EERWDLALDCFQCLPTIV-TLDLMQFDDIFK 206


>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
 gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
          Length = 377

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 37/194 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D+E  S        +  Y E   + L   +   E   +            L     +
Sbjct: 35  LAFDLEADS--------LHHYTE--KVCLIQVSSASEDRLIDPLAPID--VKVLAPIFAN 82

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
             +  + H + ++     +  GI++       T + ++  G     L             
Sbjct: 83  PAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAAL---------- 130

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLS 181
                   L  RF                  + + Q   +Y  +D     EL+++L    
Sbjct: 131 --------LKKRFGVELDK---RYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAEL 179

Query: 182 DGERDLWLLDQTIN 195
             +  L  +++   
Sbjct: 180 KQKGRLAWVEEESE 193


>gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1]
 gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1]
          Length = 343

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 33/226 (14%)

Query: 3   KLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWDRTEQSAMPS 55
            L IDIET              +G+    ++  I      W  +P V   D ++   +  
Sbjct: 90  ILSIDIETSPIEGRVWGLWKQNLGLNQITKEWNILSYCAKWLGDPNVIYSDLSQAENIAD 149

Query: 56  ------DLLQYLRDETVMCVAHNSL-FERILFKKTL---GIDIP-SKRWICTSVLARTNG 104
                 +L + L +E  + VA N   F+    +      G   P   R I T ++A+   
Sbjct: 150 DSKLVAELYELL-NEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAK--- 205

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEY 162
                        F+ +  +    K    +  K              A + +AW+    Y
Sbjct: 206 ---------QQFGFTSNKLEWMTDKLCTTKKRKHEKFPGMELWNQCLAGNPEAWEEMRLY 256

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              DV +  EL+  L P   G  ++ + +        +     + +
Sbjct: 257 NIDDVISLEELYLILRPWYQGHPNVAVFNDGQEIACPKCGSHDLKR 302


>gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV]
 gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2]
 gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV]
 gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2]
          Length = 807

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/449 (11%), Positives = 119/449 (26%), Gaps = 83/449 (18%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293
             +    +  L L  G  +   S   LK++       + AK L+        ++   +  
Sbjct: 379 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 436

Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                        + + V  DG +  +L    A+ T R S      Q LP ++  +    
Sbjct: 437 TYNKDGTIKDTKGMLQYVDDDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 492

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKI 399
                             A   V+   ++  G    +   D   +E  +LA ++ +   +
Sbjct: 493 -----------------EAGSRVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLL 535

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                G D+++   A   N        +  AI K       +    +  K +        
Sbjct: 536 AKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPW-HGRMMQARKNI-------- 586

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            + ++            A          +       A     + 
Sbjct: 587 -----------------KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 629

Query: 520 LWKDLTEGFAC----VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
             + + +        + +    + A   + +      R  R      P      YS  + 
Sbjct: 630 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGG--TCYSFRQQ 687

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGY----DIVL 626
           +        + +  + T   ++     Q  +  ++   +         + G+     ++ 
Sbjct: 688 ERWDKEQRKTVMDFKDT---QIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLIN 744

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
            VHD + ++        V   +  +M   
Sbjct: 745 NVHDAVYTDCHKDTAAEVNKGVRDIMADA 773



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 70/275 (25%), Gaps = 44/275 (16%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           M+ +  +D+ET S       G  A        I +  +  D       D      +    
Sbjct: 1   MTTIRILDLETESH---EHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51

Query: 58  L--QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLAR 101
                  D            + VAHN++FE   F      + L       R  CT     
Sbjct: 52  RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111

Query: 102 TNG----LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                  L  +L                KM           +   D      +       
Sbjct: 112 LLSHQTWLYPALDELAPKYGGTHKVDGIKML--WDQGVLTSEMDQDLLSEYLSGPCGDIE 169

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQE 211
                 Y +      R ++   +   +           +   G ++DL++      K  E
Sbjct: 170 NTALVFYGQLMKLQARGMWAGYLERCEALIGF----SAMECAGLKVDLEVAKVNHAKQLE 225

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
            +A    +L + +    +         Y +  +L+
Sbjct: 226 EVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260


>gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19]
 gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19]
          Length = 807

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/449 (11%), Positives = 119/449 (26%), Gaps = 83/449 (18%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293
             +    +  L L  G  +   S   LK++       + AK L+        ++   +  
Sbjct: 379 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 436

Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                        + + V  DG +  +L    A+ T R S      Q LP ++  +    
Sbjct: 437 TYNKDGTIKDTKGMLQYVDDDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 492

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKI 399
                             A   V+   ++  G    +   D   +E  +LA ++ +   +
Sbjct: 493 -----------------EAGSRVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLL 535

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                G D+++   A   N        +  AI K       +    +  K +        
Sbjct: 536 AKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPW-HGRMMQARKNI-------- 586

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            + ++            A          +       A     + 
Sbjct: 587 -----------------KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 629

Query: 520 LWKDLTEGFAC----VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
             + + +        + +    + A   + +      R  R      P      YS  + 
Sbjct: 630 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGG--TCYSFRQQ 687

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGY----DIVL 626
           +        + +  + T   ++     Q  +  ++   +         + G+     ++ 
Sbjct: 688 ERWDKEQRKTVMDFKDT---QIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLIN 744

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
            VHD + ++        V   +  +M   
Sbjct: 745 NVHDAVYTDCHKDTAAEVNKGVRDIMADA 773



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 70/273 (25%), Gaps = 40/273 (14%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58
           M+ +  +D+ET S           +  +  I +  +  D       D      +      
Sbjct: 1   MTTIRILDLETES-YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRFRS 53

Query: 59  -QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN 103
                D            + VAHN++FE   F      + L       R  CT       
Sbjct: 54  RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113

Query: 104 G----LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                L  +L                KM           +   D      +         
Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVDGIKML--WDQGVLTSEMDQDLLSEYLSGPCGDIENT 171

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQELI 213
               Y +      R ++   +   +           +   G ++DL++      K  E +
Sbjct: 172 ALVFYGQLMKLQARGMWAGYLERCEALIGF----SAMECAGLKVDLEVAKVNHAKQLEEV 227

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           A    +L + +    +         Y +  +L+
Sbjct: 228 AGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 97/395 (24%), Gaps = 68/395 (17%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
              + L + + +       +        +  F   G+ +       +K +          
Sbjct: 194 ARLQALADQVAEAFGTPF-NPDSPQQ-IVKAFKSAGVPVASTRAHEIKKV------DHPG 245

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L     +          ++    D R R      G   +GRW+        +P+  
Sbjct: 246 VAPLLAYKEMARIYSFHGWVWADQWVRDHRFRPEYV-VGGVVSGRWATSGGGALQIPK-- 302

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G  LVVAD A +E RVLA +AG
Sbjct: 303 ----------------------------VMRQVVVADEGWTLVVADAAQLEPRVLAAMAG 334

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +    +A    +                     +R   K+  L+  Y G +     + + 
Sbjct: 335 DGGLARAAGQIDLYQALAQ----------AFGGERDSAKIAMLSAMYGGTSGDAPKLLAV 384

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-- 512
                             + + +A            E  +    +G  C      WR   
Sbjct: 385 M----------------RQRFPRAYQFVEDAARSGEEGKLVRSWLGRTCPQPSAGWRELV 428

Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572
                 +  +D        V +  +             +      +         +    
Sbjct: 429 SGPEGKRAARDRGRFTRNFVVQATAAEWALALMAVLRGLLPDPARLVFFQHDEVMVHCPA 488

Query: 573 VKGDCSYLNTATSQLMRER-TYGGKLTENIVQAIS 606
              +        +     R  +G       +QA++
Sbjct: 489 ELAEEVVAAVGRAAEEATRLLFGPTPVRFPMQAVA 523



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 16/157 (10%)

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                   ++A  Q                +  G S  A ++  V R    R  + V   
Sbjct: 340 RAAGQIDLYQALAQAFGGERDSAKIAMLSAMYGGTSGDAPKLLAVMRQRFPRAYQFVEDA 399

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQL---------MRERTYGGKLT-ENIVQAISRDILC 611
             S             +     ++            R     G+ T   +VQA + +   
Sbjct: 400 ARSGEEGKLVRSWLGRT-CPQPSAGWRELVSGPEGKRAARDRGRFTRNFVVQATAAEW-A 457

Query: 612 EGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSV 644
             +    +    +   +V   HDE++   P      V
Sbjct: 458 LALMAVLRGLLPDPARLVFFQHDEVMVHCPAELAEEV 494


>gi|316934310|ref|YP_004109292.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
 gi|315602024|gb|ADU44559.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
          Length = 694

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 116/461 (25%), Gaps = 81/461 (17%)

Query: 233 RSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L  +                  +L     T      ++  L       
Sbjct: 291 FNPSSRKHIIKKLKEMGWEPQEFTESGEAKVDDDVLEGLTDTFPQASKLVEYLLLDKRLG 350

Query: 290 LKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346
              +      + V  DG++ G +   G +   R S        +P  +       + +  
Sbjct: 351 QLADGDNAWLKKVHDDGKMHGAMDTMG-TVHSRASHFSPNMGQVPAAKSPYGAECRALFG 409

Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406
            N  +T     G   + +            V AD++G++ R LA        +     G 
Sbjct: 410 PNGIDTHTAGWGGEKEEI----------VQVGADMSGLQLRALAH------LLHPLDGGA 453

Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
              + T                                    + M    G +  +   + 
Sbjct: 454 YSDIVTSGDVH---------------------------WSHTQAMGLV-GPEEPRDKHSE 485

Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526
                 E   +   +        P+     +   T  +        K+      W  L +
Sbjct: 486 LHNILREKGAKTFGYSYLFGCFPPKSGRVVRDCLTTAK-------NKNPE----WGYLFD 534

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHI-VLPSSRRLVYSDVKGDCSYLNTATS 585
            F   +   G+I  R    V  +V +     + +  L +  +      K     L+    
Sbjct: 535 RFFKAMTTKGAIRIRSDKEVGTVVRKSFDERLKLGRLHAKLKACLKHYKNHLPGLD-DRL 593

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMK-----NATKNGYD------IVLTVHDEIVS 634
              R          + ++A    ILC+             GY       ++L VHDE   
Sbjct: 594 VPCRSEHSALNFACSSIEA----ILCKQWLCDSVSALEAKGYVWGRDFVLMLWVHDEQQI 649

Query: 635 ETPDTPYFSV-GTLCSLMTKN-PSWAKGLPLKAEGYEAKRY 673
               +    V  TL     +        +PL +E    + +
Sbjct: 650 ACRKSIAEEVGKTLVECAKQAGVKLGFRVPLASEYKIGRNW 690


>gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S]
 gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S]
          Length = 521

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 94/351 (26%), Gaps = 65/351 (18%)

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +++     ++ +++       +  + Q   +    F   GI+L    +     +L   + 
Sbjct: 184 DMLPVRLHQVTDEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRK----YLLREIDH 237

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              A + +L     +        T  +A     R R      G   +GRW+        +
Sbjct: 238 P--AVEPLLRYRDLAKLHAANGWTWLDAWVRGNRFRPVYVPGGV-VSGRWASRGGGALQI 294

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P+                               +R+ +IA  G   V+AD   +E R+LA
Sbjct: 295 PK------------------------------ALRTSVIADPGHTFVIADAGQLEPRILA 324

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+     A A  +D+Y    A+ F           RA  K+  L + Y   A     
Sbjct: 325 AMSGDPRM-TAAAGTDDLYALVAAEVFGGD--------RAKAKIAILGVLYGATAG---- 371

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                             T   + +  A               V    +G AC     +W
Sbjct: 372 ------------EARALLTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPSDSW 419

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +       +              ++                   V   
Sbjct: 420 W-SNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAAPGDGELVFFQ 469


>gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomonas phage gh-1]
 gi|29243578|gb|AAO73157.1|AF493143_18 putative DNA polymerase [Pseudomonas phage gh-1]
          Length = 709

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 79/278 (28%), Gaps = 57/278 (20%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR----DETVMCVA 70
            +   G+    ++          D    +        A   D ++ L         + V 
Sbjct: 5   DIETNGLLETVDKFHCATIQ---DWFTGQYTRF--NEATFGDYIKALEAEAAKPDGLIVF 59

Query: 71  HN-SLFERILF----KKTLG--IDIPSKRWICTSVLARTNGL------------------ 105
           HN   ++        ++  G  ++IP K+ + T VL R                      
Sbjct: 60  HNGIKYDIPALDKLKRQYFGKRLNIPRKKVLDTLVLVRLIHSNIRDRDAGLMRSGILPGK 119

Query: 106 ---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                SL+     L          +G+       +   D   Y       V   Q   +Y
Sbjct: 120 MFGSHSLEAWGYRLG-------EMKGEYKHDFMRQLEADGGVYTPGLEWAVCN-QAMEDY 171

Query: 163 CKRDVEATRELFKRLI------------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           C++DV  T +L ++L+                 E         +   G+  DL+   +L 
Sbjct: 172 CEQDVRVTSKLLRKLMEDSHYFVDGQAIECVRMEHAAAWTLAQMERNGFPFDLEGAERLY 231

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
             +A  R+ L   ++K      +    T   R  +   
Sbjct: 232 AELAGIRQDLLTKLIKTFGSWYQPKGGTEQFRHPVSDK 269


>gi|269975269|gb|ACZ55493.1| putative DNA polymerase [Staphylococcus phage SA1]
          Length = 910

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/452 (13%), Positives = 116/452 (25%), Gaps = 58/452 (12%)

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           ER  L     +    I  +          L          ++E +  +I           
Sbjct: 471 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 529

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +++R  +  ++          +  DGRL       GA   G  +G + Q         
Sbjct: 530 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 575

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                            +     +    +R      +G  ++  D    +  +L    G+
Sbjct: 576 ------------YGIVNVPSGAAVYGAPMREVWTCEDGTDIISVDQNSAQLVLLCNFMGD 623

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--------VSKEQRAIGKVMELALGYQGGAKV 447
           +   KA   G++    T  +                  K  R   +     +     A  
Sbjct: 624 EDFTKAVTEGKESVEFTKQEDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHT 683

Query: 448 FKT--MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----HHLWMQDQYPEFAVKDKLI- 499
             +     +   D+ +  +        E  +  +      + L       +FA   K   
Sbjct: 684 LNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKSKNGIYALLFGAGDEKFAKTIKASS 743

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                L K+ +  +   + +L   L E F    +    +  +  A      ++     + 
Sbjct: 744 TEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLW 803

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
              P    L Y+ +  +    N   +   RE T       N                   
Sbjct: 804 CKSPHKL-LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPA 848

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
            G   V + HDE+  E P      V  +   M
Sbjct: 849 IGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 880


>gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 355 DPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                    +R   +    +G  +   D + IE RVLA ++ +    +AF  G DI+  T
Sbjct: 5   PTRTEEGKQIRKAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHT 63

Query: 413 YAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
             K F+   +D+V+  Q    K +   + Y        
Sbjct: 64  AMKIFHLSSVDEVTSLQXRRAKAVNFGIVYGISDXGLS 101


>gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 206

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 46/197 (23%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  LR+
Sbjct: 22  VAIDTETLGLNP----------HRDRLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V  + H   F+  +     G  +  +   CT + +R                      
Sbjct: 72  RGVTKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRL-----------------TRTY 112

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I     G   S     +            EY   DV     L   L      
Sbjct: 113 TDRHGLKDICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAR 172

Query: 184 ERDLWLLDQTINDRGYR 200
           +      D        R
Sbjct: 173 DGRTKEADACFRFLPTR 189


>gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 521

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 94/351 (26%), Gaps = 65/351 (18%)

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
           +++     ++ +++       +  + Q   +    F   GI+L    +     +L   + 
Sbjct: 184 DMLPVRLHQVADEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRK----YLLREIDH 237

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
              A + +L     +        T  +A     R R      G   +GRW+        +
Sbjct: 238 P--AVEPLLRYRDLAKLHAANGWTWLDAWVRGNRFRPVYVPGGV-VSGRWASRGGGALQI 294

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P+                               +R+ ++A  G   V+AD   +E R+LA
Sbjct: 295 PK------------------------------ALRTSVVADPGHTFVIADAGQLEPRILA 324

Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450
            ++G+     A A  +D+Y    A+ F           RA  K+  L + Y   A     
Sbjct: 325 AMSGDPRM-TAAAGTDDLYALVAAEVFGGD--------RAKAKIAILGVLYGATAG---- 371

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                             T   + +  A               V    +G AC     +W
Sbjct: 372 ------------EARALLTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPSDSW 419

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
              +       +              ++                   V   
Sbjct: 420 W-SNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAAPGDGELVFFQ 469


>gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 259

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 42/213 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSD 56
            + ID ET        +G+  + +   + L   +  D    L          + +  P +
Sbjct: 70  IIAIDTET--------MGLNHHRD--RLCLIQISAGDGHAHLVQIVPERLGGKGADCP-N 118

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113
           L + L +   + + H + F+  + +  LGI +      CT + A+          LK+ C
Sbjct: 119 LKRLLSNPGCVKLMHYARFDVGILQNALGIAM--SNVKCTKIAAKLVRTFTDRHGLKDLC 176

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L                               +     +       Y   DV     L
Sbjct: 177 RDL------------------LGVEISKQ--QQSSDWGAPELTPEQMAYAASDVLYLHAL 216

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           + RL  L   E  L L +        R  LD +
Sbjct: 217 WNRLEGLLIREDRLALAEACFAFLPARARLDYL 249


>gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 214

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 63/216 (29%), Gaps = 44/216 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSDL 57
           + ID ET        +G+  + +   + L   +  D    L               P +L
Sbjct: 24  VAIDTET--------MGLNPHRD--RLCLVQLSAGDGEAHLVQIKPVSMGGRGYDCP-NL 72

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACL 114
              L D++V  + H + F+  + +    I IP    ICT + A    T      L   C 
Sbjct: 73  KALLTDDSVTKLMHFARFDVAVLQNAFNITIP--SVICTKIAARLVYTFTDRHGLAYLCR 130

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L   E                K    S     T             Y   DV     L+
Sbjct: 131 DLLGVEIS--------------KHQQSSDWGAQTLTPDQL------RYAASDVLYLHALW 170

Query: 175 KRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLK 208
            +L  +   +  RDL            R+DL    +
Sbjct: 171 DKLEAMLIRENRRDLAQACYDFLPARCRLDLMGYEE 206


>gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 209

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 28/204 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D ET    P          ++  + L      +  V      +      +L Q L  
Sbjct: 27  LAVDTETMGLVP----------QRDRLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+ V H + F+    +  L I +      CT + ++     ++               
Sbjct: 77  THVVKVFHFARFDLATLRHNLKIYVQP--VFCTKIASKLARTYTNRHGL----------- 123

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K L+    +  +D         N V        Y   DV     L ++L  +   
Sbjct: 124 -----KELVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQR 178

Query: 184 ERDLWLLDQTINDRGYRIDLDLVL 207
           E    L+ +  +     + LDL+ 
Sbjct: 179 EERWQLVQECFSFLPTLVSLDLLQ 202


>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
 gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
          Length = 377

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 37/194 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D+E  S        +  Y E   + L   +   E   +            L     +
Sbjct: 35  LAFDLEADS--------LHHYTE--KVCLIQVSSTSEDRLIDPLAPID--VKVLAPIFAN 82

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
             +  + H + ++     +  GI++       T + ++  G     L             
Sbjct: 83  PAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAAL---------- 130

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLS 181
                   L  RF                  + + Q   +Y  +D     EL+++L    
Sbjct: 131 --------LKKRFGVELDK---RYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAEL 179

Query: 182 DGERDLWLLDQTIN 195
             +  L  +++   
Sbjct: 180 KQKGRLAWVEEESE 193


>gi|228907509|ref|ZP_04071366.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
 gi|228852001|gb|EEM96798.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
          Length = 464

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/380 (10%), Positives = 96/380 (25%), Gaps = 67/380 (17%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------SAMPSDL 57
            +       G   + +   I      + D                              L
Sbjct: 86  YTFIDTKSTGFNPFKDS--IISITIGFMDNCFFYIPIKPFKHGLSQHISTLSLEYTMKKL 143

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLA 115
              L  +  + +  NS             DI    +  T + A          +K     
Sbjct: 144 SPLLE-KDTLLILSNSKQHIHALYNWCDFDITYNIFWDTEIAANLLNENHPKGVKEWYKE 202

Query: 116 LNF------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                       L  ++  K +I +     +            +   +   EY KR  E 
Sbjct: 203 YVLPRLISNETILNTIDRKKYMIEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFEN 262

Query: 170 -TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQERKKLDEDI--- 224
               L        + E  L  +  T   +G +I  + +   +++++  + + + ++I   
Sbjct: 263 PKFNLGPIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQTKFQSVKKEILNY 322

Query: 225 ----------------------VKLTDGIIRSSRQTYALRMYLF------------LITG 250
                                        + +      L   L+              + 
Sbjct: 323 LGSTITLNNCMHPPKQQNKYKGANKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKSC 382

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGT 308
             ++   +   K+++ + +   +   ++  R      +    ++L +    + D ++   
Sbjct: 383 KSVISKLKTDRKTLIRNLSKHPVIPLILEYRRLVKLISS-FCDSLPKEQQGTIDNKIHPI 441

Query: 309 LQFYGASRTGRWSGCVFQPQ 328
               G ++TGR S      +
Sbjct: 442 YNSVG-TKTGRMSCSSPNLK 460


>gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1]
 gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1]
          Length = 723

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 80/297 (26%), Gaps = 65/297 (21%)

Query: 7   DIETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           DIET            GV   AE         A    P+              + +    
Sbjct: 11  DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGI-VGGFKEYVHKVEEIAAS 65

Query: 64  ETVMCVAHN-SLFERIL---FKK-TLG--IDIPSKRWICTSVLARTN-------GLPS-- 107
              M V HN   ++       K+   G   + P  + I T VL R          + +  
Sbjct: 66  PDGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125

Query: 108 ------------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                       SL+     L          +G+       K   +   Y       +  
Sbjct: 126 AGRLPPQMMGRQSLEAWGYRLG-------EMKGEYKHDYVAKCKAEGIEYKAGDE-WLFP 177

Query: 156 WQLFGEYCKRDVEATRELFKRLIPL----------------SDGERDLWLLDQTINDRGY 199
            Q   +Y  +DV  T  LFK+ +                     E D       +   GY
Sbjct: 178 SQEMLDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGY 237

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGIDLVD 255
            ++ ++V  L   +  +R +L + +         S       + +     TG DL  
Sbjct: 238 PMNTEMVEGLYRELTVKRAELLDKLR----STFGSWYAPKGGKEFFRHPRTGKDLPK 290



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 100/476 (21%), Gaps = 128/476 (26%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMS-------EGTLKSILSHSNITQLAKDLILNRLASS 285
            +      L   L       +           + TL+ +       Q   +L+   L   
Sbjct: 339 FNPGSGDHLAKVLMERGWEPVDFTDTGKPVVDDETLEHVKLPDAEAQDCVELVREYLVVQ 398

Query: 286 GSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                         + V  DGR+ G++   GA  TGR +        +P          +
Sbjct: 399 KRIGQAAEGKNAWLKLVGPDGRMHGSINPCGA-VTGRATHSSPNMAQVPANGAPYGETCR 457

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV-----LAWIAGEDW 397
                   +                    +    V  D +G+E R        +  GE  
Sbjct: 458 GAFGAAWNKKDGK---------------PDPWIQVGVDASGLELRCLGNRAAPFDGGEYA 502

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASH 454
           K     +           A N   DK + E    R   K    A  Y  G          
Sbjct: 503 KTVVEGDIHWANAVNAGLAPNVKRDKSNHEHEAFRNNAKTFIYAFLYGAG---------- 552

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                               +  +           + K +    
Sbjct: 553 ----------------------------------AAKIGLIVGGGKKEGAALMKKFIEGT 578

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +  L           V       ++ V     +  +R      +     RR+      
Sbjct: 579 PAIKDL--------REAVSNTLISDSKWVDGENIVKWKRR----WLRGLDGRRIHIRSPH 626

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIV----- 625
                                     ++Q     +    +        + GY I      
Sbjct: 627 S---------------------ALNALLQGDGAVVCKHWIVETERMLEEAGY-IHGWEGD 664

Query: 626 ----LTVHDEIVSETPDTP-YFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYR 674
                 VHDE+            V  +  L M K   +      L  EG     ++
Sbjct: 665 FAYMAWVHDELQIACRTQEIAEEVVKIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 105/362 (29%), Gaps = 76/362 (20%)

Query: 155 AWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213
              L   Y ++       +   R+  L+  E    L+   +   G     +   ++   +
Sbjct: 135 LADLAEVYAEQLRRHENAVHPGRMRLLTASESAGALVAAEMTAAGLPWRAETHREVLREL 194

Query: 214 A----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
                      +   +L +++       +R       +R   F   GI +       L+ 
Sbjct: 195 LGERYGGSGEPRRLAELADEVSAAFGHRVRPELPAEVVRA--FARAGIKVTSTRRWELEK 252

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           I         A   +L         +            DGR R +    G + +GRW+  
Sbjct: 253 I------DHPAVAPLLAHKKLYRIWVAHGWQWLADWVRDGRFRPSY-LPGGTVSGRWATN 305

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                 +P+                               +R  ++A  G +LVVAD   
Sbjct: 306 GGGALQIPK------------------------------VIRRAVVADPGWRLVVADADQ 335

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E R+LA ++G+   ++  +  +D+Y     +AF    D        + K+  L   Y  
Sbjct: 336 LEPRILAAVSGDRALMEVASRPDDLYQAVSDRAFQGDRD--------LAKLAVLGAVYGQ 387

Query: 444 GAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            +    K +A+                     +  A  H         E  +    +G  
Sbjct: 388 TSGDGLKNLAAL-----------------RRRFPAAVDHVDEAARAGEEGRLVRTWLGRT 430

Query: 503 CE 504
           C 
Sbjct: 431 CP 432


>gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 210

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 34/207 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D ET    P          ++  + +   A     V L   +        L Q L 
Sbjct: 26  YLAVDTETMGLIP----------QRDRLCVVQIANSAGEVVLLRLSRGVKQAPFLAQLLM 75

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
             ++  + H + F+  + +  LGI        CT + ++          LK+    L   
Sbjct: 76  APSIEKIFHYARFDLAMLRYHLGIRAWP--VFCTKIASKLARTYTSKHGLKDVVSEL--- 130

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                           C   ++                   EY   DV     +  +L  
Sbjct: 131 ----------------CGVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAE 174

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLV 206
           +   E    L  Q        ++LDL+
Sbjct: 175 MLRREERWELAQQCFQHLPTLVELDLL 201


>gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus
           fuscus/P1/IT/USA/2009]
          Length = 713

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 64/259 (24%), Gaps = 68/259 (26%)

Query: 7   DIETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDLLQ 59
           DIET            GV   A                  +   T            L  
Sbjct: 6   DIETDGLLDTVSQFHCGVMINAGTRETLKYG---------VIPMTGIVGGFKEYVEKLEA 56

Query: 60  YLRDETVMCVAHN-SLFERILFK----KTLG--IDIPSKRWICTSVLART---------N 103
                  M V HN   ++    K    K  G  ++    + + T VL+R           
Sbjct: 57  ISASPDGMVVFHNGINYDIPAIKILKKKYFGKNLNFNKAKMVDTLVLSRLMFANLKDKDL 116

Query: 104 GL------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           GL              SL+     L   +   K                    Y      
Sbjct: 117 GLIRSGKLAGKFWGRHSLEAWGYRLGEMKGEYKD-------DFKAMCKEKGIEYKAGDE- 168

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLI----------------PLSDGERDLWLLDQTIN 195
            +   Q   +Y  +DV  T +LF+R +                     E +   +   + 
Sbjct: 169 WLTPSQEMLDYNVQDVVVTLKLFERFLTDKYYFPEGETNWEAIESIKLEHEAQWVCSKME 228

Query: 196 DRGYRIDLDLVLKLQELIA 214
             G+  D++ + K+   + 
Sbjct: 229 RNGFPTDVEALEKMYHDLQ 247



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/452 (11%), Positives = 97/452 (21%), Gaps = 125/452 (27%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASS 285
            +      L   L            +        TL+ +     + Q   +L+   L   
Sbjct: 336 FNPNSNDHLIKVLTDRGWEPTEFTDKGNPKCDDETLEYVKLKDPVAQHCLELVRKYLVIQ 395

Query: 286 GSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                         + V SDGR+ G++   GA  TGR +        +P   +      +
Sbjct: 396 KLIAQAAEGKQAWLKNVKSDGRVHGSINPCGA-VTGRATHSSPNMAQVPANGKLHGETCR 454

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA-----GEDW 397
                +  +                    +    V  D +G+E R L   A     GE  
Sbjct: 455 GAFGAHHNKKDGK---------------PDPWIQVGVDASGLELRCLGHFAAPYDGGEYA 499

Query: 398 KIKAFANGEDIYVTTYAKAFNTPI---DKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     +           A N P    D      R   K    A  Y  G          
Sbjct: 500 ENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAG---------- 549

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514
                                               +            + + K +    
Sbjct: 550 ----------------------------------AAKIGSIVGGHAKEGKELTKKFMEGT 575

Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574
             +  L            +EG + +           M+   +   +     R++      
Sbjct: 576 PAIKSL------------REGIASALVSSEKWVDGEMQVKWKRRWLKGLDGRKVHVRSPH 623

Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD------- 623
                                     ++Q+    I  + +    K     GY        
Sbjct: 624 S---------------------ALNTLLQSAGALICKKWIVEVEKAMIAAGYKHGWDGDF 662

Query: 624 -IVLTVHDEIVSETPDTPYFS--VGTLCSLMT 652
             +  VHDE+             V     +M 
Sbjct: 663 AYMAWVHDELQIACRTQEIAEHCVQIAQDVMR 694


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 40/205 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDLL 58
           + ID ET        +G+    +   + L   +  D               + A   +L 
Sbjct: 29  VAIDTET--------MGLDPRRD--RLCLVQLSAGDGNAHCVQIIPESLGGRGADCPNLK 78

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA 115
             L    V+ + H + F+  + +  LGI+       CT + A+          LK+ C  
Sbjct: 79  ALLTRPDVVKLFHFARFDVAILRAALGIECAP--VRCTKIAAKLVRTFTDRHGLKDLCRE 136

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L                               +     +       Y   DV     L+ 
Sbjct: 137 L------------------LGVEISKQ--QQSSDWGAPELTPEQLAYAASDVLHLHALWA 176

Query: 176 RLIPLSDGERDLWLLDQTINDRGYR 200
           +L  L   E  L L +        R
Sbjct: 177 KLEGLLRREGRLELAESCFRFLPAR 201


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L+  L D
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVTLLED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
           +T+  + H   F+  +   T G  +      CT + +   RT      LK  C  L
Sbjct: 72  KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKLTRTYTDRHGLKEICSEL 125


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E         +G+    +   + L   +  D    L            L   L D
Sbjct: 21  IAIDTE--------SMGLVNRRD--RLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLLVD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H + F+  + +  LG  + ++   CT + +R         SLK  CL      
Sbjct: 71  PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELCL------ 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L                   +     +    Y   DV     + + L  +
Sbjct: 123 ----DLLGVRLNK---------GKQSSDWGSTSLTREQM-SYAASDVLYLHAIKEALDVM 168

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E+ + L         YR +LDL+
Sbjct: 169 LKREKRIELARACFQFLPYRAELDLL 194


>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
 gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
          Length = 207

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 50/201 (24%), Gaps = 35/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET     +             + +   +  D    +    +      ++   L D
Sbjct: 20  VAIDTETLGLNTMRD----------RLCVVQLSPGDGTADVVQIAKGQTEAPNISALLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
            +   + H + F+        G         CT + +R          LK+    L    
Sbjct: 70  ASKTKIFHYARFDVAALYHAFGAMTEG--IFCTKIASRLTRTYTDRHGLKDLAREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L  +              + +          Y   DV    ++   L   
Sbjct: 124 ------VGVDLSKQQQSSDWAVETLSPAQLD----------YAASDVLYLHDIMGALYKR 167

Query: 181 SDGERDLWLLDQTINDRGYRI 201
            + E  + L  +       R+
Sbjct: 168 LEREDRMDLARECFRFLPMRV 188


>gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 73/237 (30%), Gaps = 51/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       RS      G KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSGEHPH 208


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
            Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
            strain Friedlin]
          Length = 1429

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 92/379 (24%), Gaps = 108/379 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               +  DGR+        A+ T R        QN+P+ ++S                   
Sbjct: 1061 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1101

Query: 356  PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    VR   ++  G K   V  D + +E  VLA +  +        +G D +V   
Sbjct: 1102 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTNDLNSGVDFHVKRA 1153

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A     P D++ +             GY+     +  +                      
Sbjct: 1154 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1179

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
               +  S         P       +     E   +    ++ G+ Q  + +         
Sbjct: 1180 RTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1239

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
             G   S                      +P+  R+                 +       
Sbjct: 1240 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1266

Query: 594  GGKLTENIVQAISRDILCEGMK-NATKN---------GYDIVLTVHDEIVSETPDTPY-F 642
               +    +Q    + L + M     ++            ++  VHD +  +        
Sbjct: 1267 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRKDFYDDRAFLINFVHDSVWMDCHVDVLRE 1325

Query: 643  SVGTLCSLMTKNPSWAKGL 661
             V   C ++     +   +
Sbjct: 1326 CVRDTCRILGSVHEYVPKV 1344


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 35/204 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + L  ++  +    L     Q     +L   L D
Sbjct: 20  IAVDTET--------MGLNIHRD--KLCLLQFSNGNGAAHLVHFINQDYTAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT + ++          LK+ C  L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                   Y  T    ++      EY  +DV    +L   L  +
Sbjct: 128 IS----------------KQQQSSYWGTDNLSLEQ----KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
              E  L L  +       R++LD
Sbjct: 168 LFRENRLELAHEIFRFLPTRVNLD 191


>gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2]
 gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2]
          Length = 204

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 35/184 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P              + L   +  D    L           +L + L D
Sbjct: 20  VAIDTETMGLVPGRD----------RLCLVQLSRGDGSADLVQIAPAQTAAPNLTRLLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V  + H + F+  +  KT G  + +    CT + ++          LK+    L    
Sbjct: 70  PAVEKLFHFARFDIAVLYKTFG--VMTGPIYCTKIASKLARTYTDRHGLKDLARELL--- 124

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      I    +        D          +    Y   DV     L  +L  +
Sbjct: 125 ----------GIELSKQQQSSDWGGD-------ILSEAQLAYAASDVLHLHALRTKLDAM 167

Query: 181 SDGE 184
            + E
Sbjct: 168 LERE 171


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 36/221 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  + +D E         +G+    +   + L   +++D    L         P +L + 
Sbjct: 19  IKSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQFKNDYTAP-NLRKI 67

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALN 117
           L D+ +  + H + F+  +    L     +    CT + +R         SLK  CL L 
Sbjct: 68  LEDKNITKIFHFARFDVSIIHYYL--QTWALPCYCTKIASRLVRTYTDNHSLKELCLEL- 124

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                                   +     +   +         Y   DV    ++ ++L
Sbjct: 125 -------------------LDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKL 165

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218
             + + E    L ++       RI+LD +      I     
Sbjct: 166 DLMLERENRKELAEKCFEFLPTRIELDSMGWGSVDIFNHHM 206


>gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 37/182 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D    L     +S    +L   L D
Sbjct: 23  IAIDTET--------MGLNPHRD--RLCLVQLSGGDGTAHLVKFDGKSYDAPNLKALLAD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNA-CLALNFS 119
              + + H + F+  + +  LG+        CT + ++          LK+     L   
Sbjct: 73  PKSLKIFHFARFDVAVLEHYLGVVTSP--IYCTKIASKLARTYTDRHGLKDLVGEILGIE 130

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                            K    S       ++  +       Y   DV     L  RL  
Sbjct: 131 ---------------ISKQQQSSDWGAAELSDSQR------SYAANDVLHLHALKTRLDE 169

Query: 180 LS 181
           + 
Sbjct: 170 ML 171


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 36/197 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L  ++  +    L   T Q     +L   L D
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT + ++          LK+ C  L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                        +      D+   +              EY  +DV    +L   L  +
Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDR 197
              E   + L Q I   
Sbjct: 168 LLKENR-YELAQDIFHF 183


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 34/203 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D ET        +G+  + +   + L      +  V      +      +L + +
Sbjct: 29  KEVAVDTET--------MGLNPHRD--RLCLVQICDPEGNVTALRIAKGQEEAPNLTRLM 78

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNF 118
            D  +  + H + F+    K T   DI +    CT + +   RT      L         
Sbjct: 79  EDPGITKIFHFARFDTAQLKHTF--DIKTYPIFCTKIASKIARTYTSHHGL--------- 127

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                     K L+       +D         N     +    Y   DV     L  +L 
Sbjct: 128 ----------KTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLE 177

Query: 179 PLSDGERDLWLLDQTINDRGYRI 201
            +   E  L L  +        +
Sbjct: 178 KMLAREDRLRLAQRCFECLPVMV 200


>gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
          Length = 205

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
            ++  + H   F+  +  +  G     +   CT + +   RT      LK  C  L    
Sbjct: 71  RSITKIFHFGRFDLAVLAQAFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNEL---- 124

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T +          EY   DV     L   L   
Sbjct: 125 ----------LDVSISKQQQSSDWAAETLSAAQL------EYAASDVLYLHRLKAVLEQR 168

Query: 181 SDGERDLWLLDQTINDRGYR 200
            + +      +        R
Sbjct: 169 LERDGRAKQAEACFKFLPTR 188


>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
 gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
          Length = 380

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 15/115 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E          G+ AY EQ  I L  ++       +      +   S L +   
Sbjct: 30  QIAVDTE--------SNGLHAYQEQ--ICLIQFSVPGADYLVDPLASVN--LSGLNEIFS 77

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
           +  +  V H + ++ +  K+  G          T + AR  G     L       
Sbjct: 78  NPGIEKVFHAAEYDILCLKRDFGFTF--THLFDTMIAARILGRSEVGLAALLEEH 130


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L+  L D
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQLSPGDGTADIIQIAKGQNSAPNLVTLLED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
           +T+  + H   F+  +   T G  +      CT + +   RT      LK  C  L
Sbjct: 72  KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKLTRTYTDRHGLKEICSEL 125


>gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 49/224 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
               +   L    +   +     +    + +L   +I +    +I   L     A  +++
Sbjct: 61  SRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA-AQID 117

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +       DGR+ G +   GA  TGR +        +P                      
Sbjct: 118 SWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNMAQVP---------------------- 153

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                      RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 -SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHGPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L++ L D
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQISPGDGTADIIQIAKGQKNAPNLVKLLED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
             V  + H   F+  +   T G  +  +   CT + +   RT      LK  C  L
Sbjct: 72  NAVTKIFHFGRFDLAILAHTFG--VMPEAVFCTKIASKLTRTYTDRHGLKEICNEL 125


>gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2]
 gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2]
          Length = 704

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/472 (11%), Positives = 93/472 (19%), Gaps = 140/472 (29%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGS 287
                 ++  L     +      +         L+ +       Q   DLI   L     
Sbjct: 336 PSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKR 395

Query: 288 AILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                         V  DG++ G +   GA  TGR +        +P             
Sbjct: 396 IGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVP------------- 441

Query: 345 QALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIAGED 396
                            +  RS          I          D +G+E R LA      
Sbjct: 442 ----------GVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF---- 487

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             +  F NGE               +      R   K       Y  G +          
Sbjct: 488 --MARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                                                          + +KK +      
Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561

Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576
           +  L + + +            S  + +       +   +   I     R++        
Sbjct: 562 IAALREAIQQ------------SLVKSSAWIGAEQKVQWKRRWIKGLDGRKVHVRSPHA- 608

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD--------I 624
                                   ++Q+    I    +        + G           
Sbjct: 609 --------------------ALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDGDFAY 648

Query: 625 VLTVHDEIVSETPDTPYFS--VGTLCSLMTKNPS-WAKGLPLKAEGYEAKRY 673
           +  VHDEI             + T    M      WA    L  EG     +
Sbjct: 649 MAWVHDEIQVACRTEHIAQIVIDTAQEAMRWVGEHWAFRCRLDTEGKMGPNW 700



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 63/243 (25%), Gaps = 66/243 (27%)

Query: 67  MCVAHNS-LFERILFKK------TLGIDIPSKRWICTSVLARTNGL-------------- 105
           + V HN   ++    +K           +P +  I T VL+R                  
Sbjct: 55  LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114

Query: 106 -------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    +L+     L   +   K +        F     +        A  V   + 
Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDD--------FKAMLEEQGEEYVDGAEWVSFNEP 166

Query: 159 FGEYCKRDVEATRELFKRLIPLS-------------------------DGERDLWLLDQT 193
              Y  +DV  T +L ++ +                            D E     L   
Sbjct: 167 MMAYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAK 226

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGID 252
               G+  +   + +L   +A +R +L + + +       S  Q    +       TG  
Sbjct: 227 QERNGFPFNTKAIEELYVELAAKRAELLQKLTE----TFGSWYQPKGGKELFKHPRTGKP 282

Query: 253 LVD 255
           L  
Sbjct: 283 LPS 285


>gi|162456960|ref|YP_001619327.1| pseudogene [Sorangium cellulosum 'So ce 56']
 gi|161167542|emb|CAN98847.1| pseudogene [Sorangium cellulosum 'So ce 56']
          Length = 101

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 614 MKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYE 669
           M    +    G  +VLTVHDE+  E P          +   M         +PL  +   
Sbjct: 1   MVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFP--LDVPLVVDVGH 58

Query: 670 AKRY 673
              +
Sbjct: 59  GPTW 62


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 52/200 (26%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L + L D
Sbjct: 20  VAIDTETLGLNP----------HRDRLCVVQLSNGDGTADVVQIPAGHTDAPNLKKLLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V  + H + F+  + +   G+        CT + ++          LK+    L   E
Sbjct: 70  PMVTKLFHFARFDIAVLEHAFGVMTQP--IYCTKIASKLVRTYTDRHGLKDLVRELLGVE 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                           K    S       +           Y   DV     L ++L  +
Sbjct: 128 IS--------------KQQQSSDWGAEKLSEAQLT------YAASDVLHLHALREKLDTM 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
              E  + L          R
Sbjct: 168 LARENRMDLAKSCFEFLPTR 187


>gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
 gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
          Length = 205

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + +   +  D    +    +  +   ++   L+D
Sbjct: 20  VAIDTET--------LGLDTRRD--RLCVVQLSPGDGTADVVQIAKGQSEAPNITALLKD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
                + H + F+        G+        CT + +R          LK+         
Sbjct: 70  PAKTKIFHYARFDVAALYHAFGVMTDG--IFCTKIASRLTRTYTDRHGLKDLARE----- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +        Q   EY   DV    ++   L   
Sbjct: 123 ---------------MVGVDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKR 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
            + E  + L          R
Sbjct: 168 LEREDRMELAKACFTFLPTR 187


>gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 571

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 70/501 (13%), Positives = 130/501 (25%), Gaps = 144/501 (28%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   ++  G     D+  ++ + +           +   +L +++ 
Sbjct: 158 RMRLLTAAESAGMLVAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVS 217

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       L+   F   G+ L       L+       I   A   +L      
Sbjct: 218 AAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELE------GIDHPAVPPLLEYKKLY 269

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +       +    DGR R   Q  GA  +GRW+        +P+             
Sbjct: 270 RIWVAHGWGWLQDWVRDGRFRPAYQPGGA-VSGRWTTLGGGALQIPK------------- 315

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD+  +E RVLA ++ +   ++  A+ 
Sbjct: 316 -----------------VIRRAVVADAGWRLVVADVDQMEPRVLAAVSRDPGLMEVAAHE 358

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D+Y     +AF+   +          K+  L   Y              G  L+  +  
Sbjct: 359 DDLYTRLSDRAFSGDRE--------QAKLALLGAVY----------GQTSGDGLKNLAAL 400

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                        R +    +       
Sbjct: 401 ---------------------------------------------RRRFPAAVAY----V 411

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +  A   +EG  +        PR V R    +  I   +             +   T   
Sbjct: 412 DEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGY 471

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK----------------NGYDIVLTVH 629
                R  G      +VQ                                   ++V   H
Sbjct: 472 ASSDARARGRFTRNFVVQGS------------AADWALLLLAAVRQALVGMRAELVFFQH 519

Query: 630 DEIVSETPDTPYFSVGTLCSL 650
           DE++   P     +V      
Sbjct: 520 DEVIVHCPADEADAVVEAVRQ 540


>gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 562

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 70/501 (13%), Positives = 130/501 (25%), Gaps = 144/501 (28%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   ++  G     D+  ++ + +           +   +L +++ 
Sbjct: 149 RMRLLTAAESAGMLVAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVS 208

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       L+   F   G+ L       L+       I   A   +L      
Sbjct: 209 AAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELE------GIDHPAVPPLLEYKKLY 260

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              +       +    DGR R   Q  GA  +GRW+        +P+             
Sbjct: 261 RIWVAHGWGWLQDWVRDGRFRPAYQPGGA-VSGRWTTLGGGALQIPK------------- 306

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD+  +E RVLA ++ +   ++  A+ 
Sbjct: 307 -----------------VIRRAVVADAGWRLVVADVDQMEPRVLAAVSRDPGLMEVAAHE 349

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +D+Y     +AF+   +          K+  L   Y              G  L+  +  
Sbjct: 350 DDLYTRLSDRAFSGDRE--------QAKLALLGAVY----------GQTSGDGLKNLAAL 391

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
                                                        R +    +       
Sbjct: 392 ---------------------------------------------RRRFPAAVAY----V 402

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           +  A   +EG  +        PR V R    +  I   +             +   T   
Sbjct: 403 DEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGY 462

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK----------------NGYDIVLTVH 629
                R  G      +VQ                                   ++V   H
Sbjct: 463 ASSDARARGRFTRNFVVQGS------------AADWALLLLAAVRQALVGMRAELVFFQH 510

Query: 630 DEIVSETPDTPYFSVGTLCSL 650
           DE++   P     +V      
Sbjct: 511 DEVIVHCPADEADAVVEAVRQ 531


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E         +G+    +   + L   +  D    L            L   + D
Sbjct: 31  IAVDTE--------SMGLVNRRD--RLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLIVD 80

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H + F+  + +  LG  + ++   CT + +R         SLK  C       
Sbjct: 81  PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELC------- 131

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L                +        +    Y   DV     + + L  +
Sbjct: 132 ---SDLLGVRLNK----------GKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVM 178

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E+ + L         YR +LDL+
Sbjct: 179 LKREKRIELAQACFQFLPYRAELDLL 204


>gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T]
          Length = 62

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           MK    NGY +V+  HDE+++E P+  + SV  + +LMT+   W    P++A G++  RY
Sbjct: 1   MKKCENNGYPVVMHTHDELIAEVPED-FGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59

Query: 674 RK 675
           +K
Sbjct: 60  QK 61


>gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 208

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            T   + H   F+  +   T    + +    CT + +R                      
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTF--SVTTTPVFCTKIASRLI-----------------RTY 114

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G     +       S     +     +      EY   DV     L  +L      
Sbjct: 115 TDRHGLKDNLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIR 174

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           +               R  LDL+
Sbjct: 175 DGRYDHATACFEFLPTRAKLDLL 197


>gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1417

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 81/329 (24%), Gaps = 106/329 (32%)

Query: 327  PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADLAGI 384
             QN+P+ ++S                           +R   ++  G+K   V  D + +
Sbjct: 1100 CQNIPKDDKSP--------------------------IRRLFVSRFGEKGRCVELDYSQL 1133

Query: 385  EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            E  VLA + G+   +     G D ++   +     P D++ K             GY+ G
Sbjct: 1134 EIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYK-------------GYKRG 1180

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               +  +                         +  S         P       +     E
Sbjct: 1181 IPEYVQL---------------------RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1219

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
               +    ++ G++Q  + +          G                        + LP+
Sbjct: 1220 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFV------------------VELPT 1261

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--------- 615
              R+ +               +          +    +Q    + L + M          
Sbjct: 1262 GIRMSF---------------KTRDVVLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVR 1305

Query: 616  -NATKNGYDIVLTVHDEIVSETPDTPYFS 643
             +       +V  VHD +  +        
Sbjct: 1306 RDFYGQKAFMVNFVHDSLWLDCHLDVLEE 1334


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 81/329 (24%), Gaps = 106/329 (32%)

Query: 327  PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADLAGI 384
             QN+P+ ++S                           +R   ++  G+K   V  D + +
Sbjct: 1156 CQNIPKDDKSP--------------------------IRRLFVSRFGEKGRCVELDYSQL 1189

Query: 385  EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            E  VLA + G+   +     G D ++   +     P D++ K             GY+ G
Sbjct: 1190 EIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYK-------------GYKRG 1236

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               +  +                         +  S         P       +     E
Sbjct: 1237 IPEYVQL---------------------RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1275

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
               +    ++ G++Q  + +          G                        + LP+
Sbjct: 1276 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFV------------------VELPT 1317

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--------- 615
              R+ +               +          +    +Q    + L + M          
Sbjct: 1318 GIRMSF---------------KTRDVVLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVR 1361

Query: 616  -NATKNGYDIVLTVHDEIVSETPDTPYFS 643
             +       +V  VHD +  +        
Sbjct: 1362 RDFYGQKAFMVNFVHDSLWLDCHLDVLEE 1390


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 36/197 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L  ++  +    L   T Q     ++   L D
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT + ++          LK+ C  L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                        +      D+   +              EY  +DV    +L   L  +
Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDR 197
              E   + L Q I   
Sbjct: 168 LLKENR-YELAQDIFRF 183


>gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L+D
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
            ++  + H   F+  +   T G     +   CT + +   RT      LK  C  L    
Sbjct: 71  RSITKIFHFGRFDLAVLAHTFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNEL---- 124

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T +          EY   DV     L   L   
Sbjct: 125 ----------LDVSISKQQQSSDWAAETLSAAQL------EYAASDVLYLHRLKAVLEQR 168

Query: 181 SDGERDLWLLDQTINDRGYR 200
            + +      +        R
Sbjct: 169 LERDGRAKQAEACFKFLPTR 188


>gi|213420856|ref|ZP_03353922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 72

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 9/70 (12%)

Query: 611 CEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663
              M               +++ VHDE+V E       +V   +  LM         +PL
Sbjct: 1   KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPL 58

Query: 664 KAEGYEAKRY 673
             E    + +
Sbjct: 59  LVEVGSGENW 68


>gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 36/197 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET        +G+  + +   + L  ++  +    L   T Q     ++   L D
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT + ++          LK+ C  L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                        +      D+   +              EY  +DV    +L   L  +
Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDR 197
              E   + L Q I   
Sbjct: 168 LLKENR-YELAQDIFRF 183


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET   +P+             + +  ++  D    L           +L + L D
Sbjct: 20  VAIDSETMGLRPIRD----------RLCVVQFSSGDGTAHLVQFAPGEYDAPNLTRMLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H + F+  + +  LG  + +    CT + ++          LK+ C  L
Sbjct: 70  PDVLKLFHFARFDVAVLQAFLG--VATAPIYCTKIASKLVRTYTDRHGLKDLCREL 123


>gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 200

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 523

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 106/333 (31%), Gaps = 52/333 (15%)

Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-------FLITG 250
           G+ ID++L+ +   +    R     ++         +     A+  +L           G
Sbjct: 158 GHPIDVELLNRELAMADAHRVAAIAELGIDLTDSATARGS-KAIHAWLAPVGVFLVDAKG 216

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
              +        SI          K     R  +S   + KL  +  A++ +GR   TL 
Sbjct: 217 APSLSRDLYDRVSIPETDEAQSRWKKFREVRSVASR--VGKLREIQRALN-NGRTHSTL- 272

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
           +   +RTGR +      QN+ R                               +R  ++A
Sbjct: 273 YVRRARTGRGAVTGPALQNIHRG------------------------------LRPLLMA 302

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK----VSK 426
             G+ LV  D + +E RV A ++ +   + A  +G+        + +    D      + 
Sbjct: 303 PVGEVLVSLDFSQMEPRVSAGLSQDPDLLAALESGDLYAE-LSRRIWGAEADDADGKPNP 361

Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486
             R   K + L + Y  G            L ++     V   S +  +   +++ LW+Q
Sbjct: 362 LLRDRAKTLMLGIFYGEGKNAL-----GRALGIEPKDAKVLLDSVWAAFPGLQAYDLWLQ 416

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            +           G    L K+   A     +Q
Sbjct: 417 SEVRAGRPAFTQDGRPVPLPKRGLHAALNNRVQ 449


>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
 gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
          Length = 377

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 37/194 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D+E  S        +  Y E   + L   + + E   +            L     +
Sbjct: 35  LAFDLEADS--------LHHYTE--KVCLIQVSSESENRLIDPLAPID--VRVLAPIFAN 82

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
             +  + H + ++     +  GI++       T + ++  G     L             
Sbjct: 83  PAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAAL---------- 130

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLS 181
                   L  RF                  + + Q   EY  +D     EL+++L    
Sbjct: 131 --------LKKRFGVELDK---RYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAEL 179

Query: 182 DGERDLWLLDQTIN 195
             +  L  +++   
Sbjct: 180 LAKGRLAWVEEESE 193


>gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
 gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
          Length = 211

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 29/211 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E         +G+  + +   + L                +   +  +L     D
Sbjct: 29  IAIDTE--------AMGLNFHRD--RLCLVQLCDSAGITTCVRIAQGQTVAPNLQALCED 78

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  V H + F+    K  LGI +      CT + ++      S               
Sbjct: 79  PQITKVFHFARFDITALKHGLGIAVQP--IFCTKIASK-LARTYS-----SQHGL----- 125

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K+L+       +D         N          Y   DV        +L  +   
Sbjct: 126 -----KSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQR 180

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           E   W L Q             + +   +  
Sbjct: 181 EGR-WQLAQDCFACLPTFAALDLAQFGSVFE 210


>gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 204

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 37/212 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET        +G+  + +   + L   +  D    L            L + L
Sbjct: 18  RSVAVDTET--------LGLLPHRD--RLCLVQLSGGDGQAHLVQIKPGQTHAPHLERLL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNF 118
            D  V  + H + F+  +  KT G    +    CT + +   RT      LK+    L  
Sbjct: 68  IDPNVTKLFHYARFDIAVLYKTFG--TMTTPLYCTKIASKLTRTYTDRHGLKDLAREL-- 123

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       L     K    S     T ++          Y   DV     L  +L 
Sbjct: 124 ------------LGVDLSKQQQSSDWGADTLSDAQLT------YAASDVLHLHALRTKLD 165

Query: 179 PLSDGER--DLWLLDQTINDRGYRIDLDLVLK 208
            + + E   +L            ++DL    +
Sbjct: 166 GMLEREHRTELAQACFDFLPTRAKLDLAGWAE 197


>gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
 gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
          Length = 208

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 56/206 (27%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L++ L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVRMLAD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
                + H   F+  +   T G+   S    CT + +R          LK+         
Sbjct: 74  PARQKIFHFGRFDIAVLFHTFGVT--STPVFCTKIASRLTRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L                  A+ +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKELLDVDISKQQQSSDWAADILSPAQL--EYAASDVLHLHALRDKLTAR 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +  +   D        R  LDL+
Sbjct: 172 LIRDGRMEHADACFAFLPTRAKLDLL 197


>gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 546

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 122/516 (23%), Gaps = 118/516 (22%)

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
           D         + +              +A      RL  L   E    L+   ++  G  
Sbjct: 104 DLDDASPGPYDGLDPAAELRAQEAAVADA--RDPGRLRFLLAAESAGALVAAELHHTGLP 161

Query: 201 IDLDLVLKLQEL-------IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT---G 250
              D+   +            Q   +L+   V++ + +             L       G
Sbjct: 162 WRADVHDAILTQRLGPRPPFGQRPARLEALAVRIRELLDAPPTLNPDSHPSLLKALQYAG 221

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           I +  +S+  L  +           + ++     S           +    DGR R    
Sbjct: 222 IGVRSLSQWELMEV------QHPVVEPLMEYKKLSRLLTANGWNWLDTWVRDGRFRSEYV 275

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
             G   TGRWS        LP+                               VR  ++A
Sbjct: 276 -VGGVVTGRWSSVGGGALQLPK------------------------------EVRRAVVA 304

Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
             G  LVVAD+A +E RVLA ++ +D    A               +   +   +   R 
Sbjct: 305 DPGWTLVVADVAQLEPRVLAAMSRDDAMAAAGRG---------GDMYAGIVASGAVATRD 355

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
           + KV  L   Y G       +                       + +A +          
Sbjct: 356 LAKVGMLGAMYGGTTGASAQVLPSL----------------ARTFPRAIALVEDAARAGE 399

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
              V    +G         W     G                +      +        +V
Sbjct: 400 RGEVVSTWLGRGSPRPGADWERAQAGAYD--------ADDGARARSYTRSFGRFTRNFVV 451

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610
                      L S+RR +++               L    T  G               
Sbjct: 452 QGTAAEWALAWLASARRRLWA---------------LGEHGTGDGVFANRP--------- 487

Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646
                        +   +HDE+V  TP      V  
Sbjct: 488 ------------HLAFFLHDEVVVHTPAAMADDVAR 511


>gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
 gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
          Length = 592

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 66/259 (25%), Gaps = 62/259 (23%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   G+++ +     L+ +         A  L+L                 EA   DGR 
Sbjct: 263 FARAGVEVPNTRSWVLRGV------DHPAAPLVLEYKELYRIWTAHGWAWQEAWVRDGRF 316

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R      G   +GRW+        +P+                               +R
Sbjct: 317 RPEYVPAGV-VSGRWATRGGGALQIPK------------------------------VIR 345

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             ++A  G   VVAD   +E R+LA ++G+     A   G+                   
Sbjct: 346 RAVVADPGWTFVVADAGQLEPRILAAVSGDTRLAAAARAGDLYAALADDAFGG------- 398

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              RA  KV  L   Y                     S          ++  A  +    
Sbjct: 399 --DRARAKVALLGAMYGQTGG----------------SAAPALEVLRRNYPAAFGYVETA 440

Query: 486 QDQYPEFAVKDKLIGTACE 504
                   +    +G  C 
Sbjct: 441 ARSGEAGELVRSWLGRTCP 459



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 45/215 (20%), Gaps = 41/215 (19%)

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
             A   +           + +   ++   +             + +           G +
Sbjct: 359 ADAGQLEPRILAAVSGDTRLAAAARAGDLYAALADDAFGGDRARAKVALLGAMYGQTGGS 418

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                +  R  +           E  A   + G  + +      P   + R   D    +
Sbjct: 419 AAPALEVLRRNYPAAFGY----VETAARSGEAGELVRSWLGRTCPPGSVDRVGED---TV 471

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC--EGMKNATKN 620
           P+                        R R  G      ++QA + +              
Sbjct: 472 PAG----------------GEEGPSARARARGRFTRNFVIQATAAEWAATLLATLRGELA 515

Query: 621 G----------------YDIVLTVHDEIVSETPDT 639
           G                 ++V   HDE++      
Sbjct: 516 GSDAELVGSDVGLAGSDAELVFFQHDEVIVHCRTE 550


>gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L++ L D
Sbjct: 22  VAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLAD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
           + +  + H   F+  +   T GI        CT + +   RT      LK  C  L
Sbjct: 72  KAITKIFHFGRFDLAILAHTFGI--MPDAVFCTKIASKLTRTYTDRHGLKEICSEL 125


>gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12]
 gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12]
          Length = 384

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 56/253 (22%), Gaps = 51/253 (20%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGS 287
                 ++  L     +      +         L+ +       Q   DLI   L     
Sbjct: 16  PSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKR 75

Query: 288 AILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                         V  DG++ G +   GA  TGR +        +P             
Sbjct: 76  IGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVP------------- 121

Query: 345 QALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIAGED 396
                            +  RS          I          D +G+E R LA      
Sbjct: 122 ----------GVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF---- 167

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             +  F NGE               +      R   K       Y  G +         G
Sbjct: 168 --MARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI---GQIVG 222

Query: 457 LDLQQFSQNVKST 469
              ++  +  K  
Sbjct: 223 AGKERGKELKKKF 235


>gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 209

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 34/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + L         V      +       L Q + +
Sbjct: 27  IAVDTET--------MGLIPHRD--RLCLVQLCDPTGYVTAIRIAKGQKEAPKLKQLMEN 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
              + V H + F+    +  LGI+  +    CT + ++          LK+    L    
Sbjct: 77  NHSIKVFHFARFDVAQLRHHLGIE--TTPIFCTKIASKLARTYTSSHGLKSL--VLELEG 132

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                              +D         N     +    Y   DV     L ++LI +
Sbjct: 133 I-----------------ELDKTAQSSDWGNAANLSEEQLSYAANDVRYLLGLKQKLITM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E    L           + LDL+
Sbjct: 176 LQREDRWQLAQDCFQCLPVIVSLDLL 201


>gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77]
 gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77]
          Length = 808

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/449 (11%), Positives = 119/449 (26%), Gaps = 83/449 (18%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293
             +    +  L L  G  +   S   LK++       + AK L+        ++   +  
Sbjct: 380 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 437

Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341
                        + + V  DG +  +L    A+ T R S      Q LP ++  +    
Sbjct: 438 TYNKDGTIKDTKGMLQYVDDDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 493

Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKI 399
                             A   V+   ++  G    +   D   +E  +LA ++ +   +
Sbjct: 494 -----------------EAGSRVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLL 536

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
                G D+++   A   N        +  AI K       +    +  K +        
Sbjct: 537 AKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPW-HGRMMQARKNI-------- 587

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
                            + ++            A          +       A     + 
Sbjct: 588 -----------------KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 630

Query: 520 LWKDLTEGFAC----VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
             + + +        + +    + A   + +      R  R      P      YS  + 
Sbjct: 631 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGG--TCYSFRQQ 688

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGY----DIVL 626
           +        + +  + T   ++     Q  +  ++   +         + G+     ++ 
Sbjct: 689 ERWDKEQRKTVMDFKDT---QIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLIN 745

Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKN 654
            VHD + ++        V   +  +M   
Sbjct: 746 NVHDAVYTDCHKDTAAEVNNGVRDIMADA 774



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 70/273 (25%), Gaps = 40/273 (14%)

Query: 1   MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58
           M+ +  +D+ET S           +  +  I +  +  D       D      +      
Sbjct: 1   MTTIRILDLETES-YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRFRS 53

Query: 59  -QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN 103
                D            + VAHN++FE   F      + L       R  CT       
Sbjct: 54  RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113

Query: 104 G----LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                L  +L                KM           +   D      +         
Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVDGIKML--WDQGVLTSEMDQDLLSEYLSGPCGDIENT 171

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQELI 213
               Y +      R ++   +   +           +   G ++DL++      K  E +
Sbjct: 172 ALVFYGQLMKLQARGMWAGYLERCEALIGF----SAMECAGLKVDLEVAKVNHAKQLEEV 227

Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246
           A    +L + +    +         Y +  +L+
Sbjct: 228 AGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260


>gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142]
 gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142]
          Length = 214

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 28/203 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID ET    P          ++  + L         V      +      +L Q L
Sbjct: 30  KAIAIDTETMGLIP----------QRDRLCLVQLCDPSGYVTAIRIEKGQQTAENLKQLL 79

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ ++ + H + F+   FK    I+       CT V +                  S  
Sbjct: 80  ENQNIIKIFHYARFDVAQFKYNFAIETEP--IFCTKVAS----------KLARTYTGSH- 126

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  KAL+       +D         N     +    Y   DV     L ++LI + 
Sbjct: 127 -----GLKALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITML 181

Query: 182 DGERDLWLLDQTINDRGYRIDLD 204
             E    L  + +      ++LD
Sbjct: 182 QREERWELAQKCMKVIPLFVELD 204


>gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32]
 gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32]
          Length = 704

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 62/263 (23%), Gaps = 51/263 (19%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAK----DL 277
               + ++ +      + + L     I        +      +L H  +    K    DL
Sbjct: 326 YTPVEHVVFNPSSRDHIALKLKEAGWIPTEFTDKGAPKVDDEVLEHVRVDDPEKQRCIDL 385

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V  DG++ G++   GA  TGR +        +P   
Sbjct: 386 IKEYLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVP--- 441

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS---NG-----KKLVVADLAGIEA 386
                                      +  R+   A    +G           D +G+E 
Sbjct: 442 --------------------GVRSPYGEPCRAAFGAEHHLDGLTGLPWVQAGIDASGLEL 481

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  +  G    V                  R   K       Y  G +
Sbjct: 482 RCLAHF------MSKYDGGAYADVILNGDIHTVNQQAAELPTRDNAKTFIYGFLYGAGDE 535

Query: 447 VFKTMASHCGLDLQQFSQNVKST 469
                    G   ++  +  K  
Sbjct: 536 KI---GQIVGAGKERGKELKKKF 555



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 66/254 (25%), Gaps = 67/254 (26%)

Query: 58  LQYLRDE---TVMCVAHNS-LFERILFKKTLG------IDIPSKRWICTSVLARTNGL-- 105
           L  L  E     + V HN   ++  +  K           +P +  + T VL+R      
Sbjct: 43  LDALEAEVARGGLIVFHNGHKYDAPVLTKLAKLQLNREFHLPRENVVDTLVLSRLLFANI 102

Query: 106 -------------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                                +L+     L   +   K +  K L         +     
Sbjct: 103 KDSDMALLRSGKLPGKRFGSHALEAWGYRLGEMKGEYKDDFKKLL--------EEQGEDY 154

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI-------------------------PLS 181
              A  +   +   +Y  +DV  T+ L ++L+                            
Sbjct: 155 VEGAEWISFNEPMMDYNVQDVVVTKALLEKLLSDKHYFPAGIDFTDVGATTFWSESCEAV 214

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
             E     L       G+  +   + +L   +A  R +L + +        +    T   
Sbjct: 215 WLEHRAAWLLAKQERNGFPFNTKAIEELYVELAGRRSELLQTLTDTFGTWYQPKGGTELF 274

Query: 242 RMYLFLITGIDLVD 255
              L   TG  L  
Sbjct: 275 ---LHPRTGKPLGK 285


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1404

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 81/329 (24%), Gaps = 106/329 (32%)

Query: 327  PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADLAGI 384
             QN+P+ ++S                           +R   ++  G+K   V  D + +
Sbjct: 1087 CQNIPKDDKSP--------------------------IRRLFVSRFGEKGRCVELDYSQL 1120

Query: 385  EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            E  VLA + G+   +     G D ++   +     P D++ K             GY+ G
Sbjct: 1121 EIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYK-------------GYKRG 1167

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               +  +                         +  S         P       +     E
Sbjct: 1168 IPEYVQL---------------------RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1206

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
               +    ++ G++Q  + +          G                        + LP+
Sbjct: 1207 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFV------------------VELPT 1248

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--------- 615
              R+ +               +          +    +Q    + L + M          
Sbjct: 1249 GIRISF---------------KTRDVVLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVR 1292

Query: 616  -NATKNGYDIVLTVHDEIVSETPDTPYFS 643
             +       +V  VHD +  +        
Sbjct: 1293 RDFYGQKAFMVNFVHDSLWLDCHLDVLEE 1321


>gi|197935875|ref|YP_002213711.1| hypothetical protein RSB1_gp22 [Ralstonia phage RSB1]
 gi|197927038|dbj|BAG70380.1| hypothetical protein [Ralstonia phage RSB1]
          Length = 264

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 36/201 (17%)

Query: 2   SKLFIDIET-------RSPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTE---- 49
             L IDIET               V +     +  I      W   + V   D       
Sbjct: 5   KILTIDIETSPIGAHVWRLFD-ENVALNQITAEWTILSFCAKWLGSDEVIYEDTFNQRNK 63

Query: 50  --QSAMPSDLLQYLRDETVMCVAHNS-LFER-ILFKKTLGIDI---PSKRWICTSVLART 102
                +   + + L DE  + +  N   F+R  +  + +   +      R + T ++AR 
Sbjct: 64  RDDKRIVKRIHKLL-DEADIVIGQNVQKFDRRKINARFIMNGLTPPSPYRVVDTMLMAR- 121

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---HVQAWQLF 159
                          F+ +  +    K             P ++   A    + +A +  
Sbjct: 122 -----------KTFGFTSNKLEWLSEKLCTQYKKLKHKKFPGFELWAAFLAGNPEAQEEM 170

Query: 160 GEYCKRDVEATRELFKRLIPL 180
            EY   DV +T EL+ +L P 
Sbjct: 171 REYNIVDVRSTEELYLKLRPW 191


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +       +   +L + L D
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPVGHSDAPNLKKLLGD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNAC-LALNFS 119
             +  + H + F+       LG  +  +   CT + +R          LK+     L   
Sbjct: 70  PAITKIFHFARFDLAALYNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREVLGVD 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     +   +       S               L G   + D    RE    L
Sbjct: 128 L---------SKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTEL 176


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 94/379 (24%), Gaps = 108/379 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               +  DGR+        A+ T R        QN+P+ ++S                   
Sbjct: 1061 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1101

Query: 356  PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    VR   ++  G K   V  D + +E  VLA +  +    K   +G D +V   
Sbjct: 1102 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRA 1153

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A     P D++ +             GY+     +  +                      
Sbjct: 1154 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1179

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
               +  S         P       +     E   +    ++ G+ Q  + +         
Sbjct: 1180 KTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1239

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
             G   S                      +P+  R+                 +       
Sbjct: 1240 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1266

Query: 594  GGKLTENIVQAISRDILCEGMK----------NATKNGYDIVLTVHDEIVSETPDTPY-F 642
               +    +Q    + L + M           +  K+   ++  VHD +  +        
Sbjct: 1267 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRKDFYKDRAFLINFVHDSVWMDCHVDVLRE 1325

Query: 643  SVGTLCSLMTKNPSWAKGL 661
             V   C ++     +   +
Sbjct: 1326 CVTDTCRILGSVHEYVPKV 1344


>gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 51/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + ++  E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQTTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       RS      G KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSGEHPH 208


>gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106]
 gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106]
          Length = 208

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D ET        +G+  + +   + L         V      +       L + L 
Sbjct: 24  RLAVDTET--------MGLLPWRD--RLCLVQLCDPKGQVTAVKIAKDQTEAPHLKKLLE 73

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
               + V H + F+       L ID+      CT + ++     +               
Sbjct: 74  ASNTLKVFHFARFDMATLLYYLDIDVNP--VFCTKIASKLARTYTGRHGL---------- 121

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 K L+    +  +D         N     +    Y   DV     + ++L+ + +
Sbjct: 122 ------KELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLE 175

Query: 183 GERDL 187
            E  L
Sbjct: 176 REERL 180


>gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
 gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
          Length = 204

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + L   +  +    L           +L   L +
Sbjct: 20  VAIDTETLGLNP----------HRDRLCLVQLSGGNGDADLVRIAPGQTRAPNLEALLAN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+  +  KT G  + ++   CT + ++          LK+    L   E
Sbjct: 70  PNVLKLFHFGRFDIAVMAKTFG--VMAEPVYCTKIASKLIRTYTDRHGLKDLVRELLGVE 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      D+               L     K DV   RE
Sbjct: 128 IS--------KQQQSSDWGADTLSDAQLSYAASDVLYLHALREKLDVMLARE 171


>gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2]
          Length = 701

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 78/248 (31%), Gaps = 35/248 (14%)

Query: 6   IDIET-----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLL 58
            DIET      S  P  +  V +               D     + R          + L
Sbjct: 12  FDIETDGLMEYSVIPGAETTVVSKVH-------CIVIHDYHANWYRRYRSDQPGAIEEAL 64

Query: 59  QYLRDETVMCVAHN-SLFERILFKKTLG-IDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           + L D   + VAHN   ++  + +       +  +R + T VL+R          N    
Sbjct: 65  KVLMDSD-LLVAHNGIKYDIPVLELLYPWFKLDKRRVLDTLVLSRLLFADIKDRDNV--L 121

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELF 174
           L   +   K+    +L A   +       Y     N   +      EYC++DV  TR++F
Sbjct: 122 LRKGQLPGKLYGSHSLKAWGYRVGEAKGEYGEGEGNVWAELNDDMVEYCEQDVRVTRKVF 181

Query: 175 KRLIPLS--------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             ++  +                E D   +       G+  D      L   +A +R+ +
Sbjct: 182 DLMVQNTYYFSDDMTQLQYAVRLEHDAAWVLAQQERNGFPFDERGAAALYAELAGKRQTI 241

Query: 221 DEDIVKLT 228
            + ++   
Sbjct: 242 LDKVMATF 249



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 39/257 (15%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-------VDMSEGTLKSILSH 267
            + + + +      + ++ +      +   L     +           + E TL     +
Sbjct: 293 AKIEYVKDRPYTPIEHVVFNPGSRQHIAKVLQERGWVPTEFTETGLPKVDEETLAEAAEN 352

Query: 268 SNITQ-LAKDLILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
                     LI   L                 +  +  G + G++   GA  TGR +  
Sbjct: 353 LPEQYRDDVKLIAEYLLLVKRLGQIAEGDNAWLKLCNK-GFIHGSVNPNGA-VTGRATHA 410

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
                 +P          + +  +                +R  ++       V  D +G
Sbjct: 411 FPNLAQVPSGTALYGPQCRALFGVEH--------------IRKTVVGWAAAVQVGTDASG 456

Query: 384 IEARVLAWIA---GEDWKIKAFANGED---------IYVTTYAKAFNTPIDKVSKEQRAI 431
           +E R L        +   I+    G+          +      +    P  +   + R  
Sbjct: 457 LELRCLGHFMARFDDGQYIRDILEGDIHWVNVEALGLVPKGTKRIKEGPGHEEHDKFRGY 516

Query: 432 GKVMELALGYQGGAKVF 448
            K    A  Y  G +  
Sbjct: 517 AKTFIYAFLYGAGDEKI 533


>gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
 gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 29/196 (14%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
            ID ET        +G+  + +   + +   +  D    +           +L + L D 
Sbjct: 23  AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQHDAPNLKKLLGDP 72

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            ++ + H + F+        G  +  +   CT + +R      +               K
Sbjct: 73  AIVKIFHFARFDLAALHNAFG--VMPRPVYCTKIASR-LTRTYT-----DRHGL-----K 119

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
               +AL     K    S       ++   A      Y   DV     L  +L  +   E
Sbjct: 120 DLVREALSIDLSKQQQSSDWGSLALSDAQLA------YAASDVLHLHALRDKLDAMLARE 173

Query: 185 RDLWLLDQTINDRGYR 200
               L          R
Sbjct: 174 DRTGLAQACFEFLPAR 189


>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
 gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
          Length = 381

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 33/193 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +  D+E  S        +  Y E   + L  +A       +         P  L     
Sbjct: 29  IVACDLEADS--------MHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFA 76

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  +  V H + ++     +  GI++       T +  +  G              +  L
Sbjct: 77  NAAIRKVFHGADYDIRSLHRDFGIEVN--NLFDTMIACQLLGE--------REFGLAAQL 126

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            K         RF         Y     +         EY  +D     EL+++L+   +
Sbjct: 127 RK---------RFGVELDKQ--YQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELE 175

Query: 183 GERDLWLLDQTIN 195
            +     +++   
Sbjct: 176 EKGRRGWVEEECE 188


>gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 103

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 26/106 (24%)

Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           L      D ++  T    G + TGR S      QN+P                       
Sbjct: 1   LLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP----------------------- 36

Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399
                    +R   IAS     L+  D + IE R+LA  + +   +
Sbjct: 37  -VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 81


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 41/207 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L  ++  +    L     Q     +L   L D
Sbjct: 20  IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYSAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL---N 117
           +T   + H + F+    KK L ID+  +   CT + ++          LK+ C  L   N
Sbjct: 70  KTRCKIFHFARFDLAAIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLSIN 127

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            S+       G                                EY  +DV    +L   L
Sbjct: 128 ISKQQQSSYWG-----------------------TDNLSSEQKEYAAKDVLYLHQLKDIL 164

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD 204
             +   E  L L          R +LD
Sbjct: 165 QKMLLRENRLELAQDIFRFLPTRANLD 191


>gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843]
 gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843]
          Length = 209

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 54/215 (25%), Gaps = 37/215 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P              + L         V             +L + + D
Sbjct: 27  IAVDTETMGLIPGRD----------RLCLIQLCDPSGFVTAIRVFRGQTEAPNLKKVMED 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           E +  V H + F+     +T GI        CT + ++          LK+    L    
Sbjct: 77  ERIEKVFHFARFDVAQLSQTFGIATKP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 130

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                 EG  L         D         N          Y   DV     +  +LI +
Sbjct: 131 ------EGIEL---------DKTAQSSDWGNAANLTPQQLSYAANDVRYLLSVRDKLIVM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIA 214
              E                I     + + +++  
Sbjct: 176 LQREERWE--LAQKCFSCIPIFTALDLQQYKDIFE 208


>gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5]
 gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 54/203 (26%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            T   + H   F+  +   T G+   +    CT + +R      +           ++L 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASR-LSRTYT-----DRHGLKDNLK 125

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +M                S     +        Q   EY   DV     L  +L      
Sbjct: 126 EML-----------DVDISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARLIR 174

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           +               R  LDL+
Sbjct: 175 DGRFDHATACFAFLPTRAKLDLL 197


>gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 152

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 41/185 (22%), Gaps = 41/185 (22%)

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                L+  +               ++ +  L       + +    +     +   +A+ 
Sbjct: 4   GRDIHLETSKALFGGDLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYF 63

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
            +   +      + E      +    +   RV +            +             
Sbjct: 64  KRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREG---------- 113

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVL 626
                                        I Q  + D+L  GM   ++         ++L
Sbjct: 114 --------------------------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 147

Query: 627 TVHDE 631
            VHDE
Sbjct: 148 QVHDE 152



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +KE+R+I K +   L Y  G+K          L++          + F+ +   + +   
Sbjct: 21  AKEKRSIAKSINFGLVYGMGSKKLSET-----LNISLNEAKSYIEAYFKRFPSIKDYLNR 75

Query: 485 MQDQYPEFAVKDKLIGTAC 503
           M+++  + +    L+G   
Sbjct: 76  MKEEILKTSKAFTLLGRYR 94


>gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D+     L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVKQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 45/222 (20%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------------------LTDGIIRSSR 236
              G+ +D++    L + I  + +++ E + K                         +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTL 295
               +   L  +         +G +                 I   L     A  ++++ 
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLGGIDIPEAKTIYEYLMLQKRA-AQIDSW 119

Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
                 DGR+ G +   GA  TGR +        +P                        
Sbjct: 120 LTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP-----------------------S 154

Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                    RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 155 VSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 193

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L+  L D
Sbjct: 9   IAIDTET--------LGLKPHRD--RLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLED 58

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
           + +  + H   F+  +   T G  +      CT + +   RT      LK  C  L
Sbjct: 59  KAITKIFHFGRFDLAILAHTFG--VIPDVVFCTKIASKLTRTYTDRHGLKEICSEL 112


>gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 563

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 133/473 (28%), Gaps = 120/473 (25%)

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225
           R+  L+  E    L+   ++  G     D+  +L   +           +   +L +++ 
Sbjct: 156 RMRLLTASESAGTLVAAEMHRAGLPWRADVHRELLNGLLGERYAGGGEPRRLAELADEVS 215

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 +R       ++   F   GI +       L+ +         A + ++      
Sbjct: 216 AAFGRRVRPDLPADVVKA--FAQAGIRVKSTRRWELEEL------DHPAVEPLIAYKKLY 267

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                   +  +    +GR R      G + +GRW+        +P+             
Sbjct: 268 RIWTAHGWSWLQDWVREGRFRPEY-QPGGTVSGRWTTNGGGALQIPK------------- 313

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                             +R  ++A  G +LVVAD   +E RVLA I+ +   ++   + 
Sbjct: 314 -----------------VIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHD 356

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464
            D+Y     +AF+   +          K+  L   Y   +    K +A+           
Sbjct: 357 GDLYKALSDRAFSGDREH--------AKLALLGAVYGQTSGDGLKNLAAL---------- 398

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524
                     +  A ++         E  V    +G     V  A + +  G+ Q   + 
Sbjct: 399 -------RRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPPVVSAGQDEEAGIPQEAPEG 451

Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                     GG  +  R       V++    D  ++L +  R    +            
Sbjct: 452 AGDAGGPAGSGGGTARARGRFTRNFVVQGSAADWALLLLAGLRRTLFE------------ 499

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                             Q +                  +V   HDE++   P
Sbjct: 500 ------------------QGL---------------RAQLVFFQHDEVIVHCP 519


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 93/379 (24%), Gaps = 108/379 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               +  DGR+        A+ T R        QN+P+ ++S                   
Sbjct: 1062 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1102

Query: 356  PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    VR   ++  G K   V  D + +E  VLA +  +    K   +G D +V   
Sbjct: 1103 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRA 1154

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A     P D++ +             GY+     +  +                      
Sbjct: 1155 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1180

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
               +  S         P       +     E   +    ++ G+ Q  + +         
Sbjct: 1181 KTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1240

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
             G   S                      +P+  R+                 +       
Sbjct: 1241 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1267

Query: 594  GGKLTENIVQAISRDILCEGMK-NATKN---------GYDIVLTVHDEIVSETPDTPY-F 642
               +    +Q    + L + M     ++            ++  VHD +  +        
Sbjct: 1268 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRRDFYEDRAFLINFVHDSVWMDCHVDVLRE 1326

Query: 643  SVGTLCSLMTKNPSWAKGL 661
             V   C ++     +   +
Sbjct: 1327 CVTDTCRILGSVHEYVPKV 1345


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            infantum JPCM5]
          Length = 1430

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 93/379 (24%), Gaps = 108/379 (28%)

Query: 296  SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355
               +  DGR+        A+ T R        QN+P+ ++S                   
Sbjct: 1062 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1102

Query: 356  PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                    VR   ++  G K   V  D + +E  VLA +  +    K   +G D +V   
Sbjct: 1103 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRA 1154

Query: 414  AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            A     P D++ +             GY+     +  +                      
Sbjct: 1155 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1180

Query: 474  DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
               +  S         P       +     E   +    ++ G+ Q  + +         
Sbjct: 1181 KTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1240

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
             G   S                      +P+  R+                 +       
Sbjct: 1241 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1267

Query: 594  GGKLTENIVQAISRDILCEGMK-NATKN---------GYDIVLTVHDEIVSETPDTPY-F 642
               +    +Q    + L + M     ++            ++  VHD +  +        
Sbjct: 1268 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRKDFYEDRAFLINFVHDSVWMDCHVDVLRE 1326

Query: 643  SVGTLCSLMTKNPSWAKGL 661
             V   C ++     +   +
Sbjct: 1327 CVTDTCRILGSVHEYVPKV 1345


>gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L   L +
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             +  + H + F+      T G  +  +   CT + +R          LK+    L  + 
Sbjct: 70  PAITKIFHFARFDVATLFHTFG--VMPQPVYCTKIASRLARTYTDRHGLKDLVREL-LNV 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            L+K         +      D+               L     K DV   RE
Sbjct: 127 DLSK-------QQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLARE 171


>gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
 gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
          Length = 213

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 41/212 (19%)

Query: 1   MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M    L +D ET        +G+    +   + +         V +         P  L 
Sbjct: 24  MKSPFLAVDTET--------MGLDINRD--RLCVVQMCDVTGEVSVVQIRN-YQAP-RLK 71

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-L 114
             +    V  + H + F+    K+ L I+I      CT + ++          LK+    
Sbjct: 72  ALMEAPEVEKIFHFARFDLATMKRWLDIEIKP--VFCTKIASKLVRTYTGSHGLKDVSQE 129

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L                               +     Q      +Y   DV    E+ 
Sbjct: 130 LLGVVMDKQ---------------------QQSSDWGAEQLTPEQLQYAASDVIHLVEIR 168

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
            RL+ +   E  L L D+ +     R+ LDL+
Sbjct: 169 ARLVEMLAREGRLQLADEIMRFLPTRVALDLL 200


>gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +      +    +L + L D
Sbjct: 27  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPLGATDAPNLKKLLGD 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120
             V+ + H + F+     K  G  +  +   CT + +R          LK+    L    
Sbjct: 77  PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 130

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L     K    S     + ++   A      Y   DV     L  +L  +
Sbjct: 131 ------LGIDL----SKQQQSSDWGAESLSDAQLA------YAASDVLHLHALRDKLDTM 174

Query: 181 SDGERDLWLLDQTINDRGY--RIDLDLVLK 208
              E    L            R+DLD   +
Sbjct: 175 LAREGRTDLAAACFGFLPVRARLDLDGWSE 204


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 35/204 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + L  ++  +    L     Q     +L   L D
Sbjct: 20  IAVDTET--------MGLNIHRD--KLCLLQFSNGNGEAHLVHFINQDYTAPNLKMLLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +T   + H + F+    KK L ID+  +   CT + ++          LK+ C  L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                         +H+   Q   EY  +DV    +L   L  +
Sbjct: 124 --------------LNINISKQQQSSYWGTDHLSLEQ--KEYAAKDVLYLHQLKDILQKM 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
              E  L L          R+ LD
Sbjct: 168 LLRENRLELAHDIFRFLPTRVHLD 191


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 25/182 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + + +D ET          +     +  + L   +  +  V L          S+L + L
Sbjct: 18  NTVAVDTET----------MGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQASNLKKIL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALN 117
            D ++  + H + F+    +  LGI   +    CT + ++          LK  C   L 
Sbjct: 68  SDLSITKIFHFARFDITAIRYYLGIW--AIPCYCTKIASKLARTYTDHHGLKELCNELLG 125

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         + +      +    +           L     K D    RE  + L
Sbjct: 126 IKL---------NKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQEL 176

Query: 178 IP 179
             
Sbjct: 177 AK 178


>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 36/212 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L + L D
Sbjct: 64  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLED 113

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+ + H   F+        G         CT + +R     +        L       
Sbjct: 114 PKVLKLFHFGRFDIAAMLNAFGATAAP--VYCTKIASRLVRTYTDRHGLAKLL------Q 165

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           ++           K    S     T  +         EY   DV    +L + L  + + 
Sbjct: 166 ELLAID-----ISKQQQSSDWGAETLTDAQI------EYAASDVLYLHQLREALNKMLER 214

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
           E         +       D   +    +L+  
Sbjct: 215 EGR-------METAQACFDFLPMRAKLDLMGW 239


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644
            +  R  TYG KL ENIV+A SRD+L E M+        IV+ +HD  V + P     S+
Sbjct: 7   KKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAPADR--SL 64

Query: 645 GTLCSLMTK 653
             +  +MT 
Sbjct: 65  EKIVKIMTD 73


>gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12]
 gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12]
          Length = 704

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 56/253 (22%), Gaps = 51/253 (20%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGS 287
                 ++  L     +      +         L+ +       Q   DLI   L     
Sbjct: 336 PSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKR 395

Query: 288 AILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                         V  DG++ G +   GA  TGR +        +P             
Sbjct: 396 IGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVP------------- 441

Query: 345 QALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIAGED 396
                            +  RS          I          D +G+E R LA      
Sbjct: 442 ----------GVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF---- 487

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
             +  F NGE               +      R   K       Y  G +         G
Sbjct: 488 --MARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI---GQIVG 542

Query: 457 LDLQQFSQNVKST 469
              ++  +  K  
Sbjct: 543 AGKERGKELKKKF 555



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 62/243 (25%), Gaps = 66/243 (27%)

Query: 67  MCVAHNS-LFERILFKK------TLGIDIPSKRWICTSVLARTNGL-------------- 105
           + V HN   ++    +K           +P +  I T VL+R                  
Sbjct: 55  LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114

Query: 106 -------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                    +L+     L   +   K +        F     +        A  V   + 
Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDD--------FKAMLEEQGEEYVDGAEWVSFNEP 166

Query: 159 FGEYCKRDVEATRELFKRLIPLS-------------------------DGERDLWLLDQT 193
              Y  +DV  T +L ++ +                            D E     L   
Sbjct: 167 MMAYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAK 226

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGID 252
               G+  +   + +L   +A +R +L   + +       S  Q    +       TG  
Sbjct: 227 QERNGFPFNTQAIEELYVELAAKRAELLRKLTE----TFGSWYQPKGGKELFKHPRTGKP 282

Query: 253 LVD 255
           L  
Sbjct: 283 LPS 285


>gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 25/173 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L   L +
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNAC-LALNFS 119
             +  + H + F+  +  ++ G  + +    CT + +R          LK+     LN  
Sbjct: 70  PAITKIFHFARFDVAVLYQSFG--VMTGPIYCTKIASRLTRTYTDRHGLKDLVREVLNVD 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                     +   +      DS               L     + D    RE
Sbjct: 128 L---------SKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVRE 171


>gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380]
 gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380]
          Length = 375

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 16/121 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S        + +Y E   + L   +     V +     +    + L   L D
Sbjct: 26  IAVDLEADS--------LHSYQE--KVCLLQISTSTRTVLVDPLAVED--LAALAPVLAD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SL-KNACLALNFSEH 121
            T+  + H + ++     +   I++       T +  +  G     L       L+    
Sbjct: 74  PTIRKIFHAADYDIRCLFRDFRIEVQG--LFDTMIACQMLGEKRVGLADVLAKYLDVELD 131

Query: 122 L 122
            
Sbjct: 132 K 132


>gi|238695631|ref|YP_002922658.1| P44 [Xanthomonas phage phiL7]
 gi|190343998|gb|ACE75784.1| P44 [Xanthomonas phage phiL7]
          Length = 330

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 46/309 (14%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G K+V +D   +E  V A +      +                     +  +  EQ    
Sbjct: 6   GGKIVQSDFKSLEIYVQAALTQCIQLV-------------ADLIAGLDMHVLRAEQA--- 49

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
                   +                D         S        +  S          + 
Sbjct: 50  --------WGRAEGRDYAYILKAAQDENHPEHAKWSE--LRSNAKVFSFQRAYGAGVAKI 99

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A    +     E + +A   ++  ++   +D+T+     ++E    ++R   +     M+
Sbjct: 100 AATTGMSVEDVEALIEAEAERYPELISYIEDITDY----IKENRVPTSRYCQHPQIPGMQ 155

Query: 553 RHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611
                 H + P  +   YS+    +      A+     +     ++   +VQ    +   
Sbjct: 156 CQLGRSHYITPDGKMYSYSESPSPEFVAKRPASRGGTPQSFSPTEIKNYVVQGTGGEWTK 215

Query: 612 EGMKNATKNGYD---------IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAK-- 659
             M  A +  Y          +V TVHD I  +   +T + +   L + M +  ++ +  
Sbjct: 216 AAMYLAVRAFYRRGNFGGMALLVNTVHDAIYLDASAETCHDAAAMLEAAMFEASTYMEFW 275

Query: 660 ---GLPLKA 665
               LPL  
Sbjct: 276 FKWKLPLGV 284


>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 189

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 35/214 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P          ++  + L      +  V      +      +L   +  
Sbjct: 7   IAVDTETMGLLP----------QRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEA 56

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H + F+    +  LGI +      CT + ++          LK     L    
Sbjct: 57  VNVVKIFHFARFDIATLRHNLGIQVQP--VFCTKIASKLARTYTNRHGLKEVVQELEH-- 112

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      I                 +           Y   DV     + ++L+ +
Sbjct: 113 -----------IELDKSSQSSDWGNAANLSEAQL------NYAANDVRYLISVRQKLMEM 155

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              E + W + Q        +    +L+ ++L  
Sbjct: 156 LQRE-ERWEIAQECFQVLPTLVTLDLLQFKDLFE 188


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 41/207 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L  ++  +    L     Q     +L   L D
Sbjct: 20  IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYTAPNLKALLLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL---N 117
           +T   + H + F+    K+ L ID+  +   CT + ++          LK+ C  L   N
Sbjct: 70  KTRCKIFHFARFDLASIKQYLSIDL--ENIFCTKISSKLVRTYTDNHGLKDLCRELLNIN 127

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            S+       G                                EY  +DV    +L   L
Sbjct: 128 ISKQQQSSYWG-----------------------TDNLSSEQKEYAAKDVLYLHQLKDML 164

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD 204
             +   E  L L          R +LD
Sbjct: 165 QKMLLRENRLELAHDIFRFLPTRANLD 191


>gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1]
 gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1]
          Length = 703

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 62/256 (24%), Gaps = 52/256 (20%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASS 285
            +      +++ L     +             +  L+ +       Q + DLI + L   
Sbjct: 327 FNPSSRDHIQLKLQEAGWVPTEFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLIQ 386

Query: 286 GSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342
                           V  DGR+ G++   GA  TGR +        +P           
Sbjct: 387 KRIGQAAEGDKAWLRYVEEDGRMHGSVNPNGA-VTGRATHSFPNVAQVP----------- 434

Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA-----SNG----KKLVVADLAGIEARVLAWIA 393
                              +  R    A      +G          D +G+E R LA   
Sbjct: 435 ------------SVRAPYGEECRKAFGAEHNRKPDGTKDPWVQAGIDASGLELRCLAHF- 481

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453
                +  F NGE  +            +      R   K       Y  G +       
Sbjct: 482 -----MARFDNGEYAHEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI---GQ 533

Query: 454 HCGLDLQQFSQNVKST 469
             G   ++  +     
Sbjct: 534 IVGAGKERGKELKAKF 549



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 80/316 (25%), Gaps = 92/316 (29%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQS-AMPSDLLQYL 61
           L  DIET         G+    ++       Y +D D      D       +  +++   
Sbjct: 2   LVTDIETD--------GLLKQTKRFHC-GVTYDYDTDYEKFTPDELSGYLDLLEEVVA-- 50

Query: 62  RDETVMCVAHNS-LFERILFKK------TLGIDIPSKRWICTSVLARTNGL--------- 105
             +  + V HN   F+     K          ++P +  + T V++R             
Sbjct: 51  --KDGLIVFHNGTKFDTKALTKLAKLQLNRDFELPKRNCLDTLVISRLLHANLKNTDAPL 108

Query: 106 ------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                         +L+     L   +   K                          +  
Sbjct: 109 LRKGILPGKRYGSHALEAWGYRLGVLKGEYKD------------DYKREVEAQGEEYHEG 156

Query: 154 QAW----QLFGEYCKRDVEATRELFKRL------IPLSD--------------------- 182
             W    Q   +Y  +DV  T+ L ++        P+++                     
Sbjct: 157 DEWLYFNQAMLDYNVQDVVVTKALLEKFLQDSWYFPVNEGEDWTVYTTMTATEFWSRVNY 216

Query: 183 ---GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
               E D   L   +   G+  D + +       +  R+KL   +V       R      
Sbjct: 217 SVTLEHDAAWLLAKMELNGFPFDTESIEGHYAKWSALREKLLAKLVDTFGSWYRPKGGNT 276

Query: 240 ALRMYLFLITGIDLVD 255
             R      TG  +  
Sbjct: 277 PFR---HPKTGKPMKK 289


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 38/204 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E         +G+  + +   + L   +  D    L      +  P +L + + D
Sbjct: 26  IAVDTE--------AMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            ++  + H + F+  + + +LG+ +     ICT + ++          L   C  L    
Sbjct: 75  PSITKLMHFARFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCREL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L  +       +P     +            Y   DV     L+ +L  L
Sbjct: 129 ------LGVDLSKQQQTSDWGAPELTPEQ----------KAYAASDVLHLHALWTKLEAL 172

Query: 181 SDGE--RDLWLLDQTINDRGYRID 202
              E  RDL            R+D
Sbjct: 173 LHREGRRDLAQACYDFLPTRARLD 196


>gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWGVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 27/205 (13%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET S   +    +     +  + +   +  D    +           +L     D     
Sbjct: 34  ETASAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQTEAPNLAALFTDAAKPK 93

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKM 125
           + H + F+  + +  LGI +      CT + ++          LK+    L         
Sbjct: 94  IFHFARFDVAVLRHYLGIHVTP--VWCTKIASKLVRTYTDRHGLKDITREL--------- 142

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                L     K    S     T ++   A      Y   DV    +L  +L  + + E 
Sbjct: 143 -----LGVELSKQQQSSDWAAETLSDAQLA------YAASDVLHLHDLKAKLEMMLEREE 191

Query: 186 DLWLLDQTINDRGYR--IDLDLVLK 208
              + +   +    R  +DL    +
Sbjct: 192 RTNIAEACFSFLPVRAELDLKGWEE 216


>gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 699

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/724 (10%), Positives = 154/724 (21%), Gaps = 153/724 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M     D ET   +P                L   +     +      ++          
Sbjct: 1   MKIWSFDTETHRKRPGLVSPP----------LVCGSIAARELGSERLLDKEQARQFFANA 50

Query: 61  LRDETVMCVAHNSLFERILFK--KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + +  V  V  N  ++  +     +  I+                     L +       
Sbjct: 51  ISNRDVHLVGANLPYDLGVMAADNSWLIE----SIFD------ALDAGR-LHDVATREAL 99

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE------ATRE 172
            +        K L              +  R        L   Y   D+           
Sbjct: 100 IDIA------KGLHGVDPTTGRKLDDDEGARY---PLALLVKRYLGLDISEDKKNPLAWR 150

Query: 173 L-FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           L +  L  +      +  ++    D  Y ID+    + Q         L  +  ++    
Sbjct: 151 LRYGELDGVPVERWPVEAVEYPKCDARYTIDVFFKQEEQARDVTNGGNLHAEPDQMRAAF 210

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH----SNITQLAKDLILNRLASSGS 287
           +           +     G+ + ++ +        +            D   +    +  
Sbjct: 211 VLHLASI-----WGLRTNGVAVAELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAAL 265

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
                       +   R           R           ++L +  + ++  +  +  +
Sbjct: 266 VTAAYGGNPPYTAPSARYPD--GQIATDRDTLLGSGDPLLEDLGKSGKVDKYKSTYLDVV 323

Query: 348 NRGETIADPLG-----------------LASDCVRSCIIASNGKKLVVADLAGIEARVL- 389
             G ++                           +R    A  G      D  G+E R + 
Sbjct: 324 EAGVSLPINPRFNVLVSTTRVSSDYQQLPQKGGIREVHEARPGYVFCSVDYGGLELRTMA 383

Query: 390 ---AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI----------DKVSKEQRAIGKVME 436
               W  G      A  +G D++    A+                D V+   R + K++ 
Sbjct: 384 QRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVAVAFRQLAKILN 443

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
              G           A                    E           M  +        
Sbjct: 444 FGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGVERVPVTVQRKPKMVCRT------- 496

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
                    + + W A         +DL      +   GG                    
Sbjct: 497 --CVEVARELDEKWLAAWPE----QRDLQRKAKSLTYGGG-------------------- 530

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616
                                + +    + ++R      ++     Q +       GM  
Sbjct: 531 --------------------VADVMIPGANILRGACGYTQILNTPFQGLGAVGCKLGMWR 570

Query: 617 ATKN----------GYDIVLTVHDEIVSETPDTPYFSVGTLCS----LM-----TKNPSW 657
            ++           G  +VL VHDE++SE        +         LM        P  
Sbjct: 571 VSREMYTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERKALLMRDAMKETTPDL 630

Query: 658 AKGL 661
           A  +
Sbjct: 631 AAAV 634


>gi|322786066|gb|EFZ12677.1| hypothetical protein SINV_07179 [Solenopsis invicta]
          Length = 136

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 29/98 (29%)

Query: 597 LTENIVQAISRDILCEGMK----------------------------NATKNGYDIVLTV 628
                VQ  + DI+ + M                             N  + G  +VL +
Sbjct: 25  AVNTKVQGSAADIVKKAMISIEDKIRSYFPDSTVIFPEVHTTRKLRSNLQQRGGYLVLQL 84

Query: 629 HDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665
           HDE++ E        V  +    M      +  LP+K 
Sbjct: 85  HDELLYEVNLVDLKQVAVIIKESMENVCQLSVPLPVKV 122


>gi|281306681|ref|YP_003345487.1| hypothetical protein SBWP25_0022 [Pseudomonas phage phi-2]
 gi|271277986|emb|CBH51592.1| hypothetical phage protein [Pseudomonas phage phi-2]
          Length = 331

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 38/230 (16%)

Query: 2   SKLFIDIET------RSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWDRTE----Q 50
             L IDIET              VG+    E+  I      W  EP V   D  E     
Sbjct: 76  RILLIDIETAPILGYVWSLWKQNVGLNQIKEEWYILSYCAKWLGEPEVIYEDIRENPFCD 135

Query: 51  SAMPSDLLQYLRDETVMCVAHNSL-FE------RILFKKTLGIDIPSKRWICTSVLARTN 103
             + + L + + DE  + +  N   F+      R++    L       + I T ++A+  
Sbjct: 136 KPLLAGLWKLM-DEADIIIGQNGKAFDMPKIQARLVMNGYL--PPRPYKVIDTMLMAK-- 190

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGK--ALIARFCKGSIDSPPY---DCTRANHVQAWQL 158
                         F+ +  +   G+   L           P +         + +AW  
Sbjct: 191 ----------QQFRFTSNKLEWMTGESANLTTLTKSKHSKFPGFLLWAECLKKNPEAWDE 240

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
             EY   DV +  EL+ +L P      +L    ++      R   D + +
Sbjct: 241 MKEYNIPDVTSMEELYLKLRPWYQQHPNLAAYVESEEMLCPRCLSDDIKQ 290


>gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 76/307 (24%), Gaps = 57/307 (18%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
            +      +    F   G  +       LK       I   A   +L     S       
Sbjct: 217 FNPDSPQQVLA-AFRKAGHPIETTRAWELK------TIDHPAVPPLLRYKELS------- 262

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
                      R+      +G +    W G      + P  +R             R  T
Sbjct: 263 -----------RVH---SAHGWNWLSEWVGDGPGGPDSPA-KRFRPRYVVGGVVTGRWAT 307

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412
                      +R+   A  G KLVVAD A +E R+LA ++ +   I A    +      
Sbjct: 308 DGGAALQIPKVIRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMIAAAEADDMYAALA 367

Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                +              K+  L+  Y G A     + +                   
Sbjct: 368 PTFDGSRDD----------AKIALLSAMYGGTAGNATALLTVM----------------R 401

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--QGVLQLWKDLTEGFAC 530
             +  A ++         +  +    +G         W       G  +  +D       
Sbjct: 402 RRFPTAYAYVEQAARDGEKGGLVRTWLGRTSPAPGDGWWNALTGPGGTRSARDRGRFTRN 461

Query: 531 VVQEGGS 537
            V +G +
Sbjct: 462 FVVQGTA 468



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 45/194 (23%), Gaps = 24/194 (12%)

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                  + A          D        +  G + +A  +  V R         V    
Sbjct: 356 AAEADDMYAALAPTFDGSRDDAKIALLSAMYGGTAGNATALLTVMRRRFPTAYAYVEQAA 415

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQL--------MRERTYGGKLT-ENIVQAISRDILCEG 613
               +          +                  R     G+ T   +VQ  + +     
Sbjct: 416 RDGEKGGLVRTWLGRTSPAPGDGWWNALTGPGGTRSARDRGRFTRNFVVQGTAAEW-ALS 474

Query: 614 MKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKG-----L 661
           M          +   D+V   HDEI+     +   +V   +     +      G     +
Sbjct: 475 MMALLRSRLWERELGDLVFFQHDEIIVHCEQSRAETVAGLIQECADQATRLLFGRLSMRV 534

Query: 662 PLKAEGYEAKRYRK 675
           PL A       Y K
Sbjct: 535 PLSAA--IVDSYDK 546


>gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
 gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
          Length = 208

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 56/210 (26%), Gaps = 37/210 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVAMLSD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
                + H   F+  +   T G+        CT + +R          LK+         
Sbjct: 74  PARQKIFHFGRFDIAVLFHTFGVTASP--VFCTKIASRLARTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L                  A+ +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKELLDVDISKQQQSSDWAADILSPAQL--EYAASDVLHLHALRDKLTAR 171

Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLK 208
              DG  +L     +      ++DL    +
Sbjct: 172 LLRDGRMELAEACFSFLPTRAKLDLLGWEE 201


>gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 208

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVHMLAD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
                + H   F+  +   T G+   +    CT + +R          LK+         
Sbjct: 74  PARQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLCRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L          +       A  +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKEMLEVDISKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +  +   D        R  LDL+
Sbjct: 172 LIRDGRIEHADACFAFLPTRAKLDLL 197


>gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 204

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 42/225 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID ET        +G+  +    +      +  D    +      +    +L + L 
Sbjct: 19  QVAIDSET--------MGL-RFRRDPLCV-VQLSSGDGNAHVVRLNRPAYDCPNLKRLLT 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D  V+ + H   F+  +F   LG++       CT + ++          LK+    L   
Sbjct: 69  DPKVLKIFHFGRFDIGMFDLHLGVETRP--VYCTKIASKLARTYTDRHGLKDVAKELA-- 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                             G   S     +     +  Q   +Y   DV     +  RL  
Sbjct: 125 ------------------GVDMSKAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNE 166

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +   E         +       D   V    +L   +   +    
Sbjct: 167 MLVREGR-------MELAQACFDFLPVRSRLDLAGWDEIDIFAHA 204


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 36/206 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E         +G+    +   + L   +++D    L       A P +L + L
Sbjct: 20  RSIAVDTE--------AMGLLHVRD--RLCLIQLSFNDGNAHLIQFKNDYAAP-NLRKIL 68

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D+ +  + H + F+  +    L  +  +    CT + +R         SLK  CL L  
Sbjct: 69  GDKNITKIFHFARFDVSIICYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       L  +  K    S        +          Y   DV    ++ ++L 
Sbjct: 125 ------------LDTKLNKQQQSSDWGSENLTDKQ------KSYAASDVLYLHKIKEKLD 166

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204
            + + E    L  +       R++LD
Sbjct: 167 LMLERENRKELAQKCFEFLPIRVELD 192


>gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11]
 gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11]
          Length = 709

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 62/263 (23%), Gaps = 51/263 (19%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSH----SNITQLAKDL 277
               + ++ +      + + L     +        +      +L H        Q   DL
Sbjct: 331 YTPVEHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLEHVRVGDPEKQRCIDL 390

Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
           I   L                   V  DG++ G++   GA  TGR +        +P   
Sbjct: 391 IKEYLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVP--- 446

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS---NG-----KKLVVADLAGIEA 386
                                      +  R+   A    +G           D +G+E 
Sbjct: 447 --------------------GVRSPYGEPCRAAFGAEHHLDGLTGQPWVQAGIDASGLEL 486

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
           R LA        +  + +G    V                  R   K       Y  G +
Sbjct: 487 RCLAHF------MSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTFIYGFLYGAGDE 540

Query: 447 VFKTMASHCGLDLQQFSQNVKST 469
                    G   ++  +  K  
Sbjct: 541 KI---GQIVGAGKERGKELKKKF 560



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 73/679 (10%), Positives = 152/679 (22%), Gaps = 130/679 (19%)

Query: 58  LQYLRDE---TVMCVAHNS-LFERILFKKTLG------IDIPSKRWICTSVLARTNGL-- 105
           L  L  E     + V HN   ++  +  K           +P +  + T VL+R      
Sbjct: 43  LDALEAEVARGGLIVFHNGHKYDAPVLTKLAKLQLNREFHLPRENVVDTLVLSRLLFANI 102

Query: 106 -------------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                                +L+     L   +   K +  K L  +       +    
Sbjct: 103 KDSDMALLRSGKLPGKRYGSHALEAWGYRLGEMKGEYKDDFKKLLEEQGEDYVDGAEWIS 162

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI---------------------------- 178
                     +    Y  +DV  T+ L ++L+                            
Sbjct: 163 FN--------EPMMAYNVQDVVVTKALLEKLLSDKHYFPLFGSNTIEFYTSAYCLRFWEE 214

Query: 179 --PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                  E     L       G+  +   + +L   +A  R +L + +        +   
Sbjct: 215 ACEAVWLEHRAAWLLAKQERNGFPFNTKAIEELYVELAGRRSELLQTLTDTFGTWYQPKG 274

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
            T      L   TG  L                                           
Sbjct: 275 GTELF---LHPRTGKPLGK----------------YPRVKYPKQGGIYKKPKNKAQREGR 315

Query: 297 EAVSSDGRLRGTLQFYGASRTGRW--SGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354
           E    D R       Y       +  S        L          T+        E + 
Sbjct: 316 EPCELDTRDYVEGAPYTPVEHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLE 375

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                  +  R           ++ +   I+ R+     G+   ++       I+ +   
Sbjct: 376 HVRVGDPEKQR--------CIDLIKEYLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNP 427

Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ--NVKSTSTF 472
                   + +     +G+V  +   Y    +      +   LD             ++ 
Sbjct: 428 --NGAVTGRATHSFPNLGQVPGVRSPYGEPCRA--AFGAEHHLDGLTGQPWVQAGIDASG 483

Query: 473 EDWEQAESHHLWMQDQYPE----FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE-- 526
            +            D              +  TA EL  +        +        +  
Sbjct: 484 LELRCLAHFMSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTF--IYGFLYGAGDEK 541

Query: 527 --GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV-YSDVKGDCSYLNTA 583
                   +E G    ++       +    +     ++ SSR +     VK    ++   
Sbjct: 542 IGQIVGAGKERGKELKKKFLENTPAIAALREGIQQTLVESSRWVAGEQKVKWKRRWIKGL 601

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI------------VLTVHDE 631
             + +  R+        ++Q+    I    +    +                 +  VHDE
Sbjct: 602 DGRKVHVRS-PHAALNTLLQSAGALICKLWIVETEELLLKAGLKHGWDGDFAYMAWVHDE 660

Query: 632 IVSETPDTPYFSVGTLCSL 650
           I      +       +  +
Sbjct: 661 IQVACRTSEI--AQQVIDI 677


>gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFRCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
 gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
          Length = 648

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSD 56
             L++D E              Y     ++L          ++  V + D  ++  +  D
Sbjct: 21  KTLWLDTE----------IADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQD 70

Query: 57  LL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-----RTNGLP-SSL 109
            + Q +++  +  V HN+ F+     K LG     K   CT  +A      +  +P   L
Sbjct: 71  FINQIMKNPQIEKVFHNASFDI----KYLGGKEEVKNVTCTLKIAKKIGKHSLNVPNLKL 126

Query: 110 KNACLAL 116
           K     L
Sbjct: 127 KTLAEYL 133


>gi|225626350|ref|YP_002727846.1| hypothetical protein PPphikF77_gp27 [Pseudomonas phage phikF77]
 gi|225594859|emb|CAX63144.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 348

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 29/196 (14%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMP 54
             L +DIET              VG+        I      W   + V   D  +   + 
Sbjct: 94  KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDC-QGDPLD 152

Query: 55  S-----DLLQYLRDETVMCVAHNSL-FER-ILFKKTLGIDIPSKR---WICTSVLARTNG 104
                  L + L +  ++ V  N   F+   +  +     +P  R    I T ++A+   
Sbjct: 153 DMHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQF 211

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +S K     +       K    K L  +F     D         ++ +AW+    Y  
Sbjct: 212 AFTSRKL--EYMTHKACTIK----KRLHGKF--PGFDLW--AACLQDNPEAWEEMRLYNI 261

Query: 165 RDVEATRELFKRLIPL 180
            DV +  EL+  + P 
Sbjct: 262 DDVRSMEELYILMRPW 277


>gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
 gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
          Length = 568

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 110/371 (29%), Gaps = 55/371 (14%)

Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTI 194
            +    S  +D      V    L   Y  +           R+  L+  E    L+   +
Sbjct: 115 AEPGSQSSLFDPPSGTTVPFDALLQVYAGQVRRHDAAEHPDRMRLLTASESAGLLVAAEM 174

Query: 195 NDRGYRIDLDLVLKLQELIAQERK-------KLDEDIVKLTDGIIRSSRQ-TYALRMYLF 246
           +  G     D+  ++ + +  ER        +L E   +++    R  R    A  +  F
Sbjct: 175 HRSGLPWRADVHREVLDELLGERYAGGGEPRRLAEAADEVSAAFGRRVRPDLPADVVKAF 234

Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
              GI +       L+ +         A + ++              +       +GR R
Sbjct: 235 AQAGIKVRSTRRWELEKV------DHPAVEPLIRYKKLYRVWTAHGWSWLTDWVREGRFR 288

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
                 G + +GRW+        +PR                               +R 
Sbjct: 289 PEY-QPGGTVSGRWTTNGGGALQIPR------------------------------VIRQ 317

Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            ++A  G +LVVAD   +E RVLA I+ +   ++   +  D+Y     +AF+   D    
Sbjct: 318 AVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYTALSDRAFHGDRDH--- 374

Query: 427 EQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
                 K+  L   Y   +    K +A+         +   ++    E+     +     
Sbjct: 375 -----AKIALLGAVYGQTSGDGLKNLAALRRRFPHAVAYVDEAAKAGEEGRLVRTWLGRT 429

Query: 486 QDQYPEFAVKD 496
                     +
Sbjct: 430 SPPAAGAGESE 440


>gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I      LI   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPG--AKLIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++    V  DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTHV-KDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G++ R+LA    ++ 
Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLKLRMLAHYMRDER 186


>gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 99

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 162 YCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           Y   D + T +L  ++ P               E  L  +   +   G +ID  ++ K  
Sbjct: 1   YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           E I     +L++       G   +   T  L+  LF   
Sbjct: 61  EEITLRLAELEKKAHD-IAGEAFNLSSTKQLQTILFEKQ 98


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 26/178 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET          +     +  + L   A     V L   +     P +L+  L D
Sbjct: 32  VAIDTET----------MGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAP-NLVSVLSD 80

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALNFS 119
             ++ + H + F+  + +  LG+        CT + ++          LK  C   L   
Sbjct: 81  PNIIKIFHFARFDIAVMRYYLGMWANPC--YCTKIASKLVRTYTDHHGLKELCYELLGVK 138

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                       + +      +S   +           L     K D    RE  + L
Sbjct: 139 L---------NKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKREL 187


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 88/291 (30%), Gaps = 65/291 (22%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             +L E+I +     +R       +R   F   G+ L       L+ +         A  
Sbjct: 211 LAELAEEISRAFGRRVRPDLPAEVVRA--FAEAGVKLTSTRRWELEKV------DHPAVA 262

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +L              +       +GR R      GA  +GRW+        +P+    
Sbjct: 263 PLLTYKKLYRVWTAHGWSWLADWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK---- 317

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR  ++A  G +LVVAD A +E R+LA +AG+ 
Sbjct: 318 --------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDT 351

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHC 455
             +   A  +D+Y     +AF    D          K+  L   Y   +    K +A+  
Sbjct: 352 ALLDVAAKADDLYAAVSDRAFAGDRD--------RAKIAVLGAIYGQTSGDGLKNLAAL- 402

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                              + +A ++         E  +    +G  C  +
Sbjct: 403 ----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 437


>gi|255601377|ref|XP_002537664.1| DNA polymerase I, putative [Ricinus communis]
 gi|223515546|gb|EEF24720.1| DNA polymerase I, putative [Ricinus communis]
          Length = 71

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 612 EGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLK 664
             M               +++ VHDE+V E P      V   L  LM         +PL 
Sbjct: 1   MAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEVVREKLPELMKNVAE--LKVPLL 58

Query: 665 AEGYEAKRY 673
           AE    K +
Sbjct: 59  AEVGIGKNW 67


>gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 208

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 53/203 (26%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  L D
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            T   + H   F+  +   T G+   +    CT + +R      +           +   
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASR-LSRTYT-----DRHGLKD--- 122

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                  L          +       A  +   QL  EY   DV     L  +L      
Sbjct: 123 ------NLKEMLDVDISKTQQSSDWGAETLSPAQL--EYAASDVLYLHALRDKLTARLIR 174

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           +               R  LDL+
Sbjct: 175 DGRFDHATACFAFLPTRAKLDLL 197


>gi|213021568|ref|ZP_03336015.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 70

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665
             I  +    A +    +++ VHDE+V E       +V   +  LM         +PL  
Sbjct: 1   AMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLV 58

Query: 666 EGYEAKRY 673
           E    + +
Sbjct: 59  EVGSGENW 66


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 88/291 (30%), Gaps = 65/291 (22%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
             +L E+I +     +R       LR   F   G+ L       L+ +         A  
Sbjct: 221 LAELAEEISRAFGRRVRPDLPAEVLRA--FAEAGVKLTSTRRWELEKV------DHPAVA 272

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336
            +L              +       +GR R      GA  +GRW+        +P+    
Sbjct: 273 PLLTYKKLYRVWTAHGWSWLADWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK---- 327

Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396
                                      VR  ++A  G +LVVAD A +E R+LA +AG+ 
Sbjct: 328 --------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDT 361

Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHC 455
             +   A  +D+Y     +AF    D          K+  L   Y   +    K +A+  
Sbjct: 362 ALLDVAAKADDLYAAVSDRAFAGDRD--------RAKIAVLGAIYGQTSGDGLKNLAAL- 412

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                              + +A ++         E  +    +G  C  +
Sbjct: 413 ----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 447


>gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
 gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
          Length = 548

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 71/290 (24%), Gaps = 63/290 (21%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +    L   I +        +     L    F   GIDL +     L+ +         A
Sbjct: 198 RRLADLAAQIAEAFGVRQVHADSPAELLR-AFARAGIDLPNTRSWVLRGV------DHPA 250

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L                 +A   DGR +      G   +GRW+        +P+  
Sbjct: 251 VPLVLEYKELYRIWTAHGRAWRDAWVRDGRFQPEYVPGGV-VSGRWATRGGGALQIPK-- 307

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R   +A  G + VVAD   +E RVLA ++G
Sbjct: 308 ----------------------------VIRRAAMADPGWRFVVADAGQLEPRVLAAVSG 339

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
           +     A A G+                      R   K+  L   Y             
Sbjct: 340 DARLAAAGATGDLYQALARDAFGG---------DRGRAKLALLGAMYGQTGG-------- 382

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                              ++  A  +            +    +G  C 
Sbjct: 383 --------EAVPALAGVRGNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 424



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 48/211 (22%), Gaps = 22/211 (10%)

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
             A   +           + +    +   ++   +        + +           G  
Sbjct: 324 ADAGQLEPRVLAAVSGDARLAAAGATGDLYQALARDAFGGDRGRAKLALLGAMYGQTGGE 383

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                   R  +           E  A   + GG + +      P         D  +  
Sbjct: 384 AVPALAGVRGNYPTAFGY----VEAAARTGEAGGLVRSWLGRTCPP-GSAGFATDEGVAD 438

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMKNATKN 620
           P        D +   +    +  +  R           ++QA + +       +      
Sbjct: 439 PD----AAGDPQSPRARAARSRGRFTR---------NFVIQATAAEWASTLLAVLRGELA 485

Query: 621 G--YDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           G   ++V   HDE++   P      V     
Sbjct: 486 GTEAELVFFQHDEVIVHCPAEQAERVAEAVQ 516


>gi|162147898|ref|YP_001602359.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 38/204 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E         +G+  + +   + L   +  D    L      +  P +L + + D
Sbjct: 26  IAVDTE--------AMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMAD 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            ++  + H + F+  + + +LG+ +     ICT + ++          L   C  L    
Sbjct: 75  PSITKLMHFARFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCREL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L  +       +P     +            Y   DV     L+ +L  L
Sbjct: 129 ------LGVDLSKQQQTSDWGAPELTPEQ----------KAYAASDVLHLHALWTKLEVL 172

Query: 181 SDGE--RDLWLLDQTINDRGYRID 202
              E  RDL            R+D
Sbjct: 173 LHREGRRDLAQACYDFLPTRARLD 196


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 89/293 (30%), Gaps = 65/293 (22%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L E++ +     +R       LR   F  +G+ L       L+ +         A
Sbjct: 219 RRLAELTEEVSRAFGRHVRPDLPADVLRA--FAESGVKLTSTRRWELEKV------GHPA 270

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
              +L                      +GR R      GA  +GRW+        +P+  
Sbjct: 271 VAPLLAYKKLYRVWTAHGWGWLADWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK-- 327

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        VR  ++A  G +LVVAD A +E R+LA +AG
Sbjct: 328 ----------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAG 359

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMAS 453
           +   +   A  +D+Y     +AF    D          K+  L   Y   +    K +A+
Sbjct: 360 DAGLLDVAAKADDLYAAVSDRAFAGDRD--------RAKIAVLGAIYGQTSGDGLKNLAA 411

Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                                + +A ++         E  +    +G  C  V
Sbjct: 412 L-----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPV 447


>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
 gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
          Length = 204

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 54/210 (25%), Gaps = 37/210 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L + L D
Sbjct: 20  VAIDTETLGLNP----------HRDRLCVVQLSNGDGSADVVQIPAGHTDAPNLKKLLGD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             +  + H + F+  +     G+        CT + ++          LK+    +   E
Sbjct: 70  PAITKLFHFARFDIAVLYHAFGVMAQP--VYCTKIASKLVRTYTDRHGLKDLVREMLGVE 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                           K    S     + +           Y   DV     L  +L  +
Sbjct: 128 IS--------------KQQQSSDWGAASLSEAQL------SYAASDVLHLHALRDKLDAM 167

Query: 181 SDGERDLWLLDQTINDRGY--RIDLDLVLK 208
              E    L            R+DL    +
Sbjct: 168 LAREDREPLAKACFEFLPTRARLDLQGWEE 197


>gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 57/216 (26%), Gaps = 37/216 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + L   +  D    L    +       L   L D
Sbjct: 20  VAIDTET--------MGLDPRRD--RLCLVQMSSGDGHAHLVQIAKGQTEAPRLCAMLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V  + H + F+        G+        CT + +   RT      LK     L    
Sbjct: 70  PKVEKLFHFARFDIAALYNAFGVVTAP--VFCTKIASKMVRTFTDRHGLKYLLQDL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +     +      +Y   DV    +L   L+  
Sbjct: 124 ----------------VGVDVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTR 167

Query: 181 SDGE--RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              E   +L            R+DL    +  ++  
Sbjct: 168 LAREGRTELAQACFDFLPARARLDLMGWEEPNDIFH 203


>gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
 gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
          Length = 669

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 74/712 (10%), Positives = 154/712 (21%), Gaps = 133/712 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQ 59
           M+    D ET     L + G+ A      +   + A       +L D+ +         +
Sbjct: 1   MNVWSFDTETW----LIQPGLLA----PPLVCGSIAAAAPGSERLLDKAQARQF---FRE 49

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPS-------KRWICTSVLARTNGLPSSLKNA 112
            +       V  N  ++  +        +          R  C  +      +   L   
Sbjct: 50  AIAASDTRLVGANLAYDLGVMAADDPSLVAPIFAALEAGRLHCVQIREALIDIARGL--- 106

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                          G+ L         D        A  VQ +        +       
Sbjct: 107 ---YGVDPS-----TGRKL--------DDDEGARYPLALLVQRYLGLDISEDKKNPKAWR 150

Query: 173 L-FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL---- 227
           L +  L  +               D  Y +D+    +           L  +  ++    
Sbjct: 151 LRYAELDGVPVERWPTEAAAYPKRDARYTLDVFFRQEAVARETPNGGNLHAEAEQMRAAF 210

Query: 228 --TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
                 I   R        L      +  +       + +  ++ T+ +K         +
Sbjct: 211 ALHLASIWGLRTNGDSVAVLRERVEREWGENRAKFQAAGIYRADGTKDSKR-------LA 263

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
                  +      +   R           R           ++L +  R ++  +  + 
Sbjct: 264 ALVTAAYDGQPPITAPSDRFPD--GQVATDRDTLLGSGDALLEDLGKSGRVDKYKSTYLD 321

Query: 346 ALNRGETIADPLG-----------------LASDCVRSCIIASNGKKLVVADLAGIEARV 388
            +  G ++                           +R    A  G      D  G+E R 
Sbjct: 322 VVEAGTSLPINPRFNVLVSTTRVSSDYQQLPQKGGIREVHEARPGFAYCSVDYGGLELRT 381

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
           +A  A                       +     K+++   +   V  LA          
Sbjct: 382 MAQRA----------------------IWELGYSKMAEALNSGLDVHTLA--------AA 411

Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508
           + + +     L +          F    +  +                +        +  
Sbjct: 412 EFLGASYDELLPKVKAKDPLAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLA 471

Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                          +      V ++   +    V     L  +             R  
Sbjct: 472 K--------RADVCGIERIVITVQRKPKMVCRACVEVAKELDTKWLNAWPEQRELQQRAK 523

Query: 569 V--YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620
              Y     D         +     T   ++     Q +        M   ++       
Sbjct: 524 SSTYGGGFADVMIPGANILRGGCGYT---QILNTPFQGLGAVGCKLAMWRVSREMYVDRR 580

Query: 621 ----GYDIVLTVHDEIVSETPDTPY----FSVGT----LCSLM-TKNPSWAK 659
               G  +VL VHDE++SE P         +       +   M    P  A 
Sbjct: 581 SPLYGSRLVLMVHDELISELPANSAQRMHDAAERKAYLMREAMKETTPDLAP 632


>gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 199

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKXIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|167600469|ref|YP_001671968.1| hypothetical protein PPLUZ19_gp24 [Pseudomonas phage LUZ19]
 gi|161168332|emb|CAP45496.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 348

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 29/196 (14%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMP 54
             L +DIET              VG+        I      W   + V   D  +   + 
Sbjct: 94  KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDC-QGDPLD 152

Query: 55  S-----DLLQYLRDETVMCVAHNSL-FER-ILFKKTLGIDIPSKR---WICTSVLARTNG 104
                  L + L +  ++ V  N   F+   +  +     +P  R    I T ++A+   
Sbjct: 153 DMHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQF 211

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +S K     +       K    K L  +F     D         ++ +AW+    Y  
Sbjct: 212 AFTSRKL--EYMTHKACTIK----KRLHGKF--PGFDLW--AACLQDNPEAWEEMRLYNI 261

Query: 165 RDVEATRELFKRLIPL 180
            DV +  EL+  + P 
Sbjct: 262 DDVRSMEELYILMRPW 277


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 54/186 (29%), Gaps = 35/186 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P           +  + +   +  D    +           +L     D
Sbjct: 22  VAVDTETLGLNP----------HRDRLCVVQLSSGDGSADVVQIERGQLAAPNLQALFED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            +   + H + F+  + K+ L I +      CT + ++          LK+ C  L    
Sbjct: 72  ASKPKIFHFARFDVAILKEYLDISVSP--VWCTKIASKLVRTYTDRHGLKDICREL---- 125

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L     K    S        +   A      Y   DV    +L +RL  +
Sbjct: 126 ------IGVDL----SKQQQSSDWAAEKLTDAQLA------YAASDVLHLHKLKERLEFM 169

Query: 181 SDGERD 186
            + E  
Sbjct: 170 LEREER 175


>gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 204

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 42/222 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID ET+    L + G+          L   +  D    +      +    +L   L
Sbjct: 18  KRVAIDTETQGL-SLVRDGLC---------LVQLSAGDGEAHIVQPDRATYDCPNLKALL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D  V  + H + F+  + ++ LG+ +      CT + ++          LK+ C     
Sbjct: 68  ADTGVEKLLHFARFDLAIIERDLGVTM--TPVFCTKIASKLVRTYTDRHGLKDVCR---- 121

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G  L  +             +        +    Y   DV     +   L 
Sbjct: 122 ------EIAGVELSKQ----------QQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLT 165

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            + + E         +       D        +L+  +   +
Sbjct: 166 AMLEREGR-------MEMARACFDFLPSRARLDLMGWDETDI 200


>gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 208

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 50/203 (24%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L   L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLTHMLAD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H   F+  +   T G+   +    CT + +R                      
Sbjct: 74  PARQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL-----------------TRTY 114

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G     +       S     +     +      EY   DV     L  +L      
Sbjct: 115 TDRHGLKDNLKEMLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVR 174

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           +  L   D        R  LDL+
Sbjct: 175 DGRLDHADACFAFLPTRAKLDLL 197


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 40/211 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPS--DLL 58
           + +D ET        +G+    +   + L   +  D     V++             +L 
Sbjct: 29  VAVDTET--------MGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCPNLK 78

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA 115
           + L    V  + H + F+  +    LG+       ICT + ++          LK+ C  
Sbjct: 79  RLLEHPGVTKLFHFARFDLAMLHHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCRD 136

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L                     G   S     +     +       Y   DV     ++ 
Sbjct: 137 L--------------------VGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWA 176

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           RL  L   E    L D        R  LDL+
Sbjct: 177 RLEALLVREGRRELADACYRFLPARAKLDLL 207


>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 529

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 32/219 (14%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            + ++ +  +   ++         +   L    V+ + HN    R +F     I+     
Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383

Query: 93  WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                +++ +                         GK   +     + +        +  
Sbjct: 384 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 421

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
                      +   E    +++R          L  +   +   G  +++  + +L + 
Sbjct: 422 TLIAIHEKLKQRLFQEKLLTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 475

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
             Q    L+++I  L  G   +      L   LF   G+
Sbjct: 476 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGL 513


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET     L             + +   +  D    +    +      +L   L D
Sbjct: 22  VAVDTETLGLNLLRD----------RLCVVQLSPGDGSADVVQIEKGMTAAPNLTALLSD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H + F+  + ++ LGI +      CT + ++                      
Sbjct: 72  PARTKIFHYARFDVAILRQNLGIHVDP--VWCTKIASKLC-----------------RTY 112

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I R   G   S     +     Q       Y   DV     L ++L  +   
Sbjct: 113 TDRHGLKDITRELLGVDISKQQQSSDWAAEQLTDAQLAYAASDVLHLHALKEKLEFMLRR 172

Query: 184 ERDLWLLDQTINDRGYR 200
           E    L + +      R
Sbjct: 173 EERTHLAEASFGFLPTR 189


>gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPSLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                       RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +   ++      +L++ L D
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQISKGQKSAPNLVKLLGD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
             V+ + H   F+  +   T G  +  +   CT + +   RT      LK  C  L
Sbjct: 72  NAVIKIFHFGRFDLAILAHTFG--VMPEAIFCTKIASKLTRTYTDRHGLKEICNEL 125


>gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I +    LI   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTKKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021]
 gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
 gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
          Length = 208

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 37/211 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +   +       +L+  L D
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRISAGQKQAPNLVSMLAD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            T   + H   F+  +   T G+        CT + +R          LK+         
Sbjct: 74  PTRQKIFHFGRFDIAVLFHTFGVTASP--VFCTKIASRLARTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L                  A+ +   QL  EY   DV     L  +L   
Sbjct: 123 ---------NLKELLDIDISKQQQSSDWAADILSPAQL--EYAASDVLHLHALRDKLTAR 171

Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLKL 209
              DG  +L     +      ++DL    + 
Sbjct: 172 LLRDGRMELAEACFSFLPTRAKLDLLGWEEA 202


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 40/211 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPS--DLL 58
           + +D ET        +G+    +   + L   +  D     V++             +L 
Sbjct: 29  VAVDTET--------MGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCPNLK 78

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA 115
           + L    V  + H + F+  +    LG+       ICT + ++          LK+ C  
Sbjct: 79  RLLEHPGVTKLFHFARFDLAMLYHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCRD 136

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L                     G   S     +     +       Y   DV     ++ 
Sbjct: 137 L--------------------VGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWA 176

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           RL  L   E    L D        R  LDL+
Sbjct: 177 RLEALLVREGRRELADACYRFLPARAKLDLL 207


>gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
 gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
          Length = 206

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 35/206 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D ET        +G+    +   + +   +  D    +      +    +L   L
Sbjct: 18  KSIALDSET--------MGLRFGRDD--LCVVQLSAGDGHAHVVRLNRPAYDCPNLKALL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D +V+ + H   F+  +F   LG+D       CT + ++          LK+    L  
Sbjct: 68  VDPSVLKLFHYGRFDIGMFALHLGVDTSP--VYCTKIASKLARTYTDRHGLKDLSREL-- 123

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                              G   S     +             Y   DV     L  +L 
Sbjct: 124 ------------------VGVDMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLD 165

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204
            +   E    L     +    R+ LD
Sbjct: 166 AMLAREGRSALAQACFDFLPQRVKLD 191


>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
          Length = 208

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 34/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+  + +   + L     +   V L   +      S L + L  
Sbjct: 26  LAVDSE--------AMGLLPHRD--RLCLVQLCDEAGLVSLVRLSAGLTQASQLQKVLEA 75

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V+ + H + F+  + +  LGI +     +CT V +   RT      LK+         
Sbjct: 76  PAVIKLFHYARFDVAMLRHHLGIRVQP--IVCTKVASKLARTYSPRHGLKDLV----LET 129

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              ++               D           ++  +    Y   DV      +++L  +
Sbjct: 130 VGVEL---------------DKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETM 174

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E    L  +       ++DLDL+
Sbjct: 175 LRREGRFELARRCFAHLETQVDLDLL 200


>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 204

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 35/201 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET        +G+  + +   + +   +  D    L    +      +L   L 
Sbjct: 19  IVAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLE 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D  V+ + H   F+    +   G         CT + +R          L   C  L  +
Sbjct: 69  DPEVLKLFHFGRFDIAAMQNAFGAKTAP--VYCTKIASRLVRTFTDRHGLAKLCQELLGT 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +                K    S                   Y   DV    +L  +L  
Sbjct: 127 DIS--------------KQQQSSDWGAAQLTQAQID------YAASDVLYLHQLRDKLNA 166

Query: 180 LSDGERDLWLLDQTINDRGYR 200
           +   E  + +     +    R
Sbjct: 167 MLIREDRMDIAQACFDFLPMR 187


>gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I +    LI   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 40/206 (19%)

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII-------RSSRQTYALRMYLFLITGIDLVD 255
              + ++ E + +    + E+      G          +      +   L    G+    
Sbjct: 10  THKMRQITEQLQKVLPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 256 MSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311
            +E       + +L   +I +    LI   L     A  ++++       DGR+ G +  
Sbjct: 69  KTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA-AQIDSWLTH-EKDGRVHGRVIT 124

Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371
            GA  TGR +        +P                                 RS     
Sbjct: 125 NGA-VTGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVP 160

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDW 397
            G KL+  D +G+E R+LA    ++ 
Sbjct: 161 EGHKLIGCDASGLELRMLAHYMRDER 186


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
          Length = 1461

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
             +         +  +  ++  DE+V  V HN  F+R + +  +GI         T  +A
Sbjct: 744 DGRYVRLKPHHPILDEFKRFFEDESVKKVWHNYGFDRHVLEN-MGICCAGFG-GDTLHMA 801

Query: 101 RTNGLPSS------LKNACLALNF 118
           R      S      L N     N 
Sbjct: 802 RLADASRSGRRTYGLDNLTADHNI 825



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 34/119 (28%), Gaps = 14/119 (11%)

Query: 282  LASSGSAILKLNTLSEAVSSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            L S  ++   +        +  R   R        + TGR S                  
Sbjct: 1353 LQSDATSTTTVLPNPPGRDTPSRAVHRVHCSLNINTETGRLSARR----------HVCCE 1402

Query: 340  LTQTIQALNRGETIADPLGLASDCVRSCIIASN--GKKLVVADLAGIEARVLAWIAGED 396
            +   I A+         L      VR    A    G  LVVAD   +E R+LA +    
Sbjct: 1403 MRLHISAVVPNLQNQPALEKDRYKVRRAFTADTEGGNTLVVADYGQLELRILAHMTNCQ 1461


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L   L +
Sbjct: 20  VAIDTET--------LGLKPHRD--RLCVVQLSAGDGNAHLVQFEKGHYDAPNLTALLVN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H   F+  + ++ LG  + +    CT + A+          LK+ C  L
Sbjct: 70  PAVLKIFHFGRFDIAVMQQYLG--VKTGPVYCTKIAAKLVRTFTERHGLKDLCREL 123


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
          Length = 1758

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 44/226 (19%), Gaps = 78/226 (34%)

Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
                G             ++     +  +  +         AV  K      +     W
Sbjct: 38  YLEWEGQGEPDKPLVKDKYASERRKAKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKW 97

Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570
            +                                            +  +     R    
Sbjct: 98  YSDRWE----------------------------------------EFKVRTLLGRTRPL 117

Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI----------------SRDILCEGM 614
            ++      L+  +++               +Q                  +        
Sbjct: 118 PNISSPDFRLSGHSNRA---------AINTPIQGSAADVAAAAMVAIHKSEA-------- 160

Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659
                 G+ +++ +HDE++ E P         L   LM     WA+
Sbjct: 161 --LRATGFKLLMQIHDEVILEGPRDRSEDAKRLVMELMANP--WAE 202


>gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 104/476 (21%), Gaps = 117/476 (24%)

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
                   +  RG  ID   +  +++     ++ L E       G+         L  + 
Sbjct: 20  RYVATVALMEHRGVPIDTTTLGLMRDNWHDFKQALIEK-TDQAYGVYDKGSFRVHLFEHY 78

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
                I    ++ G L+       +  L    +        +       +   V  DGR 
Sbjct: 79  LGAENIAWPRLASGELQLDRDTFKMMALRHPQLAELRELRKTLAEMRE-IKLTVGRDGRN 137

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R  L  + +              N P   +                     +       R
Sbjct: 138 RTLLSPFNSKTGR----------NQPSTTK--------------------FIFGLPAWAR 167

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
           S I    G  L   D +  E  + A ++G+D   +A                        
Sbjct: 168 SLIKPEPGTALAYLDFSSQEIAIAACLSGDDALWQA------------------------ 203

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
                          Y  G   +   A   GL         +S     D  +     +  
Sbjct: 204 ---------------YASGDP-YIQFAIDAGLA--PVGATKESHKAERDACKVIMLGVQY 245

Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545
                    K  L     E + +  +  +   L  W+            G  +       
Sbjct: 246 GMSAYGMGQKASLHVLEAEDLLQRHKDVY---LTFWRWAERNV-NAGLAGVELHTVFGWK 301

Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605
           +     R  K +                                            +QA 
Sbjct: 302 IRAGKGRDVKENTF--------------------------------------LNWPMQAN 323

Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG 660
             ++L        +    +   VHD I+ E P       V      M K   W  G
Sbjct: 324 GAEMLRLAYIALEEESIVMCAPVHDAILIEAPLDAIDQHVERATHEMQKASGWVLG 379


>gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEEVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 215

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 39/207 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYL 61
           + +D ET        +G+  + +   + L   +  D    L      +      ++L  L
Sbjct: 27  VAVDTET--------MGLNPHRD--RLCLVQLSDGDGHAHLVQVPAGATAADFPNMLAVL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D +V  + H + F+  + + T GI +     ICT + ++          L + C  L  
Sbjct: 77  TDPSVTKLMHFARFDVAILQYTFGITVAPC--ICTKIASKLVRTYTERHGLAHLCREL-- 132

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                              G   S     +             Y   DV     L+ RL 
Sbjct: 133 ------------------LGVELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLE 174

Query: 179 PLSDGE--RDLWLLDQTINDRGYRIDL 203
            L   E  R+L            R+D+
Sbjct: 175 ALLVREGRRELAQACYDFMPTRARLDI 201


>gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I +     I   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKTIDEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQIP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGATIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|149408172|ref|YP_001294606.1| hypothetical protein ORF013 [Pseudomonas phage PA11]
          Length = 624

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/521 (9%), Positives = 116/521 (22%), Gaps = 102/521 (19%)

Query: 55  SDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110
             +  + R+  ++   HN   ++    ++ L I +   + + T  L+           L 
Sbjct: 35  DKMRSFFRNAKIIG-GHNIYRYDIPNIERLLDIKVE-CKLVDTLPLSWYLEPARKRHGLA 92

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEA 169
                    +      E  A+     +   D            + W+     Y + D   
Sbjct: 93  EWGEEFGVPKPKVDDWENLAVEEYIHRCEEDV---KINTKLWERQWKQLSKLYGEPDKVW 149

Query: 170 TRELFKRLIPLSDGE----------------------------------RDLWLLDQTIN 195
               +         E                                       +  +  
Sbjct: 150 KFIDYIMFKMDCAAEQERSRWKLDVVHCKTTLKKLEKLKEEKVEELRLAMPHVPVMASKE 209

Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDED---------IVKLTDGIIRSSRQTYALRMYLF 246
                   +    L E        L+E          +  + D    +      ++ +L+
Sbjct: 210 KPKKMYLKNKPNTLSEQGKAWVALLEEQGLPEDYEGVVEYIKDWKEPNPGSHEQIKSWLY 269

Query: 247 LITGIDLV---DMSEGT--LKSILSHSNITQLAKDLILNRLASSGSAIL--KLNTLSEAV 299
            +  +        ++ T  +K I        L   L     +         KL  L    
Sbjct: 270 SLGWVPETFAYKRNKETGEVKKIEQVQQDKTLGPGLCA---SVKKLYGKEPKLEILDGLS 326

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ-ALNRGETIADPLG 358
               R+                G +    +    +   + LT T++        +     
Sbjct: 327 ILTHRISVLN------------GFLNNVDDEGYVQAKVQGLTNTLRFKHEVVVNLPGVDK 374

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                +R C++A  G +LV +D++ +E R                           +   
Sbjct: 375 PYGADIRGCLVAPKGYELVGSDMSSLEDRCKQHYM------------WPYDPEYVKEMIK 422

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              D                      A    +             +            ++
Sbjct: 423 PDFDPHLDLAVF--------------AGALSSHEVELYKAGFLKKEEEGLVKAIRKVYKS 468

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
            ++        P  A+   +       +  A+  ++  V +
Sbjct: 469 VNYACVYGAGGPRVAITAGVTMDEGYKLVDAYWQRNWSVKR 509


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + +   +  D    +    +      +L++ L D
Sbjct: 22  VAVDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQIAKGQKSAPNLVRLLSD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  + H   F+  +   T G  +      CT + ++      +               
Sbjct: 72  RDITKIFHFGRFDLAILAHTFG--VMPDVVFCTKIASK-LTRTYT-----DRHGL----- 118

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           K   G+ L     K    S     T +          EY   DV     L          
Sbjct: 119 KEICGELLNVNISKQQQSSDWAAETLSRAQI------EYAASDVLYLHRLKDIFEERLKR 172

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           E    +          R +LDL+
Sbjct: 173 EERESVAKACFQFLPMRANLDLL 195


>gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 554

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 98/443 (22%), Gaps = 158/443 (35%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYAL---RMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
              L   I +     + +      +     ++    G  +       L+ I         
Sbjct: 211 LADLAARIGEAVGREV-NPDSPAQVLRAMAWI----GHPVDSTRSWVLERI------DHP 259

Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQF---YGASRTGRWSGCVF 325
              L+L     S           +A        DG   G        G   +GRW+    
Sbjct: 260 VVPLLLRYKELSRLHSANGWAWLDAWVRRRPGPDGTTLGRFHPDYVVGGVVSGRWATRGG 319

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
               +PR                               +R  + A  G  LV AD   +E
Sbjct: 320 GALQIPR------------------------------SLRGAVRADPGWVLVRADAGQLE 349

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            RVLA ++G+D    A A  +                      R   K+  L+  Y   +
Sbjct: 350 PRVLAAVSGDDALAAAAAEEDLYARLAVH----------VGGDRDRAKIGMLSAMYGQTS 399

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                                   +    + +A  +                        
Sbjct: 400 G----------------DAAPLLATMRRLYPRALEYVDS--------------------- 422

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                                  A   + GG + +      P              +P  
Sbjct: 423 ----------------------AARTGEGGGIVRSWLGRTSP--------------VPEG 446

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------ 619
                S   G+            R R  G      +VQA + +     +           
Sbjct: 447 WDAAVSGPGGER-----------RRRAQGRFTRNFVVQATAAEW---ALVLLASLRQRLP 492

Query: 620 ---NGYDIVLTVHDEIVSETPDT 639
               G  IV  VHDE+V   P  
Sbjct: 493 DMPEGAGIVFFVHDEVVLHVPAD 515


>gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 204

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 44/170 (25%), Gaps = 19/170 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L + L D
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEHL 122
             V+ + H   F+        G         CT + +R     +        L       
Sbjct: 70  PNVLKLFHFGRFDIAAMLNAFGATAAP--VYCTKIASRLVRTYTDRHGLAKLLQELLNID 127

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                  +   +      D+               L       +   TRE
Sbjct: 128 I------SKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTRE 171


>gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
 gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
          Length = 214

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P          ++  + L         V      ++     +L + L +
Sbjct: 32  IAIDTETMGLIP----------QRDRLCLVQLCDSSGYVTAIRIEKEQKEAPNLKKLLEN 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           ++++ + H + F+   FK   GID       CT V +                  S    
Sbjct: 82  QSIVKIFHYARFDVAQFKYNFGIDTAP--IFCTKVAS----------KLARTYTGSH--- 126

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                KAL+       +D         N     +    Y   DV     L ++LI +   
Sbjct: 127 ---GLKALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQR 183

Query: 184 ERDLWLLDQTIN 195
           E    +  + +N
Sbjct: 184 EERWEIAQKCMN 195


>gi|326536930|ref|YP_004306337.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
 gi|318054506|gb|ADV35682.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
          Length = 712

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 75/273 (27%), Gaps = 74/273 (27%)

Query: 46  DRTEQSAM---PSDLLQYL-------RDETVMCVAHN-SLFERILFKKTLG------IDI 88
           D      +   P D+L Y+            + V HN   ++     +         ++I
Sbjct: 26  DAFTGEVIEYRPDDVLAYIKALEAEAAKPDGLIVFHNGIKYDIPALDRMKRELTGKRLNI 85

Query: 89  PSKRWICTSVLARTNGL---------------------PSSLKNACLALNFSEHLTKMEE 127
           P K+ + T V++R                           +L+     L   +   K   
Sbjct: 86  PRKKVLDTLVISRLIHANLKETDAGLLRRGIIPGKRYGSHALEAWGYRLGEMKGEYKD-- 143

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE----YCKRDVEATRELFKRLI----- 178
                         +   D T       W+ F E    YC +DV  T +L + L+     
Sbjct: 144 ----------DFKAACREDGTEYVDGMEWEHFNEPMMAYCVQDVRVTTKLTRHLMQDPYY 193

Query: 179 -------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                       E D       +   G+    D   +L   +A ER  L   +V+     
Sbjct: 194 FRDGQGIRALVLEHDAAWTLAQMERNGFPFHKDGAERLYMELAAERSDLLVRLVQTFGSW 253

Query: 232 IRSSRQTYALRMYLFLITGI-----DLVDMSEG 259
                 T      L   TG       +V  ++ 
Sbjct: 254 YEPKGGTEPF---LHPKTGKVLDKYPMVKTAKA 283



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 48/252 (19%), Gaps = 51/252 (20%)

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKD 276
           +      +         +   L            +        TL+ +            
Sbjct: 305 MYTPITHVTFQPTSRPNIIKVLKDAGWEPTEFTDKGAPIVDDETLEGVEVADENKMECIK 364

Query: 277 LILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
           LI   L                L    + DG + G++   GA  TGR +        +P 
Sbjct: 365 LIQRYLMIQKRIGQLAEGDKAWLRYCETEDGFIHGSINPNGA-VTGRATHSYPNMGQVP- 422

Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-----SNGK---KLVVADLAGI 384
                                           RS   A       G         D +G+
Sbjct: 423 ----------------------SAKAPFGPECRSLFGAIYARHIPGWENVVQAGVDASGL 460

Query: 385 EARVLAWIAG--------EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           E R L             +            +       A     +      R   K   
Sbjct: 461 ELRCLGHFGAKYDGGGYVDQVLNGDVHWANAVAAGIAKDAVRDKENHQHDRWRDNAKTFI 520

Query: 437 LALGYQGGAKVF 448
            A  Y  G    
Sbjct: 521 YAFLYGAGDAKI 532


>gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA]
 gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei]
          Length = 842

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 18/186 (9%)

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR-LRGTLQFYGASRTGRWSGC 323
                  +   + I     S       +  L + +  + + +       GAS TGR S  
Sbjct: 669 EKEKEKIKQIINNIKLYRESKKLFQNYIENLPKHIQKNTKKIHCNFNQLGAS-TGRLSCD 727

Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383
               QN+  + R    L          +         +              L+  D   
Sbjct: 728 QPNLQNIHSKFRCTISLKFNELKPTSIQKQDIKNKSVNKN------------LLTFDYKQ 775

Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
           +E  V+A+++ ++  +K   N +    T          ++V+KE R + K +   + Y  
Sbjct: 776 MELFVMAYLSFDNQLLKMLNNSDVFVETKVL----FNTNEVTKELRRMTKTVIYGILYGQ 831

Query: 444 GAKVFK 449
                 
Sbjct: 832 SENGLA 837


>gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis]
 gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 204

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 26/180 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + + +D ET          +     +  + +      +    L         P +L+  L
Sbjct: 18  NTVAVDTET----------MGLVCRRDKLCVVQLCDSNGETHLVKFLGSYQAP-NLVSVL 66

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D ++  + H + F+  + +  LG+   +    CT + ++          LK  C     
Sbjct: 67  SDSSITKIFHFARFDIAVIRYYLGVW--ATPCYCTKIASKLVRTYTDHHGLKELC----- 119

Query: 119 SEHLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                ++   K   + +      ++   +           L     K D    RE  + L
Sbjct: 120 ----YELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQEL 175


>gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 32/169 (18%)

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285
             I +      +   L    G+     +E       + +L   ++ +     +   +   
Sbjct: 47  VTIFNPGSRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQ 103

Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              + ++++  +AV  DGR+ G +   GA  TGR +        +P              
Sbjct: 104 KR-VAQIDSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP-------------- 147

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                              RSC     G  LV  D +G+E R+LA    
Sbjct: 148 ---------AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYME 187


>gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
 gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 58/204 (28%), Gaps = 28/204 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           +  D ET        +G+  + +   + L      +  V +    +      +L + +  
Sbjct: 25  IAADTET--------MGLLPWRD--RLCLVQLCDAEGIVTVVRIAKGQREAPNLKKLMEA 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ + H + F+    K  L I +      C+ + +                       
Sbjct: 75  SNIVKIFHFARFDMATLKYHLDIHVAP--VFCSKIAS----------KLARTYTGKH--- 119

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K L+    +  +D         N     +    Y   DV       ++LI +   
Sbjct: 120 ---GLKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRYLISAREKLITMLQR 176

Query: 184 ERDLWLLDQTINDRGYRIDLDLVL 207
           E    L  +        + LDL+ 
Sbjct: 177 EDRWQLAQECFQCLPVIVSLDLLQ 200


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 36/206 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET          +     +  + L   +  +    L       + P +L + + D
Sbjct: 20  VAVDTET----------MGLVCRRDRVCLVQLSAGNGDAHLVKFDGDYSAP-NLRKVISD 68

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H + F+    +   G  + +    CT + +R          LK+ C  L    
Sbjct: 69  PGVLKIFHFARFDVAAIRH--GFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYEL---- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   +     +             Y   DV     + K+L  +
Sbjct: 123 ----------------LGVKINKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMM 166

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
            + E    L +        R +LDL+
Sbjct: 167 LEREEKQELAEACFKFVPVRAELDLL 192


>gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   ++ +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDVPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            +++        DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDPWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +   ++I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+ A    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMPAHYMRDER 186


>gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1]
 gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1]
          Length = 205

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 46/197 (23%), Gaps = 29/197 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P           +  + +   +  D    +           +L+  LR+
Sbjct: 21  VAIDTETLGLNP----------HRDRLCVVQLSPGDGTADVVQIAAGQRRAPNLVALLRN 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  + H + F+  +   + G  +      CT + +R                      
Sbjct: 71  RRITKLFHYARFDIAVLYHSFG--VMPDPVFCTKIASRL-----------------TRTY 111

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +     Q      EY   DV     L   L      
Sbjct: 112 TDRHGLKDICYELLQVNLSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMR 171

Query: 184 ERDLWLLDQTINDRGYR 200
           +               R
Sbjct: 172 DGRAREAQACFKFLPTR 188


>gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
          Length = 381

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 33/193 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +  D+E  S        +  Y E   + L  +A       +         P  L     
Sbjct: 29  IVACDLEADS--------MHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFA 76

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  +  V H + ++     +  G+++       T +  +  G              +  L
Sbjct: 77  NAAIRKVFHGADYDIRSLHRDFGMEVN--NLFDTMIACQLLGE--------REFGLAAQL 126

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            K         RF         Y     +         EY  +D     EL  +L    +
Sbjct: 127 RK---------RFGVELDKQ--YQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLE 175

Query: 183 GERDLWLLDQTIN 195
            +     +++   
Sbjct: 176 AKGRRGWVEEECE 188


>gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 55/215 (25%), Gaps = 37/215 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P              + L         V             +L + + D
Sbjct: 27  IAVDTETMGLIPGRD----------RLCLIQLCDPSGFVTAIRIFRGQTEAPNLKKVMED 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           E +  V H + F+     +T GI        CT + ++          LK+    L    
Sbjct: 77  ERIEKVFHFARFDVAQLSQTFGIATQP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 130

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                 EG  L         D         N V        Y   DV     +  +LI +
Sbjct: 131 ------EGIEL---------DKTAQSSDWGNAVNLTPKQLSYAANDVRYLLSVRDKLIVM 175

Query: 181 SDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIA 214
              E                I     + + +++  
Sbjct: 176 MQREERWE--LAQKCFSCIPIFTALDLQQYKDIFE 208


>gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 166

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L  + G+     +E       + +L   +I +     I   L     A
Sbjct: 15  FNVGSRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA 71

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 72  -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 111

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 112 ------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 154


>gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 565

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 111/383 (28%), Gaps = 79/383 (20%)

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-LTKMEEGKALIARFCK 137
           ++    GI +       T           S  +             ++  G   +     
Sbjct: 94  VWAGAHGIPVA------TM-------PTPSGGDLFDFTGSDGIGPEELVRGDGHLR---- 136

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
            +  +  +  T    ++  +   E   R  +    L  R++     E    L+   + + 
Sbjct: 137 -ADAASGWLETDERLLRWAEAALECAVRQRDRAESLGARIVGTIHSESAAALMCLELEEG 195

Query: 198 GYRIDLDLVLKLQELIA------------QERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           G  +D  ++ +L    A              R++  E +  +        R    +R  L
Sbjct: 196 GLPVDRAVMERLIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDLRNPLQVRDML 255

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSSDGR 304
             + G+D+ +  +     +L          D +L    +   A       L + V  D R
Sbjct: 256 AGV-GVDVPNTRKW----VLDAYRHVHPVVDALLAWRKAERIATTYGYRWLDQCVGPDDR 310

Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
           LRG       +  GR +       NLP                                +
Sbjct: 311 LRGGWTACDGAA-GRMTAEN-GLHNLP------------------------------AAL 338

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS + A  G   V ADL  IE RVLA ++G+    +A    +             P+   
Sbjct: 339 RSGVAAHPGHVFVRADLGQIEPRVLAVVSGDPAFAEATRADDLYA----------PVASR 388

Query: 425 SKEQRAIGKVMELALGYQGGAKV 447
               R + K+  LA  Y   +  
Sbjct: 389 LGVDRPVAKIAVLAAMYGQRSGA 411



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594
             ++     A    +     +     ++P+ R L      G    L+ A  +  R     
Sbjct: 424 PVAMGLLDRAYDTGVRGEPLRTFGGRLIPTGRFLA-QSPVGTNPALDAARGRFAR----- 477

Query: 595 GKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                 I+Q  + ++               G  IVL +HDE++   P++    V  L   
Sbjct: 478 ----NAIIQGAAAELFKAWAATVRALGTPMGAQIVLCLHDELLVHAPESRAAEVAALVDQ 533

Query: 651 -MTKNP-SWAKGLPLK--AEGYEAKRY 673
            +      WA G P++  A+     R+
Sbjct: 534 SLADASRRWAAGAPVRFVADTSIIARW 560


>gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRLLAHYMRDER 186


>gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +   ++I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
 gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
          Length = 207

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 48/207 (23%), Gaps = 31/207 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P           +  + +   +  D    +    +      +L+  L D
Sbjct: 23  IAVDTETLGLVP----------RRDRLCVVQLSPGDGSADVIQIAKGQKRAPNLVALLTD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H   F+  +     G+        CT + +R                      
Sbjct: 73  RKRRKLFHYGRFDIAVLYNAFGVTTEP--VFCTKIASRL-----------------TRTY 113

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   + R       S     +            EY   DV     L  +L      
Sbjct: 114 TDRHGLKDVTRELLEVDLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERLQR 173

Query: 184 ERDLWLLDQTINDRGYR--IDLDLVLK 208
           +               R  +DL    +
Sbjct: 174 DDREAHAKACFEFLPTRAKLDLMGWEE 200


>gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 38/205 (18%)

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII-------RSSRQTYALRMYLF---LITGID 252
              + ++ E + +    + E+      G          +      +   L    +   + 
Sbjct: 10  THKMRQITEQLQKVFPPIAEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQ 69

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +    + +L   +I +    +I   L     A  ++++       DGR+ G +   
Sbjct: 70  TEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA-AQIDSWLTH-EKDGRVHGRVITN 125

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           GA  TGR +        +P                                 RS      
Sbjct: 126 GA-VTGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPE 161

Query: 373 GKKLVVADLAGIEARVLAWIAGEDW 397
           G KL+  D +G+E R+LA    ++ 
Sbjct: 162 GHKLIGCDASGLELRMLAHYMRDER 186


>gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 51/237 (21%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236
              G+ +D++    L + I  + +++ E + K+                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
               +   L  + G+     +E       + +L   +I +     I   L     A  ++
Sbjct: 61  SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
           ++       DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                       RS      G KL+    +G+E R+LA    ++            +
Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCGASGLELRMLAHYMRDERYTNEILMRRHPH 208


>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
 gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
          Length = 204

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 51/200 (25%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L   L D
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGNAHLVQIAKGQTEAPNLCALLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+      T G         CT + +R          L   C  L    
Sbjct: 70  PHVLKLFHYGRFDIAALLNTFGAKAAP--VYCTKIASRLVRTYTDRHGLAKLCQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T             Y   DV    +L   L  +
Sbjct: 124 ----------LSVDISKQQQSSDWGAETLTKAQID------YAASDVLHLHKLRDVLNQM 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
              E  + L          R
Sbjct: 168 LIREGRIELAQACFEFLPTR 187


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 27/196 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID ET    PL             + L       E + L      +    +L+  L
Sbjct: 24  KYIAIDTETTGLDPLKD----------KLCLIQIC-AKEKIFLIKYNNSNQ--KNLIGIL 70

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALN 117
           +   ++ + H++ F+     K L I       +CT + A+      + +SLK      LN
Sbjct: 71  QCSKIIKIFHHANFDLRFLMKNLKIY-NINNVVCTKIAAKLLNGIEIENSLKKLLRKYLN 129

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +         K L       S ++   +  +        L   +     E  +     L
Sbjct: 130 INID-------KKLQK--SNWSAENLTKEQIQYATYDVIYLEKLWRALKAELIKANLYSL 180

Query: 178 IPLSDGERDLWLLDQT 193
                       +   
Sbjct: 181 AEECFKYLPTNAILHN 196


>gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I +     I   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKTIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 207

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 34/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  Y     + L       + V +    ++     +L Q L  
Sbjct: 25  IAVDTET--------MGL-IYQRD-RLCLVQLCDPQDRVTVIRIDKKQTEAPNLKQLLEA 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           +TV+ V H + F+  + ++ L I +      CT + ++          LK+  + L    
Sbjct: 75  QTVLKVFHFARFDLAILRQNLDIYVQP--VFCTKIASKLARTYTNRHGLKDLVMDL---- 128

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      +                 ++          Y   DV     + ++LI +
Sbjct: 129 ---------EQVELDKSSQSSDWGNPNNLSD------EQLRYAANDVRYLLSVRQKLITM 173

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              E    L  +        + LDL+
Sbjct: 174 LQREERWQLAQECFEALSVMVSLDLL 199


>gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
 gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
          Length = 628

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 82/293 (27%), Gaps = 54/293 (18%)

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
           V+   +    L  +             ++    RID +L+   Q +   + + L++   +
Sbjct: 276 VKICYDWQSCLYHMIRFYMKEIQ-TAVLDITPIRIDTELLRDYQPIFEAKLEALEKKAHQ 334

Query: 227 LTDGII---------------RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
           +   I                 S +    +   LF    +D                   
Sbjct: 335 VYCIIFIKRLRQSILQISGYSFSLQSPKQIETILFEKLKLDQ------------------ 376

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                L L        ++   + +   + S             S  G         Q +P
Sbjct: 377 --VLKLNLVLKTKKKQSLSTSDEVLNKIKST------------SIDGILRLMKKNMQAIP 422

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
           +           I+         +     S   R  II      LV  D   IE R+LA 
Sbjct: 423 KAMID----FGGIEDTKIFGENENETYKGSYSPRDMIITKKNYSLVSVDFQAIELRLLAH 478

Query: 392 IAGEDWKIKAFANGEDIYVTTYAK--AFNTPIDKVSKEQRAIGKVMELALGYQ 442
            + +   ++ F     I + T+     FN  ID +S+ +    K +  ++ Y 
Sbjct: 479 FSNDSMLLQIFNEHPTINIYTWLATFWFNKNIDDISQAEFDQAKEICYSILYG 531


>gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 23/142 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET          +     +  + +   +  D    +     +     +L+  L +
Sbjct: 23  IAVDTET----------LGLIPRRDRLCVVQLSPGDGTADIIRIAAEQKNAPNLVTMLAN 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSL-KNACLALNFS 119
           ET   + H + F+  +   T G+ +      CT + +R          L  N    L   
Sbjct: 73  ETQEKIFHYARFDIAVLFYTFGVRVKP--IFCTKIASRLTRTYIDRHGLKDNLRELLGVD 130

Query: 120 EHLT-------KMEEGKALIAR 134
                      + +     +  
Sbjct: 131 ISKKQQLSDWSEDDLSHEQLQY 152


>gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
 gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
          Length = 214

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 28/201 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID ET    P          ++  + L         V             +L Q L +
Sbjct: 32  LAIDTETMGLVP----------QRDRLCLVQLCDPSGYVTAIRIERGQTEAPNLKQLLEN 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + ++ + H + F+   FK      + +    CT V +                  S    
Sbjct: 82  KNIVKIFHYARFDVGQFK--YNFSVETDPIFCTKVAS----------KLARTYTGSH--- 126

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K+L+       +D         N     +    Y   DV    +L ++LI +   
Sbjct: 127 ---GLKSLVQELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKR 183

Query: 184 ERDLWLLDQTINDRGYRIDLD 204
           E    +  + +      ++LD
Sbjct: 184 EERWEIAQKCMKVIPLFVELD 204


>gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001]
 gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001]
          Length = 224

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 56/204 (27%), Gaps = 34/204 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L     D + V         +    L   + +
Sbjct: 36  LAVDTE--------AMGLIHGRD--RLCLVQICDDADNVCCIRLRRGQSSAPHLQALMEN 85

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSE 120
             +  V H + F+     + LGI +      CT +   LART      LK+    L    
Sbjct: 86  AAIEKVFHFARFDVAALAENLGIAVHP--IFCTKIGSRLARTYSPRHGLKDVVQEL---- 139

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L  R                      +    Y   DV    +   RL  +
Sbjct: 140 ------VGVELDKRAQSS---------DWGEVDDLSEAQLAYAAGDVRYLLQARDRLERM 184

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
              E    L  +         DLD
Sbjct: 185 LRREERWELAQRCFTCLPVFADLD 208


>gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L    I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIGIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 34/133 (25%), Gaps = 26/133 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P              + L   A   + V L D    +   +DL      
Sbjct: 51  VAVDTETTGLDPARD----------RVRLIQVA-AGQDVALIDVFAFADPVADLRPLFAA 99

Query: 64  -ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----------SSL-KN 111
                 V HN  F+          +    +   T + +R                 L   
Sbjct: 100 LADKEQVGHNLQFDLRFLA---PFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDA 156

Query: 112 ACLALNFSEHLTK 124
           A   L  S   ++
Sbjct: 157 AARELGRSLDKSE 169


>gi|307105222|gb|EFN53472.1| hypothetical protein CHLNCDRAFT_136747 [Chlorella variabilis]
          Length = 911

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 28/174 (16%)

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               R +  L   +   G   D  L+ +   +      +++E+  +L      +      
Sbjct: 670 LAATRAVAALLAQMEGAGLGFDPWLLREAGRVARSHMSRIEEECAELAGRPF-NPASPQQ 728

Query: 241 LRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
           L   L+ +  +                T +  L           L+L   A    +   +
Sbjct: 729 LAEVLYSVLKLPPPTGRGRSSAKTHLRTDEQALEALRPLSPLPGLVLEYRALQNFSSKWV 788

Query: 293 NT--------------LSEAVSSDG----RLRGTLQFYGASRTGRWSGCVFQPQ 328
                              A    G    R+        ++ TGR S      Q
Sbjct: 789 EADWCRAAAAGFESADAYAAARPGGGGWPRVHCCWHQT-STATGRLSSSAPNLQ 841



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 621 GYDIVLTVHDEIVSETPDTPYF---SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           G  +V+ +HDE++ E              L  +M         +PL  +    +++
Sbjct: 851 GAVLVVHLHDELLVEVDARQVDGAWVAQELRRVMEGVVQ--LRVPLAVKVKAGEQW 904


>gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +   ++I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807515|gb|ABR13561.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLT-REKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807560|gb|ABR13582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIANEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807552|gb|ABR13578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNERVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
 gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
          Length = 210

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 42/194 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-------WDDEPVKLWDRTEQSAMPSD 56
           L ID ET     +             + L  +         DD+ V L    +Q     +
Sbjct: 20  LAIDTETMGLNLIRD----------RLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRN 69

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113
           L + L D+    + H + F+    +  LG+ +      CT+V ++          LK+ C
Sbjct: 70  LKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLN--NIFCTNVASKLVRTYTDSHGLKDLC 127

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L              L  +  K    S     +  +  +      EY  +DV     +
Sbjct: 128 REL--------------LGIQISKQCQSSDWGGQSLTSDQE------EYAAKDVVYLHRI 167

Query: 174 FKRLIPLSDGERDL 187
              L  +   E+ L
Sbjct: 168 KNILEEMLIREQRL 181


>gi|159038749|ref|YP_001538002.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917584|gb|ABV99011.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
          Length = 566

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 68/259 (26%), Gaps = 62/259 (23%)

Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305
           F   G+++ +     L+ +         A  L+L                 +A   DGR 
Sbjct: 251 FARVGVEVPNTRSWVLRGV------DHPAVPLVLEYKELYRIWTAHGWAWRDAWVRDGRF 304

Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365
           R      G   +GRW+        +P+                               +R
Sbjct: 305 RPEYVPGGV-VSGRWATRGGGALQIPK------------------------------VIR 333

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
             ++A  G  LVVAD   +E RVLA ++G+     A   G+                   
Sbjct: 334 RAVVADPGWTLVVADAGQLEPRVLAAVSGDTRLAAAAGAGDLYAALARDAFGG------- 386

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              RA  KV  L   Y                     S          ++  A ++    
Sbjct: 387 --DRARAKVALLGAMYGQTGG----------------SAAPALEVLRRNYPAAFAYVESA 428

Query: 486 QDQYPEFAVKDKLIGTACE 504
                   +    +G  C 
Sbjct: 429 ARSGESGGLVRSWLGRTCP 447



 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 39/159 (24%), Gaps = 27/159 (16%)

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              + +           G +     +  R  +           E  A   + GG + +  
Sbjct: 387 DRARAKVALLGAMYGQTGGSAAPALEVLRRNYPAAFAY----VESAARSGESGGLVRSWL 442

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
               P   +   +                    +         +  R R  G      ++
Sbjct: 443 GRTCPPGSVGVDEE-------------------EPVPAGGEGGRSARARARGRFTRNFVI 483

Query: 603 QAISRDILC--EGMKNATKNG--YDIVLTVHDEIVSETP 637
           QA + +       M      G   ++V   HDE++   P
Sbjct: 484 QATAAEWAATLLAMLRGELAGSDAELVFFQHDEVIVHCP 522


>gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 206

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L+  L D
Sbjct: 22  VAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNRAPNLVTLLED 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
           + +  + H   F+  +   T    +      CT + +   RT      LK  C  L
Sbjct: 72  KKITKIFHFGRFDLAILAHTF--AVMPDVVFCTKIASKLTRTYTDRHGLKEICSEL 125


>gi|148807524|gb|ABR13565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   ++ +     I   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPE--AKTIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
 gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
          Length = 388

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 35/195 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D+E  S        ++ Y E+A +        +    + D      +   L   L
Sbjct: 35  KCIAVDLEADS--------MFHYQEKACLLQI---TSNGLNYIVDPLCDCDV-KALAPIL 82

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            ++ +  + H + ++     +  GI++       T V AR  G P   L           
Sbjct: 83  ENDEIQKIFHGADYDVRCLFRDFGIELH--NLFDTQVAARFLGEPQTGLAPL-------- 132

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              +   G  L  ++ K +    P                 Y   D     EL + L   
Sbjct: 133 --LESRFGVQLEKKYQKKNWSLRPLPPE----------MMAYAANDTVHLLELAEILKKE 180

Query: 181 SDGERDLWLLDQTIN 195
              +  L+ +++   
Sbjct: 181 LVEKDRLFWVEEECE 195


>gi|148807526|gb|ABR13566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   ++ +     I   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPE--AKTIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
 gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
          Length = 206

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 62/210 (29%), Gaps = 37/210 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    P           +  + +   +  D    +       +   +L   + D
Sbjct: 22  VAVDSETLGLNP----------HRDRLCVVQLSPGDGSADVVQIARGQSEAPNLAALMTD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            +   + H + F+  + +  L I +      CT + ++          LK+    L    
Sbjct: 72  TSKPKIFHFARFDVAVLQHYLNIRVSP--VWCTKIASKLVRTYTDRHGLKDITREL---- 125

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S     T ++   A      Y   DV     L +RL  +
Sbjct: 126 ----------LGVELSKQQQSSDWAAETLSDAQLA------YAASDVLHLHALKERLEMM 169

Query: 181 SDGERDLWLLDQTINDRGYR--IDLDLVLK 208
            + E    + +   +    R  +DL    +
Sbjct: 170 LEREERTHIAEACFDFLPTRAELDLKGWEE 199


>gi|158345050|ref|YP_001522815.1| hypothetical protein PPLKD16_gp24 [Pseudomonas phage LKD16]
 gi|114796403|emb|CAK25959.1| hypothetical protein [Pseudomonas phage LKD16]
          Length = 348

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 30/217 (13%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMP 54
             L +DIET              VG+        I      W   + V   D  +   + 
Sbjct: 94  RVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWLHSDEVIYMDC-QGDPLD 152

Query: 55  S-----DLLQYLRDETVMCVAHNSL-FER-ILFKKTLGIDIPSKR---WICTSVLARTNG 104
                  L + L +  ++ V  N   F+   +  +     +P  R    I T ++A+   
Sbjct: 153 DLHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQF 211

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
             +S K     +  +    K    K L  +F     D         ++ +AW+    Y  
Sbjct: 212 AFTSRKL--EYMTHNACTIK----KRLHGKF--PGFDLW--AACLQDNPEAWEEMRLYNI 261

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
            DV +  EL+  + P   G      +     +   R 
Sbjct: 262 DDVRSMEELYILMRPWFVG-HPNVAVYFNDEEPTVRC 297


>gi|238060029|ref|ZP_04604738.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237881840|gb|EEP70668.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 554

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 71/290 (24%), Gaps = 63/290 (21%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           +   +L   I +        +     L    F   G++L +     L+ +         A
Sbjct: 204 RRLAELAARIAEAFGVRQVHADSPAELLR-AFARAGVELPNTRAWVLRGV------DHPA 256

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
             L+L                 +A    GR        G   +GRW+        +P+  
Sbjct: 257 VPLVLEHKELYRIWTAHGWAWRDAWVRGGRFHPEYVPGGV-VSGRWATRGGGALQIPK-- 313

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                        +R  ++A  G +LVVAD   +E RVLA ++ 
Sbjct: 314 ----------------------------VIRRAVVADPGWRLVVADAGQLEPRVLAAVS- 344

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454
                                      D    + R   KV  L   Y     +       
Sbjct: 345 -------GDARLAAAGGAGDLYAALARDSFGGD-RPRAKVALLGAMYGQTGGM------- 389

Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                         T    ++  A ++            +    +G  C 
Sbjct: 390 ---------AVPALTVLRRNYPTAFAYVEAAARTGEAGGLVRSWLGRTCP 430



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 40/171 (23%), Gaps = 21/171 (12%)

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
              + +           G          R  +           E  A   + GG + +  
Sbjct: 370 DRPRAKVALLGAMYGQTGGMAVPALTVLRRNYPTAFAY----VEAAARTGEAGGLVRSWL 425

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
               P         D   + P        D +G  +    +  +  R           ++
Sbjct: 426 GRTCPPGAAGFADGDDAGIDPE----AAVDPQGPRARAARSRGRFTR---------NFVI 472

Query: 603 QAISRDI--LCEGMKN--ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
           QA + +               +  ++V   HDE++   P      V     
Sbjct: 473 QATAAEWASTLLATLRTALAGSDAELVFFQHDEVIVHCPAGQADEVAEAIR 523


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET               ++  + +   +  D    +    +      +L++ L D
Sbjct: 20  VAIDSETMGLN----------LQRDRLCVVQLSAGDGHAHVVHYPKPEWNSPNLVRMLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V  + H + F+  + ++ LG  +      CT + +   RTN    SLK  C       
Sbjct: 70  SKVTKLFHFARFDVAMIRRYLG--VRCTPVFCTKIASKLTRTNTEGHSLKVLCKEF---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S            A      Y   DV    +L  RL  L
Sbjct: 124 ----------LNIDLSKLQQSSDWGAPELTADQLA------YAASDVLYLHQLKDRLDAL 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
            D E    L +        R
Sbjct: 168 LDREGRRALAEACFAFLPDR 187


>gi|148807539|gb|ABR13572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       +GR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKNGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|47934794|gb|AAT39835.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L  + G+     +E       + +L   +I +     I   L     A
Sbjct: 48  FNVGSRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA 104

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 144

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 145 ------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 187


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
             QNLPR               +                     A N   LV  D +  E
Sbjct: 2   NLQNLPRSISDPTRFDYAFPIKDYFGPNK---------------ARNHDTLVFTDYSAQE 46

Query: 386 ARVLAWIAGEDWKIKAFANGEDI-YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           AR+   +AG++  I AF +     +  T +  F  P+++V+K+ R   K +   L Y   
Sbjct: 47  ARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKAVTFGLMYGED 106

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
              F         ++            +    + +      Q         D        
Sbjct: 107 PNSFAGKN-----NMPIEESEQLFEDYYAGKPKIKELIDIAQSSATRDGYIDVPGSGFRR 161

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
            ++  W A           L +    +VQ G +   ++         R +  D +I
Sbjct: 162 NLEDVWSADF---KTKNGALRQALNTMVQGGSAYLTQKALITINQYFRAYDIDAYI 214


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 37/216 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + +   +  D    L           +L + L D
Sbjct: 20  VAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTSAPNLERLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V+ + H   F+    K+  G  + ++   CT + +   RT      L      L    
Sbjct: 70  PQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGL----KYLLLE- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +     +      +Y   DV     L   L   
Sbjct: 123 ---------------LVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              +G  +L             +DL    +  ++  
Sbjct: 168 LLREGRMELAQRCFDFLPTRAELDLMGWDEPNDIFH 203


>gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 45/172 (26%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQMSGGDGHSHIVQVEKGQTEAPNLCAMLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN C  L   +
Sbjct: 70  PEVLKLFHFGRFDIAALYHAFGALAAP--VYCTKIASRLVRTYTDRHGLKNLCQELLGID 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      ++               L       D    RE
Sbjct: 128 IS--------KQQQMSDWGAETLTEAQLDYAASDVLYLHQLRAALDARLERE 171


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 56/219 (25%), Gaps = 42/219 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + +   +  D    L           +L + L D
Sbjct: 20  VAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTSAPNLERLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V+ + H   F+    K+  G  + ++   CT + +   RT      L      L    
Sbjct: 70  PQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGL----KYLLLE- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +     +      +Y   DV     L   L   
Sbjct: 123 ---------------LVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
              E         +       D        +L+  +   
Sbjct: 168 LLREGR-------MELAQRCFDFLPTRAELDLMGWDEPN 199


>gi|33300835|ref|NP_877463.1| hypothetical protein phiKMVp24 [Pseudomonas phage phiKMV]
 gi|195546667|ref|YP_002117748.1| hypothetical protein PT5_gp26 [Pseudomonas phage PT5]
 gi|195546729|ref|YP_002117807.1| hypothetical protein PT2_gp28 [Pseudomonas phage PT2]
 gi|33284806|emb|CAD44215.1| hypothetical protein [Enterobacteria phage phiKMV]
 gi|158187628|gb|ABW23105.1| conserved hypothetical phage protein [Pseudomonas phage PT5]
 gi|165880738|gb|ABY70993.1| conserved hypothetical phage protein [Pseudomonas phage PT2]
          Length = 348

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 27/195 (13%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDR----TEQ 50
             L +DIET              VG+        I      W   + V   D      + 
Sbjct: 94  KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHTDEVIYMDCQGAPLDD 153

Query: 51  SAMPSDLLQYLRDETVMCVAHNSL-FER-ILFKKTLGIDIPSKR---WICTSVLARTNGL 105
             +   L + L +  ++ V  N   F+   +  +     +P  R    I T ++A+    
Sbjct: 154 LHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQFA 212

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +S K     +  +    K    K L  +F     D         ++ +AW+    Y   
Sbjct: 213 FTSRKL--EYMTHNACTIK----KRLHGKF--PGFDLW--AACLQDNPEAWEEMRLYNID 262

Query: 166 DVEATRELFKRLIPL 180
           DV +  EL+  + P 
Sbjct: 263 DVRSMEELYILMRPW 277


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET               ++  + +   +  D    +    +      +L++ L D
Sbjct: 20  VAIDSETMGLN----------LQRDRLCVVQLSAGDGHAHVVHYPKPEWNSPNLVRMLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V  + H + F+  + +K LG+        CT + +   RTN    SLK  C       
Sbjct: 70  PKVTKLFHFARFDVAMIRKYLGVRCNP--LFCTKIASKLTRTNTEGHSLKVLCKEF---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S            A      Y   DV    +L  RL  L
Sbjct: 124 ----------LNIDLSKLQQSSDWGAPELNADQLA------YAASDVLYLHQLKDRLDML 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
            D E    L +        R
Sbjct: 168 LDREGRRALAEACFAFLPDR 187


>gi|148807585|gb|ABR13593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 61/205 (29%), Gaps = 38/205 (18%)

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII-------RSSRQTYALRMYLF---LITGID 252
              + ++ E + +    + E+      G          +      +   L    +   + 
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGERLKDKVTEFNVGSRKQIAERLEGVGVKFKLQ 69

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
               +    + +L   +I +    ++   L     A  ++++       DGR+ G +   
Sbjct: 70  TEKGAIIVNEKVLEGIDIPE--AKMVYEYLMLQKRA-AQIDSWLTH-EKDGRVHGRVITN 125

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           GA  TGR +        +P                                 RS      
Sbjct: 126 GA-VTGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPE 161

Query: 373 GKKLVVADLAGIEARVLAWIAGEDW 397
           G KL+  D +G+E R+LA    ++ 
Sbjct: 162 GHKLIGCDASGLELRMLAHYMRDER 186


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 37/216 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + +   +  D    L           +L + L D
Sbjct: 20  VAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTSAPNLERLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120
             V+ + H   F+    K+  G  + ++   CT + +   RT      L      L    
Sbjct: 70  PQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGL----KYLLLE- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +     +      +Y   DV     L   L   
Sbjct: 123 ---------------LVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
              +G  +L             +DL    +  ++  
Sbjct: 168 LLREGRMELAQRCFDFLPTRAELDLMGWDEPNDIFH 203


>gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
 gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
          Length = 203

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L+  L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQMSGGDGHAHLVQVAKGQTSAPNLVAMLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + ++          LK          
Sbjct: 70  PDVLKLFHFGRFDIAALMNAFGARTAP--VYCTKIASKLVRTFTDRHGLKVL-------- 119

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              +   G        K    S     T ++          Y   DV     L ++L  +
Sbjct: 120 --LQDLVGVD----VSKHQQQSDWGAETLSDAQLD------YAASDVLHLHRLREKLDEM 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
              E    +     +    R
Sbjct: 168 LAREGRTMIAQACFDFLPTR 187


>gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84]
 gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84]
          Length = 208

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 55/206 (26%), Gaps = 35/206 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET          +     +  + +   +  D    +       +   +L+  L D
Sbjct: 24  IAIDTET----------LGLIPRRDRLCVVQLSPGDGTADIIRIASGQSQAPNLVAMLAD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            T   + H   F+  +   T G+   +    CT + +R          LK+         
Sbjct: 74  TTRQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLCRTYTDRHGLKD--------- 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L          +     +     +      EY   DV     L  +L   
Sbjct: 123 ---------NLKELLEVDISKA--QQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTAR 171

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206
              +  +   +        R  LDL+
Sbjct: 172 LVRDGRMEHAEACFAFLPTRAKLDLL 197


>gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37]
 gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37]
          Length = 204

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 35/184 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L           +L + L D
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSAGDGNAHLVQVARGQTEAPNLSRLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN    L   +
Sbjct: 70  PDVLKLFHYGRFDIAAMYNAFGALAAP--VYCTKIASRLVRTYTDRHGLKNLTQELLGVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                           K    S     T  +         +Y   DV     L   L  +
Sbjct: 128 IS--------------KQQQSSDWGAETLTDAQ------KDYAASDVLHLHRLRTALNAM 167

Query: 181 SDGE 184
            + E
Sbjct: 168 LERE 171


>gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
 gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
          Length = 309

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 79/276 (28%), Gaps = 58/276 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAMPSDL 57
            L++D E           V  Y  +  ++L         +      L+D  +Q  + +  
Sbjct: 22  ILWLDTE-----------VADYKNKPRLSLIQVLTTPNEIKSDHLYLFDVLDQPELTTLF 70

Query: 58  LQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----RTNG--LPSSLK 110
           ++  + +  +  V HN+ ++  L  K       SK   CT V+A              LK
Sbjct: 71  IEEIMANPAIEKVFHNANYDLKLLGKK-----QSKNVTCTLVMAKKIPYYLLPVPNYQLK 125

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                L                    +               ++  Q+   Y  +  +  
Sbjct: 126 TLATQLG------------DFTNIDKQEQSSDWGQRPLTEKQLEYAQMDVVYLAQIHQCL 173

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +L     P    E                 DL+ +    + IA + K+LD +I  + D 
Sbjct: 174 LKLQPLASPDPTTE-----------------DLNKLATRYQEIAHDWKQLDSEITHIQDR 216

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           + ++ +     +   F           + T   +  
Sbjct: 217 LKQAMKTQQVDQTDSF-KLSSSQRKTLKTTFAQLSE 251


>gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
 gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
          Length = 204

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 50/194 (25%), Gaps = 27/194 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN C  L   +
Sbjct: 70  PEVLKLFHFGRFDIAALYHAFGALTAP--VYCTKIASRLVRTYTDRHGLKNLCQELLGVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE----LFKR 176
                        +      ++               L       D    RE    L + 
Sbjct: 128 IS--------KQQQMSDWGAETLSEAQLDYAASDVLYLHRLREALDGRLAREGRADLAQS 179

Query: 177 LIPLSDGERDLWLL 190
                     L L+
Sbjct: 180 CFDFLPTRARLDLV 193


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 53/201 (26%), Gaps = 37/201 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + L   +  D    L           +L + L D
Sbjct: 20  VAIDTET--------MGLDPRRD--RLCLVQLSSGDGNAHLVQIARGQTSAPNLEKLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
            +V+ + H   F+    K   G+        CT + A+          LK     L    
Sbjct: 70  PSVLKLFHFGRFDIAAMKAAFGVVTAP--VWCTKIAAKLVRTFTDRHGLKYLLQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIP 179
                              +D      T     +       +Y   DV     L   L  
Sbjct: 124 -----------------VGVDVSKQQQTSDWGSETLSDAQKDYAASDVLYLHRLMAELER 166

Query: 180 LSDGERDLWLLDQTINDRGYR 200
               E  L L  +  +    R
Sbjct: 167 CLIRENRLALAQRCFDFLPTR 187


>gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
 gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
          Length = 72

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
          + L+ D+ET    P+   G  AYAE   + L A+A +DEPV +WD T    +P  L + +
Sbjct: 4  NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 62

Query: 62 RDETVM 67
               +
Sbjct: 63 AAPETL 68


>gi|167516798|ref|XP_001742740.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779364|gb|EDQ92978.1| predicted protein [Monosiga brevicollis MX1]
          Length = 632

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 12/161 (7%)

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            + +   E  +     L      E  L  +   +   G  + L  ++  Q  +    + L
Sbjct: 266 LWRRLKAELEQRQQLTLFERL--EVPLTPVLVRMQVLGVGVALPQLVATQAALQHCLQSL 323

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLIT-------GIDLVDMSE-GTLKSILSHSNITQ 272
            ++   +  G   +      +   LF           + +    +  T +  L       
Sbjct: 324 TQEAA-ILAGQSFNLDSAQQVANILFTHLQLGRNVPMLPMTASGKPSTGEETLRKLQSKH 382

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313
               LIL            +  +   V   G +       G
Sbjct: 383 PLPGLILRYRQLKRCLSGYIEQVCPLVHE-GTVHPRWHQPG 422



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 39/164 (23%)

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
           +  ++ +         A + +L       +   +  +  GV QL   +            
Sbjct: 428 KRVTYAVVYGVGAERLAAQLQLSVPETGQLVAEFLDRFPGVAQLRDRVDAYLHQHGYVET 487

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
               R                        R L      G+ S   T  ++  R       
Sbjct: 488 LTMRR------------------------RYLSPPGTGGESS---TTQARDSRAA----- 515

Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVS 634
               ++Q  + DI    M          +    IVL +HD+IV 
Sbjct: 516 -FNFVMQGSAADICKAAMVTLQAHLDKHEVEGGIVLQLHDQIVI 558



 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 24/116 (20%), Gaps = 11/116 (9%)

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPID------KVSKEQRAIGKVMELALGYQGGAKVFK 449
              I  +   +        +      +            R  GK +  A+ Y  GA+   
Sbjct: 385 PGLILRYRQLKRCLSGYIEQVCPLVHEGTVHPRWHQPGLRERGKRVTYAVVYGVGAERLA 444

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                  L L             + +         +     +    + L      L
Sbjct: 445 A-----QLQLSVPETGQLVAEFLDRFPGVAQLRDRVDAYLHQHGYVETLTMRRRYL 495


>gi|148807579|gb|ABR13590.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +   ++I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+  R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLXLRMLAHYMRDER 186


>gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
 gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
          Length = 210

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 42/194 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-------WDDEPVKLWDRTEQSAMPSD 56
           L ID ET             +A    + L  +         DD+ V L    +Q     +
Sbjct: 20  LAIDTETMGLN---------FARD-RLCLLQFCQESKDDNIDDKEVFLVKFEDQQYNSHN 69

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113
           L + L D +   + H + F+    +  LG+ +      CT+V ++          LK+ C
Sbjct: 70  LKKLLMDCSRTKIFHFARFDLAAIQYYLGVTLN--NIFCTNVASKLVRTYTDSHGLKDLC 127

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L              L  +  K    S     +  +  +      EY  +DV     +
Sbjct: 128 REL--------------LGIQISKQCQSSDWGRQSLTSDQE------EYAAKDVVYLHRI 167

Query: 174 FKRLIPLSDGERDL 187
              L  +   E  L
Sbjct: 168 KNILEEMLIREHRL 181


>gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101]
          Length = 234

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 28/184 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L   + D + V         +    L Q +  
Sbjct: 50  LAVDTE--------AMGLVHGRD--RLCLVQISDDQDNVCCIRILRGQSEAPLLKQLMEH 99

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H + F+     + LGI +      CT V +R     ++               
Sbjct: 100 SGIVKVFHFARFDVAALGEGLGIAVNP--LFCTKVASRLARTYTNRHGL----------- 146

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                K L++  C   +D            +  +    Y   DV       +RL  + + 
Sbjct: 147 -----KELVSELCGVELDKGAQSSDWGRVEELSETQLAYAANDVRYLLPARERLTQMLER 201

Query: 184 ERDL 187
           E  L
Sbjct: 202 EERL 205


>gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
 gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
          Length = 225

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 58/211 (27%), Gaps = 36/211 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D E         +G+    +   + L   A  ++ V             +L + L 
Sbjct: 42  RLAVDTE--------AMGLIHGRD--RLCLVQIADAEDRVACVRIGLGQTEAPNLKRLLE 91

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFS 119
             TV  V H + F+       LGI++      CT V +R          LK+  + L   
Sbjct: 92  APTVEKVFHFARFDVAALAAGLGIEVNP--VFCTKVGSRLGRTYTPRHGLKDLVMEL--- 146

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                   G  L         D            +       Y   DV       +RL  
Sbjct: 147 -------VGVEL---------DKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEK 190

Query: 180 LSDGE--RDLWLLDQTINDRGYRIDLDLVLK 208
           +   E   DL             +D     +
Sbjct: 191 MLRREGRWDLAQRCFQCVPVVAELDRLRFHQ 221


>gi|76810908|ref|YP_333055.1| hypothetical protein BURPS1710b_1651 [Burkholderia pseudomallei
           1710b]
 gi|76580361|gb|ABA49836.1| 34L [Burkholderia pseudomallei 1710b]
          Length = 262

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 37/206 (17%)

Query: 1   MSK---LFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDR--- 47
           M K   L +DIET              V +     +  I      W DD  V   D    
Sbjct: 1   MKKPRILSLDIETSPILAYVWSLWKQNVSLGQIHSEWCILSFCAKWLDDPRVIYHDTSRQ 60

Query: 48  ---TEQSAMPSDLLQYLRDETVMCVAHN-SLFERI-LFKKTLGIDIPS---KRWICTSVL 99
               +   +   L + L    +  VA N   F+   +  + L + +P     + + T V 
Sbjct: 61  RNKEDDRRIVRKLWRLLDQADI-VVAQNGIKFDAKKIQARFLLLGMPPPSPFKVVDTLVE 119

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---HVQAW 156
           AR                F+ +  +    K       K     P ++  R     +++AW
Sbjct: 120 AR------------KHFGFTSNKLEWLTEKLCKKHKKKKHAKFPGFELWRECLKGNLEAW 167

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD 182
               EY   DV +  EL+  L P   
Sbjct: 168 AEMKEYNVEDVLSLEELYLVLRPWMQ 193


>gi|47934798|gb|AAT39837.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 27/166 (16%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-TQLAKDLILNRLASSGSAILK 291
            +      +   L  +         +G +                 I   L     A  +
Sbjct: 31  FNVGSRXQIAERLVGVGVKFKQKTEKGAVVVNXKVLEGIDIPEAKTIYEYLMLQKRA-AQ 89

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++       DGR+ G +   GA  TGR +        +P                    
Sbjct: 90  IDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP-------------------- 127

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                        RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 128 ---SVXAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 170


>gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506]
 gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506]
          Length = 210

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 31/200 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQSAMPSDLLQY 60
            + ID ET    P           +  + +   +  D    +             +L   
Sbjct: 23  FVAIDTETLGLNP----------HRDRLCVVQLSPGDGTADVVQIPAGAGPGSAPNLEAL 72

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D  +  + H + F+  +  KT G+ +      CT + +R                   
Sbjct: 73  LTDPRITKLFHFARFDVAVLGKTFGLTVAP--VWCTKIASRL-----------------T 113

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G   + R   G   S     +     +  +   +Y   DV     L ++L  +
Sbjct: 114 RTYTDRHGLKELVRELIGVDLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASM 173

Query: 181 SDGERDLWLLDQTINDRGYR 200
              +    L          R
Sbjct: 174 LARDGRTELAQSCFEFLPTR 193


>gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
 gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
          Length = 204

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 35/205 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E         +G+  + +Q  + +   +       +     ++    +L   + 
Sbjct: 19  ILAVDTE--------AMGLEFHRDQ--LCVVQLSDGTGDEHVVRLDRKTFDCPNLKALMS 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D  V+ + H + F+  + KK LGI+       CT + ++          LK+    L   
Sbjct: 69  DTKVLKIFHFARFDVAMMKKWLGIECAP--IFCTKIASKLARTYTDRHGLKDVSREL--- 123

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                             G+  S     +        +    Y   DV    E+ ++LI 
Sbjct: 124 -----------------VGADMSKAQQSSDWGADSLSEAQLAYAASDVLYLHEIREKLIL 166

Query: 180 LSDGERDLWLLDQTINDRGYRIDLD 204
           + + E  + L     +    R DLD
Sbjct: 167 MLEREGRMELAQACFDFLPKRADLD 191


>gi|148807500|gb|ABR13554.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807556|gb|ABR13580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   ++ +     I   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPE--AKTIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KLV  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGKECRSFWCVPEGHKLVGIDASGLELRMLAHYMRDER 186


>gi|307249710|ref|ZP_07531689.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858218|gb|EFM90295.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 68

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 614 MKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEG 667
           M    K         +++ VHDE+V E  +         + + M K       +PL AE 
Sbjct: 1   MIGIDKAIRGDDNIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAEV 58

Query: 668 YEAKRY 673
                +
Sbjct: 59  GVGDNW 64


>gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
 gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
          Length = 204

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L   L +
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKTLLGN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             +  + H + F+      T G  +  +   CT + +R          LK+    L  + 
Sbjct: 70  TAITKIFHFARFDVATLFHTFG--VMPQPVYCTKIASRLARTYTDRHGLKDLVREL-LNI 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            L+K         +      DS               L     K DV   RE
Sbjct: 127 DLSK-------QQQSSDWGADSLSEPQLAYAASDVLHLHALREKLDVMLARE 171


>gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse]
 gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse]
          Length = 206

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 29/203 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + +   +  D    +    +      +L++ L+D
Sbjct: 22  VAVDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQKSAPNLVKLLKD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + +  + H   F+  +   T G  +      CT + ++                      
Sbjct: 72  KAITKIFHFGRFDLAILAYTFG--VMPDVVFCTKIASKL-----------------TRTY 112

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   I         S     +        +   EY   DV     L          
Sbjct: 113 TDRHGLKEICCELLNVNISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIFEERLKR 172

Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206
           E    +          R  LDL+
Sbjct: 173 EERENVAKACFQFLPMRAKLDLL 195


>gi|148807564|gb|ABR13584.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       +GR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKEGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
 gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
          Length = 390

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 33/194 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + L  D+E  S        +  Y E   + L   +   +   +         P  L   L
Sbjct: 40  NILAFDLEADS--------LHHYTE--KVCLIQVSNLSQTALIDPLAPVDLSP--LAPVL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  +  V H + ++     +  G+++       T +  +  G          AL     
Sbjct: 88  ADRGIRKVFHGADYDMRSLYRDFGLEV--CNMFDTMIACQFLGEKE--VGLAAAL----- 138

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             K   G  L  ++ K      P+               EY K D      L+ +L    
Sbjct: 139 --KKRFGVELNKKYQKADWSKRPFSAE----------MIEYAKMDTALLIRLYLQLEEEL 186

Query: 182 DGERDLWLLDQTIN 195
             +  L  +++   
Sbjct: 187 RAKGRLEWVEEESE 200


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 60/218 (27%), Gaps = 37/218 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID ET        +G+    +   + +   +  D    L           +L + L
Sbjct: 18  RVVAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTRAPNLERLL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNF 118
            D  V+ + H   F+    ++  G  + ++   CT + +   RT      L      L  
Sbjct: 68  TDPQVLKLFHFGRFDIAALQRAFG--VRTEPVWCTKIASKMVRTFTDRHGL----KYLLL 121

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                              G   S     +     +      +Y   DV     L + L 
Sbjct: 122 E----------------LVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKEELE 165

Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                +G  +L             +DL    +  ++  
Sbjct: 166 ARLLREGRMELAQRCFDFLPTRAELDLMGWDEPNDIFH 203


>gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 204

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 53/208 (25%), Gaps = 37/208 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L   L +
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQIAKGQTEAPNLCALLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          L   C  L    
Sbjct: 70  PHVLKLFHYGRFDIAAMLNAFGATAAP--VYCTKIASRLIRTYTDRHGLAKLCQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                S     +     +  Q   +Y   DV     L   L   
Sbjct: 124 ----------------LSVDISKQQQSSDWGAKELTQAQIDYAASDVLYLHRLRDELNKR 167

Query: 181 SDGE--RDLWLLDQTINDRGYRIDLDLV 206
              E   D+            R+DL+  
Sbjct: 168 LIREGRMDMAQACFDFLPMRARLDLEGW 195


>gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
 gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
          Length = 204

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 36/208 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + + +D ET          +     +  + L   +  D    L   +   + P +L + +
Sbjct: 18  NVVAVDTET----------MGLVCRRDRVCLVQLSSGDGDAHLVKFSGDYSAP-NLRRIV 66

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            +  +M + H + F+    +   G  + +    CT + +R          LK+ C  L  
Sbjct: 67  SNPDIMKIFHFARFDVAAIRHCFG--MWATPCYCTKIASRLVRTYTNHHGLKDLCYEL-- 122

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                              G   +     +             Y   DV    ++ K+L 
Sbjct: 123 ------------------LGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLD 164

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLV 206
            + + E    L +        R +LDL+
Sbjct: 165 MMLEREDKQDLAESCFKFIPARAELDLL 192


>gi|291335381|gb|ADD94995.1| type I DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 176

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 20/183 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY---AWDDEPVKLWDRTEQSAMPSDLLQY 60
           L  DIET               + + I   A    + D + +   D      +   L + 
Sbjct: 7   LIFDIETNGLLH----------DVSTIHCLAIHDLSTD-QTIAYNDTGSSEPISRGLQR- 54

Query: 61  LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           L+D   + + HN   ++  + +K           + T +L+R       + N   +  + 
Sbjct: 55  LQDADRI-IGHNIIGYDIPVIRKLYPWFGKPAYMVDTLLLSRL--YHPDMINLDKSRTWD 111

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               K+    +L +   +       Y  T +N     Q   +YC +DV  T +L+K   P
Sbjct: 112 GMPLKLYGKHSLESYGYRLDERKGDYGST-SNWTDWSQEMEDYCIQDVHVTTKLWKHFQP 170

Query: 180 LSD 182
             +
Sbjct: 171 YLN 173


>gi|239918065|ref|YP_002957623.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|281415754|ref|ZP_06247496.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|239839272|gb|ACS31069.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
          Length = 578

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 84/358 (23%), Gaps = 67/358 (18%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224
            RL  L+  E    L+   I   G   D  +   L                  + L E I
Sbjct: 163 HRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQALAERI 222

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNITQLAKDLILN 280
             +      S     +L   L    G+ +    +  LK  +                +L 
Sbjct: 223 ADVLGSPGLSPDSQPSLLRAL-QTAGVAVESTRQWDLKHWIDAGGAEREARAALLAPLLE 281

Query: 281 RLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             A +           +  +  DGR        G   TGRW+        +P        
Sbjct: 282 YKALARLWTANGWHWLDQWIGDDGRFHAAY-LVGGVVTGRWAAHGGGAMQVPAG------ 334

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR  + A  G  L VAD + +E R+LA +A ++   
Sbjct: 335 ------------------------VRDAVRADPGWTLTVADASQVEPRILAAMAADEVLA 370

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +A    +                  +   R   K+  L   Y         +        
Sbjct: 371 RAGTTPDLYREVAEQG----RAAGTALADRGRAKIALLGAMYGSTTGDSAAL-------- 418

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                          + +A                    +G       + W+     V
Sbjct: 419 --------MPHLRRLYPRAIGLLERAATVGEGGGQVSTWLGRWSPAPGRKWQESVSDV 468



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 57/207 (27%), Gaps = 27/207 (13%)

Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
              MA+   L     + ++      +      +     + +                 + 
Sbjct: 360 LAAMAADEVLARAGTTPDLYREVAEQGRAAGTALADRGRAKIALLGAMYGSTTGDSAALM 419

Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
              R  +   + L   L      V + GG +S       P                  R+
Sbjct: 420 PHLRRLYPRAIGL---LERAA-TVGEGGGQVSTWLGRWSPAP---------------GRK 460

Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYD 623
             + +   D       ++   R R+ G      +VQ  + +     M    +     G  
Sbjct: 461 --WQESVSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMR 518

Query: 624 --IVLTVHDEIVSETPDTPYFSVGTLC 648
             +V  VHDE+V   P T   +V T+ 
Sbjct: 519 TELVFFVHDEVVLHGPTTEAEAVRTVV 545


>gi|254386231|ref|ZP_05001542.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194345087|gb|EDX26053.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 413

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 66/482 (13%), Positives = 111/482 (23%), Gaps = 148/482 (30%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233
           E   +L+   ++  G     D    L   +           +   +L + I       +R
Sbjct: 8   ESAAFLVAAEMHRAGLPWRADTHRALLTELLGERYAGGGQPRRLAELADRISDAFGRRVR 67

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                  ++   F   GI L       ++ I         A + ++              
Sbjct: 68  PDLPADVIKA--FAEAGIKLKSTRRWEIQEI------DHPAVEPLVEFKKLYRIYTAHGW 119

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +       DGR R      G + TGRW         +P+                     
Sbjct: 120 SWLADWVHDGRFRPEFIP-GGTFTGRWVTNGGGALQIPK--------------------- 157

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +R  ++A  G +LVVAD   +E RVLA I+ +   ++     ED+Y    
Sbjct: 158 ---------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPAFMEVAGRPEDLYTAIS 208

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            + F    D          K+  L   Y              G  L+  +          
Sbjct: 209 RQGFAGDRDM--------AKLAVLGAVY----------GQTSGDGLKNLAAL-------- 242

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
                                                R +    +     + E      +
Sbjct: 243 -------------------------------------RRRFPRAVAY---VDEAAK-AGE 261

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
           EG  +        P      H                S    +        S   R R  
Sbjct: 262 EGRLVRTWLGRTCPPPAASEHGDTDGEAGIPQAAPQSSAPDREDGRTPAYASSHSRAR-- 319

Query: 594 GGKLTENIVQAISRDILCEGMKNATK------------------NGYDIVLTVHDEIVSE 635
           G      +VQ                                     ++V   HDE++  
Sbjct: 320 GRFTRNFVVQGS------------AADWALLLLAALRQAIAAAGMRAELVFFQHDEVIVH 367

Query: 636 TP 637
            P
Sbjct: 368 CP 369


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 35/187 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + L   +  D    L    +      +L + L D
Sbjct: 20  VAIDTET--------MGLDPRRD--RLCLVQLSSGDGNAHLVQIAKGQREAPNLARMLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+    +   G+        CT + ++          LK     L    
Sbjct: 70  PKVLKLFHFGRFDIAALEAAFGVVTKP--VWCTKIASKMVRTYTDRHGLKYLLSEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +     +  +   EY   DV     L   L   
Sbjct: 124 ----------------VGVDISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAELEKR 167

Query: 181 SDGERDL 187
              E  L
Sbjct: 168 LAREGRL 174


>gi|148807504|gb|ABR13556.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLARYMRDER 186


>gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 80

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292
                L + LF   G+ ++  ++    T   +L+           IL     S      +
Sbjct: 1   NSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPXVSDILEYRQISKIQSTYV 60

Query: 293 NTLSEAVSS-DGRLRGTLQF 311
             L + +   DGR+      
Sbjct: 61  KGLLDVIDERDGRIHTRYLQ 80


>gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43]
          Length = 787

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/387 (11%), Positives = 97/387 (25%), Gaps = 85/387 (21%)

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
                  + +     +   V  D  +   L  +  + TGR S      QNL + ++S   
Sbjct: 412 RYDEKKKAHV----GMLTLVQLDSIVHHMLN-HTNTVTGRLSSSNPNLQNLSKGQKS--- 463

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDW 397
                                   V+    +       ++ +D + +E  V A +   + 
Sbjct: 464 -----------------------RVKEVFESRWGEDGVIIQSDFSSLEVYVQAILTKAEK 500

Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457
            I+   +G+D++    A       ++V +  + I                          
Sbjct: 501 LIEDLKSGKDMHCVRLAAKEGKTYEEVFELCKIIADPE---------------------- 538

Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                              +  S            A    +     E + +A   ++  V
Sbjct: 539 -----------WDYKRTGAKVFSFQRAYGAGNKTIAESTGMPLEEVEALAQAEDERYHEV 587

Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577
              ++  TE      +  G          P           H   P  +   Y     + 
Sbjct: 588 PAYFEKKTEEIKASREPAGIWLIH-----PANGADVQLGVGHSRTPGGKLYTYK----ET 638

Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNAT--------KNGYDIVLTV 628
              +    + +       ++    VQ    +I   GM             K    +V  V
Sbjct: 639 LAPDFLVKRGILRNFMPTEIKNYEVQGEGGEIAKAGMWLTVRAFYTYENFKMLALLVNQV 698

Query: 629 HDEIVSETPDTPY-FSVGTLCSLMTKN 654
           HD   ++        +   L + M++ 
Sbjct: 699 HDAEYADAHKKVATKAAALLHACMSEA 725


>gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
 gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico]
 gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia]
 gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 204

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 36/208 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           + + +D ET          +     +  + L   +  D    L   +   + P +L + +
Sbjct: 18  NVVAVDTET----------MGLVCRRDRVCLVQLSSGDGDAHLVKFSGDYSAP-NLRRIV 66

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            +  +M + H + F+    +   G  + +    CT + +R          LK+ C  L  
Sbjct: 67  SNPEIMKIFHFARFDVAAIRHCFG--MWAVPCYCTKIASRLVRTYTNHHGLKDLCYEL-- 122

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                              G   +     +             Y   DV    ++ K+L 
Sbjct: 123 ------------------LGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLD 164

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLV 206
            + + E    L +        R +LDL+
Sbjct: 165 MMLEREDKQDLAESCFKFIPARAELDLL 192


>gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 211

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 28/206 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L ID E         +G+    +   + L     +            ++  + L   L
Sbjct: 27  SFLAIDTE--------AMGLIHGRD--RLCLVQICNEFGRTSCIKIELNTSSSTHLKALL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+ +  + H + F+    K    ++I +K   CT + +                     
Sbjct: 77  EDDKITKIFHYARFDVAALK--CNLEINTKNIFCTKIAS----------KLARTYTNKH- 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         ++    +   +Y   DV    E   +L  + 
Sbjct: 124 -----GLKDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVIL 178

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
             E    L  +         DLD++ 
Sbjct: 179 KRENRYELAQKCFETVPVHADLDILK 204


>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
 gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
          Length = 203

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 56/204 (27%), Gaps = 35/204 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L + L D
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVIQMSGGDGNAHLVQVAKGQTEAPNLCKMLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+    +   G         CT + ++          LKN    L    
Sbjct: 70  PNVLKLFHFGRFDIAAMQNAFGAVTAP--VYCTKIASKLIRTYTDRHGLKNLLQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S        N         EY   DV     L   L   
Sbjct: 124 ----------LNIDISKQQQSSDWGSAKLTNAQL------EYAASDVLYLHRLRTELNKR 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204
              E  + +     +    R +LD
Sbjct: 168 LIREDRMVIAQACFDFLPMRANLD 191


>gi|148807599|gb|ABR13599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L S   A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMSQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  +GR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VSGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10]
 gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10]
          Length = 204

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 45/181 (24%), Gaps = 25/181 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D ET        +          + +   +  D    +           +L + L 
Sbjct: 19  IVAVDTETLGLSLTRDM----------LCVVQLSAGDGDAHVVQMNRADYDCPNLKRVLA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL-NF 118
           D  V  + H + F+  +  K LG+ +      CT + ++          LK+    L   
Sbjct: 69  DPAVEKILHFARFDVAMVDKYLGVTMAP--VFCTKIASKLVRTYTDRHGLKDVTRELVGA 126

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                          +      D                L     K  +   RE    L 
Sbjct: 127 EM---------NKQQQSSDWGADELSPAQLDYAASDVLHLHKLREKLGMMLEREGRTDLA 177

Query: 179 P 179
            
Sbjct: 178 K 178


>gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701]
 gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701]
          Length = 228

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L   A   + V              L + +  
Sbjct: 41  LAVDTE--------AMGLVHGRD--RLCLVQIADHLDNVCCIRIARGQQEAPRLRELMES 90

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
             +  V H + F+        G+ I      CT V +R          LK     L
Sbjct: 91  PAIEKVFHFARFDLAALG--EGLGIAVAPLFCTKVASRLARTYSSRHGLKEVVQEL 144


>gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
          Length = 207

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+    +   + +   +  D  V +           +L+  L D
Sbjct: 23  IAVDTET--------LGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKNA 112
           E    + H   F+  +   T G+ +      CT + +R        +GL  +LK  
Sbjct: 73  EKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKEL 126


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 41/149 (27%), Gaps = 32/149 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET    P          E   I    +      +       Q  +P D    
Sbjct: 1   MREIVLDTETTGLDPAEG---HRIIEIGCIE-ILHTIPTGQIFHVYIDPQRDIPEDAVRV 56

Query: 58  ----------LQYLRD---------ETVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
                          D              VAHN+ F+       LG+     I S+R +
Sbjct: 57  HGITAEFLAGKPVFADIASEFLAFIGDAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVV 116

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFSEH 121
            T  LA  R  G  +SL   C        
Sbjct: 117 DTLALARRRHPGASNSLDALCNRYGIDNT 145


>gi|148807511|gb|ABR13559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 31/166 (18%)

Query: 235 SRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 +   L    +   +     +    + +L   +I +    +I   L     A  +
Sbjct: 49  VGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA-AQ 105

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +++       DGR+ G +   GA  TGR +        +P                    
Sbjct: 106 IDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP-------------------- 143

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                        RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ---SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
 gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
          Length = 382

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 41/198 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
            ++ +D+E  S        +  Y E   + L   +   E   +           DL    
Sbjct: 31  REVAVDLEMDS--------LHHYRE--KVCLIQISTRTESWLIDPLA-----LKDLSPLA 75

Query: 61  --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALN 117
             L +  ++ V H + ++     +  GI++       T + +R  G+    L        
Sbjct: 76  APLGNRDILIVMHGADYDIRSLHRDHGIEV--TNLFDTMIASRLLGITEFGLAAL----- 128

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 K   G  L  ++ K      P                 Y   D      L+  L
Sbjct: 129 -----LKARFGIELNKKYQKADWSKRPLSPE----------MRAYAVADTADLLRLYDML 173

Query: 178 IPLSDGERDLWLLDQTIN 195
                 +  L  L++   
Sbjct: 174 RDELLEKGRLAWLEEECR 191


>gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
 gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
          Length = 382

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 50/204 (24%), Gaps = 31/204 (15%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E      L    +  Y E   + L  +        +         P  L     + ++  
Sbjct: 27  EPYVACDLEADSMHHYQE--KVCLIQFTVPGLAAIVDPLAVADLAP--LAPVFANPSIRK 82

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE 127
           V H + ++     +  GI++       T +  +  G     L                  
Sbjct: 83  VFHGADYDIRSLHRDFGIEVN--NLFDTMIACQFLGEREFGLAAV--------------- 125

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
              L  RF         Y     +         EY  +D     EL  RL    + E   
Sbjct: 126 ---LRKRFGVELDKQ--YQRADWSRRPLTAGMIEYAAKDTTLLIELCGRL----EAELRE 176

Query: 188 WLLDQTINDRGYRIDLDLVLKLQE 211
                 + +    +    V +  +
Sbjct: 177 KGRIGWVEEECALLARVRVAQRSD 200


>gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205]
          Length = 225

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 52/187 (27%), Gaps = 34/187 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L   + D + V              L + +  
Sbjct: 41  LAVDTE--------AMGLIHGRD--RLCLVQISDDHDNVCCIRIHRGQTEAPLLKELMEA 90

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSE 120
             +  V H + F+        G+DI      CT +   LART      L           
Sbjct: 91  AGIEKVFHFARFDVAALA--EGLDIHVSPIFCTKIGSRLARTYTNRHGL----------- 137

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                   K L+   C   +D            +  +    Y   DV        RLI +
Sbjct: 138 --------KDLVNELCHVELDKGAQSSDWGRVEELSESQLAYAANDVRYLLAARTRLIEM 189

Query: 181 SDGERDL 187
              E  L
Sbjct: 190 LVREERL 196


>gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 203

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 48/183 (26%), Gaps = 29/183 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D    L   T       +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCLIQMSGGDGDCHLVQVTPGQTAAPNLCAMLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+ + H   F+        G         CT + ++                      
Sbjct: 70  PDVLKLFHFGRFDIAALLNAFGALTAP--VYCTKIASKLV-----------------RTY 110

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   + +   G   S     +            +Y   DV    +L ++   L   
Sbjct: 111 TDRHGLKTLLQDMVGIDISKHQQQSDWGAPNLTDAQLDYAASDVLYLHQLKEKFDVLLAR 170

Query: 184 ERD 186
           E  
Sbjct: 171 EHR 173


>gi|227545493|ref|ZP_03975542.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227184527|gb|EEI64598.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 101

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
           A K  L       + + WR     ++Q W D+ +     ++     +         +   
Sbjct: 11  ATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTT------HGMKFI 64

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584
                + + L S R L Y   K   +   + +
Sbjct: 65  YRSGCMFLRLRSGRYLCYPQPKIGINRFGSES 96


>gi|148807541|gb|ABR13573.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807546|gb|ABR13575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 31/167 (18%)

Query: 234 SSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290
           +      +   L    +   +     +    + +L   +I +    +I   L     A  
Sbjct: 47  NVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA-A 103

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
           ++++       DGR+ G +   GA  TGR +        +                    
Sbjct: 104 QIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQV-------------------- 141

Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
              A          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 142 ---ASVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 185


>gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
 gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
          Length = 211

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 28/206 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L ID E         +G+    +   + L     +            ++  + L   L
Sbjct: 27  SFLAIDTE--------AMGLIHGRD--RLCLVQICNEFGRTSCIKIELNTSSSTHLKALL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE +  + H + F+    K    ++I +K   CT + +                     
Sbjct: 77  EDEKITKIFHYARFDVAALK--CNLEINTKNIFCTKIAS----------KLARTYTNKH- 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         ++    +   +Y   DV    E   +L  + 
Sbjct: 124 -----GLKDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVIL 178

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
             E    L  +         DLD++ 
Sbjct: 179 KRENRYELAQKCFETVSVHADLDILK 204


>gi|148807534|gb|ABR13570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTY-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                          RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 -----SVSAPFGRECRSFWWVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|295426488|ref|ZP_06819138.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295063856|gb|EFG54814.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 122

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ ++L   P+   E   + +DQ INDRG RID  LV            +  +   KLT
Sbjct: 1   MEITQKLERFPVPKNEWGNYWMDQDINDRGIRIDQQLVNNAIRCQKNFHDQYLQVSQKLT 60

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +      L+ +L    G+    +S+  +  +L  +  T     ++  R   S S+
Sbjct: 61  G--LANPNPPLQLKDWLHQ-QGVKTNSLSKAAVTQLLHTTTGT--VHQVLSLRQLLSKSS 115

Query: 289 ILKLNTL 295
           + K   +
Sbjct: 116 VKKYQAM 122


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVI---------------TLCAYAWDD-EPVK 43
           M  + ID ET S Q      +  A+ E   +                    A+    P  
Sbjct: 8   MKVIAIDFETASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPEH 67

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           + D  E   +   +   L     + +AHN+ F+  + ++      +  P   ++CT  +A
Sbjct: 68  VADADEWPDVLERIRPELE--GALVLAHNASFDISVIRRTCEHYDVPAPGFDYLCTVQVA 125

Query: 101 RTN---GLPSSLKNACLALNFS 119
           R+         L   C  L   
Sbjct: 126 RSVWPELPSHKLNVVCGHLGVD 147


>gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15]
 gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15]
          Length = 202

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVI---------------TLCAYAWDD-EPVK 43
           M  + ID ET S Q      +  A+ E   +                    A+    P  
Sbjct: 1   MKVIAIDFETASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPEH 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           + D  E   +   +   L     + +AHN+ F+  + ++      +  P   ++CT  +A
Sbjct: 61  VADADEWPDVLERIRPELE--GALVLAHNASFDISVIRRTCEHYDVPAPGFDYLCTVQVA 118

Query: 101 RTN---GLPSSLKNACLALNFS 119
           R+         L   C  L   
Sbjct: 119 RSVWPELPSHKLNVVCGHLGVD 140


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 29/189 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET    PL             + +   +  D    L      +     L   L D
Sbjct: 20  VAVDSETLGLNPLRD----------RLCVVQLSAGDGDAHLVTFDAGAYDAPHLKAVLSD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ + H + F+  +FK  LG+D  +    CT + +                       
Sbjct: 70  PQLLKIFHFARFDVAVFKHWLGVD--TTPIYCTKIAS----------KLAR-------TY 110

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   + R   G   S     +     +  +    Y   DV     + + L  + D 
Sbjct: 111 TDRHGLKDVVREMTGVELSKQQQSSDWAAAELTEAQRAYAASDVLHLHAVREGLDRMIDR 170

Query: 184 ERDLWLLDQ 192
           E    LL  
Sbjct: 171 EGRRALLTA 179


>gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLR 62
           + ID ET    P              + L   +  D    L    +       +L + L 
Sbjct: 20  VAIDTETMGLNPARD----------RLCLVQLSAGDGRCHLVQFRQGAGYDAPNLKRMLT 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
           D   + + H + F+  + +  LG  + +    CT V +   RT      LK+ C      
Sbjct: 70  DPGTLKLFHFARFDIAVMQAYLG--VLTGPVYCTKVASKLTRTFTDRHGLKDLCR----- 122

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                   G  L  +                      +    Y   DV    E+  RL  
Sbjct: 123 -----DLLGVELSKQQQSS---------DWGADELTAEQLK-YAASDVLHLHEIKARLDG 167

Query: 180 LSDGERDLWLLDQTINDRGYR 200
           +   E    L +        R
Sbjct: 168 MLAREGRTALAEDCFRFLPTR 188


>gi|225022624|ref|ZP_03711816.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944532|gb|EEG25741.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 893

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 47/206 (22%), Gaps = 19/206 (9%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111
             L  YL+        H++     +     GI +       T++ A           LK 
Sbjct: 354 KALADYLQSTQ-PKFLHDAKTTYHMLAG-RGITLGGIA-HDTALAAYLLNPGQRTYDLKT 410

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                                      +      D T  N +             +    
Sbjct: 411 TYQRHLHRTLEI-------------TETGQLSLLDITNTNTLITAAAAILELAATLPTKL 457

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
                L    D E  L  +   +   G  +D+  + +  +       + +     +    
Sbjct: 458 ATINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDP 517

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS 257
                    L++ LF   G+     +
Sbjct: 518 NLLLTSPKQLQVVLFETLGLPKTKKN 543


>gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11]
 gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 43/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L + L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQMSGGDGNAHIVQVAKGQTEAPNLCRMLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN    L   +
Sbjct: 70  PNVLKLFHFGRFDIAAMYHAFGALAAP--VYCTKIASRLVRTYTDRHGLKNLTQELIGVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +                       L       D    RE
Sbjct: 128 IS--------KQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDRE 171


>gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114]
 gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 28/194 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E     PL             + L         V       +   P  L + L +
Sbjct: 24  IAIDGEFSGLNPLTD----------KLHLLQICDGSNFVHFVKFDGEYDAPK-LKKVLEN 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL---N 117
            ++  + H    +    KK L I++       T + ++          LK+    L   N
Sbjct: 73  NSIKKIFHFGRADLGFIKKHLNINVK--NIYDTKIASKICRKFTSSHGLKDLSRDLININ 130

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKR 176
            S+     + GK       + S D   Y      H+    +   +   R+ +      ++
Sbjct: 131 LSKEHQTSDWGKK------EYSDDQIKYAANDVLHLHKIKEELDKILIRENKVELA--EK 182

Query: 177 LIPLSDGERDLWLL 190
                +   DL L 
Sbjct: 183 CFQFLETRTDLDLC 196


>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 945

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 34/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S+  ID+E  S + L          Q  + L   +   E V + D     +    L +  
Sbjct: 313 SEFAIDLEHHSYRSL----------QGFVCLMQVSTRTEDV-VIDTLAVRSSMHHLREVF 361

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSE 120
            +  ++ V H +  + +  +   GI   +     T   AR   L   SL +         
Sbjct: 362 ANPNILKVFHGADMDVVWLQHDFGIY--TINMFDTGQAARVLELGSYSLAHL-------- 411

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                      +  FC  + D               ++   Y + D      ++ RL   
Sbjct: 412 -----------LRYFCNVTADKKYQLADWRIRPIPAEMLQ-YAREDTHYLLYIYDRLRNE 459

Query: 181 S 181
            
Sbjct: 460 L 460


>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
 gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans]
          Length = 735

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 44/201 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           +++ ID+E     T                     L   +  ++   L D          
Sbjct: 235 NEIAIDLEHHDYRTYYGI---------------TCLMQISTREKDW-LIDTIALRDDLWI 278

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L +   D  +  V H +  + I  ++ LG+ I       T   +R  G P  SL      
Sbjct: 279 LNEVFTDPKITKVLHGAFMDIIWLQRDLGLYI--VSLFDTYHASRLLGSPKHSLAYLLER 336

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
               +   K                    Y  +        +    Y + D      ++ 
Sbjct: 337 YAHFKTSKK--------------------YQLSDWRVRPLPKALKAYARADTHFLLNIYD 376

Query: 176 RLIPLSDGERDLWLLDQTIND 196
            +      +  L  +     +
Sbjct: 377 NMRNSLIEQNKLSQVLHDSRN 397


>gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15]
 gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 205

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 23/188 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET        +G+       +      +  D    +   +       +L   L 
Sbjct: 20  IIAIDSET--------MGL-RLRRDPLCV-VQLSAGDGDAHVVRLSRPDYDCPNLKALLT 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           +  V+ + H   F+  +F+  LG+        CT + ++          LK+    L   
Sbjct: 70  NPKVLKLFHFGRFDIAMFELHLGVVTAP--VYCTKIASKLARTYTDRHGLKDVTRELLGV 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E           + +       S   D           L G   K +    RE    L  
Sbjct: 128 ELS--------KVQQSSDWGAPSLSVDQVAYAASDVLHLHGLRLKLNAMLEREGRMALAQ 179

Query: 180 LSDGERDL 187
            +      
Sbjct: 180 HAFDYLPH 187


>gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 60

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631
           R  TYGGKL ENIVQA++RD+L   M    + G+ IV+ V DE
Sbjct: 4   RLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDE 46


>gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine
           proteobacterium]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 52/201 (25%), Gaps = 35/201 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET    P              + +   +  D    L    +      +L + L 
Sbjct: 19  IVAIDCETMGLNPKRD----------RLCVVQLSSGDGHAHLVQVAKGQTAAPNLCRMLE 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFS 119
           D  V+ + H   F+    K+  G         CT + +R          LKN        
Sbjct: 69  DPNVLKLFHFGRFDIAAMKEAFGALTAP--VYCTKIASRMTRTYTDRHGLKNL------- 119

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L    C           +        +   EY   DV     L +RL  
Sbjct: 120 -----------LQELLCVDISKQ--QQSSDWGAADLTKAQVEYAASDVLYLHALRERLNE 166

Query: 180 LSDGERDLWLLDQTINDRGYR 200
           +   E  + L     +    R
Sbjct: 167 MLIREGRMELAQSCFDFLPTR 187


>gi|308178280|ref|YP_003917686.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745743|emb|CBT76715.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 549

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 94/410 (22%), Gaps = 76/410 (18%)

Query: 114 LALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             L+ S   +K  E   L   +  F   + D+     +    +          +  +   
Sbjct: 84  RILHRSPLASKELEDFDLERPVQSFEPANQDALFAAPSSGESLSEIIAMYLSQREALPQD 143

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ----------ERKKL 220
               +RL  L   E    L+   +   G   D      L                +    
Sbjct: 144 PGPGQRLELLIHAESVGALIACEMEAAGLSWDEAGHRALLREQLGPRVSDYGRPPKLAAK 203

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            + +         +      L   L    G  +  +    L+ +             +L 
Sbjct: 204 AQQLATALGTPGLNPDSPQELLRALH-KAGFAVSSVRAWELEQL------NHPLIAEVLE 256

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
               S  A    +   +    +GR          +  GRW+        LP         
Sbjct: 257 YKKLSRLASTHGDAWLDQWVKNGRFHPHYVLGTVTS-GRWAASGGGALQLP--------- 306

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
                                  +R  +    G   VVAD   +E R+LA I+ +    K
Sbjct: 307 ---------------------HSIRQVVRTREGSTFVVADGRQLEPRILAAISNDQQLQK 345

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
           A               +   +D      R   K+  L++ Y                   
Sbjct: 346 AGQQ---------DDLYQWLLDAKLVASRNDAKLGMLSVIY----------------GGG 380

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510
             +      +    +  A            +       +G  C    + W
Sbjct: 381 GGASGAVGAALTRSFPTAMRFVEQAAATGQQGGGVRSFLGRGCPPADEQW 430



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 599 ENIVQAISRDILCEGM----KNATKNGY-DI---VLTVHDEIVSETPDTPYFSVGTLCS 649
             +VQA + +     M        + G+  I   V  VHDEIV E P      +  +  
Sbjct: 459 NFVVQATAAEWALVWMGHARHLIHQAGWSRICKQVFFVHDEIVFECPTGLAPQLQEVIR 517


>gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
 gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 206

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 16/116 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D ET        +G+  + +   + +   +  D    +         P  L   L D
Sbjct: 24  IAVDTET--------MGLNPHRD--RLCVVQLSGGDNIAHVVHLNRDLQAP-VLASLLGD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
            +V+ + H   F+        G+ +  +   CT + ++          LK  C  L
Sbjct: 73  PSVLKIMHFGRFDIASI--HHGLGVLCEPVYCTKIASKLCRTNTDSHGLKALCKDL 126


>gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
 gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
          Length = 214

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 54/207 (26%), Gaps = 34/207 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L      ++ V              L + +  
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQICDAEDQVSCVRIALGQTEAPRLKELMER 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSE 120
            ++  V H + F+        G+ I      CT V   LART      LK   + L    
Sbjct: 82  ASIEKVFHFARFDVAALA--TGLGIRVNPIFCTKVGSRLARTYSPRHGLKEVVMEL---- 135

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G  L  +                   +  +    Y   D         RL  +
Sbjct: 136 ------VGVELDKQAQSS---------DWGRVDELSETQLAYAANDARYLLPARDRLKEM 180

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207
              E    L ++         DLD   
Sbjct: 181 LQREGRWELAERCFECIPVMSDLDRFR 207


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLLQY 60
           + ID ET        +G+  + +   + +   +  D    +          + P +L++ 
Sbjct: 20  VAIDTET--------LGLKPHRD--RLCVVQLSNGDGTADVVQIPAGATAESAP-NLVRM 68

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLAL 116
           L D  V+ + H   F+  +   T G+        CT + +R          LK+    L
Sbjct: 69  LADPNVVKLFHFGRFDIAVLLHTFGVTTAP--VFCTKIASRLTRTYTDRHGLKDLVREL 125


>gi|91084227|ref|XP_969046.1| PREDICTED: similar to egalitarian CG4051-PA [Tribolium castaneum]
 gi|270009271|gb|EFA05719.1| egalitarian [Tribolium castaneum]
          Length = 812

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 54/214 (25%), Gaps = 32/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             +TL   A       ++D  T    + S L + L    ++ + H+   + +       I
Sbjct: 430 GQLTLLQIATMSGFSYVFDLITCPGMIDSGLKKLLESSQIVKIVHDCRNDSVNLFNQFNI 489

Query: 87  DIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIARF 135
            +       T                      +L   C       +  K           
Sbjct: 490 TLN--TIFDTQAAHAVLTFQETGRPVYKAKSVALNALCEHYGAPINPMKD---------- 537

Query: 136 CKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDV--EATRELFKRLIPLSDGERDLWLLDQ 192
               + +      +    +   +    Y   DV      +++  +      E     L+ 
Sbjct: 538 ---QLKNIYRRDQKYWSRRPLTREMILYASADVLSLVNEKIYYPMSKAIKMENRQLFLEL 594

Query: 193 TINDRGYRIDLDLVL--KLQELIAQERKKLDEDI 224
                   ID + V   K Q     E  +L + +
Sbjct: 595 CHEQIFMHIDPESVKGRKRQRKTETEVSELRQKL 628


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 30/158 (18%)

Query: 3   KLFIDIETR----SPQPLPKVGVWAYAEQAVIT-LCAY--------AWDDEPVKL----- 44
            +  D ET     S                 I    ++        +   E ++      
Sbjct: 518 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRSIPAESIRYHGITD 577

Query: 45  ---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
               D+     +      Y+ D   + VAHN+ F+    +   K +G+       + T +
Sbjct: 578 EMVIDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKEMGVRFD-SPVLDTMI 634

Query: 99  LARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIA 133
           L+          SL + C              G +++ 
Sbjct: 635 LSNFLDGPEAGHSLDDICERYGIEITDRHTALGDSMVT 672


>gi|223986450|ref|ZP_03636454.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
 gi|223961602|gb|EEF66110.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
          Length = 171

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTE--QS--AMPSDLL 58
           +  D ET S          A  A +  I   +++  +                    +L 
Sbjct: 23  VAFDFETTSDAAYRTEPKAALDAHKLHIVSVSFSTTEGDASNVPLLHRIGENCEKQDELW 82

Query: 59  QYL-----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            +L      +  ++ +AHN  FE +       I +       T   ++ 
Sbjct: 83  TFLKTEVFENPNIVKIAHNLSFEAMFL-YAKNIIVQ-MPCYDTIAASQL 129


>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 756

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 82/272 (30%), Gaps = 57/272 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y    +++L   +  D+   +            L +  
Sbjct: 242 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVF 291

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H S  + I  ++ LG+ +       T   A   G P  SL           
Sbjct: 292 ADPKILKVLHGSTMDIIWLQRDLGLYV--VGMFDTFHAASALGFPKRSL----------- 338

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                   K L+++F     D                +F +Y + D      ++ RL   
Sbjct: 339 --------KFLLSKFVNFEADKRYQTADWRARPLPPAMF-DYARSDTHYLLYIYDRLRND 389

Query: 181 S-------------DGERDLWLLDQTINDRGY-RIDL-------DLVLKLQELIAQERKK 219
                           ER      Q      Y  ++        DL+ +    +++E+  
Sbjct: 390 LIDNSTEDASHIDYVNERSKHEALQRYERPVYDAVNGYGPGGWYDLLWRHSANLSKEQFA 449

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           + + + +  D +   +R        +F    +
Sbjct: 450 VFKAVHQWRDEV---ARAEDEGWQCVFPKHML 478


>gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
 gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
          Length = 205

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 35/189 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + ID ET        +G+       +      +  D    +   +       +L   L
Sbjct: 19  SIIAIDSET--------MGL-RLGRDPLCV-VQLSSGDGDAHVVRLSRPDYDCPNLKALL 68

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D  ++ + H   F+  +F+  LG+        CT + ++          LK+    L  
Sbjct: 69  TDPAILKLFHFGRFDIAMFQLHLGVVTAP--VYCTKIASKLARTYTDRHGLKDVTREL-- 124

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       L     K    S     + +    A      Y   DV     L ++L 
Sbjct: 125 ------------LGVELSKAQQSSDWGSASLSADQVA------YAASDVLHLHGLRQKLN 166

Query: 179 PLSDGERDL 187
            + + E  +
Sbjct: 167 AMLEREGRM 175


>gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
 gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
          Length = 206

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 58/203 (28%), Gaps = 40/203 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E     PL             + L       + V L     +   P +L + L +
Sbjct: 23  IAIDGEFSGLNPLTD----------KLHLLQLCDGSDFVHLVKFEGKYNAP-NLKEILEN 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLAL---N 117
             +  + H    +    K+ L  DI       T +   ++R       LK+ C  L   N
Sbjct: 72  NKIKKIFHFGRADLAFLKQHL--DIHVTNIFDTKIGSKISRKFSPHHGLKDLCRDLININ 129

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            S+     + GK +                              Y  +DV    ++   L
Sbjct: 130 LSKEYQTSDWGKKIEEYSEDQI---------------------LYACKDVLYLHKIKNEL 168

Query: 178 IPLSDGERDLWLLDQTINDRGYR 200
             +   E  L L +Q       R
Sbjct: 169 EKILKRENKLELAEQCFKFLETR 191


>gi|47934836|gb|AAT39856.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 219

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 60/229 (26%), Gaps = 61/229 (26%)

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG------------------------ 230
              G+  D +   KL+  +  E + + + +                              
Sbjct: 1   ERNGWYFDEEAARKLESSLRIEHETITKVLQDRYPYVAGKEFTLKRNNKTQGYIEGCTFT 60

Query: 231 --IIRSSRQTYALRMYLFLITGIDL---VDMSEGT-LKSILSHSNITQLAKDLILNRLAS 284
                +      +   L    G          +    +++L         K L L  L  
Sbjct: 61  RLKEFNPSSRDHIAWILKTHCGWTPSSLTSTGKAVIDETVLKEIGTDTALKFLTLLDLTK 120

Query: 285 SG-SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                   +N   + V++  R+        A+   R +        +P  E         
Sbjct: 121 QLGMISEGVNAWQKLVTTSSRIHHYCSTNTATF--RCAHRTPNLGQVPSDE--------- 169

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392
                                R    A+ G+++V ADL+GIE R+LA  
Sbjct: 170 -------------------RFRRLFTATPGQRMVAADLSGIELRMLAHY 199


>gi|148807562|gb|ABR13583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   ++ +     I   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPE--AKTIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +    A  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNSA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KLV  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGKECRSFWCVPEGHKLVGIDASGLELRMLAHYMRDER 186


>gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM]
 gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM]
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 55/221 (24%), Gaps = 42/221 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET        +G+  + +   + +   +  D    L    +      +L++ L 
Sbjct: 19  IVAIDCET--------MGLLPHRD--RLCVVQLSGGDGHAHLVQVAKGQRTAPNLVRLLE 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           +  V+ + H   F+        G         CT + ++          L+N    L   
Sbjct: 69  NPDVLKLFHFGRFDIAAMLNAFGAVAAP--VYCTKIASKLVRTYTDRHGLRNLLQDLLGV 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +                K    S       +           Y   DV     L + L  
Sbjct: 127 DIS--------------KHQQSSDWGRAELSTAQID------YAASDVLYLHRLREALNV 166

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
               E         +       D   +    +L       L
Sbjct: 167 RLLREER-------MEMAQACFDFLPMRAQLDLAGWPDDDL 200


>gi|242767043|ref|XP_002341292.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 771

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 28/235 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E           V  Y     ++L   +  D+   +            L +  
Sbjct: 248 KEIAVDLE--------HHDVHTYYGL--VSLMQISTRDKDWVVDTLQPWREDLQRLNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H S  + +  ++ LG+ +       T   A   G P  SLK          
Sbjct: 298 TDPNILKVFHGSTMDIVWLQRDLGLYV--VSLFDTYHAAVALGFPKRSLKFLLEKYAH-- 353

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---ELFKRL 177
              + ++   +     +   D          H   +       +   ++T    ++   L
Sbjct: 354 --YEADKKYQMADWRLRPLTDEMLKYARADTHYLLYIYDCLRNELLEKSTPKRNQIDYVL 411

Query: 178 IPL-----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                      ER ++         G+    DL+ +      +E+  + + + + 
Sbjct: 412 ERSKTEALQRYERPVYDTLGGQGAGGWY---DLLSRNSGQFTKEQFAVFKAVHEW 463


>gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
 gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
          Length = 237

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 39/150 (26%), Gaps = 32/150 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++  D ET    P    G     E   + L  +              Q  MP +    
Sbjct: 1   MREISFDTETTGLNP---RGGDRLVEIGGVELINH-VATGKSYHVYINPQRDMPEEAFRV 56

Query: 58  ----------LQYLR---DETVMCVA------HNSLFERIL----FKKTLGIDIPSKRWI 94
                             DE +  V       HN+ F+        ++     IP+ + +
Sbjct: 57  HGLSVEFLSDKPLFEHVADEFLEFVGDATLVIHNAAFDMGFINMELERAGRRTIPNSQVL 116

Query: 95  CTSVLARTNGLPS--SLKNACLALNFSEHL 122
            T  LAR        SL   C         
Sbjct: 117 DTLDLARRKHPSGPNSLDALCSRYGIDNSK 146


>gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
 gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
          Length = 205

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+    +   + +   +       L      S   + +L   L 
Sbjct: 20  IAVDTET--------MGLITPRD--RLCVVQISDGKGDEHLVRFNPGSDYAAPNLKAVLA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H   F+    +  LGI        CT + +R          LK     L   
Sbjct: 70  DPERLKLYHFGRFDIAALRHYLGIVAAP--VYCTKIASRLVRTYTDRHGLKELVREL--- 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L     K    S       ++         +Y   DV    +L   L  
Sbjct: 125 -----------LGQDISKQQQSSDWGGPVLSDAQ------KDYAASDVRFLHQLKAELDK 167

Query: 180 LSDGERDLWLLDQTINDRGYR 200
             + E  + L     +   +R
Sbjct: 168 RLEREGRMELAQACFDFLPHR 188


>gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307]
 gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307]
          Length = 217

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 50/209 (23%), Gaps = 34/209 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D E         +G+    +   + L     D + V         +    L + +
Sbjct: 31  KALAVDTE--------AMGLIHGRD--RLCLVQICDDQDRVCCIRIARGQSEAPLLKELM 80

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNF 118
               +  V H + F+  +     G+ I      CT V +R          L         
Sbjct: 81  EATGIEKVFHYARFD--VAAMASGLGIAVNPIFCTKVASRLARTYSPRHGLAAV------ 132

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G  L  +                   +  +    Y   DV        RL 
Sbjct: 133 ----VSELVGVDLDKQAQSS---------DWGRVEELSEQQLAYAANDVRYLLPARDRLE 179

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +   E    L  +         DLD   
Sbjct: 180 QMLVREERWSLAQRCFLCIPVFSDLDRFQ 208


>gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
 gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
          Length = 819

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 34/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y       L   +  +    + D  E  +    L    
Sbjct: 284 KEIAVDLE--------HHSYRSYL--GFTCLMQISTAEHD-YVVDTLELRSELQMLNDAF 332

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  +    ++ LG+ +       T   +R+ G P  SL +         
Sbjct: 333 TDPKIVKVFHGANMDIDWLQRDLGLYV--VNMFDTHQASRSLGFPHHSLASL-------- 382

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L       +     Y           +    Y + D      ++  +   
Sbjct: 383 ----------LSRYCQVEADKQ--YQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNE 430

Query: 181 S 181
            
Sbjct: 431 L 431


>gi|161617952|ref|YP_001595432.1| DNA polymerase [Enterobacteria phage phiEcoM-GJ1]
 gi|150416371|gb|ABR68749.1| DNA polymerase [Enterobacteria phage phiEcoM-GJ1]
          Length = 644

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/586 (10%), Positives = 132/586 (22%), Gaps = 104/586 (17%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYL 61
           DIET       +                       +   D   +     +      +Q  
Sbjct: 12  DIETTGLLEQMRKQAAPRLHN--------------IGYIDVLTREETVIEWTDRKSIQAF 57

Query: 62  RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALN 117
            D     + HN + F+     + LG D+     I T  ++           L+       
Sbjct: 58  LDTGPTLIMHNGATFDFEAL-RFLGYDVSKCTLIDTLFISWYLQPRRVKHGLEGYGEEFG 116

Query: 118 FSEHLTKMEEGKALIAR------FCKGSIDSPPYDC----TRANHVQAWQLFGEYC---- 163
             + + +  E +            CK  +                    + F EY     
Sbjct: 117 VPKPVIEDWENQTQEEYNHRVMEDCKIQLKLWEQQYIQLLKIYKSPSEVKRFVEYLMTKA 176

Query: 164 -----------KRDVEATRELFKRLIPLSDGERDLWLLDQT-INDRGYRIDLDLVLKLQE 211
                      K ++E       +L P+   + D        I +   +       K+  
Sbjct: 177 RQQVIQQRTRWKLNIEKALAFKAKLEPMIKEKTDALEASMPRIPEYVIKTRPAKCHKMNG 236

Query: 212 LIAQERKKLDE--------------DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
            ++    K                  I  L      ++     ++ +LF   G +     
Sbjct: 237 QLSATGIKWKAVCDANGLDWKDPDLAIKVLKGYKEPNAGSHVQIKDWLFS-LGWEPETFK 295

Query: 258 EGTLKSILSHSNITQLAKDLIL--------NRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
               K       I Q+                  +  +    +  L        RL    
Sbjct: 296 FDRNKETGETRQIPQITVKDEDGNPEICPSLHKLAERNPESGIQHLIGMGVYKHRLSVVN 355

Query: 310 QFYG-ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            F       G  +       N  R                    +        + +RS +
Sbjct: 356 GFLRDVDEDGYLTARCGGLTNTLR------------LKHRELVNLPSIRVFGGEELRSML 403

Query: 369 IA-SNGKKLVVADLAGIEARVLAWI--AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
            A     + + +DL  +E R         +   +K     +               ++ S
Sbjct: 404 EAWREDYEQLGSDLCSLEDRCKHHFQWMYDPEYVKKQLAPDYDAHLAIGVIGGFITEQES 463

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLW 484
           ++ +   K  +    +          A   G  +   +++      T     +A     W
Sbjct: 464 QDHKDGIKKCKQRPMF-----KTTNYACQYGAGVPTVARSAGCDQTTAARLHKAYWDLNW 518

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
              +         + G            ++  V + W  L      
Sbjct: 519 SIKEIAANTKVITVDG--------QMWQQNP-VNKFWYSLRTEKDR 555


>gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 35/184 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +           +L   L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQMSGGDGHAHMVQVERGQTEAPNLTAMLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G+        CT + ++          LK         E
Sbjct: 70  PNVLKIFHFGRFDIAALLNAFGVVTAP--VYCTKIASKLIRTYTDRHGLKTL-----LEE 122

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                                S     T     +  +   +Y   DV     L ++L   
Sbjct: 123 I---------------LRIDISKYQQQTDWGARELTEAQLDYAASDVLYLHRLREKLDGR 167

Query: 181 SDGE 184
              E
Sbjct: 168 LARE 171


>gi|327198220|ref|YP_004306796.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591746|dbj|BAJ09166.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 885

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 98/311 (31%), Gaps = 55/311 (17%)

Query: 2   SKLFIDIETRSPQPLPKV----GVWAYAEQAVITLCAYA--WDDEPVKLWDRTEQSAMPS 55
            ++  DIE         V      W   E   +   A A   D + V  W          
Sbjct: 7   RRVVFDIEATGLIGEGTVDYTASPWRLKEDFKLHC-AVARDIDTDEVFKW----GPDEVM 61

Query: 56  DLLQYLRDETVMCVAHNS-LFERILFKKTLG-------------IDIPSKRWICTSVLAR 101
           D  ++L +E  + + HN   ++ +  K T G             I+    + + T V+++
Sbjct: 62  DFAKWLGEECSVVIGHNIINYDLLALKLTCGLEYTIGWGETKDTINGNPVKIVDTLVISK 121

Query: 102 TNG----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                      +      L  ++        KA+       + ++P     +  H +   
Sbjct: 122 ALNPDRRPGHGIGAWGDKLGLAKI---DWRAKAVE--LGLITENAPRGAEFKTYHPE--- 173

Query: 158 LFGEYCKRDVEATRELFKRLI---------PLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              EY  RDV+    ++K L+         P    E  +  +    + RG+  D     +
Sbjct: 174 -MLEYNVRDVDVNLLVYKALMAEWGAWNWAPAVQTESYVAWVVTRQSHRGFFFD----ER 228

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTY-ALRMYLFLITGIDLVDMS---EGTLKSI 264
           L +   +E  +L E+   + + I+   + T      Y F  T    +         ++  
Sbjct: 229 LAQANVRELDQLMEECRAIVEPILPPKKPTKTEAAKYCFPKTQEKKIKGGLGLSSNMEKF 288

Query: 265 LSHSNITQLAK 275
           L       L +
Sbjct: 289 LEKMGGKHLPR 299


>gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916]
 gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916]
          Length = 214

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 24/195 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D E         +G+    +   + L      D+ V              L   +
Sbjct: 30  KALAVDTE--------AMGLIHGRD--RLCLVQICDPDDHVACVRIGLGQTEAPRLEALM 79

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL-N 117
             + V  V H + F+       LGI +      CT V +R          LK+  + L  
Sbjct: 80  ESKAVEKVFHFARFDVAALASGLGIAVNP--IFCTKVASRLARTYTPRHGLKDLVMELVG 137

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT--RELFK 175
                       A  + + +    +       AN  +      +  +  +      EL +
Sbjct: 138 VELDKQ------AQSSDWGRVDELTEAQLAYAANDARYLLPARDRLELMLRREGRWELAE 191

Query: 176 RLIPLSDGERDLWLL 190
           R  P      DL  L
Sbjct: 192 RCFPCIPVIADLDRL 206


>gi|167821772|ref|ZP_02453452.1| 34L [Burkholderia pseudomallei 91]
          Length = 263

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 34/201 (16%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDR------T 48
             L +DIET              V +     +  I      W DD  V   D        
Sbjct: 6   RILSLDIETSPILGYVWSLWKQNVSLNQIHSEWCILSFCAKWLDDPRVIYHDTSAQRNKE 65

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNS-LFE-RILFKKTLGIDIPS---KRWICTSVLARTN 103
           +   +   L + L    +  VA N   F+ R +  + + + +      R + T + AR  
Sbjct: 66  DDRRIVRKLWKLLDQADI-VVAQNGVKFDVRKINARFILLGMQPPSPFRVVDTMLEAR-- 122

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY---DCTRANHVQAWQLFG 160
                         F+ +  +    K       +     P +       A +  A     
Sbjct: 123 ----------KHFGFTSNKLEWLTAKLCKTHKKQKHAQFPGFELWREYLAGNPAAAAEMQ 172

Query: 161 EYCKRDVEATRELFKRLIPLS 181
            Y   DV +  EL+  L P  
Sbjct: 173 AYNTDDVLSLEELYLVLRPWI 193


>gi|47934808|gb|AAT39842.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 253

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 42/176 (23%), Gaps = 31/176 (17%)

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNR 281
               + +  +      +   L                   +S+L+     +  +   L  
Sbjct: 83  YTPIEWVDFNPTSRQHIARVLMAKGWKPNEFTDGGEPKVDESVLAKLPYPEAKQLARLFM 142

Query: 282 LASSGSAILKLN-TLSEAVSSDG---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337
           L      + + +    +          + G++   GA  TGR +        +P      
Sbjct: 143 LQKRIGQLAEGDQAWLKQARKSDLGIFIHGSVNPNGA-VTGRATHSYPNVAQVP------ 195

Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                                      R       G  L+ +D +G+E R L    
Sbjct: 196 -----------------GSQSEYGKECRQLFTVPPGWVLMGSDASGLELRCLGHFM 234


>gi|323145815|gb|ADX32056.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146001|gb|ADX32241.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 885

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 99/311 (31%), Gaps = 55/311 (17%)

Query: 2   SKLFIDIETRSPQPLPKV----GVWAYAEQAVITLCAYA--WDDEPVKLWDRTEQSAMPS 55
            ++  DIE         V      W   E   +   A A   D + V  W          
Sbjct: 7   RRVVFDIEATGLIGEGTVDYTASPWRLKEDFKLHC-AVARDIDTDEVFKW----GPDEVM 61

Query: 56  DLLQYLRDETVMCVAHNS-LFERILFKKTLG-------------IDIPSKRWICTSVLAR 101
           D  ++L +E  + + HN   ++ +  K T G             I+    + + T V+++
Sbjct: 62  DFAKWLGEECSVVIGHNIINYDLLALKLTCGLEYTIGWGETKDTINGNPVKIVDTLVISK 121

Query: 102 TNG----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
           T          +      L  ++        KA+       + ++P     +  H +   
Sbjct: 122 TLNPDRRPGHGIGAWGDKLGLAKI---DWRAKAVE--LGLITENAPRGAEFKTYHPE--- 173

Query: 158 LFGEYCKRDVEATRELFKRLI---------PLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
              EY  RDV+    ++K L+         P    E  +  +    + RG+  D     +
Sbjct: 174 -MLEYNVRDVDVNLLVYKALMAEWGAWNWAPAVQTESYVAWVVTRQSHRGFFFD----ER 228

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTY-ALRMYLFLITGIDLVDMS---EGTLKSI 264
           L +   +E  +L E+   + + I+   + T      Y F  T    +         ++  
Sbjct: 229 LAQANVRELDQLMEECRAIVEPILPPKKPTKTEAAKYCFPKTQEKKIKGGLGLSSNMEKF 288

Query: 265 LSHSNITQLAK 275
           L       L +
Sbjct: 289 LEKMGGKHLPR 299


>gi|254261387|ref|ZP_04952441.1| 38L [Burkholderia pseudomallei 1710a]
 gi|254220076|gb|EET09460.1| 38L [Burkholderia pseudomallei 1710a]
          Length = 800

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/389 (11%), Positives = 96/389 (24%), Gaps = 90/389 (23%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +   V  DG +   +  + ++ T R+S      QN                        
Sbjct: 428 GMLTLVGDDGIIHQKIN-HTSTVTARFSEQDPNLQN------------------------ 462

Query: 354 ADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
               G     V+S  ++      ++V +D   +E  + A ++G    I+    G D++  
Sbjct: 463 --VSGAGKSQVKSVFVSRWLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCV 520

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             ++      +                            +    G D  +    +     
Sbjct: 521 RVSQKEGITYED--------------------------AVLKCKG-DPSRGVAPLPEWEK 553

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +  S            A    ++    + + KA  A++  +              
Sbjct: 554 KRKGAKEFSFQRAYGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAYN---------A 604

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTATSQLMRE 590
            +      +RR  N   +      + +   L                SY  +   + + +
Sbjct: 605 AKTERIKKSRRPTN--NIQPHPDVKGLMCQLGKG---YSITPDNKVYSYRESPAPKWLVQ 659

Query: 591 RTYGGK------LTENIVQAISRDILCEGM-KNATKNGYD--------IVLTVHDEIVSE 635
           +    +      +    VQ    +     M                  +V  VHD +  +
Sbjct: 660 QGGMPQSFSPTEIANYEVQGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKD 719

Query: 636 TPDTPY-FSVGTLCSLMTKN---PSWAKG 660
              +    S   L + M        W  G
Sbjct: 720 AHKSVLFESSALLHACMLAASDFIEWYFG 748


>gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035]
 gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035]
          Length = 203

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 23/177 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L   ++      +L + L +
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQVSKGQTTAPNLARLLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+    +   G         CT + ++          LK     L   +
Sbjct: 70  PDVLKLFHFGRFDIAAMQNAFGALAAP--VYCTKIASKLIRTYTDRHGLKYLLQELLNID 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        +      DS               L     + +    RE    L
Sbjct: 128 IS--------KQQQSSDWGADSLSAAQLDYAASDVLYLHRLRDELNARLIREGRMEL 176


>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
 gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 44/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L + L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQMSGGDGNAHIVQVEKGQTEAPNLCRMLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN    L   +
Sbjct: 70  PNVLKLFHFGRFDIAAMYHAFGALAAP--VYCTKIASRLVRTYTDRHGLKNLTQELLGID 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      +                L       D    RE
Sbjct: 128 IS--------KQQQMSDWGAEELTEAQLDYAASDVLHLHKLREALDKRLARE 171


>gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
 gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +  +   +L + L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQMSDGDGNAHIIQVAKGQSEAPNLCRLLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
              + + H   F+        G    S    CT + +R          LKN    L   +
Sbjct: 70  PETLKLFHFGRFDIAAMYNAFG--ALSAPVYCTKIASRLVRTYTDRHGLKNLTQELLGID 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      +                L       +    RE
Sbjct: 128 IS--------KQQQMSDWGAEILTDAQLDYAASDVLHLHKLRKALNKRLERE 171


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           DIET         G+  YA+   I     A  +  V +    E    P  L Q L D+ +
Sbjct: 380 DIETT--------GLNWYAD--RICTVQLACGN-RVAVVQLPEGHT-PQRLSQILGDQNI 427

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLALNFSEHL 122
           + + HN+ F+           +  +   CT  L R          +L+        +  +
Sbjct: 428 LKIFHNARFDLRFMVYHW--SVIPQNVACTLELVRLLNPRERAGHTLREVLERY-LAVQI 484

Query: 123 TKM 125
            K 
Sbjct: 485 IKD 487


>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
          Length = 744

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 36/192 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           +L ID+E              Y     I      +  +    +     +  +   L    
Sbjct: 234 ELAIDLE-----------HHDYRSYYGIVCLMQISDREHDWIVDTIALREELYI-LNDIF 281

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  V  V H +  + I  ++ LG+ I       T   +R  G P  SL          +
Sbjct: 282 TDPNVTKVLHGAFMDIIWLQRDLGLYI--VGLFDTYHASRMLGFPKHSLAYLLERFANFK 339

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K +     I    K                        Y + D      +F +L   
Sbjct: 340 TSKKYQLADWRIRPLTKP--------------------MLAYARADTHFLLNIFDKLRNS 379

Query: 181 SDGERDLWLLDQ 192
              +  +  +  
Sbjct: 380 LLEQNKMSDVLH 391


>gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A]
 gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A]
          Length = 214

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 51/190 (26%), Gaps = 28/190 (14%)

Query: 6   IDIET----RSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           ID ET    RS          +G+    +   + L     + + V              L
Sbjct: 18  IDSETEIALRSSSALAVDTEAMGLIHGRD--RLCLIQICDEFDNVICIRIERNQHSAPHL 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L ++T+  V H + F+       L I++      CT + ++  G   S         
Sbjct: 76  KSILENKTIEKVFHFARFDVAALASNLNINVNP--IFCTKIASK-IGRTYSP-----RHG 127

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             E + +   G  L  +                      Q    Y   DV        +L
Sbjct: 128 LKEVVLE-TVGVELDKQAQSSDWGKVG---------DLTQKQLIYASNDVRYLLGAKHKL 177

Query: 178 IPLSDGERDL 187
             +   E   
Sbjct: 178 EEMLKREERW 187


>gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102]
 gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102]
          Length = 214

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 58/213 (27%), Gaps = 36/213 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           MS L +D E         +G+    +   + L   A  D+ V             +L + 
Sbjct: 29  MSALAVDTE--------AMGLIHGRD--RLCLVQIADADDRVCCIRIGLGQTSAPNLQRL 78

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALN 117
           L   +V  V H + F+        G+ I      CT V +R          LK+  + L 
Sbjct: 79  LEAASVEKVFHFARFDVAALA--SGLGIAVSPIFCTKVGSRLGRTYTPRHGLKDLVMEL- 135

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     G  L         D            +   +   Y   DV       ++L
Sbjct: 136 ---------VGVEL---------DKGAQSSDWGRVDELSDVQLAYAANDVRYLLPARQKL 177

Query: 178 IPLSDGE--RDLWLLDQTINDRGYRIDLDLVLK 208
             +   E   DL             +D     +
Sbjct: 178 EAMLRREGRWDLAQRCFGCIPVIADLDRMRFNQ 210


>gi|331697147|ref|YP_004333386.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326951836|gb|AEA25533.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 502

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 77/267 (28%), Gaps = 51/267 (19%)

Query: 194 INDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           +   G   D  +   L               +    L +DI       + +      +  
Sbjct: 131 MRAEGLPWDAAVHDALLTAALGPRPAGSARPRRLAALADDIATAFGRPV-NPDSPAEVLR 189

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
             F   G++L       LK +         A   +L     +                DG
Sbjct: 190 -AFGRVGVELPSTRSWVLKQV------DHPAVAPLLAYKELARLHSAHGWAWLRTWVHDG 242

Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363
           R R      G   +GRW+        +P+                               
Sbjct: 243 RFRPEYV-VGGVVSGRWATRGGGALQIPK------------------------------A 271

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           VR+ + A  G +LVVAD A +E R+LA +AG+    +A   G D     YA   +     
Sbjct: 272 VRAAVRADPGNRLVVADAAQLEPRILAAMAGDAALARA--GGRDQDSDLYAGLAHELFGG 329

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKT 450
              + RA  K+  L+  Y   +     
Sbjct: 330 AGPDGRAKAKLAVLSAIYGQTSGDAGA 356



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 29/134 (21%), Gaps = 14/134 (10%)

Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS--YLNTAT 584
                +    S  A     + R         V     +             +        
Sbjct: 341 AVLSAIYGQTSGDAGAHLALLRRRFPAAVEVVEAAARAGEEGRIVRSWLGRTCPPAAPGD 400

Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMK-------NATKNG--YDIVLTVHDEIVSE 635
            Q  R R  G      +VQA + +     +             G    +V   HDE++  
Sbjct: 401 EQPARARARGRFTRNFVVQATAAEW---ALVLLAELRAALHAAGDPARLVFFQHDEVLLH 457

Query: 636 TPDTPYFSVGTLCS 649
            P         L  
Sbjct: 458 GPADGAGLAARLVQ 471


>gi|76810071|ref|YP_333053.1| hypothetical protein BURPS1710b_1649 [Burkholderia pseudomallei
           1710b]
 gi|76579524|gb|ABA48999.1| 38L [Burkholderia pseudomallei 1710b]
          Length = 774

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/389 (11%), Positives = 96/389 (24%), Gaps = 90/389 (23%)

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            +   V  DG +   +  + ++ T R+S      QN                        
Sbjct: 402 GMLTLVGDDGIIHQKIN-HTSTVTARFSEQDPNLQN------------------------ 436

Query: 354 ADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
               G     V+S  ++      ++V +D   +E  + A ++G    I+    G D++  
Sbjct: 437 --VSGAGKSQVKSVFVSRWLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCV 494

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471
             ++      +                            +    G D  +    +     
Sbjct: 495 RVSQKEGITYED--------------------------AVLKCKG-DPSRGVAPLPEWEK 527

Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
                +  S            A    ++    + + KA  A++  +              
Sbjct: 528 KRKGAKEFSFQRAYGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAYN---------A 578

Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTATSQLMRE 590
            +      +RR  N   +      + +   L                SY  +   + + +
Sbjct: 579 AKTERIKKSRRPTN--NIQPHPDVKGLMCQLGKG---YSITPDNKVYSYRESPAPKWLVQ 633

Query: 591 RTYGGK------LTENIVQAISRDILCEGM-KNATKNGYD--------IVLTVHDEIVSE 635
           +    +      +    VQ    +     M                  +V  VHD +  +
Sbjct: 634 QGGMPQSFSPTEIANYEVQGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKD 693

Query: 636 TPDTPY-FSVGTLCSLMTKN---PSWAKG 660
              +    S   L + M        W  G
Sbjct: 694 AHKSVLFESSALLHACMLAASDFIEWYFG 722


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 35/202 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + ID ET        +G+    +   + L   +  D    L    + +     L   L
Sbjct: 18  SIVAIDTET--------MGLKTQRD--RLCLVQLSSGDGNAHLVQIAQPAKPSPVLAALL 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D  V  + H + F+         I        CT + ++          LK  C  L  
Sbjct: 68  ADPAVTKLFHFARFDLAALIHY--IGAVEGDIYCTKIASKLARTYTDRHGLKELCREL-- 123

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       L     K    S     T             Y   DV     + ++L 
Sbjct: 124 ------------LQIDISKQQQSSDWGAETLTIDQ------QNYAAGDVLYLHAIREKLS 165

Query: 179 PLSDGERDLWLLDQTINDRGYR 200
            + + E  + L +        R
Sbjct: 166 YMLERENRMALANACFGFLPER 187


>gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
 gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
          Length = 214

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 51/190 (26%), Gaps = 28/190 (14%)

Query: 6   IDIET----RSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           ID ET    RS          +G+    +   + L     + + V              L
Sbjct: 18  IDSETEIALRSSSALAVDTEAMGLIHGRD--RLCLIQICDEFDNVICIRIERNQHSAPHL 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L ++T+  V H + F+       L I++      CT + ++  G   S         
Sbjct: 76  KSILENKTIEKVFHFARFDVAALASNLNINVNP--IFCTKIASK-IGRTYSP-----RHG 127

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             E + +   G  L  +                      Q    Y   DV        +L
Sbjct: 128 LKEVVLE-TVGVELDKQAQSSDWGKVG---------DLTQKQLIYAANDVRYLLGAKHKL 177

Query: 178 IPLSDGERDL 187
             +   E   
Sbjct: 178 EEMLKREERW 187


>gi|167462371|ref|ZP_02327460.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 573

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 65/262 (24%), Gaps = 63/262 (24%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQS-------------------- 51
                GV +Y +        ++                                      
Sbjct: 134 DFEGTGVDSYID----LSIGFSIWLPLLGEGYYLPYGHVDMRGVEGFEFLNDTFAYKDSG 189

Query: 52  ------AMPSDLLQYLRDETVMCVAH--NSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
                  +   +  YL   T     H  ++ ++  +  +  G +I    W  T       
Sbjct: 190 PQLTRSKVLDAIRPYLAQPTHGKTFHMGSARYDLHV-ARNDGYEIRGCVW-DTLDAMHLL 247

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCK--GSIDSPPYDCTRANHVQAWQLFGE 161
                           + + K          F               R+    + +L G 
Sbjct: 248 NEHE------EKYGLKKIVEKYG------KYFDIPGPIYTFEDMFGNRSPAPFSVELVGI 295

Query: 162 YCKRDVEATRELFKR------------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
           Y  +DV    +LF+             L   +  +  L  +D  +   G+ IDLD +  L
Sbjct: 296 YAIKDVLYGWKLFEWQVEMMRKSPGCLLDCYAKIDSKLPEVDVFMARCGFEIDLDGLKAL 355

Query: 210 QELIAQERKKLDEDIVKLTDGI 231
           +E      ++   D++K     
Sbjct: 356 EEEFIPALEQAKHDVIKTYGID 377


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 66/254 (25%), Gaps = 73/254 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGV------------------WAY--------AEQAVITLCA 34
           M ++ +D ET   +      V                    Y        A    +T   
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDCDFEAGAQEVTGLT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGID 87
             +  +            +  + L+Y+  +    + HN+ F+              LG  
Sbjct: 61  LEFLADKPAF------EEIVDEFLEYI--DGAELIIHNAAFDLGFLDYELSRCGAHLGRI 112

Query: 88  IPSKRWICTSVLA--RTNGLPSSLKNACLALNFS-----------------EHLTKMEEG 128
           +     + T +LA  R  G  +SL   C  L                    +    +  G
Sbjct: 113 VDRCSVVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSG 172

Query: 129 KALIARFCKGSIDSPPYDCTRANHV-------------QAWQLFGEYCKRDVEATRELFK 175
           +  I      +    P   T +                +         +   +A R L+ 
Sbjct: 173 QEEIGFGDVEAASRGPVVTTVSFAPVSGERPRISAQPEELEAHARRLERLRKKAGRALWD 232

Query: 176 RLIPLSDGERDLWL 189
           +  PL + E +L  
Sbjct: 233 QYEPLPEPEAELQP 246


>gi|88856925|ref|ZP_01131576.1| DNA polymerase A [marine actinobacterium PHSC20C1]
 gi|88813801|gb|EAR23672.1| DNA polymerase A [marine actinobacterium PHSC20C1]
          Length = 517

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 11/182 (6%)

Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388
           NL        ++        RG      L   S   RS II  +G   +  D    E  V
Sbjct: 261 NLHDDGHVFPMVHLRGAKTGRGSVTGPALTSLSKKYRSLIIPEDGAVFISLDFDRAEPTV 320

Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME--LALGYQGGAK 446
            A ++ ++   +A +  +               ++  ++  A        L + Y  G  
Sbjct: 321 AAALSQDEGLQEALSTTDVYRELAV----KVFGEQAREDDIARATCKTIFLGILYGRG-- 374

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     L + +        S ++ +    ++   ++             G    + 
Sbjct: 375 ---AQGLSQQLGISKAEATETIRSVWDSFPALNAYCEGLKADAIAGKELRTPWGRLLPVP 431

Query: 507 KK 508
            +
Sbjct: 432 NR 433


>gi|238801836|ref|YP_002922886.1| putative DNA polymerase [Enterobacteria phage WV8]
 gi|216263049|gb|ACJ71917.1| putative DNA polymerase [Enterobacteria phage WV8]
          Length = 906

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/448 (12%), Positives = 120/448 (26%), Gaps = 58/448 (12%)

Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275
           ER  L     +    I  +          L          ++E +  +I           
Sbjct: 467 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 525

Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335
             +++R  +  ++          +  DGRL       GA   G  +G + Q         
Sbjct: 526 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 571

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
                            +     +  + +R+  I   G  +V  D+   +  +L    G+
Sbjct: 572 ------------YGIVNVPSGAAVYGEPMRAVWICEEGTNVVSVDMNSAQLVLLCNFMGD 619

Query: 396 DWKIKAFANGEDIYVTTYAK----AFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVF 448
               KA   G++       +          + ++ E           +L + Y G     
Sbjct: 620 KDFTKAVTQGKEEIEFIRQEDGRYYCKHFDEYLNPEIDKYLRYDSENDLYVVYSGTDAHT 679

Query: 449 KT---MASHCGLDLQQFSQNVKSTSTFE---DWEQAESHHLWMQDQYPEFAVKDKL---I 499
                 + +   D+             E     ++A++    +     +      +    
Sbjct: 680 LNSIYFSLNDEQDILTCRATQDENLLHEISKGRKKAKNGIYALLFGAGDEKFAKTIKAAT 739

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                L K+ +  +   + +L  DL   +    +    +  +  A      ++     + 
Sbjct: 740 TQEGALTKQTYFIRLPKIKKLLDDLEADYKATKKALEEVFGKTAAISKGGFVKVAGAWLW 799

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
              P    L Y  +  +    N A +   R     G +  N  Q                
Sbjct: 800 CKSPHKL-LNYLLMGSEAQIQNEAINLACRRMIDEGLMKLNGRQ--------------PA 844

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTL 647
            G  ++   HDE   E P++    V  +
Sbjct: 845 IGARLLCAYHDETSWECPESMTAEVKAV 872


>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
 gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
          Length = 203

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 23/178 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET        +G+  + +   + +   +  D    L    +      +L   L 
Sbjct: 19  IVAIDCET--------MGLHPHRD--RLCVIQLSDGDGNAHLVQVAKGQTAAPNLCALLE 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H   F+        G         CT + ++          LKN    L   
Sbjct: 69  DPNTLKLFHFGRFDIAAMYHAFGALTAP--VYCTKIASKLVRTYTDRHGLKNLLQELLGI 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +             +      DS               L G   K DV   RE    L
Sbjct: 127 DIS--------KQQQSSDWGADSLTEAQVDYAASDVLYLHGVKDKLDVMLAREGRTEL 176


>gi|330883874|gb|EGH18023.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 108

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           D E  L  +   I  +G  +D +L+      +  +   L+ +   +      +      L
Sbjct: 1   DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQL 59

Query: 242 RMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLIL 279
            + L+   G+ ++  +      T +++L+ S        L+L
Sbjct: 60  GVILYEKLGMPILSKTATGQASTAEAVLALSWERPHLAPLML 101


>gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 23/173 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ET        +G+  + +   + +   +  D    +    +  A   +L   L 
Sbjct: 19  IVAIDCET--------MGLNPHRD--RLCVIQMSGGDGDCHIVQVEKGQASAPNLCAMLE 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D  ++ + H   F+        G         CT + +R          LKN C  L   
Sbjct: 69  DPNILKLFHFGRFDIAAMYHAFGALAAP--VYCTKIASRLVRTYTDRHGLKNLCQELLGV 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           +             +      ++               L       D    RE
Sbjct: 127 DIS--------KQQQMSDWGAETLTDAQLDYAASDVLYLHRLREALDGRLARE 171


>gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
 gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
          Length = 214

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 20/188 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E         +G+    +   + L     + + V              L   L +
Sbjct: 32  LAIDTE--------AMGLMHGRD--RLCLVQICDESDNVICIRIERNQKSAPLLKNLLEN 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL-NFS 119
            ++  + H + F+    +  + +DI      CT V +   RT      LK   + L N  
Sbjct: 82  PSIQKIFHFARFDVAALE--VNLDIKVTPIFCTKVASKIGRTYSPRHGLKEVVMELVNVE 139

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                       +            Y      ++   +          E   EL  +   
Sbjct: 140 LDKQAQSSDWGAVEDLS---AKQLAYAANDVRYLIKAKE-KLEHMLKREGRWELTTKCFQ 195

Query: 180 LSDGERDL 187
                 +L
Sbjct: 196 CIPVMSEL 203


>gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 579

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 54/199 (27%), Gaps = 28/199 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQY 60
           + +D E          GV        +TL   +  D    L+D  +   +      L + 
Sbjct: 392 IGLDCE----------GVGLGRAGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKI 441

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART----NGLPSS----LKNA 112
           L   +++ V H+   +        G  +  K    TS+  RT         S     K  
Sbjct: 442 LEHNSILKVIHDCKSDAYSL--YHGFGVKLKNVFDTSIAMRTIMEQLNRNRSYQVGFKAL 499

Query: 113 CLALNFSEHLTKMEEGKALIA----RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           C  L         +  K ++        +   +   Y            ++ +       
Sbjct: 500 CELLGEGASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLVPSVYLKINGMLTP 559

Query: 169 ATRELF-KRLIPLSDGERD 186
             ++LF        +  + 
Sbjct: 560 LWQDLFTWSCKDTLENMQR 578


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAV 56

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L++   +    VAHN++F+         +    +I  +R
Sbjct: 57  HGISNEQLLDKPTFAEILDEFLEFF--DGAKLVAHNAMFDLGFINAELARLGQAEIQVER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 115 VVDTLALARRKHPMGPNSLDALCKRYGIE 143


>gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
 gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
          Length = 204

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  +    +      +  D    +           +L + L D
Sbjct: 20  VAIDSET--------MGL-RFRRDPLCV-VQLSAGDGNAHVVRLNRPGYDCPNLKRLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNA 112
             V  + H   F+  +F   LG++       CT + ++          LK+ 
Sbjct: 70  PAVTKIFHFGRFDIGMFLLHLGVETRP--VYCTKIASKLARTYTDRHGLKDV 119


>gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
 gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
          Length = 211

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 28/206 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L ID E         +G+    +   + L     + +          ++    L + L
Sbjct: 27  SYLAIDTE--------AMGLIHGRD--RLCLVQICNEFKRTSCIKIELNTSSSPHLKKLL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE +  + H + F+    K    ++I +K   CT + +                     
Sbjct: 77  EDEKITKIFHYARFDVAALK--CNLEINTKNIFCTKIAS----------KLARTYTNKH- 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         ++    +   +Y   DV    E   +L  + 
Sbjct: 124 -----GLKDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVIL 178

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
           + E    L  +         DLD++ 
Sbjct: 179 EREDRYELAQKCFETVSVHADLDILK 204


>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
 gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
          Length = 204

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 44/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQMSSGDGDAHLVQIAKGQTDAPNLTAMLTN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN    L   +
Sbjct: 70  PDVLKLFHYGRFDIAALYHRFGALAAP--VYCTKIASRLVRTYTDRHGLKNLTQDLLGQD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      ++               L       D    RE
Sbjct: 128 IS--------KQQQMSDWGAETLTRAQMDYAASDVLHLHRLRDALDQRLVRE 171


>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
 gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
          Length = 204

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 53/215 (24%), Gaps = 42/215 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +      +L   L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQLSDGDGNAHIVQVAKGQTEAPNLCAMLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
              + + H   F+        G         CT + +R          LKN    L    
Sbjct: 70  PETLKLFHFGRFDIAAMYHAFGALTAP--VYCTKIASRLVRTYTDRHGLKNLTQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                            G   S     +        +   +Y   DV     L + L   
Sbjct: 124 ----------------IGVDISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREALNKR 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215
            + E         +       D   +    +L   
Sbjct: 168 LEREGR-------MEMAQACFDFLPMRAKLDLAGW 195


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 17/114 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQSAMPSDLLQYL 61
           + ID ET    P              + L   +  D         +   +    +L + L
Sbjct: 20  VAIDTETMGLNPFRD----------RLCLVQLSNGDGSADLVQIPQGADATTAPNLTRLL 69

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNA 112
            D  +  + H   F+  + + T    +  +   CT + +R          LK+ 
Sbjct: 70  ADPAITKLFHFGRFDIAVLQHTF--HVMPQPVWCTKIASRLVRTYTDRHGLKDL 121


>gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone
           HF10-11H11]
          Length = 211

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 58/206 (28%), Gaps = 28/206 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L ID E         +G+    +   + L     +            ++    L   L
Sbjct: 27  SYLAIDTE--------AMGLIHGRD--RLCLVQICNEFNRTSCIKIELNTSSSPHLKALL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+ +  + H + F+    K    + I +K   CT + +                     
Sbjct: 77  EDDKITKIFHYARFDVAALK--CNLKINTKNIFCTKIAS----------KLARTYTNKH- 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         ++    +   +Y   DV    E   +L  + 
Sbjct: 124 -----GLKDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVIL 178

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
           + E    L  +         DLD++ 
Sbjct: 179 ERENRYELAQKCFETVSVHADLDILK 204


>gi|321470528|gb|EFX81504.1| hypothetical protein DAPPUDRAFT_303477 [Daphnia pulex]
          Length = 812

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 38/234 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQ 59
             + +D+E          GV        +TL         + ++D     A+ S   L  
Sbjct: 362 KVVSLDLE----------GVNVGGNNGEVTLAVIGLPSGVIYIFDLITCPAIMSQGMLAN 411

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----------PSS 108
            +  + ++ V H+   +       LG ++  +    T        L            +S
Sbjct: 412 LIISKEIVKVCHDCKNDSAAL--NLGWNVKLENVFDTQAAHAVVQLQETGRAVHKVKTTS 469

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L   C   +   +  K                     D          +    Y   DV 
Sbjct: 470 LNAMCENYDLPTNPFKELV------------KTIYKRDQRFWARRPLTRDMILYAAYDVM 517

Query: 169 -ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221
                L+  L      E    L +    +    +  D V + ++    E + L+
Sbjct: 518 PLVPHLYDLLNNTVKPEFRPLLEELCAENLLALLQPDEVKRSKKERKMEMEVLE 571


>gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
 gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
          Length = 203

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 46/178 (25%), Gaps = 25/178 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D    L           +L + L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCLVQLSGGDGNCHLIQVAGGQTTAPNLCKVLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALNFS 119
             V+ + H   F+        G         CT + ++          LKN     L   
Sbjct: 70  PQVLKLFHFGRFDIAAMLNAFGTVTAP--VYCTKIASKLIRTYTDRHGLKNLLQEFLRVD 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         +      D                L     + ++   REL   +
Sbjct: 128 ISKF---------QQQSDWGADQLSKAQLDYAASDVLYLHKLRDELNIRLARELRTDM 176


>gi|189236910|ref|XP_968888.2| PREDICTED: similar to DNA polymerase subunit gamma 1, mitochondrial
           [Tribolium castaneum]
          Length = 1093

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 90/316 (28%), Gaps = 36/316 (11%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P+      +  + ++      + A P       +R+ + A  G  ++ AD+   E  + 
Sbjct: 711 IPQVVVCGTLTRRAVEPTWMTASNARP-DRVGSELRAMVQAPPGYNIIGADVDSQELWIA 769

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
           + I   D      A        +  KA +T +  V+       R   KV+  A  Y  G 
Sbjct: 770 SIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAVGISRDHAKVINYARIYGAGQ 829

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
              + +       +       K+   F   +    + L  +                   
Sbjct: 830 NFAERLLKQFNPSMSDGEAKTKAAKMFALTKGKRIYRLKKE------------FVLEYYD 877

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              +     +      + + + F      GG+ SA       RL      ++      + 
Sbjct: 878 QNYSHWQAFEIAKTWNRRIDDMFERPKWVGGTESA----MFNRLESIATSQEPRTPFLNG 933

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGY 622
           R     + K         T                +VQ+ + D   ++   M+       
Sbjct: 934 RLSRALEPKLSSDDRFLPTR------------INWVVQSGAADFLHLMLVCMRWIMGENA 981

Query: 623 DIVLTVHDEIVSETPD 638
              L+ HDE+    P+
Sbjct: 982 RFCLSFHDEVRYLVPE 997


>gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
 gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
          Length = 204

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 46/172 (26%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L   ++      +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQMSGGDGDAHLVQISKDQTEAPNLTSMLTN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          LKN    L   +
Sbjct: 70  PDVLKLFHYGRFDIAALYHRFGALTAP--VYCTKIASRLVRTYTDRHGLKNLTQDLLGQD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +      D+               L       D+   RE
Sbjct: 128 IS--------KQQQMSDWGADTLTRAQMDYAASDVLHLHRLRGALDLRLARE 171


>gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
 gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
          Length = 205

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 24/178 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET    PL             + L   +       L      S+  +  L   L 
Sbjct: 20  VAVDTETMGLNPLRD----------RLCLVQISDGSGDEHLVRFRPGSSYDAPVLKAILA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H + F+    ++ LG  + +    CT + ++          LK     L   
Sbjct: 70  DPERLKLFHFARFDIAALQQALG--VVTTPVYCTKIASKLVRTYTDRHGLKELVRELLGQ 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           E        K   +     +  S       A+ V+      E    D    RE    L
Sbjct: 128 EVS------KQQQSSDWGAAELSEAQRDYAASDVRFLHAMKE--ILDARLAREGRTEL 177


>gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
 gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
          Length = 214

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 36/213 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M  L +D E         +G+    +   + L   A   + V         +   +L + 
Sbjct: 29  MPCLAVDTE--------AMGLIHGRD--RLCLVQIADAQDRVACVRIALGQSTAPNLQRL 78

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALN 117
               +V  V H + F+        G+DI  +   CT V +R          LK+  + L 
Sbjct: 79  FEAPSVEKVFHFARFDVAALA--AGLDIAVQPLFCTKVGSRLGRTYTPRHGLKDLVMEL- 135

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     G  L         D            +   +   Y   DV        +L
Sbjct: 136 ---------VGVEL---------DKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNKL 177

Query: 178 IPLSDGE--RDLWLLDQTINDRGYRIDLDLVLK 208
             +   E   +L             +D     +
Sbjct: 178 ETMLRREGRWELAQRCFACIPVMAELDRMRFNQ 210


>gi|291335901|gb|ADD95496.1| type I DNA polymerase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 179

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 18/185 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D+E+                   +        DE     D+ +Q A+   + Q + D
Sbjct: 2   LVFDLESNGLLDDVTCIHCLVIHDTEV--------DETYVYNDQGDQEAITRGV-QLIED 52

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLART-----NGLPSSLKNACLALN 117
             ++   HN   ++    +K      P    + T +L+R        +    K     + 
Sbjct: 53  AEII-CGHNVIGYDIPCLQKIYPWFNPKGLVVDTLLLSRLYHADMLIIDRGDKVKGKYVG 111

Query: 118 -FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            F    + M    +L +   +   +         +     Q   +YC +DV  T +L   
Sbjct: 112 KFKGMPSPMWGRHSLESYGYR-LKEFKGSFGKDTDWQNWSQEMQDYCVQDVNVTTKLCDH 170

Query: 177 LIPLS 181
             P  
Sbjct: 171 FQPYL 175


>gi|312195229|ref|YP_004015290.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
 gi|311226565|gb|ADP79420.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
          Length = 586

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 72/232 (31%), Gaps = 53/232 (22%)

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             +R+     A    +    GID+ D   G    + + S    +  +L+  R A   +  
Sbjct: 258 VDLRNPASVRAALAAV----GIDVPDTRSG---RLRALSAAHPVIDELLAWRKAERIATT 310

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L+  V +DGRLRG       +     +       NLP                  
Sbjct: 311 YGHRWLATHVGADGRLRGRWHGSDGAAGRMTA--DAGLHNLP------------------ 350

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R  ++A  G + V ADL  IE RVLA ++G+    +A    +   
Sbjct: 351 ------------AEMRVAVVAEPGHRFVRADLGQIEPRVLAVVSGDPELTRATRQDDLYA 398

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGL 457
                     P+       R   KV  LA  Y           + M    G+
Sbjct: 399 ----------PVAARLGVDRPTAKVAVLAAMYGQTTGAAGQALRQMRETYGV 440



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644
              YG      +VQ  + ++         +     G  IVL +HDE++ + P     + 
Sbjct: 490 AAAYGRFARNAVVQGAAAELFKAWAVTVRQALIPLGGTIVLCLHDELLLQVPVQTAEAA 548


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 62/228 (27%), Gaps = 53/228 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAV 56

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L++   +    VAHN++F+         +    +I S+R
Sbjct: 57  HGISNEQLLDKPTFAEVLDEFLEFF--DGAKLVAHNAMFDLGFINAELARLGQAEIQSER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS-----------------EHLTKMEEGKALIA 133
            I T  LAR      P+SL   C                       E   ++  GK    
Sbjct: 115 IIDTLALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIGGKQTAL 174

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
               G   S          +           R  +A R     L+   
Sbjct: 175 GLSMGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKL 222


>gi|256811514|ref|YP_003128883.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
 gi|256794714|gb|ACV25383.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 27/196 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M K  IDIET    P+             I        D  + L D   +  +  +    
Sbjct: 1   MVKAIIDIETTGLNPMEH----------RIVAIGVRIGDRTIILMD-ESEYYLLVNFWDT 49

Query: 61  LRDETVMC-VAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +  E +   +  N  F+    K ++L   +  K +                 +    LN 
Sbjct: 50  VEKEGIEKIIGFNIDFDWQFLKLRSLYHRLKIKHFR----------KYQGRVDLRQILNG 99

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           S    K  +G  L+       ID P  D   +   + W+ F E  + D EA R++ + L 
Sbjct: 100 SGGQYK--KGTKLVDYCRFLGIDVPEDDANGSEIPELWKKFEE--EGDEEAKRKICEHLK 155

Query: 179 PLSDGERDLWLLDQTI 194
              +   +L+ +    
Sbjct: 156 RDLERTWELYKILVDC 171


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQ-------- 50
           M ++  D ET    P     V        I           V     D            
Sbjct: 1   MREIVFDTETTGLDPSKGDRVVE-IGAVEILNL---IPTGRVFHAYIDPERDMPEEAFRV 56

Query: 51  --------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKR 92
                           +  + + ++ D     VAHN+ F+         +     +   R
Sbjct: 57  HGLSREFLSQHRKFREIAEEFIDFIEDS--PMVAHNAEFDVRFINAEFSMLNFAPLAPAR 114

Query: 93  WICTSVLARTN--GLPSSLKNACLALNFS 119
            + T  +AR    G P+SL   C      
Sbjct: 115 IVDTLAIARRLHPGSPASLDALCQRYGID 143


>gi|169767462|ref|XP_001818202.1| exosome complex exonuclease Rrp6 [Aspergillus oryzae RIB40]
 gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae]
          Length = 760

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y  Q +++L   +  D+   +            L +  
Sbjct: 240 KEIAIDLE--------HHDVHSY--QGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVF 289

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D +++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 290 ADPSILKVFHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 339


>gi|148807528|gb|ABR13567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 33/169 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I +         L     A
Sbjct: 47  FNVGSRKRIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKTTYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                           RS      G KL+  D +G+E R+LA    ++ 
Sbjct: 144 ------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
 gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
          Length = 230

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 42/152 (27%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M ++ +D ET    P     + ++G                             + +MP 
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGAVELWNH---------VPTGETYHVYINPERSMPQ 51

Query: 56  DL-------------LQYLRD---------ETVMCVAHNSLFERILFKKTLGI-DIPSKR 92
           +                  RD         +    V HN+ F+       LG  +IP+  
Sbjct: 52  EAFEVHGLGDDFLRDKPVFRDVARGFVEFVKDAKLVIHNASFDMKFINAELGWLNIPAIP 111

Query: 93  WI---CTSVLA--RTNGLPSSLKNACLALNFS 119
           W     T  +A  R  G P+SL   C      
Sbjct: 112 WDQAIDTLAIARQRFPGSPASLDALCRRFGID 143


>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
 gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
          Length = 377

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 49/195 (25%), Gaps = 35/195 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +L  D+E  S     +           + L   A D     + D      + S L    
Sbjct: 24  KRLAFDLEADSMHHFKE----------KVCLVQMA-DPNDSFVVDPLSIDDL-SVLKPVF 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120
            D  +  V H S F+     +   I +       T +  R  G    SL           
Sbjct: 72  EDPAITKVFHGSDFDIRSLDRDFDIHVN--NLFDTEIACRFLGIQKRSLAALLEKHF--- 126

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L  RF K      P            +    Y   DV    EL   L   
Sbjct: 127 ----DLT---LDKRFQKTDWSRRP----------LSKEMIAYSVNDVAYLLELSDILKKR 169

Query: 181 SDGERDLWLLDQTIN 195
            + E  L   ++   
Sbjct: 170 LEDEGRLAWAEEEFE 184


>gi|115396098|ref|XP_001213688.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 761

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 33/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y    +++L   +  ++   +            L +  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTREKDWVVDTLKPWREELQMLNEVF 294

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D +++ V H S  + I  ++ LG+ I       T   A     P  SL           
Sbjct: 295 TDPSILKVLHGSSMDIIWLQRDLGLYI--VGMFDTYHAACALNYPKRSL----------- 341

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                   K L+ +F     D                +F +Y + D      ++  L   
Sbjct: 342 --------KYLLQKFVNFEADKRYQMADWRIRPLPSGMF-DYARSDTHYLLHIYDHLRNE 392

Query: 181 S 181
            
Sbjct: 393 L 393


>gi|270006334|gb|EFA02782.1| hypothetical protein TcasGA2_TC008519 [Tribolium castaneum]
          Length = 1050

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 90/316 (28%), Gaps = 36/316 (11%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P+      +  + ++      + A P       +R+ + A  G  ++ AD+   E  + 
Sbjct: 668 IPQVVVCGTLTRRAVEPTWMTASNARP-DRVGSELRAMVQAPPGYNIIGADVDSQELWIA 726

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
           + I   D      A        +  KA +T +  V+       R   KV+  A  Y  G 
Sbjct: 727 SIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAVGISRDHAKVINYARIYGAGQ 786

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
              + +       +       K+   F   +    + L  +                   
Sbjct: 787 NFAERLLKQFNPSMSDGEAKTKAAKMFALTKGKRIYRLKKE------------FVLEYYD 834

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
              +     +      + + + F      GG+ SA       RL      ++      + 
Sbjct: 835 QNYSHWQAFEIAKTWNRRIDDMFERPKWVGGTESA----MFNRLESIATSQEPRTPFLNG 890

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGY 622
           R     + K         T                +VQ+ + D   ++   M+       
Sbjct: 891 RLSRALEPKLSSDDRFLPTR------------INWVVQSGAADFLHLMLVCMRWIMGENA 938

Query: 623 DIVLTVHDEIVSETPD 638
              L+ HDE+    P+
Sbjct: 939 RFCLSFHDEVRYLVPE 954


>gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
 gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
          Length = 214

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 55/211 (26%), Gaps = 36/211 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D E         +G+    +   + L   A  ++ V             +L +   
Sbjct: 31  RLAVDTE--------AMGLIHGRD--RLCLVQIADAEDRVACVRIGLGQTEAPNLKRLFE 80

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFS 119
             TV  V H + F+        G+ I      CT V +R          LK+  + L   
Sbjct: 81  APTVEKVFHFARFDVAALA--AGLSIEVNPVFCTKVGSRLGRTYTPRHGLKDLVMEL--- 135

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                   G  L         D            +       Y   DV       +RL  
Sbjct: 136 -------VGVEL---------DKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEQ 179

Query: 180 LSDGE--RDLWLLDQTINDRGYRIDLDLVLK 208
           +   E   DL             +D     +
Sbjct: 180 MLRREGRWDLAQRCFQCVPVVAELDRLRFHQ 210


>gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
 gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
          Length = 976

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQY 60
           + +D E          GV    E+  +TL   +  D    L+D  +   +      L + 
Sbjct: 735 IGLDCE----------GVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKT 784

Query: 61  LRDETVMCVAH--NSLFERILFKKTLGIDIPSKRWICTSVLART----NGLPS----SLK 110
           L  ++++ V H  NS  +        G+ +       TS+   T               K
Sbjct: 785 LEHDSILKVIHACNS--DTYSLYHDFGVKLK--NVFDTSIAMFTIMEQLNRNHPYQIGYK 840

Query: 111 NACLALNFSEHLTKMEEGKALIA---RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
             C  L  +      +  K +I     +    +         ++ +        Y K + 
Sbjct: 841 ALCELLGEAASHKDDDFKKKMIETEDFWKIRPLTEEMIYYAASDTLCLVPTV--YLKLNG 898

Query: 168 EATRELFKRLIPL 180
             T  +++ L   
Sbjct: 899 MLT-RVWRDLFTW 910


>gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803]
 gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803]
          Length = 214

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L     D + V         +    L   +  
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQICDDKDQVACIRIALGQSEAPRLKALMEA 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLAL 116
            T+  V H + F+        G+ I      CT V   LART      LK+  + L
Sbjct: 82  ATIEKVFHFARFDVAALA--TGLGIRVNPIFCTKVGSRLARTYTPRHGLKDLVMEL 135


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 43/149 (28%), Gaps = 30/149 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWD-------------DEPVKLW- 45
           M ++ +D ET    P          E   + L    A                E      
Sbjct: 1   MREIVLDTETTGFDP---ESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVH 57

Query: 46  ----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG-IDIPSKRW---IC 95
               D        +++ Q   D       V HN+ F+       LG I++P   W   I 
Sbjct: 58  GLGDDFLRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117

Query: 96  TSVLA--RTNGLPSSLKNACLALNFSEHL 122
           T  +A  R  G P+SL   C         
Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTS 146


>gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 28/183 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E+             Y  +  + L      D+ V +      +    +L + L D
Sbjct: 22  VAIDAESLGLN---------YKGRDKLCLLQLCSGDDEVYIVQFDRNNYKSPNLCKILND 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ +AH + FE  + K  L   I  +   CT + ++                      
Sbjct: 73  NNILKIAHFARFEMGILKYYLNAKI--ENIYCTKIASKL-----------------GRTY 113

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
             + G   I +       +     +        +   +Y   DV    +L ++L  +   
Sbjct: 114 TDKHGLYDITKELLNITLNKSQQSSDWGLKDLSEEQKQYAALDVLYLHKLKEKLDLMLRR 173

Query: 184 ERD 186
           E+ 
Sbjct: 174 EKR 176


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 75/277 (27%), Gaps = 86/277 (31%)

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445
            R++     +   +++F NGEDI+  T +  +N P+++V+KE+R   K +   L +    
Sbjct: 1   MRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESP 60

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
             F                                              K+ +  +  E 
Sbjct: 61  FSFAG--------------------------------------------KNNMEVSEAEE 76

Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
           + + +      V     ++ E              RR     +   ++ K +        
Sbjct: 77  IFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQSTDKKIKNE-------G 129

Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATK 619
            R  +                              I+Q     +    +        +  
Sbjct: 130 LRQSF----------------------------NTIIQGSGSFLTNMSLTYLDDFIQSRN 161

Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655
               ++ TVHD I+ + P      +  +   +M   P
Sbjct: 162 LKSKVIATVHDSILIDCPPEEAKIMAKVTIHIMENLP 198


>gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45]
 gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45]
          Length = 204

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 54/200 (27%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L           +L + LRD
Sbjct: 20  VAIDCET--------MGLDPHRD--RLCVVQLSGGDGNAHLVQVARGQTEAPNLCRLLRD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           ETV+ + H   F+        G         CT + +R          LK     L    
Sbjct: 70  ETVLKLFHFGRFDIAAMYHAFGALAAP--VYCTKIASRMVRTYTDRHGLKALTQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S                   Y   DV    +L  RL  +
Sbjct: 124 ----------LSVDISKQQQSSDWGAADLTAAQLD------YAASDVLYLHQLRDRLNGM 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
            + E    L     +    R
Sbjct: 168 LEREGRTALAQACFDFLPTR 187


>gi|268572043|ref|XP_002641219.1| C. briggsae CBR-POLQ-1 protein [Caenorhabditis briggsae]
 gi|187032127|emb|CAP28706.1| CBR-POLQ-1 protein [Caenorhabditis briggsae AF16]
          Length = 631

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 61/237 (25%), Gaps = 34/237 (14%)

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-- 169
               LN           ++ I    +             +    +  FG   K  VE   
Sbjct: 409 VAAHLNH--------LIESEIEDNGEMFPMLLDRIPPLLDPEIQYSTFGRIHKSMVEVFE 460

Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            + +F  L              D E D       +   G   D     +      +  + 
Sbjct: 461 MQRIFNELKKSAIKRFTSEKSFDLEMDTCQAVLKMFYSGISFDRVACKQFIGDTRKRIEI 520

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNIT 271
           L+E I +L  G   +   +      LF   G+   + S          T K IL+     
Sbjct: 521 LEEQIWRLAHGKF-NINSSNEASNVLFHRLGLVYPETSSCKIKQRHLPTNKQILNQMIGQ 579

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328
               + IL       +       L    + + R+    +    + TGR        Q
Sbjct: 580 HQIVEKILTYRHIQHTLTQC---LLPLANYEKRIH--CRMEMCTATGRMLTSSPNLQ 631


>gi|288924467|ref|ZP_06418439.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
 gi|288344186|gb|EFC78743.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
          Length = 457

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 66/238 (27%), Gaps = 49/238 (20%)

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
             +R+     A    +    GID+ D        + +          L+  R A   +  
Sbjct: 234 VDLRNPASVRAGLAAV----GIDVPDTRSW---RLTALRAAHPAVDALLRWRRAERVATT 286

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L E V +DGRLRG  +    +     +       NLP                  
Sbjct: 287 YGFRWLDEHVGADGRLRGEWRGSDGAAGRMTAAAG--LHNLPAD---------------- 328

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                         +R  ++A  G + V ADL  IE RVLA ++G+     A    +   
Sbjct: 329 --------------LRVVVVAEPGHQFVRADLGQIEPRVLAVVSGDRELAAATGQDDLYA 374

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467
                     P+       R   KV  LA  Y   +                    + 
Sbjct: 375 ----------PVAARLGVDRPTAKVAVLAAMYGQTSGTAGQALRQMRRSYPVALAYLD 422


>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 746

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 36/192 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +   E   L D          L +  
Sbjct: 233 EIAVDLE-----------HHDYRSYYGIVCLMQISTRKED-FLVDTLALRDELHILNEVF 280

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  + I  ++ LG+ +       T   +R  G P  SL          +
Sbjct: 281 ADPNILKVLHGAFMDIIWLQRDLGLYV--VSLFDTYHASRALGFPRHSLAYLLEKYANFK 338

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K +     +    K                        Y + D      ++ ++   
Sbjct: 339 TSKKYQLADWRVRPLSKP--------------------MHAYARADTHFLLNIYDQIRNQ 378

Query: 181 SDGERDLWLLDQ 192
              E  L  +  
Sbjct: 379 LIRENKLAEVLF 390


>gi|167821768|ref|ZP_02453448.1| 38L [Burkholderia pseudomallei 91]
          Length = 808

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/388 (11%), Positives = 93/388 (23%), Gaps = 76/388 (19%)

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
              +   +   V  DG +   +  + ++ T R+S      QN                  
Sbjct: 430 KTGQQKGMLTLVGDDGIIHQKIN-HTSTVTARFSEQDPNLQN------------------ 470

Query: 348 NRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
                     G     V+S  ++      ++V +D   +E  + A + G    I     G
Sbjct: 471 --------VSGAGKSQVKSVFVSRWLADGQVVQSDFTSLEIFIQAILTGCKQLIDDLRAG 522

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
            D++    ++      +                            +    G D  +    
Sbjct: 523 LDMHCVRVSQKEGITYED--------------------------AVLKCKG-DPSRGIAP 555

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525
           +          +  S            A    ++    + + KA   ++  +       T
Sbjct: 556 LPDWEKKRKGAKEFSFQRAYGAGAAGIAASTGMLLEDVQALIKAEEVRYPELSAYNAAKT 615

Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585
           E      +   +I            +       + V P ++   Y +       +     
Sbjct: 616 ERIKKSRRPTNNIQPHPEVKGLMCQL----GKGYSVTPDNKVYSYRESPAPAWLVRQGGM 671

Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGM-KNATKNGYD--------IVLTVHDEIVSET 636
                 T   ++    VQ    +     M                  +V  VHD +  + 
Sbjct: 672 PQSFSPT---EIANYEVQGTGGEWAKAAMWLAIRAFYARKNFGGLALLVNQVHDALYKDA 728

Query: 637 PDTPY-FSVGTLCSLMTKN---PSWAKG 660
             +    S   L + M        W  G
Sbjct: 729 HKSVLFESSALLHACMLAASDFMEWYFG 756



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 60/256 (23%), Gaps = 23/256 (8%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET     + +       E  V+    +      V                + L+D T + 
Sbjct: 2   ETTIKAYMKRKASPFLPENFVVVS-GWKRKGGEVMADYFGRGPRPFDWFTKLLKD-TTLL 59

Query: 69  VAHNSLFE-RILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           V  N  F+     ++   +D                +          ++     L+  E 
Sbjct: 60  VGANIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLL---RGMEPTSHMLSMDEM 116

Query: 122 ------LTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                   K++E KAL                     +      +         +  +  
Sbjct: 117 VVSYGGNVKIDEVKALWEAGVDTPDIDKDLLLRYLCGDESGLGDIGNTEKIFLGQLAKAR 176

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
               +          L    +   G  +D  L L+L   + +    +  ++         
Sbjct: 177 KSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAITAELRAYLPDDCP 236

Query: 234 ---SSRQTYALRMYLF 246
              +    Y L   +F
Sbjct: 237 FDFNWSNRYHLSPLIF 252


>gi|145252306|ref|XP_001397666.1| exosome complex exonuclease Rrp6 [Aspergillus niger CBS 513.88]
 gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
          Length = 782

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y  Q +++L   +  D+   +            L +  
Sbjct: 248 KEIAIDLE--------HHDVHSY--QGLVSLMQISTRDKDWVVDTLKPWREELQVLNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 298 TDPNILKVLHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 347


>gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
 gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
          Length = 211

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 28/206 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L ID E         +G+    +   + L     + +          ++   +L   L
Sbjct: 27  SYLAIDTE--------AMGLIHGRD--RLCLVQICNEFKRTSCIKIELNTSSSPNLKALL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D+ +  + H + F+    K    ++I +K   CT + +                     
Sbjct: 77  EDDKITKIFHYARFDVAALK--CNLEINTKNIFCTKIAS----------KLARTYTNKH- 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         ++    +   +Y   DV    E   +L  + 
Sbjct: 124 -----GLKDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMLKLKVIL 178

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
             E    L  +         DLD++ 
Sbjct: 179 KRENRYELAQKCFETVSVHADLDILK 204


>gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
 gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
          Length = 228

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 27/188 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQY 60
           + +D E          GV     +  +TL   +  D    L+D  +   +      L + 
Sbjct: 32  IGLDCE----------GVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKI 81

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--------GLPSSLKNA 112
           L   +++ V H+   +        G  +  K    TS+  RT               K  
Sbjct: 82  LEHNSILKVIHDCKSDTYGL--HHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKAL 139

Query: 113 CLALNFSEHLTKMEEGKALIA----RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           C  L         +  K ++        +   +   Y            ++ ++      
Sbjct: 140 CELLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTP 199

Query: 169 ATRELFKR 176
             R+LF  
Sbjct: 200 LWRDLFTW 207


>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
 gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
          Length = 399

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 52  VALDTE------FMRVSTYF----PKLGLIQL-YDGEHVSLIDPLAITDFSP--FVALLA 98

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 156

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 157 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 207

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 208 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLAL-SY 266

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 267 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPKSIER 325

Query: 299 VSSDGR 304
           +S D R
Sbjct: 326 ISEDPR 331


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 38/152 (25%)

Query: 2   SKLFIDIETRSPQP-----LPKVG------VWAYAEQAVITLCAYAWDDE---------- 40
            ++  D ET    P     + ++G      +    +   I       + E          
Sbjct: 4   REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRIL-----INPERDIPAEVTAV 58

Query: 41  PVKLWDRTEQSA----MPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
               W+  +       +    L ++ D     VAHN++F+        ++     IP  R
Sbjct: 59  TGHTWEMLKDEPKFAEIVDQFLDFIEDS--TLVAHNAMFDMGFINMELERCGKPIIPKAR 116

Query: 93  WICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
           +I T+ +AR    G P+SL   C   + S   
Sbjct: 117 FIDTAAIAREKFPGAPASLDALCKRFDVSLDS 148


>gi|213609178|ref|ZP_03369004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 52

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++ VHDE+V E       +V   +  LM         +PL  E    + +
Sbjct: 1   MMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 48


>gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601]
 gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601]
          Length = 204

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 50/201 (24%), Gaps = 23/201 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L + LRD
Sbjct: 20  VAIDCET--------MGLEPHRD--RLCVVQLSGGDGNAHLVQVAKGQTEAPNLCRLLRD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           E V+ + H   F+        G         CT + +R          LK     L   +
Sbjct: 70  ECVLKLFHYGRFDIAAMYNAFGALAAP--VYCTKIASRMVRTYTDRHGLKTLTQELLSVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                        +      ++               L       D    RE    L   
Sbjct: 128 IS--------KQQQSSDWGAETLTEAQRDYAASDVLHLHKLREALDGMLAREGRSALAQS 179

Query: 181 SDGERDLWLLDQTINDRGYRI 201
                    L       G  I
Sbjct: 180 CFDFLPTRALLDLEGWPGTDI 200


>gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 215

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 41/208 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQY 60
           + +D ET        +G+  + +   + L   +  D    L         +  P +L++ 
Sbjct: 27  VAVDTET--------MGLNPHRD--RLCLVQLSAGDGQAHLVQVPPHATAAGFP-NLVRV 75

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALN 117
           L D  V  + H + F+  + + T  + +     ICT V ++          L N C  L 
Sbjct: 76  LTDARVPKIMHFARFDVAILQHTFNVTVAPC--ICTKVASKLVRTYTDRHGLANLCREL- 132

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     G  L  +       +      +            Y   DV     L++RL
Sbjct: 133 ---------LGVELSKQQQSSDWGATDLTREQLC----------YAASDVLYLHALWERL 173

Query: 178 IPLSDGE--RDLWLLDQTINDRGYRIDL 203
             L   E  RD+            R+D+
Sbjct: 174 EALLHREGRRDVAQACFDFMPARARLDI 201


>gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 776

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 34/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y       L   +  +    + D  E  +    L    
Sbjct: 138 KEIAVDLE--------HHSYRSYL--GFTCLMQISTAEHD-YVVDTLELRSELQMLNDAF 186

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  +    ++ LG+ +       T   +R+ G P  SL +         
Sbjct: 187 TDPKIVKVFHGANMDFDWLQRDLGLYV--VNMFDTHQASRSLGFPHHSLASL-------- 236

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L       +     Y           +    Y + D      ++  +   
Sbjct: 237 ----------LSRYCQVEADKQ--YQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNE 284

Query: 181 S 181
            
Sbjct: 285 L 285


>gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
 gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
          Length = 204

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 42/221 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D ET        +G+  +    +      +  D    +   +       +L + + 
Sbjct: 19  EVAVDSET--------MGL-RFRRDPLCV-VQLSSGDGDAHVVRLSRPDYDCPNLKRLMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D  V+ + H   F+  + +  LG++  +    CT + ++          LK+        
Sbjct: 69  DRDVLKIFHFGRFDIAMVELHLGVE--TGPVYCTKIASKLARTYTDRHGLKDVARE---- 122

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                             G   S     +     +  Q   +Y   DV     + +RL  
Sbjct: 123 ----------------MAGIDLSKAQQSSDWGAAELSQAQLDYAASDVLHLHVIMRRLNE 166

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +   E         +       D   V    +L   +   +
Sbjct: 167 MLVREGR-------MELAQACFDFLPVRARLDLRGWDEMDI 200


>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
 gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
          Length = 382

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 37/194 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S     +           + L     +     L D    S + S L  +  D
Sbjct: 31  VAVDLEADSLHHFTE----------KVCLIQIGVN-GDAFLIDPLALSDL-SSLKPFFAD 78

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNAC-LALNFSEH 121
             V+ V H + ++     +  GI I       + + +R  G   + L +        +  
Sbjct: 79  PGVIKVLHGADYDVRSLYRDFGITI--TGLFDSEIASRFLGVQSTGLNDVVNRRFGVTMD 136

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                                              +    Y   DV    +L+ +L    
Sbjct: 137 K---------------------GCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNEL 175

Query: 182 DGERDLWLLDQTIN 195
                   + +   
Sbjct: 176 QQMGRAEWVAEECE 189


>gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 234

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 27/188 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQY 60
           + +D E          GV     +  +TL   +  D    L+D  +   +      L + 
Sbjct: 38  IGLDCE----------GVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKI 87

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--------GLPSSLKNA 112
           L   +++ V H+   +        G  +  K    TS+  RT               K  
Sbjct: 88  LEHNSILKVIHDCKSDTYGL--HHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKAL 145

Query: 113 CLALNFSEHLTKMEEGKALIA----RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           C  L         +  K ++        +   +   Y            ++ ++      
Sbjct: 146 CELLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTP 205

Query: 169 ATRELFKR 176
             R+LF  
Sbjct: 206 LWRDLFTW 213


>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
 gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
          Length = 434

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y  Q +++L   +  D+   +            L +  
Sbjct: 240 KEIAIDLE--------HHDVHSY--QGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVF 289

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D +++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 290 ADPSILKVFHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 339


>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
 gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
          Length = 381

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 79/288 (27%), Gaps = 42/288 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E      L +   +     A + L   A DDE   +            L   LR+
Sbjct: 22  LAIDTE-----FLREKTYY-----AKLCLIQLATDDETAIVDPFAVDD--LKVLAPVLRN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E VM + H    +  +  + +G  +       T V A   G    +  A           
Sbjct: 70  ENVMKLFHAGNQDLEILLREVG--VLPHPLFDTQVAAALLGHTQQIGYAA---------- 117

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                  L+   C  ++         +    +     EY   DV     +++R+      
Sbjct: 118 -------LVHAECGVTLKKIDSFTDWSRRPLSDSQL-EYAADDVVYLPRMYERMRAQLVE 169

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
              L  LD+   D     D       +    +  K++ +   +        S        
Sbjct: 170 LGRLSWLDRDFED---LADPARYAANERERYKRLKRVSQLSRRQL------SAAREVAAW 220

Query: 244 YLFLITGIDLVDMSEGTLKS-ILSHSNITQLAKDLILNRLASSGSAIL 290
                   D+      T +  + +     +   DL + R  S   +  
Sbjct: 221 RELEAQRRDVPRKWVVTDEQIVEACKREPRSIDDLFMVRGLSDRLSTK 268


>gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312]
 gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312]
          Length = 211

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 28/206 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L ID E         +G+    +   + L     +             +   +L   L
Sbjct: 27  SYLAIDTE--------AMGLIHGRD--RLCLVQICNELRRTACIKIELNRSSAPNLKALL 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE +  + H + F+    K  LGI+       CT + +                     
Sbjct: 77  EDEKITKIFHYARFDVAALKCNLGINTK--NIFCTKIAS----------KLARTYTNKH- 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         +     +   +Y   DV    E   +L  + 
Sbjct: 124 -----GLKDLINELLGVELDKSSQSSDWGSKEDLTKDQLDYASNDVRYLIEAMHKLKVIL 178

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207
           D E    L  +         DLD++ 
Sbjct: 179 DRENRYELAQKCFKTVSVHADLDILK 204


>gi|330721714|gb|EGG99712.1| DNA polymerase I [gamma proteobacterium IMCC2047]
          Length = 51

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           + VHDE+V E  D+    V   L   M++       +PL  E    + +
Sbjct: 1   MQVHDELVLEVADSDVELVSQGLNQYMSETVK--LDVPLLVEVGVGENW 47


>gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis]
 gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis]
          Length = 547

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 56/196 (28%), Gaps = 37/196 (18%)

Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546
            +                 V+  W A +  V    K         V              
Sbjct: 381 QEAAAKNYNIHWTLEEASDVRSKWLAAYVEVDLWHKWTELNPKEEVY----------IPD 430

Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
           P    +  K+ V+       RL+Y    G  + L+                     Q+  
Sbjct: 431 PDRGGKFGKKQVYAAYTLGERLIY--AFGLNAALSYED------------------QSTG 470

Query: 607 RDILCEGMKNATKN-GYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAK--- 659
            DIL   M+   ++ G    IV  VHDE++ E PD         +  +MT   +      
Sbjct: 471 ADILGLVMQEFRQHPGVFKCIVNQVHDEVLFEIPDDKVDEYNAVISRVMTDAAAHYLSPY 530

Query: 660 GLPLKAEGYEAKRYRK 675
           G+    E   A+ + K
Sbjct: 531 GVKADCEPETAEFWPK 546


>gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
 gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
          Length = 203

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 57/209 (27%), Gaps = 36/209 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET    P+             + L   +  D    +    +      +L + L D
Sbjct: 20  VAIDCETMGLNPIRD----------RLCLIQMSNGDGNAHMVQVEKGQTEAPNLCRMLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V+ + H   F+        G+        CT + ++        +           L 
Sbjct: 70  PNVLKLFHFGRFDIAAMHNAFGVLTEP--VYCTKIASKMV------RTYTDRHGLRNLLQ 121

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           ++   K  I++F + S                 +   +Y   DV     L  RL  L   
Sbjct: 122 ELL--KVDISKFQQMSDWG---------AETLTKAQLDYAASDVLHLHRLRDRLNELLVR 170

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
           E         +       D      L +L
Sbjct: 171 EGR-------MELAQSCFDFLPSRALLDL 192


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 38/150 (25%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYA----EQA----------------------VITLCAY 35
            ++ +D ET    PL    +   A    E                         +   + 
Sbjct: 3   REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHGLST 62

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSK 91
           A+         + E   +    L ++ D     VAHN+ F+R      LG+    ++P  
Sbjct: 63  AFLRGK----PKFEAPEIVEAFLDFVADA--PIVAHNAAFDRAFVNYELGLCSRAELPDH 116

Query: 92  RWICTSVLA--RTNGLPSSLKNACLALNFS 119
           RWI T  LA  R  G+ +SL   C     S
Sbjct: 117 RWIDTLALAKQRFPGMHNSLDALCKRFKIS 146


>gi|47934816|gb|AAT39846.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 126

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 26/127 (20%)

Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                  I   L     A  ++++       DGR+ G +   GA  TGR +        +
Sbjct: 24  DIPEAKTIYEYLMLQKRA-AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQV 80

Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
           P                                 RS      G KL+  D +G+E R+LA
Sbjct: 81  P-----------------------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLA 117

Query: 391 WIAGEDW 397
               ++ 
Sbjct: 118 HYMRDER 124


>gi|327198477|ref|YP_004327065.1| DNA polymerase [Erwinia phage phiEa104]
 gi|311875173|emb|CBX44433.1| DNA polymerase [Erwinia phage phiEa104]
          Length = 896

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/479 (11%), Positives = 122/479 (25%), Gaps = 62/479 (12%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           ++   L+         ++ +     ++  +           ++E + ++I          
Sbjct: 456 KDEFGLEVIEHDGIKYLMYNYTLRRSMPEWDSARL-RTSPKLTESSYETINGSLGQNIAK 514

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            + + +R  +  +           V +DGR+       GA+  G  +G + Q        
Sbjct: 515 YNTLQHRRRTLENPKHDEKGWLNMVRADGRMS-----AGATVFGTSTGRMSQ-------- 561

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                   +    +R       G  ++  D+   +  +L    G
Sbjct: 562 -------------WGIVNTPSSAAVYGAQMREVWTCEEGTSVISVDMNSAQLVLLCNFMG 608

Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-------RAIGKVMELALGYQGGAK- 446
           +     A   G++       +      +K+ K                +L + Y G    
Sbjct: 609 DPDFTYAVTKGKEDVEFKRTEDGRYYCEKLDKYLDPTIDKYLKYDDENDLYVVYTGTDAH 668

Query: 447 --VFKTMASHCGLDLQQFSQNVKSTSTF-----EDWEQAESHHLWMQDQYPEFAVKDKL- 498
                    +   D+                      +   + L       +FA   K+ 
Sbjct: 669 SFNSIQFTLNEESDIITARATQDEDLIHKISNGRKKAKNGIYCLLFGGGDEKFAKTIKVK 728

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  +K+ +  +   +  L   L + F    +  G +  +         +      +
Sbjct: 729 TTDEGARIKQTYFTRLPKIKALLDRLADEFTATKKALGQVFGKSHPICKGGFISVAGAYL 788

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
               P    L Y  +  +    N A +   R+    G +  N                  
Sbjct: 789 WCNSPHK-ILNYLLMGSESQVQNEALNWACRQMLEKGLMKLNG--------------RKP 833

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM----TKNPSWAKGLPLKAEGYEAKRY 673
             G  ++ + HDE   E P+        +   M    +K         +   G   K +
Sbjct: 834 AIGARLLCSYHDENSWEVPNELIHEAKEVIDQMYGTASKTLGLLPDTLVTGTGKVGKSW 892


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 42/151 (27%)

Query: 1   MSKLFIDIETRSPQP---------------------------LPKVGVWAYAEQAVITLC 33
           +S +  D ET    P                           L   G    A  A I   
Sbjct: 504 LSYVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGI 563

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPS 90
                     + +     A+      ++ D   + VAHN+ F+    +   +  G+    
Sbjct: 564 T------DAMVAEAPRAEAVLPPFRAFVGDA--VLVAHNAAFDLKFLRLKQRAAGVRFDG 615

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNF 118
              + T +L+R         SL      L  
Sbjct: 616 -PVLDTMILSRQIQGDHGEHSLDGLAARLGI 645


>gi|195472713|ref|XP_002088644.1| GE11427 [Drosophila yakuba]
 gi|194174745|gb|EDW88356.1| GE11427 [Drosophila yakuba]
          Length = 1145

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 71/274 (25%), Gaps = 31/274 (11%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSS 108
           P +L+        + V HN  ++R   K+   I+    R++ T  L            + 
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 109 LKN----ACLALNFSEHL--TKMEEGKALI--ARFCKGSIDSPPYDCTRANHVQAWQLFG 160
           LK+    A   L + E      + E   L            +   + T     Q++Q   
Sbjct: 301 LKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSLT 360

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VL 207
            YC  DVEAT  + + L PL             + + G     ++ +             
Sbjct: 361 NYCASDVEATHRILRVLYPLYADRFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYE 420

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L         +  E+   L                +      +      +      L  
Sbjct: 421 DLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP-----LPT 475

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                        RL +    +     L  A   
Sbjct: 476 VEHKNAGNTPEERRLQAKFQHLYDQQALLPARRP 509



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 96/337 (28%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 759  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 876

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 877  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 921

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             ++    + +           E     +Q   +++    R             R   I  
Sbjct: 922  ELEDRAYSSY-----------EASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIAT 970

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +    A     +E+ +       +VQ+ + D   ++   M+    
Sbjct: 971  GSEPRTPFLGGRLSRALE--ADGGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMG 1028

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1029 SHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065


>gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
 gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
          Length = 205

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+    +   + +   +       L   +  SA  + +L   L 
Sbjct: 20  VAVDTET--------MGLITPRD--RLCVVQISDGRGDEHLVRFSPGSAFAAPNLKAVLA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H + F+    +  LG+        CT + ++          LK+    L   
Sbjct: 70  DPERLKLYHFARFDLAAIEHYLGVVAAP--VFCTKIASKLVRTYTDRHGLKDLVRELLGK 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           E                K    S     T  +         EY   DV     +   L+ 
Sbjct: 128 EIS--------------KQQQSSDWGAPTLTDAQ------QEYAASDVRHLHAMHTILVE 167

Query: 180 LSDGERDLWLLDQTINDRGYR 200
             + E    +     +    R
Sbjct: 168 RLEREGRTAMAQACFDFLPMR 188


>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
 gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
          Length = 401

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 92/306 (30%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 52  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLA 98

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 156

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G  L     +   D              W L   Y   + E  +  +++ + 
Sbjct: 157 IDK-----GATLTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 207

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 208 DDCELILAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLAL-SY 266

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 267 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRVSSNDYPKPIER 325

Query: 299 VSSDGR 304
           +S D R
Sbjct: 326 ISEDPR 331


>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
 gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
 gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
          Length = 399

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 52  VALDTE------FMRVSTYF----PKLGLIQL-YDGEHVSLIDPLAITDFSP--FVALLA 98

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 156

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 157 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 207

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 208 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLAL-SY 266

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K+++     +   +        E 
Sbjct: 267 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKEILQLLSQARRISSNDYPKSIER 325

Query: 299 VSSDGR 304
           +S D R
Sbjct: 326 ISEDPR 331


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 40/156 (25%)

Query: 1   MSKLFIDIETRSPQP--------------------------LPKVGVWAYAEQAVITLCA 34
           M ++  D ET                               +   G         +   +
Sbjct: 1   MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
                    L D+     +  + + +  D     +AHN+ F+        ++     I  
Sbjct: 61  ------DEFLLDKPLFEEIADEFVAFFSDA--KLIAHNANFDIGFLNAELQRLRHPPIEP 112

Query: 91  KRWICTSVLARTNGL--PSSLKNACLALNFSEHLTK 124
              I T  +AR      P+SL   C          +
Sbjct: 113 SLVIDTLAMARRKFPMAPASLDALCSRFAVDTSKRE 148


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 44/153 (28%), Gaps = 30/153 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAW------DDEPVKLWDRTEQ 50
           M ++  D ET    PL    V            +T   +        D            
Sbjct: 1   MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPERDMPEAAYRVHKLS 60

Query: 51  SAMPSDLLQYLRDETV-----------MCVAHNSLFERILFKKTLG-IDIP-----SKRW 93
           S   +D     +D  +           + VAHN+ F+    +  L  I +P         
Sbjct: 61  SQFLAD-KPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPGDI 119

Query: 94  ICTSVLA--RTNGLPSSLKNACLALNFSEHLTK 124
           + T  +A  R  G PSSL   C          +
Sbjct: 120 VDTLQIARKRFPGSPSSLDALCQRFGIDLTERE 152


>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
 gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
          Length = 399

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 32/310 (10%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLL 58
           M   + +D E        +V  +       + L    +D E V L D        P   +
Sbjct: 48  MKSAVALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLVDPLAITDFSP--FV 94

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115
             L +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       
Sbjct: 95  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 152

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN          G        +   D              W L   Y   + E  +  ++
Sbjct: 153 LNVEIDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWE 203

Query: 176 R-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + +    +         Q  +     +D+    KL  L     + L +    +      +
Sbjct: 204 QAVRDDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLA 263

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                    +L+     +    +   L+  L+ + +    K ++     +   +      
Sbjct: 264 L-SYIVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPK 321

Query: 295 LSEAVSSDGR 304
             E +S D R
Sbjct: 322 SIERISEDPR 331


>gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217]
 gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217]
          Length = 203

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L + L D
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQVAKGQTSAPNLERLLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
             V+ + H   F+        G         CT + ++          LK     L
Sbjct: 70  PNVLKLFHFGRFDIAAMHNAFGALAAP--VYCTKIASKLIRTYTDRHGLKYLLQEL 123


>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
          Length = 380

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 25/309 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FIALLA 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ + H+   + ++F +    D      I T ++AR  GL +S       L      
Sbjct: 80  NPKVLKILHSCSEDLLVFLQEF--DQLPHPMIDTQIMARFIGLGAS-AGLAK-LAQQYLN 135

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLS 181
            ++++G        +   D              W L   Y   + E  +  +++ +    
Sbjct: 136 IEIDKGATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVRDDC 191

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           +         Q  +     +D+    KL  L     + L +    +      +       
Sbjct: 192 ELALSKTHKLQERDSEKAYLDIPNAWKLNSLELSRLRILSQWRQNVAIERDLAL-SYIVK 250

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
             +L+     +    +   L+  L+ + +    K ++     +   +        E +S 
Sbjct: 251 SEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPEPIERISE 309

Query: 302 DGRLRGTLQ 310
           D R + T+Q
Sbjct: 310 DPRYKKTIQ 318


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 34/151 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET   +P          E   + L                       A+   
Sbjct: 1   MREIVLDTETTGFEPSEG---DRIVEIGAVELFNHLPTGRTYHQYINPERNMPEAAFNVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
                 L D+     +  + + ++ D     V HN+ F+       LG      +P+ + 
Sbjct: 58  GLSEEFLSDKPIFKNIAQEFIDFIADS--KLVIHNASFDMKFLNAELGWVNRPALPNDQT 115

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
           I T  +AR    G P+SL   C         
Sbjct: 116 IDTLAIARRKFPGSPASLDALCRRFGIDNSS 146


>gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 45/186 (24%), Gaps = 36/186 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYL 61
            + +D ET                   + +   +       L      S   + +L   L
Sbjct: 19  IVAVDTETMGLVTTRD----------RLCVVQISDGKGDEHLVRFAPGSTYDAPNLKAVL 68

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D   + + H + F+       LG  + +    CT + ++          LK     L  
Sbjct: 69  ADPERLKLFHFARFDLAAIHYYLG--VMATPVFCTKIASKLVRTYTDRHGLKELVRELAG 126

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            E                K    S       ++         EY   DV         L+
Sbjct: 127 KEIS--------------KQQQSSDWGGANLSDAQL------EYAASDVRYLHTCHAVLV 166

Query: 179 PLSDGE 184
                E
Sbjct: 167 DRLARE 172


>gi|221127142|ref|XP_002166917.1| PREDICTED: similar to DNA polymerase gamma [Hydra magnipapillata]
          Length = 592

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/355 (10%), Positives = 83/355 (23%), Gaps = 40/355 (11%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
           +GR R   Q           G       +           +                   
Sbjct: 180 NGRKRIMSQKTV----WFDDGRGVILPQVVTAGTVTRRSVEATWLTASNPMFNRIGSELK 235

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE--DWKIKAFA-NGEDIYVTTYAKAFN 418
             +R+      G  LV AD+   E  + + +          + A +   +      +   
Sbjct: 236 SLIRT----PPGYVLVGADVDSQELWIASILGDAMFSNMHGSTALSWMTLQGKKSDRTDL 291

Query: 419 TPIDKVSKEQRA-IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                 +        KV      Y  G K    +      ++       K+   +   + 
Sbjct: 292 HSKTADTIGMSRDQAKVFNYGRIYGAGEKFAVRLLMQFNHNISLAQAEEKAAKLYATTKG 351

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537
            +S+ L           ++ L  +    +        QG +            ++    +
Sbjct: 352 IKSYLLT----------EEGLRLSESYGI-----PTSQGTISYIN-----LKELLYLTKT 391

Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597
               +   V +      + D+   L S               +  A      +  Y    
Sbjct: 392 SWENKELLVHKTWFGGSESDMFNKLESIAVSEEPRTPVLNCMITKALLPKYVQNHYMTSR 451

Query: 598 TENIVQAISRD-------ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
              +VQ+ + D        +   +           +++HDE+     +   +   
Sbjct: 452 VNWVVQSSAVDYLHLVLTCMK-WLIEKYDIDARFCISIHDEVRYIVHEKDKYRAA 505


>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
 gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
          Length = 239

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 37/150 (24%), Gaps = 32/150 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++  D ET    P    G     E   + L  +              Q  MP      
Sbjct: 1   MREISFDTETTGLNP---RGGDRLVEIGGVELINH-VPTGNAYHVYINPQRDMPEGAFKV 56

Query: 58  ----------LQYLR---DETVMCVA------HNSLFERIL----FKKTLGIDIPSKRWI 94
                             DE +  V       HN+ F+        ++     I + + I
Sbjct: 57  HGLSEEFLSDKPLFEQVADEFLEFVGDGTLVIHNAAFDMGFINMELERCGRRTISNTQVI 116

Query: 95  CTSVLARTNGLPS--SLKNACLALNFSEHL 122
            T  +AR        SL   C         
Sbjct: 117 DTLEIARRKHPSGPNSLDALCSRYGIDNSK 146


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET   +P          E   I L                       A+A  
Sbjct: 1   MREIVLDTETTGFKPEEG---HRLVEIGCIELVNHLATGERFHVYLNPERDMPPEAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRW 93
                 L D+   + + +D + ++ D     V HN+ F+       L I     +P  R 
Sbjct: 58  GLSEEFLADKPLFNDVAADFVAFIGDS--PLVIHNAAFDMHFLNWELKIAGYPVMPKDRA 115

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           I T ++AR    G P++L   C      
Sbjct: 116 IDTLLMARQKFPGSPATLDALCKRFGVD 143


>gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31]
 gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31]
          Length = 205

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+       +      +  D    +      +    +L + L D
Sbjct: 21  IAIDSET--------MGL-RLGRDPLCV-VQLSSGDGDAHVVRLDRATYDAPNLKRLLTD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
            +V+ + H   F+  +F   LG  + +    CT + ++          LK+    L
Sbjct: 71  PSVVKLFHFGRFDIAMFLLHLG--VMTAPVYCTKIASKLARTYTDRHGLKDVTREL 124


>gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805]
 gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805]
          Length = 214

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E         +G+    +   + L     D + V              L   +  
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQICDDKDQVACIRIALGQTEAPRLKALMEA 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLAL 116
            T+  V H + F+        G+ I      CT V   LART      LK+  + L
Sbjct: 82  TTIEKVFHFARFDVAALA--TGLGIRVNPLFCTKVGSRLARTYTPRHGLKDLVMEL 135


>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 18/198 (9%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y    +++L   +  ++   +            L +  
Sbjct: 250 REIAIDLE--------HHDVHSY--HGLVSLMQISTREKDWVVDTLKPWREELQMLNEVF 299

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++ + H S  + I  ++ LG+ +       T   A     P   K+    L     
Sbjct: 300 ADPNILKLFHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPK--KSL-KYLLHKFV 354

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             + ++   +     +              H   +       +    +T E    L+   
Sbjct: 355 NFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNELLTNSTPE--DNLVDYV 412

Query: 182 DGERDLWLLDQTINDRGY 199
             E+      Q      Y
Sbjct: 413 -LEKSKTEALQRYERPVY 429


>gi|60219516|emb|CAI56770.1| hypothetical protein [Homo sapiens]
          Length = 2149

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/383 (11%), Positives = 93/383 (24%), Gaps = 71/383 (18%)

Query: 13   PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63
              P+   G      +  ++   A  W       +   ++          +P  L   L  
Sbjct: 1711 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1770

Query: 64   ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            +  M    +             +++      +   + GI +  + +    V        S
Sbjct: 1771 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1829

Query: 108  ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               +L +     L      L  ME  + + +       +           +  +    + 
Sbjct: 1830 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1889

Query: 163  CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
                 +   +   R       E         +   G           + ++  +   ++ 
Sbjct: 1890 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1944

Query: 223  DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256
               +L  G   S   +  +   LFL   +                               
Sbjct: 1945 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2003

Query: 257  -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310
                T K +L+          LIL     + +    +  L      +      R+    Q
Sbjct: 2004 RQLSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2063

Query: 311  FYGASRTGRWSGCVFQPQNLPRQ 333
             + A  TGR +      QN+PR 
Sbjct: 2064 SHTA--TGRITFTEPNIQNVPRD 2084


>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
 gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
          Length = 235

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 32/148 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS----- 55
           M ++ +D ET    P  K G     E   + L   +             +  MP      
Sbjct: 1   MREIVLDTETTGLDP--KQG-HRIVEIGAVELLN-SIPTGQSFHVYIHPERDMPDEAFRV 56

Query: 56  ---------------DLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
                          +++  L D       +AHN+ F+         +     +  +R +
Sbjct: 57  HGISLEFLTGKPLFAEIVPALIDFLGEAKIIAHNAEFDFRFLNAEFLRAEAEPLAWERVV 116

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFSE 120
            T  LA  R  G  +SL   C       
Sbjct: 117 DTLALARRRFPGASNSLDALCARFGVDT 144


>gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
 gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
          Length = 203

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 25/173 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D    L   ++  A   +L   L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCLIQMSGGDGDCHLVQVSKGQAGAPNLCAMLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA-LNFS 119
             V+ + H   F+        G+        CT + ++          LK      L   
Sbjct: 70  PAVLKLFHFGRFDIAALLNAFGVVTAP--VYCTKIASKLVRTYTDRHGLKVLLQDMLGID 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                         +                       L       DV   RE
Sbjct: 128 ISKH---------QQQSDWGAPKLTPAQLDYAASDVLYLHQLKAAFDVLLQRE 171


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 30/144 (20%)

Query: 3   KLFIDIETRSPQP-----LPKVGVWAYAEQAVIT-LCAYAWDDEPVKLW----------- 45
            +  D ET   QP     + ++G         I    ++     P ++            
Sbjct: 484 FIVFDTETTGLQPSQGDQIVQIGAVRIV-NGRILSGESFNRIVNPGRVIPPESIKFHGIT 542

Query: 46  -DRTEQSAMPSDLLQ---YLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
            D  +       +L        + V+ VAHN+ F+    +   +  G+       + T +
Sbjct: 543 DDMVKDKPPLGVVLPQFKAFAADAVL-VAHNAAFDLKFLRMNERQFGLKFD-NPVLDTMM 600

Query: 99  LARTNGLP---SSLKNACLALNFS 119
           L+     P    SL   C  L  S
Sbjct: 601 LSNYLDGPETGHSLDAICDRLGIS 624


>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 786

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E         +G+        + L   +  D+   +            L +  
Sbjct: 225 KEIAIDLE--HHDNRTYIGM--------VCLMQISTRDKDWIVDTLKPWRRKLECLNEVF 274

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D +++ V H +  + +  ++ LG+ I       T   AR  G  +   +    L     
Sbjct: 275 ADPSILKVLHGAFMDIVWLQRDLGLYI--VGLFDTFHAARALGYQA--ASLAYLLEL-HV 329

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
             K ++   L     +       ++  RA+      +F
Sbjct: 330 NFKAQKQYQLADWRQRPLSKE-LFEYARADTHFLLYIF 366


>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
 gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
          Length = 399

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 32/310 (10%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLL 58
           M   + +D E        +V  +       + L    +D E V L D        P   +
Sbjct: 48  MKSAVALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FV 94

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115
             L +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       
Sbjct: 95  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 152

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN          G        +   D              W L   Y   + E  +  ++
Sbjct: 153 LNIEIDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWE 203

Query: 176 R-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + +    +         Q  +     +D+    KL  L     + L +    +      +
Sbjct: 204 QAVRDDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLGQWRQNVAIERDLA 263

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                    +L+     +    +   L+  L+ + +    K ++     +   +      
Sbjct: 264 L-SYIVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPK 321

Query: 295 LSEAVSSDGR 304
             E +S D R
Sbjct: 322 SIERISEDPR 331


>gi|158315552|ref|YP_001508060.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158110957|gb|ABW13154.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 673

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309
           GID+ D   G    + +   +  + + L+  R A   +       L   V +DGRLRG  
Sbjct: 353 GIDVPDTRSG---RLSALRGVHPVVEALLAWRKAERIATTYGYRWLDTHVGADGRLRGEW 409

Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369
           +    +     +       NLP                                +R  +I
Sbjct: 410 RGSDGAAGRMTAAAG--LHNLPAD------------------------------LRVVVI 437

Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429
           A  G + V ADL  IE RVLA ++G+    +A    +             P+       R
Sbjct: 438 AEPGYRFVRADLGQIEPRVLAVVSGDPELTRATRQDDLYA----------PVAASLGVDR 487

Query: 430 AIGKVMELALGYQGGAK 446
              KV  LA  Y     
Sbjct: 488 PTAKVAVLAAMYGQTTG 504



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYD----IVLTVHDEIVSET 636
           T+G      +VQ  + ++         +        IVL +HDE++   
Sbjct: 579 TWGRFARNAVVQGAAAELFKAWAVTVRQAIAPLGGAIVLCLHDELLLHV 627


>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
          Length = 733

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 52/193 (26%), Gaps = 36/193 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E              Y     I      +  +    L D  +       L + 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             + +++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLGLYV--VGLFDTYHASKAIGLPRHSLAYLLENFANF 338

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +   K +     I    K                        Y + D      ++ +L  
Sbjct: 339 KTSKKYQLADWRIRPLSKP--------------------MTAYARADTHFLLNIYDQLRN 378

Query: 180 LSDGERDLWLLDQ 192
                  L  +  
Sbjct: 379 KLIESNKLAGVLY 391


>gi|121705450|ref|XP_001270988.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
 gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
          Length = 778

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           + +Y    +++L   +  D+   +            L    
Sbjct: 250 KEIAIDLE--------HHDMHSY--HGLVSLMQISTRDKDWVVDTLKPWREDLQILNDVF 299

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 300 ADPAILKVLHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 349


>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
          Length = 733

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 64/256 (25%), Gaps = 52/256 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E              Y     I      +  +    L D  +       L + 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             + +++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLGLYV--VGLFDTYHASKAIGLPRHSLAYLLENFANF 338

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +   K +     I    K                        Y + D      ++ +L  
Sbjct: 339 KTSKKYQLADWRIRPLSKP--------------------MTAYARADTHFLLNIYDQLRN 378

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
                  L  +                      +A+ R +  +         + S  +  
Sbjct: 379 KLIESNKLAGVLYE----------------SRNVAKRRFEYSKYRPLTPSSEVYSPIEKE 422

Query: 240 ALRMYLFLITGIDLVD 255
           +    L     I    
Sbjct: 423 SPWKILMYQYNIPPER 438


>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
 gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
 gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
          Length = 733

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 64/256 (25%), Gaps = 52/256 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E              Y     I      +  +    L D  +       L + 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             + +++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLGLYV--VGLFDTYHASKAIGLPRHSLAYLLENFANF 338

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +   K +     I    K                        Y + D      ++ +L  
Sbjct: 339 KTSKKYQLADWRIRPLSKP--------------------MTAYARADTHFLLNIYDQLRN 378

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
                  L  +                      +A+ R +  +         + S  +  
Sbjct: 379 KLIESNKLAGVLYE----------------SRNVAKRRFEYSKYRPLTPSSEVYSPIEKE 422

Query: 240 ALRMYLFLITGIDLVD 255
           +    L     I    
Sbjct: 423 SPWKILMYQYNIPPER 438


>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
 gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
 gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
          Length = 733

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 64/256 (25%), Gaps = 52/256 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E              Y     I      +  +    L D  +       L + 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             + +++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLGLYV--VGLFDTYHASKAIGLPRHSLAYLLENFANF 338

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +   K +     I    K                        Y + D      ++ +L  
Sbjct: 339 KTSKKYQLADWRIRPLSKP--------------------MTAYARADTHFLLNIYDQLRN 378

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
                  L  +                      +A+ R +  +         + S  +  
Sbjct: 379 KLIESNKLAGVLYE----------------SRNVAKRRFEYSKYRPLTPSSEVYSPIEKE 422

Query: 240 ALRMYLFLITGIDLVD 255
           +    L     I    
Sbjct: 423 SPWKILMYQYNIPPER 438


>gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
 gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
          Length = 203

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 51/200 (25%), Gaps = 35/200 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    L    +      +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQMSGGDGNAYLVQIDKGQTEAPNLAALLEN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             ++ + H   F+        G         CT + ++          LKN    L    
Sbjct: 70  PDILKLFHFGRFDIAAMFNAFGALAAP--VYCTKIASKLVRTYTDRHGLKNLMQEL---- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L     K    S                   Y   DV    +L   L  +
Sbjct: 124 ----------LDKDISKQQQSSDWGAPKLTEAQLD------YAASDVLYLHQLRDELNRM 167

Query: 181 SDGERDLWLLDQTINDRGYR 200
              E  + +     +    R
Sbjct: 168 LAREGRVEMAQACFDFLPIR 187


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 99/341 (29%), Gaps = 36/341 (10%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL--------DEDIVKLTDGIIRSS 235
           E+D+    + + ++G   D ++V K    I     KL        + +     +      
Sbjct: 111 EQDVCDRYRKMFNKGAPFDAEVVCKAATAIEAMYLKLCEQASANGELERFFTVEVPAYRL 170

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSG------ 286
            Q            G+            +   +         +      L S        
Sbjct: 171 LQLSMSAGISIDTIGLSEKRSQAEHDYFLALKAYSAKHDMPLETPSRRALESKLVLEGFE 230

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345
              + +  L E V  D    G      A   T R  G +    N+ R      ++     
Sbjct: 231 LDEVSIEYLLEFVPHDRDFGGDTMALLALDVTRRVLGSLTLATNITRP-----VVDVFGS 285

Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405
             +R +  +  L       RS I A  G KL   D    E  ++A ++G++   + +A G
Sbjct: 286 RTSRVQLRSPSLQNIPKRYRSIISARTGAKLCYVDFDQFEVGIMAALSGDEELKRLYAAG 345

Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465
           +   +                  R   K + L+  Y    K     A   G++ Q+  + 
Sbjct: 346 DMYDLFANTHLGLVNN-------RKAAKQLFLSYAYGMSRKALIDAAYSLGVERQKAKEA 398

Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                 F  +++ E     +  ++        ++G     +
Sbjct: 399 ------FRLFQRYEDWKRSIWAEFQGTGRVATVLGNHYRRI 433



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 9/118 (7%)

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              K L +    +  E                 +R            R            
Sbjct: 376 MSRKALIDAAYSLGVERQKAKEAFRLFQRYEDWKRSIWAEFQGT--GRVATVLGNHYRRI 433

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-NGYDIVLTVHDEIVSE 635
                + +  R           +VQ  +  I    +      +   +VL +HD ++ E
Sbjct: 434 GKGQLSGKEQRSA------VSQVVQGTASLIFKRALLAVASIDDVKVVLPMHDALLFE 485


>gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
 gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
          Length = 228

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 40/154 (25%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGV-------------WAY--------AEQAVITLCA 34
           M ++ +D ET      S   + ++G                Y        AE   +    
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPERSMPAEAFEVHGL- 59

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGID-IPS 90
                    L D+ + + +  D L ++ D     V HN+ F+        K +G+  IP 
Sbjct: 60  -----GDEFLRDKPKFAQIGQDFLDFIGDS--KLVIHNAAFDIKFLNAELKWMGLPQIPW 112

Query: 91  KRWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
           ++ + T  +A  R  G P+SL   C         
Sbjct: 113 EQALDTLAIARKRFPGSPASLDALCRRFGIDNTS 146


>gi|119491955|ref|XP_001263472.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
 gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
          Length = 765

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y    +++L   +  D+   +            L +  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLKPWREELQILNEVF 294

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 295 ADPGILKVLHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 344


>gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 205

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 53/201 (26%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+    +   + +   +       L      S   + +L   L 
Sbjct: 20  IAVDTET--------MGLITPRD--RLCVVQISDGQGDEHLVRFNPGSDYAAPNLRAALA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H   F+    +  LG+        CT + +R          LK     L   
Sbjct: 70  DPARLKLYHFGRFDIAAIRHYLGVVAAP--VYCTKIASRLVRTYTDRHGLKELVREL--- 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L     K    S       ++         EY   DV     L   L  
Sbjct: 125 -----------LGQELSKVQQSSDWGGPVLSDAQ------KEYAASDVRYLHALKAELDK 167

Query: 180 LSDGERDLWLLDQTINDRGYR 200
               E  + L     +   +R
Sbjct: 168 RLAREGRMELAQACFDFLPHR 188


>gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
 gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
          Length = 206

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 23/177 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + +   +  D    +      +    +L   L D
Sbjct: 20  VAIDSET--------MGLRFGRDD--LCVVQLSAGDGDAHVVRLNRPAYDCPNLKALLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
           E V+ + H   F+  +F   LG+        CT + ++          LK+    L   +
Sbjct: 70  EKVLKLFHFGRFDIGMFLLHLGVVTAP--VYCTKIASKLARTYTDRHGLKDLVRELLSVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        +       +   +           L     K D    RE    L
Sbjct: 128 IS--------KAQQSSDWGAQTLTPEQLAYAASDVLHLHTLREKLDTMLAREGRTEL 176


>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
 gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
          Length = 382

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 91/306 (29%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FIALLA 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ V H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 189 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 248 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPKPIER 306

Query: 299 VSSDGR 304
           +S D R
Sbjct: 307 ISEDPR 312


>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
 gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
          Length = 380

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 32/310 (10%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLL 58
           M   + +D E        +V  +       + L    +D E V L D        P   +
Sbjct: 29  MKSAVALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FV 75

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115
             L +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       
Sbjct: 76  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 133

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN          G        +   D              W L   Y   + E  +  ++
Sbjct: 134 LNIEIDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWE 184

Query: 176 R-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + +    +         Q  +     +D+    KL  L     + L +    +      +
Sbjct: 185 QAVRDDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLGQWRQNVAIERDLA 244

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                    +L+     +    +   L+  L+ + +    K ++     +   +      
Sbjct: 245 L-SYIVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPK 302

Query: 295 LSEAVSSDGR 304
             E +S D R
Sbjct: 303 SIERISEDPR 312


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 76/266 (28%), Gaps = 44/266 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-----EPVKLWDRTEQSAMPSD 56
           S L++D E                +   ++L     D      E V + D   Q  +  +
Sbjct: 21  SILWLDTE----------VADYKTDTPQLSLIQVLADGNDLTAESVGILDVLYQPELADE 70

Query: 57  LL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            + + + +  +  V HN+ ++R    K       +K   CT                   
Sbjct: 71  FIAKVMYNPAIEKVFHNASYDRKFLGKH-----KAKNVTCTL-------------ELAKT 112

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           + +        + K L   F                         +Y  +DV     L +
Sbjct: 113 IPYYRLPVPNYQLKTLTEYFGICPQVDKTEQTGDWRKRPLSPRQLDYAAKDVVYVAHLHR 172

Query: 176 RL------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
            L       P ++    L L  + I  R  ++D ++  +++E +    +  +   V    
Sbjct: 173 HLLDLAQPDPATEDIEALTLRYRQIEHRWKQLDTEI-QQIKERLKAAMQAQNVKKVHGFR 231

Query: 230 GIIRSSRQTYALRMYLFL---ITGID 252
              ++          L       GI+
Sbjct: 232 LSSQNRTSKKVAFHQLAEVTKKLGIE 257


>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112]
 gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
 gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
 gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
          Length = 364

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  E       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLEDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
 gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
          Length = 796

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E         +G+        + L   +  D+   +            L +  
Sbjct: 235 KEIAIDLE--HHDNRTYIGM--------VCLMQISTRDKDWIVDTLKPWRRKLECLNEVF 284

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D +++ V H +  + I  ++ LG+ I       T   AR  G  +   +    L     
Sbjct: 285 ADPSILKVLHGAFMDIIWLQRDLGLYI--VGLFDTFHAARALGYQA--ASLAYLLEL-HV 339

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
             K ++   L     +       ++  RA+      +F
Sbjct: 340 NFKAQKQYQLADWRQRPLSKE-LFEYARADTHFLLYIF 376


>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           A1163]
          Length = 764

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y    +++L   +  D+   +            L +  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLKPWREELQILNEVF 294

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 295 ADPGILKVLHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 344


>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
 gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           Af293]
          Length = 764

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E           V +Y    +++L   +  D+   +            L +  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLKPWREELQILNEVF 294

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK  
Sbjct: 295 ADPGILKVLHGSSMDIIWLQRDLGLYV--VGMFDTYHAACALNYPKRSLKFL 344


>gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis]
          Length = 829

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 76/293 (25%), Gaps = 29/293 (9%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             +TL         + ++D      +     L + L  E V+ V H+   +        G
Sbjct: 425 GRLTLLQIGTMSGLIYIFDLITCPNILQAGGLQKLLESENVIKVIHDCKNDSANLFHQFG 484

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                     ++L   C       ++ K +  K +  R
Sbjct: 485 ITL--VNIFDTQAAHSVIEYQNTGKPVYKVKNANLNTLCDLYGAPSNVLKEQL-KNIYRR 541

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGE--YCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
             +     P             Q      Y         E+ K    L +       +  
Sbjct: 542 DQRYWARRPLTRDMIVYASSDVQSLVPLIYNAMSKLIKPEMQKLFNELCEE-----QILM 596

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGI 251
            IN    ++      K Q  I  E   L   + +     I  S +   L  YL L     
Sbjct: 597 HINPNEVKV-----RKKQRKIETEVADLRRKMDETIGKNIVLSNREIRLLRYLELTKEEK 651

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
           + +  S    K +    ++ Q   D          +   +  +L    S +  
Sbjct: 652 EKLKGSYKVAKKLEKLESMGQEKNDSSDEDDEDDKNDDTEYPSLDSYTSENSH 704


>gi|219681348|ref|YP_002456112.1| putative DNA polymerase [Erwinia phage phiEa21-4]
 gi|199580615|gb|ACH89002.1| putative DNA polymerase [Erwinia phage phiEa21-4]
          Length = 896

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 126/479 (26%), Gaps = 62/479 (12%)

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
           ++   L+         ++ +     ++  +           ++E + ++I          
Sbjct: 456 KDEFGLEVIEHDGIKYLMYNYTLRRSMPEWDSARL-RTSPKLTESSYETINGSLGQNIAK 514

Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334
            + + +R  +  +           V +DGR+       GA+  G  +G + Q        
Sbjct: 515 YNTLQHRRRTLENPKHDEKGWLNMVRADGRMS-----AGATVFGTSTGRMTQ-------- 561

Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394
                                   +    +R       G  ++  D+   +  +L    G
Sbjct: 562 -------------WGIVNTPSSAAVYGAQMREVWGCEEGTSVISVDMNSAQLVLLCNFMG 608

Query: 395 EDWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK- 446
           +     A   G++            Y    +  +D +  +     +  +L + Y G    
Sbjct: 609 DPDFTYAVTKGKEDVEFKRTEDGRYYCSKLDKYLDPMIDKYLNYDEENDLYVVYTGTDAH 668

Query: 447 --VFKTMASHCGLDLQQFSQNVKST-----STFEDWEQAESHHLWMQDQYPEFAVKDKL- 498
                    +   D+               S      +   + L       +FA   K+ 
Sbjct: 669 SFNSIQFTLNEESDIITARATQDEDLIHKISNGRKKAKNGIYCLLFGGGDEKFAKTIKVK 728

Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558
                  +K+ +  +   +  L   L + F    +  G +  +         +      +
Sbjct: 729 TTEEGARIKQTYFTRLPKIKALLDRLEDEFKATKKALGQVFGKTHPICKGGFITVAGAYL 788

Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618
               P    L Y  +  +    N A +   R+    G +  N                  
Sbjct: 789 WCNSPHK-ILNYLLMGSEAQVQNEAVNWACRQMLDKGLMKLNG--------------RKP 833

Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL----PLKAEGYEAKRY 673
             G  ++   HDE   E P+        +   M    S A GL     +   G   K +
Sbjct: 834 AIGARLLCAYHDENSWEVPNEMVHDAKAVIDEMYGTASKALGLLPETLVTGTGKVGKNW 892


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET          +    E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAV 56

Query: 49  EQ------------SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP---SKR 92
                         + +  ++L +  D     +AHN+ F+      +   I +P    +R
Sbjct: 57  HGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  +AR      P+SL   C      
Sbjct: 115 VVDTLSMARRKNPMGPNSLDALCRRYGVD 143


>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
 gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
          Length = 288

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 69/274 (25%), Gaps = 47/274 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             L +D E+ S           Y E   + L   +   +   + D      +  D+    
Sbjct: 29  RVLALDTESNS--------FHVYRE--RVCLLQLSTRAQD-FVVD-----PISVDVRPLG 72

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNF 118
            +  +    V H + ++     +  G  IP  R   T + AR  G P   L     A   
Sbjct: 73  EILCDGREVVLHGADYDVRCLHREYGWRIP--RLFDTMIAARRLGRPGLGLSALVEAH-- 128

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
                    G  L   F +      P    +            Y   D      LF  L 
Sbjct: 129 --------FGVRLSKAFQRSDWGRRPLTPDQ----------LAYAALDTHFLLPLFDLLT 170

Query: 178 -----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    +          ++  R    D +   +++     +                
Sbjct: 171 GELATRGALEEAWKESQRIASVVARERVFDPEGWRRIKGSRELDAPGKAVLRALWIARED 230

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           R+          L     +++      T +++ +
Sbjct: 231 RARASDRPPFKVLGEPAMLEIARRRPATREALAA 264


>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 288

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 69/274 (25%), Gaps = 47/274 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             L +D E+ S           Y E   + L   +   +   + D      +  D+    
Sbjct: 29  RVLALDTESNS--------FHVYRE--RVCLLQLSTRAQD-FVVD-----PISVDVRPLG 72

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNF 118
            +  +    V H + ++     +  G  IP  R   T + AR  G P   L     A   
Sbjct: 73  EILCDGREVVLHGADYDVRCLHREYGWRIP--RLFDTMIAARRLGRPGLGLSALVEAH-- 128

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177
                    G  L   F +      P    +            Y   D      LF  L 
Sbjct: 129 --------FGVRLSKAFQRSDWGRRPLTPDQ----------LAYASLDTHFLLPLFDLLT 170

Query: 178 -----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                    +          ++  R    D +   +++     +                
Sbjct: 171 GELATRGALEEAWKESQRIASVVARERVFDPEGWRRIKGSRELDAPGKAVLRALWIARED 230

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           R+          L     +++      T +++ +
Sbjct: 231 RARASDRPPFKVLGEPAMLEIARRRPATREALAA 264


>gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
 gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
          Length = 211

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 54/201 (26%), Gaps = 29/201 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+    +   + +   +  D    +    +      ++ + L D
Sbjct: 27  VAIDTET--------LGLRPRRD--RLCVVQLSPGDGTADVVQIEKGQTSAPNIEKLLVD 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             V  + H   F+  +     G  +    + CT + +R                      
Sbjct: 77  TNVQKIYHYGRFDIAVLYHAFG-ALSDNNF-CTKIASRL-----------------TRTY 117

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   +     G   S     +     +  +    Y   DV     L   L+     
Sbjct: 118 TDRHGLKNLTHELIGVDLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRDALLKRLAR 177

Query: 184 ERDLWLLDQTINDRGYRIDLD 204
           E    L D+       R  LD
Sbjct: 178 EDRQHLADECFKFLPTRCLLD 198


>gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D    +   +       +L + L D
Sbjct: 44  IAIDCET--------MGLNPHRD--RLCLVQISGGDGNAHMIQISPGQRSAPNLARMLED 93

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             ++ + H   F+        G         CT + ++          LK     L   +
Sbjct: 94  ANILKLFHYGRFDIAAMYHAFGALAQP--VYCTKIASKMVRTYTERHGLKFLLQDLIGVD 151

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +       S               L       D    RE
Sbjct: 152 IS--------KHQQQSDWGAASLTPAQLDYAASDVLYLHRLRAHLDALLARE 195


>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
          Length = 380

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGEHVSLIDPLAITDFSP--FIALLA 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ V H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   +              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSNIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 189 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 248 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRVSSNDYPKPIER 306

Query: 299 VSSDGR 304
           +S D R
Sbjct: 307 ISEDPR 312


>gi|195338293|ref|XP_002035759.1| GM15104 [Drosophila sechellia]
 gi|194129639|gb|EDW51682.1| GM15104 [Drosophila sechellia]
          Length = 1145

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 74/274 (27%), Gaps = 31/274 (11%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSS 108
           P +L+        + V HN  ++R   K+   I+    R++ T  L            + 
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 109 LKN----ACLALNFSEHLT--KMEEGKALI--ARFCKGSIDSPPYDCTRANHVQAWQLFG 160
           LK+    A   L + E  +   + E   L            +   + T     Q++Q   
Sbjct: 301 LKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSLT 360

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VL 207
            YC  DVEAT  + + L PL             + + G     ++ +             
Sbjct: 361 NYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYE 420

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L         +  E+   L                +      +      +      L  
Sbjct: 421 DLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVELKD 480

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           S  T         RL +    +     L  A   
Sbjct: 481 SGNTPE-----ERRLQAKFQHLYDQQALLPARRP 509



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 91/337 (27%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 759  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 876

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 877  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 921

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             +     + +           E     +Q   +++    R             R   I  
Sbjct: 922  ELDDRAYSSY-----------EASRLAIQRNRTVAEVFHRPNWQGGTESAMFNRLEEIAT 970

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +          +           +VQ+ + D   ++   M+    
Sbjct: 971  GSQPRTPFLGGRLSRALEADTGPDQEQRFL--PTRINWVVQSGAVDFLHLMLVSMRWLMG 1028

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1029 SHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065


>gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
 gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
          Length = 204

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 47/202 (23%), Gaps = 25/202 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +           +L   L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQMSGGDGDAHIVQVAIGQDSAPNLCAMLTD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALNFS 119
             V+ + H   F+        G         CT + +R          LKN     L   
Sbjct: 70  PKVLKLFHFGRFDIAAMYNAFGALAAP--VYCTKIASRLVRTYTDRHGLKNLTQELLGID 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                     +   +      +                L     + D    RE    +  
Sbjct: 128 L---------SKQQQSSDWGAEELSAAQLEYAASDVLYLHRLREELDARLAREGRTEIAQ 178

Query: 180 LSDGERDLWLLDQTINDRGYRI 201
                  +      +      I
Sbjct: 179 ACFDFLPVRARLDLMGWPETDI 200


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 40/165 (24%), Gaps = 55/165 (33%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M ++ +D ET      S   + ++G                             +  MP 
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELWNH---------VATGETYHVYINPERGMPD 51

Query: 56  DLL-------QYLRDETVM--------------CVA--------------HNSLFERILF 80
           +           L +                   V               HN+ F+    
Sbjct: 52  EAFGVHGIGPDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVGDAQLVIHNASFDMKFL 111

Query: 81  KKTLGID----IPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
              LG      IP  + I T  +A  R  G P+SL   C      
Sbjct: 112 NAELGWMGVPLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGID 156


>gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 205

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+       +      +       L      +    +L + L D
Sbjct: 21  VAIDSET--------MGL-RLGRDPLCV-VQLSDGGGDAHLVKLDRTTYDAPNLKRLLTD 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116
             V  + H   F+  +F   LG+        CT + +   RT      LK+    L
Sbjct: 71  PAVTKIFHFGRFDIAMFWLHLGVLTAP--VYCTKIASKIARTYTDRHGLKDISKEL 124


>gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
          Length = 364

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 85/306 (27%), Gaps = 32/306 (10%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +     S 
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQIATEN-EIFLIDTLKDLDF-SK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC- 113
           L     ++ +  + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKDIFENKDIQKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAAAFLGFQTQSSLKTLLK 120

Query: 114 LALNFSEHL---TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             L+              + L  +    +I    Y      ++Q   +  EY     +  
Sbjct: 121 EILDIEMEKESQFSDWRNRPLTQKQLNYAIKDVEYLIQLKEYLQQQLIKSEYQGFFEQEL 180

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYR--IDLDLVLKLQELIAQERKKLDEDIVKLT 228
            E+ K      +         Q  +++  +  I +    ++         +   +   L 
Sbjct: 181 IEIQKTQFNSIENIHTKIGNIQKFDEKTQKNAILIAQWREMIAQEKNIPVRFIFNNKVLY 240

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
               ++ +   +            +       L S      ++   K  I      +   
Sbjct: 241 ALAHKNPKSLNSFDNEEIKKLKPWIKKGVISALNSKQKLEQLSLEQKLGIKISAEINDKI 300

Query: 289 ILKLNT 294
            +  +T
Sbjct: 301 TIFFDT 306


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LW------------- 45
           M ++ +D ET   +P          E   + L  +      V                  
Sbjct: 1   MREIVLDTETTGFEPSEG---DRLVEIGGVELFNH-VPTGRVYHQYINPQRSMPQSAFEV 56

Query: 46  -----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
                D      + +++ +   D       V HN+ F+       LG      +P ++ I
Sbjct: 57  HGLGDDFLADKPLFAEVAEAFLDFIGDAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAI 116

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +AR    G P+SL   C      
Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGVD 143


>gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 376

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 34/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y       L   +  +    + D  E  +    L    
Sbjct: 138 KEIAVDLE--------HHSYRSYL--GFTCLMQISTAEHD-YVVDTLELRSELQMLNDAF 186

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  +    ++ LG+ +       T   +R+ G P  SL +         
Sbjct: 187 TDPKIVKVFHGANMDFDWLQRDLGLYV--VNMFDTHQASRSLGFPHHSLASL-------- 236

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L       +     Y           +    Y + D      ++  +   
Sbjct: 237 ----------LSRYCQVEADKQ--YQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNE 284

Query: 181 S 181
            
Sbjct: 285 L 285


>gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
 gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
          Length = 384

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A       + D   +       L  LR
Sbjct: 22  YITVDTE------FMRETTYW----PKLCLIQAAASPTDAAIIDPMAEGLDLEPFLDILR 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE+++ V H +  +  +F K   +    +    T V A   G               +  
Sbjct: 72  DESILKVFHAARQDVEIFNK---LGAMPRPLFDTQVAAMAAGFG------------DQVS 116

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +    + L     KGS  +       ++          Y   DV     L+ +L     
Sbjct: 117 YEALVRQMLRQELDKGSRFTDWARRPLSDAQLT------YALGDVTHLSALYPKLRDRLQ 170

Query: 183 GERDLWLLDQTI 194
            E  L  +   +
Sbjct: 171 KEGRLDWVMSEM 182


>gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 713

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 33/180 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E            ++Y  Q    L   +   E + L D  +  ++   L    
Sbjct: 233 KEIAVDLE--------HHSFYSY--QGFTCLMQISTRSEDI-LIDCLKLRSLMHLLAPVF 281

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  +    +K  G+ +    +  T +  +T  +P  L            
Sbjct: 282 LNPNILKVLHGAREDIRWLQKDFGLYL--VNFFDTGIALQTLHMPHGLAF---------- 329

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                     +  FC+  +D               +    Y ++D      ++ RL  L 
Sbjct: 330 ---------AVDHFCQVKLDKKYQTADWRIRPIPAE-MVTYARQDTHFLLYVYDRLKTLL 379


>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 364

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
 gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040]
          Length = 385

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+  +      L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQIAYRGDGETDAVLVDPLSGDLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +  R+E V+ V H +  +  +F   +   +  K    T V A   G          
Sbjct: 67  EPLYELFRNEDVVKVFHAARQDLEIF--WVDAGVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ + CK  +D        +    +      Y   DV   R+++
Sbjct: 118 QVGYET----------LVRKICKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    D  +    +
Sbjct: 167 EHLRKELDKTKRSHWV 182


>gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
          Length = 364

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 38/177 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                E L    E +          +    +      +   V+      EY ++ + 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQLV 168


>gi|297538972|ref|YP_003674741.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
 gi|297258319|gb|ADI30164.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
          Length = 515

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 114/396 (28%), Gaps = 60/396 (15%)

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-------NHVQAWQLFGEYCKRDVEA 169
              +   K +  KAL+  +     D   Y               Q +      C  ++  
Sbjct: 83  KLDKETIKEKSIKALMKPYYTDIKDLDNYFEEYYRRISFELETYQLFSHMLFSCWENMTV 142

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             +         + E  ++ L   +  RG + D  ++ + ++ I  +  +  +    +  
Sbjct: 143 LAKSKGEWDRYIEVELPVFNLMTKVAVRGIKTDNKILREHKKNIDDDFFRELKKFA-IEY 201

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
           G+         L   L         D++E ++  +L    +     + ++       S +
Sbjct: 202 GLFFEVPIANVLHDILSDRG----YDLTEMSVDFVLEFLPMVDNFGERVIALQKLQKSRV 257

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
                L+    S  R+    + + ++ T R        QNL ++                
Sbjct: 258 ----ALANITLSKTRVCPIAETH-STVTSRMYYKNPTVQNLAKRY--------------- 297

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
                          R   IA N + L   D    E  ++A ++ +    + ++N +   
Sbjct: 298 ---------------RDIFIADNDRTLSYVDYDQFEIGIMAALSKDKKLEEIYSNTDIYK 342

Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
             +             + +R+I K + LA  Y              G D +         
Sbjct: 343 KFSLEI-------FGDEGKRSISKKLFLAFTYGMTHVNLLEAVKQHGGDKEVAR------ 389

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
             F+ +       + ++  + E      L G   E 
Sbjct: 390 LFFDQFAVFIEWRVGIEKLFLENGRISTLFGNNLER 425


>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 364

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
 gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +  +   +L   L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          L+N    L   +
Sbjct: 70  PNVLKLFHFGRFDIAAMYHAFGALAAP--VYCTKIASRLVRTYTDRHGLRNLTQELIGVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +                       L       D    RE
Sbjct: 128 IS--------KQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDRE 171


>gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
          Length = 382

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLS 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ V H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+  V KL  L     + L +    +      +    
Sbjct: 189 DDCELVLAKTHKLQERDSEKAYLDIPNVWKLNPLELSRLRILAQWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 248 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLSQARRISSNDYPKSIER 306

Query: 299 VSSDGR 304
           +S D R
Sbjct: 307 ISEDPR 312


>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 363

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200]
 gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
 gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
          Length = 364

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
          Length = 364

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|70919502|ref|XP_733432.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56505224|emb|CAH83005.1| hypothetical protein PC300270.00.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 24/208 (11%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
              QN+  + R    L          +T        +              L+  D   +
Sbjct: 3   PNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQN------------LLTFDYKQM 50

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           E  V+A+++ +   +K   N +    T          + V+KE R + K +   + Y   
Sbjct: 51  ELFVMAYLSFDSQLLKMLNNSDVFVETAKVLF---NTNDVTKELRRMTKTVIYGILYGQS 107

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC- 503
                       L + +        + F  +          +           LIG    
Sbjct: 108 EN-----GLAKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKRL 162

Query: 504 --ELVKKAWR-AKHQGVLQLWKDLTEGF 528
               +K  +R + +  +     D+ +  
Sbjct: 163 VDPTIKNKYRISMNTPIQGCAADIMKFA 190



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/186 (6%), Positives = 37/186 (19%), Gaps = 45/186 (24%)

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFS---QNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
             + Y         M ++  + ++           T       +   + +         A
Sbjct: 53  FVMAYLSFDSQLLKMLNNSDVFVETAKVLFNTNDVTKELRRMTKTVIYGILYGQSENGLA 112

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
               +     + +   +   +  V +  +        +      I  +R           
Sbjct: 113 KNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKR----------- 161

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613
                             D      Y  +                   +Q  + DI+   
Sbjct: 162 ----------------LVDPTIKNKYRISM---------------NTPIQGCAADIMKFA 190

Query: 614 MKNATK 619
           + +  K
Sbjct: 191 LLSCHK 196


>gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16]
          Length = 203

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 28/205 (13%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +D+ T        +G+    +   + L   +  +    +     ++    +L++ L D+ 
Sbjct: 16  LDLGTIVAVDGEFLGLNVRRD--RLCLIQVSSGNSDAHIVQLDRENYNAPNLVKILADKN 73

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSEHL 122
           +  + H +  +    K  L  D+      C+ +   LART     SL             
Sbjct: 74  IKKLFHYARSDLTHIKYYLKTDVN--NIECSKIKSKLARTFSDSHSL------------- 118

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 K LI  F    +D      T     +  Q   +YC  DV    ++   L  + +
Sbjct: 119 ------KTLIKEFAN--VDVSKQFQTSDFGGELSQGQLKYCANDVIYLHKIHSELDKILE 170

Query: 183 GERDLWLLDQTINDRGYRIDLDLVL 207
            E+ + L  + I     RI LDL+ 
Sbjct: 171 REKRMDLYRECIKFLHTRIKLDLLE 195


>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1]
          Length = 729

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 30/196 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS- 55
             + +D+E     T                  +  L     D +   L D       P  
Sbjct: 239 KVIAVDLEHHDYRTY---------------HGITCLMQLTTDTKKDYLIDPLSPELRPHL 283

Query: 56  -DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC 113
            +L     D  ++ V H +  + I  ++ LG+ +       T   +R  GL   SL +  
Sbjct: 284 VNLNVIFTDPNIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTYHASRELGLGRHSLAHLL 341

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                     K    K  +A +    ++S   +  +A+     ++F +     V+   +L
Sbjct: 342 ETY----VKFK-TSKKWQLADWRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQNPDKL 396

Query: 174 FKRLIPLSDGERDLWL 189
            K L          + 
Sbjct: 397 KKVLYESRKVSNRRYE 412


>gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
 gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
          Length = 228

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 40/154 (25%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGV-------------WAY--------AEQAVITLCA 34
           M ++ +D ET      S   + ++G                Y        AE   +    
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPERSMPAEAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGID-IPS 90
              DD    L D+ + + +  D L ++ D     V HN+ F+        K +G+  IP 
Sbjct: 61  ---DD---FLRDKPKFAQIGQDFLDFIGDS--KLVIHNAAFDIKFLNAELKWMGLPQIPW 112

Query: 91  KRWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
           ++ + T  +A  R  G P+SL   C         
Sbjct: 113 EQALDTLAIARKRFPGSPASLDALCRRFGIDNTS 146


>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 209

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 37/131 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA------------------------VITLCAYA 36
           M  LF D ET S +P     +      A                         I   +  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASTKPQITTGKNFFFTVDEMDPSAKEIHGFSL- 59

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSK 91
                 KL++ ++       + ++L D       + HN  F+    K    +LG D   K
Sbjct: 60  -----EKLYELSDGQYFEDLVPEFLEDFMTADFLIGHNVNFDVRFLKHELLSLGEDFYPK 114

Query: 92  RWICTSVLART 102
              CT   A  
Sbjct: 115 NVFCTM--AYY 123


>gi|291335496|gb|ADD95108.1| DNA polymerase 2 [uncultured phage MedDCM-OCT-S04-C348]
          Length = 228

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 33/223 (14%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---PSDLLQYLR--D 63
           E      L   G+  Y +   I             ++D T Q  +   P  + + +   +
Sbjct: 21  EKWYVFDLETNGL--YDDVTEIFCI---------VIYDVTRQQTITYRPDSIDRAIESLN 69

Query: 64  ETVMCVAHNS-LFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
              + + HN   ++  + +K      +  +  I T +  R       L      L     
Sbjct: 70  NADVLIGHNIIFYDIPVLQKLKPSFVLDKQHVIDTLICTRLIWPKEKL------LESDTT 123

Query: 122 LTKMEEGKALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                 G  L       +       Y     +     +    YC +DV  T +LF+ +  
Sbjct: 124 SYARVPG-GLKGSASLKAWGYRLSDYKIDFKDFTSFSEDMLSYCVQDVNVTTKLFEHIQN 182

Query: 180 L------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
                   + E       +     G+  D+D  +   + +  +
Sbjct: 183 QTISPTSLELEHTFASCIERQIRSGFPFDIDAAIAFVDELEYK 225


>gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003]
 gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB
           1003]
          Length = 231

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 33/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET   +P          E   + L                       A+A  
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELMNHVPTGRTYHQYINPERAMPQEAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRW 93
                 L D+ +  A+  D L ++ D++ + + HN+ F+       LG      +P  R 
Sbjct: 58  GLGDDFLRDKPKFGAIAQDFLDFIGDDSKLVI-HNAAFDMKFLNAELGWVQKPLLPMDRA 116

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           + T  +AR    G P++L   C      
Sbjct: 117 LDTLAMARRKFPGSPATLDALCRRFGID 144


>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
 gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
          Length = 832

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 43/181 (23%), Gaps = 34/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S+  +D+E            +   +     L   +  D    + D     A    L    
Sbjct: 293 SEFAVDLE---------HHSYRSFQGFTC-LMQVSTRDHD-YIVDTLALRADLHVLNDTF 341

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  V+ V H +  +    ++  G+ +       T   +   GLP  SL           
Sbjct: 342 TDPKVVKVFHGADMDIQWLQRDFGVYV--VNMFDTGQASHVLGLPRHSLAYL-------- 391

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L             Y               +Y + D      ++  +   
Sbjct: 392 ----------LKTYCDVEPDKK--YQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSE 439

Query: 181 S 181
            
Sbjct: 440 L 440


>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
 gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
          Length = 364

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|262038498|ref|ZP_06011867.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261747367|gb|EEY34837.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 54

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 624 IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
           ++L VHDE++ E  D         +  +M    ++ + + L A G  AK +
Sbjct: 1   MLLQVHDELIFEVKDDAIEKYTDKIKEIMENTVNF-EDIKLSANGSVAKDW 50


>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
          Length = 364

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 118

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 119 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 166


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D+     +      Y+ D   + VAHN+ F+    +   K +GI       + T +L+
Sbjct: 281 VVDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKDMGIRFD-IPVLDTMILS 337

Query: 101 RTN---GLPSSLKNACLALNFSEHLTKMEEGKALIA 133
                     SL + C              G A++ 
Sbjct: 338 NFLDGPDAGHSLDDICDRYGIEITDRHTALGDAMVT 373


>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
          Length = 837

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 57/503 (11%), Positives = 129/503 (25%), Gaps = 25/503 (4%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S+L ID+E  S         +   +     L   +   E   L D          L    
Sbjct: 286 SELAIDLEAHS---------YRTYQGFTC-LMQLSTRSED-YLIDTLALRDDLKLLNVIF 334

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  + +  ++     +       T    R    P  SL           
Sbjct: 335 ADPAILKVLHGADSDILWLQR--DHSLYIVNMFDTGQATRVLNFPRHSLAWLLQHY---- 388

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K ++   L     +   +   +      H   +     + +   +   +    L  +
Sbjct: 389 CNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQGNEQ-ANLLRAV 447

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
               ++L L              D + ++   +     +L   +    D + R      +
Sbjct: 448 YQRSKELCLQRYEKPFYSQATAEDALNRMSRSLVPSAVELFMALHAWRDQVARDED--ES 505

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHS-NITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            R  L     ++L   +      IL+    I  L +  +        +    ++ +  + 
Sbjct: 506 PRYVLPDHMLLELASRAPTETGQILACCQPIPPLVRVNVQLIQDIILTKGEAIHAMMASS 565

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
           +       T    G   T R     F  Q L  Q+        ++               
Sbjct: 566 NRFYAADATDFHGGHEETVRRVHR-FDKQFLGAQDHGHLFRKPSLTFAVPASAPVAKSQY 624

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               + + ++AS G + +  ++       L      + +++A             +  +T
Sbjct: 625 KGRKLAAEVLASLGSERIFTEVPEEHRGALDHAKDYEARLEALRQKATDAAAGADE--ST 682

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
                  ++ + G     A+           +A    L+     Q  +  S      + +
Sbjct: 683 AGSNAVPDESSAGTNRASAIAINDSDDDLDIVALADRLNASPPEQGDEQPSKKGKHPKQD 742

Query: 480 SHHLWMQDQYPEFAVKDKLIGTA 502
                               G  
Sbjct: 743 KSLKKTVQAADVKRYAYTTSGEE 765


>gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 233

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 39/146 (26%), Gaps = 24/146 (16%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLC---------AYAWDDEPVKLW- 45
           M ++  D ET          +   GV                     A   + + V    
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60

Query: 46  --DRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKKTLGI----DIPSKRWICTSV 98
             D   +      + ++L        VAHN+ F+        G      I +   + T  
Sbjct: 61  AADLAGKPTFAEIVQEWLDFTDGAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDTLA 120

Query: 99  LARTNGL--PSSLKNACLALNFSEHL 122
           LAR      P+SL   C         
Sbjct: 121 LARRKHPMGPNSLDALCRRYGIDNTK 146


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 32/154 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDE----------PVKLWD 46
             D+ET    P     +   A    I               +                W+
Sbjct: 455 AFDLETTGLDPEKDAIIALGAVH--ILGKTVLRHEVFEALVNPGRPIPKASTEVHGLTWE 512

Query: 47  RTEQSAMPSDLLQ----YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
             ++     ++L     +L D   + +AHN  F+    ++   + I     + T +L+  
Sbjct: 513 MLKEKPKLEEVLPGFRLFLED--TVLLAHNGAFDMAFLRR---VGIDQPPLVDTLLLSYL 567

Query: 103 NGL---PSSLKNACLALNFSEHLTKMEEGKALIA 133
                    L+                 G AL+ 
Sbjct: 568 LFPDLQDHRLETLAERFGVPVIGRHTALGDALMT 601


>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain
 gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn
 gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
 gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
          Length = 410

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 16/147 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E              Y     I      +  +    L D  +       L + 
Sbjct: 107 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 154

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             + +++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          
Sbjct: 155 FTNPSIVKVFHGAFMDIIWLQRDLGLYV--VGLFDTYHASKAIGLPRHSLAYLLENFANF 212

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   K +     I    K    +   D
Sbjct: 213 KTSKKYQLADWRIRPLSKPMTAAARAD 239


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 39/150 (26%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------- 52
           M ++  D ET               E   I L  + +    V                  
Sbjct: 1   MREIIFDTETTGLDNRA----DRIIEIGGIELFNH-FPTGNVIHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
                            +  ++L +  D     +AHN+ F+         +     I  +
Sbjct: 56  VHGITDEFLKDKKPFAEVAEEILTFFGDA--KWIAHNATFDMGFINAELARIGLPPILPE 113

Query: 92  RWICTSVLARTNGL--PSSLKNACLALNFS 119
           R + T  +AR      P+SL   C      
Sbjct: 114 RVLDTLSMARRKHPMGPNSLDALCRRYGID 143


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET          +    E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAV 56

Query: 49  EQ------------SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP---SKR 92
                         + +  ++L +  D     +AHN+ F+      +   I +P    +R
Sbjct: 57  HGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  +AR      P+SL   C      
Sbjct: 115 VVDTLSMARRKHPMGPNSLDALCRRYGVD 143


>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 294

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 70/273 (25%), Gaps = 45/273 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             L +D E+ S           Y E   + L   +   +   + D      +  D+    
Sbjct: 33  RVLALDTESNS--------FHVYRE--RVCLLQLSTRTQD-FVVD-----PISVDVRPLG 76

Query: 61  -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            +  +    V H + ++     +  G  IP  R   T + AR  G P         L  S
Sbjct: 77  EILCDGREVVLHGADYDVRCLHREYGWRIP--RLFDTMIAARRLGRPG--------LGLS 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177
               +   G  L   F +      P    +            Y   D      LF  L  
Sbjct: 127 AL-VESHFGVRLSKAFQRSDWGRRPLTPDQ----------LAYAALDTHFLLPLFDLLTG 175

Query: 178 ----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                   D          ++  R    D +   +++     +                R
Sbjct: 176 ELAARGALDEAWKESQRIASVVARERVFDPEGWRRVKGARELDAPGKAVLRALWIAREER 235

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
           +          L     +++      T +++ +
Sbjct: 236 ARASDRPPFKVLGEPAMLEIARRRPATREALAA 268


>gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183]
 gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175]
 gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183]
 gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175]
          Length = 369

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 76/315 (24%), Gaps = 60/315 (19%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV L D          
Sbjct: 24  KILVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLA-------Q 66

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  ++ + H+   +  +F               + + A   G+           
Sbjct: 67  FWALLSDPNIIKLVHSCSEDLEVFAHYG--KCQPTPLFDSQIAASLCGMGHG-------- 116

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G +       T        +    Y   DV    +L+ +
Sbjct: 117 ----------VGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQ 166

Query: 177 LIPLSDGERDLWLLDQTINDRGYR------IDLDLVL-----KLQELIAQERKKLDEDIV 225
           L      +  L  L +              +D   +      +L E+     K L +  +
Sbjct: 167 LEAKLSVQGRLAWLYEEGERMTQGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRL 226

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +       +          +           S       L   N     +  I  +    
Sbjct: 227 EKALVRDLALGFVVKDHGLI--ALAKKQPKSSAD-----LFKLNDLTEQEKRIHGKDLLR 279

Query: 286 GSAILKLNTLSEAVS 300
                 L  L E V 
Sbjct: 280 VLQTADLVNLPELVD 294


>gi|281341789|gb|EFB17373.1| hypothetical protein PANDA_008249 [Ailuropoda melanoleuca]
          Length = 1214

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 96/400 (24%), Gaps = 46/400 (11%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    +    R G           + 
Sbjct: 771  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-PDYDEEGRYGAI------LPQVV 823

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                      +      R +            +++ + A  G  LV AD+   E  + A 
Sbjct: 824  TAGTITRRAVEPTWLTARPDLPPLQPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAV 883

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   K+      Y  G   
Sbjct: 884  LGDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQPF 943

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    + L  + +          +     L  
Sbjct: 944  AERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGE---------WLVRELHLPV 994

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                     +  L K   E       +   + A R              ++   L S   
Sbjct: 995  DRTEDGWVSLQDLRKIQREASRKSRWKKWEVVAERAWMGGTES------EMFNKLES--- 1045

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKL---TENIVQAISRD---ILCEGMKNATKN- 620
            +  SD           +  L      G  +      +VQ+ + D   ++   MK   +  
Sbjct: 1046 IAMSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEF 1105

Query: 621  --GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                   +++HDE+     +   +           L   M
Sbjct: 1106 AIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1145


>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
 gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
          Length = 380

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 95/312 (30%), Gaps = 31/312 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D + V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGKHVSLIDPLAITDFSP--FVALLA 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 80  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 189 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 248 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRISSNDYPKSIER 306

Query: 299 VSSDGRLRGTLQ 310
           +S D R + T+Q
Sbjct: 307 ISEDPRYKKTIQ 318


>gi|47934632|gb|AAT39754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 79

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 24/96 (25%)

Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            GR+ G +   GA  TGR +        +P                              
Sbjct: 6   TGRIHGKVNTCGA-VTGRMTHSSPNLAQVPASH-----------------------SPYG 41

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
           +  R      +G  LV  D +G+E R+LA    ++ 
Sbjct: 42  EDCRELFTVEDGYCLVGMDASGLELRMLAHYMNDED 77


>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 894

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 13/116 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              YA    ++L   +  D+   +            L +  
Sbjct: 288 KEIAVDLE--------HHDTRTYAGL--LSLMQISTRDQDWIVDTLKPWRHQLEVLNEVF 337

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
            +  ++ V H +  +    ++ LG+ I       T   A   G P  SL       
Sbjct: 338 TNPKIVKVFHGAHMDMQWLQRDLGLYING--LFDTFFAAEILGYPQRSLAYLLKRF 391


>gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107]
 gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107]
          Length = 214

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 58/213 (27%), Gaps = 36/213 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M  L +D E         +G+    +   + L   A   + V         +   +L + 
Sbjct: 29  MPSLAVDTE--------AMGLIHGRD--RLCLVQIADAQDRVACVRIGLGQSTAPNLQRL 78

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALN 117
               +V  V H + F+        G+DI  +   CT V +R          LK+  + L 
Sbjct: 79  FEAASVEKVFHFARFDVAALA--AGLDIAVQPLFCTKVGSRLGRTYTPRHGLKDLVMEL- 135

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     G  L         D            +   +   Y   DV        +L
Sbjct: 136 ---------VGVEL---------DKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNQL 177

Query: 178 IPLSDGE--RDLWLLDQTINDRGYRIDLDLVLK 208
             +   E   +L     T       +D     +
Sbjct: 178 ETMLRREGRWELAQRCFTCIPVIAELDRMRFNQ 210


>gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185]
 gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195]
 gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223]
 gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185]
 gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195]
 gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223]
 gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678]
          Length = 369

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 76/315 (24%), Gaps = 60/315 (19%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV L D          
Sbjct: 24  KILVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLA-------Q 66

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  ++ + H+   +  +F               + + A   G+           
Sbjct: 67  FWALLSDPNIIKLVHSCSEDLEVFAHYG--KCQPTPLFDSQIAASLCGMGHG-------- 116

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G +       T        +    Y   DV    +L+ +
Sbjct: 117 ----------VGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQ 166

Query: 177 LIPLSDGERDLWLLDQTINDRGYR------IDLDLVL-----KLQELIAQERKKLDEDIV 225
           L      +  L  L +              +D   +      +L E+     K L +  +
Sbjct: 167 LEAKLSAQGRLAWLYEEGERMTQGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRL 226

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +       +          +           S       L   N     +  I  +    
Sbjct: 227 EKALVRDLALGFVVKDHGLI--ALAKKQPKSSAD-----LFKLNDLTEQEKRIHGKDLLR 279

Query: 286 GSAILKLNTLSEAVS 300
                 L  L E V 
Sbjct: 280 VLQTADLVNLPELVD 294


>gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 389

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 30/194 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E      +     +       ++L   AW +    + D        S L    
Sbjct: 25  KFIAVDTE-----FIRNCNEYY----PRLSLIQIAWSEGK-CVIDVLADDIDLSVLESIF 74

Query: 62  RDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            ++ ++ + H+   +   L  K   I         + + A            C   + + 
Sbjct: 75  YNKEIVKIFHDCKQDIDALLTKFPRI---PYPIFDSQIAAMF----------CAYYDNAV 121

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             +K+                             +      Y   DV    EL++ L   
Sbjct: 122 GYSKLVA-----QFLDVSLDKLTLKRSNWLMRPLSDDKIQ-YALDDVVYLYELYQVLYDN 175

Query: 181 SDGERDLWLLDQTI 194
               + L    + +
Sbjct: 176 LISSKRLLWFLEEM 189


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 39/152 (25%), Gaps = 42/152 (27%)

Query: 1   MSKLFIDIETRSPQP--------------------------LPKVGVWAYAEQAVITLCA 34
           M ++  D ET                               +   G   +AE   +   +
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKKTLGI----DIP 89
            A         D   +      + ++L        VAHN+ F+        G      I 
Sbjct: 61  AA---------DLAGKPTFAEIVEEWLAFTDGAKLVAHNATFDIGFLNVEFGRLGHPVID 111

Query: 90  SKRWICTSVLARTNGL--PSSLKNACLALNFS 119
               + T  LAR      P+SL   C      
Sbjct: 112 PGLVVDTLALARRKHPMGPNSLDALCRRYGID 143


>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
 gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
          Length = 805

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 16/167 (9%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y     ++L   +  D+   +            L +  
Sbjct: 252 KEIAVDLE--------HHDNRSYIGM--VSLMQISTRDKDWIVDTLKPWRRKLECLNEVF 301

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++ V H +  + +  ++ LG+ I       T   AR+ G P    +    L     
Sbjct: 302 ADPNILKVLHGAYMDIMWLQRDLGLYI--VGLFDTHHAARSLGYPGG--SLA-YLLERHV 356

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
             K ++   L     +       ++  RA+      +F       VE
Sbjct: 357 QFKAQKQYQLADWRIRPLGKE-LFEYARADTHFLLYIFDNMRNELVE 402


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET          +    E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAV 56

Query: 49  EQ------------SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP---SKR 92
                         + +  ++L +  D     +AHN+ F+      +   I +P    +R
Sbjct: 57  HGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  +AR      P+SL   C      
Sbjct: 115 VVDTLSMARRKHPMGPNSLDALCRRYGVD 143


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET          +    E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAV 56

Query: 49  EQ------------SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP---SKR 92
                         + +  ++L +  D     +AHN+ F+      +   I +P    +R
Sbjct: 57  HGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  +AR      P+SL   C      
Sbjct: 115 VVDTLSMARRKHPMGPNSLDALCRRYGVD 143


>gi|47934610|gb|AAT39743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 96

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 24/114 (21%)

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343
                + ++ +  E VS + R+ G +   GA  TGR +        +P            
Sbjct: 2   LGKERVAQVESWLEFVSDEHRVHGKVITNGA-VTGRMTHHSPNMAQVPSSS--------- 51

Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397
                                R C     GK LV AD + +E R+LA    ++ 
Sbjct: 52  --------------SPWGHECRDCWTVDEGKILVGADASSLELRMLAHYMKDES 91


>gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200]
          Length = 369

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 88/309 (28%), Gaps = 48/309 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV L D          
Sbjct: 24  KILVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLA-------K 66

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  ++ + H+   +  +F               + + A   G+           
Sbjct: 67  LWALLANPNIIKLVHSCSEDLEVFAHYG--QCQPVPLFDSQIAASLCGMGHG-------- 116

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G +       T        +    Y   DV    +L+ +
Sbjct: 117 ----------VGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQ 166

Query: 177 LIPLSDGERDL-WLLDQTINDRGYRIDLDLVL----KLQELIAQERKKLDEDIVKLTDGI 231
           L      +  L WL ++ +     R+D   +     K++        +L    V     +
Sbjct: 167 LEAKLVAQGRLNWLYEEGVRMTEGRLDTPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRL 226

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
            ++  +  AL   +     I L      ++  +L   N     +  I  +        + 
Sbjct: 227 EKALARDLALGFVIKDHGLIALAKKQPKSMTELLK-LNDLTEQEKRIHGKEILRVMQTVD 285

Query: 292 LNTLSEAVS 300
           L  L E V 
Sbjct: 286 LVNLPELVD 294


>gi|195031476|ref|XP_001988346.1| GH10618 [Drosophila grimshawi]
 gi|193904346|gb|EDW03213.1| GH10618 [Drosophila grimshawi]
          Length = 1147

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/587 (11%), Positives = 149/587 (25%), Gaps = 64/587 (10%)

Query: 41  PVKLWDRTEQSA---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            V+  D  +      M  +L+        + V HN  ++R    +   ++    R++ T 
Sbjct: 222 HVEPIDVAQSDRPHYMLDELIPLGSGAPGLVVGHNVSYDRARLLEQYLLEDTGTRFVDTM 281

Query: 98  VLARTNG-----LPSSLKN----ACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPY- 145
            L            + LK+    A   L++ E  +   + +   L        +   P  
Sbjct: 282 SLHMCVSGVTSYQRAMLKSKKEPAAEDLDWLEQSSLNSLVDVHRL--YCGGEPLSKEPRN 339

Query: 146 ---DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY--- 199
              + T     Q +Q    YC  DVEAT  +   L PL        +    + + G    
Sbjct: 340 IFVEGTLEQVRQQFQSLVNYCAGDVEATHRILTVLYPLYAERFPHPVTLAGMLEMGSAYL 399

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
            ++ +   +         + L+ +            R+       L              
Sbjct: 400 PVNSNW-ERYIRDAQLAYEDLNIEAKYHLG------RRAEEACALLHDEQYRQH------ 446

Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRLRGTLQFYGASRT 317
                L   +     + L L          L    L     ++++ R       +   + 
Sbjct: 447 -----LWLWDEDWSVQQLKL--KQLPKRKQLPTVPLQDERQLNAEQRRLLQKFQHLYDQR 499

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
                        P+  R          +    +   +P    +  + + +         
Sbjct: 500 ALLPARRPLLPGYPQWYRKLCQKPPPDYSEEELQQQDEPWTPGASGISTGM--------- 550

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437
                 I  ++L+             +G    V   +   +   D   ++      + E 
Sbjct: 551 -----QIAPKLLSLCWEGYPLHYQKGHGWGFLVPFRSGDNSRQTDLPIEQLLERCAIPEF 605

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
           A  Y         M    G   +Q ++        +  ++ E  +        +      
Sbjct: 606 ARLYAAAENGDMAMDMLPGQVEEQLAKRQFFKKISQRQQRLEEKYKGSGVWCNQVLEDCC 665

Query: 498 LIGTACELVKKAWRAKHQGVLQL-WKDLTEGFA----CVVQEGGSISARRVANVPRLVMR 552
                      ++R  +        K      +            I   R+ +  R    
Sbjct: 666 FFLKLPHKNGPSFRVGNPLSKDFLNKFSENALSSGDPTCQAASRVIEIARMMSYWRNNRD 725

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
           R    + I LP+ +         + +       Q++   T   +  E
Sbjct: 726 RILSQMVIWLPAQQLPADLRSHAERTAYGAICPQVVVAGTLTRRAME 772



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 82/295 (27%), Gaps = 37/295 (12%)

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +R+ + A  G KLV AD+   E  + + +       +  A        + +K+  +
Sbjct: 786  IGSELRAMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGS 845

Query: 420  PIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +  ++       R   KV+  A  Y  G +  +T+       L       K+   F   
Sbjct: 846  DMHSITAKVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPSLSATEAKAKAMKMFGAT 905

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV--LQLWKDLTEGFACVVQ 533
            +    +   +++++ +        G   + +          V     W+  TE       
Sbjct: 906  KGKRIY--RLREEFHDELEDRTYSGYEAKRLALQRNRSIGEVFHRPSWQGGTESAMFNRL 963

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
            E  +   +         + R            R L                         
Sbjct: 964  EEIATREQPETPFLGCRLSRALETRGDADQEQRFL------------------------- 998

Query: 594  GGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                   +VQ+ + D   ++   M+          L+ HDE+     D   +   
Sbjct: 999  -PTRVNWVVQSGAVDFLHLMLVSMRWLLGPHARFCLSFHDELRYLVKDELAYKAA 1052


>gi|115658831|ref|XP_001188956.1| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
 gi|115686030|ref|XP_797000.2| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
          Length = 48

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 605 ISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDTPYFSVG 645
            + DI    M +  K           +++ +HDE++ E  D     V 
Sbjct: 1   SAADICKLAMIHIMKVLSEKNTVRARLLVQIHDELLFEVHDEDINEVK 48


>gi|194039637|ref|XP_001927099.1| PREDICTED: DNA polymerase subunit gamma-1 [Sus scrofa]
          Length = 1224

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/397 (10%), Positives = 96/397 (24%), Gaps = 44/397 (11%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R           GR+   + Q     
Sbjct: 778  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPAFD----EEGRYGAILPQV---- 829

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                +   +T+                     +++ + A  G  LV AD+   E  + A 
Sbjct: 830  ---VTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAV 886

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   K+      Y  G   
Sbjct: 887  LGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQPF 946

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    + L  + +          +    +L  
Sbjct: 947  AERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGE---------WLVRELDLPV 997

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                     +  L K   E      ++   + A R             +   I    + R
Sbjct: 998  DRTEDGWISLQDLRKIQREASRKSRRKKWEVVAERAW-TGGTESEMFNKLESIATSDTPR 1056

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN---G 621
                  +   +   +                  +VQ+ + D   ++   MK   +     
Sbjct: 1057 TPVLGCRISRALEPSTVQGEFMTSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFAID 1111

Query: 622  YDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                +++HDE+     +   +           L   M
Sbjct: 1112 GRFCISIHDEVRYLVREEDRYRAALALQVTNLLTRCM 1148


>gi|2289912|gb|AAC47658.1| mitochondrial DNA polymerase catalytic subunit precursor
           [Drosophila melanogaster]
          Length = 1145

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 75/274 (27%), Gaps = 31/274 (11%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSS 108
           P +L+        + V HN  ++R   K+   I+    R++ T  L            + 
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 109 LKN----ACLALNFSEHL--TKMEEGKALIARFCKGSID--SPPYDCTRANHVQAWQLFG 160
           LK+    A   L + E      + E   L       S +  +   + T     Q++Q   
Sbjct: 301 LKSKKEPAAEDLGWLEQSPLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLT 360

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VL 207
            YC  DVEAT  + + L PL             + + G     ++ +             
Sbjct: 361 NYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYE 420

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
            L         +  E+   L                +      +      +      +  
Sbjct: 421 DLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVEIKD 480

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           S  T         RL +    +     L  A   
Sbjct: 481 SGNTPE-----ERRLQAKFQHLYDQQALLPARRP 509



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 97/337 (28%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 759  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 876

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 877  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 921

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             ++    + +           E     +Q   +++    R             R   I  
Sbjct: 922  ELEDRAYSSY-----------EASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIAT 970

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +    A +   +E+ +       +VQ+ + D   ++   M+    
Sbjct: 971  GSQPRTPFLGGRLSRALE--ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMG 1028

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1029 SHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065


>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
 gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
          Length = 421

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 41/197 (20%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + L   A   + V + D        + L
Sbjct: 54  FITIDTEFVRERTYW---------------PELCLVQLA-SADEVVVVDALAPGMDLAPL 97

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L DE V+ V H +  +  +F      D   +    T V A   G             
Sbjct: 98  GELLADEGVIKVFHAARQDLEIFLHLF--DRLPQPLFDTQVAAMVAGYG----------- 144

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                   + G   +     G+     +  +            EY   DV   RE+++RL
Sbjct: 145 -------DQVGYDSLVASVVGAQIDKSHRFSDWAARPLSAAQIEYAAADVTYLREVYQRL 197

Query: 178 IPLSDGERDLWLLDQTI 194
           +   D E     +   +
Sbjct: 198 VAQLDREGRKDWMTAEM 214


>gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
 gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
          Length = 214

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 30/202 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E         +G+    +   + L       + V              L + +  
Sbjct: 32  IAVDTE--------AMGLIHGRD--RLCLVQICDPADNVACVRIGLGQTSAPRLQKLMEA 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            +V  V H + F+        G+ I      CT V +R      S           E + 
Sbjct: 82  PSVEKVFHFARFDVAALA--SGLGIYVLPIFCTKVASR-LARTYSP-----RHGLKEVVM 133

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           ++      +    +            ++   A      Y   D        +RL  +   
Sbjct: 134 ELV----GVELDKQAQSSDWGRVEELSDVQLA------YAANDARYLLPARQRLEMMLRR 183

Query: 184 E--RDLWLLDQTINDRGYRIDL 203
           E   ++     +       +D 
Sbjct: 184 EGRWEIAQRCFSCIPVIAELDR 205


>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
          Length = 421

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 75/262 (28%), Gaps = 41/262 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +L +D+E  S      +            L   +  D+   + D          L +  
Sbjct: 93  KELGVDVE-YSDHGYKALT----------CLVQISTPDKD-YIIDAIALKDELHALNEVF 140

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSE 120
            +  ++ + H+++ +    ++ LG+ +       T +  +  G     L       + ++
Sbjct: 141 TNPDIVKIFHSAVNDLKWLQQDLGVFV--VNLFDTQIAMKALGYKKLGLDALLQDYHVAK 198

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                   K +  +  +                     F +Y + D       + +L   
Sbjct: 199 D-------KTMQRQDFRRRP--------------LPPKFKDYARVDSHYLIGFYHKLKNE 237

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY- 239
                 L  +    N+   +I    V    +      ++  E+I K    ++        
Sbjct: 238 LIEANLLRAVLDDCNN-CCKILYPKVE---DEAYLSVRRNVEEIHKRQLLVLEKLNSWRH 293

Query: 240 ALRMYLFLITGIDLVDMSEGTL 261
            +  YL    G  L   +  TL
Sbjct: 294 QIAQYLDKNVGCVLSKSNMETL 315


>gi|327198232|ref|YP_004306808.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591758|dbj|BAJ09178.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 305

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 63/213 (29%), Gaps = 37/213 (17%)

Query: 2   SKLFIDIET------RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL------WDRTE 49
             L +DIET         +    VG     ++  +   +  W      L      +D   
Sbjct: 49  KVLILDIETAPAIGYYWSRWKTTVGQNQVLQEGYLLTFSAKWLGSDDILECKLPDFDLYN 108

Query: 50  QSAMPS-DLLQYLR---DETVMCVAHNS-LFERI----LFKKTLGIDIPSKRWICTS-VL 99
                  +LL+ L    DE    VAHN   F+         K   +     + I T  + 
Sbjct: 109 TEPKNDRELLKVLAGLLDEADFVVAHNGRKFDLPTINAHLVKHDILPPSPYKIIDTCDIA 168

Query: 100 ARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
            +    PS SLK+  + L           G  L             +        +AW  
Sbjct: 169 KKVFKFPSNSLKSLAIFLKCQHDKL-DTGGFEL-------------WARVMDGDPEAWDH 214

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
             EY   DV    E++ +L    +    L  L 
Sbjct: 215 MMEYNVFDVIVLEEVYLKLRAWYNTHPSLSALI 247


>gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
 gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
          Length = 205

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 53/201 (26%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+    +   + +   +       L      S   + +L   L 
Sbjct: 20  IAVDTET--------MGLITPRD--RLCVVQISDGQGDEHLVRFNPGSDYAAPNLRAVLA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H   F+    +  +GI        CT + +R          LK     L   
Sbjct: 70  DPARLKLYHFGRFDIAAIRHYMGIVAAP--VYCTKIASRLVRTYTDRHGLKELVREL--- 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L     K    S       ++         EY   DV     L   L  
Sbjct: 125 -----------LGQELSKVQQSSDWGGPVLSDPQ------KEYAASDVRYLHALKAELDK 167

Query: 180 LSDGERDLWLLDQTINDRGYR 200
               E  + L     +   +R
Sbjct: 168 RLVREGRMELAQACFDFLPHR 188


>gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917]
 gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917]
          Length = 213

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 54/209 (25%), Gaps = 30/209 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S+L +D E         +G+    +   + L      D+ V              L   +
Sbjct: 29  SRLAVDTE--------AMGLVHGRD--RLCLVQLCDGDDNVSCVRIGLGQCEAPRLKALM 78

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
               V  V H + F+       LGI +      CT V +R      S K         E 
Sbjct: 79  EAAAVEKVFHFARFDVAALASGLGIAVDP--IFCTKVASR-LARTYSPK-----HGLKEV 130

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           + ++      +    +            +    A      Y   D        +RL  + 
Sbjct: 131 VLELV----GVELDKQAQSSDWGRVEELSEAQLA------YAANDARYLLPARERLEVML 180

Query: 182 DGE--RDLWLLDQTINDRGYRIDLDLVLK 208
             E   +L             +D     +
Sbjct: 181 RREGRWELAQRCFRCIPVMSELDRLRFAQ 209


>gi|109082314|ref|XP_001092360.1| PREDICTED: DNA polymerase subunit gamma-1 [Macaca mulatta]
          Length = 1228

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 89/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 830  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 888

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   KV      Y  G 
Sbjct: 889  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKVFNYGRIYGAGQ 948

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 949  PFAERLLMQFNHRLTQQEAAEKAQQMYAITKGLRWYRLSDEGE---------WLVRELHL 999

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E      ++   + A R             +   I     
Sbjct: 1000 PVDRTEGGWISLQDLRKVQREAARKSHRKKWEVIAERAWK-GGTESEMFNKLESIATSDI 1058

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
             R      +   +   +A                 +VQ+ + D   ++   MK   +   
Sbjct: 1059 PRTPVLGCRISRALEPSAVQGEFMTSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1113

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1114 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1152


>gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
 gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
          Length = 207

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 36/207 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET     +             + +   +  +    L      S   + +L   L 
Sbjct: 20  VAVDTETMGLVTIRD----------RLCVVQISDGNGDEHLVRFGPDSDYDAPNLKAVLG 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
           D   + + H + F+    +  LG+        CT + +   RT      LKN    L   
Sbjct: 70  DPERLKLFHFARFDLAAIEYYLGVTAAPC--YCTKIASKMVRTFTDRHGLKNLVEEL--- 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L     K    S        +  +       Y   DV     + + L  
Sbjct: 125 -----------LGESMSKAQQSSDWGGPVLNDAQRD------YAASDVRFLHRMKEELDR 167

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLV 206
             + E    L     +    R  LD++
Sbjct: 168 RLEREGRTELAQACFDFLPARAHLDIL 194


>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 364

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 24/109 (22%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           L +   D+ ++ + H++  +  + K+    ++       T + A   G 
Sbjct: 63  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGF 109


>gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814]
 gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814]
          Length = 233

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 34/149 (22%)

Query: 1   MSKLFIDIETRSP----------------QPLPKVG--------VWAYAEQAVITLCAYA 36
           M ++  D ET                     L   G              +  I +    
Sbjct: 1   MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPERQVSEDTIRITGIT 60

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKR 92
            +    K        ++  + L ++ D     VAHN+ F+R       ++  G D P +R
Sbjct: 61  DEMLKGK--PVFSDPSVYKEFLDFIEDS--PLVAHNAEFDRGFLNEEMRRVGGPDFPKER 116

Query: 93  WICTSVLAR--TNGLPSSLKNACLALNFS 119
            + T  LAR    G  ++L   C   + S
Sbjct: 117 CVDTLALAREKFPGASATLDALCKRFDIS 145


>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 366

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 96/316 (30%), Gaps = 39/316 (12%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  E     S 
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQIATEN-EIFLIDTLEDLDF-SK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114
           L     D  +  + H++  +  + K+    D        T + A   G     SLK    
Sbjct: 63  LKDIFEDTNIQKIIHSATNDIPIIKRFF--DCEVNNIFDTQLAASFLGTQSQISLKALLK 120

Query: 115 -ALNFSEHL---TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             L+              + L  +    ++    +      H+++     +Y +   E  
Sbjct: 121 DILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYEEL 180

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            E+ K      +   +     Q  +++  + +  LV + +E +AQ++      I      
Sbjct: 181 LEIQKTEFNTVENIHNKIGNIQKFSEKTQK-NAILVAQWRESMAQQKNIPVRFIFDNKIL 239

Query: 231 IIRSSRQTYALRMYLFLITG--IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
              + +   +L  +           +  S  T+ +   +         + L + + +  +
Sbjct: 240 YAIAHKNPKSLNSFDTEELKKLKPWIKKSIITVINSKQNLEH------INLEQKSGAKIS 293

Query: 289 ILKLNTLSEAVSSDGR 304
               + ++     + R
Sbjct: 294 TEINDKITNFFDIETR 309


>gi|289705267|ref|ZP_06501666.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289558017|gb|EFD51309.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 578

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 84/358 (23%), Gaps = 67/358 (18%)

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224
            RL  L+  E    L+   I   G   D  +   L                  + L E I
Sbjct: 163 HRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLTEQLGPRPAQGERPARLQALAERI 222

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNITQLAKDLILN 280
             +      S     +L   L    G+ +    +  LK  +                +L 
Sbjct: 223 ADVLGSPGLSPDSQPSLLRAL-QTAGVAVESTRQWDLKHWIDAGGAQREARAALLAPLLE 281

Query: 281 RLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
             A +           +  +  DGR        G   TGRW+        +P        
Sbjct: 282 YKALARLWTANGWHWLDQWIGDDGRFHAAY-LVGGVVTGRWAAHGGGAMQVPAG------ 334

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
                                   VR  + A  G  L VAD + +E R+LA +A ++   
Sbjct: 335 ------------------------VRDAVRADPGWTLTVADASQVEPRILAAMAADEALA 370

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
           +A    +                  +   R   K+  L   Y         +        
Sbjct: 371 RAGTTPDLYREVAEQG----RAAGTALADRGRAKIALLGAMYGSTTGDSAAL-------- 418

Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
                          + +A                    +G       + W+     V
Sbjct: 419 --------MPHLRRLYPRAIGLLERAASVGEGGGQVSTWLGRWSPAPGRKWQESVSDV 468



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 594 GGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647
           G      +VQ  + +     M    +     G    +V  VHDE+V   P T   +V T+
Sbjct: 485 GRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPATEAEAVRTV 544

Query: 648 C 648
            
Sbjct: 545 V 545


>gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
 gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
          Length = 203

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + L   +  D    L   +       +L + L D
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCLIQLSSGDGNCHLIQISVGQTTAPNLCKVLAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNA 112
             V+ + H   F+        G         CT + ++          LKN 
Sbjct: 70  PQVLKLFHFGRFDIAAMLNAFGTVTAP--VYCTKIASKLIRTYTDRHGLKNL 119


>gi|296123324|ref|YP_003631102.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296015664|gb|ADG68903.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 686

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 25/152 (16%)

Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588
              V E       R+    + V         +  P  R +  ++ + D +          
Sbjct: 541 KTSVAEAIQRLFPRLMTWRQSVAAEALSSGFVTTPLGRVIDLTEGQDDLNRQRQ------ 594

Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG 645
                      N++QA + ++  + +    +    G  I+L +HD ++ +       +V 
Sbjct: 595 --------AVNNLIQAHAAELFKQALIAMDQRLPPGARILLPMHDGVLVDCLTHQLDAVA 646

Query: 646 T-LCSLM---TKNPSWAKGLPLKAEGYEAKRY 673
             + + M   +        +PL+      + +
Sbjct: 647 RGIRAAMTGFSNPMP----VPLQVVIETGQNW 674



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 63/257 (24%), Gaps = 29/257 (11%)

Query: 311 FYGASRTGRWSGCVFQ---------PQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            +G     RW+                  P   R    L+Q      R            
Sbjct: 391 QHGLLLDERWNPSSTNDLPELKRMRLSAAPTGGRLRTRLSQNRSRTGRITASQYSCQSIP 450

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT-YAKAFNTP 420
             +R  ++   G+ L+ AD    E RV A ++ +   +  F + +        ++  +  
Sbjct: 451 LRLRPAVVVGEGRTLISADYRAFEWRVAAALSQDSQLLTDFGSPDFDLYAFLVSQFDDLK 510

Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
            D  S      G    +   Y      F    +                     + +  +
Sbjct: 511 HDVSSARPIIKGD--SIQALYD-----FIDDGTASDGKTSVAEAIQ------RLFPRLMT 557

Query: 481 HHLWMQDQYPEFAVKDKLIGT-----ACELVKKAWRAKHQG-VLQLWKDLTEGFACVVQE 534
               +  +          +G        +      R      +     +L +     + +
Sbjct: 558 WRQSVAAEALSSGFVTTPLGRVIDLTEGQDDLNRQRQAVNNLIQAHAAELFKQALIAMDQ 617

Query: 535 GGSISARRVANVPRLVM 551
                AR +  +   V+
Sbjct: 618 RLPPGARILLPMHDGVL 634


>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
 gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
          Length = 1069

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              Y    ++ L   +  ++   +            L +  
Sbjct: 450 KEIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 499

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFS 119
            D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK      + F 
Sbjct: 500 ADPSIIKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASALQLPKKSLKFLLHEYVGFD 557

Query: 120 EHLT 123
               
Sbjct: 558 ADKQ 561


>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
          Length = 451

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D+E  S + L       Y    +  L   + D+    + D          L     
Sbjct: 140 QIAVDVEHHSYRDLS----GLYLILGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFT 195

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LALNFSE 120
           D   + V H +  + +  ++  G+ +       T   A++ GLP+ SLK           
Sbjct: 196 DPKKLKVFHGADSDVLWLQRDFGVYL--VGLFDTYHAAKSLGLPALSLKFLLMKYCGVDT 253

Query: 121 HL 122
             
Sbjct: 254 DK 255


>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++  D ET    P          E   + L  +              +  MP      
Sbjct: 1   MREIAFDTETTGLDPRNG---DRLVEIGGVELFNH-VPTGNTYHVYINPERDMPEAAFNV 56

Query: 58  ----LQYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                ++L D+                   V HN+ F+         +   + IP  + +
Sbjct: 57  HGLSAEFLADKPVFAEIVDEFLAFVGDARLVIHNAAFDMGFINMELSRAGRLPIPRTQVL 116

Query: 95  CTSVLARTNGL--PSSLKNACLALNFS 119
            T  LAR      P+SL   C      
Sbjct: 117 DTLELARRKHPMGPNSLDALCGRYGID 143


>gi|291335762|gb|ADD95365.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 237

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 40/175 (22%)

Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351
           +N  ++ V+ +GR+        ++ T R +        +P                    
Sbjct: 55  VNAWNKLVTGEGRIHHHCS--VSTNTFRCAHRKPNLAQVP-------------------- 92

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
                   AS+  R    AS G  +V ADL+GIE R+LA   G       +  G    + 
Sbjct: 93  --------ASEEFRELFTASPGMVMVGADLSGIELRMLAHYLG------RYDGGRYADIL 138

Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
                     DK+    R   K +  A  Y  G +      +     LQ      
Sbjct: 139 LNDDIHQVNADKI-GITRRQVKTVTYAFLYGAGNEKL---GTSYDNSLQPKEAKK 189


>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
           bacterium]
          Length = 386

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 22/159 (13%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L      +    +         P  LL+ L+D T + V H +  +  +  +  G  IP  
Sbjct: 40  LIQVGGGEHFAAIDPIALPDMTP--LLELLKDPTKVKVFHAARQDLEILVRFCGQVIPP- 96

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T + A   G              ++        KAL  +  K    +       ++
Sbjct: 97  -IFDTQIAAALVGWG------------TQISFAKIVYKALGKKIHKSETYTDWCRRPLSD 143

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                    EY   DV     ++ +LI        L  +
Sbjct: 144 SQI------EYAIDDVRYLMPVYNKLIERLKKMGRLDWV 176


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQP----------------LPKVGVWAYAEQAVITLCAYAWDDEPVKL 44
           M ++  D ET    P                 P      Y         +   D + V  
Sbjct: 1   MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQ--GRSVHPDAQAVHG 58

Query: 45  W---DRTEQS---AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
               D   +     +  + L+++  +    VAHN+ F+       F++     I   R I
Sbjct: 59  ISDADLAGKPVFAEILDEFLEFI--DGAKLVAHNANFDIGFINAEFQRVGQPYIDPARVI 116

Query: 95  CTSVLARTNGL--PSSLKNACLALNFS 119
            T  +AR      P+SL   C      
Sbjct: 117 DTLAIARRKHPMGPNSLDALCRRYGID 143


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/390 (13%), Positives = 98/390 (25%), Gaps = 83/390 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVIT---LCAYAWDDEPV-KLWDRTEQSAMPSDLLQ 59
           L +D ET     +   G  A A         L    W    +  + D       P ++  
Sbjct: 32  LAMDYETY--ADVETWGPQASALDPHTLVARLLQINWPGNAIPYVIDLRALDW-PIEIRD 88

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
              D +V  V  N+ FE ++ + T G+        C  VL +  G  +  K       + 
Sbjct: 89  IWLDSSVRKVCFNARFEALVTQATWGVW--PDNLYCAMVLFQQIGAATGFKA-GRTRGY- 144

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV---------EAT 170
                      L     K    S           +      +Y   DV            
Sbjct: 145 --SYGSLVRDILDTPLNKELASSDWSG-------ELTPAQLQYAALDVGAPRNSNYTSLL 195

Query: 171 RELFKRLIPLSDGERDLWLL----------DQTINDRGYRIDLDLV-----LKLQELIAQ 215
            E +  L        ++  +             +   G  I+++++         EL   
Sbjct: 196 LEAYALLRNELLYTYEMPQVEEIDQAAFMEIARMEWNGLPINMNVMGSFLSTAQSELDNY 255

Query: 216 ERKKLDEDIVKLTDGIIRS-----------------SRQTYALRMYLFLITGIDLVDMSE 258
           + +        +   +  +                      AL   +     + L ++ +
Sbjct: 256 KLRMSAHFDFSVDQVVDWNSGVPQVTLVVPDKITALLNNPTALVSRIQEFLPVKLDNLQQ 315

Query: 259 GTLKSILSHS-------------------NITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            TL+++L                      ++       +L     +         L    
Sbjct: 316 KTLETVLRELDSEDDGDGEDGATSEESIRDLGIQVISDLLRYKKLTKMVSTNWAALINPR 375

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329
              G +    Q  G + TGR S       N
Sbjct: 376 --TGNVHARYQTIG-TSTGRMSSSSSGDTN 402


>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435]
          Length = 717

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 29/171 (16%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D+E     T                   + L   +  ++   + D  +       L 
Sbjct: 234 IAVDLEHHDLRTYYGL---------------VCLMQISTRNQD-YIVDTLKLRFKLQPLN 277

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALN 117
           +   D +++ V H +  + I  ++ LG+ +       T   ++  G P  SL        
Sbjct: 278 KVFTDPSIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTFHASKLLGFPKHSLAYLLETYA 335

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
             +   K       +A +    +  P     R++      +F +     +E
Sbjct: 336 KFKTSKKY-----QLADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIE 381


>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
          Length = 399

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 38/175 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  +       
Sbjct: 46  SQIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KK 88

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114
           L +   D+ ++ + H++  +  + K+    ++       T + A   G    SSLK    
Sbjct: 89  LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTL-- 144

Query: 115 ALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                E L    E +          +    +      +   V+      EY ++ 
Sbjct: 145 ---LKEIL--DIEIEKESQFSDWRNRPLTQNQLNYAIK--DVEYLIQLKEYLQQQ 192


>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
 gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
          Length = 394

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 33/245 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGI 86
             + +   A   E V + D   +    + L + L D  V  V H +  +  I   +    
Sbjct: 48  PELCVVQLA-GAEDVAVIDAQAEGLDLAPLGELLADPKVTKVFHAARQDVEICILR---F 103

Query: 87  DIPSKRWICTSVLARTNGLP--SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
             P +    T + A   G    +S  +   AL                            
Sbjct: 104 GAPPRPLFDTQIAAMVAGFGDQASYDSLVRAL---------------------AGAQIDK 142

Query: 145 YDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND----RGY 199
                    +        Y   DV   R ++  L+     E  L  + + + +      Y
Sbjct: 143 AHRFSDWAARPLSPAQINYAAADVTHLRRVYTALVERLTQEGRLSWVAEEMAELTDPATY 202

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           R D +   +  +  +  R+ L             + R     +  +   T +++   S  
Sbjct: 203 RQDPETAWERLKPRSSNRRFLAAVQALAAWREREAQRVNIPRQRLVRDETLMEIAATSPS 262

Query: 260 TLKSI 264
           T   +
Sbjct: 263 TAAEL 267


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDE---PVKLWDRT--- 48
            +  D ET    P     +   A    I               D +   P +        
Sbjct: 509 YVVFDTETTGLSPSAGDEIVQIAA-VRIVGGRILTGETFNMLVDPKRPIPPESIPFHGIT 567

Query: 49  ----EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
                       +L   R      + VAHN+ F+    K   +  G+       + T +L
Sbjct: 568 DAMVAGKPTIDTVLPQFRSFVSGAVLVAHNAAFDLKFLKMKERAAGVTFD-CPVLDTMLL 626

Query: 100 ARTN---GLPSSLKNACLALNF 118
           +R         +L      L  
Sbjct: 627 SRMLLGNDGDHTLDGIAQRLGI 648


>gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
 gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
          Length = 215

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 43/221 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           L +D ET        +G+  + +   + +   +       L   +  S   + +L   L 
Sbjct: 25  LAVDTET--------MGLITHRD--RLCVVQISDGSGDEHLVRFSPGSDYEAPNLSAILA 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           DE+ + + H + F+    +  LG+        CT + ++          LKN    L   
Sbjct: 75  DESRVKLYHFARFDLAAIQYYLGVVAAP--VFCTKIASKLVRTYTDRHGLKNLTDELLGE 132

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                            K    S        +  +      EY   DV     L   LI 
Sbjct: 133 SIS--------------KQQQSSDWGGPELNDAQR------EYAASDVRYLHRLRDELIV 172

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             + E         +       D        ++   + + +
Sbjct: 173 RLEREGR-------MEIAQACFDFLPTRAALDIAGWDGRDI 206


>gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 213

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 58/190 (30%), Gaps = 20/190 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L +D E         +G+    +   + L     +            ++   ++ +  
Sbjct: 29  SYLAVDTE--------AMGLIHGRD--RLCLIQICNELNLTACIKIELNNSDSPNIKKLF 78

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118
            D+ +M + H + F+    +    ++I ++   CT + ++          LK+    L  
Sbjct: 79  EDKNIMKIFHYARFDVAALR--CNLEINTRNIFCTKIASKLARTYTNKHGLKDLINEL-- 134

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEATRELFKRL 177
                ++++            + +   D    +     +         D E   EL ++ 
Sbjct: 135 --LEVELDKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLILDREGRYELAQKC 192

Query: 178 IPLSDGERDL 187
                   +L
Sbjct: 193 FKTIPVHSEL 202


>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
 gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
          Length = 380

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 91/306 (29%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLS 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ V H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 189 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 248 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRVSSNDYPKPIER 306

Query: 299 VSSDGR 304
           +S D R
Sbjct: 307 ISEDPR 312


>gi|297463314|ref|XP_002702642.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|297487953|ref|XP_002696610.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|296475559|gb|DAA17674.1| polymerase (DNA directed), gamma [Bos taurus]
          Length = 1223

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 103/397 (25%), Gaps = 44/397 (11%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    +    R G           LP
Sbjct: 777  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-ANYDEEGRYGAI---------LP 826

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + A 
Sbjct: 827  QVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIAAV 885

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   K++     Y  G   
Sbjct: 886  LGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIINYGRIYGAGQPF 945

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    + L  + +          +    +L  
Sbjct: 946  AERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGE---------WLVKELDLPV 996

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
            +        +  L K   E       +   + A+R   +         +   I      R
Sbjct: 997  ERTEDGWVSLKDLRKIQREASKKSRWKKWEVVAQRAW-MGGTESEMFNKLESIATSDIPR 1055

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN---G 621
                  +   +    A                 +VQ+ + D   ++   MK   +     
Sbjct: 1056 TPVLGCRISRALEPCAVRGEFMTSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFAID 1110

Query: 622  YDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                +++HDE+     +   +           L   M
Sbjct: 1111 GRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1147



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 47/227 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSE 120
             + V HN  F+R   ++   I     R++ T  +            SL  A        
Sbjct: 247 ERLVVGHNVSFDRAHIREQYLIQGSHMRFLDTMSMHMAISGLSSFQRSLWMAAKQGKHKA 306

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--------------------------- 153
                   K+               D +  N++                           
Sbjct: 307 RPPTQRGQKSQSKANGPPISSWDWLDISSVNNLADVHGLYVGGPRLEKEPRELFVKGNMK 366

Query: 154 ---QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL-- 205
              + +Q   +YC +D  AT E+F++ +PL        +    + + G     ++ +   
Sbjct: 367 DIRENFQDLMQYCAQDAWATYEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWER 426

Query: 206 --------VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
                     +LQ  + +    L  D  +L  G             +
Sbjct: 427 YLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLWDLEW 473


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 42/168 (25%)

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQ 442
           + RV+A +A E W+ + F NG DIY T+ ++ F+ P++K   +   R  GK+ +LALGY 
Sbjct: 33  DNRVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYG 92

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           G     K M                                         A++  L    
Sbjct: 93  GSVGALKAMG----------------------------------------ALEMGLTEDE 112

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
            + +  AWR  +  ++ LW D        ++   S ++  +     L 
Sbjct: 113 LQPLVDAWRQSNPNIVALWWDFDTAIKNAIKMHCSTASHSLNYCSNLS 160


>gi|323145829|gb|ADX32070.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146015|gb|ADX32255.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 305

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 62/224 (27%), Gaps = 39/224 (17%)

Query: 2   SKLFIDIET------RSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDR---- 47
             L +DIET         +    VG     ++  +   +  W         KL D     
Sbjct: 49  KVLILDIETAPAIGYYWSRWKTTVGQNQVLQEGYLLTFSAKWLGSDDILECKLPDFDLYN 108

Query: 48  ---TEQSAMPSDLLQYLRDETVMCVAHNS-LFERI----LFKKTLGIDIPSKRWICTS-V 98
                   +   L+  L  E    VAHN   F+         K   +     + I T  +
Sbjct: 109 TEPKNDRELLKVLVGLLE-EADFVVAHNGRKFDLPTINAHLVKHDIMPPSPYKIIDTCDI 167

Query: 99  LARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
             +    PS SLK+  + L           G  L             +        +AW 
Sbjct: 168 AKKVFKFPSNSLKSLAIFLKCQHDKL-DTGGFEL-------------WARVMDGDPEAWD 213

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              EY   DV    E++ +L    +    L  L          +
Sbjct: 214 HMMEYNVFDVIVLEEVYLKLRAWYNTHPSLSALIPQKVTPLCPV 257


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 30/155 (19%)

Query: 6   IDIETRSPQP-----LPKVGVWAYA-------EQAV--------ITLCAYAWDD-EPVKL 44
            D ET    P     +  +G            E           I+L +      +PV L
Sbjct: 425 FDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQPVLL 484

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D+     +     ++ RD   + V HN  F+    +   K LG+    +  + T +LA 
Sbjct: 485 QDKPPIEEVLPRFYRFARD--TVLVGHNVAFDLKFIRQKEKALGLRFD-QPVLDTMLLAA 541

Query: 102 TNGL---PSSLKNACLALNFSEHLTKMEEGKALIA 133
                     L     A            G ALI 
Sbjct: 542 VVDPERQHYGLDELAAAFGIEPVGRHSALGDALIT 576


>gi|213029602|ref|ZP_03344049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 79

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/113 (10%), Positives = 23/113 (20%), Gaps = 35/113 (30%)

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
              +  ++ GVL+  +                                           R
Sbjct: 1   MDLYFERYPGVLEYMERTRAQAKEQGYVETLE--------------------------GR 34

Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619
           RL   D+K   +       +               +Q  + DI+   M     
Sbjct: 35  RLYLPDIKSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDA 78



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 11/45 (24%)

Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512
               FE +     +    + Q  E    + L G    L       
Sbjct: 1   MDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSN 45


>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
 gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
          Length = 399

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 92/306 (30%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 52  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLA 98

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 156

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G  L     +   D              W L   Y   + E  +  +++ + 
Sbjct: 157 IDK-----GATLTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 207

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 208 DDCELALAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAKWRQNVAIERDLAL-SY 266

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 267 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRVSPNDYPKPIER 325

Query: 299 VSSDGR 304
           +S D R
Sbjct: 326 ISEDPR 331


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET               E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDNKA----DRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAV 56

Query: 49  ------------EQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                         + +  ++L +        +AHN+ F+       F +     I    
Sbjct: 57  HGITDESLKDKPPFADVADEILAFFE--GAKWIAHNATFDMGFVNAEFNRLGRPPILPDM 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            I T  +AR      P+SL   C      
Sbjct: 115 VIDTLAMARRKHPMGPNSLDALCRRYGID 143


>gi|29838472|gb|AAO93094.1| DNA polymerase [Bacillus phage Bastille]
          Length = 279

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 64/240 (26%), Gaps = 56/240 (23%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           LI   + E+D               D D      + I + R KL ++     +    +  
Sbjct: 67  LIKQVEEEKDALYALAVEEMLKAPKDRD------KEILKLRNKLKDE-----EDRFFNPN 115

Query: 237 QTYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSNIT 271
            +   +  ++ + GI L                             +   + I  +    
Sbjct: 116 SSEDKQKAMYKLGGIVLPFNREYLVDSAVENNLEEHEIEWYHYKADKHAFEYISENYPEH 175

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +   DL L                   V     L G+    G + T R S      QNLP
Sbjct: 176 KELADLFLEFSLVKTRKQSFTYKFLTMVDHHDILHGSFNSEG-TETSRLSSAAPNLQNLP 234

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390
           R+                              ++   +    G  L+  D + +E+RV+A
Sbjct: 235 RKT------------------GDVFRFDYQHPIKRAFVTRFEGGALIQLDYSSLESRVMA 276


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 59/207 (28%), Gaps = 26/207 (12%)

Query: 6   IDIETRSPQPLP-----KVGVWAYAEQAVI-------------TLCAYAWDDEPVKLWDR 47
           +D ET    P       ++G+   A    +                 +      V+L   
Sbjct: 20  VDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIRVHRDIGAQWIHHISAVELIHA 79

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKR--WICTSVLART 102
            E   +  +L   L     + VAHN  F+        + LG DIP      +CT  L+R+
Sbjct: 80  PEFEGIARELRDLLA--GRVFVAHNVAFDSKFLLSEYRRLGADIPVNSHTMLCTMKLSRS 137

Query: 103 NGLPSSLKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                SL + C       E            A      +D+ P        + A +  GE
Sbjct: 138 LIGVGSLADCCREFGIDNEDAHSALSDAHATALLLGRLMDADPKWSGWRRRLDAAEEAGE 197

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLW 188
           +        R  +       +      
Sbjct: 198 HWPELKSLERREWLPRRSHVENNLQCM 224


>gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1]
 gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1]
          Length = 367

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 48/309 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV L D          
Sbjct: 22  KILVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLA-------K 64

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L +  ++ + H+   +  +F               + + A   G+           
Sbjct: 65  FWALLANPNIIKLVHSCSEDLEVFAHYG--QCQPVPLFDSQIAASLCGMGHG-------- 114

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G +       T        +    Y   DV    +L+ +
Sbjct: 115 ----------VGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQ 164

Query: 177 LIPLSDGERDL-WLLDQTINDRGYRIDLDLVL----KLQELIAQERKKLDEDIVKLTDGI 231
           L      +  L WL ++ +     R+D   +     K++        +L    V     +
Sbjct: 165 LEAKLVAQGRLNWLYEEGVRMTEGRLDTPDLNTAYLKVKNAFQLTEIQLAYLKVLAKWRL 224

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
            ++  +  AL   +     I L      ++  +L   N     +  I  +        + 
Sbjct: 225 EKALARDLALGFVIKDHGLIALAKKQPKSMTELLK-LNDLTEQEKRIHGKEILRVMQTVD 283

Query: 292 LNTLSEAVS 300
           L  L E V 
Sbjct: 284 LVNLPELVD 292


>gi|163841492|ref|YP_001625897.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954968|gb|ABY24483.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 157

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 38/144 (26%), Gaps = 29/144 (20%)

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
             +   + L   +        + G  +S     + P               PS R L   
Sbjct: 3   RTYPRAVAL---VENAA-RAGERGEIVSTFLGRSSPP--------------PSERWLAAQ 44

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDI 624
               +            R    G      +VQ  + +     +    +          ++
Sbjct: 45  RSTTEQEQHWADNLARSR----GRFTRNFVVQGSAAEWASCWLAELRRRLRAQPGLNAEM 100

Query: 625 VLTVHDEIVSETPDTPYFSVGTLC 648
           V  +HDE++   P++    V  L 
Sbjct: 101 VFFLHDEVMVHCPESAVEQVSALI 124


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 26/145 (17%)

Query: 1   MSKLFIDIETRSPQ-------PLPKVGVWAYAEQAVITLCAYAWDDEPV----------- 42
           M K+  DIET            +  V +  Y++         + D + V           
Sbjct: 6   MRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALKLHGIT 65

Query: 43  --KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
              L D+   SA+  +   +  D+    +AHN+ F+        ++     +   R + T
Sbjct: 66  DEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIVDT 125

Query: 97  SVLARTNGLPS--SLKNACLALNFS 119
             +AR     S   L + C     +
Sbjct: 126 LSIARRKHPSSRNDLNSLCKRYGIT 150


>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 826

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E           V +Y    ++ L   +  D+   +            L +   
Sbjct: 249 EIAIDLE--------HHDVHSY--HGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFT 298

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ I       T   +     P  SLK      
Sbjct: 299 DPKILKVLHGSTMDIIWLQRDLGLYI--VGLFDTYHGSVALNYPKRSLKFLLEKF 351


>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
          Length = 827

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E           V +Y    ++ L   +  D+   +            L +   
Sbjct: 249 EIAIDLE--------HHDVHSY--HGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFT 298

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ I       T   +     P  SLK      
Sbjct: 299 DPKILKVLHGSTMDIIWLQRDLGLYI--VGLFDTYHGSVALNYPKRSLKFLLEKF 351


>gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 26/139 (18%)

Query: 6   IDIETRSPQP-----LPKVGVWAYA-------EQAV-ITLCAYAWDDEPVKLWDRTE--- 49
            D ET   +P     + ++G            E    +     A  +  V +   T    
Sbjct: 458 FDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQRAIPERTVAIHGITPAMV 517

Query: 50  -QSAMPSDLLQYL--RDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
                  ++L  L       + VAHN+ F+       ++  G+       + T +L++  
Sbjct: 518 AGQPTIREVLPALHAFAHDTVLVAHNAAFDLRFLELKERAAGVRFD-MPVLDTLLLSQVL 576

Query: 104 GL---PSSLKNACLALNFS 119
                  SL+     L   
Sbjct: 577 HPNQERHSLEAIAERLGVP 595


>gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel]
          Length = 389

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 48/194 (24%), Gaps = 30/194 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E      +     +       ++L   AW      + D        S L    
Sbjct: 25  KFIAVDTE-----FIRNCNEYY----PRLSLIQIAWSKGK-CVIDVLADDIDLSVLESIF 74

Query: 62  RDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            ++ ++ + H+   +   L  K   I         + + A            C   + + 
Sbjct: 75  YNKEIVKIFHDCKQDIDALLTKFPRI---PYPIFDSQIAAMF----------CAYYDNAV 121

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             +K+                             +      Y   DV    EL++ L   
Sbjct: 122 GYSKLVA-----QFLDVSLDKLTLKRSNWLMRPLSDDKIQ-YALDDVVYLYELYQVLYDN 175

Query: 181 SDGERDLWLLDQTI 194
               + L    + +
Sbjct: 176 LISSKRLLWFLEEM 189


>gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32]
 gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32]
          Length = 367

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 48/309 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV L D          
Sbjct: 22  KILVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLA-------K 64

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L +  ++ + H+   +  +F               + + A   G+           
Sbjct: 65  FWALLANPNIIKLVHSCSEDLEVFAHYG--QCQPVPLFDSQIAASLCGMGHG-------- 114

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G +       T        +    Y   DV    +L+ +
Sbjct: 115 ----------VGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQ 164

Query: 177 LIPLSDGERDL-WLLDQTINDRGYRIDLDLVL----KLQELIAQERKKLDEDIVKLTDGI 231
           L      +  L WL ++ +     R+D   +     K++        +L    V     +
Sbjct: 165 LEAKLVAQGRLNWLYEEGVRMTEGRLDTPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRL 224

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
            ++  +  AL   +     I L      ++  +L   N     +  I  +        + 
Sbjct: 225 EKALARDLALGFVIKDHGLIALAKKQPKSMTELLK-LNDLTEQEKRIHGKEILRVMQTVD 283

Query: 292 LNTLSEAVS 300
           L  L E V 
Sbjct: 284 LVNLPELVD 292


>gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155]
 gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155]
          Length = 369

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 76/315 (24%), Gaps = 60/315 (19%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV L D          
Sbjct: 24  KILVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLA-------Q 66

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D  ++ + H+   +  +F               + + A   G+           
Sbjct: 67  FWALLSDPNIVKLVHSCSEDLEVFAHYG--KCQPTPLFDSQIAASLCGMGHG-------- 116

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G +       T        +    Y   DV    +L+ +
Sbjct: 117 ----------VGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQ 166

Query: 177 LIPLSDGERDLWLLDQTINDRGYR------IDLDLVL-----KLQELIAQERKKLDEDIV 225
           L      +  L  L +              +D   +      +L E+     K L +  +
Sbjct: 167 LEAKLSAQGRLAWLYEEGERMTLGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRL 226

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285
           +       +          +           S       L   N     +  I  +    
Sbjct: 227 EKALVRDLALGFVVKDHGLI--ALAKKQPKSSAD-----LFKLNDLTEQEKRIHGKDLLR 279

Query: 286 GSAILKLNTLSEAVS 300
                 L  L E V 
Sbjct: 280 VLQTADLVNLPELVD 294


>gi|327308500|ref|XP_003238941.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
 gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
          Length = 867

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              Y    ++ L   +  ++   +            L +  
Sbjct: 263 KEIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 312

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFS 119
            D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK      + F 
Sbjct: 313 ADPSIIKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASALQLPKKSLKFLLHEYVGFD 370

Query: 120 EHLT 123
               
Sbjct: 371 ADKQ 374


>gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4]
 gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4]
          Length = 210

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 40/205 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D ET         G+   A+   + L   +       L   +  +A    L   L 
Sbjct: 27  RIAVDTET--------SGLSWAAD--RLNLIQLSAQSVGGSLVRLSAGAAPL--LKDLLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSSLKNACLALN 117
              V+ + H + F+     + LG+   ++   CT   ++           SL+       
Sbjct: 75  SRDVVKIFHFAPFDLRFITQ-LGVA-QAQNIRCTKTASKLLDPQLDPKQHSLRAL----- 127

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        L+ +               +    +      Y   DV     L  +L
Sbjct: 128 -------------LLRKLGVEITKGEARTSDWSARSLSDSQIR-YALDDVAHLERLHSKL 173

Query: 178 IPLSDGERDLWLLDQTINDRGYRID 202
               + ER L  L + I D    ID
Sbjct: 174 EKELE-ERSLIELYRQICDY-IPID 196


>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
 gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
          Length = 881

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              Y    ++ L   +  ++   +            L +  
Sbjct: 266 KEIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 315

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFS 119
            D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK      + F 
Sbjct: 316 ADPSIIKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASALQLPKKSLKFLLHEYVGFD 373

Query: 120 EHLT 123
               
Sbjct: 374 ADKQ 377


>gi|73951465|ref|XP_545850.2| PREDICTED: similar to DNA polymerase gamma subunit 1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Canis
            familiaris]
          Length = 1234

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/404 (11%), Positives = 103/404 (25%), Gaps = 58/404 (14%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    +    R G           LP
Sbjct: 794  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-PDYDEEGRYGAI---------LP 843

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   +  I  + ++      + A P       +++ + A  G   V AD+   E  + A 
Sbjct: 844  QVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVFVGADVDSQELWIAAV 902

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   K+      Y  G   
Sbjct: 903  LGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQPF 962

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA----- 502
             + +       L +     K+   +   +    +   + ++      +  L         
Sbjct: 963  AERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRY--RLSEEGEWLVRELDLPVDRTEDGW 1020

Query: 503  --CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               + ++K  R   +     WK          + G             +        +  
Sbjct: 1021 VSLQDLRKIQREASR--KSRWKKWEVAAERAWRGGTESEMFNKLESIAMSDTPCTPVLGC 1078

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNA 617
             +   R L  S VKG+                        +VQ+ + D   ++   MK  
Sbjct: 1079 RIS--RALEPSAVKGEFMTSR----------------VNWVVQSSAVDYLHLMLVAMKWL 1120

Query: 618  TKN---GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
             +         +++HDE+     +   +           L   M
Sbjct: 1121 FEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1164


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 41/150 (27%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++  D ET    P          E   I L                       A+A  
Sbjct: 1   MREIIFDTETTGFDP---ASGDRMVEIGCIELVNRVPTGRTFHAYYHPERDMPAAAFAVH 57

Query: 39  DEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSK 91
                           A+  +LL +L D     VAHN+ F+       L +     +   
Sbjct: 58  GLSADFLAKHPVFSLGAL--ELLDFLEDS--PLVAHNARFDFGFLNHELTLCGHPQVGMH 113

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
           R I T  +AR    G   SL   C      
Sbjct: 114 RMIDTVAIARQLHPGAKHSLDALCTRYGID 143


>gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
 gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
          Length = 231

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETR-----SPQPLPKVG-VWAYAEQAVITLC-------------AYAWDD-E 40
           M ++ +D ET      S   + ++G V  Y                      A+A     
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQRAMPEAAFAVHGLG 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-DIPSKRWI---CT 96
              L D+   + +  + L +++D     V HN+ F+       LG   +P   W     T
Sbjct: 61  DDFLRDKPLFAEIAQEFLDFVQDAR--LVIHNAAFDMKFLNAELGWLKLPQLPWDQAVDT 118

Query: 97  SVLAR--TNGLPSSLKNACLALNFS 119
             +AR    G P+SL   C      
Sbjct: 119 LAIARKKFPGSPASLDALCRRFQID 143


>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 377

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 75/262 (28%), Gaps = 41/262 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +L +D+E  S      +            L   +  D+   + D          L +  
Sbjct: 93  KELGVDVE-YSDHGYKALT----------CLVQISTPDKD-YIIDAIALKDELHALNEVF 140

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSE 120
            +  ++ + H+++ +    ++ LG+ +       T +  +  G     L       + ++
Sbjct: 141 TNPDIVKIFHSAVNDLKWLQQDLGVFV--VNLFDTQIAMKALGYKKLGLDALLQDYHVAK 198

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                   K +  +  +                     F +Y + D       + +L   
Sbjct: 199 D-------KTMQRQDFRRRP--------------LPPKFKDYARVDSHYLIGFYHKLKNE 237

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY- 239
                 L  +    N+   +I    V    +      ++  E+I K    ++        
Sbjct: 238 LIEANLLRAVLDDCNN-CCKILYPKVE---DEAYLSVRRNVEEIHKRQLLVLEKLNSWRH 293

Query: 240 ALRMYLFLITGIDLVDMSEGTL 261
            +  YL    G  L   +  TL
Sbjct: 294 QIAQYLDKNVGCVLSKSNMETL 315


>gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
 gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
          Length = 228

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 47/148 (31%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET   +P          E   + L                       A+A  
Sbjct: 1   MREIVLDTETTGFEPSEG---DRIVEIGAVELIGHMPTGRTYHQYINPQRTMPAEAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
                 L D+     +  D L ++ D     V HN+ F+       LG      +P  R 
Sbjct: 58  GLGDDFLADKPLFKDIADDFLTFIGDA--KLVIHNAAFDMKFLNAELGWLHKPALPMNRA 115

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           + T ++AR    G P+SL   C      
Sbjct: 116 VDTLMIARRKFPGSPASLDALCRRFGID 143


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET               E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDNRA----DRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAV 56

Query: 49  ------------EQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                           +   +L +  D     +AHN+ F+         +     I  +R
Sbjct: 57  HGITDEFLKDKQPFGEVAEQILTFFGDA--KWIAHNATFDMGFINAELARIGLPPILPER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  +AR      P+SL   C      
Sbjct: 115 VLDTLSMARRKHPMGPNSLDALCRRYGID 143


>gi|145593082|ref|YP_001157379.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
 gi|145302419|gb|ABP53001.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
          Length = 261

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 40/200 (20%)

Query: 2   SKLFIDIETRSPQPLPKV--------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--- 50
             L+IDIET     L  V        G+        +   A+ W  E    +        
Sbjct: 14  RTLYIDIET--APSLAHVWGLWRQNIGLSQLLASGRVICLAWKWRGEEGVHFASEHGQGR 71

Query: 51  SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGI--DIPSKRWICTSVLARTNGLPS 107
            AM +   + L +  V+   +N   F+     +   +   +P   +       R   L  
Sbjct: 72  DAMLASAHRILGEADVVVH-YNGKRFDIPTLNRDFILAGKLPPAPF-------RQLDL-- 121

Query: 108 SLKNACLAL-----NFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            L+             +    ++  EGK               +    A   +AW+   E
Sbjct: 122 -LETVKRRFRFTSNKLAHISQELGLEGK-------VKHEGHTLWVRCLAGDPEAWEQMAE 173

Query: 162 YCKRDVEATRELFKRLIPLS 181
           Y +RDV    +L   L+P  
Sbjct: 174 YNRRDVTLLEQLHDVLMPWL 193


>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
          Length = 382

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 51/189 (26%), Gaps = 33/189 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            K+  D+E  S        +  + E   + L   A  +  + + D  +   + S L    
Sbjct: 29  KKIGFDLEADS--------MHHFPE--KVCLLQVATKN-CIFVIDTIKLKEL-SLLKPIF 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  +  + H + ++     +   I+I       + + +R              L   E 
Sbjct: 77  ADNEITKIFHGADYDVRSLFRDFNIEIN--NLFDSELASR-------------FLGVKET 121

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +            K             +          Y   DV     L++ L    
Sbjct: 122 GLEAVIRHRFNVYLEKKFTKRDWSKRPLIDD------MLHYAADDVRYLVPLYEILEKEL 175

Query: 182 DGERDLWLL 190
           +    L+ +
Sbjct: 176 NDIGRLFWV 184


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 35/157 (22%), Gaps = 63/157 (40%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D ET    P              +                      +P ++L  L D  
Sbjct: 279 FDTETTGLLPHKD----------EVVQIG---------AVRVLNGRIVPGEVLDLLVDPG 319

Query: 66  VMC-------------------------------------VAHNSLFERILFKKT---LG 85
           +                                       VAHN+ F+    ++    +G
Sbjct: 320 IPIPASSSRVHKVTDAMVAGKPDIGEAGRRFHRFAKGSVIVAHNAPFDMAFLRRHRDRMG 379

Query: 86  IDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
           ++      + T +L+          +L   C  L   
Sbjct: 380 VEWD-HPILDTVLLSAVLFGASETHTLDALCQRLGVE 415


>gi|148807575|gb|ABR13588.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 31/155 (20%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            ++++       DGR+ G +   GA  TGR +        +P                  
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143

Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
                          RS      G KL+  D  G+
Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDARGL 173


>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 786

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 36/192 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +  ++   + D        + L +  
Sbjct: 253 EIAVDLE-----------HHDYRSYYGIVCLMQISNREQDW-IIDTLALRDDLTVLNEVF 300

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            D  ++ V H +  + I  ++ LG+ +       T   +R  G P  SL          +
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTFHASRALGFPRFSLAYLLEVYAHFK 358

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              + +     I                             Y + D      ++ +L   
Sbjct: 359 TSKQYQLADWRIRPLSPP--------------------MLAYARSDTHFLLFIYDQLKNK 398

Query: 181 SDGERDLWLLDQ 192
                 L  +  
Sbjct: 399 LIDAEKLSQVLY 410


>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
 gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
          Length = 745

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 50/192 (26%), Gaps = 36/192 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            +L +D+E              Y     I      +   +   +     +  +   L   
Sbjct: 233 KELAVDLE-----------HHDYRSYYGIVCLMQISSRSKDWLVDTIALRDDL-HVLNVI 280

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             D TV+ V H +  + I  ++ LG+ +       T   +R  G P  SL          
Sbjct: 281 FTDPTVVKVFHGAFMDMIWLQRDLGLYV--VSLFDTYHASRALGFPKHSLAYLLE----- 333

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               K +  K               Y           +   +Y + D      ++  L  
Sbjct: 334 -TFAKFKTSKK--------------YQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRN 378

Query: 180 LSDGERDLWLLD 191
                  L  + 
Sbjct: 379 ALVKAGKLAEVL 390


>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 230

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 42/152 (27%), Gaps = 36/152 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P          E   I L                       A+   
Sbjct: 1   MREIVLDTETTGLDP---ATGDRLVEIGCIELINHMPSGNDLHLYVNPERDMPPEAFRVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYL-RDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 L D+   + +  + L ++  D     + HN+ F+         +     +P  R
Sbjct: 58  GLSEAFLADKPLFAEVVDEFLAFIGED---RLIIHNAAFDMKFLNAELARLKRPPLPMSR 114

Query: 93  WICT--SVLARTNGLPSSLKNACLALNFSEHL 122
            + T     AR  G  +SL   C         
Sbjct: 115 ALDTLRMAQARFPGAQASLDALCRRFGVDTSS 146


>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
          Length = 380

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 89/306 (29%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FIALLA 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR    G  + L       LN  
Sbjct: 80  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNVE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEKAVS 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 189 DDCELALAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAKWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                 L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 248 IVKSDNLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRISSNDYPKPIER 306

Query: 299 VSSDGR 304
           +S D R
Sbjct: 307 ISEDPR 312


>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
          Length = 424

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    D++   L D        
Sbjct: 61  YVTVDTEFLRERTYYS---------------KLCLIQMAVPSEDEDSAVLVDPLADGLSL 105

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +  ++E V+ V H +  +  +F    GI    K    T V A   G          
Sbjct: 106 DPLYELFQNEDVVKVFHAARQDLEIFWVEAGIF--PKPLFDTQVAAMVCGF-------GE 156

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ + CK  +D        +    +      Y   DV   R+++
Sbjct: 157 QVGYET----------LVRKICKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIY 205

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 206 EYLAAELEKTGRSRWV 221


>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 786

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 24/129 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           ++ +D+E     T                   + L   +  D+   + D        ++L
Sbjct: 253 EIAVDLEHHDFRTYYGI---------------VCLMQISNRDQDW-IIDTLALRDELTEL 296

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
            +   +  ++ V H +  + I  ++ LG+ I       T   +R  GL   SL       
Sbjct: 297 NEVFTNPNIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASRALGLSRFSLAYLLEHY 354

Query: 117 NFSEHLTKM 125
              +   K 
Sbjct: 355 AQFKTSKKY 363


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----- 50
           M ++  D ET    P     L ++G      +   T  ++     P +      +     
Sbjct: 1   MREIVFDTETTGLNPATGDRLVEIGCVELVNRVE-TGNSFHCYFNPQRSMPFEAEQVHGL 59

Query: 51  -SAMPSDLLQYLRDE---------TVMCVAHNSLFERILFKKTLGI----DIPSKRWICT 96
                SD      D+             VAHN+ F+       LG      +   R + T
Sbjct: 60  SERFLSD-KPLFADKVEELLAFIGDAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVDT 118

Query: 97  SVLARTN--GLPSSLKNACLALNFS 119
             +AR    G   SL   C      
Sbjct: 119 LQIARKMHPGAKHSLDALCSRYGID 143


>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
           Brener]
 gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 768

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 33/180 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E            ++Y  Q    L   +   E + L D  +  +    L    
Sbjct: 288 KEIAVDLE--------HHSFYSY--QGFTCLMQISTRSEDI-LIDCLKLRSSMHLLAPVF 336

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  +    +K  G+ +    +  T +  +T  +P  L            
Sbjct: 337 LNPNILKVLHGAREDIRWLQKDFGLYL--VNFFDTGIALQTLHMPHGLAF---------- 384

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                     +  FC+  +D               +    Y ++D      ++ RL  L 
Sbjct: 385 ---------AVDHFCQVKLDKKYQTADWRIRPIPAE-MATYARQDTHFLLYVYDRLKTLL 434


>gi|119355877|ref|YP_910521.1| DNA polymerase B region [Chlorobium phaeobacteroides DSM 266]
 gi|119353226|gb|ABL64097.1| DNA polymerase B region [Chlorobium phaeobacteroides DSM 266]
          Length = 796

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 62/236 (26%), Gaps = 64/236 (27%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLLQYL-- 61
           +DIET       + G         I + + + +    ++     +    +   L++ +  
Sbjct: 160 LDIETCYDPDKKRTGSG--IGDDEIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIA 217

Query: 62  RDETVMCVAHNS-LFERILFKK---------------------------------TLGID 87
           RD  V+   HN   F+    +K                                     +
Sbjct: 218 RDPDVIE-GHNIFSFDLPYIQKRCDRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFE 276

Query: 88  IPSKRWICTSVL------ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141
           IP +  I T  L      ++       LK       F+       E K +I+        
Sbjct: 277 IPGRHVIDTLFLVQGYDVSKRAMQSYGLKAVAKYFGFASPDRTYVEYKDIIS-------- 328

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197
                 T  N+         Y   DV  TR L   L   +     +      +  R
Sbjct: 329 ------TWENNPDK---LLAYALDDVRETRALASHLSGSNYYLSRMMPYTYAMTSR 375


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 38/155 (24%), Gaps = 42/155 (27%)

Query: 1   MSKLFIDIETRSPQP--------------------------LPKVGVWAYAEQAVITLCA 34
           M ++  D ET                               +   G   + E   +   +
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKKTLGI----DIP 89
            A         D   +        ++L        VAHN+ F+        G      + 
Sbjct: 61  AA---------DLAGKPTFAEIAEEWLTFTDGAKLVAHNATFDIGFLNVEFGRLGHPVVD 111

Query: 90  SKRWICTSVLARTNGL--PSSLKNACLALNFSEHL 122
             R + T  LAR      P+SL   C         
Sbjct: 112 PGRVVDTLALARRKHPMGPNSLDALCRRYGIDNTK 146


>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 786

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 36/192 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +  ++   + D        + L +  
Sbjct: 253 EIAVDLE-----------HHDYRSYYGIVCLMQISNREQDW-IIDTLALRDDLTVLNEVF 300

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            D  ++ V H +  + I  ++ LG+ +       T   +R  G P  SL          +
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTFHASRALGFPRFSLAYLLEVYAHFK 358

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              + +     I                             Y + D      ++ +L   
Sbjct: 359 TSKQYQLADWRIRPLSPP--------------------MLAYARSDTHFLLFIYDQLKNK 398

Query: 181 SDGERDLWLLDQ 192
                 L  +  
Sbjct: 399 LIDAEKLSQVLY 410


>gi|295659299|ref|XP_002790208.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 827

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E           V +Y    ++ L   +  ++   +            L +   
Sbjct: 249 EIAIDLE--------HHDVHSY--HGLVCLMQISTREQDWIVDTLKPWREELQVLNEVFT 298

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEH 121
           D  ++ V H S  + I  ++ LG+ I       T   +     P  SLK           
Sbjct: 299 DPKILKVLHGSTMDIIWLQRDLGLYI--VGLFDTYHGSVALNYPKRSLKFLLE------- 349

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             K    KA                           +F +Y + D      ++  +    
Sbjct: 350 --KFVNFKAEKKYQM----------ADWRLRPLLPGMF-DYARSDTHYLLYIYDHIRNSL 396

Query: 182 DG-------------ERDLWLLDQTINDRGYRIDL--------DLVLKLQELIAQERKKL 220
                          E+      Q      Y  +         D++++   L ++E+  +
Sbjct: 397 VENSTPAHNLVDYVLEKSRQEALQRYERPVYNAETGEGGGGWHDMLIRNSTLFSREQFAV 456

Query: 221 DEDIVKL 227
            + + + 
Sbjct: 457 FKAVHQW 463


>gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 204

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 35/127 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA------------------------VITLCAY- 35
           M  LF D ET S +P     +      A                         I   +  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFSLE 60

Query: 36  -AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSK 91
             ++    + +    +  +P     ++       + HN  F+    K     LG D   K
Sbjct: 61  KLYELSEGQYF----EDLVPEFFKDFIE--ADFLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 92  RWICTSV 98
              CT +
Sbjct: 115 HSFCTMI 121


>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 785

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 36/192 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +  ++   + D        + L +  
Sbjct: 253 EIAVDLE-----------HHDYRSYYGIVCLMQISNREQDW-IIDTLALRDDLTVLNEVF 300

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            D  ++ V H +  + I  ++ LG+ +       T   +R  G P  SL          +
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTFHASRALGFPRFSLAYLLEVYAHFK 358

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              + +     I                             Y + D      ++ +L   
Sbjct: 359 TSKQYQLADWRIRPLSPP--------------------MLAYARSDTHFLLFIYDQLKNK 398

Query: 181 SDGERDLWLLDQ 192
                 L  +  
Sbjct: 399 LIDAEKLSQVLY 410


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEIASEH 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 115 IVDTLALARRKHPMGPNSLDALCKRYGID 143


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 42/150 (28%), Gaps = 32/150 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------AYAWDDE-----PVKLW 45
           M ++ +D ET    P          E   + L            Y  + E          
Sbjct: 1   MREIVLDTETTGFDP---HSGDRIVEIGAVELFNHMPTGETYHQY-INPERSMPQEAFQV 56

Query: 46  -----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI-DIPSKRW---I 94
                D      +   + Q   D       + HN+ F+       LG   +P   W   I
Sbjct: 57  HGLGDDFLRDKPVFKRIGQAFLDFIGDAKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAI 116

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFSEHL 122
            T  +A  R  G P+SL   C   N     
Sbjct: 117 DTLEIARRRFPGSPASLDALCRRFNIDNSS 146


>gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303]
 gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303]
          Length = 212

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 15/116 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E         +G+    +   + L       + V              L + +  
Sbjct: 32  IAVDTE--------AMGLIHGRD--RLCLVQICDPADNVACVRIGLGQTSAPRLQKLMEA 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
            +V  V H + F+        G+ I      CT V +R          LK   + L
Sbjct: 82  TSVEKVFHFARFDVAALA--SGLGISVLPIFCTKVASRLARTYSPRHGLKEVVMEL 135


>gi|229472425|gb|ACQ72727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYANILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKETGSIRSIDGRK 144


>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
 gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
          Length = 380

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLS 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       LN  
Sbjct: 80  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFIGLGTSAGLAKLAQQYLNIE 137

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 138 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEQAVR 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 189 DDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLAL-SY 247

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++   + +   +        E 
Sbjct: 248 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLVQARRISSNDYPKPIER 306

Query: 299 VSSDGR 304
           +S D R
Sbjct: 307 ISEDPR 312


>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
 gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
          Length = 236

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 35/150 (23%), Gaps = 32/150 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++  D ET    PL         E   + L  +              Q  MP +    
Sbjct: 1   MREISFDTETTGLNPLDG---DRLVEIGGVELINF-IPTGRTCHLYVNPQRDMPEEAFRI 56

Query: 58  ----------LQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                          D              V HN+ F+         +     I + + +
Sbjct: 57  HGLSAEFLSDKPVFADVADEFLDFVGDARLVIHNAPFDMGFINMELARCNKPKISNTQVL 116

Query: 95  CTSVLARTNGLPS--SLKNACLALNFSEHL 122
            T  LAR        SL   C         
Sbjct: 117 DTLKLARRKFPTGSVSLDALCSRYGIDNSK 146


>gi|117530349|ref|YP_851192.1| DNA polymerase [Microcystis phage Ma-LMM01]
 gi|117165961|dbj|BAF36269.1| DNA polymerase [Microcystis phage Ma-LMM01]
          Length = 320

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/282 (8%), Positives = 67/282 (23%), Gaps = 52/282 (18%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R  + A  G   V  D +  E R+    + +    + +    +       +      + +
Sbjct: 9   RFALQAPPGYAWVSVDFSSQELRLAGAFSKDSAITEIY--VLEDKYHRGIRPLPLSPEGL 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
           +     + + +           + K +      +    S +    S +    +  +  + 
Sbjct: 67  TYTDPKVDQHLV------ASTFLNKDIERRMIHEPWTVSADDPVISPWRKKGKIMNFKVI 120

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                   A            + K +     G+                           
Sbjct: 121 YGGSASSLAADLNCDDKEAGRLLKQYFTGFHGLYTW------------------------ 156

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
               +      R   +     R +  ++         + T +         K   +++Q+
Sbjct: 157 --IEITGSLCSRTRWVRSAMGRFINVNEDNAKGIAGKSTTRR---------KAVNSVIQS 205

Query: 605 ISRDILCEGMKNAT---------KNGYDIVLTVHDEIVSETP 637
              ++L   +             +    I+   HDEI    P
Sbjct: 206 SGSEMLKISLPRVRQAIETIDAGERRASIINATHDEINLLVP 247


>gi|304389499|ref|ZP_07371462.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327309|gb|EFL94544.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 637

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 54/225 (24%), Gaps = 31/225 (13%)

Query: 75  FERILFKKTL---GIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEE 127
           ++    +  L   G ++         +L        +           L +       + 
Sbjct: 414 YDAKSLRHALHAHGWELHG-AVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDI 472

Query: 128 GK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---SD 182
            K    +       +D           +    ++  Y    ++ T E       +    +
Sbjct: 473 SKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYA-YALLQMQPTLEQLAHFRQVDGLLE 531

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  + + +   G  ID   + +  + +  E     +         + +      L+
Sbjct: 532 LENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREV-NLSSPKQLQ 590

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             LF    +      +                 D++L R      
Sbjct: 591 EVLFTQLELPKTKKPK----------------PDILLMRRLWKSL 619


>gi|301768381|ref|XP_002919612.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Ailuropoda melanoleuca]
          Length = 1227

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 103/400 (25%), Gaps = 50/400 (12%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    +    R G           LP
Sbjct: 787  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-PDYDEEGRYGAI---------LP 836

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + A 
Sbjct: 837  QVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIAAV 895

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   K+      Y  G   
Sbjct: 896  LGDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQPF 955

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    + L  + +          +     L  
Sbjct: 956  AERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGE---------WLVRELHLPV 1006

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                     +  L K   E       +   + A R              ++   L S   
Sbjct: 1007 DRTEDGWVSLQDLRKIQREASRKSRWKKWEVVAERAWMGGTES------EMFNKLES--- 1057

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKL---TENIVQAISRD---ILCEGMKNATKN- 620
            +  SD           +  L      G  +      +VQ+ + D   ++   MK   +  
Sbjct: 1058 IAMSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEF 1117

Query: 621  --GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                   +++HDE+     +   +           L   M
Sbjct: 1118 AIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1157


>gi|315656745|ref|ZP_07909632.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492700|gb|EFU82304.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 637

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 54/225 (24%), Gaps = 31/225 (13%)

Query: 75  FERILFKKTL---GIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEE 127
           ++    +  L   G ++         +L        +           L +       + 
Sbjct: 414 YDAKSLRHALHAHGWELHG-AVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDI 472

Query: 128 GK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---SD 182
            K    +       +D           +    ++  Y    ++ T E       +    +
Sbjct: 473 SKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYA-YALLQMQPTLEQLAHFRQVDGLLE 531

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            E  L  + + +   G  ID   + +  + +  E     +         + +      L+
Sbjct: 532 LENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREV-NLSSPKQLQ 590

Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
             LF    +      +                 D++L R      
Sbjct: 591 EVLFTQLELPKTKKPK----------------PDILLMRRLWKSL 619


>gi|238695626|ref|YP_002922653.1| P39 [Xanthomonas phage phiL7]
 gi|190343993|gb|ACE75779.1| P39 [Xanthomonas phage phiL7]
          Length = 282

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
             L IDIET              VG     +   +      W   P  ++D   +   P+
Sbjct: 25  KILHIDIETSQMIVWAWGLHKQFVGHEDIIQDWNVLSFCAKWQGVPTVIYDDLREQQNPT 84

Query: 56  D-------LLQYLRDETVMCVAHNS-LFERILFKKTLGID----IPSKRWICTSVLAR-T 102
                   L + L +  V  VAHN   F+    +  +  +    IP  R + T + +R  
Sbjct: 85  KDRRLCVALAKLLTEADV-VVAHNGKKFDLKKIRSRMAHNKLKPIPDTRIVDTLLESRKV 143

Query: 103 NGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            G     L                     L             +   +  ++ AW    +
Sbjct: 144 FGHTSHKLAYLTTHFGED----------GLRKLDHGKFAGKALWRECQTGNLAAWDEMRK 193

Query: 162 YCKRDVEATRELFKRLIPLSD 182
           Y   DV A   ++K L     
Sbjct: 194 YNIVDVLAMESMYKELRGWYQ 214


>gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
 gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 38/212 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           L +D ET          +     +  + +   +   E   L      S   + +L   L 
Sbjct: 21  LAVDTET----------MGLVTRRDRLCIVQISDGGEDEHLVRFAPDSDYAAPNLKALLA 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
           D   + + H + F+    +  LG+        CT + +   RT      LKN    L   
Sbjct: 71  DTNRVKLYHFARFDLAAIEHYLGVTAAP--VFCTKIASKLTRTYTDRHGLKNLVEEL--- 125

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                   G+ L     K    S           +       Y   DV     + + LI 
Sbjct: 126 -------LGENL----SKQQQSSDWGGADINEAQRD------YAASDVRYLHRMREILIT 168

Query: 180 LSDGE--RDLWLLDQTINDRGYRIDLDLVLKL 209
             + E   ++            R+DL    + 
Sbjct: 169 RLEREGRTEMAQACFDFLPTRARLDLAGWEEH 200


>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
 gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 34/195 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A       +  + +   +    L  LR
Sbjct: 22  FIAVDTE------FMRETTYW----PKLCLIQAATPTHEAIIDPQADGLDLTP-FLDILR 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFSEH 121
           D  ++ V H +  +  +F K   +    K    T V A   G            L     
Sbjct: 71  DPAIVKVFHAARQDTEIFVK---LGAMPKPMFDTQVAAMAAGFG---DQVAYDGLVRQML 124

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              +++G        +   D+                   Y   DV     L+ +L    
Sbjct: 125 KIDLDKGSRFTDWSRRPLSDAQL----------------TYAIGDVTHLAALYPKLRDRL 168

Query: 182 DGERDLWLLDQTIND 196
             E  L  +   + D
Sbjct: 169 AREGRLDWVTSEMED 183


>gi|116207922|ref|XP_001229770.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
 gi|88183851|gb|EAQ91319.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
          Length = 1082

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/420 (11%), Positives = 98/420 (23%), Gaps = 30/420 (7%)

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S       L++S    KM  GK         +    P        + A            
Sbjct: 466 SNDPWMKQLDWSGQEIKMVNGKKKGDPPRPAARQKLPGKPKWYKGLFATSTAPMNLTVRT 525

Query: 168 EAT---RELFKRLIPLSDGERDLWLLDQTINDRGYRIDL-----DLVLKLQELIAQERKK 219
             T     L     PL   ++  W       D     D      D   +  E + +++  
Sbjct: 526 RITPLLLRLAWDGYPLFWSDKHGWTFRVPRGDAKKYTDKLMEPCDFAEETIEALKEDKDH 585

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279
           +   +        R +       +  F    +          K  L  +         I 
Sbjct: 586 VYFKLPHKDGPTARCATPLAKSYLSYFEKGTL---SSEYSYAKEALEMNASCSYW---IS 639

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R       ++  + L                  A  +   +        +  Q      
Sbjct: 640 ARERIKSQLVVYQDQLPSTAGKS-----------AQTSEESTSGEPVGGFILPQIIPMGT 688

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +T+                     +++ + A  G   V AD+   E  + + I G+    
Sbjct: 689 ITRRAVENTWLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSEELWIASVI-GDSTFR 747

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               N          KA  T +   +       R   K+      Y  G K    +    
Sbjct: 748 IHGGNAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKIFNYGRIYGAGLKFAAQLLRQF 807

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
              L +      +T  +   +  +++   +  +       +  +    E   +    +  
Sbjct: 808 NPSLSETETLQIATKLYATTKGTKTNRRVLHKRTFWRGGTESFVFNKLEEFAEQEHPRTP 867


>gi|194860399|ref|XP_001969574.1| GG10182 [Drosophila erecta]
 gi|190661441|gb|EDV58633.1| GG10182 [Drosophila erecta]
          Length = 1142

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 72/273 (26%), Gaps = 31/273 (11%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSL 109
            +L+        + V HN  ++R   K+   I+    R++ T  L            + L
Sbjct: 242 DELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAML 301

Query: 110 KN----ACLALNFSEHLT--KMEEGKALI--ARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
           K+    A   L + E  +   + +   L            +   + T     Q++Q    
Sbjct: 302 KSKKEPAAEDLGWLEQSSLNSLVDVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSLTN 361

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VLK 208
           YC  DVEAT  + + L PL             + + G     ++ +              
Sbjct: 362 YCASDVEATHRILRVLYPLYADRFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYED 421

Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268
           L         +  E+   L                +      +      +      L   
Sbjct: 422 LSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP-----LPTV 476

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            +          RL +    +     L  A   
Sbjct: 477 EVKYAVNTPEERRLQAKFQHLYDQQALLPARRP 509



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 94/337 (27%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + +         +RS + A  G +LV AD+   E  + 
Sbjct: 756  CPQVVACGTLTRRAMEPTWMTASNSRT-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 814

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 815  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 873

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 874  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 918

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             +     + +           E     +Q   +++    R             R   I  
Sbjct: 919  ELDDRAYSSY-----------EASRLAIQRNRTLTEVFHRPNWQGGTESAMFNRLEEIAT 967

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +    A     +E+ +       +VQ+ + D   ++   M+    
Sbjct: 968  GSQPRTPFLGGRLSRALE--ADGGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMG 1025

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1026 SHVRFCLSFHDELRYLVKEEFSPKAALAMHITNLMTR 1062


>gi|229472387|gb|ACQ72708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKETGSIRSIDGRK 144


>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
 gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
          Length = 885

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 24/170 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  DE   + D  E  +    L +   D  ++ V H +  +    +K LG+ I   
Sbjct: 327 LMQISTRDED-FIIDTLELRSELYILNEAFTDPAIVKVFHGADSDIEWLQKDLGLYI--V 383

Query: 92  RWICTSVLARTNGLP-SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   +RT  L   SL +                    +  FC    D         
Sbjct: 384 NMFDTHQASRTLNLGRHSLDHL-------------------LKLFCNVDSDKRYQLADWR 424

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
                 ++F  Y + D      ++ RL        +       +     +
Sbjct: 425 IRPLPDEMFQ-YARADTHYLLYVYDRLRVDLWEVGNGQPALLQMVWHKSK 473


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 27/141 (19%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------- 48
           +S +  D ET    P    + ++G        ++    +    +P               
Sbjct: 275 LSYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDPGTPIPAASTKVHGIS 334

Query: 49  ----EQSAMPSDLLQYL--RDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSV 98
               + +       +         + VAHN+ F+    ++          W      T +
Sbjct: 335 DAMVQGAPDIGQAARAFHRFASDAVIVAHNAPFDMAFLRRHA--KRAGVSWDQPVLDTVL 392

Query: 99  LARTN---GLPSSLKNACLAL 116
           L+          +L   C  L
Sbjct: 393 LSAVLFGASQSHTLDALCERL 413


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411
             ++   + S  +R+  IA +G    + D + IEARV+AW+AGE W++  F +   IY  
Sbjct: 2   MYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEA 61

Query: 412 TYAKAFNTPIDKVSKEQRA 430
           + ++ F+ PI++V K  R 
Sbjct: 62  SASQMFHIPIEEVDKNLRQ 80


>gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 433

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 87/306 (28%), Gaps = 59/306 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWD-RTEQSAMPS 55
             L+ID E           V  Y     ++L     D          L D   +      
Sbjct: 21  KILWIDTE-----------VADYKFNPTLSLIQVLADANDLTGNASFLLDVLEQPELTVD 69

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-----RTNGLP-SSL 109
            + + + +  +  V HN+ ++     + LG D  ++   CT  LA         LP   L
Sbjct: 70  FIDKIMANPDIEKVMHNASYDI----RFLGND-RAQNITCTLKLARKIPYYVLPLPNHKL 124

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K    AL                      ++D               +   EY K DV  
Sbjct: 125 KTLIEAL------------------CGIPNVDKAEQGGDWGKRPLTEKQL-EYAKMDVVY 165

Query: 170 TRELFKRLIPLSDGERDLW---------LLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             E+   LI + D                  Q I  +   +D ++    + + A  + + 
Sbjct: 166 LAEVHSHLIEIVDEYCPDSATENLTLLGEQYQEIEAQWKPLDSEIAEIKERMKAGMQAQN 225

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDL 277
             +          + +  +     L    GI+    V +++   K +    +   L  + 
Sbjct: 226 VTNNSYFKLSSSTTMKVDFMTLANLAESQGIELNFPVTLTKEVQKQLGKLISHPSLQIEE 285

Query: 278 ILNRLA 283
           I +   
Sbjct: 286 ISSFRL 291


>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
 gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 814

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y    ++ L   +  ++   +            L +   
Sbjct: 250 EIAIDLE--------HHDTHSY--HGLVCLMQISTREKDWIVDTLKPWREELQILNEVFA 299

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK      
Sbjct: 300 DPKIIKVLHGSTMDVIWLQRDLGLYL--VGLFDTYHAAVALNYPKRSLKFLLEKF 352


>gi|261206146|ref|XP_002627810.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
 gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
          Length = 814

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y    ++ L   +  ++   +            L +   
Sbjct: 250 EIAIDLE--------HHDTHSY--HGLVCLMQISTREKDWIVDTLKPWREELQILNEVFA 299

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ +       T   A     P  SLK      
Sbjct: 300 DPKIIKVLHGSTMDVIWLQRDLGLYL--VGLFDTYHAAVALNYPKRSLKFLLEKF 352


>gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
          Length = 226

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 23/172 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +    +  +   +L   L D
Sbjct: 42  VAIDCET--------MGLNPHRD--RLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLED 91

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+        G         CT + +R          L+N    L   +
Sbjct: 92  LNVLKLFHFGRFDIAAMYHAFGALAAP--VYCTKIASRLVRTYTDRHGLRNLTQELIGVD 149

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +                       L       D    RE
Sbjct: 150 IS--------KQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDRE 193


>gi|212528170|ref|XP_002144242.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
 gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
          Length = 795

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 23/121 (19%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           +++ +D+E     T                   ++L   +  D+   +            
Sbjct: 248 NEIAVDLEHHDMHTYYGL---------------VSLMQISTRDKDWVVDTLQPWREDLQQ 292

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L +   D  ++ V H S  + +  ++ LG+ +       T   A   G P  SLK     
Sbjct: 293 LNEVFADPNILKVFHGSTMDIVWLQRDLGLYV--VGLFDTYHAAVALGFPKRSLKFLLEK 350

Query: 116 L 116
            
Sbjct: 351 Y 351


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 32/150 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC---------------AYAWDDEPVKLWD 46
            ++  D ET    P          E   + +                  A  +  +++  
Sbjct: 6   REIAFDTETTGLNPNEG---DRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRITG 62

Query: 47  RTEQS-------AMPSDLLQYLR-DETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
            T+           P  +  +L      + VAHN+ F+R       ++     IP  RW+
Sbjct: 63  ITDDHLRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWV 122

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFSEHL 122
            T  +A  R  G P+SL   C   + S   
Sbjct: 123 DTVQMARKRYPGAPASLDALCKRFDISLES 152


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 38/147 (25%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET               E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDNRA----DRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAV 56

Query: 49  EQ--SAMPSDLLQ--YLRDE------TVMCVAHNSLFERILF-KKTLGIDIPSK---RWI 94
                    D      + DE          +AHN+ F+      +   I +P     + I
Sbjct: 57  HGITDEFLKDKKPFAAVADEILAFFGDGKWIAHNATFDMGFINAEFARIGLPPILPDKVI 116

Query: 95  CTSVLARTNGL--PSSLKNACLALNFS 119
            T  +AR      P+SL   C      
Sbjct: 117 DTLSMARRKHPMGPNSLDALCRRYGID 143


>gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
 gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
          Length = 228

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 30/149 (20%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWAYAEQAVITLC---AYAWDD- 39
           M ++ +D ET    P                 +     +              A+     
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGID-IPSKRWIC 95
               L D+ + + +  D L ++ D     + HN+ F+        K +G+  IP  + + 
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIGDS--KLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117

Query: 96  TSVLA--RTNGLPSSLKNACLALNFSEHL 122
           T  +A  R  G P+SL   C   N     
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTS 146


>gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 364

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L   A ++  + L D  E     S 
Sbjct: 20  SQIAVDTEFYWMRTYY---------------PELCLVQIATEN-EIFLIDTLEDLDF-SK 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114
           L     D  +  + H++  +  + K+    D        T + A   G     SLK    
Sbjct: 63  LKDIFEDTNIQKIIHSATNDIPIIKRFF--DCEVNNIFDTQLAASFLGTQSQISLKALLK 120

Query: 115 -ALNFSEHL---TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             L+              + L  +    ++    +      H+++     +Y +   E  
Sbjct: 121 DILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQTDYKQYFYEEL 180

Query: 171 RELFKRLIPLSDGER 185
            ++ K      +   
Sbjct: 181 LDIQKTEFNTVENIH 195


>gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 212

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 31/183 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D E         +G+    +   + +         V L            L     
Sbjct: 30  RLAVDCE--------MMGLNPRRD--RLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFE 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  ++ + H +  + +  +  LGI++      CT + +                      
Sbjct: 80  NPEIVKIFHFARMDSLFLRYRLGINLQ--NVFCTKIAS----------KLAR-------T 120

Query: 123 TKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + G K LI  F    ID               +   EY   DV+    L ++L  + 
Sbjct: 121 YTDKHGLKDLIKEFYDEVIDKKNQSSDWG-KKILTKDQIEYASGDVKYLISLEQKLTEIL 179

Query: 182 DGE 184
             E
Sbjct: 180 VRE 182


>gi|229472223|gb|ACQ72626.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKEAGSIRSIDGRK 144


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 29/146 (19%)

Query: 1   MSKLFIDIETRSPQP--------LPKVGVWAYAEQAVITLCAY----AWDDEPVKLWDRT 48
           M +L +D ET    P        L  V +  Y    V     +    +   E   +   T
Sbjct: 1   MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPERSVPREATAIHGLT 60

Query: 49  EQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGI--DIPSKRWIC 95
           +          A+  D+++ L       + HN+ F+        + LG    I  +R   
Sbjct: 61  DGFLADKPLFGAIAPDIVKVLE--GARLIIHNASFDVGFLNFEFQKLGYQQPISMERVTD 118

Query: 96  TSVLAR--TNGLPSSLKNACLALNFS 119
           T  LAR    G P++L   C      
Sbjct: 119 TLALARRKHPGSPNNLDALCRRYGID 144


>gi|229472475|gb|ACQ72752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYANILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKEAGSIRSIDGRK 144


>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
          Length = 388

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 65/232 (28%), Gaps = 43/232 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E          G   +     I L   +  D    +         P+ L   L D
Sbjct: 28  IALDTE----------GASFHRFVDRIYLLQLSTADHEAVIDPLPIG--TPTRLGVLLED 75

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
             V  V H++ ++  L ++  G  +       T V A+  G+ +  L             
Sbjct: 76  PQVEVVLHDADYDLRLLRQDYGWRV--THLFDTRVAAQLLGIRAFGLAALLEQF------ 127

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                G  L  +  +      P                +Y   D      L  RL     
Sbjct: 128 ----FGIKLDKKHQRADWSMRPLTAD----------MLDYAAHDTRHLLGLRDRLHDELV 173

Query: 183 GERDL-WLLDQTINDRGYRIDLD-------LVLKLQELIAQERKKLDEDIVK 226
            +    W  ++     G R + +        +   ++L  +E  +L E +  
Sbjct: 174 QKGRWSWAQEEFTRAEGTRWEPEAPDTSFLRLKGARDLNRRELARLRELVRW 225


>gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 390

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 50/194 (25%), Gaps = 30/194 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E        +   +       + L   A D E   +        M       + 
Sbjct: 25  FIAIDTE------FIRENSYW----PELCLIQIADDKEAAAIDPLAPGLDMTPLTDLLVN 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +E ++ V H    +  +     G          T + A   G           + +S  +
Sbjct: 75  NEDILKVFHAGGQDLEIILHHTGK--MPFPLFDTQIAAMALG-------VGEQVGYSNLV 125

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +    K                  T  +H    +   +Y   DV     LF  L+    
Sbjct: 126 ERYLSIK-----------LDKGARFTDWSHRPLDRRQLDYAIADVTHLATLFPMLLKELR 174

Query: 183 GERDLWLLDQTIND 196
            +     LDQ +  
Sbjct: 175 DKGRGAWLDQEMER 188


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 51/197 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLL- 58
           M K+  DIET               E   + L  Y+  +   +++         P  L  
Sbjct: 7   MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62

Query: 59  -----QYLRDE-----------------TVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                ++L+D+                     +AHN+ F+        ++     +   R
Sbjct: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122

Query: 93  WICTSVLARTNGLPS--SLKNACLALN-----------------FSEHLTKMEEGKALIA 133
            I T  +AR     S   L + C                      S+   KM  G + I 
Sbjct: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182

Query: 134 RFCKGSIDSPPYDCTRA 150
              K + D    +  + 
Sbjct: 183 FGFKTNEDRFFKEEKKT 199


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET               E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDNRA----DRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAV 56

Query: 49  ------------EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP---SKR 92
                         + +   +L +  D     +AHN+ F+      +   I +P    +R
Sbjct: 57  HGITDEFLKDKQPFAEVAEQILTFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPER 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  +AR      P+SL   C      
Sbjct: 115 VLDTLSMARRKHPMGPNSLDALCRRYGID 143


>gi|229472487|gb|ACQ72758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKEAKEAGSIRSIDGRK 144


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 47/151 (31%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETR-----SPQPLPKVG-------------VWAY--------AEQAVITLCA 34
           M ++  D ET      S   L ++G               AY        A    +   +
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQRSMPAAAEAVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
            ++  +       +       +LL +L D     VAHN+ F+       L +    ++  
Sbjct: 61  DSFLRDKPLF---SHG---VEELLAFLEDS--HLVAHNARFDFGFLNHELRLCGLPEVSM 112

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
            R I T  +AR    G   SL   C      
Sbjct: 113 ARMIDTVAIARQLHPGAKHSLDALCTRYGID 143


>gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B]
 gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B]
          Length = 385

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+  +      L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQIAFRGDGKTDAVLVDPLSSDLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +  R+E V+ V H +  +  +F   +   +  K    T V A   G          
Sbjct: 67  EPLYELFRNEDVVKVFHAARQDLEIF--WVDASVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ + CK  +D        +    +      Y   DV   R+++
Sbjct: 118 QVGYET----------LVRKICKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    D       +
Sbjct: 167 EHLRKELDKTGRSHWV 182


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 115 IVDTLALARRKHPIGPNSLDALCKRYGID 143


>gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 377

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 74/274 (27%), Gaps = 38/274 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D  T  +  P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAGLLQIG---DGKRAYLIDPLTIDNWQP--LAALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPAVLKVLHACSEDLEVLLRLTGS--LPAPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   +    Y   D     E+F  L P  
Sbjct: 129 GIELPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAEVFVLLRPKL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             E+  W+L+       +    +D  ++  + +      R +L             +  +
Sbjct: 173 SDEKYRWVLEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
                  +   +   L       L ++    ++ 
Sbjct: 233 DLPRNRIIREHSLWPLARTQPDNLGALAKIEDMH 266


>gi|229472449|gb|ACQ72739.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472451|gb|ACQ72740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472479|gb|ACQ72754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYANILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKEAGSIRSIDGRK 144


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 38/146 (26%), Gaps = 30/146 (20%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQA----VITLCAYAWD-DEPVKLWDRTEQS 51
           M ++  D ET         + ++G      Q      + L     + D      D     
Sbjct: 1   MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLF---INPDGRAVHPDALAVH 57

Query: 52  AMPSDL---LQYLRDETVMC---------VAHNSLFERILFKKTLG-IDIPSKR---WIC 95
            +            D              VAHN+ F+          I +P       I 
Sbjct: 58  GITDQFLADKPVFADLADEIAAFFDGAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVID 117

Query: 96  TSVLARTNGL--PSSLKNACLALNFS 119
           T  LAR      P+SL   C      
Sbjct: 118 TLALARRRHPMGPNSLDALCRRYGID 143


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 15  MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGID 157


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 15  MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 129 IVDTLALARRKHPIGPNSLDALCKRYGID 157


>gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria
           maculans]
          Length = 783

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 21/142 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y     ++L   +  ++   +            L +  
Sbjct: 235 KEIAVDLE--------HHDNRSYIGI--VSLMQISTRNQDWIVDTLKPWRRKLECLNEVF 284

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-NFS 119
            +  ++ V H +  + +  ++ LG+ +       T   AR+ G P  SL         F 
Sbjct: 285 ANPDIIKVLHGAYMDIMWLQRDLGLYV--VGLFDTYHAARSLGYPGASLAYLLDRFIGFK 342

Query: 120 EHLTKMEE-------GKALIAR 134
                          GK L   
Sbjct: 343 AQKQYQIADWRIRPLGKELFEY 364


>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 635

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 47/183 (25%), Gaps = 37/183 (20%)

Query: 2   SKLFIDIE---TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            ++ ID+E   T S   L             + L   +  D+   +            L 
Sbjct: 247 KEIGIDLEHHDTHSYYGL-------------VCLMQISTRDKDWIVDTLLPWREELQILN 293

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +   +  ++ V H S  + I  ++ LG+ +       T   A               L++
Sbjct: 294 EVFANPQIVKVLHGSSMDVIWLQRDLGLYL--VGLFDTYHAAAA-------------LHY 338

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            +   K    K               Y               +Y + D      ++  L 
Sbjct: 339 PKKSLKFLLDK------FVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYIYDHLR 392

Query: 179 PLS 181
              
Sbjct: 393 NEL 395


>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297]
 gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
          Length = 380

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 42/192 (21%)

Query: 4   LFIDIE---TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           + +D E   T S               A + L     +D+   +         P  L++ 
Sbjct: 27  IALDTEFVRTDSFY-------------AHLGLIQVGIEDQVWLIDPLQINDWAP--LVRV 71

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D  ++ V H    +  +    LG+++       T + A   G P  +  A        
Sbjct: 72  LSDPAIVKVLHALSEDAEVLAHHLGVELQ--NVFDTQIAAGFLGHPVQMSYA-------- 121

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLI 178
                                  P + TR++ +Q         Y   DV     +++   
Sbjct: 122 ------------RLVEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCA 169

Query: 179 PLSDGERDLWLL 190
                +     +
Sbjct: 170 AQLKEQNRYAWV 181


>gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
 gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
          Length = 239

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 41/150 (27%), Gaps = 32/150 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           M ++  D ET    P    G     E   + L  +              Q  MP +    
Sbjct: 1   MREISFDTETTGLNP---RGGDRLVEIGGVELWNH-IPTGKSYHVYINPQRDMPEEAFRV 56

Query: 59  -----QYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                ++L D+                   V HN+ F+        +++    I + + +
Sbjct: 57  HGLSEEFLSDKQLFDQVADEFLDFVGDATLVIHNAAFDMGFINMELERSGRRIISNDQVL 116

Query: 95  CTSVLARTNGLPS--SLKNACLALNFSEHL 122
            T  LAR        SL   C         
Sbjct: 117 DTLDLARRKHPTGPNSLDALCSRYGIDNSK 146


>gi|229472381|gb|ACQ72705.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472595|gb|ACQ72812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKEAGSIRSIDGRK 144


>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
 gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
          Length = 396

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 49/274 (17%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + +D E     T                   + L      D  V +    E   +   L
Sbjct: 22  YITVDTEFLREKTYW---------------PQLCLVQVGGPDGAVAIDPLAEGIDLTP-L 65

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              + D +V+ V H +  +  +F   L   I       T V A   G   S       + 
Sbjct: 66  FALMSDPSVLKVFHAARQDVEIF-WHLSGQI-PHPLFDTQVAAMVCGFGES-------VG 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +   +TK+            G+        T  +H    +    Y   DV   R  +++L
Sbjct: 117 YETLVTKLA-----------GARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKL 165

Query: 178 IPLSDGERDLWLLDQTI----NDRGYRIDLD--LVLKLQELIAQERKKLDEDIVKLTDGI 231
                       L++ +    +   YR+D D   +             + +++    +  
Sbjct: 166 KRRLARSGRSHWLEEEMAILTDPATYRVDPDSSYLRLKVRTNKPRFMAILKELAAWRERE 225

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
            +   Q       L     +++   +  T+  + 
Sbjct: 226 AQRRDQPR--SRVLRDEALLEIAAHAPTTVDDLA 257


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 115 IVDTLALARRKHPMGPNSLDALCKRYGID 143


>gi|297697407|ref|XP_002825850.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Pongo abelii]
          Length = 1247

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 88/339 (25%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 849  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 907

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 908  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 967

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 968  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELHL 1018

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E           + A R             +   I     
Sbjct: 1019 PVDRTEGGWISLQDLRKVQRETARKSQWRKWEVIAERAWK-GGTESEMFNKLESIATSDI 1077

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
             R      +   +   +A  +              +VQ+ + D   ++   MK   +   
Sbjct: 1078 PRTPVLGCRISRALEPSAVREEFMTSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1132

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1133 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1171


>gi|229472571|gb|ACQ72800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            RS  I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 6   CRSLFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYANILLNDDIHQVNADK 59

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 60  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 118

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 119 EAVKKKAKEAGSIRSIDGRK 138


>gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37]
 gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37]
          Length = 385

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 46/210 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A     DE   L D        
Sbjct: 22  YITVDTEFLRERTYYS---------------KLCLIQLALPGKGDEDAVLVDPMVDGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             LL+  RDE+++ V H +  +  +F   +   +  +    T V A   G          
Sbjct: 67  DPLLELFRDESIVKVFHAARQDLEIF--FIDHGVIPQPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    +    +  K S  +        +          Y   DV   RE++
Sbjct: 117 ----EQVGYETLVKRIAKQQLDKSSRFTDWSRRPLTDAQ------KSYALADVTHLREIY 166

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           + L    +       +     + G   D +
Sbjct: 167 EFLAAKLEESGRSRWVA---EELGVLTDPE 193


>gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 214

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E         +G+    +   + L     + + V      +     ++L   + D
Sbjct: 32  LAIDTE--------AMGLIHGRD--RLCLVQICDEQDNVACIKIQQHQTKANNLQSLMED 81

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  V H + F+         ++I      CT + ++  G   S           E + 
Sbjct: 82  SAIEKVFHYARFDVAAIS--CNLNIAVNSIFCTKLASK-IGRTYSP-----RHGLKEVIL 133

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           ++      I    +                +  +   EY   DV    +   +L  +   
Sbjct: 134 ELV----GIELDKQAQSSDWGRVG------ELTEKQLEYATNDVRYLIQARNQLEKMLIR 183

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
           E   W L +   +    +    + +   +  
Sbjct: 184 EDR-WELTKRCFECISVMSELDIRRFHNIFE 213


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 15  MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGID 157


>gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
          Length = 203

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 26/178 (14%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   +  +    +     +     +L + L DE++  + H    +    K  L     
Sbjct: 38  LCLIQISTGNSDAHIIQLDREKYDAPNLNKVLSDESITKIFHYGRADMAHIKHYL--KTE 95

Query: 90  SKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   + T + ++         SL                   K LI  F    +D     
Sbjct: 96  TNNILDTKIASKLARSYSDSHSL-------------------KTLIKEFMN--VDVSKQF 134

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            +     +      +YC  DV    ++ + L  +   E+ + L    +     R+DLD
Sbjct: 135 QSSDFGGELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSCLAFLKTRVDLD 192


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------------AYAW 37
           M ++  D ET   + L         E   + L                        A A 
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                 +L D+   + +  + L+++  +    VAHN++F+         +    +I S+ 
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            + T  LAR      P+SL   C      
Sbjct: 115 IVDTLALARRKHPMGPNSLDALCKRYGIE 143


>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
          Length = 671

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y    ++ L   +  D+   +            L +   
Sbjct: 250 EIAIDLE--------HHDAHSY--HGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ I       T   A     P  SLK      
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPKKSLKFLLEKF 352


>gi|194761126|ref|XP_001962783.1| GF15619 [Drosophila ananassae]
 gi|190616480|gb|EDV32004.1| GF15619 [Drosophila ananassae]
          Length = 1134

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 92/337 (27%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G KLV AD+   E  + 
Sbjct: 754  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYKLVGADVDSQELWIA 812

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 813  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 871

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
             +  +T+               K+   F   +    +               +L     +
Sbjct: 872  QQFAETLLRQFNPTFSASEAKAKAMKMFSITKGKREY---------------RLREEFHD 916

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             +     + +           E     +Q   +I     R             R   I  
Sbjct: 917  ELDDRAYSSY-----------EASRLAIQRNRTIGEVFHRPIWQGGTESAMFNRLEDIAT 965

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  +  +   +   +    +     +           +VQ+ + D   ++   M+    
Sbjct: 966  QSQPQTPFLGGRLSRALEADSDPTQEQRFL--PTRINWVVQSGAVDFLHLMLVSMRWLMG 1023

Query: 620  NGYDIVLTVHDEIVSETPDTPYFSVG---TLCSLMTK 653
                  L+ HDE+     +   +       + +LMT+
Sbjct: 1024 PHVRFCLSFHDELRYLVKEEVAYKAALAMHITNLMTR 1060


>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
 gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
          Length = 392

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 71/273 (26%), Gaps = 38/273 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      L +   +       + L   A  D+   +            L    RD
Sbjct: 26  IALDTE-----FLREKTYY-----PQLCLVQAATLDQLACIDPLRLD---IQQLAPLFRD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  V H +  +  L  + LG          T + A   G                   
Sbjct: 73  PGITKVFHAASQDMELLYRELGFV--PSPVFDTQIAASMLGYG----------------- 113

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
             + G A + +             T  +          Y   DV     LF RL+   D 
Sbjct: 114 -EQVGYANLVKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDT 172

Query: 184 ERDLWLLDQTINDRGYRI----DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
              +  L   +           D +   +    + + + K    +  +     R+++ + 
Sbjct: 173 HDRMHWLRPEMEALSNPALYEPDPEQSWQRVSGVKRLKPKERGVLKCVAAWRERTAQSSN 232

Query: 240 ALRMY-LFLITGIDLVDMSEGTLKSILSHSNIT 271
             R + L     +D+   +    + +       
Sbjct: 233 RPRRWVLSDDLLLDIARRTPADAQGLRELRQFP 265


>gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 212

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 43/147 (29%), Gaps = 18/147 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D E         +G+    +   + +   +     V L            + +   
Sbjct: 30  RLAVDCE--------MMGLNPRRD--RLCVVQISDSKNKVALVQILPGQKEAPHIQKLFE 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL--- 116
            + +  + H +  +    +  LGI +      CT + ++          LK         
Sbjct: 80  SKEITKIFHFARMDMTFLRARLGIKVQ--NVFCTKIASKLARTYTDKHGLKELIREFFEE 137

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP 143
           N  +     + GK ++ +       + 
Sbjct: 138 NIDKKNQSSDWGKKILTKDQVDYASTD 164


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + K   K   I +PS  +I
Sbjct: 53  IHGIRPHMVKDELEFDKIWGKIKDYFNNNLVIAHNASFDMSVLKSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFS 119
           CT  L+    +N   + L      L + 
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGYK 140


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 30/143 (20%)

Query: 3   KLFIDIETRSP-----QPLPKVGVWAYA-------EQAV--------ITLCAYAW---DD 39
            +  D ET          L  +G            E           I   + A     D
Sbjct: 490 IVAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQRPIPSASTAIHGLGD 549

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + V+         +      Y+   + + +AHN+ F+ +  +   G D      + T +L
Sbjct: 550 QDVENAPTA--EQVLPRFRDYV--GSAVLLAHNAAFDMLAIRPGPGTDAFDMPVLDTLLL 605

Query: 100 ARTNGL---PSSLKNACLALNFS 119
           +R          L +        
Sbjct: 606 SRALDPGLEGHDLDSLAKRYGLR 628


>gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
 gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
          Length = 385

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A     D+   L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAVPAEGDDSAVLVDPLAEGMSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +  R+E+V+ V H +  +  +F   +   +       T V A   G          
Sbjct: 67  DPLYELFRNESVVKVFHAARQDLEIF--WVDAGVFPTPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ + CK  +D        +      +    Y   DV   R+++
Sbjct: 118 QVGYET----------LVRKICKEGVDKTSRFTDWSRRPLT-EAQKSYALADVTHLRKIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L       +    +
Sbjct: 167 EYLAGELKKTKRDHWV 182


>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
          Length = 807

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y    ++ L   +  D+   +            L +   
Sbjct: 250 EIAIDLE--------HHDAHSY--HGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ I       T   A     P  SLK      
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPKKSLKFLLEKF 352


>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 61/240 (25%), Gaps = 37/240 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +   +     + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLVQMASPTLEVLVDPLAKGIDLTPMF-ELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ V H +  +  +    LG  +       T V A   G   S              
Sbjct: 69  NPNVVKVFHAARQDIEII-YHLG-GLIPHPIFDTQVAAMVCGFGDS------------IS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 K    +  K S  +                   Y   DV   R+++  L    +
Sbjct: 115 YDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLD------YALADVTHLRDVYLSLKAQLE 168

Query: 183 GERDLWLLDQTINDRGYRI------DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
            E     L + +N    R       D   +     L       + + +    +   RS  
Sbjct: 169 REGRSLWLTEEMNILESRDTYDMHPDDAWLRLKSRLRKPTELAILKFVAAWREREARSRN 228


>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
          Length = 807

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y    ++ L   +  D+   +            L +   
Sbjct: 250 EIAIDLE--------HHDAHSY--HGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ I       T   A     P  SLK      
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPKKSLKFLLEKF 352


>gi|241948847|ref|XP_002417146.1| exosome complex exonuclease RRP6, putative; ribsomal RNA processing
           protein 6, putative [Candida dubliniensis CD36]
 gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
           CD36]
          Length = 776

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 50/192 (26%), Gaps = 36/192 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +  ++   +     +  +   L +  
Sbjct: 250 EIAVDLE-----------HHDYRSYYGIVCLMQISSREQDWIVDTLVLRDDLT-VLNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            D  ++ V H +  + I  ++ LG+ +       T   +R  G P  SL          +
Sbjct: 298 ADPNIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTYHASRALGFPRFSLAYLLEVYAHFK 355

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              + +     I                             Y + D      ++ +L   
Sbjct: 356 TSKQYQLADWRIRPLSPP--------------------MLAYARSDTHFLLFIYDQLKNK 395

Query: 181 SDGERDLWLLDQ 192
                 L  +  
Sbjct: 396 LIDANKLAQVLY 407


>gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 204

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 35/127 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA------------------------VITLCAY- 35
           M  LF D ET S +P     +      A                         I   +  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFSLE 60

Query: 36  -AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSK 91
             ++    + +    +  +P     ++       + HN  F+    K     LG D   K
Sbjct: 61  KLYELSDGQYF----EDLVPEFFKDFIE--ADFLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 92  RWICTSV 98
              CT +
Sbjct: 115 HSFCTMI 121


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 28/147 (19%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQ---AVITLC---------AYAWD-DEPVKL 44
           S +  DIET    P    + + G     +      +T           A+  +     + 
Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGAFTTELTGITQQ 483

Query: 45  WDRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
              +E  ++   L +     D  V  +AHN+ F+    K   +   +  P+   I T + 
Sbjct: 484 MLDSEGLSIKDGLQRIYDCLDGKVA-IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIA 542

Query: 100 ARTNGLP----SSLKNACLALNFSEHL 122
           +R  G P      L++    L      
Sbjct: 543 SR-IGFPNYKRHKLEDVASRLGVVYDP 568


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 35/140 (25%), Gaps = 32/140 (22%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--------------------L 44
             D+ET    P       A      + L         V                      
Sbjct: 445 AFDLETTGLDPRE----DAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLT 500

Query: 45  WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
           W+  +      ++L   R   E  + VAHN  F+    +K   + I     + T +LA  
Sbjct: 501 WEMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK---VGIDQPPLVDTLLLAHL 557

Query: 103 NGL---PSSLKNACLALNFS 119
                    L+         
Sbjct: 558 LFPDLKDHRLERLAERFGVP 577


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 38/156 (24%)

Query: 1   MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQ------ 50
           M   ++ +D ET         G     E   + L  Y      V     D          
Sbjct: 1   MKVREIVLDTETTGLD---ADGGDRIIEIGCVELVDY-VMTGRVFHKYIDPERDISVAAT 56

Query: 51  ----------------SAMPSDLLQYLRDETVMCVAHNSLFERILFK----KTLGIDIPS 90
                           + +  +LL +L+D     V HN+ F+    +    +       +
Sbjct: 57  RVHGITRESLIGMPKFAEVADELLDFLQDSA--LVIHNARFDMRFLEVEIERLSNKRAIT 114

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
              + T  +AR    G+P+SL   C   N S    K
Sbjct: 115 NTIVDTLEMARKKFPGMPASLDALCKRFNISTQERK 150


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 52/153 (33%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD----------RTEQS 51
           S + +D+ET         G+  +++   I           VK+ D               
Sbjct: 4   SFVALDLETT--------GLDCWSDD--IIEIGM------VKVIDGQERDFFQSLVRPGG 47

Query: 52  AMPSDLLQY--LRDET----------VMCV----------AHNSLFERILFKKTLGIDIP 89
            +P  + Q   L+D+           +  +           HN  F+R       G  + 
Sbjct: 48  PLPVKIKQLTGLKDDDFQSAPWFQTIIPKILTFIGDLPLVGHNIKFDRDFLAAACGHQL- 106

Query: 90  SKRWICTSVLARTN---GLPSSLKNACLALNFS 119
                 T  LAR          L   C      
Sbjct: 107 PNDLYDTLELARILQPSAPSHRLGELCKIAGVE 139


>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
 gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
          Length = 741

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 62/255 (24%), Gaps = 52/255 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +       L D          L +  
Sbjct: 233 EIAVDLE-----------HHDYRSYYGIVCLMQVSTRQTD-YLVDTLALRDDLVVLNEVF 280

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            +  ++ V H +  + I  ++ LG+ I       T   +R  G P  SL           
Sbjct: 281 ANPLIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASRALGFPRHSLAYLLETFA--- 335

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K  +   L     +    +                   Y + D      ++ +L   
Sbjct: 336 -SFKTSKKYQLADWRVRPLSKA----------------MSAYARADTHFLLNIYDQLRNK 378

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              E  L  +                      +A+   +  +   K+ +  + S      
Sbjct: 379 LIIENKLAGVLAE----------------SRNVAKRSFQYSKYRPKVPNSSVYSPVDRAD 422

Query: 241 LRMYLFLITGIDLVD 255
               L     I L  
Sbjct: 423 GWKVLMNQYNIPLEK 437


>gi|167947000|ref|ZP_02534074.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 116

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 20/70 (28%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53
              D ET S   +          QA I   ++A +           +            +
Sbjct: 51  FAFDTETTSLDYM----------QAEIVGVSFAVEAGRAAYLPLAHRYPGAPDQLDRDWV 100

Query: 54  PSDLLQYLRD 63
            + L   L D
Sbjct: 101 LAQLKPLLED 110


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M  L +D ET         G     E   + +                       A A  
Sbjct: 1   MRLLVLDTETTGLN---AKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-----K 91
               +   D+ + + +   L  +++D  +  + HN+ F+      +   + +P       
Sbjct: 58  GLTTEFLRDKPKFAEIADALRDFVKDADI--IIHNAPFDIGFLNAEFAMLGLPPFCDHCG 115

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             I T V A+    G  +SL   C     S
Sbjct: 116 EVIDTLVQAKAMFPGKRNSLDALCERFGIS 145


>gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
 gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
          Length = 228

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           M ++ +D ET    P          E   + L  +              +  MP +    
Sbjct: 1   MREIVLDTETTGFDP---ESGDRIVEIGAVELMGH-VATGKTYHQYINPERMMPDEAFQV 56

Query: 59  -----QYLRDE---------------TVMCVAHNSLFERILFKKTLGI-DIPSKRW---I 94
                ++LRD+                   V HN+ F+       L   ++P   W   I
Sbjct: 57  HGLGDEFLRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAI 116

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T  +A  R  G P+SL   C      
Sbjct: 117 DTLAIARKRFPGSPASLDALCRRFGID 143


>gi|19527699|gb|AAL89964.1| AT02241p [Drosophila melanogaster]
          Length = 1145

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 97/337 (28%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 759  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 876

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 877  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 921

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             ++    + +           E     +Q   +++    R             R   I  
Sbjct: 922  ELEDRAYSSY-----------EASRLAIQRNRTLAEVFHRPKWQGGTESAMFNRLEEIAT 970

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +    A +   +E+ +       +VQ+ + D   ++   M+    
Sbjct: 971  GSQPRTPFLGGRLSRALE--ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMG 1028

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1029 SHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 71/261 (27%), Gaps = 31/261 (11%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN----ACLALN 117
           + V HN  ++R   K+    +    R++ T  L            + LK+    A   L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 FSEHLT--KMEEGKALIARFCKGSID--SPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           + E  +   + E   L       S +  +   + T     Q++Q    YC  DVEAT  +
Sbjct: 314 WLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VLKLQELIAQERKKL 220
            + L PL             + + G     ++ +              L         + 
Sbjct: 374 LRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRR 433

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            E+   L                +      +      +      L  S  T         
Sbjct: 434 AEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVELKDSGNTPE-----ER 488

Query: 281 RLASSGSAILKLNTLSEAVSS 301
           RL +    +     L  A   
Sbjct: 489 RLQAKFQHLYDQQALLPARRP 509


>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
 gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
          Length = 376

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 77/266 (28%), Gaps = 37/266 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E      L +   +       + L   +  +E   +   +     P  L++   D
Sbjct: 22  LAVDTE-----FLREKTYY-----PKLCLVQVSTGEEIAAIDPLSIDDLSP--LVRLFED 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLALNFSEH 121
           + ++ V H    +  +     G+         T + A   G+   +S  +          
Sbjct: 70  QKIVKVIHACSQDLEVLL--YGMHCACAPVFDTQLAAAFLGMRQQASYASVVEHY----- 122

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 G  L            P D  +  + +    +        +  R +++RL+  +
Sbjct: 123 -----MGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLP------DIYRCMYERLMKTN 171

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL---KLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                +  ++       ++ D        K    + + +  L  +I    +         
Sbjct: 172 RLGWLMPEMNAYTAPENFKRDPKEAYLHLKRSNSLTRRQMALAREICAWREERAAQHNIP 231

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSI 264
              +  +   T +++   S  T + +
Sbjct: 232 R--KWIISDETLVEICKRSPATSERL 255


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-------------------------AY 35
           M ++ +D ET    PL    +        I                            A+
Sbjct: 1   MREIVLDTETTGLDPLRGDRL------VEIGCVEILNRMPTGQIYHCYINPERDMPAEAF 54

Query: 36  AWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
           A      +        + +  + L ++ D     V HN+ F+         +     IP 
Sbjct: 55  AVHGLSAEFLSTKPLFAEVAEEFLAFIADA--PLVIHNASFDIGFINAELARLSQPPIPR 112

Query: 91  KRWICTSVLARTNGLPSS--LKNACLALNFS 119
            R + T +LAR      S  L + C      
Sbjct: 113 DRLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|315054289|ref|XP_003176519.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
 gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
          Length = 827

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              Y    ++ L   +  ++   +            L +  
Sbjct: 271 KEIAVDLE--------HHDGHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVF 320

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFS 119
            D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK      + F 
Sbjct: 321 ADPSIVKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASVLQLPKKSLKFLLHEYVGFD 378

Query: 120 EHL 122
              
Sbjct: 379 ADK 381


>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
 gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
          Length = 389

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 32/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A  D    +    E       LL+ LR
Sbjct: 22  FIAVDTE------FMRETTYW----PKLCLIQVASPDIEACIDPLAEG-MDLEPLLEILR 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +F     ++        T V                        
Sbjct: 71  DPGVLKVFHAARQDVEIFNN---LNAMPTPLFDTQVA-----------GMAAGFG----- 111

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +     AL+ +  K  +D        A    +      Y   DV     LF  L    +
Sbjct: 112 -EQIAYDALVRQMLKIELDKSSRFTDWARRPLSDAQLT-YAVADVTHLATLFPILRERLE 169

Query: 183 GERDLWLLDQTI 194
               L  +++ +
Sbjct: 170 KAGRLAWVEEEM 181


>gi|1401344|gb|AAC47290.1| DNA polymerase gamma [Drosophila melanogaster]
          Length = 1145

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 97/337 (28%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 759  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 876

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 877  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 921

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             ++    + +           E     +Q   +++    R             R   I  
Sbjct: 922  ELEDRAYSSY-----------EASRLAIQRNRTLAEVFHRPKWQGGTESAMFNRLEEIAT 970

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +    A +   +E+ +       +VQ+ + D   ++   M+    
Sbjct: 971  GSQPRTPFLGGRLSRALE--ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMG 1028

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1029 SHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 71/261 (27%), Gaps = 31/261 (11%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN----ACLALN 117
           + V HN  ++R   K+    +    R++ T  L            + LK+    A   L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 FSEHLT--KMEEGKALIARFCKGSID--SPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           + E  +   + E   L       S +  +   + T     Q++Q    YC  DVEAT  +
Sbjct: 314 WLEQSSLNSLVELHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VLKLQELIAQERKKL 220
            + L PL             + + G     ++ +              L         + 
Sbjct: 374 LRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRR 433

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            E+   L                +      +      +      L  S  T         
Sbjct: 434 AEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVELKDSGNTPE-----ER 488

Query: 281 RLASSGSAILKLNTLSEAVSS 301
           RL +    +     L  A   
Sbjct: 489 RLQAKFQHLYDQQALLPARRP 509


>gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04]
          Length = 387

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 54/197 (27%), Gaps = 45/197 (22%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW----DDEPVKLWDRTEQSAM 53
            + ID E     T                   + L   A     DD  V +        +
Sbjct: 22  YVTIDTEFLRERTYYS---------------KLCLIQLAVPGKGDDHAVLVDPLAHGLKL 66

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              L     DETV+ V H +  +  +F   +   +  K    T V A   G         
Sbjct: 67  -DALYALFEDETVVKVFHAARQDLEIF--CVDAGVLPKPLFDTQVAAMVCGF-------G 116

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             + +   + K+   K  I +             T  +     +    Y   DV   R++
Sbjct: 117 EQVGYETLVRKIT--KNSIDKSS---------RFTDWSRRPLTEAQKSYALADVTHLRQV 165

Query: 174 FKRLIPLSDGERDLWLL 190
           ++ L    +       +
Sbjct: 166 YEFLRAKIEKTGRGPWV 182


>gi|17136648|ref|NP_476821.1| tamas [Drosophila melanogaster]
 gi|27923967|sp|Q27607|DPOG1_DROME RecName: Full=DNA polymerase subunit gamma-1, mitochondrial; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            Short=Protein tamas; Flags: Precursor
 gi|7298099|gb|AAF53338.1| tamas [Drosophila melanogaster]
 gi|201065799|gb|ACH92309.1| FI06005p [Drosophila melanogaster]
          Length = 1145

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 97/337 (28%), Gaps = 43/337 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 759  CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 876

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
                +T+               K+   F   +    +               +L     +
Sbjct: 877  QLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY---------------RLREEFHD 921

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVL 562
             ++    + +           E     +Q   +++    R             R   I  
Sbjct: 922  ELEDRAYSSY-----------EASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIAT 970

Query: 563  PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
             S  R  +   +   +    A +   +E+ +       +VQ+ + D   ++   M+    
Sbjct: 971  GSQPRTPFLGGRLSRALE--ADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMG 1028

Query: 620  NGYDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
            +     L+ HDE+     +           + +LMT+
Sbjct: 1029 SHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 71/261 (27%), Gaps = 31/261 (11%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN----ACLALN 117
           + V HN  ++R   K+    +    R++ T  L            + LK+    A   L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 FSEHLT--KMEEGKALIARFCKGSID--SPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
           + E  +   + E   L       S +  +   + T     Q++Q    YC  DVEAT  +
Sbjct: 314 WLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL----------VLKLQELIAQERKKL 220
            + L PL             + + G     ++ +              L         + 
Sbjct: 374 LRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRR 433

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280
            E+   L                +      +      +      L  S  T         
Sbjct: 434 AEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVELKDSGNTPE-----ER 488

Query: 281 RLASSGSAILKLNTLSEAVSS 301
           RL +    +     L  A   
Sbjct: 489 RLQAKFQHLYDQQALLPARRP 509


>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
          Length = 882

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 14/115 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E  S         +       + L   +  +E   +     +  M   L +   
Sbjct: 268 EIAIDLEYHS---------YRTFGGF-VCLMQLSTREEDWVVDTLAVRDEM-EALNEVFT 316

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H +  + +  ++   + I       T   ++    P  SL       
Sbjct: 317 DSQIVKVLHGAESDIVWLQQDFNLYI--VNLFDTYHASKVLDFPRHSLATLLEMY 369


>gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET    P                  L    +  Y              A A 
Sbjct: 1   MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNPGRDSDPE----ALAV 56

Query: 38  DDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPS--- 90
                +          +   L+ Y++D  V  + HN+ F+       L   G+ + +   
Sbjct: 57  HGLTTEFLSGHPRFEEVAQQLVDYVKDAEV--IIHNAAFDVKFLNAELTRAGLPVFNSLC 114

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
            +   + + AR        SL   C     S
Sbjct: 115 GKITDSLLHARELHPGKRNSLDALCERYGIS 145


>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
 gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
          Length = 830

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 49/393 (12%), Positives = 90/393 (22%), Gaps = 50/393 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             + +D+E             +Y     IT L   +       + D        S L + 
Sbjct: 234 KYIAVDLE-----------HHSYRSFLGITCLIQMSTLGSD-YIIDALALRDHLSILNEV 281

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS 119
             D  ++ V H S  + +  ++  G+ +       T + AR       SL          
Sbjct: 282 FTDPKIVKVFHGSDSDLMWLQRDFGVYV--VNLFDTGIAARLLQYGRFSLSYLLQRF--- 336

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                             G   +  Y               EY + D      +  R+  
Sbjct: 337 -----------------VGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHIASRMCR 379

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
                  L +  +       R     V      +   R+             + +     
Sbjct: 380 ELQDRDLLSVAIERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALR 439

Query: 240 ALRMYLFLI-TGIDLVDMSEGTLKSILSH-----SNITQLAKDLILNRLASSGSAILKLN 293
                         L +     +  +L                L+   +      I+   
Sbjct: 440 DSIARREDESLHYVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIVDAR 499

Query: 294 TLS----EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349
            L        S + RL             R S  +   QNL R     +   +    +N 
Sbjct: 500 NLPITDLPLTSEEPRLSTQPNSQQQENDKRSSVNIPNTQNL-RYALPHDYSREIHLLVNS 558

Query: 350 GETIADPLGLASDCVRSCIIAS---NGKKLVVA 379
            +         S   +S ++AS       L   
Sbjct: 559 PDYSDVTCTELSTNKKSSMLASALLPNHCLAGI 591


>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
 gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
          Length = 380

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 25/303 (8%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 33  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FIALLA 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ + H+   + ++F +    D   +  I T ++AR  GL +S       L      
Sbjct: 80  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFIGLGAS-AGLAK-LAQQYLN 135

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLS 181
            ++++G        +   D              W L   Y   + E  +  +++ +    
Sbjct: 136 IEIDKGATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEKAVSDDC 191

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           +         Q  +     +D+    KL  L     + L +    +      +       
Sbjct: 192 ELALSKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAKWRQNVAIERDLAL-SYIVK 250

Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
              L+     +        L+  L+ + +    K ++     +   +        E +S 
Sbjct: 251 SDNLW-KVAKNNPRNISEMLEMGLTENEVRVRGKKILQLLAQARRISSNDYPKPIERISE 309

Query: 302 DGR 304
           D R
Sbjct: 310 DPR 312


>gi|229472455|gb|ACQ72742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R   I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRELFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +   +    +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +  E      + G  
Sbjct: 125 EAVKKKAKEAGSIRSIDGRK 144


>gi|326912829|ref|XP_003202748.1| PREDICTED: DNA polymerase theta-like [Meleagris gallopavo]
          Length = 2152

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 625  VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673
            +L +HDE++ E  +     V  +    M      +  L +K        +
Sbjct: 2097 ILQLHDELLYEVAEDDVIQVAQIVKHEMENAVKLSVKLNVKV--KIGPSW 2144


>gi|195437646|ref|XP_002066751.1| GK24652 [Drosophila willistoni]
 gi|194162836|gb|EDW77737.1| GK24652 [Drosophila willistoni]
          Length = 1162

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 79/329 (24%), Gaps = 46/329 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + +         +R+ + A  G +LV AD+   E  + 
Sbjct: 776  CPQVVACGTLTRRAMEPTWMTASNSRA-DRLGSELRAMVQAPPGYRLVGADVDSQELWIA 834

Query: 390  A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
            +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 835  SVLGDAYAWGEHGATPLGWMTLSGNKSNQSDMHSITAKAV-GISRDHAKVINYARIYGAG 893

Query: 445  AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-----HLWMQDQYPEFAVKDKLI 499
             +  + +               K+   F   +    +          +  P    +   +
Sbjct: 894  QQFAENLLQQFNPTFSASEAKAKAMKMFSITKGKRIYRLRDEFHDELEDRPYSGYEATRL 953

Query: 500  GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                                 W+  TE       E  +  A+         + R      
Sbjct: 954  AVQRNRPISEVFH-----RSSWQGGTESAMFNRLEEIATEAQPKTPFLGCRLSRALEADT 1008

Query: 560  IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKN 616
                  R L                                +VQ+ + D   ++   M+ 
Sbjct: 1009 GADQEQRFL--------------------------PTRINWVVQSGAVDFLHLMLVSMRW 1042

Query: 617  ATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
               +     L+ HDE+     +       
Sbjct: 1043 LMGSHARFCLSFHDELRYLVREDMAPKAA 1071


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 24/136 (17%)

Query: 6   IDIETRSP---QPLPKVGVWAYAEQAVIT-----LCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +   GV+       IT     L     D  PV +   T +       
Sbjct: 28  VDVETTGLGRSDRVISAGVYQLDPDGEITDHWYTLVNPQRDPGPVWIHGLTSEVLAGAPT 87

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
              + ++  + LRD   + VAHN+LF+  +  +     G+  P ++ +CT VLAR   LP
Sbjct: 88  FPEVAAEFAERLRD--RVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVLARDLRLP 145

Query: 107 ---SSLKNACLALNFS 119
                L +     +  
Sbjct: 146 LPNGKLSSLAAHFDVR 161


>gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
 gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
          Length = 203

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 55/212 (25%), Gaps = 42/212 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID ET        +G+  + +   + +   +  D    +   ++      +L   L +
Sbjct: 20  VAIDCET--------MGLNPHRD--RLCVIQMSGGDSNAHIIQVSKGQTEAPNLTAMLTN 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120
             V+ + H   F+    +   G         CT + ++          LKN    L   +
Sbjct: 70  PDVLKLFHFGRFDIAAMQNAFGAVTAP--VYCTKIASKMVRTYTDRHGLKNLLQELIGVD 127

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                           K    S     T  N          Y   DV    +L   L   
Sbjct: 128 IS--------------KQQQSSDWGSQTLTNAQLD------YAASDVLYLHKLRTELNAR 167

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
              E         +       D   +    +L
Sbjct: 168 LVREGR-------MEMAQACFDFLPMRAQLDL 192


>gi|254550635|ref|ZP_05141082.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 71

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672
           +      G  + L VHDE++ E        V  L    M         +PL+      + 
Sbjct: 9   LVRLIDEGQRL-LQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 65

Query: 673 Y 673
           +
Sbjct: 66  W 66


>gi|162146523|ref|YP_001600982.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 393

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 74/274 (27%), Gaps = 49/274 (17%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + L   A   + V + D        + L
Sbjct: 33  FVSIDTEFVRERTYW---------------PELCLVQLA-GQDEVVVVDTLAPGIDLAPL 76

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L D  V+ V H +  +  +F    G          T V A   G             
Sbjct: 77  GVLLDDPEVVKVFHAARQDLEIFLYLFGH--LPAALFDTQVAAMVAGFG----------- 123

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                   + G   +     G+     +  +  +     +    Y   DV   R +++ L
Sbjct: 124 -------DQVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLL 176

Query: 178 IPLSDGERDLWLL---DQTINDR-GYRIDLDLVLKLQ--ELIAQERKKLDEDIVKLTDGI 231
           +   + E  L  +      ++D   +R D + + +        +    +   I    +  
Sbjct: 177 LERLEREGRLDWVASDLAVLSDPATFRPDPETLWERMRPRTSNRRMLGVLRAITAWRERE 236

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
            +           L   + +++   +   + ++ 
Sbjct: 237 AQRVNVPRQ--RLLKDESLLEIAATAPADVDALA 268


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 40/153 (26%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQ---------------------AVITLCAYA 36
           S +  DIET    P    + + G     +                        +T     
Sbjct: 423 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKDKIGSFTTELTGITQQ 482

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRW 93
             D                 +   L D  +  +AHN+ F+    K   +   +  P    
Sbjct: 483 MLDSKGLYI-----KEGLEKIYDCL-DGKIA-IAHNAKFDFNFLKEQFRLNNMQFPRVTV 535

Query: 94  ICTSVLARTNGLP----SSLKNACLALNFSEHL 122
           I T V +R  G P      L++    L      
Sbjct: 536 IDTLVASR-IGFPGYKRHKLEDVASRLGVVYDP 567


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 29/148 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------ 54
           M    ID ET +P P+    V          + + +W   P   +D    S +       
Sbjct: 1   MKWAAIDFETANPSPMSACAVGLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHGITP 60

Query: 55  -------------SDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSV 98
                          L  +L D  V+  AHN+ F+  +         +++P   + CT  
Sbjct: 61  DQVADAPFFPKVYEQLKPWL-DGGVL-CAHNAGFDMKVLASCCSLYRLELPDAPYFCTVK 118

Query: 99  LAR----TNGLPSSLKNACLALNFSEHL 122
           L+R           L + C  +      
Sbjct: 119 LSRKVYPYL-KHHRLNDVCDYMGIQLDH 145


>gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
          Length = 203

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 26/178 (14%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   +  +    +     +S    +L++ L+DET+  + H    +    K  L     
Sbjct: 38  LCLIQLSTGNSDAHIVQLDRKSYEAPNLIKILKDETITKIFHYGRADMAHIKYYL--KTE 95

Query: 90  SKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   + T + ++         SL                   K LI  F    +D     
Sbjct: 96  TNNILDTKIASKLARSYSDNHSL-------------------KTLIKEFAN--VDISKQF 134

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            +            +YC  DV    ++   L  + + E  + L    ++    R+DLD
Sbjct: 135 QSSDFGGTLTPAQLKYCANDVIYLHQIHDELFKILERENRIKLYKDCLSFLKTRVDLD 192


>gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
 gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
          Length = 206

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+    +   + +   +       L   +  S   + +L   L 
Sbjct: 21  IAVDTET--------MGLITPRD--RLCVVQLSDGGPDEHLVRFSPDSDYAAPNLRALLA 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H   F+    +  LG+        CT + +R          LK     L   
Sbjct: 71  DPARLKLYHFGRFDIAAIRHYLGVVAAP--VYCTKIASRLIRTYTDRHGLKELVREL--- 125

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                             G   S     +     +      EY   DV     +   L  
Sbjct: 126 -----------------LGIELSKAQQSSDWGAPELSDAQREYAASDVRYLHRMKVELDK 168

Query: 180 LSDGERDLWLLDQTINDRGYR 200
             + E  + L     +    R
Sbjct: 169 RLEREGRMELAQACFDFLPAR 189


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL 105
              L   LR E +  VAHN+ F+ +      +   +DIP   + CT +LAR    
Sbjct: 293 LEQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHITFACTYLLARALHP 347


>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 906

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 70/280 (25%), Gaps = 40/280 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   +     ++ +  +L +  +D T   V H +  + I  ++  GI +   
Sbjct: 306 LMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYV--C 363

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   +R   +   SL++                    +  FC  + +         
Sbjct: 364 NLFDTGQASRILQMDRNSLEHL-------------------LQYFCGVTANKEYQSADWR 404

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                 +   +Y + D      ++  +      E     L   +  R   I    +   +
Sbjct: 405 LRPLPDE-MTKYAREDTHYLLYIYDLMRLRLVNESSGDDLLLEVCKRSNEI---CLQLYE 460

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSI 264
           + +      L +       G+  +      L +   L          +            
Sbjct: 461 KEL------LTDSSYLYIHGLKENDLSARQLAVLAGLYQWRDGVARAEDESTGYILPNKT 514

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
           L             L R     S    L      V +  R
Sbjct: 515 LLEIAKQMPVTTGRLKRTV--KSKNKFLEHYLGHVITTIR 552


>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 854

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 14/115 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D+E             +Y     + L   +  +    +     +  +   L +   
Sbjct: 263 EIAVDLE--------HHSYRSYT--GFLCLMQISDRENDWIVDLLALRDEI-EQLNEIFT 311

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H +  + +  ++   + I       T   ++    P   L N     
Sbjct: 312 DPKIVKVLHGAESDVVWLQQDFNVYI--VNLFDTFHASKLLDFPRHGLANLLEMY 364


>gi|68073827|ref|XP_678828.1| 3'-5' exonuclease [Plasmodium berghei strain ANKA]
 gi|56499420|emb|CAI00231.1| 3'-5' exonuclease, putative [Plasmodium berghei]
          Length = 383

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 69/245 (28%), Gaps = 28/245 (11%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDL 57
           +  + +DIE            +   +   +++      D  + ++D             L
Sbjct: 70  LKIIGLDIE-----------GYKIGKNGTVSIIQICAKD--IYIFDLYKCDNSYLFAKYL 116

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            +   +++++ V H+   +  +      I++       T + A T  L  S K       
Sbjct: 117 KELFENKSIIKVTHDCREDCSILFNQYNINLN--NIFDTQI-AYTLILKKSKKELY---- 169

Query: 118 FSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +        K   L              +          +    Y  +DV   + L  
Sbjct: 170 --QISYDDLLYKCLFLNNNHKIYFHKIISLNNKIYLKRPISKELIHYAVQDVLYLKPLML 227

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            LI +     ++   +   N+     D +    KL   + ++ + + E+           
Sbjct: 228 NLIEVLRNIENIIPRNDNENNTNKNYDKNGKHNKLSLDLCKDTQHIIEENNNFHLINYVI 287

Query: 235 SRQTY 239
            +   
Sbjct: 288 EKSQK 292


>gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
 gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
          Length = 388

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 65/260 (25%), Gaps = 31/260 (11%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           +   A++  D    L D          L     +  V+ V H +  +  +F   +G ++ 
Sbjct: 41  LVQLAFSGPDADAALVDPLADGIDLKPLYDLFLNPAVVKVFHAARQDLEIFS--VGQNVI 98

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 T V A   G               +   +    K   A   K S  +       
Sbjct: 99  PAPLFDTQVAAMVCGYG------------EQVSYETLARKIAKADIDKTSRFTDWSRRPL 146

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN----DRGYRIDLDL 205
           +          EY   DV   R++++ L            + + +        YR+D + 
Sbjct: 147 SEAQ------KEYALADVTHLRQIYENLSAQIAKSGRAAWVAEEMGVLNDPDTYRVDPEQ 200

Query: 206 V------LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
                             K+L     +         R        +  +  +      + 
Sbjct: 201 AWLRVKTRTSSAKFLAVMKEL-ARFREEYAQAQDVPRSRVYKDDAMLELASLKPATEDDL 259

Query: 260 TLKSILSHSNITQLAKDLIL 279
               +L          D IL
Sbjct: 260 GTARLLLREARRGPIADGIL 279


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 39/146 (26%)

Query: 3   KLFIDIETRSPQP------------------------LPKVGVWAYAEQAVITLCAYAWD 38
            +  D ET    P                        L K       + A IT       
Sbjct: 360 FVVFDFETTGLDPQVDEIIEIGAVKIKEGRIIDEYHTLIKPSGTISRKSAEITGITQEML 419

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
           +    +        +  + L++L D   + VAHN+ F+        KK LG D   K ++
Sbjct: 420 EGERAI------EEVLPEFLEFLEDS--ILVAHNANFDYRFLRLWIKKVLGKDWE-KPYV 470

Query: 95  CTSVLARTNGL--PSSLKNACLALNF 118
            T  LA++       SL +    L  
Sbjct: 471 DTLALAKSLLRLKSYSLDSVVKKLGL 496


>gi|254411454|ref|ZP_05025231.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196181955|gb|EDX76942.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 862

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 20/100 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWDRTEQSAMPSDL 57
            L++D E                    ++L     D      +   ++D  +   +  D 
Sbjct: 21  TLWLDTE----------VADWQTSNPRLSLIQILADPTDRTGDRAYIFDVLDNPDIVRDF 70

Query: 58  L-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           + Q + +  +  V HN+ F+        G    ++   CT
Sbjct: 71  VAQIMVNPNIEKVFHNASFDLKFL----GGKHQAQNVTCT 106


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 41/150 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLW-------------- 45
           M+ + ID ET + +      +     +   I         E V                 
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 46  ----------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKR 92
                     D  E   +   +  Y  +   + +AHN+ F+  + +   K   I +PS  
Sbjct: 53  IHGIRPHMVKDELEFDKIWQKIKDYFNNN--LVIAHNASFDMSVLRSTLKLYNIKMPSFE 110

Query: 93  WICTSVLA---RTNGLPSSLKNACLALNFS 119
           +ICT  L+    +N   + L      L + 
Sbjct: 111 YICTMKLSKNFYSNIDNARLNTINNFLGYK 140


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 23/142 (16%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +  DIET         + ++G     +   I   +   + E    +   + +++  +++
Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDRFSEFINPEEPIPYSIEQLTSITDEMV 517

Query: 59  -----------QYLR-DETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN 103
                      ++L      + VAHN+ F+    KK    LG+       + T  L+   
Sbjct: 518 MHAPTVDVILPKFLEFCGDDIVVAHNAAFDTGFIKKNAKDLGMKFD-NTIMDTMTLSHVL 576

Query: 104 GLPSS---LKNACLALNFSEHL 122
                   L   C ALN     
Sbjct: 577 LPELGKFTLDRVCKALNVKNEH 598


>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
          Length = 898

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D+E              Y    ++ L   +  ++   +            L +   
Sbjct: 254 EIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFA 303

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFSE 120
           D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK      + F  
Sbjct: 304 DPSIIKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASALQLPKKSLKFLLHEYVGFDA 361

Query: 121 HLT 123
              
Sbjct: 362 DKQ 364


>gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
 gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
          Length = 370

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 84/313 (26%), Gaps = 60/313 (19%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T       K+G+    +   + L       +PV + D +          
Sbjct: 26  LVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVAITDLSP-------FW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L D+ ++ + H+   +  +F      +        + + A   GL   L         
Sbjct: 69  QLLTDQNIVKLVHSCSEDLEVFAHYG--ECQPSPLFDSQIAASFAGLGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +   C           T   +        +Y   DV    +L+ +L 
Sbjct: 118 ---------GYAKLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAANDVFYLYQLYPQLQ 168

Query: 179 PLSDGERDLWLLD---QTINDRGYRI---DLDLVL-----KLQELIAQERKKLDEDIVKL 227
                +  +  L    Q + +    +   D   +      +L        K L +  +  
Sbjct: 169 QKLAADNRVEWLFEEGQRMTEGRMSLPAGDSVYLKVKNAFQLSSQQLAYLKVLAKWRLAK 228

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +          + L            TL   L+  N     +  I  +   +  
Sbjct: 229 AVSRNLALGFVVKDHALIALA------KKQPTTLAE-LNSLNDLTDQEKRIHGKDLLTVM 281

Query: 288 AILKLNTLSEAVS 300
           A   L  L E V 
Sbjct: 282 ATADLINLPEEVD 294


>gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 212

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 31/183 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D E         +G+    +   + +         V L            L     
Sbjct: 30  RLAVDCE--------MMGLNPRRD--RLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFE 79

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  ++ + H +  + +  +  LGI +  +   CT + +                      
Sbjct: 80  NPEIVKIFHFARMDSLFLRYRLGISL--ENVFCTKIAS----------KLAR-------T 120

Query: 123 TKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + G K LI  F    ID               +   EY   DV+    L ++L  + 
Sbjct: 121 YTDKHGLKDLIKEFYDEVIDKKNQSSDWG-KKILTKDQIEYASGDVKYLISLEQKLTEIL 179

Query: 182 DGE 184
             E
Sbjct: 180 VRE 182


>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 700

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 17/128 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQYL 61
           L  D+E+ +     ++            L   + D     + D            L    
Sbjct: 258 LAFDVESYNKSKYTQLT----------CLLQLSTDHGMAYVIDPLAPGVFEEVGGLAPIF 307

Query: 62  RDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119
            D  ++ V H+    +     +  GI +       T   A+   L    L   C      
Sbjct: 308 ADPDIVKVGHSIGGLDVRSLHRDFGIFV--INAFDTYEAAKVLCLESHGLAAVCEHYGMK 365

Query: 120 -EHLTKME 126
              L K  
Sbjct: 366 YTDLYKSL 373


>gi|288923665|ref|ZP_06417768.1| hypothetical protein FrEUN1fDRAFT_7466 [Frankia sp. EUN1f]
 gi|288344980|gb|EFC79406.1| hypothetical protein FrEUN1fDRAFT_7466 [Frankia sp. EUN1f]
          Length = 138

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETP 637
              +G      +VQ  + ++         +     G +IVL +HDE++   P
Sbjct: 42  AAAWGRFARNAVVQGSAAELFKAWAVTVRQLLVPLGGEIVLCLHDELLLHVP 93


>gi|70949124|ref|XP_744002.1| 3'-5' exonuclease [Plasmodium chabaudi chabaudi]
 gi|56523765|emb|CAH76355.1| 3'-5' exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 383

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 49/186 (26%), Gaps = 27/186 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDL 57
           +  + +DIE            +       +++      D  + ++D             L
Sbjct: 70  LKIIGLDIE-----------GYKIGRNGTVSIIQVCAKD--IYIFDLYKCDNSYLFVKYL 116

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            +   ++ ++ VAH+   +  +      I++       T + A    L  S K       
Sbjct: 117 KELFENKNIIKVAHDCREDCSILFNQYNINLN--NIFDTQI-AYNLILKKSKKELY---- 169

Query: 118 FSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +        K   L              D          +    Y  +DV   + L  
Sbjct: 170 --QISYDDLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLML 227

Query: 176 RLIPLS 181
            L+   
Sbjct: 228 NLVDTL 233


>gi|313631118|gb|EFR98659.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 56

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622
             Y         ++ TYGGKL ENIVQAI+RD L   ++     G 
Sbjct: 9   ICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAGI 54


>gi|296815198|ref|XP_002847936.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
 gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
          Length = 810

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 14/124 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              Y    ++ L   +  ++   +            L +  
Sbjct: 266 KEIAVDLE--------HHDAHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 315

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL-NFS 119
            D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK        F 
Sbjct: 316 ADPSIVKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASMLQLPKKSLKFLLQQYVGFD 373

Query: 120 EHLT 123
               
Sbjct: 374 ADKQ 377


>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 240

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 40/165 (24%), Gaps = 55/165 (33%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M ++ +D ET      S   + ++G                             + +MP+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAIELWNH---------VATGETYHVYINPERSMPA 51

Query: 56  DLL-------QYLRDETVM----------------------------CVAHNSLFERILF 80
           +           L                                   V HN+ F+    
Sbjct: 52  EAFGVHGIGPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVGDARLVIHNAAFDMKFL 111

Query: 81  KKTLGI-DIPSKRWI---CTSVLA--RTNGLPSSLKNACLALNFS 119
              LG   +P         T  +A  R  G P+SL   C   N  
Sbjct: 112 NAELGWMGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNID 156


>gi|154278361|ref|XP_001539994.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 807

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y    ++ L   +  D+   +            L +   
Sbjct: 250 EIAIDLE--------HHDAHSY--HGLVCLMQLSTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
           D  ++ V H S  + I  ++ LG+ I       T   A     P  SLK      
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPKKSLKFLLEKF 352


>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           DX-1]
 gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 232

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    PL         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDPLRG---DRLVEIGCVEIFNRMPTGRTYHRYLNPERDMPAEAFAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW 93
               +   D+   + +  + L+++ D+    V HN+ F+         +     +P  R 
Sbjct: 58  GLSAEFLADKPLFAQVADEFLEFIGDD--PLVIHNASFDIGFINAELSRLSRAPVPRDRL 115

Query: 94  ICTSVLARTNGLPSS--LKNACLALNFS 119
           + T +LAR      S  L + C      
Sbjct: 116 VDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
          Length = 394

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID E      +     +       ++L   ++  E   + D        S + + +
Sbjct: 22  KFIAIDTE-----FIRNNLTYY----PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKMM 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ ++ V H+   +                   T V A                     
Sbjct: 72  LNQGIIKVFHSCRQDIESLLTVF--KCVPTPIFDTQVAAMFC-----------HYYHDFI 118

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    IA     + +S       +           Y   DV    +L++ L   
Sbjct: 119 GYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAINDVVYLYDLYQILCNK 172

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 173 LEESNRMSWFQEEME 187


>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 386

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 63/254 (24%), Gaps = 40/254 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +   +   L + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLVQMASPTLEVLVDPLAKGLDLTP-LFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ V H +  +  +    LG  +       T V A   G   S              
Sbjct: 69  NPDVVKVFHAARQDIEII-YHLG-GLIPHPIFDTQVAAMVCGFGDS------------IS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +    +  K S  +                   Y   DV   R+++  L    +
Sbjct: 115 YDQLVQRIKNVQIDKSSRFTDWSRRPLTEKQLD------YALADVTHLRDVYLALKAQLE 168

Query: 183 GERDLWLLDQTI------NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS-- 234
            E     L + +             D   +     L       + + +    +   RS  
Sbjct: 169 REGRSLWLTEEMDILESRETYDMHPDDAWLRLKSRLRKPTELAILKFVAAWREREARSRN 228

Query: 235 -SRQTYALRMYLFL 247
             R        +F 
Sbjct: 229 VPRSRVLKDDAIFE 242


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC---AYAWDDEPVKLW-----D 46
           M  + ID ET + +      V  A+ E   +      L       +    +++      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
             +    P  + ++L D    + +AHN+ F+  +        G  +P     CT  +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSSLKNACLALNFS 119
                    L      L   
Sbjct: 121 VFPDPAGHGLAKVASRLGIR 140


>gi|84662629|ref|YP_453594.1| putative DNA polymerase III epsilon subunit [Xanthomonas phage OP1]
 gi|84570678|dbj|BAE72741.1| putative DNA polymerase III epsilon subunit [Xanthomonas oryzae
           phage OP1]
          Length = 279

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 33/207 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWA-------YAEQAVITLCAYAWDD-EPVKLWDR------ 47
             L IDIET S   +   G+           +   I      W     V   D       
Sbjct: 25  KILHIDIET-SMMLVQAWGIGKQFIAYDDIVQDWNILSYCAKWHGVNTVLYDDLREQSNP 83

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNS-LFE-RILFKKTLGIDIPSK---RWICTSVLART 102
           T+   + + L + L +  V  VAHN   F+ R +  +     +P     R + T + +R 
Sbjct: 84  TKDKRLCTGLAKVLTEADVA-VAHNGKKFDIRKIRARMSMNKLPPIPDTRIVDTLIESRK 142

Query: 103 NGLP--SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                   L                     L             +   +  ++ AW+   
Sbjct: 143 CFAHTSHKLAYLSTHFGDD----------GLRKLDHGKFAGKALWRECQKGNLAAWEEMK 192

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDL 187
           +Y   DV A   ++  L     G ++L
Sbjct: 193 KYNVVDVLAMESMYSELRGWFQGAQNL 219


>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
 gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
          Length = 389

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 55/240 (22%), Gaps = 45/240 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D E      +       Y  Q  + L  +  D   V L D      +   L + L
Sbjct: 49  KEVALDTE---ADNM-------YHYQTRVCLLQFLID-GEVWLVDLMTPLPL-KPLWEKL 96

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN-ACLALNFS 119
              T   V H S F+  L     G     K    T + A+        L          +
Sbjct: 97  A--TKHLVMHGSDFDLRLLHDLCGF--RPKSLFDTMLAAQLLNRQRIGLAALLSEHFGVT 152

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                                         +      +L  +Y   DV     L   L  
Sbjct: 153 LDK--------------------GGQKANWSKRPLTPKLL-DYASLDVWHLPALRDILTR 191

Query: 180 LSDGERDLWLLDQTINDR------GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                  +  ++Q    +      G+  D +   ++          +             
Sbjct: 192 ELSRLGRMEWMEQQCRRQIESGSIGFPDDDEHAWRIGPADRLRGHGIGALHAIWHWREEW 251


>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P  K G     E   + L                       A+A  
Sbjct: 1   MREIVLDTETTGFDP--KTG-DRMVEIGAVELFNHMPTGRTYHQYINPQRDMPEGAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
                 L D    + +    L+++ D     V HN+ F+       LG      IP  + 
Sbjct: 58  GLSEEFLKDYPVFADIADAFLEFIGDA--KLVIHNASFDVPFLNAELGWCKRRQIPMDQS 115

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           I T ++AR    G  +SL   C      
Sbjct: 116 IDTLLIARKKFPGAGNSLDALCRRFGID 143


>gi|149408180|ref|YP_001294614.1| hypothetical protein ORF021 [Pseudomonas phage PA11]
          Length = 255

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 29/195 (14%)

Query: 6   IDIETRSPQP------LPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSA--MPSD 56
           IDIET              +G     +   I   A      + +   +  +     +  +
Sbjct: 7   IDIETAPKVAYVWRFFKEMIGAKQVLDHGHIMSFAAKKLGSDDIIYVENRKDDDKYITQE 66

Query: 57  LLQYLRDETVMCVAHNS-LFERI-LFKKTLGIDIPS---KRWICTS-VLARTNGLPSS-L 109
           L+  L D  +  VAHN   F+   +  + L   +      + + T  V  R      + L
Sbjct: 67  LISVLDDADI-VVAHNGDKFDLPTINGRALVHGLKPPSPYKTVDTLKVAHREFKFERNNL 125

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +     L  +      +EG A    F         +      + +AW    +Y  +DV  
Sbjct: 126 EYLAHVLGCAP-----KEGHAKFPGF-------ELWLECLRQNEEAWAEMRKYNIQDVLT 173

Query: 170 TRELFKRLIPLSDGE 184
             E++ ++ P     
Sbjct: 174 LEEVYTKMRPWIRNH 188


>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 388

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 46/193 (23%), Gaps = 35/193 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E          G + Y     + L   +       + D  +   +   L     D
Sbjct: 29  ISIDTE--------SSGYYTYFS--KVCLIQIS-AKGKNYIIDPLKLQNL-DGLGNLFED 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
           + ++ + H+++ +    KK  G          T   +R       SL       +     
Sbjct: 77  KKILKIFHSAIDDIKALKKDFGFKFH--NIADTGFSSRLLDHEQYSLTYLVDYYH----- 129

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                    I    K    +              +   +Y   D      +++++     
Sbjct: 130 --------KIKLSKKEQKSNWEKRP-------LEKSQLQYAALDTVYLETIWEKMKEELT 174

Query: 183 GERDLWLLDQTIN 195
                        
Sbjct: 175 KRNLYEEAFSEFE 187


>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 50/183 (27%), Gaps = 47/183 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDE 64
           +D+ET          V   A +  + + A A DD  PV                + L   
Sbjct: 780 LDVETT-LFDRALCLVQLAAPEYTVVIDARAVDDLGPVS---------------ELLASR 823

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNA-CLALNF 118
            V+ + HN+ FER +F+K   + +  +    T  ++R            L       L  
Sbjct: 824 AVVKIIHNAQFERSVFRK---LGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                +                       +        Q   +Y   D E    L +R  
Sbjct: 881 ELDKHE---------------------QRSDWTQRPLTQRQLDYAALDAEVLLALHERFT 919

Query: 179 PLS 181
              
Sbjct: 920 REL 922


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 42/148 (28%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++  D ET    P          E   I L                       A A  
Sbjct: 1   MREIIFDTETTGFDP---ASGDRLVEIGCIELFNRVPTGRTFHAYYNPQRSMPAAAEAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
                 L D+        +LL +L D     VAHN+ F+       L +    ++   R 
Sbjct: 58  GLSDGFLRDKPLFGHGVQELLAFLEDS--HLVAHNARFDFGFLNHELKLCGLPEVSMDRM 115

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
           I T  +AR    G   SL   C      
Sbjct: 116 IDTVAIARQIHPGAKHSLDALCTRYGID 143


>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
 gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
          Length = 383

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 52/193 (26%), Gaps = 32/193 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A  D    +    E   +    L  LR
Sbjct: 22  FITVDTE------FMRETTYW----PRLCLIQAASADHAGIIDPMAEGLDL-EPFLDLLR 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  ++ V H    +  +F +   +    +    T V A   G                  
Sbjct: 71  DPKIIKVFHACRQDVEIFVR---LGAMPRPMFDTQVAAMAAGFG---------------- 111

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +     +L+ +  +  +D        A    +      Y   DV     L+ +L     
Sbjct: 112 -EQVAYDSLVRQMLRVELDKGSRFTDWARRPLSDSQL-VYALGDVTHLAALYPKLRDRLK 169

Query: 183 GERDLWLLDQTIN 195
            E  L  +   + 
Sbjct: 170 KEGRLDWVMSEME 182


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA-RTNG-- 104
             +     +++ +E+V+ VAHN+ F+    ++     G+    +  + T +L+   +   
Sbjct: 593 GPVLRAFSRFIGEESVL-VAHNAAFDMGFLRRAQARAGLAF-PQPVLDTLLLSVYLHDHS 650

Query: 105 LPSSLKNACLALNFSEHL 122
              +L+     L      
Sbjct: 651 PDHTLEGVAERLGVEVQK 668


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L    V     A++          + +    W        
Sbjct: 1   MNFIAMDFETASGKRYSACSLALTIVRNNQIADEFYTL-----INPQTPFFWRNVQIHGI 55

Query: 46  ---DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D       P     ++       + +AHN+ F+  + K   +  GI+ P+ + + T 
Sbjct: 56  HERDVANAPTFPEVWEHIKGFYTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115

Query: 98  VLARTNGLPSS---LKNACLALNFS 119
           V +R      S   L   C ALN  
Sbjct: 116 VSSRRLLPGLSNYKLNTVCAALNID 140


>gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
          Length = 203

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 26/178 (14%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   +  +    +     +     +L + L D +++ + H    +    K  L     
Sbjct: 38  LCLIQISTGNSDAHIIQLDREKYDAPNLNKVLSDASIIKIFHYGRADMAHIKHYL--KTE 95

Query: 90  SKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           +   + T + ++         SL                   K LI  F    +D     
Sbjct: 96  TNNILDTKIASKLARSYSDSHSL-------------------KTLIKEFMN--VDVSKQF 134

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            +     +      +YC  DV    ++ + L  +   E+ + L    +     R+DLD
Sbjct: 135 QSSDFGGELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSCLAFLKTRVDLD 192


>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
           biovar Abortus 2308]
          Length = 385

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 44/167 (26%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    + +      +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDELAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|90424784|ref|YP_533154.1| exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90106798|gb|ABD88835.1| Exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 314

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC-----AYAWDDEPVKLWD--- 46
           MS L ID ET + +      +  A+ E+  I      L       +   +  V       
Sbjct: 1   MSILAIDFETANEKRSSPCALGLAWIERGQIVRREYRLIKPKEMRFGVFEAKVHGLSPSE 60

Query: 47  RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS-VLAR 101
             +    P  + ++L D ++ + +AHN+ F+  +        GI IP   ++C+  V +R
Sbjct: 61  VKDAQEFPEVISEFLSDIQSGLLLAHNAQFDVDVLCATLALYGIAIPRFSFLCSQRVASR 120

Query: 102 TNGLPSSLK--NACLALNFS 119
                 SLK       L  S
Sbjct: 121 VWSDEKSLKLSALGEKLGIS 140


>gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
 gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
          Length = 177

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCA----YAWDDEPVKLWDRTE 49
           M+ + ID ET      S   L    V     A+Q   +L      ++W +  V      +
Sbjct: 1   MNFVAIDFETANPKRYSACSLALTVVKNNQIADQFY-SLIKPDTDFSWRNIQVHGITEKQ 59

Query: 50  QSAMPS--DLLQYLRD---ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
               PS  +L  ++++      + VAHN+ F+  +  +      I +P  + + T 
Sbjct: 60  VQNAPSFPELWPHIQNFFTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115


>gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
 gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
          Length = 231

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETR-----SPQPLPKVG-VWAYAEQAVITLC-------------AYAWDD-E 40
           M ++ +D ET      S   + ++G V  Y                      A+A     
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQRAMPEAAFAVHGLG 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
                D      + +++ Q   D       V HN+ F+       LG      +P ++ I
Sbjct: 61  D----DFLRNKPLFAEIAQEFLDFVLDAKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAI 116

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +AR    G P+SL   C      
Sbjct: 117 DTLAIARQKFPGSPASLDALCRRFQID 143


>gi|195455204|ref|XP_002074609.1| GK23167 [Drosophila willistoni]
 gi|194170694|gb|EDW85595.1| GK23167 [Drosophila willistoni]
          Length = 1008

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 80/290 (27%), Gaps = 42/290 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYL 61
           + +D E      L   G         ITL           L+D     AM SD  L   L
Sbjct: 557 ISLDCE---GINLGLKG--------EITLIEIGTGRGEAFLFDVQSCPAMVSDGGLKTLL 605

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----------SLK 110
             E V+ V H+   +        GI +       T                      SL 
Sbjct: 606 EHEQVIKVIHDCRNDAANLYLQFGILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLN 663

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           + C   N   +  K +     I R  +      P                 Y   DV   
Sbjct: 664 SLCEQYNAPCNPIKDQL--KQIYRRDQKFWAKRPLTRE----------MMLYAAGDVLVL 711

Query: 171 --RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL--KLQELIAQERKKLDEDIVK 226
              +LF  L      E    L +        +I  + V   K Q  ++ E   L + + +
Sbjct: 712 IHDQLFGNLARQIKPENRQLLSELCTEQILMQIKPNEVKIRKKQRKVSTEVSDLKQKLGQ 771

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            +  I+ S+R+   LR         + +       K +    +     KD
Sbjct: 772 SSKSIVLSNREIRLLRYMDLTEEEKERLKGYYKVAKKLEKMESAGNPNKD 821


>gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 177

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCA----YAWDDEPVKLWDRTE 49
           M+ + ID ET      S   L    V     A+Q   +L      ++W +  V      +
Sbjct: 1   MNFVAIDFETANPKRYSACSLALTVVKNNQIADQFY-SLIKPDTDFSWRNIQVHGITEKQ 59

Query: 50  QSAMPS--DLLQYLRD---ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR 101
               PS  +L  ++++      + VAHN+ F+  +  +      I +P  + + T   ++
Sbjct: 60  VQNAPSFPELWPHIQNFFTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTLRTSK 119

Query: 102 TN---GLPSSLKNACLALNFS 119
                     L   C  LN  
Sbjct: 120 KFFKDLENHKLDTICNNLNID 140


>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
 gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
          Length = 362

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 90/306 (29%), Gaps = 31/306 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           + +D E        +V  +       + L    +D E V L D        P   +  L 
Sbjct: 15  VALDTE------FMRVSTYF----PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLA 61

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNAC-LALNFS 119
           +  V+ + H+   + ++F +    D   +  I T ++AR    G  + L       LN  
Sbjct: 62  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNVE 119

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LI 178
                   G        +   D              W L   Y   + E  +  +++ + 
Sbjct: 120 IDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWEKAVS 170

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +         Q  +     +D+    KL  L     + L +    +      +    
Sbjct: 171 DDCELALAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLAL-SY 229

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                +L+     +    +   L+  L+ + +    K ++     +   +        E 
Sbjct: 230 IVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRVSPNDYPKPIER 288

Query: 299 VSSDGR 304
           +S D R
Sbjct: 289 ISEDPR 294


>gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62]
 gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62]
          Length = 385

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 43/200 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    DE   L D  E     
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAYPGEGDENAVLVDPLEDGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L    RD  V+ V H +  +  +F   +   I       T V A   G          
Sbjct: 67  ASLYDLFRDPNVVKVFHAARQDLEIF--FVDEGIIPAPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K   A   K S  +       ++         +Y   DV   RE++
Sbjct: 117 ----EQVGYETLVRKIAKAPLDKSSRFTDWSRRPLSDAQ------KKYALGDVTYLREIY 166

Query: 175 KRLIPLSDGERDLWLLDQTI 194
           + L            + + +
Sbjct: 167 EFLADKLAKNNRAKWVAEEM 186


>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
 gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
          Length = 701

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 21/161 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E            +   +     L   +  ++   +     +S +   L +  
Sbjct: 139 KEFAVDLE---------HHSYRSFKGFTC-LMQVSTREKDFVVDVLALRSLVRDALGKAF 188

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D   + V H +  +    +K  GI +       T   AR   LPS  K     L     
Sbjct: 189 ADPNTLKVMHGADNDVQWLQKDFGIFV--SCLFDTGQAARVLELPS--KALAYLLQH--- 241

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                 G     +F        P      ++ +    +  Y
Sbjct: 242 ----YCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLY 278


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQPLP-----KVG-VWAYAEQAVITLC-------------AYAWDDEP 41
           M ++ +D ET    PL      ++G V  Y                      A+A     
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPERDMPAEAFAVHGLS 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
            +   D+   + +  + L ++ D     V HN+ F+         +     IP +R + T
Sbjct: 61  AEFLADKPLFAQVVDEFLDFIGDA--PLVIHNASFDAGFLNAELARLSRAAIPRERLVDT 118

Query: 97  SVLARTNGLPSS--LKNACLALNFS 119
            +LAR      S  L + C      
Sbjct: 119 LLLARRKHPGVSNRLDDLCSRYAID 143


>gi|327197775|ref|YP_004301473.1| gp140 [Brochothrix phage A9]
 gi|299810375|gb|ADJ53174.1| gp140 [Brochothrix phage A9]
          Length = 700

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 83/349 (23%), Gaps = 108/349 (30%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLL 58
           M  +  D ET + +   K           I   + +W++                P +L 
Sbjct: 230 MDAIGWDYETNTLRGEMKGS--------KILTISLSWEEGRAVTIPVEHPEYPHTPENLK 281

Query: 59  QY------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +               VAHN  F+  + K+ +   +     + T V      +    ++ 
Sbjct: 282 EVKSLIGKFLIANTYKVAHNGQFDMRISKQLIDQKLTVANSLDTQV-GYYLTVSQKTED- 339

Query: 113 CLALNFSEH---------------LTKMEEGKALIAR----------------------- 134
             A                       K    K L+ +                       
Sbjct: 340 --AFGLKTIVYQYTDMGGYEDPLDEYKEWFLKKLLKKTARIRDILARPVEKRTPTMLRNL 397

Query: 135 ----------FCKGSIDSPPYDCT----------------------RANHVQAWQLFGEY 162
                     F   S  +  +                                ++L   Y
Sbjct: 398 EADSDFEYPEFMNDSDKNIAHKWASQLLSNNTLKYTQVRNEQDGGNFDYTWIPYRLLSMY 457

Query: 163 CKRDVEATRELFKR-LIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQ 210
              DV+A R + ++ L         L+ L              I   G  ++ + +++++
Sbjct: 458 AGGDVDACRRINRKMLSDALANNDKLYDLYVNHYPVLTDTLADIEVDGMYVNKERLIEIK 517

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           +   ++ K L               ++    +  L+   G+        
Sbjct: 518 DAFDKQIKALRA-----FLSKEPIIQKVEKQKEKLY-ALGLKEKAKPPK 560


>gi|296204096|ref|XP_002749184.1| PREDICTED: DNA polymerase subunit gamma-1 [Callithrix jacchus]
          Length = 1229

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 89/341 (26%), Gaps = 37/341 (10%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 831  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 889

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   KV      Y  G 
Sbjct: 890  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKVFNYGRIYGAGQ 949

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L +     K+   +   +    +           + + + +     L
Sbjct: 950  PFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRY---------RLSEEGEWLVRELHL 1000

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFA--CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
                       +  L K   E        +         +      +  + +      +P
Sbjct: 1001 PVDRIEGGWISLQDLRKVQREASRKSRWKKWEVVAERAWMGGTESEMFNKLESIATSDIP 1060

Query: 564  SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN 620
             +  L     +     +        R           +VQ+ + D   ++   MK   + 
Sbjct: 1061 CTPVLGCRISRALEPSVVQGEFMTSR--------VNWVVQSSAVDYLHLMLVAMKWLFEE 1112

Query: 621  ---GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                    +++HDE+     +   +           L   M
Sbjct: 1113 FAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1153


>gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
 gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
          Length = 213

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 28/183 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S L +D E         +G+    +   + L   + +            ++    + +  
Sbjct: 29  SYLAVDTE--------AMGLIHGRD--RLCLIQISNEFHLTSCIKIELNNSDSPHIKKLF 78

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  +M + H + F+    K    ++I +    CT + +                     
Sbjct: 79  EDNKIMKIFHYARFDVAALK--CNLNINTNNIFCTKIAS----------KLARTYTHKH- 125

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K LI       +D         +         +Y   DV+   E  ++L  + 
Sbjct: 126 -----GLKELIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIIL 180

Query: 182 DGE 184
           + E
Sbjct: 181 ERE 183


>gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 204

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 35/126 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA------------------------VITLCAY- 35
           M  LF D ET S +P     +      A                         I   +  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFSLE 60

Query: 36  -AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSK 91
             ++    + +    +  +P     ++       + HN  F+    K     LG D   K
Sbjct: 61  KLYELSEGQYF----EDLVPEFFKDFIE--ADFLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 92  RWICTS 97
              CT 
Sbjct: 115 HSFCTM 120


>gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
 gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
          Length = 377

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 34/190 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E      +     +  A      L     D     L D  T  +  P  L   L
Sbjct: 26  FVALDTE-----FMRVDTFYPIAG-----LIQIG-DGVRAYLIDPLTIDNWQP--LAALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L  +  
Sbjct: 73  ENPAVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQAVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   +    Y   D     E++ RL P  
Sbjct: 129 DIELPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAEVYTRLRPRL 172

Query: 182 DGERDLWLLD 191
             E+  W+LD
Sbjct: 173 SDEKYAWVLD 182


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 25/137 (18%)

Query: 6   IDIETRSPQPLP-----KVGVWAYAEQAVI-------------TLCAYAWDDEPVKLWDR 47
           +D ET    P       ++G+   A   ++                 +      V+L   
Sbjct: 20  VDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDIGAQWIHHISAVELIHA 79

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKR--WICTSVLART 102
            E   +  +L   L     + VAHN  F+        + LG DIP      +CT  L+R+
Sbjct: 80  PEFEGIARELRDLLA--GRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMKLSRS 137

Query: 103 NGLPSSLKNACLALNFS 119
                SL + C      
Sbjct: 138 LIGVGSLADCCREFGID 154


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------- 48
           M ++  D ET          +   G+    +           +    K+           
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60

Query: 49  --------EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK---RWICT 96
                     + +  +++ +  D     VAHN+ F+      +   + +P     R I T
Sbjct: 61  DEFLKDKPPFADVAQEIVDFFGDAR--WVAHNATFDIGFINAEFERLGLPPIGSDRVIDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             LAR      P+SL   C      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVD 143


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 25/139 (17%)

Query: 4   LFIDIETR-----SPQPLPKVGV--WAYAEQAVITL---------CAYAWDD-EPVKLWD 46
           L ID ET      S   +    V        A   +            A     P  + D
Sbjct: 8   LAIDFETANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVVD 67

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
             E   +   +   L     + +AHN+ F+  + +    T G+ +P   ++CT V AR  
Sbjct: 68  APEFPDIWDAMRPELE--GAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAARRA 125

Query: 104 GL---PSSLKNACLALNFS 119
                   L +        
Sbjct: 126 WPDLEKHRLNHLARQFGIE 144


>gi|149690747|ref|XP_001503097.1| PREDICTED: similar to DNA polymerase subunit gamma-1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Equus
            caballus]
          Length = 1219

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/397 (10%), Positives = 99/397 (24%), Gaps = 44/397 (11%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    +    R G           LP
Sbjct: 773  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-PDYDEEGRYGAI---------LP 822

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + A 
Sbjct: 823  QVVTAGTITRRAVEPTWLTASNARP-DRVGSEMKAMVQAPPGYVLVGADVDSQELWIAAV 881

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   K+      Y  G   
Sbjct: 882  LGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQPF 941

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    + L  + +          +    +L  
Sbjct: 942  AERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGE---------WLVRELDLPV 992

Query: 508  KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567
                     +  L + +    +              A +         +   I    +  
Sbjct: 993  DRTEDGWVSLQDL-RKIQREASRKSNWKKWEVVAERAWMGGTESEMFNKLESIATSDTPC 1051

Query: 568  LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN---G 621
                  +   +   +A                 +VQ+ + D   ++   MK   +     
Sbjct: 1052 TPVLGCRISRALEPSAVQGEFMTSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFAID 1106

Query: 622  YDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                +++HDE+     +   +           L   M
Sbjct: 1107 GRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1143


>gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1]
 gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 377

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 20/224 (8%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E         + V  +   A +       D +   L D    +A    L   L 
Sbjct: 26  FVALDTE--------FMRVDTFYPIAGLLQVG---DGKRAYLIDPLTINAW-QPLAALLE 73

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ V H    +  +  +  G          T + A    L  S+      L      
Sbjct: 74  NPAVLKVLHACSEDLEVLLRLTGS--LPAPLFDTQLAAAYLNLGFSMGY--SRLVQEVLG 129

Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHV-QAWQLFGEYCKRDVEA-TRELFKRLIP 179
            ++ +G+       +   D+   Y    A H+ + +         D  A   E    L+ 
Sbjct: 130 IELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKLSDDKFAWVLEDGAELVA 189

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               E D + + +      +++    +  L+EL A   ++    
Sbjct: 190 NLRRETDPYEVYREA-KLAWKLSRAQLAVLRELCAWREREARAR 232


>gi|303310683|ref|XP_003065353.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 766

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y    ++ L   +  ++   +            L +  
Sbjct: 248 KEIAVDLE--------HHDAHSY--HGLVCLMQISTREKDWIVDTLLPWREELQILNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   +     P  SLK  
Sbjct: 298 ADPRILKVLHGSSMDVIWLQRDLGLYL--VGLFDTYHASVALNYPKKSLKFL 347


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQAVI-TLCAYAWDDE--------------PV 42
           M    +D ET    S   + +VG+    E   I  +     +                  
Sbjct: 1   MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS-- 97
            + D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T   
Sbjct: 61  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 118

Query: 98  -------VLARTNGLPSSLKNACLALNFSEH 121
                  + +   G+                
Sbjct: 119 LKICFPSLPSYQLGM------VSSHFGLEHD 143


>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
 gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
          Length = 955

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 44/155 (28%), Gaps = 38/155 (24%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQ------------------AVITLCAYAWDD 39
           M    +D ET    S   + +VG+                          IT       D
Sbjct: 1   MKFAVLDFETTGTQSADDIIQVGLAIIDHDNSISRVYGSYVNPGRSIPPFITGLT-GITD 59

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
           + VK  D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T
Sbjct: 60  DDVK--DAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDT 115

Query: 97  S----VL-----ARTNGLPSSLKNACLALNFSEHL 122
                ++     +   G  SS              
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFELAHDRPHQADS 150


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 26/145 (17%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQAVI-TLCAYAWDDE--------------PV 42
           M    +D ET    S   + +VG+    E   I  +     +                  
Sbjct: 1   MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
            + D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T   
Sbjct: 61  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 118

Query: 100 ARTNGLPSS---LKNACLALNFSEH 121
            +      S   L            
Sbjct: 119 LKICFPSLSSYQLGMVSSHFGLEHD 143


>gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10]
 gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10]
          Length = 386

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 29/192 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +  V+       + L   A  +  V +    E         + + 
Sbjct: 22  YVAVDTE------FMRETVYW----PQLCLIQAAAGETEVIIDPLAEG-IDLEPFWELMA 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE ++ V H +  +  +F    G  +       + V A   GL  S              
Sbjct: 71  DERIIKVFHAARQDLEIFFHQGGDALIPHPMFDSQVAAMALGLGDS------------IA 118

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   L     KG   +       ++         +Y   DV   R+L+  ++   +
Sbjct: 119 YDALVRTLLNRPIDKGPRFTDWSRRPLSDAQ------TKYAIADVTHLRDLYPMMVERLE 172

Query: 183 GERDLWLLDQTI 194
                  L   +
Sbjct: 173 KTGRTEWLAGEM 184


>gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius CECT 5713]
          Length = 177

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGVWA--YAEQAVITLCA----YAWDDEPVKLWDRTE 49
           M+ + ID ET      S   L    V     A+Q   +L      ++W +  V      +
Sbjct: 1   MNFVAIDFETANPKRYSACSLALTVVKNNLIADQFY-SLIKPDTDFSWRNIQVHGITEKQ 59

Query: 50  QSAMPS--DLLQYLRD---ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
               PS  +L  ++++      + VAHN+ F+  +  +      I +P  + + T 
Sbjct: 60  VQNAPSFPELWPHIQNFFTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115


>gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 209

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 38/211 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+  + +   + +   +       L      S   + +L   L 
Sbjct: 24  VAVDTET--------MGLITHRD--RLCVVQISDGKGDQHLVRFAPDSDYSAPNLKAVLS 73

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H   F+       LG  + +    CT + ++          LK     L   
Sbjct: 74  DPNRLKIYHFGRFDIAAILYYLG--VMAAPVYCTKIASKLVRTYTDRHGLKELVREL--- 128

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L     K    S       ++  +      EY   DV     L ++L  
Sbjct: 129 -----------LGQDISKQQQCSDWGGEKLSDAQR------EYAASDVRFLHGLKEKLDI 171

Query: 180 LSDGER--DLWLLDQTINDRGYRIDLDLVLK 208
               E+  +L            ++D+    +
Sbjct: 172 RLKREKREELAQACFDFLPTRAKLDIAGWSE 202


>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
           Silveira]
          Length = 772

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y    ++ L   +  ++   +            L +  
Sbjct: 248 KEIAVDLE--------HHDAHSY--HGLVCLMQISTREKDWIVDTLLPWREELQILNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   +     P  SLK  
Sbjct: 298 ADPRILKVLHGSSMDVIWLQRDLGLYL--VGLFDTYHASVALNYPKKSLKFL 347


>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
 gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 231

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    PL         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDPLRG---DRLVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVH 57

Query: 39  DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
               +        + +  + L+++       V HN+ F+       LG      IP  R 
Sbjct: 58  GLSAEFLSTKPLFAEVVDEFLEFIA--EAPLVIHNASFDIGFINAELGKIARPPIPRDRL 115

Query: 94  ICTSVLARTNGLPSS--LKNACLALNFS 119
           + T +LAR      S  L + C      
Sbjct: 116 VDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
 gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
          Length = 381

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 27/188 (14%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET     L    ++ Y E   + L  ++   + + +     +   P  L    +   +  
Sbjct: 27  ETAIAVDLEADSMFHYQE--KVCLLQFSTPSKNILVDPLAVKDLSP--LAPIFKSFGICK 82

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE 127
           + H + ++     +   I++       T + AR  GL    L +               +
Sbjct: 83  IFHGADYDIRSLYRDFKIEVN--ALFDTQIAARFLGLTDIGLASL-------------LQ 127

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           GK  I    K            A          +Y   D      L + L         L
Sbjct: 128 GKLNITLKKKYQKKDWSQRPLPA-------PMLQYAVHDTCHLIPLAQNLREELVKTGRL 180

Query: 188 WLLDQTIN 195
             +++   
Sbjct: 181 PFVEEECQ 188


>gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6]
 gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6]
          Length = 388

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    +E   L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAFAGDGEEDAVLVDPLAEGLAL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    R+E V+ V H +  +  +F   +   +  K    T V A   G          
Sbjct: 67  DPLYDLFRNEAVVKVFHAARQDLEIF--WVDAGVFPKPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K       K S  +       +           Y   DV   R ++
Sbjct: 117 ----EQVGYETLVRKIAKQSLDKSSRFTDWSRRPLSGAQ------KTYALADVTHLRRIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EFLAKELEKSGRSHWV 182


>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
          Length = 831

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 29/162 (17%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
            ++ +D+E     T         G+        + L   +  D+   +            
Sbjct: 243 KEIAVDLEHHDFRTY-------TGL--------VCLMQVSTRDQDWIVDTLQPWRHKLEV 287

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN-ACL 114
           L     + +++ V H +  + +  ++ LG+ +       T         P  SL      
Sbjct: 288 LNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNG--LFDTYFACDLLNYPGKSLAFLLSK 345

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + F            L     +   +   Y      H   +
Sbjct: 346 FVGFDADKQ-----YQLADWRIRPIPEEMLYYARSDTHYLLY 382


>gi|119195137|ref|XP_001248172.1| hypothetical protein CIMG_01943 [Coccidioides immitis RS]
          Length = 766

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y    ++ L   +  ++   +            L +  
Sbjct: 248 KEIAVDLE--------HHDAHSY--HGLVCLMQISTREKDWIVDTLLPWREELQILNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112
            D  ++ V H S  + I  ++ LG+ +       T   +     P  SLK  
Sbjct: 298 ADPRILKVLHGSSMDVIWLQRDLGLYL--VGLFDTYHASVALNYPKKSLKFL 347


>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTSKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
 gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 240

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET               E   + L                       A A  
Sbjct: 4   MRQIVLDTETTGLN---AATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIDEGAIAVH 60

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDI---PSK 91
              V+   D+ + + + +++  +++D     + HN+ F+        + LG+        
Sbjct: 61  GITVEFLADKPKFAEVVNEVRDFVQDAE--LIIHNAQFDLGFLDMEFRLLGLPPFREHVG 118

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             I T + AR    G  +SL   C  L  S
Sbjct: 119 SVIDTLLEARQMFPGKRNSLDALCDRLGVS 148


>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
 gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
          Length = 399

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 48/189 (25%), Gaps = 35/189 (18%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L ID E     T                 A + L     DDE + +            L 
Sbjct: 40  LAIDTEFLREKTYY---------------ARLCLLQMQTDDETIIVDPFAVSD--LGVLA 82

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNAC 113
              +  ++M + H+   +  +  + +G  +  +    T V A   G        SL    
Sbjct: 83  PLFQSSSIMKIVHSGRQDLEILNREVG--LLPQPLFDTQVAAALLGHTQQIGYGSL--VS 138

Query: 114 LALNF---SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEA 169
                             + L A     + D   Y     + +    +  G     D + 
Sbjct: 139 AVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGRIHWLDPDF 198

Query: 170 TRELFKRLI 178
              +   L 
Sbjct: 199 AALIDPALY 207


>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
 gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 50/185 (27%), Gaps = 41/185 (22%)

Query: 2   SKLFIDIE---TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            ++ +D+E   TRS   L             ++L   +  ++   +            L 
Sbjct: 243 KEIAVDLEHHDTRSYVGL-------------VSLMQISTREKDWIVDTLKPWRQQLQVLN 289

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +   D  ++ V H +  + +  ++ LG+ +       T               AC  L  
Sbjct: 290 EVFADPCIIKVFHGAYMDIVWLQRDLGLYV--VGLFDT-------------HYACRRLGL 334

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKR 176
                    G +L     K            A+       +    Y + D      +F  
Sbjct: 335 --------AGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDN 386

Query: 177 LIPLS 181
           L    
Sbjct: 387 LRNEL 391


>gi|224009215|ref|XP_002293566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970966|gb|EED89302.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 291

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 28/173 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQY 60
           K+  D E      L ++G         I    ++     V L D  ++    +   + + 
Sbjct: 52  KIAFDCE---GVNLSRLG------SVEIVSICFS--SSEVYLIDFGKEKCPKIVEAVKEL 100

Query: 61  LRDETVMCVAHN--SLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSSLKNAC 113
               T+  + H+    F+ +         I       T   +  +         +L +  
Sbjct: 101 FECSTLTKIIHDCRMDFDAL----YHNHGIKLVNVHDT---SAFHDFIGYEKGKNLNDTL 153

Query: 114 LALNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                  +  + +   K+    +    +     D   ++  + +QL  +   R
Sbjct: 154 SYYGIRVNTERDKSVYKSNPNFWAARPLTKKMIDWASSDVDKLFQLAEKQLGR 206


>gi|182417131|ref|ZP_02948504.1| exonuclease [Clostridium butyricum 5521]
 gi|237669064|ref|ZP_04529048.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378973|gb|EDT76479.1| exonuclease [Clostridium butyricum 5521]
 gi|237657412|gb|EEP54968.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 205

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 36/131 (27%), Gaps = 37/131 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA------------------------VITLCAYA 36
           M  LF D ET S +P     +      A                         I   +  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASTKPQVTTGKNFFFTVDEMDPSAQEIHGFSL- 59

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSK 91
                 KL++ +E          ++ D  E    + HN  F+    K    TLG     K
Sbjct: 60  -----EKLYELSEGQYFEDLAFDFINDFREADFIIGHNVNFDIRFLKHELFTLGELFEPK 114

Query: 92  RWICTSVLART 102
              CT   A  
Sbjct: 115 NIFCTM--AYY 123


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
          Length = 244

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP-----LPKVG-------------VWAYAE-----QAVITLCAYAW 37
           M ++  D ET    P     + ++G             +  Y              A A 
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPE----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GIDIPS 90
                +   D+   + +    L ++ D     +AHN+ F+   F   L       ++   
Sbjct: 57  HGLTTEFLADKPRFAEVAEQFLAFIADAE--LIAHNAAFDVKFFNAELQRIGRDPLNTHC 114

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
           +  + + + AR+       SL   C     S
Sbjct: 115 ENIVDSLLHARSLHPGKRNSLDALCDRYGIS 145


>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
          Length = 824

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D+E              Y    ++ L   +  ++   +            L +   
Sbjct: 264 EIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFA 313

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFSE 120
           D +++ V H S  + I  ++ LG+ +       T   A    LP  SLK      + F  
Sbjct: 314 DPSIIKVLHGSSMDVIWLQRDLGLYL--VGLFDTFHAASALQLPKKSLKFLLHEYVGFDA 371

Query: 121 HLT 123
              
Sbjct: 372 DKQ 374


>gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 230

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 44/158 (27%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGV-------------WAY--------AEQAVITLCA 34
           M +L +D ET      S   + ++G                Y        AE   +    
Sbjct: 1   MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQRAMPAEAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI----DI 88
              D+          +  + +D+ Q   D   T + V HN+ F+       L       +
Sbjct: 61  ---DE-------FLARQPVFADIAQAFVDFVGTDLLVIHNASFDMKFLNAELDWLGRAKL 110

Query: 89  PSKRWICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
           P ++ + T  +AR    G P+SL   C     +    +
Sbjct: 111 PMEQSLDTLAIARKKFPGSPASLDALCRRFGVNNDARE 148


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 55  SDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR----TNGL 105
            +    + D  +  + +AHN+ F+  +  K     G+ +P  +++CT   +R      G 
Sbjct: 176 KEYWPSIEDLFKKYVIIAHNANFDLSVLSKTLLHYGLKVPPIKYVCTYNESRNKFPQLG- 234

Query: 106 PSSLKNACLALNFS 119
             SLK+     +  
Sbjct: 235 KYSLKSMAEYFDIP 248


>gi|225388910|ref|ZP_03758634.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
 gi|225045019|gb|EEG55265.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            F+ P+D+V+  QR   K +   + Y               L + +          FE +
Sbjct: 1   MFHIPLDQVTPLQRRNAKAVNFGIVYG-----ISAFGLSEDLSISRKEAVEYINKYFETY 55

Query: 476 EQAESHHL 483
              ++   
Sbjct: 56  PGVKTFLD 63


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 41/149 (27%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------AYAWDDEPVKL 44
           M ++  D ET               E   I +                      DE + +
Sbjct: 1   MREIIFDTETTGLN----KESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAI 56

Query: 45  W--------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----KR 92
                    D      +   LL ++ + T+  VAHN+ F+       LG           
Sbjct: 57  HGLTNEHLKDEKNFEDIVDALLDFIDNATI--VAHNANFDIGFLNAELGRVNKPLVSSDN 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            I T  +AR      P+SL   C      
Sbjct: 115 VIDTLSIARRRFPMGPNSLDVLCKRFGID 143


>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
 gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
          Length = 380

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 91/310 (29%), Gaps = 32/310 (10%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLL 58
           M   + +D E        +V  +       + L    +DDE V L D        P   +
Sbjct: 29  MKSAVALDTE------FMRVSTYF----PKLGLIQL-YDDERVSLIDPLAITDFSP--FV 75

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115
             L +  V+ + H+   + ++F +    D   +  I T ++AR  GL   + L       
Sbjct: 76  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 133

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN          G        +   D              W L   Y   + E  +  ++
Sbjct: 134 LNIEIDK-----GATRTNWIKRPLSDIQLQ----YAAGDVWYLLPLYHILEKELAKTPWE 184

Query: 176 R-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           + +    +         Q  +     +D+    KL        + L +    +      +
Sbjct: 185 QAVRDDCELALAKTHKLQERDSEKAYLDIPNAWKLNPFELSRLRILAQWRQNVAIERDLA 244

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
                     L+     +    +   L+  L+ + +    K ++     +   +      
Sbjct: 245 L-SYIVKSDNLW-KVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLAQARRVSPNDYPK 302

Query: 295 LSEAVSSDGR 304
             E +S D R
Sbjct: 303 PIERISEDPR 312


>gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
 gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
          Length = 205

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 50/201 (24%), Gaps = 36/201 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET        +G+    +   + L   +       L      S   + +L   L 
Sbjct: 20  VAVDTET--------MGLITPRD--RLCLVQISDGRGDEHLVRFAPGSDYAAPNLRAVLA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
           D   + + H + F+    +    I + +    CT   +R          LK     L   
Sbjct: 70  DPARLKLYHFARFDLAAIRHY--IGVMAAPVYCTKTASRLIRTYTDRHGLKELVREL--- 124

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                      L     K    S              +   +Y   DV     +   L  
Sbjct: 125 -----------LGQEVSKQQQSSDWG------APDLSEAQKDYAASDVRYLHAMRTILDE 167

Query: 180 LSDGERDLWLLDQTINDRGYR 200
               E    L     +    R
Sbjct: 168 RLAREGRTALAQACFDFLPAR 188


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------- 48
           M ++  D ET          +   G+    +           +    K+           
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60

Query: 49  --------EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK---RWICT 96
                     + +  +++ +  D     VAHN+ F+      +   + +P     R I T
Sbjct: 61  DDFLKDKPSFAEIAQEIVDFFGDAR--WVAHNATFDMGFINAEFERLGLPPVGSDRVIDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             LAR      P+SL   C      
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGID 143


>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
 gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella sp. BO1]
 gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella sp. BO1]
 gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEKIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|254718869|ref|ZP_05180680.1| Rnd, ribonuclease D [Brucella sp. 83/13]
 gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
 gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
 gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
 gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEKIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQAVI-TLCAYAWDDE--------------PV 42
           M    +D ET    S   + +VG+    E   I  +     +                  
Sbjct: 14  MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 73

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS-- 97
            + D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T   
Sbjct: 74  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 131

Query: 98  -------VLARTNGLPSSLKNACLALNFSEH 121
                  + +   G+                
Sbjct: 132 LKICFPSLPSYQLGM------VSSHFGLEHD 156


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGKIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   K   I +PS  +I
Sbjct: 53  IHGIRPHMVKDELEFDKIWEKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFSEHL 122
           CT  L+    ++   + L      L +    
Sbjct: 113 CTMKLSKNFYSSIDNARLNTVNNFLGYKFQH 143


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 28/147 (19%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQ---AVITLC---------AYAWD-DEPVKL 44
           S +  DIET    P    + + G     +      +T           A+  +     + 
Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQ 483

Query: 45  WDRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
              +E  ++   L +     D  V  +AHN+ F+    K   +   +  P+   I T + 
Sbjct: 484 MLDSEGLSIKDGLQRIYDCLDGKVA-IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIA 542

Query: 100 ARTNGLP----SSLKNACLALNFSEHL 122
           +R  G P      L++    L      
Sbjct: 543 SR-IGFPNYKRHKLEDVTSRLGVVYDP 568


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC---AYAWDDEPVKLW-----D 46
           M  + ID ET + +      V  A+ E   +      L       +    +++      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
             +    P  + ++L D    + +AHN+ F+  +        G  +P     CT  +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSSLKNACLALNFS 119
                    L      L   
Sbjct: 121 VFPDPAGHGLAKVAGRLGIR 140


>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
 gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
          Length = 219

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 32/148 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDL- 57
           M ++F+D ET    P          E A + +       +   V +    E      ++ 
Sbjct: 1   MRQIFLDTETTGLDPAQG---HRIIEIAAVEMINRQVTNNQFHVYINPEREIDEAAQEVH 57

Query: 58  ---LQYLRDE---------------TVMCVAHNSLFERILFKKTLGIDIPS------KRW 93
              L++L D+                   + HN+ F+       LG           +  
Sbjct: 58  GLTLEFLSDKPGFESISEKFISFIADSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVI 117

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
             + V+AR    G  ++L   C      
Sbjct: 118 TDSLVMARELRPGQRNNLDALCRHYGVD 145


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC---AYAWDDEPVKLW-----D 46
           M  + ID ET + +      V  A+ E   +      L       +    +++      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
             +    P  + ++L D    + +AHN+ F+  +        G  +P     CT  +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSSLKNACLALNFS 119
                    L      L   
Sbjct: 121 VFPDPAGHGLAKVAGRLGIR 140


>gi|302789405|ref|XP_002976471.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
 gi|300156101|gb|EFJ22731.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
          Length = 328

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 44/189 (23%), Gaps = 32/189 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           + +D E      L        A    + +   A+ D  + L D  +            L 
Sbjct: 43  IGLDCE---GVDL--------ARHGRLCIMQLAFQD-AIYLVDAVQGGDALMQACKPALE 90

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNF 118
              V  V H+   +        GI +       T +      L         +       
Sbjct: 91  SPHVTKVVHDCKRDSEALYFQHGIKLN--NVFDTQIAHSLIELQQGRQWIPDDC------ 142

Query: 119 SEHLTKMEEGKAL----IARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATREL 173
                      A     +A   K  + S    D     H     +       DV     +
Sbjct: 143 --ISFVDLLADAKYCVGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRI 200

Query: 174 FKRLIPLSD 182
            + ++   D
Sbjct: 201 HRNMVQRLD 209


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 43/137 (31%), Gaps = 25/137 (18%)

Query: 6   IDIETRSPQP----------LPKVGVWAYAEQAVITLCAYAWDDEP--------VKLWDR 47
           +D ET    P          L  V      E    TL     D           V+L   
Sbjct: 9   VDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDIGAQWIHHISAVELIHA 68

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKR--WICTSVLART 102
            E   +  +L   L     + VAHN  F+        + LG DIP      +CT  L+R+
Sbjct: 69  PEFEGIARELRDLLA--GRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMKLSRS 126

Query: 103 NGLPSSLKNACLALNFS 119
                SL + C      
Sbjct: 127 LIGVGSLADCCREFGID 143


>gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 214

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 30/193 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + +D E      + +   +       + L   A  D    L D   +       L  +
Sbjct: 21  SFVTVDTE-----FMRETTYY-----PKLCLIQMAGPDGFACLVDPLAKGLDLKPFLDLM 70

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE+ + V H++  +  +    L   +    +  T V A   G   S             
Sbjct: 71  ADESTVKVFHSARQDLEII--WLLGGLLPHPFFDTQVAAMVCGYGDS------------V 116

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +        AR  K S  +       ++   A      Y   DV     +++ L    
Sbjct: 117 SYEQLVNDVAKARIDKSSRFTDWSRRPLSDAQLA------YALSDVTHLVTIYQVLAAEL 170

Query: 182 DGERDLWLLDQTI 194
                   LD+ +
Sbjct: 171 VRTDRGLWLDEEM 183


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 1   MSKLF--IDIETRSPQPLPKVGVWAYAEQAVITL------CAYAWDDEP---VKLWDRTE 49
           M +++   D+ET    P         A +  +             +       ++ + T 
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60

Query: 50  QSA------MPSDL-LQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
            +       +P +L +  L       + VAH++ F+     + L   +    ++CT VL+
Sbjct: 61  INESMMRGGIPEELAIPLLACFMSGSIVVAHHAPFDLSFLARYL---VEPSSFVCTRVLS 117

Query: 101 RTN--GLPSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +    G  +SL                     E    I +  K   D+     
Sbjct: 118 KLVEPGESASLAAVAERRGIELTGHHRAMADVEATVKIFQQLKAEADALGIRY 170


>gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
 gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
          Length = 389

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E  S           +A +A +     A DD+ V L D  +   +P  L   +
Sbjct: 28  REIAVDLEADS----------MHAFRARLCFLQLATDDQ-VFLLDTLQPGVVPGMLAPLM 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LALNFS 119
            D       H +  +     +   + +  +    T   A   G P   L +     L   
Sbjct: 77  ADPARTKFFHAAQGDLQFLAE---VGVRVQGLFDTHRAATLLGWPKVGLADLARERLGVE 133


>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
          Length = 388

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 54/215 (25%), Gaps = 27/215 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A     V +    +   +     + + +  V+ V H +  +  +    LG  
Sbjct: 35  PELCLVQMASPTLEVLVDPLAKGIDLTPMF-ELMANPNVVKVFHAARQDIEII-YHLG-G 91

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G   S                    K    +  K S  +     
Sbjct: 92  LIPHPIFDTQVAAMVCGFGDS------------ISYDQLVQKIKNVQIDKSSRFTDWSRR 139

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI------ 201
                         Y   DV   R+++  L    + E     L + +N    R       
Sbjct: 140 PLTEKQLD------YALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILESRDTYDMHP 193

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           D   +     L       + + +    +   RS  
Sbjct: 194 DDAWLRLKSRLRKPTELAILKFVAAWREREARSRN 228


>gi|254689015|ref|ZP_05152269.1| Rnd, ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
          Length = 384

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I]
 gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I]
          Length = 385

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    ++   L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAFSGNGEDDAVLVDPLADGISL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RDE V+ V H +  +  +F   +   +  K    T V A   G          
Sbjct: 67  EPLYALFRDENVVKVFHAARQDLEIF--WVDAGVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              +   + K+           K S  +       +           Y   DV   R+++
Sbjct: 118 QAGYETLVRKIV-----KQGLDKTSRFTDWSRRPLSEAQ------KTYALADVTHLRKIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EFLAAELEKSGRSHWV 182


>gi|439149|gb|AAA64535.1| DNA polymerase [Bacillus phage SPO1]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 17/108 (15%)

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               ++      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  +
Sbjct: 1   EFRKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTL 59

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387
                +      +                   +G  +V  D + +E R
Sbjct: 60  FQYNFEIKKMFNSRFG----------------DGGVIVQFDYSQLELR 91


>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
           intestinalis]
          Length = 647

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S++ +D+E  S           Y     IT     +   +   + D     A  + L Q 
Sbjct: 84  SEIAVDLEAHS-----------YRSYQGITCLMQLSTRTKD-YIVDTIALRAELNILNQV 131

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL 116
             +  ++ V H +  + I  ++  GI +       T   AR  GL   SL       
Sbjct: 132 FANPNIIKVFHGADSDIIWLQRDFGIYV--VNLFDTGQAARALGLQRHSLDYLLTHY 186


>gi|148807520|gb|ABR13563.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 34/173 (19%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288
            +      +   L    G+     +E       + +L   +I +    LI   L     A
Sbjct: 47  FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA 103

Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348
             ++++       DGR+ G +   GA  TGR +        +P                 
Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADL-AGIEARVLAWIAGEDWKIK 400
                           RS      G KL+            LA    ++    
Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCGCPVAXNYACLAHYMRDESIHH 190


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 23/143 (16%)

Query: 2   SKLFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------RT 48
             +  D+ET                E   I    Y   +   +                 
Sbjct: 4   RYIAFDVETPNYANDRMSAIGITVVEAGEIAGEYYTLVNPEQRFDRFNIALTGITPEMVA 63

Query: 49  EQSAMPSDLLQY--LRDETVMCVAHNSLFERILFKKT---LGI-DIPSKRWICTSVLART 102
           ++   P    +   L D   + +AHN+ F+  +  K     GI   P+ R+ CT  ++R 
Sbjct: 64  DKPTFPELWREIGPLMDSG-LLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTCQMSRR 122

Query: 103 N---GLPSSLKNACLALNFSEHL 122
                    L      L      
Sbjct: 123 LLPQLPNHKLNTLSDYLGLELDH 145


>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 65/245 (26%), Gaps = 48/245 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY---L 61
            ID E  S        +  Y E   + L  ++   E V +        +  DL      L
Sbjct: 25  AIDTEADS--------LHRYRES--LCLIQFSAKGESVLIDPL-----VIEDLSPLGSYL 69

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
                    H + ++  +FK+  G D+  K    T + AR  G                 
Sbjct: 70  --SEATVWMHGADYDMTMFKRQFG-DL-PKVVYDTQIGARLLG--------ARRFGLG-D 116

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE----LFKRL 177
           L  +  G  L     K      P                EY   DV    E    +  +L
Sbjct: 117 LVSLYFGVELSKSSQKADWGKRPLSPK----------MIEYALNDVHYLLEMGDLIVTKL 166

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD---LVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
             L   E  L            R D       ++    + +      +++    D   RS
Sbjct: 167 KDLGRYEWFLESCTAARRRVLDRDDSKEETWRIQGSGKLDRRGLAFLKELWTWRDSEARS 226

Query: 235 SRQTY 239
             +  
Sbjct: 227 WDRPS 231


>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 382

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254693498|ref|ZP_05155326.1| Rnd, ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|254697150|ref|ZP_05158978.1| Rnd, ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701527|ref|ZP_05163355.1| Rnd, ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|254707023|ref|ZP_05168851.1| Rnd, ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|254709868|ref|ZP_05171679.1| Rnd, ribonuclease D [Brucella pinnipedialis B2/94]
 gi|254713869|ref|ZP_05175680.1| Rnd, ribonuclease D [Brucella ceti M644/93/1]
 gi|254717074|ref|ZP_05178885.1| Rnd, ribonuclease D [Brucella ceti M13/05/1]
 gi|254730046|ref|ZP_05188624.1| Rnd, ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|256031360|ref|ZP_05444974.1| Rnd, ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|256060870|ref|ZP_05451030.1| Rnd, ribonuclease D [Brucella neotomae 5K33]
 gi|256257265|ref|ZP_05462801.1| Rnd, ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260168494|ref|ZP_05755305.1| ribonuclease D [Brucella sp. F5/99]
 gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
 gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
 gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
 gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
          Length = 385

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFGEVVEEFLAYIDGAELIIHNAAFDLGFLDNELALLGDHYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|239908264|ref|YP_002955005.1| hypothetical protein DMR_36280 [Desulfovibrio magneticus RS-1]
 gi|239798130|dbj|BAH77119.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1507

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 44/155 (28%), Gaps = 1/155 (0%)

Query: 350  GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409
            G +    L   +   R   + S G  ++  D+   E  +++ ++ + + +    +G+DIY
Sbjct: 1253 GRSGYRILSTLNKKFRLLFLPSEGHVILAFDMKHFEPTIISSLSNDTYALGLINSGKDIY 1312

Query: 410  VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                        ++   ++     +  +A+   G      +      + + +        
Sbjct: 1313 TEVAMSISGALNEERFNDRSFGKVLFNIAIN-GGNEHALVSRCYETNVIITRSCSAEIFN 1371

Query: 470  STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
            +    +         +      +            
Sbjct: 1372 NFRNMFPVIFQFQNRILHMARTYGKMYTKFSRVLY 1406


>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 244

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYIDGAELIIHNAAFDLGFLDNELALLGDHYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
 gi|254704076|ref|ZP_05165904.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
 gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
          Length = 385

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|254259166|ref|ZP_04950220.1| 34L [Burkholderia pseudomallei 1710a]
 gi|254217855|gb|EET07239.1| 34L [Burkholderia pseudomallei 1710a]
          Length = 223

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 27/159 (16%)

Query: 38  DDEPVKLWDR------TEQSAMPSDLLQYLRDETVMCVAHN-SLFERI-LFKKTLGIDIP 89
           DD  V   D        +   +   L + L    +  VA N   F+   +  + L + +P
Sbjct: 9   DDPRVIYHDTSRQRNKEDDRRIVRKLWRLLDQADI-VVAQNGIKFDAKKIQARFLLLGMP 67

Query: 90  S---KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                + + T V AR                F+ +  +    K       K     P ++
Sbjct: 68  PPSPFKVVDTLVEAR------------KHFGFTSNKLEWLTEKLCKKHKKKKHAKFPGFE 115

Query: 147 CTRAN---HVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
             R     +++AW    EY   DV +  EL+  L P   
Sbjct: 116 LWRECLKGNLEAWAEMKEYNVEDVLSLEELYLVLRPWMQ 154


>gi|168010031|ref|XP_001757708.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690984|gb|EDQ77348.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 294

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 17/180 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LR 62
           +  D E      L + G         + +   A+DD  V L D            +  L 
Sbjct: 14  IGFDCE---GVDLARYG--------RLCIMQLAFDD-AVYLVDAVMGGNSLMQACKLGLE 61

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              V+ V H+   +        GI +       T +           K           L
Sbjct: 62  SPYVIKVCHDCKRDSEALYFQYGIKLN--NVFDTQIAYTLLKEQHGKKWVPDDYISFVDL 119

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ-LFGEYCKRDVEATRELFKRLIPLS 181
              E    +I    K  +        +    + W  +       DV     +++R++   
Sbjct: 120 LADERYCGMI-YDEKEEVRVLLRKDPQFWAHRPWTVMMKRVAADDVRFLLRIYERMVKSL 178


>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
 gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
          Length = 374

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 32/195 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E           V      A + L    +D E + L D  E   +   L Q + D
Sbjct: 29  VALDTE----------FVRTRTLHAQLGLIQL-YDGETLALIDPLEIQDL-GPLWQLIAD 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + V+ V H++  +  +F    G  +  +    T V      L  ++              
Sbjct: 77  KNVVKVLHSASEDLEIFAYRGG--VIPQPLFDTQVAGVLLNLGGAM-------------- 120

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   +     G         T        +    Y   DV    ++++ + P  + 
Sbjct: 121 ----GYGKLIHHYLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEE 176

Query: 184 ERDLWLLDQTINDRG 198
              L  L Q      
Sbjct: 177 MGRLDWLWQEGERAC 191


>gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 306

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 31/129 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWDRTEQSAMPSD 56
             L+ID E               +    ++L     D      + V L D   Q  +  +
Sbjct: 21  KTLWIDTE----------VADYKSRNPRLSLIQVLDDPTDMSGDRVNLLDVLNQPDVVGE 70

Query: 57  LLQ-YLRDETVMCVAHNSLFERILF--KKTLGIDIPSKRWICTSVLA-----RTNGLP-S 107
            ++  + +  +  V HN+ ++      K+   I        CT  +A         LP  
Sbjct: 71  FIEQIMINPEIEKVFHNANYDLKFLGKKRAKNIT-------CTLEIAQKIPYYILPLPNY 123

Query: 108 SLKNACLAL 116
            LK    AL
Sbjct: 124 QLKTLATAL 132


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPVKLWDRTEQSAMPSDL-- 57
           M ++  D ET       +  +    E   I L   +          +  +++  P  L  
Sbjct: 1   MREIVFDTETTGL----ESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAV 56

Query: 58  ----------LQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                          D         +    VAHN+ F+       F++     +  +  I
Sbjct: 57  HGITPEFLKDKPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEFERLGRPLVGPEHVI 116

Query: 95  CTSVLARTNGL--PSSLKNACLALNFS 119
            T  LAR      P+SL   C      
Sbjct: 117 DTLSLARRKHPMGPNSLDALCRRYGID 143


>gi|242009894|ref|XP_002425717.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
 gi|212509618|gb|EEB12979.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
          Length = 1124

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 77/266 (28%), Gaps = 43/266 (16%)

Query: 33  CAYAWDDEPVKLW---DRTEQ-SAMPSDLLQY-----LRDETV----MCVAHNSLFERIL 79
            A A  +     W   D  E   ++P+          L D+      + V HN  ++R  
Sbjct: 226 LATAVSENAWYGWVNSDLAEGIDSLPTQFYTAEKLIPLGDKNKTNPAIVVGHNVSYDRSK 285

Query: 80  FKKTLGIDIPSKRWICTSVLART-----------NGLPSSLKNACLALNFS--EHLTKME 126
            K+    +  + R++ T  +                  S   ++           + K+ 
Sbjct: 286 IKEQYSFESNAVRFLDTMAIHTCIGGINKNQTKDLNETSIFNDSSEVFCLISLRDMYKLY 345

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
            G+ +        +     D         ++    YC +D  AT E+ +++ P+      
Sbjct: 346 CGREISKTERDVFVKGSILDIK-----NDFENLMSYCSKDTIATFEILQKIFPIFLNRFP 400

Query: 187 LWLLDQTI-NDRGYRIDLD--------LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             +    +       + +            +  E +  E   +      L   +  +   
Sbjct: 401 HPVTLAGMLEMSVAFLPVTSNWKKFILEADQTYEDLKNEMSLILSRKSDLACRLFHNDEF 460

Query: 238 TYALRMYLFLITG-IDLVDMSEGTLK 262
              L  +L+     I  + +++  + 
Sbjct: 461 KKDL--WLWDENWSIQNLKLTKKKVP 484


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------- 48
           M ++  D ET          +   GV    +           +    K+           
Sbjct: 1   MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60

Query: 49  --------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWI---CT 96
                     + +  +++ +  D     VAHN+ F+          + +P         T
Sbjct: 61  DDFLKDKPSFADVVEEIVDFFGDAR--WVAHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             LAR      P+SL   C      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGID 143


>gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 308

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 68/251 (27%), Gaps = 53/251 (21%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             L++D E+         L  + V AY E           +     ++D  +   +    
Sbjct: 21  KILWLDTESTDLNSKKSRLSLIQVLAYPED---------TNGSRTYIFDVLDNPDIVDYF 71

Query: 58  LQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR---TNGLP---SSLK 110
           ++  + ++ +  + HN+  +             +K   CT  L++    + LP    +LK
Sbjct: 72  IEKIMVNDQINKIFHNAQHDLQFL-----GGKKAKNVTCTLKLSKTIPYHILPVPNHTLK 126

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRDVEA 169
                L                        +    + T     +        Y K D   
Sbjct: 127 TLTEYL--------------------TDFKNVSKEEQTSDWSQRPLSQKQLDYAKMDPVY 166

Query: 170 TRELFKRLIPLSDGERDLWLL--DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
              +  RL+ L+              I  R   I  +      +L+  E   L+      
Sbjct: 167 LAHIHGRLLELNQQSNPDPNQDNLTEIGKRYQEIKPEW-----QLLKSEIDNLETRAKNA 221

Query: 228 TDGIIRSSRQT 238
                ++    
Sbjct: 222 MKAQNQTENFA 232


>gi|262212351|gb|ACY35792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLGDHYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
 gi|150856187|gb|EDN31379.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
          Length = 823

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 41/184 (22%)

Query: 3   KLFIDIE---TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           ++ +D+E   TRS   L             ++L   +  ++   +            L +
Sbjct: 244 EIAVDLEHHDTRSYVGL-------------VSLMQVSTREKDWIVDTLKPWRQQLQVLNE 290

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
              D  ++ V H +  + +  ++ LG+ +       T               AC  L F 
Sbjct: 291 VFADPNIIKVFHGAYMDIVWLQRDLGLYV--VGLFDT-------------HYACRRLGF- 334

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRL 177
                   G +L     K            A+       +    Y + D      +F  L
Sbjct: 335 -------AGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNL 387

Query: 178 IPLS 181
               
Sbjct: 388 RNEL 391


>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
 gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 70/277 (25%), Gaps = 44/277 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D  T  +  P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQRAYLIDPLTIDNWQP--LAALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNF 118
            +  V+ V H    +  +  +  G          T + A    L  S+         L  
Sbjct: 73  ENPAVVKVVHACSEDLEVLLRLTGS--LPAPLFDTQLAAAYLNLGFSMGYSRLVQEVLGI 130

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G+       +                   +    Y   D     ++F  L 
Sbjct: 131 DLPK-----GETRSDWLQRPLS----------------ETQVSYAAEDAVHLAQVFTELR 169

Query: 179 PLSDGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
           P    ++  W+L+       +    +D  ++  + +      R +L             +
Sbjct: 170 PRLSEDKYRWVLEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREA 229

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
             +       +       L       L ++    ++ 
Sbjct: 230 RARNLPRNRIVREHALWPLAKTQPDNLSALAKIEDMH 266


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQPL------------------------PKVGVWAYAEQAVITLCAYA 36
           M  +F+D ET    P                           +     +++  + +   +
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLS 60

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPS----- 90
            +     L D+     + S+ L+++ D  ++   HN+ F+     + LG I +       
Sbjct: 61  RE----FLQDKPAFQEICSEFLEFIEDAEILI--HNAPFDVGFINRELGLIRLEPMHNYC 114

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
            + + T +LA+        +L   C      
Sbjct: 115 LQIVDTLMLAKELHPGKRNNLDALCERYQID 145


>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 243

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 43/166 (25%), Gaps = 57/166 (34%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------DEPVKLWDRTEQSAMP 54
           M ++ +D ET         G   ++    I     A +                 Q +MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPQRSMP 50

Query: 55  SDLL-------QYLRDET-------VMC---------------------VAHNSLFERIL 79
            +           L           ++                      V HN+ F+   
Sbjct: 51  HEAFGVHGIGPDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKF 110

Query: 80  FKKTLGI----DIPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
               LG      +P  + I T  +A  R  G P++L   C      
Sbjct: 111 LNAELGWMNLPQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGID 156


>gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 377

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 75/273 (27%), Gaps = 36/273 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWAP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPAVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHV-QAWQLFGEYCKRDVEA-TRELFKRLI 178
              + +G+       +   D+   Y    A H+ + + +       D  A   +    L+
Sbjct: 129 NIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRLSDDKYAWLLDDGAELV 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E D + + +         D  L  KL        ++L           +++  + 
Sbjct: 189 ANLRREVDPYEVYR---------DAKLAWKLSRAQLAVLREL------CAWREVQARARN 233

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
                 +   +   L       L ++    ++ 
Sbjct: 234 LPRNRIIREHSLWPLAKTQPDNLGALARIEDMH 266


>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLGDHYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 14/97 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID E              Y     + L      +    L D  + + + + L    
Sbjct: 27  KIMSIDTE----------SSGYYTYYPKVCLIQIN-SNGKNYLIDPLKITNLSA-LGPLF 74

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
            D  ++ + H++  +    K+  G          T +
Sbjct: 75  EDPNILKIFHSAQDDIKALKRDFGFKF--VNTADTMI 109


>gi|195026828|ref|XP_001986344.1| GH20576 [Drosophila grimshawi]
 gi|193902344|gb|EDW01211.1| GH20576 [Drosophila grimshawi]
          Length = 995

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 76/266 (28%), Gaps = 31/266 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM SD  L   L  + V+ V H+   + +   +  G
Sbjct: 559 GEITLIEIGTARGEAFLFDVQTCPAMVSDGGLKTLLEHDQVIKVIHDCRNDAVNLYQQFG 618

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +     I R
Sbjct: 619 ILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCNPIKDQL--KQIYR 674

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT--RELFKRLIPLSDGERDLWLLDQ 192
             +      P                 Y   DV      +LF  L      E  +   + 
Sbjct: 675 RDQKFWAKRPLTRE----------MMLYAAGDVLVLIHDQLFGNLAQQIKPENRVLFSEL 724

Query: 193 TINDRGYRIDLDLVL--KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
                  +I  + V   K Q  ++ E   L + + + +  I+ S+R+   LR        
Sbjct: 725 CTEQILMQIKPNEVKIRKKQRKVSTEVSDLKQKLAQTSKSIVLSNREIRLLRYMDLTEDE 784

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKD 276
            + +       K +    +     KD
Sbjct: 785 KERLKGYYKVAKKLEKMESAGNPNKD 810


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   K   I +PS  +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFS 119
           CT  L+    +N   + L      L + 
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGYK 140


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   K   I +PS  +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFS 119
           CT  L+    +N   + L      L + 
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGYK 140


>gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Pelagibaca bermudensis HTCC2601]
 gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Roseovarius sp. HTCC2601]
          Length = 229

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 40/154 (25%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGV-------------WAYA--------EQAVITLCA 34
           M ++ +D ET   +P     + ++G                Y         E   +    
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPERSMPQEAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID----IPS 90
              DD    L D+   + +  + L+++ D     V HN+ F+       LG      +P 
Sbjct: 61  ---DD---FLRDKPLFAQIVDEFLEFIGDS--KLVIHNATFDVKFLNAELGWSKRPLLPK 112

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
              + T  +AR    G P+SL   C         
Sbjct: 113 DCAVDTLAIARRKFPGSPASLDALCRRFGIDNSS 146


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   K   I +PS  +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFS 119
           CT  L+    +N   + L      L + 
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGYK 140


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   K   I +PS  +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFS 119
           CT  L+    +N   + L      L + 
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGYK 140


>gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19]
 gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19]
          Length = 417

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 32/198 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A +D    + D   +S      L  L 
Sbjct: 22  FITVDTE------FMRETTYW----PKLCLIQAASED-HAAIIDPLAKSLDLKPFLDILA 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE ++ V H    +  +F   + +         T V A   G                  
Sbjct: 71  DEKILKVFHACRQDMEIF---VNLGTMPMPIFDTQVAAMAAGYG---DQVAYD------- 117

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                  +L+ +  K  ID        +    + Q    Y   DV    +L+ +L     
Sbjct: 118 -------SLVRQKLKIDIDKGSRFTDWSRRPLSDQQLQ-YALGDVTHLAKLYPKLRDRLA 169

Query: 183 GERDLWLLDQTINDRGYR 200
            E  L  +   + D    
Sbjct: 170 REGRLEWVSAEMVDLCAP 187


>gi|229472291|gb|ACQ72660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRKLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYASILLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
           19424]
 gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 246

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 30/153 (19%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVHGIT 63

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPS-----KRWI 94
           V+   D+   + +  D+ ++++D     + HN+ F+          + +P         I
Sbjct: 64  VEFLADKPRFAEVVHDIREFVQDAE--LIIHNAQFDLGFLDMEFQLLGLPPFRQHVGNVI 121

Query: 95  CTSVLARTN--GLPSSLKNACLALNFSEHLTKM 125
            T   AR    G  +SL   C  L  S    K+
Sbjct: 122 DTLREARQMFPGKRNSLDALCERLGISNAHRKL 154


>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
 gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
          Length = 244

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLGDHYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 237

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 40/152 (26%)

Query: 1   MSKLFIDIETRSPQPLPK----------------VGVWAYA----------EQAVITLCA 34
           M ++ +D ET    P                    GV  +           E   +   +
Sbjct: 1   MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPERNVPMEAQNVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
             +               +  D L ++ D+  + V HN+ F+       LG+     +  
Sbjct: 61  TEFLIGK----PLFR--EVYRDFLAFIGDD--ILVIHNAQFDVNFLNHELGLVGEKPLSF 112

Query: 91  KRWICTSVLARTNGL--PSSLKNACLALNFSE 120
            R + T  LAR      P+SL   C       
Sbjct: 113 DRVVDTLALARRRHPAGPNSLDALCKRYGIDT 144


>gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
 gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13]
 gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40]
 gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
          Length = 377

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 75/273 (27%), Gaps = 36/273 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWAP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPAVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHV-QAWQLFGEYCKRDVEA-TRELFKRLI 178
              + +G+       +   D+   Y    A H+ + + +       D  A   +    L+
Sbjct: 129 NIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRLSDDKYAWLLDDGAELV 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E D + + +         D  L  KL        ++L           +++  + 
Sbjct: 189 ANLRREVDPYEVYR---------DAKLAWKLSRAQLAVLREL------CAWREVQARARN 233

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
                 +   +   L       L ++    ++ 
Sbjct: 234 LPRNRIIREHSLWPLAKTQPDNLGALARIEDMH 266


>gi|237716863|ref|ZP_04547344.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442846|gb|EEO48637.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 435

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 14/68 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57
             L +D ET   +P+           A +   +++  +                 +  + 
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  LQYLRDET 65
                +E 
Sbjct: 427 RPVFENEN 434


>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
          Length = 388

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 46/193 (23%), Gaps = 35/193 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E          G + Y     + L   +       + D  +   +   L     D
Sbjct: 29  ISVDTE--------SSGYYTYFS--KVCLIQIS-AKGKNYIIDPLKLQNL-ESLGNLFED 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
           + ++ + H+++ +    KK  G          T   +R       SL       +     
Sbjct: 77  KKILKIFHSAIDDIKALKKDFGFQFQ--NIADTGFSSRLLDHEQYSLTYLVDYYH----- 129

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                    I    K    +              +   +Y   D      +++++     
Sbjct: 130 --------KIKLSKKEQKSNWEKRP-------LEKSQLQYAALDTVYLETIWEKMKEELI 174

Query: 183 GERDLWLLDQTIN 195
                        
Sbjct: 175 KRNLYEEAISEFE 187


>gi|157129284|ref|XP_001655349.1| hypothetical protein AaeL_AAEL002475 [Aedes aegypti]
 gi|108882084|gb|EAT46309.1| conserved hypothetical protein [Aedes aegypti]
          Length = 939

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 49/203 (24%), Gaps = 34/203 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTE-QSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             IT+           ++D       +P   + + L  E V+ V H+   + +       
Sbjct: 494 GQITMIQLGTTRGEAFIFDVASCPDMVPHGGIKEVLESEKVIKVIHDCRNDSVNLFNQFQ 553

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL   C   N + +  K          
Sbjct: 554 ILLK--NVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEMYNATVNPMKD--------- 602

Query: 135 FCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ- 192
                + +      +    +        Y   DV         L   +  + +   L   
Sbjct: 603 ----QLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIKAEFRELLAE 658

Query: 193 ----TINDRGYRIDLDLVLKLQE 211
                I      +D+ +  K ++
Sbjct: 659 LCTEQILMLIRPVDVKMRKKQRK 681


>gi|17380447|sp|P54099|DPOG1_MOUSE RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|9082197|gb|AAF82772.1|AF268975_1 mitochondrial DNA polymerase gamma [Mus musculus]
          Length = 1239

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 92/344 (26%), Gaps = 43/344 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 820  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIA 878

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 879  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQ 938

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA--- 502
               + +       L +     K+   +   +    + L    ++    +   +  T    
Sbjct: 939  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGW 998

Query: 503  --CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               + ++   R   +     WK            G             +        +  
Sbjct: 999  VSLQDLRMIRREASR--KSRWKKWEVAAERAWTGGTESEMFNKLESIAMSDTPRTPVLGC 1056

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNA 617
             +   R L  S V+G+                        +VQ+ + D   ++   MK  
Sbjct: 1057 CIS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWL 1098

Query: 618  TKN---GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
             +         +++HDE+     +   +           L   M
Sbjct: 1099 FEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1142


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   K   I +PS  +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFS 119
           CT  L+    +N   + L      L + 
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGYK 140


>gi|307691811|ref|ZP_07634048.1| DNA polymerase III subunit epsilon [Ruminococcaceae bacterium D16]
          Length = 195

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 25/144 (17%)

Query: 2   SKLFIDIET-RSPQP-LPKVGV-----------WAYAEQAVITLCAYAW---DDEPVKLW 45
             +  D+ET  S    +  +GV             Y         ++        P  + 
Sbjct: 4   RYIAFDVETPNSANDRISAIGVTVVERGAVVEQHDYLVNPETRFASFNVALTGITPEMVA 63

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPS-KRWICTSVLAR 101
           D+     +  +L         + +AHN+ F+  +  K     GI       + CT  ++R
Sbjct: 64  DKPAFPQLWQELEPIFDSG--LLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTCQMSR 121

Query: 102 TN---GLPSSLKNACLALNFSEHL 122
                     L   C  L      
Sbjct: 122 RLLPQLPNHKLNTLCDFLGLELDH 145


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E A I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPRQG---HRIVEIAAIEMMNKVLTGRNFHFYINPERDIPFDAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          +  D L+++ D     V HN+ F+           K+     +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFIADS--KLVIHNAPFDIKFLNHELSLLKRAEIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 SNAIDTLVMARSMFPGSKYNLDALCKRFKVD 149


>gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ]
 gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ]
          Length = 375

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 11/179 (6%)

Query: 38  DDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D     L D        P  L   L D  V+ V H    +  +  +  G          T
Sbjct: 50  DGRSAYLIDPLDIGDWRP--LAALLEDPAVVKVLHACSEDLEVLLRLTGS--LPLPLFDT 105

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID-SPPYDCTRANHV-Q 154
            + A    L  S+      L  +    ++ +G+       +   +    Y    A H+ +
Sbjct: 106 QLAAAYLNLGFSMGY--SRLVQAVLGIELPKGETRSDWLQRPLSELQIRYAAEDAVHLAE 163

Query: 155 AWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
            +   G     D  A T E    L+     E  L           +++    +  L+EL
Sbjct: 164 LYVALGARLAEDKRAWTLEDGAELVANLRREV-LPEELYREGRLAWKLSRQQLAVLREL 221


>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 296

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 46/180 (25%), Gaps = 37/180 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E+ S           Y E   I L   +       + D       P  L + L D
Sbjct: 32  VALDTESNS--------FHVYRE--RICLLQVSTRAAD-YIVDPLAVDPSP--LGEVLCD 78

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHL 122
                V H + ++    ++  G  +P  R   T   AR  G     L     A       
Sbjct: 79  -GRETVLHGADYDVRCLRREYGWHLP--RLFDTMAAARRLGRQGLGLSALVEAH------ 129

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                G  L   F +      P    +            Y   D      L   L    D
Sbjct: 130 ----FGVRLSKTFQRSDWGQRPLTAAQ----------LAYAALDTHYLLALRDMLAGELD 175


>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
 gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 929

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 42/149 (28%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEP---VKLWDRTEQSAMPSDL 57
             + IDIET         G   Y +   I   A    ++           + +  +P  +
Sbjct: 5   KIVVIDIETT--------GFDIYND--EIIEFAALCIEEGEEAEAFSVLISPRRQVPERI 54

Query: 58  LQY-----------------------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           L+                        L  + ++ V HN  F+    ++ L I   +  W 
Sbjct: 55  LRLTGISPEELKQAGSLHAYRDKILDLFQDAII-VGHNVEFDLGFLEQALTIHFENTLW- 112

Query: 95  CTSVLARTN--GLP-SSLKNACLALNFSE 120
            T  +AR     +P   L +   +L  + 
Sbjct: 113 DTLEIARILYPNMPKYKLGDLTKSLGLTP 141


>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
          Length = 1092

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 21/170 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D+E  S +            Q    L   +   E + +     ++ +   L     
Sbjct: 269 ELAVDLEAHSYRSF----------QGFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFA 318

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +    ++  G+ +       T   AR  G+          L+F    
Sbjct: 319 DPGVVKVLHGADSDVAWLQRDFGLFL--ANLFDTGQAARVLGMRG--HGLAHLLDF---- 370

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                G     RF        P      ++ ++      YC   ++A   
Sbjct: 371 ---YCGFKADKRFQLADWRVRPLTPEMLHYARSDTHHLLYCYDKLKAALA 417


>gi|156539953|ref|XP_001602202.1| PREDICTED: similar to AT02241p, partial [Nasonia vitripennis]
          Length = 1031

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 96/341 (28%), Gaps = 38/341 (11%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            +   + S        +  Q      LT+                     +R  I A +G
Sbjct: 636 QNVNSKNSTNYINFGAIIPQVIVSGTLTRRAVEPTWMTASNAHCERIGSELRGIINAPSG 695

Query: 374 KKLVVADLAGIEARVLAWIAGE--DWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KE 427
             ++ AD+   E  + + I            +           K+  T +  V+      
Sbjct: 696 YSIIGADVDSQELWIASIIGDAFKKDIKIHGSTPFSWMTLIGNKSDGTDMHSVTAKAIGI 755

Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
            R   KV+  A  Y  G K  + +       +      +KS   +   +  + +      
Sbjct: 756 NRDQAKVLNYARIYGAGQKFAERLLKQFNPSITDKEAALKSKHIYLMTKGKKYY------ 809

Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547
              +     + +        +A+      + Q+ K L +      +  G   +    ++ 
Sbjct: 810 -RLKKQYVSENLSNKLYTSYEAF-----KISQIHKKLRDEVFEKGKWIGGSESVMFNSLE 863

Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607
            +  +       +    SR L Y                  +   +       +VQ+ + 
Sbjct: 864 EIAEQNEPSTPFLNCRLSRALEY-----------------EKNEKFLPTKINWVVQSGAV 906

Query: 608 D---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           D   ++   M+   K+   + L+ HDE+    P    ++  
Sbjct: 907 DFLHLILVTMRWLMKDKARLCLSFHDEVRYLVPSEYKYNAA 947



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 36/176 (20%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           + D++     D  +   MP            + + HN  F+R+  K+   ++  + +++ 
Sbjct: 185 SVDNKE--QIDVDKFQQMPK-----------IIIGHNVSFDRVRVKEQYWLNPSATKFLD 231

Query: 96  TSVLARTN-----------------GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
           T  L                          LK+    LN    + K   G  L  +    
Sbjct: 232 TMALHICISGLSSYQRAILKSTNSKDEHEHLKSISS-LNSLSDIHKFYYGFNLNKQGRDI 290

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
            ++    D  +  +         YC  DV AT ++FK++ P+             +
Sbjct: 291 FMNGEIQDIKKQFNESM-----LYCASDVVATHKIFKKMFPIFIKRFPHPATLAGM 341


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P    G     E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDP---KGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          +  D L+++ D     V HN+ F+           K+     +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFIADS--KLVIHNAPFDVKFLNHELSLLKRAEIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
           +  I T V+AR+   G   SL   C      
Sbjct: 119 EHAIDTLVMARSMFPGSKYSLDALCKRFKVD 149


>gi|229472461|gb|ACQ72745.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRAVKTVTYAFLYGAGDAKLGKSFDAQLTESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGYINLCDGRRC 144


>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
          Length = 929

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 42/149 (28%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEP---VKLWDRTEQSAMPSDL 57
             + IDIET         G   Y +   I   A    ++           + +  +P  +
Sbjct: 5   KIVVIDIETT--------GFDIYND--EIIEFAALCIEEGEEAEAFSVLISPRRQVPERI 54

Query: 58  LQY-----------------------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
           L+                        L  + ++ V HN  F+    ++ L I   +  W 
Sbjct: 55  LRLTGISPEELKQAGSLQAYRDKILDLFQDAII-VGHNVEFDLGFLEQALTIHFENTLW- 112

Query: 95  CTSVLARTN--GLP-SSLKNACLALNFSE 120
            T  +AR     +P   L +   +L  + 
Sbjct: 113 DTLEIARILYPNMPKYKLGDLTKSLGLTP 141


>gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 307

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 74/294 (25%), Gaps = 39/294 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWQP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 NIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFSILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++  + +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAIL 290
                  +   +   L       L ++        +  +      L    +A  
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 23/140 (16%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE----------PVKLWDR 47
           S + ID+ET    P    L +V    + +   I   +   D                   
Sbjct: 5   SFVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAM 64

Query: 48  TEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
                   +++  L      +  VAHN+ F+    +      G  +P+  +  T+ LAR 
Sbjct: 65  LAGKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY-DTAELARV 123

Query: 103 ---NGLPSSLKNACLALNFS 119
                    L      L   
Sbjct: 124 ALPLARNHRLATLAELLGLP 143


>gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 306

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWDRTEQSAMPS 55
           +  L+ID E               +    ++L     +      + V L D  +Q  + +
Sbjct: 20  IKTLWIDTE----------VADYKSRNPRLSLIQVLDNPQDMSGDRVYLLDVLDQPNIIA 69

Query: 56  DLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS-----VLARTNGLP-SS 108
           + ++  + +  +  V HN+ ++             +K   CT      +      LP   
Sbjct: 70  EFIEKIMINSAIEKVFHNASYDLKFLGNK-----KAKNITCTLEMVKKIPYHILPLPNYQ 124

Query: 109 LKNACLAL----NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           LK    AL    N  +     + GK  +            Y            L     K
Sbjct: 125 LKTIATALCSFNNIDKQEQTSDWGKRPLTEEQIEYA----YLDCIYLAQIHSNLLSLQAK 180

Query: 165 RDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
            + E AT +L       S  E+   LL+        R+     ++ Q +      KL   
Sbjct: 181 ANPEPATEDLTSLSTRYSQLEQQWKLLNSEFEHLQERM--KKAMQAQNISETSYHKLTSY 238

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
                        +    +          +    +
Sbjct: 239 DRTTVKATFSELARLAQTQDI---DLDFPITLTQK 270


>gi|157138880|ref|XP_001647551.1| DNA polymerase gamma [Aedes aegypti]
 gi|108865347|gb|EAT32219.1| DNA polymerase gamma [Aedes aegypti]
          Length = 657

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 86/313 (27%), Gaps = 42/313 (13%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P+      +  + ++      + A         +R+ + A  G K+V AD+   E  + 
Sbjct: 248 IPQVVVCGTLTRRAMEPTWMTASNAQ-RERIGSELRAMVQAPKGYKMVGADVDSQELWIA 306

Query: 390 A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           +       AG                       +    +     R   KV+  A  Y  G
Sbjct: 307 SVLGDGHAAGIHGATPLGWMTLSGSKAAKTDMHSV-TAQAVGISRDHAKVINYARIYGAG 365

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW--MQDQYPEFAVKDKLIGTA 502
               + +         +     K+   F   +  + ++L    +D++P            
Sbjct: 366 QNFAERLLKQFNPTFSEAEARSKAMKMFALTKGKKFYYLKPDYRDEFPHKGY-------- 417

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                 +     +      K + E F     EGG+ SA       RL             
Sbjct: 418 ------SGYEALKMAKVCNKAVDEMFEKARWEGGTESA----MFNRLEEIAGSEAPVTPF 467

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
              R     + +         T                +VQ+ + D   ++   M+    
Sbjct: 468 LGGRLSRALEPQEGTEERFLPTR------------INWVVQSGAVDFLHLMLVSMRWLMG 515

Query: 620 NGYDIVLTVHDEI 632
           N     L+ HDE+
Sbjct: 516 NRVRFCLSFHDEV 528


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPQQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GID-IPS 90
                          +  D L+++ D     + HN+ F+       L       I  +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRTDIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 ANTIDTLVMARSIFPGSKYNLDALCKRFKVD 149


>gi|262212405|gb|ACY35819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA        +  +  G    V           D
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQVNAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 65  KI-GISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|229472431|gb|ACQ72730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYASILLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|15668541|ref|NP_247339.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495934|sp|Q57811|Y365_METJA RecName: Full=Uncharacterized protein MJ0365
 gi|1499152|gb|AAB98356.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 176

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M+K  IDIET    P+             I        D  + L D   +  +  +    
Sbjct: 1   MAKAIIDIETTGLNPMEH----------RIVAIGVKLGDRDIILMD-ESEYYLLVNFWDT 49

Query: 61  LRDETVMC-VAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           +  E +   +  N  F+    K ++L   +  K +                 +    LN 
Sbjct: 50  VEKEGIEKIIGFNIDFDWQFLKLRSLYHRLKIKHFR----------KYQGRVDLRQILNG 99

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           S       +G  L+       ID P  D   +   + W+ F E    + +  R++ + L 
Sbjct: 100 SGGQY--RKGTKLVDYCRFLGIDVPEDDANGSEIPELWEKFEEEGDEEAK--RKICEHLK 155

Query: 179 PLSDGERDLWLLDQTI 194
              +   +L+ +    
Sbjct: 156 RDLERTWELYKILVDC 171


>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
 gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
          Length = 242

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYA---------------------EQAVITLCA 34
           M ++  D ET    P     + ++G    +                     E   +   +
Sbjct: 1   MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPERDMPEEAFRVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
            A+     K         +    L+++ D     VAHN+ F+               I +
Sbjct: 61  TAFLTGQKKF------REIAEAFLEFVADAQ--LVAHNAEFDMRFVNAELAMLGLEAIAA 112

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
            R + T  +AR     +  SL   C      
Sbjct: 113 DRVVDTLTIARRLHPGAANSLDALCQRYGVD 143


>gi|310818189|ref|YP_003950547.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309391261|gb|ADO68720.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 630

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 75/331 (22%), Gaps = 86/331 (25%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVL----AWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
           +R    A  G      D  G+E R +     W  G      A  +G D++    A+    
Sbjct: 288 IREVHEARPGYVFCSVDYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGE 347

Query: 420 PI----------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469
                       D V+   R + K++    G           A                 
Sbjct: 348 SYAGLLAKVKAKDPVAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADM 407

Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529
              E           M  +                 + + W A         +DL     
Sbjct: 408 CGVERVPVTVQRKPKMVCRT---------CVEVARELDEKWLAAWPE----QRDLQRKAK 454

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            +   GG                                         + +    + ++R
Sbjct: 455 SLTYGGG----------------------------------------VADVMIPGANILR 474

Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----------GYDIVLTVHDEIVSETPDT 639
                 ++     Q +       GM   ++           G  +VL VHDE++SE    
Sbjct: 475 GACGYTQILNTPFQGLGAVGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISELLAD 534

Query: 640 PYFSVGTLCS----LM-----TKNPSWAKGL 661
               +         LM        P  A  +
Sbjct: 535 DQQRLHDAAERKALLMRDAMKETTPDLAAAV 565


>gi|229472211|gb|ACQ72620.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRKLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYASILLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
 gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVI-----TLC---AYAWDDEPVKLW-----D 46
           M  + ID ET + +      V  A+ E   +      L       +    +++      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVARRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
             +    P  + ++L D    + +AHN+ F+  +        G  +P     CT  +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSSLKNACLALNFS 119
                    L      L   
Sbjct: 121 VFPDPAGHGLAKVAGRLGIR 140


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPRQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GID-IPS 90
                          +  D L+++ D     + HN+ F+       L       I  +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRTDIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 ANTIDTLVMARSIFPGSKYNLDALCKRFKVD 149


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L    V     A++          + +    W        
Sbjct: 1   MNFIAMDFETASAKRYSACSLALTIVRDNQIADEFYTL-----INPQTPFFWRNVQIHGI 55

Query: 46  ---DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D  +    P     ++       + +AHN+ F+  + K   +  GI+ P+ + + T 
Sbjct: 56  HERDVADAPTFPEVWEHIKGFYTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115

Query: 98  VLARTNGLPSS---LKNACLALNFS 119
           V +R      S   L   C ALN  
Sbjct: 116 VSSRRLLPGLSNYKLNTVCDALNID 140


>gi|256159482|ref|ZP_05457250.1| Rnd, ribonuclease D [Brucella ceti M490/95/1]
 gi|256254768|ref|ZP_05460304.1| Rnd, ribonuclease D [Brucella ceti B1/94]
 gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
 gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
 gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
 gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
          Length = 385

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLMQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|229472569|gb|ACQ72799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 15/158 (9%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R    AS G+++V ADL+G+E R LA        +  +  G    +        
Sbjct: 7   PSDPEFRRLFRASPGQRMVGADLSGVELRCLAHY------LAGYDGGRYGEILLNDDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     + +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDQKI---GLSYDKSLSPNKAKAKGKEIRQAYIDA 116

Query: 479 ESHHLWM---QDQYPEFAVKDKLIGTACELVKKAWRAK 513
                 +     Q  E      +     +++  +    
Sbjct: 117 IDGLDKLLKDIKQASERGYVRAI--DKRKVLVDSSHKA 152


>gi|170041336|ref|XP_001848422.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167864931|gb|EDS28314.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 982

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 54/227 (23%), Gaps = 45/227 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSD-LLQYL 61
           +  D E      L   G         IT+           ++D       +P   + Q L
Sbjct: 506 ISFDCE---GINLGVRG--------QITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVL 554

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----------PSSLK 110
             E V+ V H+   + +       I +       T                      SL 
Sbjct: 555 EAEKVIKVIHDCRNDSVNLYNQFQIMLR--NVFDTQSAHAVLQFQDQGKQVYKVKNVSLN 612

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEA 169
             C   N + +  K               + +      +    +        Y   DV  
Sbjct: 613 TLCEMYNATVNPMKD-------------QLKNVYRRDQKYWARRPLTRDMLLYAAGDVLI 659

Query: 170 TRELFKRLIPLSDGERDLWLLDQ-----TINDRGYRIDLDLVLKLQE 211
                  L   +  + +   L        I      +D+ +  K ++
Sbjct: 660 LINEQLYLNMATSIKPEFRELLAELCTEQILMLIRPVDVKMRKKQRK 706


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY--AWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ +D ET    PL    +        I             V       +  MP++  
Sbjct: 1   MREIVLDTETTGLDPLRGDRL------VEIGCVEIYNRMPTGQVYHQYINPERDMPAEAF 54

Query: 59  -------QYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                  ++L D+                   V HN+ F+         +     IP +R
Sbjct: 55  AVHGLSSEFLADKPVFAQVADAFIDFIGDAPLVIHNASFDIGFINAELARLSRAAIPRER 114

Query: 93  WICTSVLARTNGLPSS--LKNACLALNFS 119
            + T +LAR      S  L + C      
Sbjct: 115 LVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
 gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
          Length = 738

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 36/181 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ ID+E              Y     IT     +  ++   +        +  DL +  
Sbjct: 240 EIAIDLE-----------HHDYRSYYGITCLMQISNREQDWIVDTLALHDDL-RDLNEIF 287

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            +  ++ V H +  + I  ++ LG+ I       T   ++  G P  SL          +
Sbjct: 288 ANPAILKVLHGANMDIIWLQRDLGLYI--VSLFDTYHASKKLGFPKFSLAYLLENFAHFK 345

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K +     I                            +Y + D      ++ +L   
Sbjct: 346 TSKKYQLADWRIR--------------------PLTDAMMQYARADTHFLLNIYDQLRNK 385

Query: 181 S 181
            
Sbjct: 386 L 386


>gi|229472289|gb|ACQ72659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 377

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 74/294 (25%), Gaps = 39/294 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWQP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 NIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFSILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++  + +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAIL 290
                  +   +   L       L ++        +  +      L    +A  
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
 gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
          Length = 235

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 38/147 (25%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------AYAWDDEPVKL 44
           M ++  D ET               E   I +                      DE V +
Sbjct: 1   MREIIFDTETTGLN----KESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAI 56

Query: 45  WDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
              T           D++  L D  +    VAHN+ F+        ++     +     I
Sbjct: 57  HGLTNERLKDEKKFDDIVDALLDFIDGATIVAHNANFDIGFLNAELERVNKPLVSINHVI 116

Query: 95  CTSVLARTNGLPS--SLKNACLALNFS 119
            T  +AR        SL   C      
Sbjct: 117 DTLAIARRRFPTGPNSLDVLCKRFGID 143


>gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
 gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
          Length = 244

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 48/156 (30%)

Query: 2   SKLFIDIETRS------PQP---------------LPKVGVWAY--------AEQAVITL 32
            ++ +D ET          P               L +  +  Y        AE A I  
Sbjct: 7   RQIILDTETTGFYHSAAENPDRLIEFAGLEMVNRQLTENTLHLYIHPQRDIPAEAAAIHG 66

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF-KKTLGIDIP 89
                        D+ E   + + + Q + D  +    + HN+ F+      +   + +P
Sbjct: 67  ITL----------DQLEGKPVFAQVAQQIFDFLKGAELIIHNAKFDIGFLNAEFARVGLP 116

Query: 90  SK----RWICTSVLAR--TNGLPSSLKNACLALNFS 119
                   I T  +AR    G  ++L   C  L   
Sbjct: 117 PIDSVCSVIDTLEMARNKYPGQKNNLDALCNRLGVD 152


>gi|150951537|ref|XP_001387875.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
           stipitis CBS 6054]
 gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Pichia stipitis CBS
           6054]
          Length = 792

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 22/191 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S++ +D+E              Y     I      +  D+   + D          L   
Sbjct: 253 SEIAVDLE-----------HHDYRSYYGIVCLMQISNRDQDW-IIDTLALRDDLECLNTV 300

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS 119
             +  ++ V H +  + I  ++ LG+ I       T   +++ G P  SL          
Sbjct: 301 FTNPHIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASKSLGFPKFSLAYLLETFAHF 358

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLI 178
           +   K +     I       +        R++      +F +   + ++A   +L + L 
Sbjct: 359 KTSKKYQLADWRIRPLSPPMM-----AYARSDTHFLLSIFDQLKNKLIDAGNEKLQRVLF 413

Query: 179 PLSDGERDLWL 189
                 +  + 
Sbjct: 414 DSRQVAKRRFE 424


>gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 384

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A  D  V +    E   +       + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPDLEVIVDPLAEGLDLAPFFK-LMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ V H +  +  +    LG ++       T V A   G   S              
Sbjct: 69  NGDVIKVFHAARQDIEIIF-HLG-NLIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 K       K S  +       +           Y   DV   R+++  L    +
Sbjct: 115 YDQLVQKIKNIHIDKSSRFTDWSRRPLSEKQLD------YALADVTHLRDVYLTLNAELE 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRASWLSEEM 180


>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
 gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
          Length = 377

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 79/278 (28%), Gaps = 46/278 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQY 60
            + +D E         + V  +  +A +       D E   L D      +     L + 
Sbjct: 26  FVALDTE--------FMRVDTFYPKAGLIQIG---DGERAYLID---PLLIVDWQPLGEL 71

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALN 117
           L D  V+ V H    +  +  +  G     +    T + A    L  S+         L 
Sbjct: 72  LEDAGVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNLGFSMGYSRLVQEVLG 129

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 ++ +G+       +   D                    Y   D     ELF  L
Sbjct: 130 L-----ELPKGETRSDWLQRPLSD----------------TQVSYAAEDAVHLAELFAAL 168

Query: 178 IPLSDGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234
            P    ++  W+L+            ++ + + +  +L  +  ++    + +L     R 
Sbjct: 169 RPRLSDDKYAWVLEDGAELVAALRREVEPETLYRDVKLAWKLGRQQLAVLRELCAWRERE 228

Query: 235 SRQTYALR-MYLFLITGIDLVDMSEGTLKSILSHSNIT 271
           +R     R   L   +   +       L ++     + 
Sbjct: 229 ARSRDVPRNRILKEHSLWPMAKNQPDNLSALAKIDEMH 266


>gi|229472603|gb|ACQ72816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKRGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGYINLCDGRRC 144


>gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 377

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 74/294 (25%), Gaps = 39/294 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWQP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 NIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFSILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++  + +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAIL 290
                  +   +   L       L ++        +  +      L    +A  
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L    V     A++          +      W        
Sbjct: 1   MNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTL-----INPHTKFFWRNTQIHGI 55

Query: 46  ---DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
              D       P     +        + +AHN+ F+  + +       I++P+ + + T 
Sbjct: 56  HERDVQNAPDFPEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTV 115

Query: 98  VLARTNGLP---SSLKNACLALNFS 119
             +R          L   C ALN  
Sbjct: 116 ASSRQLIPGLTNYKLNTVCDALNID 140


>gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114]
 gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114]
          Length = 387

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD    + D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAMPGEDDSTGCIVDPLAPGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F   +  ++  +    T V A   G          
Sbjct: 67  EPLYALFRDTSVVKVFHAARQDLEIF--YVDAEVFPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ R  K  +D        +           Y   DV   RE++
Sbjct: 118 QVGYET----------LVRRIAKKPLDKTSRFTDWSRRPLTDAQMK-YALADVTHLREVY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EFLAEKLEETGRSRWV 182


>gi|229472319|gb|ACQ72674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 9/146 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R    A+ G+ +V ADL+GIE R+LA          A  +             +
Sbjct: 7   PSDKDFRKLFQATPGQVMVGADLSGIELRMLAHY-------LARYDAGRYAEVLLHGDIH 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                     R   K +  A  Y  G     ++          +        +  +    
Sbjct: 60  QENADKIGISRKQVKTVTYAFLYGAGDAKLGRSYDPQLNEKEAKRKGKEIRQAYMDAVPG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTAC 503
            E+    ++ +  E    +   G  C
Sbjct: 120 LETLVTAVKSKA-ESGYINLCDGRRC 144


>gi|119478758|ref|XP_001259434.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
 gi|119407588|gb|EAW17537.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
          Length = 1109

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 69/264 (26%), Gaps = 9/264 (3%)

Query: 320 WSGCVFQ-PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            +G        +  Q      +T+                     +++ I A  G   V 
Sbjct: 631 STGEKSNRLGFILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYVFVG 690

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE----QRAIGKV 434
           AD+   E  + + + G+        N         +KA  T +   +       R   KV
Sbjct: 691 ADVDSQELWIAS-LVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTAHILGISRNDAKV 749

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                 Y  G K   T+       + +      +T  + + +   +    + +       
Sbjct: 750 FNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATKLYRETKGTRTTRRILSENPFWRGG 809

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            +  +    E      R        L   +TE         GS    R+    +     +
Sbjct: 810 TESFVFNKLEEFADQER---PRTPALGAGITEALMRRFINKGSFMTSRINWAIQSSGVDY 866

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCS 578
              + I +    R    D +   +
Sbjct: 867 LHLLIISMDYLIRRFNIDARLAIT 890


>gi|229472607|gb|ACQ72818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWA-------YAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET S +      +           ++          + +    W        
Sbjct: 1   MNFIAMDFETASAKRFSACSLAITIVRNSQIQDEFYTL-----INPQTPFFWRNTQVHGI 55

Query: 46  ---DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
              D  +    P     +Q       + +AHN+ F+  + K       I+ P  + + T 
Sbjct: 56  HERDVKDAPTFPEVWEHIQEFFTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTL 115

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
             +R          L   C  LN  
Sbjct: 116 KTSRQLFPAFPNHKLNTICDQLNID 140


>gi|39973915|ref|XP_368348.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
 gi|145018155|gb|EDK02434.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
          Length = 854

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 47/160 (29%), Gaps = 25/160 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
            ++ +D+E     T                  +++L   +  ++   +            
Sbjct: 277 KEIAVDLEHHDFRTY---------------HGLLSLMQISTREKDWIVDTLKPWRQQLEI 321

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L +   D +++ V H +  + +  ++ LG+ +       T   A     PS  K+    L
Sbjct: 322 LNEVFADPSIVKVFHGAFMDIVWLQRDLGLYV--VGLFDTFHAAEALMYPS--KSLA-YL 376

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                  + ++         +   +   Y      H   +
Sbjct: 377 LKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLY 416


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPRQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GID-IPS 90
                          +  D L+++ D     + HN+ F+       L       I  +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRTDIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 ANTIDTLVMARSIFPGSKYNLDALCKRFKVD 149


>gi|195119318|ref|XP_002004178.1| GI19770 [Drosophila mojavensis]
 gi|193909246|gb|EDW08113.1| GI19770 [Drosophila mojavensis]
          Length = 991

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 80/290 (27%), Gaps = 42/290 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYL 61
           + +D E      L   G         ITL           L+D     AM SD  L   L
Sbjct: 540 ISLDCE---GINLGIKG--------EITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLL 588

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----------SLK 110
             + V+ V H+   + +      GI +       T                      SL 
Sbjct: 589 EHDQVIKVIHDCRNDAVNLYLQFGILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLN 646

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           + C   N   +  K +     I R  +      P                 Y   DV   
Sbjct: 647 SLCEQYNAPCNPIKDQL--KQIYRRDQKFWAKRPLTRE----------MMLYAAGDVLVL 694

Query: 171 --RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL--KLQELIAQERKKLDEDIVK 226
              +LF  L      E      +        +I  + V   K Q  ++ E   L + + +
Sbjct: 695 IHEQLFGTLAQQIKPENRQLFSELCTEQILMQIKPNEVKIRKKQRKVSTEVSDLKQKLAQ 754

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
            +  I+ S+R+   LR         + +       K +    +     KD
Sbjct: 755 TSKSIVLSNREIRLLRYMDLTEEEKERLKGYYKVAKKLEKMESAGNPNKD 804


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------AYAWDDEPVK------ 43
           M ++  D ET       +  +    E   I L              + +D  V       
Sbjct: 1   MREIIFDTETTGL----ESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAV 56

Query: 44  -------LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                  L D+ + + +   + ++   +    VAHN+ F+       F +     + ++ 
Sbjct: 57  HGITDEFLKDKPKFAEVIDQIREFF--DGARWVAHNATFDMGFINAEFARLGIEPVSAEL 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
              T  LAR      P+SL   C      
Sbjct: 115 VTDTLSLARRKNPMGPNSLDALCRRYGID 143


>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
 gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     L         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDALRG---DRLVEIGCVEIINRMPTGQVFHRYINPERDMPAEAFAVH 57

Query: 39  DEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
               +            +  + L+++ D     V HN+ F+         +     IP +
Sbjct: 58  GLSSEFLADKPLFH--EIVEEFLEFIGDA--PLVIHNASFDIGFINAELDRVKRAAIPRE 113

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
           R + T +LAR      S  L + C      
Sbjct: 114 RLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GI-DIPSKRWICTSVLARTNGL- 105
             +  D   +++++    + HN  F+            I +I  +R I T ++AR     
Sbjct: 83  DGIVQDFRDFIQED--TLIIHNGHFDIKFINNEFQKLNIPEISFERVIDTMLMARKLYPR 140

Query: 106 -PSSLKNACLALNFSEHLTKMEEG 128
            P+SL + C   N  +    +  G
Sbjct: 141 QPASLDSLCDRFNIDKSSRSLGHG 164


>gi|262212371|gb|ACY35802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
             +   R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKTGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
 gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
          Length = 395

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 30/192 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D           +  + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQMAAPDGTAVLVDPLAPGIDLDPFIALMA 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE  + V H++  +  +    L   I    +  T V A   G   S              
Sbjct: 72  DERTVKVFHSARQDLEII--WLIGGILPHPFFDTQVAAMVCGYGDS------------VS 117

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +        A+  K S  +       +           Y   DV    ++++ L+    
Sbjct: 118 YEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLT------YALSDVTHLVKIYEVLVAELL 171

Query: 183 GERDLWLLDQTI 194
                  LD+ +
Sbjct: 172 RTDRGAWLDEEM 183


>gi|195401414|ref|XP_002059308.1| GJ18283 [Drosophila virilis]
 gi|194142314|gb|EDW58720.1| GJ18283 [Drosophila virilis]
          Length = 1176

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 68/238 (28%), Gaps = 42/238 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYL 61
           + +D E      L   G         ITL           L+D     AM SD  L   L
Sbjct: 727 ISLDCE---GINLGIKG--------EITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLL 775

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----------SLK 110
             + V+ V H+   + +      GI +       T                      SL 
Sbjct: 776 EHDQVIKVIHDCRNDAVNLYLQFGILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLN 833

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSID------SPPYDCTRANHVQAWQLFGEYCK 164
           + C   N   +  K +  K +  R  K             Y       +   QLFG   +
Sbjct: 834 SLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGSLAQ 892

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           +     R+LF  L            +   I     +I      K+   ++  ++KL +
Sbjct: 893 QIKPENRQLFSELCTE--------QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLTQ 941


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 21/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDE---PVKLWDRT------- 48
            +F D+ET    P     +   A   +   I    +   +     P  + + T       
Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKIKNKHIVDTFSKIVNPHRPIPPFITNLTGITNQMV 413

Query: 49  -EQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNG 104
            +     + +  +      ++ VAHN+ F+    +  L       +  +I T  ++RT  
Sbjct: 414 EDGEEEEAAVKAFCEFCGDLILVAHNAKFDMGFMEIALNAHHLENNITYIDTLAMSRTLI 473

Query: 105 LP---SSLKNACLALNFSE 120
                 +LK          
Sbjct: 474 PTINKHNLKKLASYFKVDM 492


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           M ++  D ET    P+         E   + L     +           +    A+   +
Sbjct: 1   MREIVFDTETTGLSPING---DRLVEIGCVELIN-KVETGNSFHCYFNPQRPMDAVAESI 56

Query: 58  ----------LQYLRDET---------VMCVAHNSLFERILFKKTL---GID-IPSKRWI 94
                          D+             VAHN+ F+       L   G+  I   R +
Sbjct: 57  HGLSDAFLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMV 116

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +AR    G   +L   C      
Sbjct: 117 DTLAIARGKHPGAKHTLDALCTRYGID 143


>gi|17365997|sp|Q9QYV8|DPOG1_RAT RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|5912568|emb|CAB56206.1| DNA polymerase gamma [Rattus norvegicus]
 gi|149057256|gb|EDM08579.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
 gi|149057257|gb|EDM08580.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
          Length = 1216

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/399 (11%), Positives = 97/399 (24%), Gaps = 48/399 (12%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    F   S  G           LP
Sbjct: 770  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-PSFDEESHYGAI---------LP 819

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + A 
Sbjct: 820  QVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIAAV 878

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   KV      Y  G   
Sbjct: 879  LGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQSF 938

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    +           +   + +     +  
Sbjct: 939  AERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRY---------RLSDDGEWLVKQLNVPV 989

Query: 508  KAWRAKHQGVLQLWKDLTEGFA--CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                     +  L K   E        +                +  + +       P +
Sbjct: 990  DRTEDGWVSLQDLRKIRREASRKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTPRT 1049

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
              L     +     +        R           +VQ+ + D   ++   MK   +   
Sbjct: 1050 PVLGCCISRALEPSVVQGEFMTSR--------VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1101

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1102 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1140



 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 47/225 (20%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHL 122
           + V HN  F+R   ++   I     R++ T  +            SL             
Sbjct: 248 LVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWMGAKQGKHKTQH 307

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHV----------------------------- 153
                 K+               D + AN++                             
Sbjct: 308 PTKRGQKSQKNANGPAISSWDWMDISSANNLADVHNLYVGGPRLAKEPRELFVKGSMRDI 367

Query: 154 -QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL---- 205
            + +Q   EYC RDV AT E+F++ +PL        +    + + G     ++ +     
Sbjct: 368 RENFQDLMEYCARDVWATFEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYL 427

Query: 206 ------VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
                   +LQ  + +   +L  D  +L  G             +
Sbjct: 428 TEAQSTYEELQREMKKSLMELANDACQLLSGERYKEDPWLWDLEW 472


>gi|16758292|ref|NP_445980.1| DNA polymerase subunit gamma-1 [Rattus norvegicus]
 gi|5912570|emb|CAB56207.1| DNA polymerase gamma [Rattus norvegicus]
          Length = 1216

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/399 (11%), Positives = 97/399 (24%), Gaps = 48/399 (12%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L  +       R    F   S  G           LP
Sbjct: 770  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH-PSFDEESHYGAI---------LP 819

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + A 
Sbjct: 820  QVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIAAV 878

Query: 392  IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKV 447
            +    +                 K+  T +   +       R   KV      Y  G   
Sbjct: 879  LGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQSF 938

Query: 448  FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507
             + +       L +     K+   +   +    +           +   + +     +  
Sbjct: 939  AERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRY---------RLSDDGEWLVKQLNVPV 989

Query: 508  KAWRAKHQGVLQLWKDLTEGFA--CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                     +  L K   E        +                +  + +       P +
Sbjct: 990  DRTEDGWVSLQDLRKIRREASRKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTPRT 1049

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
              L     +     +        R           +VQ+ + D   ++   MK   +   
Sbjct: 1050 PVLGCCISRALEPSVVQGEFMTSR--------VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1101

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1102 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1140


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 16/191 (8%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--- 105
               +  +LL +L D  +  + HN  FER        I     +   +  L+        
Sbjct: 75  HLEDIKKELLVFLED--LPLICHNGGFERKFLSYH--IPEIKNQIFDSMELSAILEPWRK 130

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +L +   ++     L K E  + L        + +              +    Y   
Sbjct: 131 EYNLDSLIKSI---TILDKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNII 187

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D +     ++ L      E  L  +   I D  Y +  +   +    + +   + ++   
Sbjct: 188 DKD-----YEFLKYWEWKEYLLKPILFNIEDYPY-VSYEENKRQDVKLKRIPIEYEKYED 241

Query: 226 KLTDGIIRSSR 236
            L +  I ++ 
Sbjct: 242 LLINEEIWNNG 252


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKL-----------WDRT 48
           M+ + ID ET + +      +     +   I         E V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEII--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  EQSAMPSDLLQYLRDETV-----------MCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                P  +   L  + +           + +AHN+ F+  + +   +   I +PS  +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLELYNIKMPSFEYI 112

Query: 95  CTSVLA---RTNGLPSSLKNACLALNFSEHL 122
           CT  L+    +N   + L      L +    
Sbjct: 113 CTMKLSKNFYSNIDNAKLNTVNNFLGYKFQH 143


>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
           polymyxa SC2]
 gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           polymyxa SC2]
          Length = 960

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 44/155 (28%), Gaps = 38/155 (24%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQ------------------AVITLCAYAWDD 39
           M    +D ET    S   + +VG+                          IT       D
Sbjct: 1   MKFAVLDFETTGTQSADDIIQVGLAIIDHDNSISRVYGSYVNPGRSIPPFITGLT-GITD 59

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
           + VK  D      M  +L+  L D  V+ V HN  F+    +  L   G    S R + T
Sbjct: 60  DDVK--DAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQSALDRCGYLPFSGRILDT 115

Query: 97  S----VL-----ARTNGLPSSLKNACLALNFSEHL 122
                ++     +   G  SS              
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFGLAHDRPHQADS 150


>gi|229472219|gb|ACQ72624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
 gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
          Length = 385

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 45/197 (22%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----VKLWDRTEQSAM 53
            + +D E     T                   + L   A+  E     V +    E   +
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAYPGEDADSAVLVDPLAEGLEL 66

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              L    RD +V+ V H +  +  +F   +   +  +    T V A   G         
Sbjct: 67  -EPLYTLFRDTSVVKVFHAARQDLEIF--WVDAGVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             + +            L+ + C+  +D        +    +      Y   DV   R++
Sbjct: 117 EQVGYET----------LVRKICRQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQI 165

Query: 174 FKRLIPLSDGERDLWLL 190
           ++ L            +
Sbjct: 166 YEHLAADLAKTGRSHWV 182


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 38/147 (25%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           M ++  D ET    P+         E   + L     +                A+   +
Sbjct: 1   MREIVFDTETTGLSPING---DRLVEIGCVELIN-KVETGNSFHCYFNPERPMDAVAESI 56

Query: 58  ----------LQYLRDET---------VMCVAHNSLFERILFKKTL---GID-IPSKRWI 94
                          D+             VAHN+ F+       L   G+  I   R +
Sbjct: 57  HGLSDAFLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMV 116

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +AR    G   +L   C      
Sbjct: 117 DTLAIARGKHPGAKHTLDALCTRYGID 143


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 38/147 (25%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           M ++  D ET    P+         E   + L     +                A+   +
Sbjct: 1   MREIVFDTETTGLSPING---DRLVEIGCVELIN-KVETGNSFHCYFNPERPMDAVAESI 56

Query: 58  ----------LQYLRDET---------VMCVAHNSLFERILFKKTL---GID-IPSKRWI 94
                          D+             VAHN+ F+       L   G+  I   R +
Sbjct: 57  HGLSDAFLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMV 116

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +AR    G   +L   C      
Sbjct: 117 DTLAIARGKHPGAKHTLDALCTRYGID 143


>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 429

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 76/275 (27%), Gaps = 49/275 (17%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + +       + V + D        + +
Sbjct: 67  YVTIDTEFMRERTYW---------------PELCVVQLG-GADCVAVIDTLAPELDLAPV 110

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L D  V+ V H    +  +F    G     +    T V A   G           + 
Sbjct: 111 GELLADPAVIKVFHACRQDIEIFLLRFGSI--PQPMFDTQVAAMVAGF-------GDQVG 161

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +   ++ +  G        K    S       +           Y   DV   R +++ L
Sbjct: 162 YDTLVSSLTGGH-----IDKAHRFSDWSRRPLSQAQID------YAAADVTHLRGVYETL 210

Query: 178 IPLSDGERDLWLLDQTI---NDR-GYRID-LDLVLKLQ-ELIAQERKKLDEDIVKLTDGI 231
               + E  L  + + +   ND   YR D + +  +L+     +    L   I    +  
Sbjct: 211 RDRLEKEGRLAWVSEEMAVLNDPATYRTDPVTMWERLRPRTNNRRYLGLLRAICAWREVE 270

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266
            +           +   + +++   S    +S+  
Sbjct: 271 AQRLNIPRQ--RLIKDESLLEIAATSPADAESLAQ 303


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPRQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          +  D L+++ D     + HN+ F+           K+T    +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRTEIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 ANTIDTLVMARSMFPGSKYNLDALCKRFKVD 149


>gi|125999975|ref|YP_001039646.1| DNA polymerase A domain-like protein [Erwinia amylovora phage
           Era103]
 gi|121621831|gb|ABM63405.1| DNA polymerase A domain-like protein [Enterobacteria phage Era103]
          Length = 833

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 75/309 (24%), Gaps = 36/309 (11%)

Query: 202 DLDLVLKLQELIAQERKKL--DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           + D V ++         +    E       G          +          ++    + 
Sbjct: 378 NRDTVKQVLYEFGWRGVEFNDTEQDHMDEFGEWPKLWSGK-INEKSIEAWKKNMEAKGKK 436

Query: 260 TLKSILSHSNITQL---AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316
             +  L  +    L      ++  +            +L       G+ RG      A+ 
Sbjct: 437 VPEWCLGIARWYILSSRRNQILNYKDQIKYDQTGIWPSL-----PGGKKRGCRGILPAAF 491

Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQAL-----------NRGETIADPLGLASDCVR 365
           +        +   + ++  S     +                 R   + +        +R
Sbjct: 492 SRELGITAARFYEIYKRWPSLPEDGEWRVPAIAISIGTSTFRMRHRVLVNIPSRGLYPLR 551

Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425
              IAS GKK++  D AG+E RVLA    +              V  +        +K  
Sbjct: 552 DLFIASKGKKVLGCDGAGLELRVLAHFMNDPE---------YSEVVLHGDIHTHNQEKAG 602

Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485
              R + K    A  Y  G      +       +              +  Q       +
Sbjct: 603 LPLRDMAKTFIYAFLYGSGDDNLAAVC-----GVSVKEMKAIRARFMAELPQLARLMAAV 657

Query: 486 QDQYPEFAV 494
           Q    E+  
Sbjct: 658 QASGNEYGY 666


>gi|85708302|ref|ZP_01039368.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
 gi|85689836|gb|EAQ29839.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
          Length = 515

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 93/329 (28%), Gaps = 53/329 (16%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                + E   + L Q     G  ID   + + +     +     +D     D  I +  
Sbjct: 150 FERFFNVEVPAYRLLQLSMSAGISIDTSGLSEKRGQAEHDYFVFLKDYSANHDMPIETPS 209

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
           +       L     +D V +       IL      +   D  L     +  A  K+    
Sbjct: 210 RRRIKAKLLQEGFELDGVSVDY-----ILEFVPHDRDFGDDTL--TLLALDAARKVLGSL 262

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
              ++  R    +     SRT R        QN+P++                       
Sbjct: 263 TLSTNTTRPLVDVF---GSRTSRVQIRSPNLQNIPKKY---------------------- 297

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   RS I + +  +L   D    E  ++A ++G++   + +A G+   +    + 
Sbjct: 298 --------RSIINSRDDAQLCYVDFDQFEVGIMAALSGDEMLKELYAAGDMYELFATTQL 349

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                       R   K + L+  Y    K     A   G+      +  K+   F  + 
Sbjct: 350 GLVDN-------RKAAKQLFLSYAYGMSRKALVDAAVSLGV------ERQKAKKAFRQFR 396

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACEL 505
             E     +  ++ +      ++G     
Sbjct: 397 GYEDWKRTVWTEFQKAGRVSSILGNHFRR 425



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 11/137 (8%)

Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              K L +    +  E                 +R          + R            
Sbjct: 369 MSRKALVDAAVSLGVERQKAKKAFRQFRGYEDWKRTVWTEFQK--AGRVSSILGNHFRRE 426

Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-NGYDIVLTVHDEIVSE-- 635
                T +  R           +VQ  +  I    + +        + L +HD ++ E  
Sbjct: 427 GQGQLTGKEQRSA------VSQVVQGTASLIFKRALISVASLEDLRVALPMHDALLFEHR 480

Query: 636 TPDTPYFSVGTLCSLMT 652
           + +TP   V    S+MT
Sbjct: 481 SDETPAKVVEVFESVMT 497


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 36/144 (25%)

Query: 6   IDIETRSPQP-----LPKVGVWAY-------AEQAVITLCAYAWDDE----------PVK 43
            D ET    P     + +VG           AE           D E             
Sbjct: 582 FDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQL-----VDPERPLAPESAKIHGI 636

Query: 44  LWDRTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSV 98
             +          +L          + +AHN+ F+       ++  G+       I T +
Sbjct: 637 TSEMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFD-HPVIDTLL 695

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+           L+     L  +
Sbjct: 696 LSAVVHPNQESHRLEAIAERLGLT 719


>gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    PL         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDPLRG---DRLVEIGCVEMFNRMPTGQTYHVYINPERDMPAEAFAVH 57

Query: 39  DEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
               +            +    L+++ D     V HN+ F+         +     IP +
Sbjct: 58  GLSAEFLSTKPVFH--EVADAFLEFIGDA--PLVIHNASFDISFINAELDRIKRAAIPRE 113

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
           + + T +LAR      S  L + C      
Sbjct: 114 QLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L    V     A++          +      W        
Sbjct: 2   MNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTL-----INPHTKFFWRNTQIHGI 56

Query: 46  ---DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
              D       P     +        + +AHN+ F+  + +       I++P+ + + T 
Sbjct: 57  HERDVQNAPDFPEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTV 116

Query: 98  VLARTNGLP---SSLKNACLALNFS 119
             +R          L   C ALN  
Sbjct: 117 ASSRQLIPGLTNYKLNTVCDALNID 141


>gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis]
 gi|29428101|sp|O93530|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog;
           AltName: Full=Exonuclease WRN; AltName:
           Full=Focus-forming activity 1; Short=FFA-1
 gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis]
          Length = 1436

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +    V+   +   + L      ++   L+  +  +  P  L + L DE+V  V     
Sbjct: 76  DIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKV----- 130

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---NACLALNFSEHLTKMEEGKAL 131
                     G+ I   +W    +++        LK         N      +      L
Sbjct: 131 ----------GVGIEGDQWK---LMS---DYELKLKGFIELSEMANQKLRCKEKWTFNGL 174

Query: 132 IARFCKGSI-DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           I    K  +     Y C+  +     +    Y   D  A   ++K+L  +   E D + +
Sbjct: 175 IKHLFKEQLYKRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKLEGMDAHESDSFRV 234

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
                 R    D   V +    +++    L   +         + R    +   L    
Sbjct: 235 -----GREGVADCKGVKRQLTDLSKGLMDLVNQVPNSFGCYTEAVRAV-DILEDLSEKL 287


>gi|229472173|gb|ACQ72601.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472401|gb|ACQ72715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 61/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +  + M          +     +  VHDE
Sbjct: 158 QGSAGCVAKQWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6]
 gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6]
          Length = 377

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 76/274 (27%), Gaps = 38/274 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E      +     +  A      L     D     L D  T  +  P  L   L
Sbjct: 26  FVALDTE-----FMRVDTFYPIAG-----LIQIG-DGVRAYLIDPLTIDNWQP--LAALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + +V+ V H    +  +  +  G          T + A    L  S+            
Sbjct: 73  ENPSVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSM------------ 118

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 G + + +             +        +    Y   D     E++ RL P  
Sbjct: 119 ------GYSRLVQAVLDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPKL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             ++  W+L+       +    +D   V +  +L  +  +     + +L     + +R  
Sbjct: 173 SDDKYAWVLEDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARAR 232

Query: 239 YALR-MYLFLITGIDLVDMSEGTLKSILSHSNIT 271
              R   +   +   L       L ++    ++ 
Sbjct: 233 DLPRNRIVREHSLWPLAKTQPDNLAALGKIEDMH 266


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLARTN---GLPSSLKNAC 113
           L     + VAHN+ F+    ++          W      T +L+       +P +L   C
Sbjct: 353 LFATDAVIVAHNAPFDMAFLRRHA--KASGLAWDHPILDTVLLSAVLFGASVPHTLDALC 410

Query: 114 LALNFS 119
             L+ +
Sbjct: 411 ERLDIT 416


>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
 gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 44/175 (25%), Gaps = 22/175 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
               +D E  S +                 L   +  +E   L D      +   L    
Sbjct: 72  KVFAVDTEQHSLRSFLGFTA----------LIQISTRNED-YLVDTIALHDVMGVLAPVF 120

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D T+  V H +  + +  ++     I       T+        P   K+    L     
Sbjct: 121 ADPTICKVFHGADNDVLWLQR--DFHIYVVNLFDTAKACEVLSKPQ--KSLAYLL----- 171

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             +   G A      +      P       + Q    +  Y    + A  +L  R
Sbjct: 172 --ETYCGVATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYIAGCLIAELKLQDR 224


>gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
 gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 42/155 (27%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M ++ +D ET      S   + ++G               A  +   +  +      MP 
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMNH-------MATGETYHQYINPERG--MPE 51

Query: 56  DLL-------QYLRDE----TVMC-----------VAHNSLFERILF---KKTLGID-IP 89
           +          +LRD+     +             + HN+ F+        + +G+  IP
Sbjct: 52  EAFQVHGLGDDFLRDKPKFAQIGKSFLDFIGTSKLIIHNAAFDIKFLNAELRWMGLPQIP 111

Query: 90  SKRWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
            ++ + T  +A  R  G P+SL   C         
Sbjct: 112 WEQALDTLEIARKRFPGSPASLDALCRRFGIDNTS 146


>gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 377

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 74/274 (27%), Gaps = 38/274 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWAP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPAVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +   D+                   Y   D     ELF  L P  
Sbjct: 129 NIDLPKGETRSDWLQRPLSDTQIS----------------YAAEDAVHLAELFAILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             ++  WLLD       +    +D   V +  +L  +        + +L       +R  
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSCAQLAVLRELCAWREVQARAR 232

Query: 239 YALR-MYLFLITGIDLVDMSEGTLKSILSHSNIT 271
              R   +   +   L       L ++    ++ 
Sbjct: 233 NLPRNRIIREHSLWPLAKTQPDNLGALARIEDMH 266


>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 830

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 29/162 (17%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
            ++ +D+E     T         G+        + L   +  D    +            
Sbjct: 243 KEIAVDLEHHDFRTY-------TGL--------VCLMQVSTRDRDWIVDTLQPWRHKLEV 287

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN-ACL 114
           L     D +V+ V H +  + +  ++ LG+ +       T         P  SL      
Sbjct: 288 LNDVFADPSVVKVFHGAYMDMVWLQRDLGLYVNG--LFDTYFACNLLNYPGRSLAFLLSK 345

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + F            L     +   +   Y      H   +
Sbjct: 346 FVGFDADKQ-----YQLADWRIRPIPEDMLYYARSDTHYLLY 382


>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
          Length = 1271

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 15/123 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E  S +    +            L   + +D+   L D     +   +L +  
Sbjct: 279 KEIAVDLEHHSYRSFQGIT----------CLMQISTEDKD-YLIDTLSLRSELHELNEIF 327

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-NFS 119
              T++ V H +  +    ++   + +       T   A+   LP  SL        N  
Sbjct: 328 TKPTILKVFHGADLDIQWLQR--DLSLYVVNMFDTHQAAKQLNLPYLSLAYLLKHYCNVD 385

Query: 120 EHL 122
              
Sbjct: 386 PDK 388


>gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11]
 gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11]
          Length = 385

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 32/202 (15%)

Query: 1   MSKLFI-D-IETRSPQPLPKVGVWAYAEQ-------AVITLCAYAW---DDEPVKLWDRT 48
           M  +   D +ET   +      V    E        + + L   A+   D+E   L D  
Sbjct: 1   MKTITTTDELETFCQEAAQHPYVTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDPL 60

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
                   L    R+E+V+ V H +  +  +F   +   +       T V A   G    
Sbjct: 61  ADGLSLEPLYALFRNESVVKVFHAARQDLEIF--WVDAQVFPTPLFDTQVAAMVCGF--- 115

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  + +   + K+           K S  +       ++          Y   DV 
Sbjct: 116 ----GEQVGYETLVRKIV-----KQGLDKTSRFTDWSRRPLSDAQ------KTYALADVT 160

Query: 169 ATRELFKRLIPLSDGERDLWLL 190
             R++++ L            +
Sbjct: 161 HLRQIYEHLAAELKRTERSHWV 182


>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 244

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M +L +D ET    P    G     E   + L                       A A  
Sbjct: 1   MRQLILDTETTGLNP---RGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR---- 92
               +   D+ + + +      +++D     + HN+ F+          + +P       
Sbjct: 58  GLTTEFLSDKPKFAEIIDQFRDFIQDAD--LIIHNAPFDIGFLDTEFALLGLPPVSTYCG 115

Query: 93  -WICTSVLARTN--GLPSSLKNACLALNFS 119
             I T   A+    G  +SL   C     S
Sbjct: 116 EIIDTLAQAKQMFPGKRNSLDALCDRFGIS 145


>gi|198433586|ref|XP_002125927.1| PREDICTED: similar to GK24652 [Ciona intestinalis]
          Length = 1122

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 62/575 (10%), Positives = 145/575 (25%), Gaps = 68/575 (11%)

Query: 100  ARTNGLPSSLKNACLALN--FSEHLTKMEEGKALIARFC-----KGSIDSPPYDCTRANH 152
            +    L  + +     L     +   K++  + L          K  +   P   +    
Sbjct: 478  SYLLPLDYNTEEL-KFLGKSIRKERKKLDLIEKLNETANRLPLVKPHMPGAPKWYSELCV 536

Query: 153  VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             +  Q +          T  +  RL+ L      L+ +       GY         +++ 
Sbjct: 537  PEKDQNWKPGATLLSTLT-RVTPRLLRLMWQGCPLYHVKDY--GWGYLCPDQTAPPVEKK 593

Query: 213  IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----------SEGTLK 262
            +  E   L +++    D    + ++  +       I G+                +    
Sbjct: 594  VEDE--DLLKEV----DQESWNKQEVQSNHTPAENIEGLPDGYTFHRLPHAEGAGKNVGS 647

Query: 263  SILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
             +         +  L     +        + I          SS  R+   +    A+  
Sbjct: 648  PLSRDFISHVESGLLSSYNPLDALRCLEINKITSYW-----RSSQKRVLNQIVVEVANDK 702

Query: 318  GRWSGCVFQPQN---------LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
             R         N         +P+      +  + ++ +    +    L      +++ +
Sbjct: 703  RRDCNNTPNEFNNKDMAYSAIVPQAIVCGAVSRRAVERVWLTASNPQ-LDRIGSELKAMV 761

Query: 369  IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS--- 425
             A  G   V AD+   E  + + +       +              K   T +   +   
Sbjct: 762  QAPPGFCFVGADVDSQELWIASLLGDASSAKEHGCTALSWMTLRGNKKEGTDLHSTTAAS 821

Query: 426  -KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
                R   KV      Y  G K           DL +     K    +   +    +   
Sbjct: 822  IGISRDQAKVFNYGRMYGAGKKSSLRSLMQFNKDLSREECIAKVNKLYGITKGEVQY--K 879

Query: 485  MQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543
            +         K  + + +       A       +  +  + +   A + +       R  
Sbjct: 880  LSRDALWIIQKTGIELNSEAMTSGYASFDDVTLIQNVANEASNYTARINRNDLVCGRRWH 939

Query: 544  ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603
              +   +  + +   +   P +  L     +              R           +VQ
Sbjct: 940  GGIESHMFNKVEEISNSKTPKTPALDCKISRALEPGKVNGNFVTTRM--------NWVVQ 991

Query: 604  AISRD------ILCEGMKNATKNGYDIVLTVHDEI 632
            + + D      +    +    K     VL++HDE+
Sbjct: 992  SSAVDYLHLLLVSMRWLIEKYKLDCRFVLSIHDEV 1026


>gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10]
 gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10]
          Length = 230

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 34/151 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M ++  D ET    P          E   + +  +              Q ++P ++++ 
Sbjct: 1   MREIVFDTETTGLDPNTG---DRVTELGCVEIIDF-IPTGKTFHAYVNPQRSVPKEVVEI 56

Query: 61  -------LRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPS-KRW 93
                  L D+                   VAHN+ F+R        + LG+DI    R+
Sbjct: 57  TGLTTEFLADKPLFDEVGPQFVEFVGDATMVAHNAPFDRGFINMELAR-LGLDIYPDDRF 115

Query: 94  ICTSVLART--NGLPSSLKNACLALNFSEHL 122
             T+ +AR    G   SL   C   + S   
Sbjct: 116 KDTARIARAKFPGSYVSLDALCKRFDISLDT 146


>gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 377

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 22/225 (9%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D     +  P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINNWAP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHV-QAWQLFGEYCKRDVEA-TRELFKRLI 178
              + +G+       +   D+   Y    A H+ + + +       D  A   +    L+
Sbjct: 129 NIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRLSDDKYAWLLDDGAELV 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                E D + + +      +++    +  L+EL A    +    
Sbjct: 189 ANLRREVDPYEVYRDA-KLAWKLSRAQLAVLRELCAWREVQARAR 232


>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 885

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D +++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 375 LNESLTDPSIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHL--- 429

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+  G     ++        P      N+ +    +  Y    +     L++
Sbjct: 430 -------LKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLE--LWE 480

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        +  W   + I 
Sbjct: 481 RGNEQPVQLQVAWQRSRDIC 500


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPQQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          +  D L+++ D     + HN+ F+           K+T    +  
Sbjct: 61  GLSDEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRTEIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 ANTIDTLVMARSMFPGAKYNLDALCKRFKVD 149


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 43/179 (24%), Gaps = 28/179 (15%)

Query: 3   KLFIDIETRSP---QPLPKVGVWAYAEQAVIT-LC-AYAWDDEP--VKLWDRT------- 48
            +  D+ET                      I     ++A    P      D T       
Sbjct: 425 YIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTIDLTGITDDDV 484

Query: 49  -EQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
                +   L ++       + VAHN+ F+        K  G+   +   I T  LAR  
Sbjct: 485 RNAPEVEEVLRRFKEWSQNDILVAHNASFDMGFLNTGYKRYGLGKAANPVIDTLELARFL 544

Query: 104 GL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                   L             +          G  LI    +       Y     +++
Sbjct: 545 LPEMKNHRLNTLAKKFDVELTQHHRAIYDAEATGYLLIKMLKEVMQKGIEYHNQLNDNM 603


>gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
 gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
          Length = 231

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 44/156 (28%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGV-------------WAYA--------EQAVITLCA 34
           M ++ +D ET   +P     + ++G                Y         E   +    
Sbjct: 1   MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPKRSMPKEAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID----I 88
                      D        +D+ Q   D   T   + HN+ F+       LG      +
Sbjct: 61  ----------DDFLRDKPFFADIAQAFVDFVGTDKMIIHNAAFDMKFLNAELGWVNRPLL 110

Query: 89  PSKRWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
           P  + + T  +A  R  G P+SL   C         
Sbjct: 111 PMDQALDTLAIARRRFPGSPASLDALCRRFGIDNSS 146


>gi|229472457|gb|ACQ72743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 60/275 (21%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHSVIKLNQIEAYQLAFVHDE 192


>gi|229472383|gb|ACQ72706.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA        +  F  G    V           D
Sbjct: 11  EFRKLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYGDVLINGDIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           KV    R + K +  A  Y  G +    +          +        +  +     +  
Sbjct: 65  KV-GISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  +++  + + G  
Sbjct: 124 VEAVKCKARQYSYINAIDGRR 144


>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
 gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
          Length = 1029

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 97/351 (27%), Gaps = 34/351 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID+E  S Q               + L   +       + D        S L +   +
Sbjct: 401 LAIDLEHHSMQTFR----------GFVCLIQMSTRTCD-YIIDPFPLFEELSRLNELTTN 449

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ + H S ++ I  ++     +       T   AR    P    +    LN      
Sbjct: 450 PRILKLFHGSDYDIIWLQR--DFSVYVVNMFDTGQAARVLNTPGGY-SLGNLLNLYC-SV 505

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQA--WQLFGEYCKRDVEATRELFKRLIPLS 181
           +  +   L     +              H     + +           +  LF  L    
Sbjct: 506 EANKQYQLSDWRERPLPQHLIEYARSDTHYLPYIYDIMKNQLLLLGNKSHGLFISLKDPF 565

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
                    +  IN     I ++   +L E+   ++ + +   +   +    +       
Sbjct: 566 MDLSVSDNTNLFINQN-KNITIESNSQLLEIGNFDKSETERYSIDKYNLDPSALLTVMHK 624

Query: 242 RMYLFLITGIDLV------------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
              + L   I+                S+  L + ++ + IT L   LIL R   +    
Sbjct: 625 TRLICLKEYIEQPIDIWNISLNIISKFSKNLLHNSINKATITLLVYVLILWRETVARL-- 682

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
              +  +  V  DG L+  +Q    +     +     P  + R   +   L
Sbjct: 683 --YDISNSYVLKDGILQRLIQKQPLNWNDLIATFPNNPAQIKRHSDTLLKL 731


>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 887

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D +++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPSIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHL--- 406

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+  G     ++        P      N+ +    +  Y    +     L++
Sbjct: 407 -------LKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLE--LWE 457

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        +  W   + I 
Sbjct: 458 RGNEQPVQLQVAWQRSRDIC 477


>gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 209

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 34/132 (25%), Gaps = 33/132 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA-----VITL--CAYAWD--DEPVKLW------ 45
           M  LF D ET S +P     +      A             +  D  DE  +        
Sbjct: 1   MKLLFFDTETTSIKPGNICQLSYIVIDASVKPQKTIGKNFFFTVDSMDEGAEAIHGFSLE 60

Query: 46  ---DRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKKTL---------GIDIPS 90
              D +E         + +    D   + + HN  F+    K  L               
Sbjct: 61  KLYDLSEGKEFLDCVHEFMPDFFDADFI-IGHNVQFDIKFLKHELQQLWEAGLIDTTWEP 119

Query: 91  KRWICTSVLART 102
           K   CT   A  
Sbjct: 120 KNTFCTM--AYY 129


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTS-VLARTNGLP 106
            +    L++  +   + +AHN  F+        KK L + +    +I T  +        
Sbjct: 476 TILPKFLKFCENS--ILIAHNISFDMGFLVNQTKKHLNLKLNL-PFIDTLNLARYCLDSN 532

Query: 107 S---SLKNACLALNFS 119
               +LK+       S
Sbjct: 533 LRYFNLKSLAKYFKIS 548


>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           CGA009]
 gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
           palustris CGA009]
          Length = 232

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY--AWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ +D ET    PL    +        I                     +  MP++  
Sbjct: 1   MREIVLDTETTGLDPLRGDRL------VEIGCVEIFNRMPTGRTYHQYLNPERDMPAEAF 54

Query: 59  -------QYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                  ++L D+                   V HN+ F+         +     +P  R
Sbjct: 55  AVHGLSSEFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINAELSRLSRAPVPRDR 114

Query: 93  WICTSVLARTNGLPSS--LKNACLALNFS 119
            + T +LAR      S  L + C      
Sbjct: 115 LVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|302824807|ref|XP_002994043.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
 gi|300138097|gb|EFJ04877.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
          Length = 328

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 44/189 (23%), Gaps = 32/189 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           + +D E      L        A    + +   A+ D  + L D  +            L 
Sbjct: 43  IGLDCE---GVDL--------ARHGRLCIMQLAFQD-AIYLVDAVQGGDALMQACKAALE 90

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNF 118
              V  V H+   +        GI +       T +      L         +       
Sbjct: 91  SPHVTKVVHDCKRDSEALYFQHGIKLN--NVFDTQIAHSLIELQQGRQWIPDDC------ 142

Query: 119 SEHLTKMEEGKAL----IARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATREL 173
                      A     +A   K  + S    D     H     +       DV     +
Sbjct: 143 --ISFVDLLADAKYCVGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRI 200

Query: 174 FKRLIPLSD 182
            + ++   D
Sbjct: 201 HRNMVQRLD 209


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAVITL---------CAYAWDDEPVKL 44
           M+ + ID ET            L  V      EQ    +            +        
Sbjct: 1   MNFIAIDFETANEKRDSACSIGLTVVKNNQIIEQKYYLIKPNELRFAPINISIHGIRASD 60

Query: 45  WDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
               +    +  +LL Y  +   + +AHN+ F+  + +       I  P+ R+ CT +L+
Sbjct: 61  VKNAKTFDQLWPELLPYFTNN--IIMAHNAAFDLSVLRHTLDAYHIPYPNCRYGCTMILS 118

Query: 101 R---TNGLPSSLKNACLALNFS 119
           R    +   + L      L   
Sbjct: 119 RNFFPHLENAKLNTVNHHLGLE 140


>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 882

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 41/185 (22%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           +++ +D+E     T        VG+ +        L   +  ++   +            
Sbjct: 241 NEIAVDLEHHDFRTY-------VGLTS--------LMQISTREKDWIVDTLKPWREQLQV 285

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L +   D +++ V H +  + +  ++ LG+ +       T            +  AC  L
Sbjct: 286 LNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVNG--LFDT-----------GM--ACEVL 330

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           ++ +        K               Y           +    Y + D      ++ +
Sbjct: 331 HYPQKSLAFLLKK------FVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYDK 384

Query: 177 LIPLS 181
           +    
Sbjct: 385 MRNEL 389


>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata]
          Length = 504

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 56/195 (28%), Gaps = 26/195 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E  S +    +            L   +   E   + D     +  + L +  
Sbjct: 312 KEFALDLEHHSYRSFLGLT----------CLMQISTRTED-FIIDTLALRSDMNILNETF 360

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  +    ++  G+ +       T   AR   L   SL +         
Sbjct: 361 TDPAIVKVLHGADSDVEWLQRDFGLYL--VNVFDTHQAARLLNLGRHSLDHL-------- 410

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+  G     ++        P       + +    +  Y   D      L++R    
Sbjct: 411 --LKLYCGVDADKKYQLADWRIRPLPEEMIRYARDDTHYLLY-IYDKVREL-LWERGKEQ 466

Query: 181 SDGERDLWLLDQTIN 195
               + +W   + I 
Sbjct: 467 PTQLQVVWQRSRDIC 481


>gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
 gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
          Length = 374

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 72/259 (27%), Gaps = 36/259 (13%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69
           T S   L    V        + L    +D + + L D  E   +       LRD++V+ V
Sbjct: 21  TYSVVMLDTEFVRTRTLYPKLGLIQM-FDGDNLVLIDPIEIEDLTP-FWDLLRDQSVIKV 78

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNACLALNFSEHLTK 124
            H    +  +F+   G        I T ++A   G        SL      +        
Sbjct: 79  LHACGEDLEVFQHHAG--CLPTPMIDTQLMAAFLGHGVSAGFGSL--VSEYVGVDLEK-- 132

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              G+A      +   D              + L   Y     +   + +       + E
Sbjct: 133 ---GEARTNWLARPLTD----KQLDYAAADVFYLLPLYETLLEKVKAKGWM---DALELE 182

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQ--------ELIAQERKKLDEDIVKLTDGIIRSSR 236
                    +  R   +DLD   +L         + +A  ++     I++     I  + 
Sbjct: 183 -----CTALMQKRTQGVDLDKAYRLVKNAWQLNPKQLAVLQQAAKWRILEARKRDIALNF 237

Query: 237 QTYALRMYLFLITGIDLVD 255
               L ++      I    
Sbjct: 238 VVKELHIWKLAKYNIKSKS 256


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +   GV+       +     TL     D  PV +   T         
Sbjct: 43  VDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKDAPL 102

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +L   L D   + VAHN+ F+  +  +               CT  L++  GLP
Sbjct: 103 FKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGLP 160

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 161 LPNHKLESLAAHFGV 175


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +   GV+       +     TL     D  PV +   T         
Sbjct: 22  VDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKDAPL 81

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +L   L D   + VAHN+ F+  +  +               CT  L++  GLP
Sbjct: 82  FKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGLP 139

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 140 LPNHKLESLAAHFGV 154


>gi|289624730|ref|ZP_06457684.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 517

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 100/327 (30%), Gaps = 63/327 (19%)

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           ER +     +    G  ID   +   +E I  +     +      D  +        +  
Sbjct: 155 ERPVADYLISSAAAGIAIDTTRLRIHKENIEFDYYMALKQFSAKYDVPLELP-SNDDIIR 213

Query: 244 YL----FLITGIDLVDMSEGTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEA 298
            L    +   G+         ++ +L+   +    A DL+  R  +   ++L    L   
Sbjct: 214 RLEPMGYDFLGV--------DVEYVLNFVPMNDNFAIDLLRLRKIAKSRSVLNAIPL--- 262

Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
             S  R+   +  +G S T R        QNL +                          
Sbjct: 263 --SQKRIYPIVDCFG-SITSRIYFKDPSLQNLAKHH------------------------ 295

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 R  ++   G+     D    EA ++A ++G++  ++ +A+G+            
Sbjct: 296 ------RDILVPDEGRAFSYVDYEQYEAGIMAALSGDEKLLELYADGDLYKQVANDIFEG 349

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
                  + +R   K + L+  Y    +     A   G D         + + F+ + + 
Sbjct: 350 -------EGRRKEAKRLFLSYAYGMKNRHLIDAAFGYGAD------RRATKTFFKQFGKF 396

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACEL 505
           E   + + D + +      ++G   + 
Sbjct: 397 EEWKISVHDSFGKDQRIGTVLGNYLKR 423


>gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 377

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 74/294 (25%), Gaps = 39/294 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 NIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFAILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++  + +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAIL 290
                  +   +   L       L ++        +  +      L    +A  
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 244

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET    P                  L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + +   +  +++D     + HN+ F+      +   +D+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFVKDAE--LIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 207

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 25/136 (18%)

Query: 6   IDIETRSPQPLP-----KVGVWAYAEQAVI-----TLCAY--AWDDEPVKLW------DR 47
           +D ET    P       ++G+   A    +     TL     +     V           
Sbjct: 9   VDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVDRSVGASWVHHITARELLHA 68

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVLART 102
            +   +  +L   L     + VAHN  F+              I +     +CT  L+R+
Sbjct: 69  PDFEGIAHELRDLLA--GRVFVAHNVSFDSRFLLAEYSRMGASIPVDQSTMLCTMKLSRS 126

Query: 103 NGLPSSLKNACLALNF 118
                 L + C     
Sbjct: 127 LIGRGKLADCCEYFGI 142


>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
 gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
          Length = 389

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 34/266 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D    +   +     + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQIAAPDGSTALVDPLAPAIDLTPFFALMG 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H++  +  +    L   +  + +  T V A   G   S              
Sbjct: 72  DERVLKVFHSARQDLEII--WLQGGLLPQPFFDTQVAAMVCGYGDS------------VS 117

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +        A+  K S  +       +           Y   DV    ++++ L     
Sbjct: 118 YEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQL------SYALSDVTHLIKVYEALARQLL 171

Query: 183 GERDLWLLDQTI----NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                  LD+ +    +   YR D D   +      ++ +++   +         +  + 
Sbjct: 172 ATDRGAWLDEEMAVLTSPETYRADPDQAWRRLAGRMRKAREIAILMEVAAWREREAQSRN 231

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSI 264
                 L     +D+   +  +++++
Sbjct: 232 VPRGRILKDEAVLDVATAAPRSVEAL 257


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 30/148 (20%)

Query: 1   MSK--LFIDIETRSPQ----PLPKVGVWAYAEQ-------AVITLC-----AYA-----W 37
           M    + ID ET   +     + ++GV A  EQ       + + L      AYA      
Sbjct: 20  MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIVKTWESKLRLIDGEVSAYAMQVNRL 79

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRW 93
           D   ++        A+   L +      V+  AHN  F+         +  G+      +
Sbjct: 80  DPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARH-GLPQWQGNF 138

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
           + +  L R     L +SL++        
Sbjct: 139 VDSMALGRALLPDLSASLESLARHFRVE 166


>gi|229472229|gb|ACQ72629.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472329|gb|ACQ72679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA        +  F  G    V           D
Sbjct: 11  EFRKLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYGDVLINGDIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G +    +          +        +  +     +  
Sbjct: 65  KI-GISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  +++  + + G  
Sbjct: 124 VEAVKCKARQYSYINAIDGRR 144


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 75/290 (25%), Gaps = 56/290 (19%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D  E       +L    +  E  + VAHN+ F+    K   K LGI    +  I T  L+
Sbjct: 507 DMLEGKNTIDQVLPDFLNFIENCILVAHNATFDITFLKEKIKELGIAYKPQPVIDTMTLS 566

Query: 101 RTNGLP----SSLKNACLALNFSEHL---------------TKMEEGKALIARFCKGSID 141
           +          SLK                            KM      ++   K   +
Sbjct: 567 QRFFSEFLKYFSLKRLATVFKVKMEEHHRALSDANTTAQVFIKMI---DQLSDASKNDKN 623

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               +          +    Y    + A ++ ++ L  L                +  R+
Sbjct: 624 VLITNFFDLKDPIDPKYERSYHINILVANQKGYRNLFELLSA------ALTDGFYKKPRV 677

Query: 202 DLDLVLKLQE----------------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
               + K +E                 +    +KL + I       I+  +    L   L
Sbjct: 678 LKSSLSKHREGLLVGSGCYDSNIFEIALNSNIEKLRKAISFYDYIEIQPPQAYKHLISQL 737

Query: 246 FLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSA 288
                  +          ++   K I++  ++  +       R     + 
Sbjct: 738 GDKGEKIIHSTLIKIIEETKKQNKIIIATGDVHYIHPWEKDYRQIYIKAK 787


>gi|229472351|gb|ACQ72690.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472367|gb|ACQ72698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472447|gb|ACQ72738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 60/275 (21%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
 gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
          Length = 210

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 25/136 (18%)

Query: 6   IDIETRSPQPLP-----KVGVWAYAEQAVI-----TLCAY--AWDDEPVKLW---DRTEQ 50
           +D ET    P       ++G+   A    +     TL     +     V      D    
Sbjct: 8   VDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVDRSVGASWVHHITARDLLHA 67

Query: 51  ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-----GIDIPSKRWICTSVLART 102
                +  +L   L     + VAHN  F+              I +     +CT  L+R+
Sbjct: 68  PDFEGIAHELRDLLA--GRVFVAHNVSFDSRFLLAEYSRMGASIPVHQSTMLCTMKLSRS 125

Query: 103 NGLPSSLKNACLALNF 118
                 L + C     
Sbjct: 126 LIGRGKLSDCCDYFGI 141


>gi|229472251|gb|ACQ72640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA        +  F  G    V           D
Sbjct: 11  EFRKLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYGDVLINGDIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G +    +          +        +  +     +  
Sbjct: 65  KI-GISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  +++  + + G  
Sbjct: 124 VEAVKCKARQYSYINAIDGRR 144


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 56/191 (29%), Gaps = 16/191 (8%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--- 105
               +  +LL +L D  +  + HN  FER        I         +  L+        
Sbjct: 75  HLEDIKKELLVFLED--LPLICHNGGFERKFLSYH--IPEIKNEIFDSMELSAILEPWRK 130

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             +L +   ++     L K E  + L        + +              +    Y   
Sbjct: 131 EYNLDSLIKSI---TILDKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNII 187

Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
           D +     ++ L      E  L  +   I D  Y +  +   +    + +   + ++   
Sbjct: 188 DKD-----YEFLKYWEWKEYLLKPILFNIEDYPY-VSYEENKRQDVKLKRIPIEYEKYED 241

Query: 226 KLTDGIIRSSR 236
            L +  I ++ 
Sbjct: 242 LLINEEIWNNG 252


>gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 392

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E        +  +  Y     ++L   ++  E   + D        S + + +
Sbjct: 22  KFIAVDTE------FIRNNLIYY---PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKIM 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ +  V H+   +                   T V A                     
Sbjct: 72  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFC-----------HYYHDFI 118

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    IA     + +S       +           Y   DV    +L++ L   
Sbjct: 119 GYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCNK 172

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 173 LEENNRMGWFQEEME 187


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQ----PLPKVG----VWAYAEQAVITLC----AYAWDDEPVKLWDRT 48
           M ++  D ET         + ++G    +  Y       +          DE V +   T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60

Query: 49  EQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICT 96
            +        S +  +LL+++       VAHN+ F+       LG      I     + T
Sbjct: 61  NERLKNEKSFSDIADELLEFI--SGATMVAHNASFDIGFLNAELGRVNKPLISVDNILDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             +AR      P+SL   C      
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGID 143


>gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
          Length = 230

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 44/153 (28%)

Query: 1   MSKLFIDIETRS-----------------PQPLPKVGVWA---------YAEQAVITLCA 34
           M ++ +D ET                      +P    +            E   +    
Sbjct: 1   MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQRAMPREAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI----DI 88
              D+             + + + +   D       V HN+ F+       LG      +
Sbjct: 61  ---DE-------FLADKPVFARIGRAFLDFVGDARLVIHNASFDMKFLNAELGWANLPRL 110

Query: 89  PSKRWICT--SVLARTNGLPSSLKNACLALNFS 119
           P  + + T     ++  G P SL   C      
Sbjct: 111 PDSQALDTVAMARSKFPGSPVSLDALCRRFGID 143


>gi|229472477|gb|ACQ72753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R    AS G+++V ADL+G+E R LA        +  +  G    V        
Sbjct: 7   PSDPEFRKLFRASPGQRMVGADLSGVELRCLAHY------LARYDEGRYREVLLNDDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     + +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDQKI---GLSYDKSLSPNKAKAKGKEIRQAYIDA 116

Query: 479 ESHHLWM---QDQYPEFAVKDKLIGTA 502
                 +     Q  E      +    
Sbjct: 117 IDGLDKLLKDIKQASERGYVRAIDKRK 143


>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 50/183 (27%), Gaps = 47/183 (25%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDE 64
           +D+ET          V   A +  + + A A DD  PV                + L   
Sbjct: 780 LDVETT-LFDRALCLVQLAAPEYTVVIDARAVDDLGPVS---------------ELLASR 823

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNA-CLALNF 118
            V+ + HN+ FER +F+K   + +  +    T  ++R            L       L  
Sbjct: 824 AVVKIIHNAQFERSVFRK---LGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                +                       +        Q   +Y   D E    L +R  
Sbjct: 881 ELDKHE---------------------QRSDWTLRPLTQRQLDYAALDAEVLLVLHERFT 919

Query: 179 PLS 181
              
Sbjct: 920 REL 922


>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
 gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
          Length = 377

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 39/291 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +  +A +       D +   L D     +  P  L   L
Sbjct: 26  FVAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LADLL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+ V H    +  +  +  G     +    T + A    L  S+      L     
Sbjct: 73  EDSAVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 GIELPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFTVLRPRL 172

Query: 182 DGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             ++  W+L+            ++ + + +  +L  +   +    + +L     R +R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNR 232

Query: 239 YALR-MYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGS 287
              R   L   +   +       L ++        +  +      +     
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQDGEFLIQLIKR 283


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWAYAEQAVITLCAYAWDDEPVK 43
           M ++ +D ET    P                 LP    + +             + + ++
Sbjct: 1   MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPERL-----IEPDAIR 55

Query: 44  LWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRW 93
           +   T+         +DL Q   D       +AHN+ F+R       ++         RW
Sbjct: 56  VHGITDEMVADKPKFADLAQAFIDFVGDAPIIAHNASFDRGFINMELERLGLDPTDPDRW 115

Query: 94  ICTSVLART--NGLPSSLKNACLALNFS 119
           + T  LAR    G+ +SL   C   N S
Sbjct: 116 VDTLELARYKFPGMANSLDALCKRYNIS 143


>gi|229472471|gb|ACQ72750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA        +  F  G    V           D
Sbjct: 11  EFRKLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYGDVLINGDIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G +    +          +        +  +     +  
Sbjct: 65  KI-GISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  +++  + + G  
Sbjct: 124 VEAVKCKARQYSYINAIDGRR 144


>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|256044440|ref|ZP_05447344.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113284|ref|ZP_05454152.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
 gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
          Length = 385

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DE ++ V H +  +  +    LG +
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDIEIVF-HLG-N 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDTQVAAMVCGFG------------DAISYDQLVQKVTGKHLDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L      E     +++ I
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEI 182


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 28/146 (19%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAE-------QAVITLCAYAWDD--EPVKLW- 45
           M ++  D ET    P     +   GV  +          A I       D     V    
Sbjct: 1   MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60

Query: 46  -DRTEQSA----MPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
            D          +  + L++        +AHN+ F+        K+     I     I T
Sbjct: 61  DDFLADKPLFSEIADEFLEFF--SGAKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFSE 120
             +AR      P++L   C   +   
Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDT 144


>gi|229472225|gb|ACQ72627.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472385|gb|ACQ72707.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA        +  F  G    V           D
Sbjct: 11  EFRKLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYGDVLINGDIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G +    +          +        +  +     +  
Sbjct: 65  KI-GISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  +++  + + G  
Sbjct: 124 VEAVKCKARQYSYINAIDGRR 144


>gi|229472215|gb|ACQ72622.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 232

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY--AWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ +D ET    PL    +        I                     +  MP++  
Sbjct: 1   MREIVLDTETTGLDPLRGDRL------VEIGCVEIFNRMPTGRTYHQYLNPERDMPAEAF 54

Query: 59  -------QYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                  ++L D+                   V HN+ F+         +     +P  R
Sbjct: 55  AVHGLSSEFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINAELSRLSRAPVPRDR 114

Query: 93  WICTSVLARTNGLPSS--LKNACLALNFS 119
            + T +LAR      S  L + C      
Sbjct: 115 LVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPRQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFDAYRIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          +  D L+++ D     + HN+ F+           K+     +  
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRAEIKLLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR+   G   +L   C      
Sbjct: 119 SNAIDTLVMARSMFPGSKYNLDALCKRFKVD 149


>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 244

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET    P                  L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + +   +  +++D     + HN+ F+      +   +D+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFVKDAE--LIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 40/146 (27%), Gaps = 29/146 (19%)

Query: 2   SKLFIDIETR----SPQPLPKVGVWAYAEQAVITL-CAYAWDDEPVK------------- 43
           S + +D+ET     S   + +VG         +    A   +                  
Sbjct: 25  SFVVLDLETTGTSASGSRITEVGAVRVRG-GEVVGEFATLVNPGTPIPANITLLTGITQS 83

Query: 44  -LWDRTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSV 98
            +        +   LL +L  +   + VAHN+ F+    K      G D P    + T  
Sbjct: 84  MVASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLR 143

Query: 99  LARTNGLP-----SSLKNACLALNFS 119
           LAR            L          
Sbjct: 144 LARAVLARGETRNHRLATLAAYFGVP 169


>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
 gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
          Length = 392

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E        +  +  Y     ++L   ++  E   + D        S + + +
Sbjct: 22  KFIAVDTE------FIRNNLIYY---PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKIM 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ +  V H+   +                   T V A                     
Sbjct: 72  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFC-----------HYYHDFI 118

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    IA     + +S       +           Y   DV    +L++ L   
Sbjct: 119 GYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCNK 172

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 173 LEENNRMGWFQEEME 187


>gi|289620962|emb|CBI52696.1| unnamed protein product [Sordaria macrospora]
          Length = 821

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 31/180 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y     ++L   +  ++   +            L +  
Sbjct: 248 KEIALDLE--------HHDFRSYTGL--LSLMQISTREKDWVIDTLQPWRHKLEVLNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++ V H +  + I  ++ LG+ +       T       G P        +L +   
Sbjct: 298 ADPKIVKVLHGAFMDAIWLQRDLGLYL--VGLFDTYHACAVLGYP------GRSLGY--- 346

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L+++F +   D               ++F  Y + D      ++  L+   
Sbjct: 347 ---------LLSKFAEFEADKKYQLADWRIRPLPEEMFY-YARSDTHYLLYIYDMLVNEL 396


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           E  + VAHN+ F+    ++ +   G      + + T +L+        P SL      L 
Sbjct: 531 EDTVLVAHNAPFDMGFLRRAVPETGAHFD-NQVLDTVLLSAMLWGQSAPHSLDALTERLG 589

Query: 118 F 118
            
Sbjct: 590 I 590


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 47  RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
             +       + ++    +  + VAHN+ F+     KT    G+ +P +  I T  L+R 
Sbjct: 479 LADAPPEAEVMARFAEFSKDTILVAHNASFDMGFLNKTYARLGMPVPDQPVIDTLELSRL 538

Query: 103 NGL---PSSLKNACLALNFS 119
                    L         +
Sbjct: 539 VNPDMRSHRLNVLAKHYGVT 558


>gi|154299492|ref|XP_001550165.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
 gi|150857350|gb|EDN32542.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
          Length = 1122

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 67/560 (11%), Positives = 122/560 (21%), Gaps = 114/560 (20%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L++S    KM +GK              P                 Y K     
Sbjct: 452 DPWLKQLDWSIQEIKMVKGKTKNDPPRPAKRQKMPGMPQWYKD--------LYPKVSGPI 503

Query: 170 TRELFKRLIPLS-DGERDLWLLDQTINDRGY--RIDLDLVLKLQELIAQERKKLDEDIVK 226
              +  R+ PL      D +         G+  R+ ++     ++          + + +
Sbjct: 504 NLSVRTRIAPLLLRMAWDGYP-LVWSEKYGWTFRVPIEEAHNYKQ----------KQMQE 552

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                              F I   D            L+       AK  +        
Sbjct: 553 CNAFEEADMALRDDTSAAYFKIPHKDGP----------LAKCGSPM-AKSYVQYFDKGIL 601

Query: 287 SAILKL--NTLS-EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN--------LPRQER 335
           S+        L   A  S             +   +                  LP+   
Sbjct: 602 SSEYSYAKEALEMNASCSYWISARNRIQSQMTVYEKDGAKGPTTSQSKLETGYILPQIIP 661

Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395
              +  + ++      + A P       ++S I A  G   V AD+   E  + + + G+
Sbjct: 662 MGTVTRRAVENTWLTASNAKP-NRVGSELKSMIKAPPGYCFVGADVDSEELWIAS-LVGD 719

Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTM 451
                   N          KA  T +   +       R   KV      Y  G K   T+
Sbjct: 720 AQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAGILGITRNDAKVFNYGRIYGAGLKFASTL 779

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511
                  L +   +  + + ++  +  +                              WR
Sbjct: 780 LRQFNPSLTEAETSHTAGNLYKATKGVK-------------------TSRKILYPGPFWR 820

Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571
               G      +  E FA   +    +    +              +             
Sbjct: 821 G---GTESFVFNKLEEFAEQEKPRTPVLGAGITEALMACFVSKGGFMTSR---------- 867

Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KNATKNGYDIV 625
                                         +Q+   D   +L   M            + 
Sbjct: 868 --------------------------INWAIQSSGVDYLHLLIISMDYIIRLYNINARLA 901

Query: 626 LTVHDEIVSETPDTPYFSVG 645
           +TVHDEI     D   +   
Sbjct: 902 ITVHDEIRYLVKDEDRYRAA 921


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 40/153 (26%)

Query: 2   SKLFIDIETRSPQP-----LPKVGV---------------------WAYAEQAVITLCAY 35
            ++ +D ET    P     L ++G                         AE   +   + 
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDPLRDMPAEAQKVHGLSI 62

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
            +     K         +    L+++ D     +AHN+ F+R       +K     +P  
Sbjct: 63  EFLTGKPKFH------EIADAFLEFVGDS--PVIAHNAAFDRSFVNFELEKCNRGPLPES 114

Query: 92  RWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
           RW+ T  +A  R  G+ +SL   C     S   
Sbjct: 115 RWVDTLAMAKKRFPGMYNSLDALCKRFKISLDS 147


>gi|82753293|ref|XP_727619.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483550|gb|EAA19184.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 410

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 48/186 (25%), Gaps = 27/186 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDL 57
           +  + +DIE            +       +++      D  + ++D             L
Sbjct: 70  LKIIGLDIE-----------GYKIGRNGTVSIIQICAKD--IYIFDLYKCDNSYLFAKYL 116

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            +   ++ ++ V H+   +  +      I++       T + A    L  S K       
Sbjct: 117 KELFENKNIIKVTHDCREDCSILFNQYNINLN--NIFDTQI-AYNLILKKSKKELY---- 169

Query: 118 FSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +        K   L              D          +    Y  +DV   + L  
Sbjct: 170 --QISYDDLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLML 227

Query: 176 RLIPLS 181
            L+   
Sbjct: 228 NLVETL 233


>gi|229472459|gb|ACQ72744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 37/144 (25%), Gaps = 13/144 (9%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRKLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G              L +     K     + +  A    
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSEQQAKKKGKEIRQAYMDAVPGL 120

Query: 483 LW---MQDQYPEFAVKDKLIGTAC 503
                      E    +   G  C
Sbjct: 121 EKLVTAVKSKAESGFINLCDGRRC 144


>gi|229472359|gb|ACQ72694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 37/144 (25%), Gaps = 13/144 (9%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRKLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G              L +     K     + +  A    
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSEQQAKKKGKEIRQAYMDAVPGL 120

Query: 483 LW---MQDQYPEFAVKDKLIGTAC 503
                      E    +   G  C
Sbjct: 121 EKLVTAVKSKAESGFINLCDGRRC 144


>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1016

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQY 60
            ++ +D+E           + +YA      L   +  +    +     +  +        
Sbjct: 329 KEIAVDLE--------HHDMRSYA--GFTCLIQISTRESDWVVDTLALRKEIQQDKFGDV 378

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
             D T++ V H +  + I  ++    +I       T        +P  SL       
Sbjct: 379 FTDPTIVKVFHGADSDIIWLQR--DFEIFVVNLFDTYSACVVLEMPQRSLSALLQHY 433


>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1016

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQY 60
            ++ +D+E           + +YA      L   +  +    +     +  +        
Sbjct: 329 KEIAVDLE--------HHDMRSYA--GFTCLIQISTRESDWVVDTLALRKEIQQDKFGDV 378

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
             D T++ V H +  + I  ++    +I       T        +P  SL       
Sbjct: 379 FTDPTIVKVFHGADSDIIWLQR--DFEIFVVNLFDTYSACVVLEMPQRSLSALLQHY 433


>gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 235

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 61/240 (25%), Gaps = 29/240 (12%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  V+ V H    +  +  +  G          T + A    L  S+       
Sbjct: 9   LSALLENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSM------- 59

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELF 174
                               +      P   TR++ ++    +    Y   D     ELF
Sbjct: 60  -------------GYSRLVQEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAELF 106

Query: 175 KRLIPLSDGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDG 230
             L P    ++  WLLD       +    +D  ++    +      R +L          
Sbjct: 107 TILRPRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWR 166

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
              +  +       +   +   L       L ++        +  +      L    +A 
Sbjct: 167 EREARARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 226


>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
          Length = 892

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   + D++   + D          L +   +  ++ V H S ++    ++  GI +   
Sbjct: 311 LMQISTDEKD-YIIDPFPIWNDMQILNEPFTNPNILKVFHGSEYDVQWLQRDFGIYV--V 367

Query: 92  RWICTSVLARTNGL-PSSLKNA 112
               T            SL + 
Sbjct: 368 GMFDTFCAMHVLNFAKYSLAHL 389


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 37/154 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 15  LREIILDTETTGLDPRQG---HRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRMH 71

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          +  D L+++ D     + HN+ F+           K+     +  
Sbjct: 72  GISGEFLKDKPLFHTIADDFLEFIADS--KLIIHNAPFDIKFLNHELSLLKRAEIKLLEL 129

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
              I T V+AR+   G   +L   C         
Sbjct: 130 ANTIDTLVMARSMFPGSKYNLDALCKRFKVDNSS 163


>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
          Length = 235

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 41/147 (27%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------AYAWDDEPVKL 44
           M ++  D ET               E   I +                      DE V +
Sbjct: 1   MREIIFDTETTGLN----KESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAI 56

Query: 45  WDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
              T           D++  L D  +    VAHN+ F+        ++     I S   I
Sbjct: 57  HGLTNERLKDEKKFDDIVDALLDFIDGATIVAHNANFDIGFLNAELERVNKPLINSDNVI 116

Query: 95  CTSVLARTNGL--PSSLKNACLALNFS 119
            T  +AR      P+SL   C      
Sbjct: 117 DTLSIARRRFPMGPNSLDVLCKRFGID 143


>gi|229472247|gb|ACQ72638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA        +  F  G    V           D
Sbjct: 11  EFRKLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYGDVLINGDIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G +    +          +        +  +     +  
Sbjct: 65  KI-GISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  +++  + + G  
Sbjct: 124 VEAVKRKARQYSYINAIDGRR 144


>gi|158292666|ref|XP_314043.4| AGAP005155-PA [Anopheles gambiae str. PEST]
 gi|157017099|gb|EAA09562.4| AGAP005155-PA [Anopheles gambiae str. PEST]
          Length = 1064

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 51/203 (25%), Gaps = 34/203 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             IT+           ++D      M  +  L + L  E V+ V H+   + +       
Sbjct: 572 GQITMVQLGTTRGEAFIFDIATCPDMVVEGGLKEILESEKVIKVIHDCRNDSVNLFNQFQ 631

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL   C   N + +  K          
Sbjct: 632 ILLR--NVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEMYNATVNPMKD--------- 680

Query: 135 FCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDV--EATRELFKRLIPLSDGERDLW--- 188
                + +      +    +        Y   DV      +L+  +      E       
Sbjct: 681 ----QLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIRPEYRELLSE 736

Query: 189 LLDQTINDRGYRIDLDLVLKLQE 211
           L  + I      +D+ +  K ++
Sbjct: 737 LCTEQILMLIRPVDVKMRKKQRK 759


>gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421]
          Length = 195

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 28/190 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQSAMPSDLLQ 59
             L +D ET                +  ++L    WD   E V + D      + + + +
Sbjct: 28  KVLAVDTET-------AHWHQVSTGKNRVSLLQV-WDGTSEAVSVIDCFAVD-LTAFVEK 78

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            +R+  ++ + HN+ ++       LG    ++  +CT  +AR+   P+S + A       
Sbjct: 79  TMRNWEIVKLIHNAPYDLA----YLGGAAQARSVVCTLQMARSI--PTSRRGALER---- 128

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                    KAL A F    +D        A      +   +Y   D   T  +++ +  
Sbjct: 129 ------NSLKALSAHFLGIELDKRYQASNWALRPLTAEQL-DYAALDPWVTFHIWEHMRA 181

Query: 180 LSDGERDLWL 189
           L + E + + 
Sbjct: 182 LVEPENEGFE 191


>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
          Length = 834

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D +++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPSIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHL--- 406

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+  G     ++        P      N+ +    +  Y    +     L++
Sbjct: 407 -------LKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLE--LWE 457

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        +  W   + I 
Sbjct: 458 RGNEQPVQLQVAWQRSRDIC 477


>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278]
 gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Bradyrhizobium sp. ORS278]
          Length = 232

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     L         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDALRG---DRLVEIGCVEIINRMPTGQVFHRYINPQRDMPAEAFAVH 57

Query: 39  DEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
               +            +  D L ++ D     V HN+ F+         +     IP +
Sbjct: 58  GLSTEFLSDKPLFH--EVVEDFLAFIGDA--PLVIHNASFDIGFINAELDRVKRAAIPRE 113

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
           R + T +LAR      S  L + C      
Sbjct: 114 RLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
 gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
          Length = 383

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 66/250 (26%), Gaps = 29/250 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A   E   + D    +   +  L+ L D +V+ V H +  +  +F K +G  
Sbjct: 37  PKLCLIQVA-STEEAAIIDPLAAALDLAPFLELLADPSVLKVFHAARQDLEIFYKLMGKV 95

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T + A   G                     + G   + R   G+        
Sbjct: 96  --PAPLFDTQIAAMACGHG------------------DQVGYEALIREVTGAQVDKGSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI------ 201
           T             Y   DV    + ++ LI   + +  L  +   +             
Sbjct: 136 TDWAKRPLSDKQLTYALGDVTHLVDAYQALITELEEKGRLEWIHAEMTQLNDPTLYYTDP 195

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261
           D          + Q  + L + +    +    +          +     +++V       
Sbjct: 196 DEAWRRIKVRNLKQRDRALLKAVAAWREREAIARDTPR--NRVMKDDGLMEIVRTKPKDA 253

Query: 262 KSILSHSNIT 271
           + + +   I 
Sbjct: 254 QELAALRAIP 263


>gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
          Length = 377

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 39/291 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +  +A +       D +   L D     +  P  L   L
Sbjct: 26  FVAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LADLL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+ V H    +  +  +  G     +    T + A    L  S+      L     
Sbjct: 73  EDSGVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 GIELPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFSVLRPRL 172

Query: 182 DGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             ++  W+L+            ++ + + +  +L  +   +    + +L     R +R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNR 232

Query: 239 YALR-MYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGS 287
              R   L   +   +       L ++        +  +      +     
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQDGEFLIQLIKR 283


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL-- 105
             +      +  D   + V HN+ F+       +K  G+    +  + T +L+       
Sbjct: 608 DTVLPQFQTFCAD--TVLVGHNAAFDMRFLQLKEKQTGVRFD-QPVLDTLLLSAVLHPNQ 664

Query: 106 -PSSLKNACLALNFS 119
               L+     L  S
Sbjct: 665 NSHRLEAIAERLGVS 679


>gi|229472253|gb|ACQ72641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 60/275 (21%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|296226151|ref|XP_002758779.1| PREDICTED: DNA polymerase theta-like [Callithrix jacchus]
          Length = 66

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665
           +L +HDE++ E  +     V  +    M      +  L LK 
Sbjct: 11  ILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKLKV 52


>gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 385

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 53/201 (26%), Gaps = 43/201 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMP 54
            + ID E     T                   + L   A    DD    L D        
Sbjct: 22  YVTIDTEFLRERTYYS---------------KLCLIQMAMPGTDDSGAVLVDPLAGDMSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F   +   +  +    T V A   G          
Sbjct: 67  EPLYALFRDTSVVKVFHAARQDLEIF--FVDAGVFPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ +    ++D        +           Y   DV   R+++
Sbjct: 118 QVGYET----------LVRKIAHQAVDKTSRFTDWSRRPLTDAQAK-YALADVTHLRQVY 166

Query: 175 KRLIPLSDGERDLWLLDQTIN 195
           + L    +       + + + 
Sbjct: 167 EFLARKLEETGRARWVAEELE 187


>gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020]
          Length = 377

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 74/294 (25%), Gaps = 39/294 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQNAWLIDPLLINDWQP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 NIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFAILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++  + +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAIL 290
                  +   +   L       L ++        +  +      L    +A  
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
          Length = 834

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 45/181 (24%), Gaps = 34/181 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S +    +            L   +       + D  E       L +   +
Sbjct: 255 IAVDLEAHSYRSFQGLT----------CLMQISTSSSD-YIIDTLELWDQLQPLNEVFCN 303

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             ++ + H +  +    ++  GI +       T   A+  G    SL             
Sbjct: 304 PKIVKIFHGADMDIQWLQRDFGIYV--VNLFDTYHAAKLLGFAQLSLSFLLRHY------ 355

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                        C+   D               +    Y + D      +++++     
Sbjct: 356 -------------CQVIADKQYQLADWRIRPLP-EQMVNYAREDTHYLGYIYEKMKKDLK 401

Query: 183 G 183
            
Sbjct: 402 M 402


>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
           siraeum V10Sc8a]
          Length = 268

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 38/144 (26%), Gaps = 41/144 (28%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDLL---- 58
           IDIET    P          +  +I L A   ++  V             +P  ++    
Sbjct: 108 IDIETTGLNP----------DDEIIELGAVTVENGSVAETYSVLVKTDKKIPEAIIRLTG 157

Query: 59  ---QYLRDETVMC----------------VAHNSLFERILFKKT---LGIDIPSKRWICT 96
              + L  E                    V HN  F+    K       ID    + I T
Sbjct: 158 ITEELLASEGTDKSKALSEFAMRCNGKPLVGHNIGFDLNFIKSACAENKIDFVPSKIIDT 217

Query: 97  SVLAR-TNG-LPSSLKNACLALNF 118
             ++R        SL       + 
Sbjct: 218 VKISRKLLDINSYSLAAIADYFDL 241


>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
          Length = 935

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 40/173 (23%), Gaps = 22/173 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
               +D E  S +                 L   +  +E   L D          L    
Sbjct: 133 RVFAVDTEQHSLRSFLGFTA----------LIQISTQNED-YLVDTIALHDTLDVLQPVF 181

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + ++  V H +  + +  ++     I       T+        P   K+    L     
Sbjct: 182 ANPSICKVFHGADNDVLWLQR--DFHIYVVNLFDTAKACEVLSKPQ--KSLAYLL----- 232

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +   G A      +      P       + Q    +  Y    + A     
Sbjct: 233 --ETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQH 283


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 20/138 (14%)

Query: 1   MSKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT----- 48
           ++ + +D+ET         + ++G+    +   I   +     +   PVK+   T     
Sbjct: 2   LNFVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDH 61

Query: 49  --EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
             + +    ++L  +      +  V HN  F+       +   +       T  L++   
Sbjct: 62  ELQDAPKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLA-NPLYDTLELSKYLM 120

Query: 105 LPSS---LKNACLALNFS 119
             +S   L   C  L   
Sbjct: 121 PGASNHRLGYLCSYLGID 138


>gi|262212409|gb|ACY35821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRRLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQTKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCGGRRC 144


>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
 gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
          Length = 385

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    +        +       + DET++ V H +  +  +    LG D
Sbjct: 37  PELCLIQMASPDHTALVDALAPGLDLAPFFR-LMADETIVKVFHAARQDIEIVF-HLG-D 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       + V A   G                        K    +  K S  +     
Sbjct: 94  LIPSPVFDSQVAAMVCGFG------------DAISYDQLVQKVTGKQIDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L    + E     +++ +
Sbjct: 142 PLSDKQLD------YALADVTYLRDIYLYLKEELEKEGRSEWVNEEM 182


>gi|262342295|gb|ACY54658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
 gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
          Length = 855

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 38/241 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     V H +  + +  ++  GI I       T   +R   L   SL+     
Sbjct: 297 LREVFKDPAKRKVMHGADRDIVWLQRDFGIYI--CNLFDTGQASRVLKLERNSLEYL--- 351

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+                 FC  +      +          +    Y + D      ++ 
Sbjct: 352 LHH----------------FCGVTAKKEYQNAEWRLRPLPDE-MIRYAREDTHYLLHIYD 394

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE-LIAQERKKLDEDIVKLTDGIIRS 234
            +  L   +          ND G    +++  +  +  +    K+L  +   L    + +
Sbjct: 395 LMRALLLTKHSD-------NDNGDPPLVEVYKRSYDVCMQLYEKELFTENSYLNMYGLPN 447

Query: 235 SRQTYALRMYLFLITGI-------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
           +         +  +          +            L             L RL  S  
Sbjct: 448 AGFNAQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTPSKLRRLLKSKH 507

Query: 288 A 288
           +
Sbjct: 508 S 508


>gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
 gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
          Length = 385

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 102/362 (28%), Gaps = 24/362 (6%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69
           T+S   L    V        + L    +  + V L D T      S  +  L DE+V+ V
Sbjct: 32  TQSAVALDTEFVRVRTLHPKLGLIQL-YAGDEVALIDPTMIQDF-SPFIALLADESVLKV 89

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEE 127
            H    +  +F+         +    T V+A   G    +                ++++
Sbjct: 90  LHACGEDLEVFQHYFQQ--LPQPMCDTQVMANFLGFAGSAGFATLVQHYFH----IEIDK 143

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           G +      +   +              W L   Y +   +  +  ++  +         
Sbjct: 144 GASRTDWLARPLSEIQLR----YAAADVWYLLPLYVQMQTQLAQTEWQSAVKNECEFLLH 199

Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
                  N       +    KL  L     K L +  ++       +          L+ 
Sbjct: 200 KRAHAVKNPDTAYFAIPNAWKLNRLELMRLKLLAKWRMEEAMKRDLALNFV-VRAENLWQ 258

Query: 248 ITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306
           +   +  +    TL  + LS + +    K L+         +        + ++ D R  
Sbjct: 259 VAKYNPKNT--STLLELGLSTAEVRIHGKKLLQIIDQVKRISEEDYPPPIQRLADDSR-- 314

Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
               +  A +  +       P NLP++  + +   +++   +  +   D         R 
Sbjct: 315 ----YKAALKALQQQLIQIAPANLPKEVIASKRHLESLMKWHWRKETEDEPPELLSGWRK 370

Query: 367 CI 368
             
Sbjct: 371 PF 372


>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
 gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
          Length = 399

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 60/251 (23%), Gaps = 51/251 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E           +      A + L     D+  V +         P  L   + D
Sbjct: 24  VAIDTE----------FLRERCYWAKLCLIQLGTDERSVVVDPLKVHDLSP--LRDLMVD 71

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            +V+ V H +  +  +    L  D+       T V A   G                   
Sbjct: 72  TSVVKVFHAATQDLDILFHEL--DVMPDPIFDTQVAAALLGQTV---------------- 113

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL------FGEYCKRDVEATRELFKRL 177
                   +       ++       +A+    W           Y   DV     ++++L
Sbjct: 114 -------QVGYGTL-VLNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQL 165

Query: 178 IPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
               +        E D   L      R    +    LK    ++  +    + +    + 
Sbjct: 166 TERLEALGRASWLEHDFAELVDPSRYRVDPENRWRHLKNVNQLSGRQLACAKHVAAWRER 225

Query: 231 IIRSSRQTYAL 241
                      
Sbjct: 226 KAMERNIPRKA 236


>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
 gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
          Length = 234

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQ----PLPKVG----VWAYA--EQAVITL--CAYAWDDEPVKLWDRT 48
           M ++  D ET         + ++G    V  Y    Q  + L        DE V +   T
Sbjct: 1   MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 49  EQ--------SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
            +          +  +LL+++  +  M +AHN+ F+        K+     I     I T
Sbjct: 61  NERLKGEKKFDDIADELLEFI--DGAMMIAHNANFDISFLNAELKRVNKPLISIDNVIDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             +AR      P+SL   C      
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGID 143


>gi|229472209|gb|ACQ72619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472325|gb|ACQ72677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472333|gb|ACQ72681.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472437|gb|ACQ72733.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G+ +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRKLFKASPGQIMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VTAVKSKA-ESGFINLCDGRRC 144


>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 311

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 20/124 (16%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             LL  L +  V+ V H +  +    ++  G+ I       T   AR    P    +   
Sbjct: 203 EVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLYI--VNLFDTMRAARALKFPR--ASYAY 258

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L                        D               +   +Y  +D     +++
Sbjct: 259 VLQH---------------YVDGLHADKSAQLADWRVRPLP-EALQQYAIQDTAYLLDIY 302

Query: 175 KRLI 178
            R+ 
Sbjct: 303 DRMR 306


>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
          Length = 628

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 45/156 (28%), Gaps = 10/156 (6%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAV-----ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +D+E+  P  +  + +             ++L   +  ++   +            L + 
Sbjct: 17  LDVESTKPIWVDTLRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLNEV 76

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             D  ++ V H +  + +  ++ LG+ +       T   +   G      +    L    
Sbjct: 77  FADPGIVKVFHGAFMDVVWLQRDLGVYV--VGLFDTHHASTVLGYGGG--SLAFLLK-KF 131

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
              + ++   L     +       Y      H   +
Sbjct: 132 VGFEADKRWQLADWRIRPLPAEMLYYARADTHYLLY 167


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSP-------------------QPLPKVGVWAYAEQAVITLCAYAWDDEP 41
           M ++  D ET                           + ++   E   +   A A     
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAV---H 57

Query: 42  VKLWDRTEQSA----MPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW 93
               D  +       +  ++ ++        VAHN+ F+       F +     + S+  
Sbjct: 58  GITDDFLKDKPKFAEVVDEIREFFE--GARWVAHNATFDMGFINAEFARLGIAPVSSELV 115

Query: 94  ICTSVLARTNGL--PSSLKNACLALNFS 119
             T  LAR      P+SL   C      
Sbjct: 116 TDTLSLARRKHPMGPNSLDALCRRYGID 143


>gi|262342279|gb|ACY54650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212357|gb|ACY35795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
 gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
          Length = 400

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 50/166 (30%), Gaps = 25/166 (15%)

Query: 28  AVITLCAYAWDDEPV---KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A + L   +W D       L D       P  +L+ + D  V+ VAH +  +  +     
Sbjct: 44  AELALVQVSWGDPEAPEIALIDSVAVDPTP--VLRLIGDPAVVSVAHAAKQDLGILA--A 99

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
             DI ++ +  T + A   G           + +         GK + A        +  
Sbjct: 100 RFDIFAENFWDTQIAAAFVG-------MAEQIGY---------GKLVDALLGVQLDKASQ 143

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           +       +   QL   Y   DV     ++  L    D       +
Sbjct: 144 FTKWLERPLSPAQL--RYAADDVRYLPRVWAHLSQRLDELGRRAWV 187


>gi|262342269|gb|ACY54645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342289|gb|ACY54655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342317|gb|ACY54669.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342319|gb|ACY54670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342323|gb|ACY54672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342325|gb|ACY54673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212399|gb|ACY35816.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342299|gb|ACY54660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|229472235|gb|ACQ72632.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472491|gb|ACQ72760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 377

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 22/225 (9%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L       +  P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIEPLLINNWAP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHV-QAWQLFGEYCKRDVEA-TRELFKRLI 178
              + +G+       +   D+   Y    A H+ + + +       D  A   +    L+
Sbjct: 129 NIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRLSDDKYAWLLDDGAELV 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                E D + + +      +++    +  L+EL A    +    
Sbjct: 189 ANLRREVDPYEVYRDA-KLAWKLSRAQLAVLRELCAWREVQARAR 232


>gi|311347844|gb|ADP90867.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 960  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1064

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1065 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|158255998|dbj|BAF83970.1| unnamed protein product [Homo sapiens]
          Length = 1239

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 960  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1064

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1065 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|114658821|ref|XP_523149.2| PREDICTED: polymerase (DNA directed), gamma [Pan troglodytes]
          Length = 1236

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 838  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 896

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 897  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 956

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 957  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1007

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1008 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1061

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1062 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1121

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1122 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1160


>gi|21779923|gb|AAM77583.1|AF497906_1 polymerase (DNA directed), gamma [Homo sapiens]
          Length = 1240

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 842  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 900

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 901  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 960

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 961  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1011

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1012 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1065

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1066 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1125

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1126 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1164


>gi|4505937|ref|NP_002684.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|187171277|ref|NP_001119603.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|1706507|sp|P54098|DPOG1_HUMAN RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|1399956|gb|AAC50712.1| DNA polymerase gamma [Homo sapiens]
 gi|1438508|emb|CAA66719.1| DNA polymerase gamma [Homo sapiens]
 gi|27502689|gb|AAH42571.1| Polymerase (DNA directed), gamma [Homo sapiens]
 gi|29791648|gb|AAH50559.1| POLG protein [Homo sapiens]
 gi|119622450|gb|EAX02045.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|119622452|gb|EAX02047.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|311347818|gb|ADP90854.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347820|gb|ADP90855.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347822|gb|ADP90856.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347824|gb|ADP90857.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347826|gb|ADP90858.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347828|gb|ADP90859.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347830|gb|ADP90860.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347832|gb|ADP90861.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347834|gb|ADP90862.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347836|gb|ADP90863.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347838|gb|ADP90864.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347840|gb|ADP90865.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347842|gb|ADP90866.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347846|gb|ADP90868.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347848|gb|ADP90869.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347850|gb|ADP90870.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347854|gb|ADP90872.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347856|gb|ADP90873.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347858|gb|ADP90874.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347860|gb|ADP90875.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347862|gb|ADP90876.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347864|gb|ADP90877.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347866|gb|ADP90878.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347868|gb|ADP90879.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347870|gb|ADP90880.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347872|gb|ADP90881.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347874|gb|ADP90882.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347876|gb|ADP90883.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347880|gb|ADP90885.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347882|gb|ADP90886.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347884|gb|ADP90887.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347886|gb|ADP90888.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347888|gb|ADP90889.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347890|gb|ADP90890.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347892|gb|ADP90891.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347894|gb|ADP90892.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347896|gb|ADP90893.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 960  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1064

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1065 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|1644239|dbj|BAA12223.1| mitochondrial DNA polymerase gamma [Homo sapiens]
          Length = 1241

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 843  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 901

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 902  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 961

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 962  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1012

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1013 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1066

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1067 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1126

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1127 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1165


>gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 936

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 40/173 (23%), Gaps = 22/173 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
               +D E  S +                 L   +  +E   L D          L    
Sbjct: 133 RVFAVDTEQHSLRSFLGFTA----------LIQISTQNED-YLVDTIALHDTLDVLQPVF 181

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + ++  V H +  + +  ++     I       T+        P   K+    L     
Sbjct: 182 ANPSICKVFHGADNDVLWLQR--DFHIYVVNLFDTAKACEVLSKPQ--KSLAYLL----- 232

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             +   G A      +      P       + Q    +  Y    + A     
Sbjct: 233 --ETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQH 283


>gi|262212385|gb|ACY35809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212383|gb|ACY35808.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|294654453|ref|XP_456510.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
 gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii]
          Length = 776

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 16/126 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S++ ID+E              Y     I      +  D+   + D  +       L + 
Sbjct: 251 SEIAIDLE-----------HHDYRSYYGIVCLMQISSRDQDW-IIDTLKLRDDLESLNKV 298

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS 119
             +  ++ V H +  + I  ++ LG+ I       T   ++  G P  SL          
Sbjct: 299 FTNPDIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASKKLGFPKFSLAYLLETFANF 356

Query: 120 EHLTKM 125
           +   K 
Sbjct: 357 KTSKKY 362


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 40/139 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLW-------------- 45
           M+ + ID ET + +      +     +   I         E V                 
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEII--------EEVHHLIKPKEMRFMPINIG 52

Query: 46  ----------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKR 92
                     D  E   +   +  Y  ++  + +AHN+ F+  + +       +++PS +
Sbjct: 53  IHGIRPRMVQDELEFDKVWEKIKHYF-NKN-LVIAHNASFDISVLRNTLELYNLEMPSFQ 110

Query: 93  WICTSVLARTNGLPSSLKN 111
           +ICT  L+R     S+L N
Sbjct: 111 YICTMKLSR--NFYSNLDN 127


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 6/57 (10%)

Query: 71  HNSLFERILFKKTLG---IDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHL 122
           HN  F+        G   I +  +  + T +LA         SL+     L      
Sbjct: 517 HNVAFDLKFLHAAQGETGIALR-QPVLDTMILAALLDPGYDLSLEAVAGRLGVPPLP 572


>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris]
          Length = 245

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDETV---------------MCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+ V                 + HN+ F+               G  I     +
Sbjct: 60  TLEFLADKPVFAEVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDQFGRIIDRATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|311347852|gb|ADP90871.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 960  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1064

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1065 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSHVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|262212361|gb|ACY35797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 233

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEP---------- 41
           M ++F+D ET     L         E   + L           +  +             
Sbjct: 1   MRQIFLDTETTG---LSADTGDRIIEIGCVELFKRKLTGNNKHFYLNPGRESHEDALRVH 57

Query: 42  ----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GIDIPSK 91
                 L D+ +  A+  +LL Y++D  +  + HN+ F+     K L             
Sbjct: 58  GITSAFLKDKPKFEAVADELLAYVKDAEI--IIHNAPFDLGFLNKELALLGRPRFKEFVG 115

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
               T V+A+    G  +SL   C  L   
Sbjct: 116 SVTDTLVMAKEMFPGKRNSLNALCDRLGVD 145


>gi|71735368|ref|YP_276338.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555921|gb|AAZ35132.1| DNA polymerase I domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 512

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 80/296 (27%), Gaps = 47/296 (15%)

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +  ER +     +    G  ID   +   +E I  +     +      +  +       
Sbjct: 151 FTKIERPVAEYLISSAAAGIAIDSARLRVHKENIEFDYYMALKKFSAEYNLPLELPSNDD 210

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299
            +        G D           +         A DL+  R  +    +        A+
Sbjct: 211 IVHRL--EPLGYDF--SGVDVDYVLNFVPMNDNFAIDLLNLRKIAKSRNV------LNAI 260

Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359
               +    +     S T R        QNL +                           
Sbjct: 261 PLSQKRIFPIVDCFGSITSRIYFKDPSLQNLAKHH------------------------- 295

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                R+ +I  +GK     D    EA ++A ++ ++  +  +A+G+             
Sbjct: 296 -----RNILIPDDGKVFSYVDYEQYEAGIMAALSNDETLLTLYADGDLYKQVASGI---- 346

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                 +E+R   K + L+  Y    +     A   G D +      K   TFE W
Sbjct: 347 ---FQDEERRKEAKRLFLSYAYGMKNRHLIDAAFGYGADRRLTKDFFKRFETFEKW 399


>gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 377

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 73/293 (24%), Gaps = 39/293 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 DIDLPKGETRSDWLQRPLS----------------ETQITYAAEDAVHLAELFTILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++    +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
                  +   +   L       L ++        +  +      L    +A 
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|229472557|gb|ACQ72793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADR 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 377

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 73/293 (24%), Gaps = 39/293 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 DIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFTILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++    +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
                  +   +   L       L ++        +  +      L    +A 
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|262342309|gb|ACY54665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +    NG    +        
Sbjct: 7   PSGHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARCDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642]
          Length = 377

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 73/293 (24%), Gaps = 39/293 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 DIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFTILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++    +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
                  +   +   L       L ++        +  +      L    +A 
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|229472337|gb|ACQ72683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIRLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|262342123|gb|ACY54572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212391|gb|ACY35812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212363|gb|ACY35798.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212401|gb|ACY35817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212413|gb|ACY35823.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212415|gb|ACY35824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342105|gb|ACY54563.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342275|gb|ACY54648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342277|gb|ACY54649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342281|gb|ACY54651.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342287|gb|ACY54654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342291|gb|ACY54656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342293|gb|ACY54657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342297|gb|ACY54659.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342301|gb|ACY54661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342307|gb|ACY54664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2]
 gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2]
          Length = 385

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 55/244 (22%), Gaps = 24/244 (9%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           + +D E         V    Y     I  L      D    + D      + + L   + 
Sbjct: 25  IALDTE--------FVRTDTY---FSILSLIQIQTHDGQAAIIDPLAIEDLTA-LWSIIS 72

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V  V H++  +  +  +  G          T +          L             
Sbjct: 73  NPNVRKVFHSARQDIEVLYQVSGQ--MPISIYDTQIACLFL-QHGDLAGLARV-----VK 124

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            ++                                L   Y K   E T +    L     
Sbjct: 125 AELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQQQAALEEDFQ 184

Query: 183 G--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
                DL+ +D     +  +     + +  + IA +  +  E      +   R       
Sbjct: 185 ALLNEDLYKIDIKAAGKKIKA-AKKLSRKNKAIAYKLAEWREQFAIENNKPKRWVMSDEV 243

Query: 241 LRMY 244
           L   
Sbjct: 244 LVAI 247


>gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
 gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
          Length = 241

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 41/158 (25%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWA---------YAEQAVITLCA 34
           M ++ +D ET    P                 +     +           AE   +    
Sbjct: 1   MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPERMMPAEAFGVHGIG 60

Query: 35  YAW-----DDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTL 84
                     EP ++        + + + Q  RD       V HN+ F+        + +
Sbjct: 61  PDILEPPQQPEPGQV--TLRDKPVFAKVGQAFRDFVADSHLVIHNASFDMKFLNAELRWM 118

Query: 85  GI-DIPSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
           G+ +IP  R I T  +AR    G P++L   C      
Sbjct: 119 GLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGID 156


>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 409

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E        +  +  Y     ++L   ++  E   + D        S + + +
Sbjct: 39  KFIAVDTE------FIRNNLIYY---PKLSLIQISY-GEKSFIVDTLVPEIDLSFIKKIM 88

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ +  V H+   +                   T V A                     
Sbjct: 89  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFC-----------HYYHDFI 135

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    IA     + +S       +           Y   DV    +L++ L   
Sbjct: 136 GYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCNK 189

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 190 LEENNRMGWFQEEME 204


>gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d]
          Length = 287

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 36/142 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----------------------AVITLCAYAWDDEP 41
           FID+ET    PL    +   A Q                       A +T  AY    E 
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSV 98
                         +L  +L +   + VAHN+ F+     +     +  P     +CT  
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LA--RTNGLPSSLKNACLALNF 118
           L+      +  SL      L F
Sbjct: 187 LSKRAILSMRYSLSFLKELLGF 208


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 30/149 (20%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET    P                  L    +  Y      I   A       
Sbjct: 1   MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPDRDIDAGAMQVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDI---PSKRWI 94
            +   D+     +  + + ++  +    + HN+ F+        + LG+ +         
Sbjct: 61  PEFLQDKPRFGDIAREFVDFI--DGAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGVT 118

Query: 95  CTSVLARTNGLPS--SLKNACLALNFSEH 121
            T  +A+        +L   C        
Sbjct: 119 DTLAMAKALHPGQRNNLDALCKRYAVDNT 147


>gi|262342311|gb|ACY54666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G        +   +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLSGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212397|gb|ACY35815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYRDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAAIAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262212387|gb|ACY35810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|258646762|ref|ZP_05734231.1| exonuclease [Dialister invisus DSM 15470]
 gi|260404188|gb|EEW97735.1| exonuclease [Dialister invisus DSM 15470]
          Length = 207

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 28/185 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA-VIT---------------LCAYAWDDEPVKL 44
           M    ID ET    P     +         IT                     +   +  
Sbjct: 1   MKYAAIDFETAYWGPGSACSLGISVSDGNEITEEWYRLIRPYRMNFDPICMRVNG--IYP 58

Query: 45  WDRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLG-IDIPSKRWI--CTSVLA 100
            D  ++ A P+   +     E  +  AHN+ F+  +    L   D+P   ++   T  ++
Sbjct: 59  DDVEKEPAFPAFWKEVAERLEGSIVFAHNARFDMGVLASVLDVYDLPDIHFLYGDTVAVS 118

Query: 101 RTN---GLPSSLKNACLALNFS---EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
           R          L     +L +               +I R      ++       A    
Sbjct: 119 RMLWKELPNHKLDTVAGSLGYDFNHHQALDDARACEMIVRKAVEKTEAVTIKEMMARLKL 178

Query: 155 AWQLF 159
             + F
Sbjct: 179 PLKKF 183


>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 244

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKKT-------LGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  I     +
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDGYGRIIDRATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193]
 gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193]
          Length = 385

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    +    L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQIAFSGDGENDAVLVDPLSEGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RDE+V+ V H +  +  +F   +  ++  K    T V A   G          
Sbjct: 67  EPLYALFRDESVVKVFHAARQDLEIF--WVDANVFPKPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K +     K S  +       +   QA      Y   DV   R ++
Sbjct: 117 ----DQVGYETLVRKIVKEGVDKSSRFTDWSRRPLSEAQQA------YALADVTHLRRVY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EYLAADLERSGRSHWV 182


>gi|317150544|ref|XP_001824106.2| DNA polymerase gamma [Aspergillus oryzae RIB40]
          Length = 1107

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 62/295 (21%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 669 GSELKAMIKAPPGYVFVGADVDSQELWIAS-LIGDAQFQIHGGNAIGFMTLEGSKAAGTD 727

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   ++       + +               
Sbjct: 728 MHSRTAKILGISRNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQ----------- 776

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                      +      ++         +         G      +  E FA   +   
Sbjct: 777 -----------EVATKLYQETKGARTTRRILSDSPFWRGGTESFVFNKLEEFADQERPRT 825

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                 +              +                                      
Sbjct: 826 PTLGAGITEALMRRFINRGSFMTSR----------------------------------- 850

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 851 -INWAIQSSGVDYLHLLIIAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAA 904


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 28/142 (19%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAEQAVITLCAY--------AWDDEPVKLW----DRT 48
            D ET    P     + ++G        ++   ++            E VK+     D  
Sbjct: 455 FDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPERGVSPESVKIHGITPDML 514

Query: 49  EQSAMPSDLLQYL--RDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLART 102
                 + +L       +  + +AHN+ F+    +  L   +   R+      T +L+  
Sbjct: 515 AGQPTIARVLPAFHAFAQDTVLIAHNAAFDMRFLQ--LKETMTGLRFDQPVLDTLLLSAV 572

Query: 103 NGL---PSSLKNACLALNFSEH 121
                    L+     LN +  
Sbjct: 573 VHPNQESHRLEAIAERLNLTII 594


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 48  TEQSAMPSDLLQYLR-DETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS-VLART 102
           T      +   ++    +  + V HN  F+  +     + +GI+ PS RW  T  +  R 
Sbjct: 521 THGQPAATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPSPRWEDTLNLAHRF 580

Query: 103 N-GLPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                  L     +LN S   T     +    +        +        +A        
Sbjct: 581 IQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAILPLLDSGRTARQALVAAYADQ 640

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
           F     +  +  R+L  +L P +  E+ LW 
Sbjct: 641 FRPLAAQFAQW-RDLSHQLRPAALMEKVLWE 670


>gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597]
 gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597]
          Length = 385

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DDE   L D    +   
Sbjct: 22  YVTVDTEFLRERTYYS---------------QLCLIQMAMPGEDDENAVLIDPLSGNLDL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L +  R++ V+ V H +  +  +F   +   +  +    T + A   G          
Sbjct: 67  APLYELFRNQAVVKVFHAARQDLEIF--YVDAGVIPQPLFDTQIAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ R  K  +D        +      +   +Y   DV   R+++
Sbjct: 118 QVGYET----------LVKRIAKQQLDKSSRFTDWSRRPLT-EAQKKYALADVTHLRKIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L      ++    +
Sbjct: 167 EYLADKLRRQKREAWV 182


>gi|70997278|ref|XP_753389.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|66851025|gb|EAL91351.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|159126884|gb|EDP52000.1| DNA polymerase gamma [Aspergillus fumigatus A1163]
          Length = 1135

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 71/264 (26%), Gaps = 9/264 (3%)

Query: 320 WSGCVFQ-PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
            +G        +  Q      +T+                     +++ I A  G   V 
Sbjct: 657 STGEKSNRLGFILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYVFVG 716

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE----QRAIGKV 434
           AD+   E  + + + G+        N         +KA  T +   + +     R   KV
Sbjct: 717 ADVDSQELWIAS-LVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTAQILGISRNDAKV 775

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                 Y  G K   T+       + +      +T+ + + +   +    + +       
Sbjct: 776 FNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATNLYRETKGTRTTRRILSENPFWRGG 835

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            +  +    E      R        L   +TE         GS    R+    +     +
Sbjct: 836 TESFVFNKLEEFADQER---PRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDY 892

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCS 578
              + I +    R    D +   +
Sbjct: 893 LHLLIISMDYLIRRFNIDARLAIT 916


>gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 178

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LCA----YAWDDEPVKLW---DR 47
           M+ + +D ET SP+      +  A      I      L      + W +  +      D 
Sbjct: 1   MNFIAMDFETASPKRYSACSLSLAIVRDNQIVDEFYSLINPQTPFNWRNIQIHGIHERDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLART 102
                 P              + +AHN+ F+  + K       I  P+ + + T   ++ 
Sbjct: 61  ANAPIFPEVWKHIAPFYTPDKLVIAHNATFDNSVLKNTLEHYKITPPAYQTLDTLRTSQK 120

Query: 103 NGLP---SSLKNACLALNFS 119
                    L     AL   
Sbjct: 121 LLPRLPNHKLNTVADALKIE 140


>gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38]
 gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38]
          Length = 287

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 36/142 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----------------------AVITLCAYAWDDEP 41
           FID+ET    PL    +   A Q                       A +T  AY    E 
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSV 98
                         +L  +L +   + VAHN+ F+     +     +  P     +CT  
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LA--RTNGLPSSLKNACLALNF 118
           L+      +  SL      L F
Sbjct: 187 LSKRAILSMRYSLSFLKELLGF 208


>gi|308276816|gb|ADO26715.1| Hypothetical protein CpI19_1452 [Corynebacterium
          pseudotuberculosis I19]
          Length = 121

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 16 LPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
          L K G++ YA+     + L  Y  D  PV++ D      +PS++L  L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|300858866|ref|YP_003783849.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686320|gb|ADK29242.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206573|gb|ADL10915.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis C231]
 gi|302331128|gb|ADL21322.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis 1002]
          Length = 117

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 16 LPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
          L K G++ YA+     + L  Y  D  PV++ D      +PS++L  L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
 gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
          Length = 377

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 39/291 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +  +A +       D +   L D     +  P  L   L
Sbjct: 26  FVAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LADLL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+ V H    +  +  +  G     +    T + A    L  S+      L     
Sbjct: 73  EDSGVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 GIELPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFTVLRPRL 172

Query: 182 DGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             ++  W+L+            ++ + + +  +L  +   +    + +L     R +R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNR 232

Query: 239 YALR-MYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGS 287
              R   L   +   +       L ++        +  +      +     
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQDGECLIQLIKR 283


>gi|229472189|gb|ACQ72609.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472331|gb|ACQ72680.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472419|gb|ACQ72724.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472601|gb|ACQ72815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 61/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +  + M          +     +  VHDE
Sbjct: 158 QGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472237|gb|ACQ72633.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472591|gb|ACQ72810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|121713882|ref|XP_001274552.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
 gi|119402705|gb|EAW13126.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
          Length = 1134

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 74/289 (25%), Gaps = 57/289 (19%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 699 GSELKAMIKAPPGYVFVGADVDSQELWIAS-LVGDAQFQLHGGNAIGFMTLEGSKAAGTD 757

Query: 421 IDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +      ++  +++ +
Sbjct: 758 MHSRTAHILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEKETQEVASKLYKETK 817

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            A +    + +        +  +    E   +  R        L   +TE         G
Sbjct: 818 GARTSRRILSENPFWRGGTESFVFNKLEEFAEQER---PRTPALGAGITEALMRRFINKG 874

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
           S    R+    +     +   + I                   ++    +          
Sbjct: 875 SFMTSRINWAIQSSGVDYLHLLII------------------AMDYIIRR---------- 906

Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                                   G  + +TVHDEI     +   +   
Sbjct: 907 ---------------------YNIGARLAITVHDEIRYLVKEEDKYRAA 934


>gi|311347878|gb|ADP90884.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 960  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1064

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1065 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDCYRAALALQITNLLTRCM 1163


>gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354]
          Length = 205

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 46/185 (24%), Gaps = 36/185 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR 62
           + +D ET          +     +  + L   +       L      S+  + +L   L 
Sbjct: 20  VAVDTET----------MGLITRRDRLCLVQISDGKGDEHLVRFGVDSSFDAPNLKAVLA 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119
           D     + H   F+    +  LG+        CT + +   RT      LK     L   
Sbjct: 70  DPARTKLYHFGRFDLAAIEYWLGVTAAP--VFCTKIASKLTRTYTDRHGLKMLVSELLGE 127

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           +                K    S        +  +      EY   DV     L      
Sbjct: 128 DIS--------------KQQQSSDWGAPKINDAQR------EYAASDVRYLHRLRDIFEE 167

Query: 180 LSDGE 184
               E
Sbjct: 168 RLARE 172


>gi|229472349|gb|ACQ72689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 60/275 (21%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDATPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  VHDE
Sbjct: 158 QGSAGCVAKRWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 386

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E        +     Y     + L   A+      + D  ++    S L +   D
Sbjct: 28  LAIDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E +  V H+   +     +        +    T          +S+   C   + S   +
Sbjct: 78  EGIYKVFHDCRQDLDALSQRF--TRLPRPIFDT--------QTASM--LCEYHDNSVGYS 125

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           K+ E      +F    ++   +     +H    +    Y   DV    EL++ L+ +   
Sbjct: 126 KLVE------QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTA 179

Query: 184 ERDLWLLDQTIND 196
           +  L    + + +
Sbjct: 180 KERLTWFLEEMEN 192


>gi|262342111|gb|ACY54566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I S G+ +V ADL+GIE R+LA        +  +  G    +        
Sbjct: 7   PSDGRFRELFIPSPGQLMVGADLSGIELRMLAHY------LARYDGGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+   +R +  V   A  Y  G     T       + +   +  +  S F      
Sbjct: 61  VNADKIGISRREVKTV-TYAFLYGAGDAKIGTSFDSSLSETKAKKKGKEIRSAFISAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +         +    
Sbjct: 120 LDELLSAIKEASTRGFVRSIDQRK 143


>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
          Length = 295

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 53/194 (27%), Gaps = 33/194 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D E+ S         +AY +   + L   +  +    + D      + S L +  
Sbjct: 24  RHLAVDTESNS--------FYAYFD--RVCLIQISSPERD-YIIDPLSLKDL-SVLGRLF 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  +  V H +  + +  ++             T++  +  G           L  S+ 
Sbjct: 72  ENPRIEKVLHAASNDVLGLRRDFQFRFNG--LFDTAIACKLLGY--------KQLGLSKI 121

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +   G +L  R+ +      P    + +          Y + D      L   L    
Sbjct: 122 -LETHFGVSLNKRWQRYDWGKRPLVPDQLD----------YARLDTHYLIALRHMLAADL 170

Query: 182 DGERDLWLLDQTIN 195
                     +   
Sbjct: 171 QSRELWAEACEAFE 184


>gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
 gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 46/210 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                 A + L   A+    +E   L D   +    
Sbjct: 22  YVTVDTEFLRERTYY---------------AKLCLVQLAYPGEGEETAVLVDPLAEGMSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + +L   R+  V+ V H +  +  +F    G  +  +    T V A   G          
Sbjct: 67  APMLDLFRNPDVVKVFHAARQDLEIFFVEHG--VFPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ +  + S+D      T  +H    +   +Y   DV   R ++
Sbjct: 118 QVGYET----------LVRKIARESLDKT-SRFTDWSHRPLSKAQKKYALADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           + L    D       ++    +    +D +
Sbjct: 167 EYLAAAIDKTGRRAWVE---EELQGLLDPE 193


>gi|262212367|gb|ACY35800.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212379|gb|ACY35806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K    A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTATYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 377

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 73/293 (24%), Gaps = 39/293 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 DIDLPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFTILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++    +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
                  +   +   L       L ++        +  +      L    +A 
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
 gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
          Length = 186

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 40  EPVKLWDRTEQSAMPS--DLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKR 92
           + V      +    P    +    RD  +  + V HN+ F+        K  G    +  
Sbjct: 60  QKVHGISNMDIEEAPDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNP 119

Query: 93  WICTSVLA-RTNGLPSSLKNACLALNFSEH 121
           +I T  L+    G P SLK  C  L     
Sbjct: 120 YIDTLDLSEEIFGRPHSLKWLCERLGIKTT 149


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -LQYLRDE---------------TVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
            L++L D+                   + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDNYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
 gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
          Length = 383

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 72/268 (26%), Gaps = 55/268 (20%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   I L   A ++  V L D        P  +
Sbjct: 40  IALDTEFVRTRTYY---------------PHIGLLQIADENG-VYLIDPLAISDTQP--M 81

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L++  ++ V H    +  +F+   G  +  +    T V A   G  SS         
Sbjct: 82  ADVLQNPAIVKVVHACSEDLEVFQYAFG--VLPESLFDTQVAAGFAGYGSS--------- 130

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     G A + R  K          +             Y   DVE   E+++ L
Sbjct: 131 ---------IGYANLLREIKRIDIPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGL 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ--------ELIAQERKKLDEDIVKLTD 229
           +     ++ L  ++        ++                 +L A++   L         
Sbjct: 182 VEKLQQQQRLLWVEADCQRMIEKLRNTSHENTYYTRVKSAWKLDAEQLTVLAAICRWREG 241

Query: 230 GIIRS--SRQTYALRMYLFL-ITGIDLV 254
              ++   R      + LF     + + 
Sbjct: 242 QAKKNDVPRSRILKDVSLFDIALKLPMD 269


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQ----PLPKVG----VWAYA--EQAVITL--CAYAWDDEPVKLWDRT 48
           M ++  D ET         + ++G    V  Y    Q  + L        DE V +   T
Sbjct: 1   MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 49  EQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-ID---IPSKRWICT 96
            +          +  + L+++  +    VAHN+ F+       LG I+   I     I T
Sbjct: 61  NERLKNEKKFEDIADEFLEFI--DGATMVAHNASFDISFLNAELGRINKPLISVDNVIDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             +AR      P+SL   C      
Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGID 143


>gi|331229914|ref|XP_003327622.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309306612|gb|EFP83203.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1303

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 65/255 (25%), Gaps = 9/255 (3%)

Query: 281  RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            R A S S        +     D  +         +          Q   LP+      I 
Sbjct: 756  RQALSMSMQCSYWLNASQRIKDQMVIWESSLPQENSDNPEPSRCKQGLILPQVTVMGTIT 815

Query: 341  TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
             +  +                  ++S I A  G  +V AD+   E  + + + G+     
Sbjct: 816  RRATEKT-WLAAANAKKNKIGTELKSMIRAPPGYAIVGADVDSEELWISS-VMGDAQFGM 873

Query: 401  AFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              A           K   T +   +       R   KV   +  Y  G      +     
Sbjct: 874  HGATAIGWMTLEGTKVAGTDLHSKTASILGISRNDAKVFNYSRIYGAGIAHAVQLLMKAD 933

Query: 457  LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516
                +      +   +   +  +++   M ++   +   +  +    E +  A   ++  
Sbjct: 934  PTASKTEATKLAKQLYASTKGVKNYRADMFERKFWYGGTESYLFNKLEQIALA---EYPE 990

Query: 517  VLQLWKDLTEGFACV 531
               L   +T      
Sbjct: 991  TPALNCGITRALRKC 1005


>gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
 gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
          Length = 186

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 38/145 (26%), Gaps = 35/145 (24%)

Query: 6   IDIETRSPQPLPKVGVWAYAE------------------QAVIT---LCAYAWDDEPVKL 44
           +D ET    P     +   A                      I    L         V  
Sbjct: 11  VDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALIQ------KVHG 64

Query: 45  WDRTEQSAMPS--DLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS 97
               +    P    +    RD  +  + V HN+ F+        K  G    +  +I T 
Sbjct: 65  ISNMDIEEAPDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTL 124

Query: 98  VLA-RTNGLPSSLKNACLALNFSEH 121
            L+    G P SLK  C  L     
Sbjct: 125 DLSEEIFGRPHSLKWLCERLGIKTT 149


>gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a]
 gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a]
          Length = 377

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 73/293 (24%), Gaps = 39/293 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              + +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 DIDLPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFTILRPRL 172

Query: 182 DGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             ++  WLLD       +    +D  ++    +      R +L             +  +
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARAR 232

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
                  +   +   L       L ++        +  +      L    +A 
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|262342099|gb|ACY54560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRRAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET   +      V        +     + ++    L    +      ++   
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVE-IGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGL 59

Query: 58  -------LQYLRD---------ETVMCVAHNSLFERILFKK-------TLGIDIPSKRWI 94
                       D         +    + HN+ F+               G  +     +
Sbjct: 60  TLEFLADKPLFADVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDNYGRIVERATVV 119

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T ++A  R  G  +SL   C  L   
Sbjct: 120 DTLMMARERYPGQRNSLDALCKRLGVD 146


>gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 209

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     E   IT  AY+        +D E +++     +  +
Sbjct: 4   FVALDFETANKYKNSACSLAVITVENGQITKKAYSLIKPPFMSFDPECIEIHGIEPKEVL 63

Query: 54  PS----DLLQYL-RD--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L   +  +  +  + +AHN+ F+  + +       I  P   + CT  ++R  
Sbjct: 64  HEKTFDQLWPAIYENHLKGKIMIAHNAKFDMNVLRATLDYYNIPWPELDYACTVKISRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      L   
Sbjct: 124 WPDLVNHKLNTMAAYLGVE 142


>gi|262342271|gb|ACY54646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEVRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
          Length = 401

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E        +     Y     + L   A+      + D  ++    S L +   D
Sbjct: 28  LAIDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E +  V H+   +     +        +    T          +S+   C   + S   +
Sbjct: 78  EGIYKVFHDCRQDLDALSQRF--TRLPRPIFDT--------QTASM--LCEYHDNSVGYS 125

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           K+ E      +F    ++   +     +H    +    Y   DV    EL++ L+ +   
Sbjct: 126 KLVE------QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTA 179

Query: 184 ERDLWLLDQTIND 196
           +  L    + + +
Sbjct: 180 KERLTWFLEEMEN 192


>gi|262342283|gb|ACY54652.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                      +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQVYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
 gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
          Length = 223

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 41/158 (25%), Gaps = 44/158 (27%)

Query: 1   MSKLFIDIETRSPQPL------------------PKVGVWAYAE----QAVITLCAYAWD 38
           +S + +D ET    P                      GV  Y +                
Sbjct: 37  LSFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIPVHGLIG 96

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWIC 95
           +E                +L+Y  +   + V H+  F+  + +K     G+D    + I 
Sbjct: 97  NEEA--VPL---EQFAKRVLEYFENN--ILVGHHLGFDLEMLEKALKPFGLDKIQNKCID 149

Query: 96  TSVLARTNGLP------------SSLKNACLALNFSEH 121
           T  LA                   SL + C   +    
Sbjct: 150 TMSLAIRLDHGLMADRNYIDFKDYSLDSLCQRYDIKTD 187


>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 30/144 (20%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 39  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 97

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 98  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 154

Query: 98  VLARTN--GLPSSLKNACLALNFS 119
             AR    G  + L +    L   
Sbjct: 155 DGARRLWRGDSTKLDHCSQRLALR 178


>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 381

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTTEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DPKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++         EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQL------EYALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRTSWLSEEM 180


>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
 gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
          Length = 386

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 49/187 (26%), Gaps = 23/187 (12%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
            E+        +    Y     + L   A         D        + L   + +E+V+
Sbjct: 19  TESFVTVDTEFMREKTYW--PKLCLIQLA-GTTEAHCVDPLAPDIDMAPLFALMANESVL 75

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            V H +  +  +F    G     K    T V A   G      +            +   
Sbjct: 76  KVFHAARQDLEIFLHESGH--LPKPIFDTQVAAMVCGFG---DSVG---------YETLV 121

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            K   AR  K    +        +          Y   DV   R +++RL          
Sbjct: 122 AKLAKARIDKSMRFTDWARRPLND------RQLVYAAGDVTHLRVVYERLAETLAANGRT 175

Query: 188 WLLDQTI 194
             LDQ +
Sbjct: 176 AWLDQEM 182


>gi|229472561|gb|ACQ72795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 59/275 (21%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L                       
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKVATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|262368015|pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
 gi|262368018|pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
          Length = 1172

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 774  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 832

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 833  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 892

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 893  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 943

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 944  PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 997

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 998  ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1057

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1058 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1096


>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
          Length = 741

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 72/268 (26%), Gaps = 25/268 (9%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   + D     +    L +   D  ++ V H +  +    +K  G+ +   
Sbjct: 259 LMQLSTRSED-YIVDVLRLRSHMHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYV--A 315

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T +  +T  +P SL  A               G  L  ++        P      +
Sbjct: 316 NMFDTGIALQTLHMPHSLAFAVDHF----------CGVRLDKKYQTADWRIRPVPSEMIH 365

Query: 152 HVQAWQLFGEYCKRDVEATR-------ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           + +    +  Y    ++A          +   L+ +    R L             +D  
Sbjct: 366 YARQDTHYLLYVHDRLKALLLHAEGRASVGNLLVHVYQDSRRL--CLTRYEKPMLDVDTT 423

Query: 205 LVLKLQELIAQE-RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
               + + +      +L+   V        +     +    +     + +      + K 
Sbjct: 424 YREAMGKSLGGLSATQLEVLRVVFNWRDQAARDADESPPAIMHASAILQIASKLPTSAKE 483

Query: 264 ILSHSNITQLA--KDLILNRLASSGSAI 289
           IL+      L   +D+         +  
Sbjct: 484 ILACCAPVSLVVRRDIGHLCDLVKKTLT 511


>gi|27476016|ref|NP_775218.1| DNA polymerase2 [Pseudomonas phage PaP3]
 gi|27414446|gb|AAL85532.1| DNA polymerse2 [Pseudomonas phage PaP3]
          Length = 175

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 33/151 (21%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL 99
           P ++        M     + +       V HN L ++  + +K  GI IP +R   T V 
Sbjct: 40  PTQVVRGFRPEEM-ETFYRIIAHAK-FVVGHNILDYDNRVLEKLHGIVIPEERSYDTLVA 97

Query: 100 ARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
           +R          SL      L         +  K     F K S                
Sbjct: 98  SRLTWPDRPMGHSLGAWGRFL---------KCHKGDFNDFSKFS---------------- 132

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
            +   EYC +D   +  LF  L+ +     +
Sbjct: 133 -EEMFEYCLQDGVVSMALFNYLLKVLGMTWE 162


>gi|320541061|ref|ZP_08040484.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
 gi|320028876|gb|EFW11132.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
          Length = 54

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL 44
            L++D+ET S  P+       YAE   + L ++A D +PV++
Sbjct: 3  KILWLDLETYSEIPIKNA-THTYAENVDVILFSWAIDKDPVQV 44


>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
 gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
          Length = 383

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 60/218 (27%), Gaps = 28/218 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A DD  V +    +  ++       + DE+V+ V H +  +  +  K LG  
Sbjct: 37  PELCLIQMASDDTEVLVDPLAKGLSL-DPFFALMADESVVKVFHAARQDLEIVYK-LGAV 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I  K    T + A   G   S                       +               
Sbjct: 95  I-PKPLFDTQIAAMVCGFGES------------------IAYDQLVARLTDGRIDKSSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI-------NDRGYR 200
           T   H         Y   DV   R+++K L    +       LD+ +           + 
Sbjct: 136 TDWRHRPLSDKQLTYALADVTHLRDVYKALKAQLEETSRHSWLDEEMAILADPQTYDLHP 195

Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            D    +K++     E + L E           + R  
Sbjct: 196 DDAWRRMKMRVKKPIELQILKEVAAWREREARSNDRPR 233


>gi|167583629|ref|YP_001671819.1| type I DNA polymerase [Enterobacteria phage phiEco32]
 gi|164375467|gb|ABY52875.1| type I DNA polymerase [Enterobacteria phage phiEco32]
          Length = 185

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 40/176 (22%), Gaps = 19/176 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
              DIE+ +           Y               E            +   + +    
Sbjct: 9   FAFDIESNALYDDITKVWCIYIFDVET--------GERWGYRPH----QIEDGIRKLTE- 55

Query: 64  ETVMCVAHNS-LFERILFKKTLGIDIPSK-RWICTSVLARTNGLPSSLKNACLALNFSEH 121
              + V HN   F+    KK     I        T  L+R         +          
Sbjct: 56  -ADVLVGHNIIDFDLPALKKMYPSLINYHFNVFDTLCLSRYLKPDRIGDS-PEY--PKGD 111

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +   G  L             Y           +    YC++DV  T +++  L
Sbjct: 112 PRRGPRGHGLKQWGEFLGELKGDYGEQEEAWDAFTEDMFTYCEQDVNLTVKVYLFL 167


>gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1]
 gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1]
          Length = 377

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 79/291 (27%), Gaps = 39/291 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +  +A +       D +   L D        P  L   L
Sbjct: 26  FVAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGDWQP--LADLL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+ V H    +  +  +  G     +    T + A    L  S+      L     
Sbjct: 73  EDSGVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNLGFSMGY--SRLVQDVL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   +    Y   D     ELF  L P  
Sbjct: 129 GIELPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFTELRPRL 172

Query: 182 DGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
             ++  W+L+            ++ + + +  +L  +   +    + +L     R +R  
Sbjct: 173 SDDKYTWVLEDGAELVAALRREVEPETLYRDVKLAWKLAPQQLAVLRELCAWREREARHR 232

Query: 239 YALR-MYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGS 287
              R   L   +   +       L ++        +  +      +     
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQDGEFLIQLIKR 283


>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
 gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
          Length = 394

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 30/192 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D        +     + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQIAAPDGTTALVDPLAPGIDLAPFFALMG 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H++  +  +    L   +  + +  T V A   G   S              
Sbjct: 72  DEGVLKVFHSARQDLEII--WLQGGLLPQPFFDTQVAAMVCGYGDS------------VS 117

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +        A+  K S  +       +           Y   DV    ++++ L     
Sbjct: 118 YEQLVNDVAKAKVDKSSRFTDWSRRPLSEAQLT------YALSDVTHLIKVYEALARQLL 171

Query: 183 GERDLWLLDQTI 194
                  LD+ +
Sbjct: 172 ASDRGAWLDEEM 183


>gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
 gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
          Length = 229

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 34/151 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET   +P          E   + L                       A+A  
Sbjct: 1   MREIVLDTETTGFEPEQG---DRIVEIGAVELFNHVPTGETYHQYINPERSMPQEAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
                 L D+   + +  +   ++ D     V HN+ F+       L       +     
Sbjct: 58  GLGDDFLRDKPVFAKIVDEFRTFIGDS--KLVIHNAAFDVKFLNAELRWANRPTLAKDCA 115

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
           I T  +AR    G P+SL   C         
Sbjct: 116 IDTLDIARRKFPGSPASLDALCRRFGIDNSS 146


>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
           helicase-like [Meleagris gallopavo]
          Length = 1569

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 31/234 (13%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +     +A  + A I +       E   L+  +  S  P  L + L DET+        
Sbjct: 163 DIEWPPSYAKGKMAKIAVIQICVTKEKCYLFHISSMSGFPKGLKRLLEDETIKK------ 216

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKAL 131
                     G+ I    W    +++        LK+        N      ++     L
Sbjct: 217 ---------AGVGIEGDHWK---LMS---DFEVKLKSFVELADVANEKLKCKEVWSLNGL 261

Query: 132 IA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           +   F K  +      C         +    Y   D  A   ++++L  ++  +R L+  
Sbjct: 262 VKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAYAGLIIYQKLKNMNSADRKLY-- 319

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
                +R      D V +    +A+E   L   I   +  +    R    L   
Sbjct: 320 ----GERRDDALSDDVKERMTSLAEEMVYLASKISDSSGQLRNLQRSAEILADI 369


>gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
 gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
          Length = 287

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----------------------AVITLCAYAWDDEP 41
           FID+ET    PL    +   A Q                       A +T  AY    E 
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSV 98
                         +L  +L +   + VAHN+ F+     +     +  P     +CT  
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LAR--TNGLPSSLKNACLALNF 118
           L++     +  SL      L F
Sbjct: 187 LSKRTILSMRYSLSFLKELLGF 208


>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
          Length = 996

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 42/205 (20%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           D ET                +  I L   +  +E   + D  +     + L +   D  +
Sbjct: 502 DTETY---------------RGFICLVQLSTPEEN-YIIDPFKIFGKMNKLNRLTTDPKI 545

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNA-CLALNFSEHLTK 124
           + + H +  + +  ++   I +       T   A+   L   SL        N       
Sbjct: 546 LKIMHGASNDVVWLQRDFNIFV--VNLFDTREAAKVLNLAEQSLAKLIQKYFNIK----- 598

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDG 183
                 L  RF        P D              +Y   D      L+  L       
Sbjct: 599 ------LNKRFQLSDWSKRPLDAE----------MLDYACCDSHYLIPLYSALKDEILSK 642

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLK 208
           E     + Q +N+         V +
Sbjct: 643 EDGRVKIIQVMNNGRETCLKQYVDR 667


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 40/139 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLW-------------- 45
           M+ + ID ET + +      +     +   I         E V                 
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGKII--------EEVHHLIKPKEMRFMPINIG 52

Query: 46  ----------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKR 92
                     D  E   +   +  Y  +E  + +AHN+ F+  + +       I++PS +
Sbjct: 53  IHGIRPRMVQDELEFDKVWEKIKHYF-NEN-LVIAHNASFDISVLRNTLELYNIEMPSFQ 110

Query: 93  WICTSVLARTNGLPSSLKN 111
           +ICT  L++     S+L N
Sbjct: 111 YICTMKLSK--NFYSNLDN 127


>gi|262342141|gb|ACY54581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 9/146 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   +A+ G+ +V ADL+GIE R+LA          +  +G            +
Sbjct: 7   PSDKDFRQLFMATPGQIMVGADLSGIELRMLAHY-------LSRFDGGRYAEILLHGDIH 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                     R   K +  A  Y  G     ++          +        +  +    
Sbjct: 60  QENADKIGISRRQVKTVTYAFLYGAGDAKLGRSYDPQLTEKEAKKKGKEIRQAYMDAVPG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTAC 503
            E+    ++ +  E    +   G  C
Sbjct: 120 LETLVTAVKSKA-ELGYINLCDGRRC 144


>gi|298530025|ref|ZP_07017427.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509399|gb|EFI33303.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 966

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 29/172 (16%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIETR      +VG W    +      ++A   +       T      +DL  +L D +
Sbjct: 789 LDIETRYSA--QEVGGWGNCHR---MGVSFAVVFDSRNQEFVTFDQEQAADLGSFLEDFS 843

Query: 66  VMCVAHNS-LFERILFKKTLGIDIPSKRWICTSV--LARTNGLPSSLKNACLALNFSEHL 122
            + V  N   F+  + +     D  S   +   +  +    G   SL +           
Sbjct: 844 -LVVGFNLLKFDYRVLQGLSDYDFSSLPTLD-MLREIEARLGHRLSLDHLARH------- 894

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                G             +      +           EYC++DV  TR+L+
Sbjct: 895 ---TLGTN---------KSANGLMALKWWKEGELDKIVEYCRQDVSVTRDLY 934


>gi|238499913|ref|XP_002381191.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
 gi|220692944|gb|EED49290.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
          Length = 1015

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 62/295 (21%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 577 GSELKAMIKAPPGYVFVGADVDSQELWIAS-LIGDAQFQIHGGNAIGFMTLEGSKAAGTD 635

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   ++       + +               
Sbjct: 636 MHSRTAKILGISRNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQ----------- 684

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                      +      ++         +         G      +  E FA   +   
Sbjct: 685 -----------EVATKLYQETKGARTTRRILSDSPFWRGGTESFVFNKLEEFADQERPRT 733

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                 +              +                                      
Sbjct: 734 PTLGAGITEALMRRFINRGSFMTSR----------------------------------- 758

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 759 -INWAIQSSGVDYLHLLIIAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAA 812


>gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001]
 gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001]
          Length = 384

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D   +        + + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFELMA 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           DE+ + V H++  +  +    L   +    +  T V A   G   S
Sbjct: 72  DESTVKVFHSARQDLEII--WLLGGLLPHPFFDTQVAAMVCGYGDS 115


>gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3]
 gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3]
          Length = 388

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 49/286 (17%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T       K+G+    +   + L       +PV L D +          
Sbjct: 45  LVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLSA-------FW 87

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++ + H+   +  +F    G          + + A   G+   L         
Sbjct: 88  SLLDNPNIIKLVHSCSEDLEVFA-HYGQR-QPTPLFDSQIAASLCGMGHGL--------- 136

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +   C G +       T        +    Y   DV    +L+ +L 
Sbjct: 137 ---------GYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLA 187

Query: 179 PLSDGERDL-WLLDQTINDRGYR-----IDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                +  L WL ++       R     +D   +  ++        +L    V     + 
Sbjct: 188 DKLKAQDRLGWLYEEGERMTEGRLATPDMDTAYLR-VKNAFQLTEHQLAYLKVLAKWRLE 246

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           ++  +  AL   +     I L      ++  +L  +++T+  K + 
Sbjct: 247 KALARDLALGFVIKDHGLIALAKKQPKSMGDLLKLNDLTEQEKRIH 292


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITL-----------CAYAWDDEPVKLWDRTE 49
           F+DIET    P    + ++G+  +     +              +   +       D   
Sbjct: 15  FLDIETTGGNPSHDRITEIGI-RFWRAGAVVGEWQTLVNPETRISPFIESLTGITNDMVA 73

Query: 50  QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNG 104
            + +  D+ + L    +  + VAHN+ F+    K   + LG+ + S + +CT  L+R   
Sbjct: 74  DAPVFEDIAEVLEKQLKDTIFVAHNARFDYGFIKAEFRRLGL-LFSAKVLCTVKLSRKLY 132

Query: 105 LP---SSLKNACLALNFS 119
                 ++          
Sbjct: 133 PGFRRHNMDALIERHGLE 150


>gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4]
 gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4]
          Length = 384

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 49/286 (17%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T       K+G+    +   + L       +PV L D +          
Sbjct: 41  LVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLSA-------FW 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++ + H+   +  +F    G          + + A   G+   L         
Sbjct: 84  SLLDNPNIIKLVHSCSEDLEVFA-HYGQR-QPTPLFDSQIAASLCGMGHGL--------- 132

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +   C G +       T        +    Y   DV    +L+ +L 
Sbjct: 133 ---------GYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLA 183

Query: 179 PLSDGERDL-WLLDQTINDRGYR-----IDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                +  L WL ++       R     +D   +  ++        +L    V     + 
Sbjct: 184 DKLKAQDRLGWLYEEGERMTEGRLAPPDMDTAYLR-VKNAFQLTENQLAYLKVLAKWRLE 242

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           ++  +  AL   +     I L      ++  +L  +++T+  K + 
Sbjct: 243 KALARDLALGFVIKDHGLIALAKKQPKSMSDLLKLNDLTEQEKRIH 288


>gi|170719039|ref|YP_001784196.1| hypothetical protein HSM_0864 [Haemophilus somnus 2336]
 gi|168827168|gb|ACA32539.1| conserved hypothetical protein [Haemophilus somnus 2336]
          Length = 212

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 36/168 (21%)

Query: 28  AVITLCAYAWDD-EPVKL----WDRTEQS-----AMPSDLLQYLRDETVMCVAHNS-LF- 75
             I +   A DD  PV      W   ++           L +++   T + + HN   F 
Sbjct: 59  GEIVVIGAAVDDTSPVLFYCEDWQLPDRETRILTQFNDWLRKHITKATPLMIGHNITKFD 118

Query: 76  ERILFKKTLGIDIPS------KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK 129
           +R +F++++   I             T       G   SL   C  L+  +      +G 
Sbjct: 119 DRFIFQRSVINRIKPCYTPLRHNIYDTMTEWAGYGNTVSLDKLCKVLDIEQKG--DIDGS 176

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            +      G I+                   +YC +DVE  RE++KR+
Sbjct: 177 KVWQYIQDGKINE----------------VAQYCAKDVERVREIYKRM 208


>gi|229472357|gb|ACQ72693.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
          Length = 739

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++L ID+E  S         +   +     L   +  +    + D          L +  
Sbjct: 229 NELAIDLEAHS---------YRTYQGFTC-LMQISTRNAD-YIIDTLYLRDKLHVLNEIF 277

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
            +  V+ V H +  +    ++ LG+ +       T   A+        L+      
Sbjct: 278 TNPAVVKVFHGADSDIPWLQRDLGLYV--VNMFDTYQAAKILNFSRKGLEFLLKHY 331


>gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis]
          Length = 1434

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +    V+   +   + L      ++   L+  +  +  P  L + L DE+V  V     
Sbjct: 76  DIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKV----- 130

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---NACLALNFSEHLTKMEEGKAL 131
                     G+ I   +W    +++        LK         N      +      L
Sbjct: 131 ----------GVGIEGDQWK---LMS---DYELKLKGFIELSEMANQKLRCKEKWSLNGL 174

Query: 132 IARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           I    K  +            +    +    Y   D  A   ++K+L  +   E D + +
Sbjct: 175 IKHLFKEQLIKESSVRCSNWDIFPLTEDQKLYAATDAYAGLLIYKKLEGMDAHESDSFRV 234

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
                 R    D   V +    +++    L   +         + R    +   L    
Sbjct: 235 -----GREGVADCKGVKRQLTDLSKGLMDLVNQVPNSFGCYTEAVRAV-DILEDLSEKL 287


>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           SouthAfrica7]
          Length = 287

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 30/139 (21%)

Query: 5   FIDIETRSPQPLPKVGV---------WAYAEQAVITLCAYAWDDEPVKLWDRT------- 48
           FID+ET    P+    +              +             P  + D T       
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVSGGKIINRFETL---VKVKSVPDYISDLTGIAYEDT 131

Query: 49  ----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLAR 101
                      +L  +L +   + VAHN+ F+     +     +  P     +CT  L+R
Sbjct: 132 LNAPSVYEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSR 189

Query: 102 --TNGLPSSLKNACLALNF 118
                +  SL      L F
Sbjct: 190 RAILSMRYSLSFLKELLGF 208


>gi|229472231|gb|ACQ72630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA        +  +  G    V           DK+
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY------LARYDGGGYGDVLLNGDIHQENADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 67  -GISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 372

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 85/317 (26%), Gaps = 33/317 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E      +     +       I      +D + V L D    S   S  +  L
Sbjct: 27  KVVALDTE-----FIRTRTYYP------ILGLIQLFDGQQVSLIDPNTISDF-SPFVSLL 74

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNF 118
            D+ ++ V H    +  +F+         +  + T V+A   G+  S+   K     LN 
Sbjct: 75  ADKNIIKVLHACSEDLEVFEYQFKQ--LPEPMLDTQVMAAFAGIGISMGFAKLVSHYLNI 132

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G +      +                  W L   Y K     T+  ++  +
Sbjct: 133 ELDK-----GASRTDWLARPLSAEQLQ----YAAADVWYLLPVYEKLAQALTKSTWQSAV 183

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +    L    Q IN      ++    +L        + L +  ++       +    
Sbjct: 184 AE-ECVALLKKAKQPINKEKAYKNIANAWRLNREELAILQVLAKWRIEEAQKRNLALNFV 242

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLS 296
                 + +         +   L+ +  H N  ++    IL  +    +  +      + 
Sbjct: 243 VKEASLVQIA--KSCPKHTSSLLEFM--HPNEVRIHGKKILWLVEQGKAIESNDYPELIQ 298

Query: 297 EAVSSDGRLRGTLQFYG 313
             V   G          
Sbjct: 299 RLVDEKGYKYYMQAMLQ 315


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 44/189 (23%), Gaps = 38/189 (20%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-----------------------LW 45
           ET     +   G+ A     VI L A       +                          
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D    +    ++ +           VAHN+ F+        K  G+D P    I T  LA
Sbjct: 475 DMLTDAPEVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           R          L   C  L      +          G  L+            Y     +
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHNQLND 594

Query: 152 HVQAWQLFG 160
            +     + 
Sbjct: 595 SMGQGDAYK 603


>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
 gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
          Length = 385

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 43/200 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD    L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAMPGTDDSNGCLVDPLVEGISL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F+   G  +       T V +   G          
Sbjct: 67  EPLYDLFRDTSVVKVFHAARQDIEIFQVDAG--VIPTPLFDTQVASMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K       K S  +       ++         +Y   DV   R+++
Sbjct: 117 ----EQVGYETLVRKIAKQEIDKSSRFTDWSRRPLSDAQ------AKYALADVTHLRQVY 166

Query: 175 KRLIPLSDGERDLWLLDQTI 194
           + L      +     +D+ +
Sbjct: 167 EFLAKKLKDQGRSHWVDEEM 186


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 35/150 (23%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAEQAVITLC-AYAWDDEP 41
           + ++ +D ET    P                  L       Y          AY      
Sbjct: 4   LREIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPERDMPFEAYKIHGIS 63

Query: 42  VKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPSK 91
            +            + +D L+++ D     + HN+ F+           K+T    +   
Sbjct: 64  GEFLKDKPLFH--TIANDFLKFIADS--TLIIHNAPFDIKFLNHELSLLKRTEIKFLELT 119

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             I T V+AR+   G   SL   C      
Sbjct: 120 NTIDTLVMARSMFPGARYSLDALCKRFKVD 149


>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
          Length = 854

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 23/153 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A +   E   +     +  +   L +  +D T   V H +  + I  ++  GI +    
Sbjct: 254 FAISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYV--CN 311

Query: 93  WICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
              T   +R   +   SL++    L+                 FC  + +          
Sbjct: 312 LFDTGQASRILQMDRNSLEHL---LHH----------------FCGVTANKEYQSADWRL 352

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                ++   Y + D      ++  +      E
Sbjct: 353 RPLPDEMIK-YAREDTHYLLYIYDLMRLRLVKE 384


>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
 gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
          Length = 377

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 78/294 (26%), Gaps = 45/294 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +  +A +       D +   L D     +  P  L + L
Sbjct: 26  FVAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LAELL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNF 118
            +  V+ V H    +  +  +  G     +    T + A    L  S+         L  
Sbjct: 73  ENSGVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGI 130

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G+       +   D                    Y   D     ELF  L 
Sbjct: 131 DLPK-----GETRSDWLQRPLSD----------------TQVSYAAEDAVHLAELFTVLR 169

Query: 179 PLSDGERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           P    ++  W+L+            ++   + +  +L  +   +    + +L     R++
Sbjct: 170 PRLSDDKYAWVLEDGAELVAALRREVEPATLYRDVKLAWKLAPQQLAVLRELCAWRERTA 229

Query: 236 RQTYALR-MYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGS 287
           R     R   L   +   +       L ++        +  +      +     
Sbjct: 230 RSRDVPRNRVLKEHSLWPIAKNQPSNLSALAKVEEMHPRTIRQDGEFLIQLIKR 283


>gi|229472341|gb|ACQ72685.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYTMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|262212377|gb|ACY35805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRELFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7]
 gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7]
          Length = 384

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 49/286 (17%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T       K+G+    +   + L       +PV L D +          
Sbjct: 41  LVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVALPDLSA-------FW 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++ + H+   +  +F    G          + + A   G+   L         
Sbjct: 84  SLLDNPNIIKLVHSCSEDLEVFA-HYGQR-QPTPLFDSQIAASLCGMGHGL--------- 132

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +   C G +       T        +    Y   DV    +L+ +L 
Sbjct: 133 ---------GYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLA 183

Query: 179 PLSDGERDL-WLLDQTINDRGYR-----IDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232
                +  L WL ++       R     +D   +  ++        +L    V     + 
Sbjct: 184 DKLKAQDRLGWLYEEGERMTEGRLAPPDMDTAYLR-VKNAFQLTENQLAYLKVLAKWRLE 242

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278
           ++  +  AL   +     I L      ++  +L  +++T+  K + 
Sbjct: 243 KALARDLALGFVIKDHGLIALAKKQPKSMSDLLKLNDLTEQEKRIH 288


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 65  TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNF 118
             + VAHN+ F+    ++     G+D      + T +L+          +L   C  L  
Sbjct: 358 DAVIVAHNAPFDIAFLRRHGPRCGLDWD-HPILDTVLLSAVLFGASETHTLDALCDRLGV 416

Query: 119 S 119
           +
Sbjct: 417 T 417


>gi|119622451|gb|EAX02046.1| polymerase (DNA directed), gamma, isoform CRA_b [Homo sapiens]
          Length = 1168

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 88/326 (26%), Gaps = 26/326 (7%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYTLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L Q     K+   +   +    + L  + +          +     L
Sbjct: 960  PFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE---------WLVRELNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L K   E       +   + A R              ++   L S 
Sbjct: 1011 PVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTES------EMFNKLESI 1064

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
                          ++ A      +  +       +VQ+ + D   ++   MK   +   
Sbjct: 1065 ATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG 645
                  +++HDE+     +   +   
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDRYRAA 1150


>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
 gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 87/303 (28%), Gaps = 44/303 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E        +     Y     + L   A+++    + D   +    + L +   +
Sbjct: 24  VAIDTE------FLRSFNDYY---PKLCLLQIAYEN-KQCVIDALAEGIDLTPLQEIFDN 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  V H+   +       L  +   +    T + A            C          
Sbjct: 74  TQIFKVFHDCRQDLDALS--LLFESLPRPIFDTQIAA----------MLCEYH------- 114

Query: 124 KMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
           +   G   L+ +F    ++  P+     +     +    Y   DV    +L+  L  +  
Sbjct: 115 ENSVGYSKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILRDILT 174

Query: 183 GERDLWLLDQTINDRGYRID------LDLVLKLQ--ELIAQERKKLDEDIVKLTDGIIRS 234
            +  L      + +    +D        ++  ++    + ++   +   +V+  + + R 
Sbjct: 175 SKGRLS---WYMEEMDCIVDSVSDNYTTILESMECYADLTEQEANIARSVVEWRERVARL 231

Query: 235 SRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291
                 + M    +  I      D S+ TL+  +    +  L   L      +       
Sbjct: 232 LNINRNIIMNARDVLNITKDFIADGSDSTLRKYVRELYLQDLPFSLTEIVENNKHIKQDV 291

Query: 292 LNT 294
            N 
Sbjct: 292 YNK 294


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 40/139 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLW-------------- 45
           M+ + ID ET + +      +     +   I         E V                 
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGKII--------EEVHHLIKPKEMRFMPINIG 52

Query: 46  ----------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKR 92
                     D  E   +   +  Y  +E  + +AHN+ F+  + +       I++PS +
Sbjct: 53  IHGIRPRMVQDELEFDKVWEKIKHYF-NEN-LVIAHNASFDISVLRNTLELYNIEMPSFQ 110

Query: 93  WICTSVLARTNGLPSSLKN 111
           +ICT  L++     S+L N
Sbjct: 111 YICTMKLSK--NFYSNLDN 127


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 25/145 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWA-YAEQAVIT-LCAYAWDDEPVKLWDRT---------- 48
           M  + ID ET + +      +     + + +     Y    + ++               
Sbjct: 1   MDYIAIDFETANEKRSSPCSIGIVVVKNSEVVEKIHYLIKPKEMRFMPINIGIHGIRPGM 60

Query: 49  -----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
                E   +   +  Y  +  V  +AHN+ F+  + ++      I+  S ++ICT  L+
Sbjct: 61  VENEPEFDEIWKRIKGYFDNGFV--IAHNASFDISVLRRTMELYNIEPVSFKYICTMKLS 118

Query: 101 ---RTNGLPSSLKNACLALNFSEHL 122
                    S L      L +    
Sbjct: 119 KNFYPQIENSKLNTVNRFLGYEFDH 143


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLAR 101
            D  E   + ++   ++ D   + VAHN+ F+        + +GI   +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKSWVGDA--IFVAHNASFDMGFIDTGYEHVGIGASTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|163736203|ref|ZP_02143622.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
 gi|161390073|gb|EDQ14423.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
          Length = 385

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    DE   L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAYPGAGDENAVLVDPLADGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    R+ETV+ V H +  +  +F   +   +  K    T V A   G          
Sbjct: 67  EPLYDLFRNETVVKVFHAARQDLEIF--WVDAQVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +   + K+           K S  +       ++          Y   DV   R+++
Sbjct: 118 QVGYETLVRKIV-----KQGLDKTSRFTDWSRRPLSDAQ------KTYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L            +
Sbjct: 167 EYLAAELKRTGRARWV 182


>gi|229472593|gb|ACQ72811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 9   EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 61

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 62  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 102

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 103 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 130

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 131 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 155

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +  + M       N  +     +  VHDE
Sbjct: 156 QGSAGCVAKQWMVHTHNAINLNQIEAYQLAFVHDE 190


>gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 204

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIET-----RSPQPL------------------PKVGVWAYAEQAVITLCAYA- 36
           M  + ID ET      S   L                      ++       I   +   
Sbjct: 1   MKCVAIDFETANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGISAKD 60

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRW 93
            +D+P           +  ++  +L       VAHN+ F+  +         I  P   +
Sbjct: 61  VEDKPEFY-------QLWDEIFPFLE--GSYLVAHNASFDMSVLCCILDVYKIPYPPLNY 111

Query: 94  ICTSVLARTN---GLPSSLKNACLALNFS 119
            CT  +A+      L  +L      L   
Sbjct: 112 FCTLAIAKRVWPGLLGYALNKISRYLEIE 140


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA 100
           D          +L  L D     + VAHN+ F+       ++  G+    +  + T +L+
Sbjct: 605 DMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFS-QPVLDTLLLS 663

Query: 101 RTNGL---PSSLKNACLALNF 118
                      L +    L  
Sbjct: 664 GVLHPNQESHQLDSIAERLGI 684


>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 226

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 31/147 (21%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITL-------CAYAWDDE--------PVKL 44
           M + +  D ET    PL    V   A    +              D E         V  
Sbjct: 1   MKRSILFDTETTGLDPLNGDRVIEIAAL-ELIGDLPSGRSFRVLIDPERDVPEEASRVHG 59

Query: 45  WDRTEQS------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGI-DIPSKRWI 94
           + R +         +  + L ++ D+    +AHN+ F+        +  G+ ++   R +
Sbjct: 60  FTRADLEGQPKFAQIADEFLAFIGDDE--LIAHNAAFDFGFLNAEFRRAGLPELAMTRMV 117

Query: 95  CTS-VL-ARTNGLPSSLKNACLALNFS 119
            T  +  AR  G+P+SL   C   +  
Sbjct: 118 DTLQIARARFPGMPNSLDALCRRFSID 144


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL-- 105
             +  +  ++   +  + VAHN+ F+        + +GI+   +  I T  L+R      
Sbjct: 493 EQVLKEFHEF--SKDCILVAHNASFDMGFLNTGYENVGIERTEQPVIDTLELSRMLHPQL 550

Query: 106 -PSSLKNACLALNF 118
               L       N 
Sbjct: 551 KSHRLNTLAKRYNV 564


>gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
 gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 41/160 (25%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGV-------------WAYA--------EQAVITLCA 34
           M ++ +D ET    P     + ++G                Y         E   +    
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINPGRGMPQEAFEVHGIG 60

Query: 35  YAWDD-------EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI- 86
               D         + L D+     + +  ++++ +     V HN+ F+       LG  
Sbjct: 61  PDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFVGNA--KLVIHNAAFDMKFLNAELGWL 118

Query: 87  DIPSKRW---ICTSVLAR--TNGLPSSLKNACLALNFSEH 121
            +P   W   I T  +AR    G P+SL   C        
Sbjct: 119 KLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNT 158


>gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 228

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 39/150 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------- 52
            K+ +D ET     +             +           +       +           
Sbjct: 5   RKVILDTETTGL-DMKNGDRVIEIGCVEVVDFRI---TGEIFHIYLNPEREISKEATRVH 60

Query: 53  ---------------MPSDLLQYLRDETVMCVAHNSLFERILF------KKTLGIDIPSK 91
                          +  D L+++    +  VAHN+ F+           +   + I  +
Sbjct: 61  GITFEQLADSPKFIDIADDFLKFIDSSEI--VAHNASFDIRFLNSELIRARQRRL-IKLE 117

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             I T  +AR    G P+SL   C     S
Sbjct: 118 NVIDTLAMARKIFPGSPASLDALCRRFRIS 147


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 44/189 (23%), Gaps = 38/189 (20%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-----------------------LW 45
           ET     +   G+ A     VI L A       +                          
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D    +    ++ +           VAHN+ F+        K  G+D P    I T  LA
Sbjct: 475 DMLTDAPEVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           R          L   C  L      +          G  L+            Y     +
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQLND 594

Query: 152 HVQAWQLFG 160
            +     + 
Sbjct: 595 SMGQGDAYK 603


>gi|116749133|ref|YP_845820.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698197|gb|ABK17385.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 973

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 33/176 (18%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-PVKLWDRTEQSAMPSDLLQYLRD 63
           F D+ET+      +VG W   +   +   + A   E P        ++ +P  + +    
Sbjct: 794 FFDLETQRLAD--EVGGW---QNKHLMKVSVAVLLETPPDTVHVFRENEVPELVKRLTEL 848

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSV--LARTNGLPSSLKNACLA-LNFS 119
           +  + V  N + F+  + K    +D+         +  +    G   SL +     L   
Sbjct: 849 D--LVVGFNIAQFDYAVLKAYTTVDLNRLPTFD-LLRDIHERLGFRLSLGHLAEKTLGRP 905

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +                                   W    EYCK DV  TR+LF+
Sbjct: 906 KIS--------------------DGVQAVEWYRQNRWDSLIEYCKMDVLLTRDLFR 941


>gi|229472227|gb|ACQ72628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 65/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA        +  +  G    V           DK+
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY------LARYEGGRYGDVLLNGDIHQENADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 67  -GISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|118089996|ref|XP_001235033.1| PREDICTED: Werner syndrome [Gallus gallus]
          Length = 1466

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 31/214 (14%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +     +   + A I L      +E   L+  +  S  P  L + L DET+  V     
Sbjct: 58  DIEWPPSYTKGKMAKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKV----- 112

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKAL 131
                     G+ I    W    ++         LK+        N      ++     L
Sbjct: 113 ----------GVGIEGDHWK---LMG---DFEVKLKSFVELADVANEKLKCKEVWSLNGL 156

Query: 132 IA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           +   F K  +      C         +    Y   D  A   ++++L  ++  +R L+  
Sbjct: 157 VKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAYAGFIIYQKLKTMNSIDRKLF-- 214

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                +R   +  D V +    +A+    L   I
Sbjct: 215 ----GERRDEVLSDDVKERLTSLAEGMSYLAAKI 244


>gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 743

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 33/180 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S++ +D+E              Y+ Q    L   +  +E   + D  +  +    L    
Sbjct: 253 SEIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVF 301

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + +++ V H +  +    +K     +    +  T V  +T  +P SL            
Sbjct: 302 LNPSILKVLHGAREDIRWLQK--DFSLYVVNFFDTGVALQTLHMPHSLAF---------- 349

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                     +  FC+  ++             + +    Y ++D      ++ RL  L 
Sbjct: 350 ---------AVDHFCQVKLNKKYQTADWRVRPLSAE-MVHYARQDTHFLLYVYDRLKALL 399


>gi|229472377|gb|ACQ72703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 9/143 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     E  
Sbjct: 64  DKIGMSRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKDKEIRQAYMDAIPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTACE 504
              ++ +  E        G  C 
Sbjct: 124 VTAVKSKA-ESGYIQLCDGRRCP 145


>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum]
          Length = 743

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 33/180 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S++ +D+E              Y+ Q    L   +  +E   + D  +  +    L    
Sbjct: 253 SEIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVF 301

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + +++ V H +  +    +K     +    +  T V  +T  +P SL            
Sbjct: 302 LNPSILKVLHGAREDIRWLQK--DFSLYVVNFFDTGVALQTLHMPHSLAF---------- 349

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                     +  FC+  ++             + +    Y ++D      ++ RL  L 
Sbjct: 350 ---------AVDHFCQVKLNKKYQTADWRVRPLSAE-MVHYARQDTHFLLYVYDRLKALL 399


>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
          Length = 737

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   +   +   + D          L +   +  +  V H +  + I  ++ LG+ I 
Sbjct: 251 VCLMQISTRTQD-YIVDTIALRDDLKMLNEVFTNPLITKVFHGAFMDIIWLQRDLGLYI- 308

Query: 90  SKRWICTSVLARTNGLP-SSLKNACLALNFSEHLTKM 125
                 T   ++  GLP  SL          +   K 
Sbjct: 309 -VSLFDTFHASKALGLPKHSLAYLLEKYANFKTSKKY 344


>gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 743

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 33/180 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S++ +D+E              Y+ Q    L   +  +E   + D  +  +    L    
Sbjct: 253 SEIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVF 301

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + +++ V H +  +    +K     +    +  T V  +T  +P SL            
Sbjct: 302 LNPSILKVFHGAREDIRWLQK--DFSLYVVNFFDTGVALQTLHMPYSLAF---------- 349

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                     +  FC+  ++             + +    Y ++D      +  RL  L 
Sbjct: 350 ---------AVDHFCQVKLNKKYQTADWRVRPLSAE-MVHYARQDTHFLLYVHDRLKALL 399


>gi|163741269|ref|ZP_02148661.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
 gi|161385622|gb|EDQ09999.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
          Length = 385

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    DE   L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAYPGAGDENAVLVDPLADGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    R+ETV+ V H +  +  +F   +   +  K    T V A   G          
Sbjct: 67  EPLYDLFRNETVVKVFHAARQDLEIF--WVDAQVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +   + K+           K S  +       ++          Y   DV   R+++
Sbjct: 118 QVGYETLVRKIV-----KQGLDKTSRFTDWSRRPLSDAQ------KTYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L            +
Sbjct: 167 EYLAAELKRTGRARWV 182


>gi|262212403|gb|ACY35818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 39/148 (26%)

Query: 3   KLFIDIETRSPQP------------------------LPKVGVWAYAEQAVITLCAYAWD 38
            + +D ET    P                        L K         + IT       
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEML 417

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
           +             +  + L +L +   + VAHN+ F+        KK +G+D   + +I
Sbjct: 418 ENK------RSIEEVLPEFLGFLENS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYI 468

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSE 120
            T  LA++       SL +    L    
Sbjct: 469 DTLALAKSLLKMRSYSLDSVVEKLGLGP 496


>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
 gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
          Length = 382

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 49/192 (25%), Gaps = 32/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A  +E   + D           L  L 
Sbjct: 22  FITVDTE------FMRETTYW----PKLCLIQ-AASEEHAGIIDPLSPDLDLKPFLDLLT 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  ++ V H    +  +F     +         T V A   G                  
Sbjct: 71  DPAILKVFHACRQDVEIFNN---LGAMPAPVFDTQVAAMAAGFG---DQVAYD------- 117

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                  +L+ +  K  ID        +    + Q    Y   DV     L+ +L+    
Sbjct: 118 -------SLVRQVIKVDIDKGSRFTDWSRRPLSEQQLQ-YALGDVTHLARLYPKLVEKLK 169

Query: 183 GERDLWLLDQTI 194
            +     +   +
Sbjct: 170 AQNRYEWVAAEM 181


>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
          Length = 386

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E        +     Y     + L   A+      + D  ++    S L +   D
Sbjct: 28  LAIDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E +  V H+   +     +        +    T          +S+   C   + S   +
Sbjct: 78  EGIYKVFHDCRQDLDALSQRF--TRLPRPIFDT--------QTASM--LCEYHDNSVGYS 125

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           K+ E      +F    ++   +     +H    +    Y   DV    EL++ L+ +   
Sbjct: 126 KLVE------QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTA 179

Query: 184 ERDLWLLDQTIND 196
           +  L    + + +
Sbjct: 180 KGRLTWFLEEMEN 192


>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
          Length = 1498

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 31/214 (14%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +     +   + A I L      +E   L+  +  S  P  L + L DET+  V     
Sbjct: 92  DIEWPPSYTKGKMAKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKV----- 146

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKAL 131
                     G+ I    W    ++         LK+        N      ++     L
Sbjct: 147 ----------GVGIEGDHWK---LMG---DFEVKLKSFVELADVANEKLKCKEVWSLNGL 190

Query: 132 IA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           +   F K  +      C         +    Y   D  A   ++++L  ++  +R L+  
Sbjct: 191 VKHLFGKQLLKDKSIRCGNWEKFPLDEERKLYAATDAYAGFIIYQKLKNMNSIDRKLF-- 248

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                +R   +  D V +    +A+    L   I
Sbjct: 249 ----GERRDEVLSDDVKERLTSLAEGMSYLAAKI 278


>gi|229472259|gb|ACQ72644.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472389|gb|ACQ72709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472463|gb|ACQ72746.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472553|gb|ACQ72791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472573|gb|ACQ72801.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472587|gb|ACQ72808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472597|gb|ACQ72813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 44/189 (23%), Gaps = 38/189 (20%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-----------------------LW 45
           ET     +   G+ A     VI L A       +                          
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D    +    ++ +           VAHN+ F+        K  G+D P    I T  LA
Sbjct: 475 DMLTDAPEVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           R          L   C  L      +          G  L+            Y     +
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQLND 594

Query: 152 HVQAWQLFG 160
            +     + 
Sbjct: 595 SMGQGDAYK 603


>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 737

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 32/180 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E            +   +     L   +  D    + D     +    L +  
Sbjct: 270 KEIAIDLE---------HHSYRSFQGFTCLL-QISTRDTD-YVIDTIALRSKLEGLNKIF 318

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  + +  ++   + +       T    +      SL +          
Sbjct: 319 TNPNIVKVFHGADLDILWLQR--DLSLYVVNMFDTHQAGKLLNYS-SL-SLAY------- 367

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L+  FCK                   +L   Y + D      ++  L  + 
Sbjct: 368 ---------LMFHFCKIVAQKHFQMADWRIRPLPDELLA-YAREDTHYLLYIYDNLRNIL 417


>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
 gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
          Length = 552

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 24/153 (15%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   +  D    L D  E       L +   +  ++ V H +  +    ++  GI + 
Sbjct: 288 VCLMQISTRDHD-FLVDTLELRNDLHLLNESFTNPNILKVFHGADMDVGWLQRDFGIYV- 345

Query: 90  SKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                 T   +R   L   SL                      + +FC  + D       
Sbjct: 346 -VNMFDTGQASRVLALERFSLAFL-------------------LKKFCGVTADKQYQLAD 385

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                   +    Y + D      +  RL    
Sbjct: 386 WRIRPLP-EEMIRYAREDTHYLLYIHDRLRNEL 417


>gi|83772845|dbj|BAE62973.1| unnamed protein product [Aspergillus oryzae]
          Length = 1017

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 62/295 (21%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 693 GSELKAMIKAPPGYVFVGADVDSQELWIAS-LIGDAQFQIHGGNAIGFMTLEGSKAAGTD 751

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   ++       + +               
Sbjct: 752 MHSRTAKILGISRNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQ----------- 800

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                      +      ++         +         G      +  E FA   +   
Sbjct: 801 -----------EVATKLYQETKGARTTRRILSDSPFWRGGTESFVFNKLEEFADQERPRT 849

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                 +              +                                      
Sbjct: 850 PTLGAGITEALMRRFINRGSFMTSR----------------------------------- 874

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 875 -INWAIQSSGVDYLHLLIIAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAA 928


>gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 211

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 25/141 (17%)

Query: 1   MSKLFIDIETR-----SPQPL----PKVGVWAYAEQAVIT-------LCAYAWDD-EPVK 43
           M  + ID ET      SP  +       GV    E   I            A+    P +
Sbjct: 8   MHAVAIDFETANEQRASPCSIGLAWINDGVIESVEHHYIRPPGMRFASFNIAFHGIGPEQ 67

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICT-SVL 99
           + D  E  A+ + +   L   TV+  AHN+ F+  + +      G+  P   ++CT  + 
Sbjct: 68  VEDAEEFPAVLAAIAPRLEGRTVL--AHNAAFDVSVIRNTCDHYGLTYPEFDYLCTVKLA 125

Query: 100 --ARTNGLPSSLKNACLALNF 118
             +        L N C  L  
Sbjct: 126 QISWPEFPSHKLNNVCAELGV 146


>gi|262342093|gb|ACY54557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 36/142 (25%), Gaps = 13/142 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    A+ G+ +V ADL+GIE R+LA          A  +             +      
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHY-------LARYDEGRYASILLHGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R   K +  A  Y  G              L +     K     + +  A      
Sbjct: 66  IGISRRQVKTVTYAFLYGAGDSKL---GRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTAC 503
                    E    +      C
Sbjct: 123 LVTAVKSKAESGYINLCDSRRC 144


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 22/131 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCA-YAWDDEPVKLWDRTEQ 50
            +  D ET   +    +G+  Y                +     +A     +   D   +
Sbjct: 5   FVVFDFETARGKNPCSLGMVEYKNGKKYREFYELINPEVAYFNPFAIQIHGITYEDVQHE 64

Query: 51  ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN- 103
              S +   +L ++       VAHN+ F+  +   +    GID+P     CT   AR   
Sbjct: 65  RNFSELWDAMLPFIE--GKTLVAHNAKFDNAVLLYSLQRYGIDVPPYASFCTLQRARRLV 122

Query: 104 -GLPSSLKNAC 113
                 L +  
Sbjct: 123 ALPSYKLSSLA 133


>gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654]
 gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654]
          Length = 387

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 66/263 (25%), Gaps = 53/263 (20%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPV--KLWDRTEQSAM 53
            + +D E     T                   + L   A   DD+ V   L D       
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAVMGDDDEVDAVLVDPLADGLS 66

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              L +  RDE V+ V H +  +  +F   +   +       T V A   G         
Sbjct: 67  LEPLYELFRDEGVVKVFHAARQDLEIF--YVDAGLIPSPLFDTQVAAMVCGFG------- 117

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                 +   +    K   A+  K S  +        +         +Y   DV   R +
Sbjct: 118 -----DQAGYETLVRKIAKAQLDKSSRFTDWSRRPLTDAQ------KKYAIGDVTHLRVI 166

Query: 174 FKRLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL-----DEDI 224
           ++ L    +     +     L    +   Y +D D   K  +      + L         
Sbjct: 167 YEFLKAQLEETGRAKWVKEELSVLTDPDTYTVDPDEAWKRVKTRTNSARFLAIVRELARF 226

Query: 225 VKLTDGIIRSSRQTYALRMYLFL 247
            +         R        L  
Sbjct: 227 RETYAQERNIPRSRVYKDDALME 249


>gi|262342321|gb|ACY54671.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA        +  +  G    V           D
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGGIHQENAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           K+    R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 65  KI-GISRRLVKTVTYAFLYGAGDKKIGLSYDPQPSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|194755160|ref|XP_001959860.1| GF11823 [Drosophila ananassae]
 gi|190621158|gb|EDV36682.1| GF11823 [Drosophila ananassae]
          Length = 1018

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 75/266 (28%), Gaps = 31/266 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  E V+ V H+   +        G
Sbjct: 585 GEITLIEIGTTRGEAFLFDVQSCPAMITDGGLKTVLEHEQVIKVIHDCRNDAANLYLQFG 644

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +     I R
Sbjct: 645 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL--KQIYR 700

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT--RELFKRLIPLSDGERDLWLLDQ 192
             +      P                 Y   DV      +LF  L      E  +   + 
Sbjct: 701 RDQKFWAKRPLTRE----------MMLYAAGDVLVLIHDQLFGNLARQIKPENKVLFSEL 750

Query: 193 TINDRGYRIDLDLVL--KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
                  +I  + V   K Q  ++ E   L + + + +  I+ S+R+   LR        
Sbjct: 751 CTEQILMQIKPNEVKIRKKQRKVSTEVSDLKQKLAQTSKSIVLSNREIRLLRYMDLTEDE 810

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKD 276
            + +       K +    +    +KD
Sbjct: 811 KERLKGYYKVAKKLEKMESAGNPSKD 836


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G+D P    I T  
Sbjct: 473 TDDMLTDAPEVGEVFKKFEAWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583]
 gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583]
          Length = 391

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 41/167 (24%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  +    L D              + D+ ++ V H +  +  +    LG  
Sbjct: 37  PQLCLIQLASPNSTA-LIDPMVPDIDLQPFFDLMIDKNIVKVFHAARQDIEII-YHLG-R 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T +     G                           I   C G         
Sbjct: 94  IIPFPLFDTQIAGAICGFG------------------DSISYDQIVYHCTGQHLDKSSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           T  +     +    Y   DV   R+++  L    +  +    +D  +
Sbjct: 136 TDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWMDGEM 182


>gi|229472511|gb|ACQ72770.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472585|gb|ACQ72807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 60/275 (21%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE------------- 132

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                           +I L   RR                            K    ++
Sbjct: 133 --------------SGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  +HDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|301605305|ref|XP_002932281.1| PREDICTED: DNA polymerase subunit gamma-1-like [Xenopus (Silurana)
           tropicalis]
          Length = 1197

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 71/280 (25%), Gaps = 51/280 (18%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNF 118
               + V HN  F+R   K+   I     R++ T  +        G   +L         
Sbjct: 235 WTERLVVGHNISFDRAHIKEQYLIKGSKMRFMDTMSMHMAISGLTGFQRTL-WMASKYGK 293

Query: 119 SE--HLTKMEEGKALIARFCKGSIDSPP------------------------------YD 146
            +     K    K                                               
Sbjct: 294 KKGLQEVKQHIKKTRSKFDGSPISSWDWVNISSINNLADVHALYVGGPPLEKEARELFVK 353

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDL 203
            + ++    +Q    YC  DV+AT E+F+   PL        +    + + G     ++ 
Sbjct: 354 GSISDIRTEFQELMRYCALDVQATHEIFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQ 413

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           +   +  +      ++L +++ K                  L      +   +    L+ 
Sbjct: 414 NW-ERYLDEAQTSYEELQKEMKKSLM------NLANDACQLLTEDAYKEDPWL--WDLEW 464

Query: 264 ILSHSNITQLAKDLILNRLASSGSAI--LKLNTLSEAVSS 301
            +      +        RL  +  ++    +  L+E    
Sbjct: 465 DIQEFKQKKTKISKKQKRLKEAQESVGNKFIEDLNEDTGP 504



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 75/286 (26%), Gaps = 28/286 (9%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDWKIKAFANGEDIYVTT 412
                  +++ +    G  ++ AD+   E  + A       AG                +T
Sbjct: 835  DRVGSELKAMVQVPPGYHIIGADVDSQELWIAAILGEAHFAGIHGCTAFGWMTLQGKKST 894

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                 +     V    R   KV      Y  G    + +       L Q     K+   +
Sbjct: 895  GTDLHSKTASTV-GISREHAKVFNYGRIYGAGQAFAERLLMQFNHRLTQEQAAEKAKQMY 953

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +    + L  + +          +     +  +        +  L K   E  A   
Sbjct: 954  AVTKGIRRYILSKEGE---------WLVEELGIPVERGEENSVSLQDLRKIQKEASAKSR 1004

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            ++   +S  R         +   +   I +  S +          +    A         
Sbjct: 1005 RKWNLVS--RRIWTGGTESQMFNKLETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSR 1062

Query: 593  YGGKLTENIVQAISRD---ILCEGMK---NATKNGYDIVLTVHDEI 632
                    +VQ+ + D   ++   MK    A        +++HDE+
Sbjct: 1063 -----INWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEV 1103


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 40/153 (26%)

Query: 2   SKLFIDIETRSPQP-----LPKVGV---------------------WAYAEQAVITLCAY 35
            ++ +D ET    P     L ++G                         AE   +   + 
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDPLRDMPAEAEKVHGLSS 62

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
           A+     K         +    ++++ D   + VAHN+ F+R       +K     I   
Sbjct: 63  AFLTGKPKFH------EIADRFVEFVGDS--VVVAHNAAFDRQFVNFELEKCGRAPIRED 114

Query: 92  RWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
           RW+ T  +A  R  G+ +SL   C     S   
Sbjct: 115 RWVDTLAMAKKRFPGMYNSLDALCKRFKISLES 147


>gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
 gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
          Length = 387

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 48/200 (24%), Gaps = 38/200 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E        +     Y     + L   A+  E   + D   +    S L    
Sbjct: 22  KFIAVDTE------FVRSSSEYY---PKLCLIQIAYGKEQ-FVIDVLAKDMDLSVLGHIF 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-----RTNGLPSSLKNACLAL 116
            +E+++ V H+   +                   T + A       N +  S        
Sbjct: 72  YNESIIKVFHDCRQDIDALL--TKFPEIPSPIFDTQIAAMFCCCYDNAVGYS-------- 121

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                       K +                  A    +      Y   DV    EL++ 
Sbjct: 122 ------------KLVEQFLGISLDKLSLKRSNWALRPLSADKIQ-YALNDVIYLYELYQI 168

Query: 177 LIPLSDGERDLWLLDQTIND 196
           L         L    + +N+
Sbjct: 169 LYNNLLDAGKLPWFLEEMNN 188


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 39/148 (26%)

Query: 3   KLFIDIETRSPQP------------------------LPKVGVWAYAEQAVITLCAYAWD 38
            + +D ET    P                        L K         + IT       
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEML 417

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
           +             +  + L +L +   + VAHN+ F+        KK +G+D   + +I
Sbjct: 418 ENK------RSIEEVLPEFLGFLENS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYI 468

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSE 120
            T  LA++       SL +    L    
Sbjct: 469 DTLALAKSLLKMRSYSLDSVVEKLGLGP 496


>gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM]
 gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM]
          Length = 385

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 48/211 (22%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW----DDEPVKLWDRTEQSAM 53
            + +D E     T                   + L   A     D   V +    E  ++
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAMPGEDDAGAVLVDPLAEGLSL 66

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              L +  RDE V+ V H +  +  +F   +   +  +    T V A   G         
Sbjct: 67  -EPLYELFRDENVVKVFHAARQDLEIF--YVDAGLIPQPLFDTQVAAMVCGF-------G 116

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             + +            L+ R  K  +D        +    + +   +Y   DV   R +
Sbjct: 117 EQVGYET----------LVRRIAKEQLDKSSRFTDWSRRPLS-EAQKKYALGDVTHLRRI 165

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           ++ L    +       +     + G  +D  
Sbjct: 166 YEYLAAELEKSGRDAWVK---EELGTLMDPA 193


>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
 gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P          E   + L                       A A  
Sbjct: 1   MRQIVLDTETTGLNP---RSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG------IDIPSK 91
               +   D+ + + + ++   Y+    V+   HN+ F+       L             
Sbjct: 58  GLTTEFLSDKPKFAEIAAEFRDYISGADVII--HNAPFDIGFLDAELKRVNTPSFKEHVG 115

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFS 119
             I T V A+        SL   C     S
Sbjct: 116 EVIDTLVQAKEMHPGKRNSLDALCDRYGIS 145


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 42/156 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-----------EQA---------------VITLCA 34
           M ++F+D ET          V   A           +                  +   +
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPDREIDQGAQEVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPS--- 90
             +  +     D         +L+ ++ D     + HN+ F+     +  G I+      
Sbjct: 61  LEFLQDKPHFADIAN------ELIAFIADSE--LIMHNAPFDVGFLNREFGLIEQKPVEA 112

Query: 91  --KRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
              +   T  +A+    G  +SL   C         
Sbjct: 113 ITAKITDTLKIAKEMRPGQRNSLDALCKHYGIDNSK 148


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 52  AMPSDLLQYL-RDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL--ARTNG 104
            +  DLL +  RD     +AHN+ F+         +     +   R I T V+  AR  G
Sbjct: 73  DIVEDLLAFFGRDP---LIAHNAPFDFNFLNAEFARLGKPKLDPARMIDTLVMAKARFPG 129

Query: 105 LPSSLKNACLALNFS 119
           +P+SL   C   +  
Sbjct: 130 MPNSLDALCRRFSID 144


>gi|262212353|gb|ACY35793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R    A+ G+ +V ADL+GIE R+LA        +  +  G    +        
Sbjct: 7   PSGPEFRRLFTATPGQVMVGADLSGIELRMLAHY------LARYDGGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G              L       K       +  A
Sbjct: 61  VNADKI-GITRKLVKNVTYAFLYGAGDVKI---GLTYDKQLPPNKAKKKGAEIRAAYVAA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          +      + G  
Sbjct: 117 IPGPDDLLTAIKVAGDRGFVKAIDGRK 143


>gi|229472239|gb|ACQ72634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNSDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
 gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
          Length = 384

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D   +          + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMA 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           DE+ + V H++  +  +    L   +  + +  T V A   G   S
Sbjct: 72  DESTVKVFHSARQDLEII--WLLGGLLPQPFFDTQVAAMVCGYGDS 115


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 65  TVMCVAHNSLFERILFKKTLG-IDIPS-KRWICTSVLARTN---GLPSSLKNACLALNFS 119
             + VAHN+ F+    ++    +++      + T +L+          +L   C  L   
Sbjct: 358 DAVIVAHNAPFDMAFLRRHAKRMEVEWDHPILDTVLLSAVLFGASETHTLDALCDRLGIE 417


>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
 gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
          Length = 393

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L           +     +   P    + L 
Sbjct: 46  YLALDTE-----FMRVDTFYPAAG-----LVQVGDGRREWLIDPLLVRDWGP--FAELLE 93

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 94  DPRVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 138

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 139 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 191

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 192 LSEEKRAWLL 201


>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
 gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
          Length = 339

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 58/216 (26%), Gaps = 43/216 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E  S        +  + E   + L       +   ++D          L  Y  D
Sbjct: 78  ISLDTEYDS--------MHYFRE--KLCLVQVR-ASKRTYVFDPFNG-IDLQFLRPYFAD 125

Query: 64  ETVMCVAH---NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             ++ V H   N   +  + K+  G +        T   A   G           L  S 
Sbjct: 126 PRLLKVTHAGDN---DIRILKRDYGFEFR--NIFDTHRAAHMLG--------SQYLALSS 172

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
            +                   +     ++       +    Y  +D     +L++ L   
Sbjct: 173 IIE---------QYLGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEK 223

Query: 181 S------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                  +  R ++     ++ R   +DL    ++ 
Sbjct: 224 LSLKGMQERARKVFENVAAVSWREKTLDLLGHRRIS 259


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL---------CAYAWDDE-----PVKLWD 46
           + ++ +D ET    P          E   I +           +  + E           
Sbjct: 4   LREIILDTETTGLDPQQG---HRIVEIGAIEMVNKVLTGKHFHFYINPERDMPFEAYKIH 60

Query: 47  RTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPS 90
                          + +D L+++ D     + HN+ F+           K+T    +  
Sbjct: 61  GISGEFLKDKPLFKTIANDFLKFIADS--TLIIHNAPFDIKFLNHELSLLKRTEIKFLEL 118

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V+AR    G   SL   C      
Sbjct: 119 TNTIDTLVMARNMFPGARYSLDALCKRFKVD 149


>gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 377

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 59/238 (24%), Gaps = 25/238 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  V+ V H    +  +  +  G          T + A    L  S+      L
Sbjct: 68  LSALLENPDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRL 123

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                   + +G+       +                   +    Y   D     ELF  
Sbjct: 124 VQEVLDIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFAI 167

Query: 177 LIPLSDGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L P    ++  WLLD       +    +D  ++    +      R +L            
Sbjct: 168 LRPRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWRER 227

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
            +  +       +   +   L       L ++        +  +      L    +A 
Sbjct: 228 EARARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|262212359|gb|ACY35796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|224369976|ref|YP_002604140.1| ATP-dependent DEAD/DEAH box helicase family protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692693|gb|ACN15976.1| ATP-dependent DEAD/DEAH box helicase family protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 978

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 45/180 (25%)

Query: 6   IDIETR-SPQPLPKVGVWAYAEQAVITLCAYAW------DDEPVKLWDRTEQSAMPSDLL 58
           +DIETR S Q +   G      +A +   + A       +D  V L    +   +  DL 
Sbjct: 808 LDIETRRSAQEVGGWG------RAHLMGVSCAVLFDSGINDFRVYL--EADVETLVQDLQ 859

Query: 59  QYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL--ARTNGLPSSLKNACL- 114
            +      + +  N   F+  +    +  D+ +   +   ++      G   SL      
Sbjct: 860 AF-----DLVIGFNIKGFDYKVLSGLVSFDLTTIPTLD-MLVKVHERLGYRLSLDALARC 913

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L                      S  +                  EYCK+DV+ TR+L+
Sbjct: 914 TLG--------------------TSKSADGLAALEWWKQGEIHRIIEYCKQDVKVTRDLY 953


>gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
          Length = 387

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 48/200 (24%), Gaps = 38/200 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E        +     Y     + L   A+  E   + D   +    S L    
Sbjct: 22  KFIAVDTE------FVRSSSEYY---PKLCLIQIAYGKEQ-FVIDVLAKDMDLSVLGHIF 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-----RTNGLPSSLKNACLAL 116
            +E+++ V H+   +                   T + A       N +  S        
Sbjct: 72  YNESIIKVFHDCRQDIDALL--TKFPEIPSPIFDTQIAAMFCCCYDNAVGYS-------- 121

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                       K +                  A    +      Y   DV    EL++ 
Sbjct: 122 ------------KLVEQFLGISLDKLSLKRSNWALRPLSADKIQ-YALNDVIYLYELYQI 168

Query: 177 LIPLSDGERDLWLLDQTIND 196
           L         L    + +N+
Sbjct: 169 LYNNLLDAGKLPWFLEEMNN 188


>gi|326427333|gb|EGD72903.1| hypothetical protein PTSG_04632 [Salpingoeca sp. ATCC 50818]
          Length = 1060

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/455 (9%), Positives = 88/455 (19%), Gaps = 99/455 (21%)

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLILNRLASSGS 287
              +    +         +   D  +        K  ++     +L           S  
Sbjct: 583 HDWKSPNDMMHLTHAYFKLPHKDGDKARCGSPFAKEYMALVEDGRLKSHSEEAAQVLSAM 642

Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347
           +       S A +         +    S    WS     P  LP    +     +     
Sbjct: 643 SACSY--WSSARNRILSQFVVWEDLVGSSMREWSTDRITPPPLPSTATTTNGADEQDGDG 700

Query: 348 NRGETI-------------------------------ADPLGLASDCVRSCIIASNGKKL 376
             G                                            +++ + A  G K 
Sbjct: 701 KNGNAAAADTRGVILPFITTMGTISRRARESTWLTASNPKPNRIGSELKAMVRAPPGCKF 760

Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436
           V AD+   E  + A          A   G                   S       +++ 
Sbjct: 761 VGADVDSQELWIAAL------LGDARFTGIHGSTALGWMTLQGSKKDKSDMHTKTAEIVG 814

Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496
                  G           G         +   +     ++A++    + D+        
Sbjct: 815 CHT----GGSKIFNYGRIYGAGRPFAKGLIMQFNPTIKEDEAKTLANELYDKTKGQMTSL 870

Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556
              G                      ++      +       +                 
Sbjct: 871 GYSG------------------GSESEMFNQLEEIANRKVPKT----------------P 896

Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
            +   L +  +  Y            A     +   Y       +VQ+ + D   ++   
Sbjct: 897 FLGFRLTAGLQPRYL-----------AKKGRKKATDYLPTRINWVVQSSAVDYLHLMLVS 945

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +T+HDE+     D       
Sbjct: 946 MKYFITQYDMKARLCITIHDEVRYIVADEDVARFA 980


>gi|262342103|gb|ACY54562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342129|gb|ACY54575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G   V ADLAGIE R+ A          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVTVGADLAGIELRMPAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
 gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
          Length = 358

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 62/246 (25%), Gaps = 26/246 (10%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A   + + +        M   L  +L DE+++ V H++  + + FK   G  
Sbjct: 36  PQLALVQMAVGQDILLIDPLIPG--MAEALAPWLADESIIKVMHSASEDLVAFKWACG-- 91

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +  +    T + A   G+   +                  G   +     G   +     
Sbjct: 92  VLPRPLFDTQIGASLAGIGGGM------------------GYQKLVAEITGVALAKGETR 133

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI--DLDL 205
           +        +   +Y   DVE    +   +            L          +  D D 
Sbjct: 134 SDWMRRPLSESQLQYAADDVEHLFAMHDAIDAKLQALGRQQWLHDDGERLLASVANDEDR 193

Query: 206 VLKLQELIAQERKKLDE--DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
              L    AQ      +   +  L    +++          L       L         +
Sbjct: 194 WPHLSMRSAQFLDAAAQRRLLRLLRWRDMQARSSDRPRSWILDNELAATLARTPPADADA 253

Query: 264 ILSHSN 269
           +     
Sbjct: 254 LAKLFE 259


>gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 951

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 29/121 (23%)

Query: 1   MSKLFIDIETR---SPQPLPKVGVWAYAEQ------------------AVITLCAYAWDD 39
           M    +D ET    S   + +VG+                          IT       D
Sbjct: 1   MKYAVLDFETTGNQSSDDIIQVGLAIIEPDRSISQVYRSFVKPGVPIPPFITGLT-GITD 59

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
           E VK  D  E   +  +++  L D  V+ V HN  F+    +  L   G    + R + T
Sbjct: 60  EDVK--DAPELDEVMMEMVPLLND--VVLVGHNVAFDFNYLQSALDKTGYLPFTGRILDT 115

Query: 97  S 97
            
Sbjct: 116 M 116


>gi|229472263|gb|ACQ72646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     E +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSAKAKKKGEEIREAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E      + G  
Sbjct: 117 IDGLDKLLAAIKTASERGFIKAIDGRK 143


>gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 853

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYL 61
           L +D E      L   G         +TL   A     V L+D      +  +  L   L
Sbjct: 551 LALDAE---GVNLGPRGP--------LTLLQLATAAGEVFLFDVQSTPQLFDEGKLKDIL 599

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
             +T++ V H+   +        GI +       T     T 
Sbjct: 600 ESQTIVKVVHDCRNDSAALFYQFGIRLQ--NVFDTQAAHATL 639


>gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 190

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 53  MPSDL-LQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPS 107
           +P +L +  L       + VAH++ F+     + L   +    ++CT VL++    G  +
Sbjct: 56  IPEELAIPLLACFMSGSIVVAHHAPFDLSFLARYL---VEPSSFVCTRVLSKLVEPGESA 112

Query: 108 SLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDC 147
           SL                     E    I +  K   D+     
Sbjct: 113 SLAAVAERRGIELTGHHRAMADVEATVKIFQQLKAEADALGIRY 156


>gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1]
 gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1]
          Length = 384

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D   +          + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMA 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           DE+ + V H++  +  +    L   +  + +  T V A   G   S
Sbjct: 72  DESTVKVFHSARQDLEII--WLLGGLLPQPFFDTQVAAMVCGYGDS 115


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 40/153 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGV--------------------------WAYAEQAVITLCAY 35
            ++ +D ET    P     +                             AE   +   + 
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDPLRDMPAEAEKVHGLSS 62

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
           A+     K         +    L ++ D   + VAHN+ F+R       +K     I  +
Sbjct: 63  AFLTGKPKFH------EIADRFLDFVGDS--VVVAHNAAFDRQFVNFELEKCGKAPIHEE 114

Query: 92  RWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
           RW+ T  +A  R  G+ +SL   C     S   
Sbjct: 115 RWVDTLAMAKKRFPGMYNSLDALCKRFKISLES 147


>gi|240139668|ref|YP_002964145.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
 gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
          Length = 384

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D   +          + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMA 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           DE+ + V H++  +  +    L   +  + +  T V A   G   S
Sbjct: 72  DESTVKVFHSARQDLEII--WLLGGLLPQPFFDTQVAAMVCGYGDS 115


>gi|229472221|gb|ACQ72625.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472277|gb|ACQ72653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472293|gb|ACQ72661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472375|gb|ACQ72702.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472445|gb|ACQ72737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472465|gb|ACQ72747.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472501|gb|ACQ72765.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472515|gb|ACQ72772.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472547|gb|ACQ72788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472579|gb|ACQ72804.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
 gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
          Length = 235

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA---EQAVITLCAYAWD--------DEPVKLWDRTE 49
           M ++  D ET          +           +T C +            + V       
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 50  QSA---------MPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
                       +  + L+++       +AHN+ F+        K+     I     I T
Sbjct: 61  NERLKNEKSFSDIVDEFLEFIN--GATMIAHNASFDIGFINAELKRVNKPLISVDNIIDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             +AR      P+SL   C      
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGID 143


>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
 gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
          Length = 374

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L       +   +     Q   P    + L 
Sbjct: 27  YLALDTE-----FMRVDTSYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 75  DERVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 119

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 120 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 173 LSEEKRAWLL 182


>gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 377

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 59/238 (24%), Gaps = 25/238 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   L +  V+ V H    +  +  +  G          T + A    L  S+      L
Sbjct: 68  LSALLENPAVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRL 123

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                   + +G+       +                   +    Y   D     ELF  
Sbjct: 124 VQEVLNIDLPKGETRSDWLQRPLS----------------ETQISYAAEDAVHLAELFAI 167

Query: 177 LIPLSDGERDLWLLDQTIN---DRGYRIDL-DLVLKLQELIAQERKKLDEDIVKLTDGII 232
           L P    ++  WLLD       +    +D  ++    +      R +L            
Sbjct: 168 LRPRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWRER 227

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAI 289
            +  +       +   +   L       L ++        +  +      L    +A 
Sbjct: 228 EARARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B]
 gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B]
          Length = 371

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 42/195 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T                 A + L    +D   + L D  +   + S 
Sbjct: 24  RLLVLDTEFVRTRTYY---------------AKLGLIQV-YDGNTLALIDPLDIQDL-SG 66

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L +  ++ + H+   +  +F +     +       + + A  +G+   L       
Sbjct: 67  FWALLTNPNILKLVHSCSEDLEVFARYG--KVQPTPLFDSQIAAALSGMGHGL------- 117

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G         T            +Y   DV    +L+ +
Sbjct: 118 -----------GYAKLVEECLGQTLDKGESRTDWIKRPLTDAQLQYAANDVFYLYQLYPQ 166

Query: 177 LIPLSDGERDLWLLD 191
           L            + 
Sbjct: 167 LEQKLKTLGRFDWVL 181


>gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219]
 gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219]
          Length = 186

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 31/184 (16%)

Query: 2   SKLFIDIETRSPQ--PLPKVGVWA----YAEQAVITLCAYAWDDEPVKLW---------- 45
             + +D+ET S     +  +G+        E+A  +L   A +    + +          
Sbjct: 3   RVVAVDVETASSDHRSMCAIGLSVLENGVLEEAFYSLIKPAANANHFEYFNTKVHGIHPK 62

Query: 46  DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVL 99
           D  +   +P     +   L     + VAHN++F+  + K      G  +P   +  +  L
Sbjct: 63  DVQDAPTLPEVYPTIKSLLESG--IVVAHNAVFDVSVIKNCCLNTGCPVPKVTYFDSVPL 120

Query: 100 ART---NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           +R      +   L      L           G       C   + +        +     
Sbjct: 121 SRRAFPLLVNHKLDTVARYLKIPLDHH--HAGSDA--YACLAIVAAAMAKYEMCDCETML 176

Query: 157 QLFG 160
               
Sbjct: 177 NYLK 180


>gi|194743424|ref|XP_001954200.1| GF18156 [Drosophila ananassae]
 gi|190627237|gb|EDV42761.1| GF18156 [Drosophila ananassae]
          Length = 586

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 127/547 (23%), Gaps = 96/547 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  D E      +   G         + L   +       L+       +P DL + L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHQGLCALFRLCHMKQIPKDLRELL 127

Query: 62  RDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            D+ V+ V         + +      G+ +           A T      L+  C+    
Sbjct: 128 EDDAVIKVGVAPQE---DAMKLSHDYGVGV-----------ASTLD----LRFLCVMAGH 169

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK            +    C+     Q       Y   D      ++++L 
Sbjct: 170 KP----EGLGKLSFRHLDYPLDKNWRLACSNWEAKQLEPPQLNYAANDALVAVAIYEKLC 225

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              +                +  D   +             L +      D         
Sbjct: 226 RDLE--------------PRHFWDRRQLNHQS---------LRQKFEPFLDVDFTKGFSL 262

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                      G+     + GT  S                 R   + S     N   +A
Sbjct: 263 SVTA------NGVTRNKPASGTGSSKEKK-----FVPKKQQYRQLVTQSKAFYDNCFLQA 311

Query: 299 VSSDGRLRGTLQFYGASRT-----GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
              DG L  T+    A+       G           L  +     +           E  
Sbjct: 312 --PDGELLCTIDRRKATWYVDQNLGTRICEEPLTVRLNFEPAGRAVGEVGRYYQTPKENR 369

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL-AWIAGEDWKIKA----FANGEDI 408
               G +   +R  ++                  V+ +  + +   +       +N  D+
Sbjct: 370 CVVCGQSDAYLRKNVVPRE--------YRRHFPVVMKSHTSHDVLLLCPSCHQLSNISDL 421

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            V            K            EL   +  G  +      + G  +      +  
Sbjct: 422 RVKNKLAVQCDAPFKHCDGMVKFHDDPELKRVHSAGKALL-----YHGDKIPAAKVALMQ 476

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG--TACELVKKAWRAKHQGVLQLWKDLTE 526
            +  + + +       +  Q  E   + +        E V + +R    G+++L +   E
Sbjct: 477 QTLLDFYTECSEVTEDLLRQAVEVDYRVENSEFCQHGERVVQQYRDHFGGLVELERLWRE 536

Query: 527 GFACVVQ 533
            F   +Q
Sbjct: 537 HFLQTMQ 543


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 29/199 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC---AYAWDDE--------PVK 43
           MS + ID ET + +      V  A+ E   +      L       +           P  
Sbjct: 1   MSVVAIDFETANERRDSACAVGLAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGILPAD 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      + ++    L     + +AHN+ F+  +        G  +P     CT  +A
Sbjct: 61  VRDAPTFPEVFAEFRPDLT--GALLLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118

Query: 101 RTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
           R          L      L         + G+      C     +   +   A+     +
Sbjct: 119 RRIFPDPAGHGLAKVAGRLGIRFEHH--DAGEDA--FACAEIALAALRETGAADIADLAR 174

Query: 158 LFGEYCKRDVEATRELFKR 176
             G    R V   R  F R
Sbjct: 175 GLGLMPIRAVAGPRRDFTR 193


>gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603]
 gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603]
          Length = 385

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 51  PQLGLIQM-FDGENLSLIDPTVIDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 106

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 107 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 160

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T   +     L + E  +    +  N     +D+    
Sbjct: 161 LEYAAADVFYLLPMYEKLLERVTHAGWWE-AALQESELQVAKRTKVSNPELAYLDIKGAW 219

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 220 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 268


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K +GI+      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKVGIEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 41/143 (28%)

Query: 6   IDIETRSP----QPLPKVGVWAYA----------------------EQAVITLCAYAWDD 39
            D ET         + ++G                             + +   +     
Sbjct: 282 FDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNPGRPIPPASSKVHGIS----- 336

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICT 96
               + D  +     +D  +    E+V+ VAHN+ F+    +K     G++      + T
Sbjct: 337 -DTMVADAPQPLEAVADFHE-FARESVI-VAHNAPFDLAFLQKYGKVAGLE-WPHPILDT 392

Query: 97  SVLARTN---GLPSSLKNACLAL 116
            +L+          +L   C  L
Sbjct: 393 VLLSAVVFGSNEVHTLDALCERL 415


>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 867

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 35/131 (26%), Gaps = 23/131 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     + H +  + I  ++  GI +       T   +R   L   SL+     
Sbjct: 321 LREIFKDPKKKKIMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLGRNSLEFL--- 375

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +          +    Y + D      ++ 
Sbjct: 376 ----------------LQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYD 418

Query: 176 RLIPLSDGERD 186
            +    +    
Sbjct: 419 VMRLELERMAK 429


>gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
 gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
          Length = 388

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 32/195 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL- 61
            + ID E        +   +       + L   A D+      D        S LL  + 
Sbjct: 25  YIAIDTE------FMRENSYW----PDLCLVQVA-DEHEAAAIDPKAPGLDLSPLLDLMV 73

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +E V+ V H    +  +     G          T + A   G           + +   
Sbjct: 74  DNEDVLKVFHAGGQDLEIIYNLTGKT--PHPLFDTQIAAMALG-------LGEQIGYG-- 122

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L+  +    +D        A      +   +Y   DV    ++F +++   
Sbjct: 123 --------NLVDAWLGVQLDKGARFTDWARRPLD-KRQIDYAIGDVTYLIQIFPKMLEEL 173

Query: 182 DGERDLWLLDQTIND 196
                   LDQ +  
Sbjct: 174 RRTGRGDWLDQEMER 188


>gi|262342107|gb|ACY54564.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS  + +V ADL+GIE R+LA          A  +             +    
Sbjct: 12  EFRKLFKASPNQVMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 65  DKIGISRRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKEIRQAYMDAVPGLEKL 124

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 125 VNAVKSKA-ESGYINLCDGRRC 145


>gi|152978878|ref|YP_001344507.1| hypothetical protein Asuc_1210 [Actinobacillus succinogenes 130Z]
 gi|150840601|gb|ABR74572.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z]
          Length = 254

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 69/229 (30%), Gaps = 71/229 (31%)

Query: 1   MSKLFIDIET----------RSPQPLPKVGVWAYAEQ----------------------A 28
           M  +FIDIET             + L   G +  AE                        
Sbjct: 39  MR-IFIDIETIPTTNADYQNYVCENLKAPGNYKNAEAIEKWLEENKGEAVNKTALDGAFG 97

Query: 29  VITLCAYAWDDEPVKL-----WDRTEQSA-MPSDLLQYL---RDETV---MCVAHNS-LF 75
            I +   A DDE   L     W   ++   + +    YL    +++      + HN   F
Sbjct: 98  EIVVIGVAIDDEEPVLFYREDWQSADRETDILTRFNNYLREHANKSTSAPQFIGHNITKF 157

Query: 76  -ERILFKKTLGIDIPS------KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
            +R +F++++   +        +    T       G   SL   C  L          E 
Sbjct: 158 DDRFIFQRSVVNGVKPYYTTSRQNTYDTMTEWAGYGGTVSLDKLCKVL--------DVEQ 209

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           K           D       +           EYC +DVE  R+++KR+
Sbjct: 210 KG----------DIDGSKVWQYVQDGKISEVAEYCAKDVERVRQIYKRM 248


>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 826

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 19/126 (15%)

Query: 5   FIDI----ETRSP---------QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS 51
           +ID     ET              L      +Y  Q    L   +   E   L D     
Sbjct: 250 WIDTPDKLETLCSILEGVTEFAVDLEHHDFRSY--QGFTCLMQISTRTED-FLVDTLILR 306

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110
                L     +  ++ V H +  +    ++  G+ +       T   +    L   SL 
Sbjct: 307 NSLHALNTSFANPQIVKVFHGAEMDIQWLQRDFGVYV--VDLFDTYHASHALELEGHSLA 364

Query: 111 NACLAL 116
                 
Sbjct: 365 FLLKYY 370


>gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451]
 gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451]
          Length = 381

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVIDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T   +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLLERVTHAGWWE-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  GI+      I T  
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 534

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 594

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 595 NDSMGQGDAYK 605


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  GI+      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|167600398|ref|YP_001671898.1| DNA polymerase part I [Pseudomonas phage LUZ24]
 gi|161168261|emb|CAP45426.1| DNA polymerase part I [Pseudomonas phage LUZ24]
          Length = 169

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 31/124 (25%)

Query: 68  CVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLALNFSEHL 122
            V HN L ++  + +K  GI IP  R   T V +R          SL      L      
Sbjct: 58  VVGHNILDYDNRVLEKLHGIIIPPDRSYDTLVASRLTWPDRPQGHSLGAWGKFL------ 111

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
              +  K     F K S                 +   EYC +D   +  LF  L+ +  
Sbjct: 112 ---KCHKGDFNDFSKFS-----------------EEMFEYCLQDGVVSHALFNYLLRVLG 151

Query: 183 GERD 186
               
Sbjct: 152 MTWQ 155


>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
 gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
          Length = 235

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQ----PLPKVG----VWAY----AEQAVITLCAYAWDDEPVKLWDRT 48
           M ++  D ET         + ++G    V  Y         +        DE V +   T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60

Query: 49  EQ--------SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
            +        S +  + L+++       +AHN+ F+         +     I     + T
Sbjct: 61  NERLKNEKSFSDIADEFLEFIN--GATMIAHNASFDIGFLNAELARANKPLISVDNILDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             +AR      P+SL   C      
Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGID 143


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  GI+      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTNGL-- 105
            +  + L+++  +    VAHN++F+         +    +I S+  + T  LAR      
Sbjct: 39  EILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMG 96

Query: 106 PSSLKNACLALNFS 119
           P+SL   C      
Sbjct: 97  PNSLDALCKRYGID 110


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 331

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T +       
Sbjct: 22  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 81

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
              +  +L + L  +  + VAHN++F+  +  +     GI  P +R +CT  LA+   LP
Sbjct: 82  FPEIAEELSRRL--DGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALP 139

Query: 107 ---SSLKNACLALNFS 119
                L+         
Sbjct: 140 LPNHKLETLAAHFGVE 155


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T +       
Sbjct: 24  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 83

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
              +  +L + L  +  + VAHN++F+  +  +     GI  P +R +CT  LA+   LP
Sbjct: 84  FPEIAEELSRRL--DGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALP 141

Query: 107 ---SSLKNACLALNFS 119
                L+         
Sbjct: 142 LPNHKLETLAAHFGVE 157


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 68/287 (23%), Gaps = 65/287 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK------------------ 43
             L +D ET         G       ++I + A A DD  +                   
Sbjct: 3   RLLVVDFETT--------GSHPRQGDSIIQIGAVAIDDGQITESFSTLIHPGQDIPPFIT 54

Query: 44  ---------LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
                    + D      +  D L+ L  +    VAHN+ F+    ++ L   G      
Sbjct: 55  QLTGITNEMVADAPSLEEVFPDFLRLL--DGRAFVAHNASFDLQFLQEALLSQGYYAFDG 112

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
             + T  L+R          L      L                               T
Sbjct: 113 YVLDTVELSRVLLPMQNSYRLGELASELEIEHDN---------------PHQADSDALAT 157

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208
               +    +  +     ++  + L        +       +++ I      +D      
Sbjct: 158 AQLFLHLLDILKKLPLVTIQRLQMLVSSFRSDIEVLLRQIEMEKLIELP--ELDGTPTKT 215

Query: 209 LQELIAQERKKL-----DEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
               +    ++L     +E +             T A    L  + G
Sbjct: 216 DSSDMWDIYRQLALRKREEKLTASLKHPPVDVTVTKAFAEQLEDVLG 262


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 31/143 (21%)

Query: 3   KLFIDIETRSPQP-----------LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-Q 50
            +  DIET    P           + K G     EQ  I     A +       + T   
Sbjct: 416 YVCFDIETTGLSPRYHELIEFGATIIKNGSVISREQFFIK----AKNSLSAFTINLTGIT 471

Query: 51  SAMPS----DLLQYLRD-----ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
             M      +L   L       E  + VAHNS F+     +      ++IP   +I T V
Sbjct: 472 DQMLKNEGLELKPALLKISKLFENRIAVAHNSTFDMNFLFQKFLDNKMEIPKTTFIDTLV 531

Query: 99  LARTN---GLPSSLKNACLALNF 118
           ++R          L+N    L  
Sbjct: 532 VSRLLFSKDSKHRLENYVGRLGI 554


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G+D P    I T  
Sbjct: 473 TDDMLTDAPEVGEVFKKFQAWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L     +       Y    
Sbjct: 533 LARFLFPDMKNHRLNTLCKKLDIELTQHHRAIYDTEATGYLLAKMLKEVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDSYK 603


>gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 377

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 64/225 (28%), Gaps = 22/225 (9%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H    +  +  +  G          T + A    L  S+      L     
Sbjct: 73  ENPDVIKVLHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSMGY--SRLVQEVL 128

Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFK--RLI 178
              + +G+       +   ++   Y    A H+            D +    L     L+
Sbjct: 129 DIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRARLSDDKYAWLLDDGAELV 188

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                E D + + +      +++    +  L+EL A   ++    
Sbjct: 189 ANLRREVDPYEVYRDA-KLAWKLSRAQLAVLRELCAWREREARAR 232


>gi|229472249|gb|ACQ72639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
 gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
          Length = 264

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 36/142 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----------------------AVITLCAYAWDDEP 41
           FID+ET    P+    +   A Q                       A +T   Y    E 
Sbjct: 52  FIDLETTGSCPIKHEILEIGAVQVRGGEIINRFETLVKVKSVPDYIAELTGITY----ED 107

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSV 98
                         +L  +L +   + VAHN+ F+     +     +  P     +CT  
Sbjct: 108 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 163

Query: 99  LA--RTNGLPSSLKNACLALNF 118
           L+      +  SL      L F
Sbjct: 164 LSKRAILSMRYSLSFLKELLGF 185


>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 392

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 55/202 (27%), Gaps = 32/202 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A       + D        S  L  LR
Sbjct: 22  FVAVDTE------FMRETTYW----PKLCLIQAAAPSAEA-VIDPLADDIDLSCFLDILR 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE++  V H +  +  +F     +    K    T V                        
Sbjct: 71  DESIQKVFHAARQDVEIFNN---LGAMPKPLFDTQVA-----------GMAAGFG----- 111

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +     AL+ +  K  ID        A    +      Y   DV    +L+  L    +
Sbjct: 112 -EQIAYDALVRQMLKIEIDKSSRFTDWARRPLSDSQLT-YALADVTHLAKLYPLLRQRLE 169

Query: 183 GERDLWLLDQTINDRGYRIDLD 204
            E  L  +   +ND     + D
Sbjct: 170 REGRLAWVTDEMNDLTDPANYD 191


>gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226]
 gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226]
          Length = 381

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWE-AALQESELQVVKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 40/158 (25%)

Query: 1   MSKLFIDIETRSPQP-----LPKVG-------------------VWAYAEQAVITLCAYA 36
           M ++ +D ET    P     + ++G                       +E+      A A
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPERDSEEG-----ALA 55

Query: 37  WDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK--- 91
                 +   D+ + + +  +   ++       + HN+ F+      +   +++P     
Sbjct: 56  VHGLTTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQ 113

Query: 92  --RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
               I T V A+        SL   C     S    K+
Sbjct: 114 VHGVIDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKL 151


>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-------- 55
           L +D ET    PL    V   A    I                   +  +P         
Sbjct: 5   LVLDTETTGFDPLTGDRVLEVAA-VEIVNL---VPTGRHFHMLIDPERDVPEEATKVHGF 60

Query: 56  ------------DLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTS 97
                       ++   + D       +AHN+ F+        KK     +   R + T 
Sbjct: 61  TREMLIGKPKFAEIAPAMLDFLGDDPIIAHNAPFDFGFLDWELKKAGHKALDRARMVDTL 120

Query: 98  VLA--RTNGLPSSLKNACLALNFS 119
            LA  R  GLP+SL   C      
Sbjct: 121 ALAKKRFPGLPNSLDALCRRYGID 144


>gi|262342131|gb|ACY54576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 42/149 (28%), Gaps = 13/149 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R     + G+ +V ADL+GIE R+LA        +  F  G    +  +     
Sbjct: 7   PSDSEFRKLFQPTPGQIMVGADLSGIELRMLAHY------LARFDRGVYADILLHGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN---VKSTSTFEDW 475
              DK+    R   K +  A  Y  G              L          +  + F + 
Sbjct: 61  VNADKI-GISRRAVKTVTYAFLYGAGDAKI---GLSYDSSLSPTRAKSKGKEIRTAFVEA 116

Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               +  L       E      +     +
Sbjct: 117 IDGLAQLLEAIKTASEKGYVRSIDTRKIK 145


>gi|262212355|gb|ACY35794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 36/142 (25%), Gaps = 13/142 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    A+ G+ +V ADL+GIE R+LA          A  +             +      
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHY-------LARYDEGRYASILLHGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R   K +  A  Y  G              L +     K     + +  A      
Sbjct: 66  IGISRRQVKTVIYAFLYGAGDSKL---GRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTAC 503
                    E    +      C
Sbjct: 123 LVTAVKSKAESGYINLCDSRRC 144


>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 230

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGV---------WAYAEQAVITLCA 34
           M ++  D ET    P                 +    V            AE   +   +
Sbjct: 1   MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPDRDMPAEAEAVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
            A+  +  K  +R       ++LL +L D     VAHN+ F+       L      ++  
Sbjct: 61  AAFLSDKPKFSERA------AELLDFLGDA--PLVAHNAGFDFGFLNSELTFCGMGEVSR 112

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
            R + T  +AR    G   SL   C      
Sbjct: 113 DRMVDTVAIARRKHPGAKLSLDALCSRYGID 143


>gi|262342113|gb|ACY54567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 41/149 (27%), Gaps = 13/149 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I S G  +  ADL+GIE R+L+        +  F  G    +        
Sbjct: 7   PSDGRFRELFIPSKGLVMCGADLSGIELRMLSHY------LARFDGGRYAEILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R   K +  A  Y  G +            L   +   K       +  A
Sbjct: 61  VNADKI-GISRKQVKTVTYAFLYGAGDEKI---GYSYDAQLSSTAAKRKGKEIRSAYVSA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTACE 504
                       +  E      + G   +
Sbjct: 117 VDGLGDLLTAVAKAAERGFVKSIDGRKIK 145


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLW------------ 45
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPADITRITGITD 135

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D  +   +P + L  L  E  + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 DMVKGQTIPREKLDALIAEADIIIAHNAGFDRPFLERFS-IAFANKPWACS 185


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---DEPVKLWDRTEQSAMPSDL 57
           M ++ +D ET     L    +        I      ++              +  MP + 
Sbjct: 1   MREIVLDTETTGLDALRGDRL------VEIGCVEM-FNHMPTGQTYHVYINPERDMPQEA 53

Query: 58  L-------QYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSK 91
                   ++L D+                   + HN+ F+        ++     IP +
Sbjct: 54  FAVHGLSSEFLSDKPLFAAVAEDFLTFIGDAPLIIHNASFDIGFINMELERVKRAAIPRE 113

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
           R + T +LAR      S  L + C      
Sbjct: 114 RLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234]
 gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234]
          Length = 383

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 52/193 (26%), Gaps = 31/193 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + ID E      L +   W       + L   A   +   + D        +     +
Sbjct: 19  SYITIDTE-----FLRETTFW-----PELCLIQMA-GPDTAVIVDPMAPGIDLAPFFALM 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H +  +  +    LG ++       T V A   G   S             
Sbjct: 68  ANADVVKVFHAARQDIEII-HHLG-NLIPHPLFDTQVAAMVCGFGDS------------V 113

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  +    +  K S  +        +          Y   DV   R+++  L    
Sbjct: 114 SYDQLVSRIKNVQIDKSSRFTDWSRRPLTDKQLD------YALADVTHLRDVYHYLKAEL 167

Query: 182 DGERDLWLLDQTI 194
           + E     L + +
Sbjct: 168 EREGRSSWLAEEM 180


>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 44/211 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID E  S        +  Y E   + L   +     + +      S     L     
Sbjct: 23  RIPIDTEADS--------LHCYFE--KLCLIQISVPGHDLLIDPLAGIS-----LQPLFE 67

Query: 63  D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
                  + H + ++  L ++ +G  + +     T + AR  G                 
Sbjct: 68  AFAGKELIIHGADYDLRLLRR-VGFTV-TAPVFDTMIAARLCG----------------- 108

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +     ALI R+   ++         A    +     +Y  +D     E+   L    
Sbjct: 109 -IEEFSLAALIKRYFDVALTKASQKANWARRPLS-PQMADYAVKDTHYLLEIAGIL---- 162

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             E +L  LD  +       D  +       
Sbjct: 163 --EAELTRLD-RMEWFRQSCDKAVAASAITK 190


>gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 395

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 51/193 (26%), Gaps = 41/193 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + L   A  +  V + D T      S L
Sbjct: 33  FVTIDTEFVRERTYW---------------PELCLVQLA-GENDVVVIDTTAPGIDLSSL 76

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L D  V+ V H +  +  +F      D        T V A   G             
Sbjct: 77  GGLLDDAGVIKVFHAARQDLEIFLHLF--DRLPAALFDTQVAAMVAGYG----------- 123

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                   + G   +     G      +  +  +          Y   DV   R+++ +L
Sbjct: 124 -------DQVGYDNLVWSLLGVQIDKSHRFSDWSVRPLSAAQIGYAAADVTYLRQVYGQL 176

Query: 178 IPLSDGERDLWLL 190
           +   + E  L  +
Sbjct: 177 LAQLEKEGRLDWV 189


>gi|229472265|gb|ACQ72647.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 13/140 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    AS G  +V ADL+GIE R+LA          A  +             +      
Sbjct: 13  RRLFCASPGHIMVGADLSGIELRMLAHY-------LARYDDGRYGDILLHGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L       K     + +  A      
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDQRI---GESYDQSLPPDKAKQKGKEIRQAYMDAIPGLEK 122

Query: 485 MQD---QYPEFAVKDKLIGT 501
           + +   +  +      + G 
Sbjct: 123 LVEATKKAADRGFIRSIDGR 142


>gi|229472257|gb|ACQ72643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 65/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA        +  +  G    V           DK+
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY------LAHYDGGRYGDVLLNGDIHQENADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 67  -GISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 177

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 21/139 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC----AYAWDDEPVKLW---DR 47
           M+ L +D ET S +P   V +         I      L     ++++ +  +      D 
Sbjct: 1   MNFLAMDFETASSEPWSAVSLGLTIVRDNQIAQNWYSLIKPETSFSYWNTEINGLTADDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
            +    P        L D+  + V HN  F+  + K   K  G+  P    + T  L+R 
Sbjct: 61  LDSPKFPEVWADIKNLYDDYPVVVGHNIRFDNNVLKQTLKYYGLKTPRYLSLDTVYLSRK 120

Query: 103 NGLP---SSLKNACLALNF 118
                    L      L  
Sbjct: 121 FQPGMVNHKLDTVVSDLGL 139


>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
 gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 13/219 (5%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             + L    +D E + L D        P   ++ L+D +V+ V H    +  +FK + G 
Sbjct: 65  PQLGLIQL-FDGENLSLIDPLAMDEMTP--FVELLQDTSVLKVLHACGEDIEVFKTSFG- 120

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                  + T ++A   G   S   A   L       ++++ ++      +         
Sbjct: 121 -CVPFPMVDTQIMAAFLGYGLSTGFAA--LAHDLLNVELDKSESRTDWLARPLSQ----K 173

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    + L   Y +   + T+  +       + E  +    +T +     +D+   
Sbjct: 174 QLEYAAADVFYLMPMYEQLLEKVTQAGWWE-AAQQESELQVEKRTRTTDPEMVYLDIKGA 232

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            +L+       K L     +       +          L
Sbjct: 233 WQLKPKELAILKPLATWRYQEAMNRDLALNFVIRENDLL 271


>gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 47/193 (24%), Gaps = 39/193 (20%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRD 63
            +D E  S        ++ Y   A + L      +    + D      +      + ++ 
Sbjct: 30  AVDTEADS--------MYHYT--ARLCLIQITIGEHH-YIVDPLCGLDLAPLFKARAMQ- 77

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
                + H + ++  L  +T G     K    T + A+  G     L +           
Sbjct: 78  ---TLIFHGADYDLRLLWQTYGF--SPKSIFDTMLAAKILGEQHLGLADL---------- 122

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            K   G  L                             EY   D     EL   L     
Sbjct: 123 VKEYFGDELKK----------ENQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQ 172

Query: 183 GERDLWLLDQTIN 195
               +  L +  N
Sbjct: 173 QAGRMNWLTEQCN 185


>gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84]
 gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84]
          Length = 381

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 46/192 (23%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +   +     + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTTEVLVDPLAKGLDL-KPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  VM V H +  +  +        +       T V A   G      +       S   
Sbjct: 69  NTAVMKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRIK 123

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                    I                    +        Y   DV   R+++  L    +
Sbjct: 124 N--------IQIDKSSRFTDWSRRPLSEKQLD-------YALADVTHLRDVYLSLKEQLE 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRASWLLEEM 180


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 30/141 (21%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAEQAVITLCAY--------AWDDEPVKLW----DRT 48
            D ET    P     + ++G         +   A+           +E  ++     D  
Sbjct: 547 FDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADML 606

Query: 49  EQSAMPSDLLQ---YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLAR 101
               +   +L        +TV+ VAHN+ F+    +  L  D+   R+      T +L+ 
Sbjct: 607 AGQPVIEAVLPSFHAFAADTVL-VAHNAAFDMRFLQ--LKEDLTGLRFDQPVLDTLLLSA 663

Query: 102 TNGL---PSSLKNACLALNFS 119
                     L+     L  +
Sbjct: 664 VIHPNQDSHRLEAIAERLGIT 684


>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 244

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET    P                  L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + +   +  ++  +    + HN+ F+      +   +D+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
 gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
          Length = 235

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 37/154 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET   + +         E   + L                       A+A  
Sbjct: 1   MRQIILDTETTG-RDINNG--HRIIEIGCLELIDRQLTKRQFHCYLNPGRDSDPGAFAIH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-------IPS 90
                 L D+   + +  +LL +++D     + HN+ F+    +  L +           
Sbjct: 58  GLSTEFLMDKPVFTTIADELLNFIKDSQ--LIIHNAPFDLAFLEYELTLTKKKYKKMTDY 115

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFSEHL 122
            + + + +LAR        SL   C   N     
Sbjct: 116 CQILDSLLLARQLHPGQRNSLDALCKRYNIDHSK 149


>gi|148675119|gb|EDL07066.1| polymerase (DNA directed), gamma, isoform CRA_b [Mus musculus]
          Length = 1239

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 87/339 (25%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 841  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIA 899

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 900  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQ 959

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L +     K+   +   +    + L    +          +     L
Sbjct: 960  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGE---------WLVKQLNL 1010

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L + +    +   +      A   A           +   I +  +
Sbjct: 1011 PVDRTEDGWVSLQDL-RMIRREASRKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDT 1069

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
             R          +   +                  +VQ+ + D   ++   MK   +   
Sbjct: 1070 PRTPVLGCCISRALEPSVVQGEFITSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1124

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1125 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
           familiaris]
          Length = 1012

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D T++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 478 LNESLTDPTIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHL--- 532

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   K+        ++        P      N+ +    +  Y    +     L++
Sbjct: 533 -------LKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLE--LWE 583

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        + +W   + I 
Sbjct: 584 RGNEQPVQLQVVWQRSRDIC 603


>gi|87080815|ref|NP_059490.2| DNA polymerase subunit gamma-1 [Mus musculus]
 gi|37537265|dbj|BAC98463.1| polymerase (DNA directed), gamma [Mus musculus]
          Length = 1217

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 87/339 (25%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 819  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIA 877

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 878  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQ 937

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L +     K+   +   +    + L    +          +     L
Sbjct: 938  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGE---------WLVKQLNL 988

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L + +    +   +      A   A           +   I +  +
Sbjct: 989  PVDRTEDGWVSLQDL-RMIRREASRKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDT 1047

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
             R          +   +                  +VQ+ + D   ++   MK   +   
Sbjct: 1048 PRTPVLGCCISRALEPSVVQGEFITSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1102

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1103 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1141


>gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
 gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
          Length = 231

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------AYAWDDEPVK 43
           M ++ +D ET   +P          E   + L                  +   +   V 
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGALELFNHLPTGRTFHKYLNPERSMPKEAFDVH 57

Query: 44  LW--DRTEQSAM----PSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWI-- 94
               D      +      + L+++ D     V HN+ F+      +    ++P   +   
Sbjct: 58  GLGDDFLRGKPLFRAVAREFLEFIGDA--TLVIHNASFDMKFLNAELAAANLPLLPFERA 115

Query: 95  -CTSVLAR--TNGLPSSLKNACLALNFS 119
             T ++AR    G P+SL   C      
Sbjct: 116 LDTVLMARKKFPGSPASLDALCRRFGVD 143


>gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4]
 gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4]
          Length = 384

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      + +   +       + L   A  D    L D   +          + 
Sbjct: 22  FVTVDTE-----FMRETTYY-----PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMA 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           DE+ + V H++  +  +    L   +  + +  T V A   G   S
Sbjct: 72  DESTVKVFHSARQDLEII--WLLGGLLPQPFFDTQVAAMVCGYGDS 115


>gi|332021038|gb|EGI61427.1| Exonuclease 3'-5' domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 832

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 67/261 (25%), Gaps = 33/261 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             +TL           ++D      +     L + L    V  V H+   + +       
Sbjct: 431 GQLTLVQIGTMSGQAYVFDLVTCPGLVQAGGLQKLLEHPHVTKVIHDCRNDSVNLYNQFN 490

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      +L   C   N   +  K          
Sbjct: 491 ITL--TNVFDTQAAHAVLQFQDTGKPVYKVKNVNLNTLCDHYNAPCNPLK---------- 538

Query: 135 FCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQ 192
                + +      R    +   +    Y   DV     +++  +  L   E++    + 
Sbjct: 539 ---EQLKNIYRKDQRYWSRRPITREMLIYASSDVLSLVPQVYNAMSRLIKPEQESLFAEL 595

Query: 193 TINDRGYRIDLDLVL--KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
                   I   +V   K Q  IA E   L + + + T   I  S +   L  YL L   
Sbjct: 596 CEEQIQMHIRPAIVKARKKQRKIATELSDLKKRMEEATSKNIVLSNREIRLLRYLDLTED 655

Query: 251 IDLV-DMSEGTLKSILSHSNI 270
                  S    + +    N+
Sbjct: 656 EKEKLKGSYKVARKLEKLENM 676


>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNFS 119
             +  SL      L FS
Sbjct: 193 LSMRYSLSFLKELLGFS 209


>gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus
           (Silurana) tropicalis]
          Length = 1431

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 39/250 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  DIE     P+   G     +   + L      ++   L+  +  +  P  L + L D
Sbjct: 73  LGFDIE---WPPIYTKG-----KTGKVALIQVCVSEKKCYLFHISPMAGFPKGLRRLLED 124

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---NACLALNFSE 120
           E+V  V               G+ I   +W    +++        LK         N   
Sbjct: 125 ESVKKV---------------GVGIEGDQWK---LMS---DYELKLKGFIELSEVANQKL 163

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEATRELFKRLIP 179
              +      L+    K  +            +         Y   D  A   ++++L  
Sbjct: 164 RCKEKWSLNGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLEC 223

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
           +   E+  + +      R    D + + +    ++     L +D+         + R   
Sbjct: 224 MDAHEKVSFCV-----SREGVADFEGIKRQLTDLSNGFMDLVKDVPSSFGHSTGALRAVA 278

Query: 240 ALRMYLFLIT 249
            +   L    
Sbjct: 279 -ILEDLSEKL 287


>gi|302652096|ref|XP_003017908.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
 gi|291181493|gb|EFE37263.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
          Length = 1137

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 75/329 (22%), Gaps = 74/329 (22%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   +  T                    +++ + A  G   V AD+   E 
Sbjct: 671 PQVIPMGTITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEEL 725

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 726 WIAS-LVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNYAKVFNYGRIYG 784

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K   T+       + +                        +    +   + K   T 
Sbjct: 785 AGLKFAATLLRQFNPSMSEAE---------------------TKAVAAKLYKETKGTRTT 823

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             ++ +    +  G      +  E FA   +    +    +              +    
Sbjct: 824 RRILSENPFLRG-GTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGGFMTSR- 881

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KN 616
                                                  +Q+   D   +L   M     
Sbjct: 882 -----------------------------------INWAIQSSGVDYLHLLIISMDYLIR 906

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                  + +TVHDEI     +T  +   
Sbjct: 907 RFNLDARLAITVHDEIRYVVRETDKYKAA 935


>gi|229472533|gb|ACQ72781.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSEAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 9/86 (10%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA 100
           + D      +     + L     + V HN  F+R          GI +P    + T  L+
Sbjct: 77  VADAPSARTVIERTARLLE--GTVMVGHNVRFDRSFLGAAADAAGITLPEVPVLDTLTLS 134

Query: 101 RTNG----LPSSLKNACLALNFSEHL 122
           R           L      L      
Sbjct: 135 RVLLDGEVPNHRLATLAHYLQLPPPS 160


>gi|229472373|gb|ACQ72701.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 61/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R + K +  A  Y  G K            L   +                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542
                                + +++A+     G+ +L   +                  
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKA-------------- 131

Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602
                        +  +I L   RR                            K    ++
Sbjct: 132 -------------QSGYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDE 631
           Q  +  +    M          +     +  +HDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
           D  ++  +  D   +   +  + VAHN+ F+     K     GI+      I T  L+R 
Sbjct: 481 DAPQEDVVLKDFYDF--SQNTILVAHNASFDIGFLNKGYERIGIENTPLPVIDTLELSRM 538

Query: 103 NGLP---SSLKNACLALNFS 119
                    L         +
Sbjct: 539 VNPHLKSHRLNTLAKRYGVN 558


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  GI+      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 41/150 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLW-------------- 45
           M+ + ID ET + +      +     +   I         E V                 
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 46  ----------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKR 92
                     D  E   +   +  Y  +   +  AHN+ F+  + +       I +PS  
Sbjct: 53  IHGIRPRMVQDELEFDKIWGKIKHYFNNN--LVTAHNASFDISVLRNTLKLYNIKMPSFD 110

Query: 93  WICTSVLA---RTNGLPSSLKNACLALNFS 119
           +ICT  L+    +N     L      L + 
Sbjct: 111 YICTMKLSKNFYSNIDNVRLNTVNNFLGYK 140


>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 40/158 (25%)

Query: 1   MSKLFIDIETRSPQP-----LPKVG-------------------VWAYAEQAVITLCAYA 36
           M ++ +D ET    P     + ++G                       +E+      A A
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPERDSEEG-----ALA 55

Query: 37  WDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK--- 91
                 +   D+ + + +  +   ++       + HN+ F+      +   +++P     
Sbjct: 56  VHGLTTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQ 113

Query: 92  --RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
               I T V A+        SL   C     S    K+
Sbjct: 114 VHGVIDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKL 151


>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
 gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
          Length = 377

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 79/296 (26%), Gaps = 49/296 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +  +A +       D     L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPKAGLVQIG---DGNQAFLIDPLLISDWQP--LADLL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNF 118
            D  V+ V H    +  +  +  G     +    T + A    +  S+         L  
Sbjct: 73  DDSGVVKVLHACSEDLEVLLRLTGK--LPQPLFDTQLAAGYLNIGFSMGYSRLVQEVLGL 130

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                ++ +G+       +                   +    Y   D     ELF  L 
Sbjct: 131 -----ELPKGETRSDWLQRPLS----------------ETQVSYAAEDAVHLAELFSALR 169

Query: 179 PLSDGERDLWLLDQTINDRGYR---IDLDLVL---KLQELIAQERKKLDEDIVKLTDGII 232
           P    ++  W+LD            +D + +    KL   + +++  +  ++    +   
Sbjct: 170 PRLSDDKFAWVLDDGAELVAALRREVDPETLYRDVKLAWKLGRQQLAVLRELCAWREREA 229

Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGS 287
           R+          L   +   +      +L ++        +  +      +     
Sbjct: 230 RNRDVPR--NRILKEHSLWPMAKSQPDSLPALGRIDEMHPRTIRQDGEFLIQLIKR 283


>gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1]
 gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 31/246 (12%)

Query: 28  AVITLCAYA---WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
           A + L   A    DD    L D   +      L +  R+  V+ V H +  +  +F    
Sbjct: 38  AQLCLVQVAMPGTDDTDAVLIDPLAEGLSLEPLYELFRNVNVVKVFHAARQDLEIFFVEG 97

Query: 85  GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           G  +       T V A   G               +   +    +   A   K S  +  
Sbjct: 98  G--LVPTPLFDTQVAAMVCGFG------------DQVGYETLVRRIAKANLDKSSRFTDW 143

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----DGERDLWLLDQTINDRGYR 200
                ++          Y   DV   RE+++ L                L Q  N   Y 
Sbjct: 144 SRRPLSDAQ------KVYALADVTYLREIYEYLSAELARTDRTHWLEEELAQLTNADAYV 197

Query: 201 IDLDLVLKLQEL--IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           +D +   K  +L   +     + + +    +   +           L     ++L     
Sbjct: 198 VDPENAWKRLKLRSNSGRVVAIAQQLAAFRETYAQEKNVPR--NRVLKDDALLELAGTKP 255

Query: 259 GTLKSI 264
            T+  +
Sbjct: 256 KTVADL 261


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAEQAVITL--CAYAWDDE---PVKLWD-------RT 48
            D ET    P     + ++G        ++         D     P +            
Sbjct: 519 FDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEMV 578

Query: 49  EQSAMPSDLLQYL---RDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLART 102
           +     +++L        +TV+ V HN  F+       +   G+    +  + T +LA  
Sbjct: 579 QGQPRIAEVLPAFHAYASDTVL-VGHNVAFDMRFLQLKEAATGLRFD-QPVLDTLLLASI 636

Query: 103 ---NGLPSSLKNACLALNFS 119
              +    SL+     L   
Sbjct: 637 AQPHEPSHSLEAIAARLGVE 656


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 38/149 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------------------ 45
           +  D+ET    P+    V        I    +   +                        
Sbjct: 22  VTFDLETTGLDPVRHSVV-------EIACVKFQGGEPRAFFSLLVKPPHPIPAEVTKIHG 74

Query: 46  ----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
               D  E   +PS +L  L     T + VAHN+ F+    +      G   P  R I T
Sbjct: 75  IGDQDVEEAPPLPS-VLPMLESFVGTHLLVAHNAPFDLSFLRMEYARCGRPYPGFRAIDT 133

Query: 97  SVLARTNGLP---SSLKNACLALNFSEHL 122
            +LAR+        SL +   AL+     
Sbjct: 134 RLLARSVLPHLGRYSLASLTRALDIPLQH 162


>gi|229472495|gb|ACQ72762.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K    A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTATYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|301612456|ref|XP_002935732.1| PREDICTED: coiled-coil domain-containing protein 141-like [Xenopus
            (Silurana) tropicalis]
          Length = 1411

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 54/212 (25%), Gaps = 16/212 (7%)

Query: 458  DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            D  Q SQ     + F+   +   +         + +    +     +         +   
Sbjct: 814  DELQLSQIQDQQTHFQTLYKLVVNLGREIISTIQHSKHITIPVMELQEQIAKMERDNACW 873

Query: 518  LQLWKDLTEGFACVVQEGGSIS----ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573
                    +     +  G +I      +      +      K +        R L     
Sbjct: 874  NSTVDKQEKQLLSHLDFGTTIEDINELKESFKDLKKKFNNLKFNYTKKAEKGRNLKVIKN 933

Query: 574  KGDCSYLNTATSQLMRERT-YGGKLTENIV---QAISRDILCEGMKNATKNGYDIVLTVH 629
            +     +     Q +R++    GK         QA   D + E M +  K        VH
Sbjct: 934  QIQQVEMYAERMQALRKKVDNLGKKMPVPTVTPQANGADAVQEAMGDFQK-------QVH 986

Query: 630  D-EIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660
            D  IV E           L  +M +   W + 
Sbjct: 987  DFSIVIEEYKQNLEMAEDLHHIMEECQFWCEE 1018


>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
 gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
           6), putative [Cryptococcus gattii WM276]
          Length = 851

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 14/117 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQY 60
            ++ +D+E           + +Y       L   +  +    +   + +  +        
Sbjct: 172 KEIAVDLE--------HHDMRSY--SGFTCLIQISTRENDWVVDTLSLRKEIQQDKFGDV 221

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
             D TV+ V H +  + +  ++    +I       T       G+P  SL       
Sbjct: 222 FTDPTVVKVFHGADSDIVWLQR--DFEIFVVNLFDTYNACVVLGMPQRSLSALLQHY 276


>gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    P+    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 42/142 (29%), Gaps = 36/142 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQA-----------------------VITLCAYAWDDEP 41
           FID+ET    PL    +   A Q                         +T  AY    E 
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYITELTGIAY----ED 130

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSV 98
                         +L  +L +   + VAHN+ F+     +     +  P     +CT  
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LA--RTNGLPSSLKNACLALNF 118
           L+      +  SL      L F
Sbjct: 187 LSKRAILSMRYSLSFLKELLGF 208


>gi|74226616|dbj|BAE21732.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 92/344 (26%), Gaps = 43/344 (12%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 819  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIA 877

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 878  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQ 937

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA--- 502
               + +       L +     K+   +   +    + L    ++    +   +  T    
Sbjct: 938  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGW 997

Query: 503  --CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560
               + ++   R   +     WK            G             +        +  
Sbjct: 998  VSLQDLRMIQREASR--KSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGC 1055

Query: 561  VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNA 617
             +   R L  S V+G+                        +VQ+ + D   ++   MK  
Sbjct: 1056 CIS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWL 1097

Query: 618  TKN---GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
             +         +++HDE+     +   +           L   M
Sbjct: 1098 FEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1141


>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis]
          Length = 875

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 50/200 (25%), Gaps = 41/200 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID+E             +Y  +  ++L   +       + D          L +   +
Sbjct: 304 LAIDVE--------HHSNQSY--KGFVSLIQLSTRTHD-YIIDPFNLFNEIQMLNELTAN 352

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H S ++ I  ++     +       T   AR    P                 
Sbjct: 353 PKILKVLHGSDYDIIWLQR--DFSVYIVNMFDTGQAARILNTPG---------------- 394

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFK------ 175
               G +L                  A+  +        EY + D      ++       
Sbjct: 395 ----GYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIMKNLL 450

Query: 176 RLIPLSDGERDLWLLDQTIN 195
            L    + E  +   D  + 
Sbjct: 451 LLHRHKNTEPPVLASDAFME 470


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 38/143 (26%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAY-------AW------------DDEPVKLWDRTE 49
           E  +   +   G+   A    I   A        A             D  PV +   T 
Sbjct: 20  EGYAVVDVETTGL---ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIHGLTS 76

Query: 50  Q--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
                    S +  +L Q+L  +  + VAHN++F+  +  +     G   P ++ +CT  
Sbjct: 77  DTLADAPLFSEIADELAQHL--DGRVLVAHNAVFDWSMLAREYARAGSAAPVRQRLCTIA 134

Query: 99  LARTNGLP---SSLKNACLALNF 118
           L++  GLP     L++       
Sbjct: 135 LSKELGLPLPNHKLESLAAHYGV 157


>gi|229472241|gb|ACQ72635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 9/143 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     E  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTACE 504
              ++ +  E        G  C 
Sbjct: 124 VTAVKSKA-ESGYIQLCDGRRCP 145


>gi|262342147|gb|ACY54584.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342267|gb|ACY54644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 8/141 (5%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS+G   V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFTASSGYVTVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTA 502
              ++ +  ++   + + G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------- 48
           M ++  D ET    P     L ++G     ++   T   +     P +            
Sbjct: 1   MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRE-TGVTFHAYFNPERDMPAAAEAVHGL 59

Query: 49  -----EQSAM----PSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWIC 95
                    +      +LL +  D     +AHN+ F+        ++     +   R  C
Sbjct: 60  SSQFLSDKPLFAARVDELLDFFGDA--PLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117

Query: 96  TSVLARTN--GLPSSLKNACLALNFS 119
           T  +AR    G   SL   C      
Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGID 143


>gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 36/142 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQ-----------------------AVITLCAYAWDDEP 41
           FID+ET    PL    +   A Q                       A +T  AY    E 
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGGIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSV 98
                         +L  +L +   + VAHN+ F+     +     +  P     +CT  
Sbjct: 131 TLNAPSVH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LA--RTNGLPSSLKNACLALNF 118
           L+      +  SL      L F
Sbjct: 187 LSKRAILSMRYSLSFLKELLGF 208


>gi|229472499|gb|ACQ72764.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 37/132 (28%), Gaps = 10/132 (7%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R   I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRELFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
           +    R   K +  A  Y           +     L +     K       +  A     
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKI---GTSYDSQLTEDQARKKGAEIRRAYPDAIPGLE 121

Query: 484 WMQDQYPEFAVK 495
            + +     A  
Sbjct: 122 RLVEAVKTKAKV 133


>gi|114768885|ref|ZP_01446511.1| ribonuclease D [alpha proteobacterium HTCC2255]
 gi|114549802|gb|EAU52683.1| ribonuclease D [alpha proteobacterium HTCC2255]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 81/307 (26%), Gaps = 54/307 (17%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A      +   L D        
Sbjct: 22  YVTLDTEFLRERTYYS---------------KLCLVQMAHPGNTEDSAVLIDPLSPDLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L +  ++  V+ V H +  +  +F   +   I    +  T V A   G          
Sbjct: 67  DPLYELFKNPNVVKVFHAARQDLEIF--FIDKKIIPFPFFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+   C   +D        +    + +    Y   DV   RE++
Sbjct: 118 QVGYE----------KLVRSICNEGLDKSSRFTDWSARPLSNKQM-HYAIGDVTYLREIY 166

Query: 175 KRLIPLSDGERDLWLLDQT----INDRGYRIDLDLVLKLQELIAQERKKL----DEDIVK 226
           + L       +    +++     ++   Y ID     +  +  +   K L    +  + +
Sbjct: 167 EFLSNKIKNNKRQAWVEEELKILMDPETYTIDPKYAWRRVKTRSSSWKMLAAIAELAMFR 226

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDLIL--NRLA 283
                 ++  +    +    +          E  T   +L          + IL   R A
Sbjct: 227 EKYAQQKNIPRNRVYKDDCMMELAATRPKSLEDLTKSRLLLRDARKGQIAEGILNSIRQA 286

Query: 284 SSGSAIL 290
               +  
Sbjct: 287 DKYKSND 293


>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
 gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
          Length = 437

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 72/269 (26%), Gaps = 41/269 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E      + +   +       + L   A   +   +      S    DL   L D
Sbjct: 83  VAIDTE-----FIREKTYY-----PQLCLIQMATHTQSAVVDPLACSS--LCDLACLLED 130

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           ++++ V      +  +    LG  +  K      + A   G    L              
Sbjct: 131 KSIIKVFFACSQDIEVLYDALG--VVPKNVFDAQLAAAFLGYRYQL-------------- 174

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G   +     G         T  +     +   +Y   DV    +++  L+     
Sbjct: 175 ----GYGALVEAMVGVHLPKTQALTDWSLRPLTEEQLKYAADDVIYQPQMYTLLVRELTR 230

Query: 184 ERDLWLLDQTINDRGYRI----DLDLVLKLQE---LIAQERKKLDEDIVKLTDGIIRSSR 236
                     +      +    D     +  +    + +++  + +++    D + R   
Sbjct: 231 TNRYAWFTHEMKQTLDDMLQRRDPAQAFRHIKRVNNLTRKQLAIAKEVALWRDDVARGRN 290

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSIL 265
                +  L     I+L  ++  T    L
Sbjct: 291 VPR--KWILSDEVVIELCKLAPTTKNRAL 317


>gi|229472577|gb|ACQ72803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +  + M          +     +  VHDE
Sbjct: 160 SAGCVAKQWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET    P                  L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + +   +  ++  +    + HN+ F+      +   +D+P      
Sbjct: 57  HGLTTEFLRDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans]
 gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 2   SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT------ 48
             +FID+ET         + ++G+        I   +   +     P  + D T      
Sbjct: 6   KLIFIDLETTGANLINDRITEIGIVTVNADGDIDRWSSFVNPGRPIPSFIQDLTGISDRM 65

Query: 49  -----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
                    +   + + L D   + +AHN+ F+       L   G  +     +CT  L+
Sbjct: 66  VATAPTFETLADTVRERLEDG--LFIAHNARFDYGFLHHALARAGHALS-IDVLCTVKLS 122

Query: 101 RTNGL---PSSLKNACLALNF 118
           R         +L         
Sbjct: 123 RRFFPEEKRHNLDTLIARHGL 143


>gi|229472261|gb|ACQ72645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472379|gb|ACQ72704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472605|gb|ACQ72817.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 37/197 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE--------------PVKL 44
            + +D+ET    P    + ++G         + + A   +                   L
Sbjct: 52  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAML 111

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA- 100
                   +    L+++ D   + VAHN+ ++    K      G   P+ R + T+ LA 
Sbjct: 112 VPAPPIEQVLPSFLEFVADA--VLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAALAR 169

Query: 101 RTNG----LPSSLKNACLALN---------FSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           R  G        L                   +    ++    LIAR     +D+     
Sbjct: 170 RVLGRDEVPNRKLGTLASYFRTATRPTHRALDDAKATVDVLHGLIARLGGHRVDTVGEAI 229

Query: 148 TRANHVQAWQLFGEYCK 164
             A  V   Q    +  
Sbjct: 230 EFARAVTPTQRRKRHLA 246


>gi|229472541|gb|ACQ72785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 65/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA        +  +  G    V           DK+
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 67  GIG-RRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472365|gb|ACQ72697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  ++ ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMIGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 37/144 (25%), Gaps = 38/144 (26%)

Query: 5   FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           F+D+ET         + +VGV                      +            L   
Sbjct: 47  FVDLETTGGRPGLDRITEVGVIEVDRDG--------VRRWSTLVDPLQPIPPFVQQLTGI 98

Query: 58  ----------LQYLRDE------TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
                        L  E        + +AHN+ F+    KK     GI       +CT  
Sbjct: 99  TDAMVRGAPTFDALAAELARRLDGKLFIAHNARFDHGFLKKAFEQIGIRFDPD-VLCTVR 157

Query: 99  LARTN---GLPSSLKNACLALNFS 119
           L+R          L      L+ S
Sbjct: 158 LSRALFPRESRHGLDALAQRLDLS 181


>gi|328780055|ref|XP_623215.2| PREDICTED: hypothetical protein LOC550822 isoform 1 [Apis
           mellifera]
          Length = 664

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 71/294 (24%), Gaps = 32/294 (10%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             +TL           ++D      +     L + L  + V+ V H+   + +   +   
Sbjct: 265 GQLTLVQIGTMSGQAYVFDLFACPNLVQAGGLQKLLEHKDVIKVIHDCRNDSVNLYRQFK 324

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      +L   C       +  K          
Sbjct: 325 IMLN--NVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPSNPLK---------- 372

Query: 135 FCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQ 192
                + +   +  R    +        Y   DV     +++  +  L   E  +   + 
Sbjct: 373 ---EQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYISMSRLIKPEVQVLFNEL 429

Query: 193 TINDRGYRIDLDLVLKLQEL--IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
                   I    V   ++   +  E   L + + + T   I  S +   L  YL L   
Sbjct: 430 CEEQIQLHIKPAEVKARKKQRKVETEVADLKKRMEEATTKNIVLSNREIRLLRYLDLTED 489

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
                     +   L         K    +          + +++    S +  
Sbjct: 490 EKEKLKGSYKVARKLEKLENMGQDKGESSDDDDEDKIEDSEYHSMESYTSENSH 543


>gi|312381749|gb|EFR27423.1| hypothetical protein AND_05878 [Anopheles darlingi]
          Length = 1735

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 73/258 (28%), Gaps = 66/258 (25%)

Query: 54  PSDLLQYLRDET-------------VMCVAHNSLFERILFKKTLGIDIPSKRWICTS--- 97
             DL+    D T              + + HN  ++R   ++   ++  + R++ T    
Sbjct: 407 LDDLIPLESDPTADSCRTGASFKRPRVVIGHNVSYDRARVREQYWLEPTALRFLDTMSLH 466

Query: 98  -----VLAR---TNGLPS-------------SLKNACLALNFSEHLTKMEEGKALIARFC 136
                + +                       SL N                GK L  +  
Sbjct: 467 VCVSGITSYQRAMLRSSKASPTNDSGWREQCSLNNLADVYAL-------YCGKRL-NKSQ 518

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           + +      D  RAN    +     YC  DV AT+ +  +L PL             + +
Sbjct: 519 RDTFVEGTLDEVRAN----FGNLMSYCAEDVRATKAVLVKLWPLFQERFPHPATLAGMLE 574

Query: 197 RGY---RIDLDLVLKLQE------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247
            G     ++      L E       +  E K+L          ++ +  Q Y   ++L+ 
Sbjct: 575 MGSAYLPVNASWNRYLTESDLTYDDLDTEAKQLLTQRADAACALLHN--QAYKRDIWLWD 632

Query: 248 ------ITGIDLVDMSEG 259
                    +     ++ 
Sbjct: 633 QDWSVQELKLKAARKTKA 650



 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 87/350 (24%), Gaps = 27/350 (7%)

Query: 302  DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361
            + R R   Q          SG       LP+      +  +  +      + A       
Sbjct: 910  NNRDRIRGQMVVWLNGNGSSGSDCGAI-LPQVVVCGTLTRRASEPTWMTASNAQ-RERIG 967

Query: 362  DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              +R+ + A  G ++V AD+   E  + + + G+   + +           +     T  
Sbjct: 968  SELRAMVQAPIGYRIVGADVDSQELWIASVL-GDAG-VASCGALHGGTPFGWMTLSGTKA 1025

Query: 422  DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
             +              A+G           A   G   Q   + +K  +      +A S 
Sbjct: 1026 TRTDMHSVTAA-----AVGISRDHAKVINYARIYGAGQQFAERLLKQFNPTISQAEARSK 1080

Query: 482  HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ---EGGSI 538
               M              G     +++ W   H                + +        
Sbjct: 1081 ATKMFSLTK---------GRRLYRLREQWIETHPD--APRHCTQYEALRLARLFNHAIDE 1129

Query: 539  SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598
                             R   I         +   +   +     T     +R +     
Sbjct: 1130 LFYPPQWCGGTESVMFNRLEEIASADRPSTPFLGGRLSRALEPEPTHSGDVDR-FMPTRI 1188

Query: 599  ENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
              +VQ+ + D   ++   M+   ++     L+ HDE+     +       
Sbjct: 1189 NWVVQSGAVDFLHLMLVCMRWLMEDRVRFCLSFHDEVRYLVAEQYAHKAA 1238


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQP-----------LPKVGVWAYAEQA-------------VITLCAYA 36
           +  +  D+ET                + + G+     Q               IT  +  
Sbjct: 408 LKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQK 467

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRW 93
             DE    W+          + + ++D   + VAHN+ F+    ++              
Sbjct: 468 MIDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 520

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEH 121
           I T  ++R         SLKN          
Sbjct: 521 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYD 551


>gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1]
 gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1]
          Length = 395

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 54/208 (25%), Gaps = 32/208 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL- 61
            + +D E        +   +       + L   A + E     D   +    + LL  L 
Sbjct: 29  YVVVDTE------FMRESTYW----PDLCLIQIA-NSEEAAAIDPKAKDIDLTPLLDLLV 77

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +E V+ V H    +  +     G          T V A   G           + +S  
Sbjct: 78  ENEEVLKVFHAGGQDLEIVHNLTGKT--PYPLFDTQVAAMAMG-------LGEQIGYSNL 128

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           +  M            G         T        +   +Y   DV     +F R++   
Sbjct: 129 VETML-----------GIKLDKGARFTDWARRPLDKRQIDYAIGDVTHLSAIFPRMLERL 177

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKL 209
                   LD  +   G       + +L
Sbjct: 178 RKSGRGGWLDNEMERLGDPASYANLPEL 205


>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A       I      L    +  D   +L   T +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|262212061|gb|ACY35647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212137|gb|ACY35685.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212159|gb|ACY35696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       +     E +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSAKAKKRGKEIREAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E    + + G  
Sbjct: 117 IDGLDKLLAAIKTASERGFIEAIDGRK 143


>gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51]
 gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51]
          Length = 381

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLLERVTQAGWWE-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|195586140|ref|XP_002082836.1| GD25020 [Drosophila simulans]
 gi|194194845|gb|EDX08421.1| GD25020 [Drosophila simulans]
          Length = 860

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 569 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 628

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 629 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 685

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 686 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 737

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 738 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 770


>gi|195347186|ref|XP_002040135.1| GM15515 [Drosophila sechellia]
 gi|194135484|gb|EDW57000.1| GM15515 [Drosophila sechellia]
          Length = 1035

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 639 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 698

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 699 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 755

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 756 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 807

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 808 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 840


>gi|38681451|gb|AAB49975.2| egalitarian [Drosophila melanogaster]
          Length = 993

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 560 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 619

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 620 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 676

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 677 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 728

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 729 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 761


>gi|229472613|gb|ACQ72821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 13/140 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    AS G  +V ADL+GIE R+LA          A  +             +      
Sbjct: 13  RRLFCASPGHIMVGADLSGIELRMLAHY-------LARYDDGRYGDILLHGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L       K     + +  A      
Sbjct: 66  IGISRRLVKTVTYASLYGAGDQRI---GESYDQSLPPDKAKQKGKEIRQAYMDAIPGLEK 122

Query: 485 MQD---QYPEFAVKDKLIGT 501
           + +   +  +      + G 
Sbjct: 123 LVEATKKAADRGFIRSIDGR 142


>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
 gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
          Length = 415

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 66/273 (24%), Gaps = 43/273 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDLLQY 60
             ID E        +   + Y+ +A +     A       +               + Q 
Sbjct: 50  FAIDAE--------RASGFRYSNRAYLVQIRRA-GAGTALIDPVNHGGSPIDTLEPVAQT 100

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS 119
           L D+    V H +  +     +   I +   +   T +  R  G    +L      L   
Sbjct: 101 LADDE--WVLHAADQDLPCLAE---IGLRPGKLYDTELAGRLAGFERVNLAAMVQRL-LG 154

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
             L K   G        +                  W     Y   DVE   EL   +  
Sbjct: 155 LQLMK---GHGAADWSKRPL-------------PDEW---LNYAALDVEVLLELRHAIAA 195

Query: 180 LSDGERDLWLLDQTINDRGYRI----DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           + + +       Q        +      D   +   +      +    + +L       +
Sbjct: 196 VLEEQGKTEWAAQEFEHLRTYVAQPTRRDRWRRTSGIHKVRNPRALAAVRELWTTRDNIA 255

Query: 236 RQTY-ALRMYLFLITGIDLVDMSEGTLKSILSH 267
           R    A    L     I+   +   T   + + 
Sbjct: 256 RSRDIAPGRILPDAAIINAATVDPKTTAELTAL 288


>gi|163735131|ref|ZP_02142567.1| ribonuclease D [Roseobacter litoralis Och 149]
 gi|161391589|gb|EDQ15922.1| ribonuclease D [Roseobacter litoralis Och 149]
          Length = 387

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD    + D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAMPGEDDSTGCIVDPLVPGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F   +  ++  +    T V A   G          
Sbjct: 67  EPLYALFRDTSVVKVFHAARQDLEIF--YVDAEVFPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ R  K  +D        +           Y   DV   R+++
Sbjct: 118 QVGYET----------LVRRIAKQPLDKTSRFTDWSRRPLTDAQMK-YALADVTHLRDVY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EFLAEKLEETGRSRWV 182


>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/429 (9%), Positives = 116/429 (27%), Gaps = 52/429 (12%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   +   +        +   L     +  ++ V H +  +    ++  G+ I   
Sbjct: 238 LIQLSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYI--V 295

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T   +               L   ++  +      L++ +CK S D          
Sbjct: 296 NLFDTFHAS-------------KELQLMQNSFQF-----LLSEYCKKSTDKTYQTADWTQ 337

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI-----NDRGYRIDLDLV 206
                ++   Y + D      ++ R+                I          R     +
Sbjct: 338 RPLPDEMIK-YAQIDTHYLLYIYDRMRQDLKKLNKPNDNISNIPNYYLEAVLKRSKETAL 396

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----------- 255
              ++ +  + + L   + K    +   S +     + L    GI               
Sbjct: 397 KIYKKPLQDQDQSLQTILNKQDRRMEAKSFELMVRLLELREELGIKHDQNPRYFLPNPFL 456

Query: 256 -----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
                    T++ + S     +   +++ + L      +L+ +     V+    ++   Q
Sbjct: 457 FKIVESKPTTIQELKSQLGGDKNIHEVVKDNLWQFLKVLLEFDEKIPTVNI---IQEEQQ 513

Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370
                +           Q  P +    ++  + ++  N+     +      + ++S    
Sbjct: 514 NTTQIQNDEV---QPNFQVEPLKIVQFQVNIKKLKNQNKCIVENNLKNENVELIKSQFYC 570

Query: 371 SNGKKLVVADL----AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426
            +  KL+        + I   +      +   I+     +   + T        +D+ + 
Sbjct: 571 ESPFKLLNVFYEGLGSQIFQSMKEQSQQQKQLIEETQQQKIEKINTSDFIKLPKLDEPNH 630

Query: 427 EQRAIGKVM 435
           +Q+    V 
Sbjct: 631 DQKNDLDVR 639


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 41/149 (27%)

Query: 1   MSKLFI-DIETRSPQPLP----KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           + ++ + D+ET    PL     ++G+    +   I           +          +P 
Sbjct: 2   IKEIVVCDLETTGLDPLSDRIIEIGLVR-LKDLKIV---------DIYHTMVNPGRPLPL 51

Query: 56  DLLQY--LRDET----------VMCV----------AHNSLFERILFKKTLGIDIPSKRW 93
            +     L D               V           HN  F+        GI   +  +
Sbjct: 52  KIKNLTGLDDSDLASAPAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAGGISFKNPAY 111

Query: 94  ICTSVLARTN---GLPSSLKNACLALNFS 119
             T  LAR          L++ C  LN  
Sbjct: 112 -DTVELARLAVPGLPTYRLESLCERLNVE 139


>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 396

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 69/273 (25%), Gaps = 49/273 (17%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + L   A   E V L D        + L
Sbjct: 32  FVTIDTEFVRERTYW---------------PELCLVQLA-GTEDVVLIDTLAPGIDLAPL 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L       V H +  +  +F      D        T V A   G             
Sbjct: 76  GALLAKPDCTKVFHAARQDLEIFLHIF--DRLPASVFDTQVAAMVAGFG----------- 122

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +       G        K    S       +    A      Y   DV   R ++  L
Sbjct: 123 -DQVGYDSLVGAITGRSIDKAHRFSDWSARPLSKAQIA------YAATDVTHLRTVYDAL 175

Query: 178 IPLSDGERDLWLLDQTI----NDRGYRIDLDLVLKLQEL--IAQERKKLDEDIVKLTDGI 231
                 +  L   D        ++ +R D   + +  +     +    +  ++    +  
Sbjct: 176 RKQLAEQDRLHWADSEQAILTEEKTFRPDPRRLWEKLKARTSNRRMLGILREVTAWREQE 235

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
            +++         +   + +++  +   T++++
Sbjct: 236 AQNADIPRQ--RVIRDESLLEIAAVHPDTVEAL 266


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQP-----------LPKVGVWAYAEQA-------------VITLCAYA 36
           +  +  D+ET                + + G+     Q               IT  +  
Sbjct: 409 LKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQK 468

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRW 93
             DE    W+          + + ++D   + VAHN+ F+    ++              
Sbjct: 469 MIDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 521

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEH 121
           I T  ++R         SLKN          
Sbjct: 522 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYD 552


>gi|326536842|ref|YP_004301274.1| hypothetical protein 65p438 [Aeromonas phage 65]
 gi|312263188|gb|ADQ53444.1| conserved hypothetical protein [Aeromonas phage 65]
          Length = 318

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 34/206 (16%)

Query: 1   MSK----LFIDIETRSPQP------LPKVGVWAYAEQAVITLCAYAW-DDEPVKLWD--- 46
           M      L +DIET              VG+    +   +   A  W D + +   D   
Sbjct: 55  MKTGPRVLVLDIETAPVLAHVWRLFKTNVGLNMIDQDWYMLSFAAKWFDSDEIIYMDQRN 114

Query: 47  ---RTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKK----TLGIDIPSKRWICTS- 97
                + S M   L + L +  ++    N   F+    +              + I T  
Sbjct: 115 AKNVEDDSDMLKVLWELLDEADIVLH-QNGKRFDIPKIRARMIFHNMKPFSGVKHIDTLE 173

Query: 98  VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
           +  RT G  S+       L +       +  K+  A+F         +    A +++AWQ
Sbjct: 174 IAKRTFGFTSN------KLEYMTDTLCSDTKKSKHAKFPG----FELWKECLAGNMEAWQ 223

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDG 183
              +Y   D+ + +EL+ +L P SD 
Sbjct: 224 EMEDYNIGDIVSLQELYVKLSPWSDR 249


>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 235

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-------AYAWDDEPVKLW-------- 45
           M ++  D ET               E   I +         +     P  +         
Sbjct: 1   MREIIFDTETTGLN----KESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAI 56

Query: 46  ---------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                    D  +   +   LL ++ D T+  VAHN+ F+        ++     I S  
Sbjct: 57  HGLTNERLKDEKKFDDIVDALLDFIDDATI--VAHNANFDIGFLNAELERVNKPLINSDN 114

Query: 93  WICTSVLARTNGL--PSSLKNACLALNFS 119
            I T  +AR      P+SL   C      
Sbjct: 115 VIDTLSIARRRFPMGPNSLDVLCKRFGID 143


>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
 gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|115387355|ref|XP_001211183.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
 gi|114195267|gb|EAU36967.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
          Length = 1131

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 62/295 (21%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 693 GSELKAMIKAPPGYVFVGADVDSQELWIAS-LIGDAQFQIHGGNAIGFMTLEGSKAAGTD 751

Query: 421 IDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +               
Sbjct: 752 MHSRTAHILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMTERETQ----------- 800

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                      +      K+         +         G      +  E FA   +   
Sbjct: 801 -----------EVASNLYKETKGTRTTRRILSEGPFWRGGTESFVFNKLEEFAEQERPRT 849

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                 +              +                                      
Sbjct: 850 PTLGAGITEALMRRFINKGSFMTSR----------------------------------- 874

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 875 -INWAIQSSGVDYLHLLIVAMDYLIRRFNIQARLAITVHDEIRYLVKDEDKYRAA 928


>gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36]
 gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36]
          Length = 385

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 43/201 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD    L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAMPGTDDSNAVLVDPLSEGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F   +   +  +    T V A   G          
Sbjct: 67  DPLYTLFRDTSVVKVFHAARQDLEIF--YVDAGVFPEPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K       K S  +       ++         +Y   DV   R+++
Sbjct: 117 ----EQVGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQ------AKYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLLDQTIN 195
           + L    +       + + + 
Sbjct: 167 EFLARKLEQTGRARWVQEELE 187


>gi|221468312|ref|NP_726360.3| egalitarian [Drosophila melanogaster]
 gi|220902361|gb|AAF47054.4| egalitarian [Drosophila melanogaster]
          Length = 1004

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 571 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 630

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 631 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 687

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 688 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 739

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 740 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 772


>gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
 gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
          Length = 195

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 37/128 (28%)

Query: 1   MSKLFIDIE------------TRSPQPLPKVG-------------VWAYAEQAV-ITLCA 34
           M K+FID E            T     +   G             V    E A  I   +
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINSKGEERVSFSKNFFFDVDYIEESAEAIHGFS 60

Query: 35  YAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
                E +K+    ++   + S++   L+D   + +AHN  F+R      F +   I+  
Sbjct: 61  V----EKLKILSNGKKFKDLASEISSDLKDG--IFIAHNVNFDRKFVTAEFNRLDDINWI 114

Query: 90  SKRWICTS 97
            K + CT 
Sbjct: 115 PKEFFCTM 122


>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
 gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
          Length = 381

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 90/312 (28%), Gaps = 23/312 (7%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +     +       + L    +D E V L D  E +   S  +Q L +
Sbjct: 36  IALDTE-----FVRTKSFY-----PKLGLIQL-YDGEQVSLIDPFELNDF-SPFIQLLAN 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + V  V H    +  +F+            + T ++A       +       L       
Sbjct: 84  QKVTKVLHACSEDLEVFQHYFQQ--LPTPMLDTQIMAAFL-QHGNSIGLATLLKH-YFKL 139

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           ++++G +      +   D   +          W L   Y +   +  +  ++  +  +D 
Sbjct: 140 EIDKGISRTNWLARPLSDVQLH----YAAADVWYLLPLYQRMQQKLAQTSWQSAV-QNDC 194

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L    Q  +       +    KL        K L +   +       +         
Sbjct: 195 ENLLKKYTQIKDSNNAYFSISGAWKLNSQELMRLKLLAKWRQEEAIKRNLALNFVIRAEH 254

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            + L         +   L   LS   +    K ++     ++ +           V+ D 
Sbjct: 255 LILLAQH--NPKYTSQLLSIGLSLLEVRIHGKKILQLLEKANKAPAYDYPPPILRVTDDH 312

Query: 304 RLRGTLQFYGAS 315
           R R  ++   A+
Sbjct: 313 RYRVAIKLLQAT 324


>gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 245

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 36/156 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--------------- 45
           M ++ +D ET     L         E A + LC   +       +               
Sbjct: 1   MRQIVLDTETTG---LECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPERESDEGALQVH 57

Query: 46  --------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-DIP-----SK 91
                   D+ +   +  + L ++ D     + HN+ F+       LG+ ++        
Sbjct: 58  GLTMEFLQDKAKFYEISREFLNFISDAE--LIIHNAPFDVGFLNHELGLCNLKALDNYCS 115

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
           +   T  LA+        +L   C   N      K+
Sbjct: 116 QITDTLKLAKELHPGKRNNLDALCERYNIDNSKRKL 151


>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
 gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
          Length = 883

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 19/173 (10%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   + D  E  +    L +   + +++ V H +  +    +K  G+ I   
Sbjct: 324 LMQISTRTED-YIIDVLELRSNLYILNESFTNPSIIKVFHGADSDIEWLQKDFGLYI--V 380

Query: 92  RWICTSVLARTNGLP-SSLKNACLAL--------------NFSEHLTKMEEGKALIARFC 136
               T   AR   L   SL +                          +M E   +   + 
Sbjct: 381 NMFDTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMLEYARVDTHYL 440

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
               D        A + Q   L     +R  +   + F +LI   +   DL+ 
Sbjct: 441 LYIYDKMRIALLDAANGQP-NLLQLVWQRSKDICLKRFTKLIFTEESYLDLYQ 492


>gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
 gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
          Length = 385

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 43/201 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD    L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAMPGTDDSNAVLVDPLSEGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F   +   +  +    T V A   G          
Sbjct: 67  DPLYTLFRDTSVVKVFHAARQDLEIF--YVDAGVFPEPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K       K S  +       ++         +Y   DV   R+++
Sbjct: 117 ----EQVGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQ------AKYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLLDQTIN 195
           + L    +       + + + 
Sbjct: 167 EFLARKLEQTGRARWVQEELE 187


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE-----PVK---------L 44
            +  DIET    P    + ++G      + +I   +   + E      +          +
Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDEFSVFINPEIDIPEEITALTNITNDMV 471

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLAR 101
            D  +   +    L++ +D TV  VAHN+ F+        K LG++      I T   AR
Sbjct: 472 KDAEKVETVLPKFLEFCKDTTV--VAHNAKFDVGFINQKAKNLGLEYSP-SVIDTLHWAR 528

Query: 102 TNGL---PSSLKNACLALNF 118
                     LK      N 
Sbjct: 529 ILLPEQKRFGLKYIANYFNV 548


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 47/156 (30%)

Query: 1   MSKLFIDIETRSPQPLPKVGV------------------WAYAE---QAV-----ITLCA 34
           M ++ +D ET   +      V                    Y             +T   
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDCDFEPGAQEVTGLT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLR--DETVMCVAHNSLFERILFKK-------TLG 85
             +           ++      + ++L   D   + + HN+ F+             + G
Sbjct: 61  LEF---------LADKPEFHEVVDEFLEFIDGAELVI-HNASFDLGFLDYELSRLGESYG 110

Query: 86  IDIPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
             +     + T +LA  R  G  +SL   C  L   
Sbjct: 111 CILDRASVVDTLLLARERFPGQRNSLDALCKRLGVD 146


>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
          Length = 860

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 16/117 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             + +D+E             +Y     IT L   +  D    + D        S L + 
Sbjct: 278 RYIAVDLE-----------HHSYRSFLGITCLIQISTLDTD-YIIDALALHDHLSILNEV 325

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
             D  ++ V H S  + +  ++  G+ +       T V AR       SL       
Sbjct: 326 FTDPKIVKVFHGSDSDLMWLQRDFGVYV--VNLFDTGVAARLLQHGRFSLSYLLQRY 380


>gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120]
 gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120]
          Length = 302

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 41/193 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWDRTEQSAMPSDL 57
            L+ID E               +    ++L     D      + V L D  +Q  + +D 
Sbjct: 22  TLWIDTE----------VADYKSRNPRLSLIQVLDDPNDMSGDRVYLLDVLDQPDLVADF 71

Query: 58  LQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----RTNGL--PSSLK 110
           +   + +  +  V HN+ F+  L          ++   CT  +A              L+
Sbjct: 72  VDKIMVNTNIEKVFHNANFDVKLLGNK-----QARNITCTLEIAKKIPYYLLPVQNYQLQ 126

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +    L NF+                 +    +          ++   L   Y  +    
Sbjct: 127 SLAKLLCNFNNI-------------DKQEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRR 173

Query: 170 TRELFKRLIPLSD 182
             EL     P  +
Sbjct: 174 LLELQIESNPDPE 186


>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
 gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
          Length = 518

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 52/181 (28%), Gaps = 27/181 (14%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D          L +   +  ++ V H +  + +  ++  G+ +       T   AR 
Sbjct: 62  YVVDTLALRHELHLLNEVFANPKIIKVLHGADMDVLWLQRDFGLYL--VGLFDTGQAARV 119

Query: 103 NGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
            G+   SL          +   K +     I                        ++   
Sbjct: 120 LGMAHLSLAFLLRHYCHLDTDKKFQLADWRIR-------------------PLPLEMIK- 159

Query: 162 YCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           Y + D      ++  +   L      L  L  ++  R  ++    + + ++ +  E   L
Sbjct: 160 YAREDTHYLLHVYDLMRRDLLAKGNQLNNLLHSVFQRSKQV---CLKRYEKPLYTEDSYL 216

Query: 221 D 221
           +
Sbjct: 217 E 217


>gi|302544332|ref|ZP_07296674.1| putative DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302461950|gb|EFL25043.1| putative DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 241

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 79/321 (24%), Gaps = 103/321 (32%)

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
           +A  G +LVVAD   +E RVLA I+ +   ++    G D+Y     +AF    D      
Sbjct: 1   VADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGTGRDLYAELSDRAFAGRRD------ 54

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
               K+  L   Y              G  L+  +                         
Sbjct: 55  --QAKLALLGAVY----------GQTSGDGLKHLAAL----------------------- 79

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                                 R +            +  A   +EG  +        P 
Sbjct: 80  ----------------------RRRFPA----AVAYVDDAARAGEEGRLVRTWLGRTCPP 113

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                        LP        D+  +  Y +T +++       G      +VQ  + D
Sbjct: 114 AGGAATDPADEAGLP-------RDLDEEPRYGSTPSARAR-----GRFTRNFVVQGSAAD 161

Query: 609 ILCEGMKNATKNGYDI------------VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655
                                       V   HDE++   P+    +V   +        
Sbjct: 162 W------AVLMLAALRRALAAAGLRAELVFFQHDEVIVHCPEPEVAAVRQAIAEAGEVAG 215

Query: 656 SWAKG-----LPLKAEGYEAK 671
           + A G      PL     E  
Sbjct: 216 TIAFGTTPVRFPLTVAAVECY 236


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 45/227 (19%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D  +    P  + +   D     + VAHN+ F+    +   ++ G +      I T  LA
Sbjct: 467 DMVQGQPDPEVITKRFVDWCGDSILVAHNASFDMGFLEATLRSGGHEPDDYPVIDTLELA 526

Query: 101 RTNGLP---SSLKNACLA-------------------------LNFSEHLTKMEEGKALI 132
           RT         L                               L+ ++ + +M   ++L 
Sbjct: 527 RTLMPTLKNHRLNTLAKRFDIELTQHHRAIYDAEATAYLLMKLLDLAKQMFEMTTHRSLN 586

Query: 133 ARFCKGSIDSPPYDCTRAN---HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
           A+         P+  T            L+       ++    + +         R+  L
Sbjct: 587 AKVGSDVSKIRPFHATIYAKNKKPGLRHLYELISLSHIDYLYRMARMPRSELVKRREG-L 645

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L  +  D G   D          + +   +L++ +       I    
Sbjct: 646 LIGSACDNGEIFD--------AALNKSDDELEKMMSFYDFIEIHPPA 684


>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
 gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
 gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus]
          Length = 702

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   +  +   L     +   +          H   +               EL++
Sbjct: 410 Y----CSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMR--------LELWE 457

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        + +W   + I 
Sbjct: 458 RGNEQPTQLQVVWQRSRDIC 477


>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
 gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
          Length = 374

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L       +   +     Q   P    + L 
Sbjct: 27  YLALDTE-----FMRVDTFYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 75  DERVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 119

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 120 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 173 LSEEKRAWLL 182


>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
 gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
           26695]
          Length = 350

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    P+    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|262342285|gb|ACY54653.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +    NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARCDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|167600409|ref|YP_001671909.1| DNA polymerase part III [Pseudomonas phage LUZ24]
 gi|161168272|emb|CAP45437.1| DNA polymerase part III [Pseudomonas phage LUZ24]
          Length = 93

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 14/89 (15%)

Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDI------VLTVHDEIVSETPDTPYFSVGTLCS 649
           K    ++QA    ++   M    +    +      VL +HDE   E        +  L  
Sbjct: 4   KALNTLLQAAGAIVMKWAMVLLDERVRRLNLRAWKVLDIHDEGQWECHPED---LKALRE 60

Query: 650 LMTKNPSWAKGL-----PLKAEGYEAKRY 673
            M      A  L     PL ++    + +
Sbjct: 61  QMEICVRDAGELLGVNCPLASDSIAGRSW 89


>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
 gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
          Length = 310

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 39/146 (26%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55
           L ID ET          +        +   A+++D    ++++            + +  
Sbjct: 40  LVIDTETTGLDTTADTII-------ELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSD 92

Query: 56  DLLQY------------LRDETV--------MCVAHNSLFERILFKKTLGIDIPSKRWIC 95
            + Q             L D  +        + +AHN+ F+R + ++ L +    K W C
Sbjct: 93  VVKQLTGISDAMVAGQRLDDAEIETWLKKADLLIAHNAAFDRPMLERRLPLA-AEKNWAC 151

Query: 96  TSV---LARTNGLPSSLKNACLALNF 118
           T               L      L +
Sbjct: 152 TFCDINWDAEGIASRKLDYIACRLGY 177


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQP-----------LPKVGVWAYAEQA-------------VITLCAYA 36
           +  +  D+ET                + + G+     Q               IT  +  
Sbjct: 387 LKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKHQFFIKPTGKIPSAITKITGISQK 446

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRW 93
             DE    W+          + + ++D   + VAHN+ F+    ++              
Sbjct: 447 MIDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 499

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEH 121
           I T  ++R         SLKN          
Sbjct: 500 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYD 530


>gi|262342273|gb|ACY54647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342305|gb|ACY54663.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342315|gb|ACY54668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342327|gb|ACY54674.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342329|gb|ACY54675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +    NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARCDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212223|gb|ACY35728.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLAKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCA--YAWDDEPVKLWDRT------- 48
           S + ID+ET    P    + ++    Y     I   +        P  + + T       
Sbjct: 33  SYVVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSFITEFTGINEDMI 92

Query: 49  ----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLAR 101
               + S    +   +L+   ++ VAHN+ F+           +       ++ T  L++
Sbjct: 93  KNCNDISQTLKEFDDFLKSGDIL-VAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSK 151

Query: 102 TNG---LPSSLKNACLALNF 118
                     LK+ C   N 
Sbjct: 152 LINQELAHHRLKDLCNQYNI 171


>gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
          Length = 252

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDE--------PVK 43
           M ++ +D ET     L   G     E   + L           + ++           V 
Sbjct: 1   MRQIVLDTETTG---LSAEGGDRIIELGCVELLNRKLSGNNLHFYFNPGRDSHEDALRVH 57

Query: 44  LW------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GIDIPSK 91
                   D+ + + +  ++L YL+      + HN+ F+     K L       +     
Sbjct: 58  GISNEFLRDKPKFAEVAQEILAYLQ--GAELIIHNAAFDVGFLNKELELIGKPALHTFVG 115

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
               T  +A+    G  +SL   C  L   
Sbjct: 116 GITDTLAMAKELYPGKRNSLDALCDRLGVD 145


>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
 gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
 gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A       I      L    +  D   +L   T +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|229472485|gb|ACQ72757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     E +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSAKAKRKGKEIREAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E      + G  
Sbjct: 117 IDGLDKLLAAIKTASERGFIKAIDGRK 143


>gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1]
          Length = 406

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 49/197 (24%), Gaps = 41/197 (20%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + +D E     T                   + L   A   +  +  D        + L
Sbjct: 29  YITVDTEFMREKTYY---------------PQLCLVQLA-GPDEARAVDPLAPGMDLAPL 72

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + + +  V+ V H +  +  +F    G          T V A   G             
Sbjct: 73  FELMANPNVLKVFHAARQDVEIFLHLSGAV--PAPLFDTQVAAMVCGFG----------- 119

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                     G   +A     +        T        +   +Y   DV   R  +++L
Sbjct: 120 -------DSVGYETLASQLAKARIDKSQRFTDWALRPLTEKQVQYALADVTHLRVAYEKL 172

Query: 178 IPLSDGERDLWLLDQTI 194
           +   +    L  L   +
Sbjct: 173 VRKLERNGRLDWLVDEM 189


>gi|33589402|gb|AAQ22468.1| RE33408p [Drosophila melanogaster]
          Length = 1004

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 571 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 630

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 631 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 687

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 688 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 739

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 740 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 772


>gi|326472602|gb|EGD96611.1| DNA polymerase gamma [Trichophyton tonsurans CBS 112818]
          Length = 1140

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 76/338 (22%), Gaps = 69/338 (20%)

Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377
           GR      +   +  Q      +T+                     +++ + A  G   V
Sbjct: 660 GRELSPDSKVGFILPQVIPMGTITRRAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFV 719

Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGK 433
            AD+   E  + + + G+        N          KA  T +   +       R   K
Sbjct: 720 GADVDSEELWIAS-LVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAK 778

Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493
           V      Y  G K   T+       + +                        +    +  
Sbjct: 779 VFNYGRIYGAGLKFAATLLRQFNPSMSEAE---------------------TKAVAAKLY 817

Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553
            + K   T   ++ +    +  G      +  E FA   +    +    +          
Sbjct: 818 KETKGTRTTRRILSENPFLRG-GTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFIN 876

Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---IL 610
               +                                           +Q+   D   +L
Sbjct: 877 KGGFMTSR------------------------------------INWAIQSSGVDYLHLL 900

Query: 611 CEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
              M            + +TVHDEI     +T  +   
Sbjct: 901 IISMDYLIRRFNLDARLAITVHDEIRYVVRETDKYKAA 938


>gi|229472339|gb|ACQ72684.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 66/273 (24%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA        +  +  G    V           DK+
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY------LARYEGGRYGDVLLNGDIHQENADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 67  -GISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +  + M          +     +  +HDE
Sbjct: 160 SAGCVAKQWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|229472245|gb|ACQ72637.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 104 ----------------DKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
 gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
          Length = 241

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 41/161 (25%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGV-------------WAY--------AEQAVITLCA 34
           M ++ +D ET      S   + ++G                Y        AE   +    
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPERSMPAEAFSVHGIG 60

Query: 35  -------YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI- 86
                     +   V L D+   + +    L +++D     V HN+ F+       L   
Sbjct: 61  PDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFVQDSR--LVIHNASFDMKFLNAELDWM 118

Query: 87  ---DIPSKRWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
               +P  + + T  +A  R  G P++L   C   N     
Sbjct: 119 GLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTN 159


>gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516]
 gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516]
          Length = 385

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 43/200 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+  +      L D  E     
Sbjct: 22  YVTVDTEFLRERTYY---------------PHLCLVQLAYPGDGKTDAVLVDPLEGGLDL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L    +D  V+ V H +  +  +F    G  +  +    T V A   G          
Sbjct: 67  APLYALFQDHGVVKVFHAARQDLEIF--WHGGQVIPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ +  + ++D        +    + +    Y   DV   R ++
Sbjct: 118 QVGYET----------LVRKIARENLDKSSRFTDWSRRPLS-EAQKRYALADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLLDQTI 194
           + L    D    +  L + +
Sbjct: 167 EELKAELDKSGRIKWLAEEM 186


>gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
 gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
          Length = 177

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 21/139 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC----AYAWDDEPVKLW---DR 47
           M+ L +D ET S +P   V +         I      L     ++++ +  +      D 
Sbjct: 1   MNFLAMDFETASSEPWSAVSLGLTIVRDNQIAQNWYSLIKPETSFSYWNTEINGLTADDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
            +    P        L D+  + V HN  F+  + K   K  G+  P    + T  L+R 
Sbjct: 61  LDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTVSLSRK 120

Query: 103 NGLP---SSLKNACLALNF 118
                    L      L  
Sbjct: 121 FQPGMVNHKLDTVVSDLGL 139


>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
 gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    P+    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|296809768|ref|XP_002845222.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
 gi|238842610|gb|EEQ32272.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
          Length = 1133

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 72/269 (26%), Gaps = 8/269 (2%)

Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           A  +G+      +   +  Q      +T+                     +++ + A  G
Sbjct: 648 AESSGKGLSSNSKLGFILPQVIPMGTITRRAVENTWLTASNAKPNRVGSELKAMVRAPPG 707

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQR 429
              V AD+   E  + + + G+        N          KA  T +   +       R
Sbjct: 708 YVFVGADVDSEELWIAS-LVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISR 766

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              KV      Y  G K   T+       + +      +   +++ +   +    + +  
Sbjct: 767 NNAKVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRMLSENP 826

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                 +  +    E   +  R        L   +TE         GS    R+    + 
Sbjct: 827 FLRGGTESFVFNKLEEFAEQER---PRTPVLGAGITEALMRRFINKGSFMTSRINWAIQS 883

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +   + I +    R    D +   +
Sbjct: 884 SGVDYLHLLIISMDYLIRRFNLDARLAIT 912


>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
 gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
          Length = 386

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 48/198 (24%), Gaps = 41/198 (20%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             + +D E     T                 A + L   A   +     D        + 
Sbjct: 21  RYVAVDTEFMRDKTYY---------------AKLCLVQLA-GADEAVAVDTLAPGIDLAP 64

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L   + +  V+ V H +  +  +F      D        T + A   G            
Sbjct: 65  LYALMANPDVLKVFHAARQDVEIFVHQA--DAVPAPLFDTQIAAMVCGFG---------- 112

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                          + R   G         T  +H        EY   DV   R  +++
Sbjct: 113 --------DAVSYDRLVRGLTGVKLDKTSRFTDWSHRPLSSRQIEYALADVIHLRPAYEK 164

Query: 177 LIPLSDGERDLWLLDQTI 194
           L    +    L  L + +
Sbjct: 165 LHRKLEKTGRLEWLSEEM 182


>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus]
          Length = 886

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 48/179 (26%), Gaps = 22/179 (12%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L +   D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESFTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKR 409

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                   +  +   L     +   +          H   +               EL++
Sbjct: 410 Y----CSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMR--------LELWE 457

Query: 176 RLIPLSDGERDLWL----LDQTINDRGYRIDLDLVL---KLQELIAQERKKLDEDIVKL 227
           R        + +W     +      +    D   +    K ++ +  ++    + +   
Sbjct: 458 RGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAW 516


>gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
 gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
          Length = 385

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 53/201 (26%), Gaps = 43/201 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD    L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAMPGTDDSNAVLVDPLAEGISL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD +V+ V H +  +  +F   +  ++  +    T V A   G          
Sbjct: 67  EPLYTLFRDTSVVKVFHAARQDLEIF--FVDAEVFPEPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K       K S  +        +          Y   DV   R+++
Sbjct: 117 ----EQVGYETLVRKIAHQALDKTSRFTDWSRRPLTDAQ------KTYALADVTHLRQIY 166

Query: 175 KRLIPLSDGERDLWLLDQTIN 195
           + L    +       + + + 
Sbjct: 167 EFLARKLEETGRARWVAEELE 187


>gi|74195213|dbj|BAE28339.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 87/339 (25%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 819  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIA 877

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 878  AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQ 937

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L +     K+   +   +    + L    +          +     L
Sbjct: 938  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGE---------WLVKQLNL 988

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L + +    +   +      A   A           +   I +  +
Sbjct: 989  PVDRTEDGWVSLQDL-RMIRREASRKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDT 1047

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
             R          +   +                  +VQ+ + D   ++   MK   +   
Sbjct: 1048 PRTPVLGCCISRALEPSVVQGEFITSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1102

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1103 IDGRFCISIHDEVRYLVREEDRYHAALALQITNLLTRCM 1141


>gi|307198047|gb|EFN79100.1| Exonuclease 3'-5' domain-like-containing protein 1 [Harpegnathos
           saltator]
          Length = 831

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 69/283 (24%), Gaps = 40/283 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYL 61
           +  D E      L   G         +TL           ++D     ++     L + L
Sbjct: 421 ISFDCE---GINLGVKG--------QLTLVQIGTMSGQAYVFDLFTCPSLVQAGGLQKLL 469

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----------PSSLK 110
             + V+ V H+   + +       I +       T                      +L 
Sbjct: 470 EHKNVVKVIHDCRNDSVNLYNQFKIML--TNVFDTQAAHAVLQFQETGKPVYKVKNVNLN 527

Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE--YCKRDVE 168
             C       +  K +  K +  +  +     P                    Y      
Sbjct: 528 TLCDHYGAPCNPLKEQL-KNIYRKDQRYWSRRPMTRDMLIYASSDVLSLVPQVYNAMSRL 586

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
              E+      L + +         ++ R   +      K Q  +  E   L + + + T
Sbjct: 587 IKPEIQGLFAELCEEQ-------IQMHIRPAEV---KARKKQRKVETEVADLKKRMEEAT 636

Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-DMSEGTLKSILSHSNI 270
              I  S +   L  YL L          S    K +    N+
Sbjct: 637 SKNIVLSNREIRLLRYLDLTEDEKEKLKGSYKVAKKLEKLENM 679


>gi|229472363|gb|ACQ72696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL-- 105
             +      Y  D   + VAHN+ F+       + + G+    +  + T +L+       
Sbjct: 586 DTVLPAFRAYCAD--TVLVAHNAAFDMRFLQLKEASTGVRFD-QPVLDTLLLSAVLHPNQ 642

Query: 106 -PSSLKNACLALNFSEH 121
               L+     L  +  
Sbjct: 643 ESHRLEAIAERLGVTII 659


>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
          Length = 284

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E        +  +  Y     ++L   ++  E   + D        S + + +
Sbjct: 22  KFIAVDTE------FIRNNLIYY---PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKIM 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ +  V H+   +                   T V A                     
Sbjct: 72  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFC-----------HYYHDFI 118

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    IA     + +S       +           Y   DV    +L++ L   
Sbjct: 119 GYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCNK 172

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 173 LEENNRMGWFQEEME 187


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           D  PV +   TE+          +  +L + L D   + VAHN+ F+  +  +       
Sbjct: 69  DPGPVWIHGLTEEVLEGAPRFPEIAGELAERLAD--RVLVAHNAAFDWSMLAREYARSKS 126

Query: 90  SKRWI---CTSVLARTNGLP---SSLKNACLALNF 118
           +       CT  L++  GLP     L+        
Sbjct: 127 AAPVRQRLCTIALSKELGLPLPNHKLETLAAHYGV 161


>gi|1129171|emb|CAA88012.1| mitochondrial DNA polymerase gamma [Schizosaccharomyces pombe]
          Length = 1018

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 75/286 (26%), Gaps = 63/286 (22%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +++ I A +G   V AD+   E  ++A + G+       A    +      K+
Sbjct: 658 KNRLGSELKAMIRAPDGYTFVGADVDSEELWIVA-LMGDSQFRLHGATALGMMTLEGKKS 716

Query: 417 FNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T +   +       R   KV      Y  G K    +       L+       +   +
Sbjct: 717 EGTDLHSKTAAILGVSRDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLY 776

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              +  +S       +                            +    +          
Sbjct: 777 ASTKGVKSKMSKRLQEMG-----------------------LPKLTFWSQGTES------ 807

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                +K +    LPS R         D       +S+ + + +
Sbjct: 808 ------------------FVFNKLEAMAQLPSPR-----TPVLDAGIQQALSSKNLSKNS 844

Query: 593 YGGKLTENIVQAISRD---ILCEGMKNATKN---GYDIVLTVHDEI 632
           +        +Q+ + D   +L   M +  K       + LTVHDE+
Sbjct: 845 FMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDEV 890


>gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12]
 gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12]
          Length = 323

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    P+    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|291279950|ref|YP_003496785.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
 gi|290754652|dbj|BAI81029.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
          Length = 927

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 29/194 (14%)

Query: 4   LFIDIET-RSPQPLPKVGVWAYAEQAVI-TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           +  DIET  S      VG W  A +  I  L AY++ +    ++D        SD    L
Sbjct: 749 IIFDIETKYSADD---VGGWKNAHKMGIAILVAYSYKNNKYFIYD----EKNISDFKSLL 801

Query: 62  RDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            D++ + +  N   F+  +    +  D      +          L           +   
Sbjct: 802 -DKSKVIIGFNIINFDLKVLTPYIKFDFKETYILD--------ILTEIKNITGRRFSLDN 852

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
             +     K            +      +           EYCK+DV+ T+ +F+  I  
Sbjct: 853 IASSTLNTK----------KSANGLQSIKWFKEGKIDKIIEYCKKDVDITKSIFEYGIKH 902

Query: 181 SDGERDLWLLDQTI 194
                +L  L   I
Sbjct: 903 KKIYCNLKDLKVEI 916


>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
 gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
          Length = 374

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L       +   +     Q   P    + L 
Sbjct: 27  YLALDTE-----FMRVDTFYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 75  DERVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 119

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 120 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 173 LSEEKRAWLL 182


>gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 233

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 60/220 (27%), Gaps = 30/220 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA--YA-------------WDDEPVKL- 44
           M K+ +D ET    P          E A I L     +              D++  ++ 
Sbjct: 1   MRKIVLDTETTGLDPKKG---HRIIEIAAIALEGRKVSKRHFHHYLDPEREVDEDAARVH 57

Query: 45  ---WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
              WD  +  A  +D+     +  +    +AHN+ F+        + LG+       + T
Sbjct: 58  GFTWDMLKGRAKFADIATSFLEFVDGAELMAHNAPFDMSFINNELRLLGLPPLENPVVDT 117

Query: 97  SVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
             +AR         L   C           +  G  L          +            
Sbjct: 118 LKMAREMHPGKKNGLDALCSRYEIDNTHRTLH-GALLDTELLAEVYFAMTRGQESLLGED 176

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 E      +A+R   + L+P  D           I
Sbjct: 177 EPPAAREIAVLSTDASRPTVRVLLPSPDELAVHAQQLLDI 216


>gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908]
 gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908]
          Length = 369

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 83/313 (26%), Gaps = 60/313 (19%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T       ++G+    +   + L       +PV + D +          
Sbjct: 26  LVLDTEFVRTRTFY----ARLGLIQAYDGKTLALI------DPVAVSDLSG-------FW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L + ++  + H+   +  +F +         +   + + A   G    L         
Sbjct: 69  SLLTEPSITTILHSCSEDLEVFAR--NGQCQPVKLFDSQIAAALCGFGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +               T        +    Y   DV    +L+ +L+
Sbjct: 118 ---------GYAKLVEQTLNIPLDKGESRTDWMKRPLSEAQLNYAANDVYYLYQLYPQLV 168

Query: 179 PLSDGERDL-WLLDQTINDRGYRIDLDLVL----------KLQELIAQERKKLDEDIVKL 227
              + +  L W+ ++       R+    +           +L        K L +  +  
Sbjct: 169 EKLEEQNRLGWVFEEGERMTQGRLSPPDLELAYLRVKNAFQLSPKQLAYLKVLAKWRLSK 228

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287
                 +          + L         +   L  ++  +   +      L R      
Sbjct: 229 ALSRDLAVGFVVKDHGLIGLAKKQP---KNSSELYKMIELTEQEKRVHGKDLIR----LL 281

Query: 288 AILKLNTLSEAVS 300
           A   L+ L +A+ 
Sbjct: 282 ATADLDNLPDAID 294


>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
 gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 374

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L       +   +     Q   P    + L 
Sbjct: 27  YLALDTE-----FMRVDTFYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 75  DERVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 119

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 120 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 173 LSEEKRAWLL 182


>gi|63054429|ref|NP_588025.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe 972h-]
 gi|20141418|sp|Q12704|DPOG_SCHPO RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|157310502|emb|CAB76231.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe]
          Length = 1018

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 75/286 (26%), Gaps = 63/286 (22%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +++ I A +G   V AD+   E  ++A + G+       A    +      K+
Sbjct: 658 KNRLGSELKAMIRAPDGYTFVGADVDSEELWIVA-LMGDSQFRLHGATALGMMTLEGKKS 716

Query: 417 FNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T +   +       R   KV      Y  G K    +       L+       +   +
Sbjct: 717 EGTDLHSKTAAILGVSRDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLY 776

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
              +  +S       +                            +    +          
Sbjct: 777 ASTKGVKSKMSKRLQEMG-----------------------LPKLTFWSQGTES------ 807

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                                +K +    LPS R         D       +S+ + + +
Sbjct: 808 ------------------FVFNKLEAMAQLPSPR-----TPVLDAGITQALSSKNLSKNS 844

Query: 593 YGGKLTENIVQAISRD---ILCEGMKNATKN---GYDIVLTVHDEI 632
           +        +Q+ + D   +L   M +  K       + LTVHDE+
Sbjct: 845 FMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDEV 890


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 43/152 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE---QAVITLCAYAWDDEPVKLWDRTEQSAMP--- 54
           ++ +  D ET          V   A       I        D  V          +P   
Sbjct: 271 LNFVVFDTETTGLSVTKDAIVELAAARVLNGRIL-------DGEVFETYVDPGRPIPAAS 323

Query: 55  -----------------SDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSK---- 91
                              ++    D  ++ + VAHN+ F+  L ++    ++ +     
Sbjct: 324 TKIHGVRDADVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQ---EVQTGCSWD 380

Query: 92  -RWICTSVLART---NGLPSSLKNACLALNFS 119
              + T +L+          SL   C  L+  
Sbjct: 381 HPVVDTVLLSALVFGISADHSLDALCSRLSIE 412


>gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
 gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
          Length = 385

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 52/200 (26%), Gaps = 43/200 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+ D   E   L D   +    
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQMAYRDAAGEDAVLVDPLAEGISL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    RD  V+ V H +  +  +F   +   +       T V A   G          
Sbjct: 67  DPLYDLFRDPGVVKVFHAARQDLEIF--HVDAGVIPAPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              +            L+ +  K  +D        +          EY   DV   R+++
Sbjct: 118 QAGYET----------LVRKIAKAEVDKSSRFTDWSRRPLTDAQA-EYALADVTHLRDVY 166

Query: 175 KRLIPLSDGERDLWLLDQTI 194
           + L            + + +
Sbjct: 167 EYLANRLAKSGRTKWVAEEM 186


>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
 gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
          Length = 377

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 77/275 (28%), Gaps = 40/275 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQY 60
            + +D E      +     +  A      L   +  D    L D      +         
Sbjct: 26  FVALDTE-----FMRVDTFYPIAG-----LLQVSGGDG-AYLID---PLRISDWRPFAAL 71

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L    V+ V H+   +  +F +  G          T + A    L  S+      L  + 
Sbjct: 72  LEAPNVVKVLHSCSEDLEVFLRLSGS--LPAPLFDTQLAAGYLNLGFSMGY--SRLVQAL 127

Query: 121 HLTKMEEGKALIARFCKGSID-SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
              ++ +G+       +   +    Y      H+             VE  R L  RL P
Sbjct: 128 LDIELPKGETRSDWLQRPLSELQVRYAAEDVLHL-------------VEVYRALMARLAP 174

Query: 180 LSDGERDL---WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               E  L     L   ++      D     KL   ++++++ +   +    +   R+  
Sbjct: 175 Q-KVEWVLEDGAELVANLSREVAPEDAWREAKLAWKLSRQQQAVLRALCAWREREARARN 233

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
           Q       L   +   L       L ++    ++ 
Sbjct: 234 QPR--NRVLREHSLWPLARTQPDNLVALARIEDMH 266


>gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp]
 gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp]
          Length = 377

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 36/273 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E      +     +  A      L   +   +   L D          L + L+
Sbjct: 26  FVALDTE-----FMRVDTFYPIAG-----LLQVS-GGDKAYLIDPLCIDDW-RPLAELLQ 73

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            +TV+ V H+   +  +F +  G          T V A    L  S+      L  +   
Sbjct: 74  AQTVVKVLHSCSEDLEVFLRLTGS--LPVPLFDTQVAAGYLNLGFSMGY--SRLVQTLLG 129

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            ++ +G+       +                        Y   DV    E+++ L     
Sbjct: 130 IELPKGETRSDWLQRPLS----------------ATQISYAAEDVLHLVEVYQALTQRLS 173

Query: 183 GERDLWLLDQTINDRGYR---IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            E+  W+L+            +D D + +  +L  +  ++    +  L     R +R   
Sbjct: 174 AEKHAWVLEDGAELVAALSREVDPDELWREAKLAWKLSRQQQAVLRALCAWRERQARARN 233

Query: 240 ALR-MYLFLITGIDLVDMSEGTLKSILSHSNIT 271
             R   L   +   L       L ++    ++ 
Sbjct: 234 QPRNRILREHSLWPLARTQPDNLVALARIEDMH 266


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L D   + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIDGADIIIAHNAGFDRPFLERFS-IAFANKPWACS 185


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 22/121 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVIT---------------LCAYAWDD-EPVK 43
           M    ID ET + +      +     +   +                          P  
Sbjct: 1   MKFTAIDFETANEKRNSPCSIGIVVVKDGHVVEKSHHLIRPKEMRFMPINIGIHGIRPAM 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           +    E   +   +  Y  D   + +AHN+ F+  + +K      I++P   +ICT  LA
Sbjct: 61  VEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNIELPEFNYICTMKLA 118

Query: 101 R 101
           R
Sbjct: 119 R 119


>gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218]
          Length = 371

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 13/219 (5%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             + L    +D E + L D        P   ++ L+D +V+ V H    +  +FK + G 
Sbjct: 39  PQLGLIQL-FDGENLSLIDPLAMDEMTP--FVELLQDTSVLKVLHACGEDIEVFKTSFG- 94

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                  + T ++A   G   S   A   L       ++++ ++      +         
Sbjct: 95  -CVPFPMVDTQIMAAFLGYGLSTGFAA--LAHDLLNVELDKSESRTDWLARPLSQ----K 147

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    + L   Y +   + T+  +       + E  +    +T +     +D+   
Sbjct: 148 QLEYAAADVFYLMPMYEQLLEKVTQAGWWE-AAQQESELQVEKRTRTTDPEMVYLDIKGA 206

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            +L+       K L     +       +          L
Sbjct: 207 WQLKPKELAILKPLATWRYQEAMNRDLALNFVIRENDLL 245


>gi|195119063|ref|XP_002004051.1| GI19730 [Drosophila mojavensis]
 gi|193914626|gb|EDW13493.1| GI19730 [Drosophila mojavensis]
          Length = 1143

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 37/295 (12%)

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +RS + A  G KLV AD+   E  + + +       +  A        + +K+  +
Sbjct: 784  IGSELRSMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGS 843

Query: 420  PIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +  ++       R   KV+  A  Y  G +  +T+       L       K+   F   
Sbjct: 844  DMHSITAKVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFAAT 903

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV--LQLWKDLTEGFACVVQ 533
            +    +   +++++ +                         +     W+  TE       
Sbjct: 904  KGKRVY--RLREEFHDEQEDKAYSSYEARRFALQRNRSVSEIFHRPSWQGGTESAMFNRL 961

Query: 534  EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
            E  +   +         + R            R L                         
Sbjct: 962  EEIATREQPETPFLNCRLSRALDSNGEADLEQRFL------------------------- 996

Query: 594  GGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                   +VQ+ + D   ++   M+          L+ HDE+     D       
Sbjct: 997  -PTRINWVVQSGAVDFLHLMLVSMRWLLGPHARFCLSFHDELRYLVKDEMAPKAA 1050


>gi|194885564|ref|XP_001976457.1| GG20003 [Drosophila erecta]
 gi|190659644|gb|EDV56857.1| GG20003 [Drosophila erecta]
          Length = 824

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 574 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 633

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 634 ILLR--NVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 690

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 691 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 742

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 743 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 775


>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
           Sheeba]
 gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
          Length = 282

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 30/139 (21%)

Query: 5   FIDIETRSPQPLPKVGV---------WAYAEQAVITLCAYAWDDEPVKLWDRT------- 48
           FID+ET    PL    +              +             P  + D T       
Sbjct: 70  FIDLETTGSCPLKHEILEIGAVQVSGGKIINRFETL---VKVKSVPDYISDLTGIAYEDT 126

Query: 49  ----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLAR 101
                      +L  +L +   + VAHN+ F+     +     +  P     +CT  L+R
Sbjct: 127 LNAPSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSR 184

Query: 102 --TNGLPSSLKNACLALNF 118
                +  SL      L F
Sbjct: 185 RAILSMRYSLSFLKELLGF 203


>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
 gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
          Length = 957

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 50/200 (25%), Gaps = 41/200 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID+E             +Y  +  ++L   +       + D          L +   +
Sbjct: 304 LAIDVE--------HHSNQSY--KGFVSLIQLSTRTHD-YIIDPFNLFNEIQMLNELTAN 352

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H S ++ I  ++     +       T   AR    P                 
Sbjct: 353 PKILKVLHGSDYDIIWLQR--DFSVYIVNMFDTGQAARILNTPG---------------- 394

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFK------ 175
               G +L                  A+  +        EY + D      ++       
Sbjct: 395 ----GYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIMKNLL 450

Query: 176 RLIPLSDGERDLWLLDQTIN 195
            L    + E  +   D  + 
Sbjct: 451 LLHRHKNTEPPVLASDAFME 470


>gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14]
 gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14]
          Length = 359

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 31/200 (15%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A   + + +        M   L  +L DE+++ V H++  + + FK   G  
Sbjct: 36  PQLALVQMAVGRDILLIDPLIPG--MTEALAPWLADESIIKVMHSASEDLVAFKWACG-- 91

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +  +    T + A   G+   +                  G   +     G   +     
Sbjct: 92  VLPRPLFDTQIGASLAGIGGGM------------------GYQKLVAEITGVALAKGETR 133

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           +        +   +Y   DVE    L   +            L           D + +L
Sbjct: 134 SDWMRRPLSESQLQYAADDVEHLFALHDAIGARLQALGRQQWLHD---------DGERLL 184

Query: 208 KLQELIAQERKKLDEDIVKL 227
                       L     + 
Sbjct: 185 ASVANDEDRWPHLAMRSAQF 204


>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
 gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 13/293 (4%)

Query: 12  SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71
           S   L    V        + L    +D E V L D        S  +  L ++ V+ V H
Sbjct: 34  SVVALDTEFVRIRTLYPQLGLIQL-YDGERVSLIDPLSIQDF-SPFIALLANQNVLKVLH 91

Query: 72  NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131
               +  +F+            I T ++A     P+S       +       ++++G + 
Sbjct: 92  ACSEDLEVFQHYYQQ--MPTPMIDTQIMASFLSFPNST-GLATLIQHYFQ-LEIDKGASR 147

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                +   D              W L   Y +   +  +  ++  +   D E  L   +
Sbjct: 148 TDWLARPLSDKQLV----YAAADVWYLLPLYQRMQQDLQQTPWQSAVEN-DCEMLLAKRE 202

Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           Q  +     +++    +L +      K L +  ++       +         +L+     
Sbjct: 203 QGKDPEFAYLNIPNAWRLNQQELMRLKVLAKWRLEDAMKRDLALNFV-VRGEHLW-AVAK 260

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
           +    +   L   L+   +    K ++     ++         L   V  D R
Sbjct: 261 NNPKHTSELLALGLTALEVRIHGKKILHLLSQANRMEEAHYPNLITRVVDDSR 313


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 46  DRTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D  +  ++   ++       +  + VAHN+ F+  L +   +  GI       + T +L+
Sbjct: 330 DVADAPSI-EQVIPAFHHFSKDAVLVAHNAPFDIGLLRQQERATGIKWD-HPVLDTVLLS 387

Query: 101 RT---NGLPSSLKNACLALNFS 119
                     SL   C  L   
Sbjct: 388 AVVFGISQEHSLDALCQRLAIE 409


>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
 gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
          Length = 882

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 23/153 (15%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
            A +   E   +     +  +   L ++ RD T   V H +  + I  ++     I    
Sbjct: 285 FAISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQR--DFSIYVCN 342

Query: 93  WICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
              T   ++   +   SL++    L+                 FC  + +          
Sbjct: 343 LFDTGQASKVLQMDRNSLEHL---LHH----------------FCGVTANKEYQAADWRL 383

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                ++   Y + D      ++  +      E
Sbjct: 384 RPLPDEMIK-YAREDTHYLLYIYDLMRLRLVNE 415


>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
 gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
          Length = 377

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E           +      A + L   A  DE V +   T     P  L + + D
Sbjct: 22  IAIDTE----------FLRERTYHAKLCLVQVATPDECVVIDPLTIDDLSP--LAELMAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
              + V H    +  +   TLG  +       T V A   G  +
Sbjct: 70  VDTLKVFHACSQDMEVLVHTLG--VCPAPIFDTQVAAGFLGERA 111


>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
 gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
          Length = 374

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L       +   +     Q   P    + L 
Sbjct: 27  YLALDTE-----FMRVDTFYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 75  DERVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 119

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 120 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDTR 172

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 173 LSEEKRAWLL 182


>gi|229472273|gb|ACQ72651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110]
          Length = 298

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 21/113 (18%)

Query: 4   LFIDIETRSPQ----PLPKVGVWA--YAEQAVITLC--AYAWDDEPVKLWD--------- 46
           + +D ET         + ++G+    Y     I      +A  DEP              
Sbjct: 45  ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGI 104

Query: 47  ---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                    +    +    D+ V+ +AHNS F+R   ++   +    K W C+
Sbjct: 105 TDEMVAGQRIDDAAVSAFVDDAVITIAHNSGFDRKFAERYWPV-FEHKAWGCS 156


>gi|262212231|gb|ACY35732.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRCADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 237

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ- 59
           M ++ +D ET   +P          E   + L  +              +  MP++  + 
Sbjct: 9   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 64

Query: 60  ------YLRDE---------------TVMCVAHNSLFERILFKKTLG-IDIPSKRWI--- 94
                 +LRD+                   V HN+ F+       LG + +P   +    
Sbjct: 65  HGLGDEFLRDKPVFSEIGSAFLEFVGEARLVIHNAAFDMKFLNFELGRVGLPRLPFERAL 124

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T  LA  R  G P++L   C      
Sbjct: 125 DTLALARKRFPGAPATLDALCRRFGVD 151


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGI 86
           D  PV + + T Q          + +DLL+ L  +    VAHN+ F+        +  G+
Sbjct: 115 DPGPVHIHNLTPQRLAGAPRFEEVANDLLELL--DGRTLVAHNASFDYGFLDAEVRRAGM 172

Query: 87  DIPSKRWICTSVLARTNG---LPSSLKNACLA 115
            +P+++ +CT  L+R          L      
Sbjct: 173 TMPTRQRLCTLALSRRLEIDVPNHKLSTLAAH 204


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---DEPVKLWDRTEQSAMPSDL 57
           M ++ +D ET     L    +        I      ++              +  MP + 
Sbjct: 1   MREIVLDTETTGLDALRGDRL------VEIGCVEM-FNHMPTGQTYHVYINPERDMPQEA 53

Query: 58  L-------QYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSK 91
                   ++L D+                   + HN+ F+         +     IP +
Sbjct: 54  FAVHGLSTEFLADKPLFAAVADEFLEFIGDAPLIIHNASFDIGFINMELDRLKRAAIPCE 113

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
           R + T +LAR      S  L + C      
Sbjct: 114 RLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 230

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGV---------------------WAYAEQAVITLCA 34
           M ++  D ET    P     L ++G                         AE   +   +
Sbjct: 2   MREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPERDMPAEAEAVHGLS 61

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
            A+  +  K            DLL ++ D     VAHN+ F+       L +     +  
Sbjct: 62  IAFLSDKPKFA------EKADDLLAFIADS--PMVAHNAGFDFGFINNELELCGREPVSR 113

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
            R + T  +AR    G   SL   C      
Sbjct: 114 DRMVDTVAIARRKHPGAKLSLDALCSRYGID 144


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 35/140 (25%), Gaps = 30/140 (21%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRT---------- 48
            D ET    P     + ++G           L +  +D   +P +               
Sbjct: 532 FDTETTGLDPAGGDEILQIGATRIV-NGR-LLASECFDQLVDPQRSIPEAGIAVHGIRPE 589

Query: 49  --EQSAMPSDLLQYL--RDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLAR 101
                     +L          + V HN  F+       +   G+    +  + T +LA 
Sbjct: 590 MVRGKPTLPQVLPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFD-QPVLDTLLLAA 648

Query: 102 TNGL---PSSLKNACLALNF 118
                     L+     L  
Sbjct: 649 IVHPGEDSHGLEAMAARLGI 668


>gi|302497375|ref|XP_003010688.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
 gi|291174231|gb|EFE30048.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
          Length = 1138

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 75/329 (22%), Gaps = 74/329 (22%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   +  T                    +++ + A  G   V AD+   E 
Sbjct: 672 PQVIPMGTITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEEL 726

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 727 WIAS-LVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIYG 785

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K   T+       + +                        +    +   + K   T 
Sbjct: 786 AGLKFAATLLRQFNPSMSEAE---------------------TKAVAAKLYKETKGTRTT 824

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             ++ +    +  G      +  E FA   +    +    +              +    
Sbjct: 825 RRILSENPFLRG-GTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGGFMTSR- 882

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KN 616
                                                  +Q+   D   +L   M     
Sbjct: 883 -----------------------------------INWAIQSSGVDYLHLLIISMDYLIR 907

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                  + +TVHDEI     +T  +   
Sbjct: 908 RFNLDARLAITVHDEIRYVVRETDKYKAA 936


>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
 gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
          Length = 389

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 67/272 (24%), Gaps = 37/272 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A       + D          LL  +R
Sbjct: 22  FVAVDTE------FMRETTYW----PKLCLIQVASPTHEA-VIDPLADDIDLEPLLAVMR 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE ++ V H +  +  +F     +    K    T V                        
Sbjct: 71  DERILKVFHAARQDVEIFNN---LKAMPKPLFDTQVA-----------GMAAGFG----- 111

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +     AL+ +  +  +D        A           Y   DV     LF  L    +
Sbjct: 112 -EQIAYDALVRQMLRIELDKSSRFTDWARRPLTEAQLT-YALADVTHLAALFPILRERLE 169

Query: 183 GERDLWLLDQTINDRGYR----IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
               L  +++ +          +D +   +       + K L             +  + 
Sbjct: 170 TSGRLAWVEEEMTAISDPAAYDVDPEKAWRRLRPRKTQAKYLAVFKAVAAWRERTAQNRD 229

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270
                 L     ID +     T    L++   
Sbjct: 230 QPRGRILKDE-AIDELATQAPTSLEALNNLRG 260


>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
          Length = 380

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L +D E      +     +  A      L       +   +     Q   P    + L 
Sbjct: 33  YLALDTE-----FMRVDTFYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 80

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE V+ V H    +  +F +  G          T + A   G+  S+             
Sbjct: 81  DERVVKVLHACSEDLEVFLRLTGS--LPVPLFDTQLAAAYLGMAHSM------------- 125

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                         +      P D TR++ +Q    ++   Y   DV+   +++  L   
Sbjct: 126 -------GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDTR 178

Query: 181 SDGERDLWLL 190
              E+  WLL
Sbjct: 179 LSEEKRAWLL 188


>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
 gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
          Length = 377

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E           +        + L   A   E V +         P  L + + D
Sbjct: 22  IAVDTE----------FLRERTFHPRLCLVQIATPAESVAVDPLVIDDLSP--LAELMAD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           E+V  V H    +  +   T+G  +  +    T V A   G
Sbjct: 70  ESVTKVFHACSQDMEVMLHTVG--VLPRPIFDTQVAAAFLG 108


>gi|67515517|ref|XP_657644.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|40746203|gb|EAA65359.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|259489774|tpe|CBF90322.1| TPA: DNA polymerase gamma (AFU_orthologue; AFUA_5G12640)
           [Aspergillus nidulans FGSC A4]
          Length = 1134

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 8/222 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 695 GSELKAMIKAPPGYAFVGADVDSQELWIAS-LIGDAQFQLHGGNAIGFMTLEGSKAAGTD 753

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +      ++  +++ +
Sbjct: 754 MHSRTAKILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERETQEVASKLYKETK 813

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
            A++    + D        +  +    E      R        L   +TE         G
Sbjct: 814 GAKTTRRLLSDNPFWRGGTESFVFNKLEEFADQER---PRTPVLGAGITEALMRRFINRG 870

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           S    R+    +     +   + I +    R      +   +
Sbjct: 871 SFMTSRINWAIQSSGVDYLHMLIIAMDYLIRRFNIQARLAIT 912


>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
 gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
          Length = 226

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 33/148 (22%)

Query: 1   MS-KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57
           M   +  D ET    PL         E A + L                 +  +P +   
Sbjct: 1   MKRTILFDTETTGLDPLKG---DRVIEIAALELVG-DLPTGRNFHVLIDPERDVPEEASR 56

Query: 58  -----LQYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKRW 93
                   L  +                   +AHN+ F+         +     +   R 
Sbjct: 57  VHGFTRADLEGKPKFAEVASGFLEFVGDDPLIAHNARFDFGFLNAELARAGQPVLDMGRM 116

Query: 94  ICTSVLA--RTNGLPSSLKNACLALNFS 119
           + T  +A  R  G+P+SL   C   +  
Sbjct: 117 VDTLDMARERFPGMPNSLDALCRRFSID 144


>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 16/125 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +  ++   + D  +       L +  
Sbjct: 246 EIAVDLE-----------HHDYRSYLGIVCLMQISSREKDW-IIDTLKLRDSLVVLNEIF 293

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            +  ++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          +
Sbjct: 294 ANPNIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTYHASKKLGLPRFSLAYLLENYANFK 351

Query: 121 HLTKM 125
              K 
Sbjct: 352 TSKKY 356


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 31/159 (19%), Gaps = 61/159 (38%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +  D ET    P              +                       P ++L  L 
Sbjct: 276 YVVFDTETTGFLPNKD----------EVVQIG---------ALRVVNGQQAPGEVLDLLV 316

Query: 63  DETVMC-------------------------------------VAHNSLFERILFKKTLG 85
           +                                          VAHN+ F+   F +   
Sbjct: 317 NPGRAIPASSTAVHRITDAMVKDAPDMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAP 376

Query: 86  -IDIP-SKRWICTSVLARTN---GLPSSLKNACLALNFS 119
            I +      + T +L+          +L      L   
Sbjct: 377 KIGMKFDHPVLDTVLLSAVLFGITEGHTLDELAKRLGIE 415


>gi|229472395|gb|ACQ72712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRELFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K       +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKDAKKKGKEIRAAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E      + G  
Sbjct: 117 IDGLDKLLASIKTASERGFIKAIDGRK 143


>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
 gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
          Length = 237

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 36/149 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDE--------PVKL 44
            ++ +D ET     L   G     E   + L +         +  + E         V  
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPERDSHEDALKVHG 59

Query: 45  W------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GIDIPSKR 92
                  D+ + +A+  +LL+YL+   V  + HN+ F+     K L       +      
Sbjct: 60  ISNEFLRDKPKFAAVADELLEYLQGAEV--IIHNAAFDVGFLNKELELLGRPALHTFVDS 117

Query: 93  WICTSVLARTN--GLPSSLKNACLALNFS 119
              T  +A+    G  +SL   C  L   
Sbjct: 118 VTDTLAMAKELYPGKRNSLDALCDRLGVD 146


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 35/146 (23%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQSAMPS 55
            +  D ET    P    + ++G     +   I          D            S    
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIK-GRIVEGEQLDMLVDPG----IPIPAASTRVH 332

Query: 56  DLLQY--LRDETVMC--------------VAHNSLFERILFKKT---LGIDIPSKRWICT 96
            +     L    +                VAHN+ F+     +    +G++  +   + T
Sbjct: 333 KINDAMVLGAPDIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAKRMGVE-WTHPVLDT 391

Query: 97  SVLARTN---GLPSSLKNACLALNFS 119
            +L+          +L   C  L  +
Sbjct: 392 VLLSAVLFGASETHTLDAVCARLGVT 417


>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
 gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
          Length = 323

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|229472271|gb|ACQ72650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIKAYQLAFIHDE 192


>gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894]
          Length = 186

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTNGL-- 105
            +  ++L +  D     +AHN+ F+         +     I  +R + T  +AR      
Sbjct: 17  EVAEEILAFFGDA--KWIAHNATFDMGFINAELARIGLPPILPERVVDTLSMARRKHPMG 74

Query: 106 PSSLKNACLALNFS 119
           P+SL   C      
Sbjct: 75  PNSLDALCRRYGID 88


>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
          Length = 669

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 22/139 (15%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D     A  + L Q   +  ++ V H +  +    ++  G+ +       T   AR 
Sbjct: 167 YIVDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYV--VNLFDTGQAARV 224

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             L  S +                         CK   D             +  +   Y
Sbjct: 225 LELGLSREYLLKHY-------------------CKVESDKKYQKADWRERPLSKDMLK-Y 264

Query: 163 CKRDVEATRELFKRLIPLS 181
            + D      ++  +    
Sbjct: 265 AQEDTHYLLYIYDMMKLDL 283


>gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238]
 gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238]
          Length = 395

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 55/200 (27%), Gaps = 43/200 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+     +   L D   +    
Sbjct: 32  YVTVDTEFLRERTYYS---------------KLCLIQLAYMGEGGDDAVLVDPLAEGLDL 76

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L +  +DE V+ V H +  +  +F   +   I  K    T V A   G          
Sbjct: 77  APLYELFKDENVVKVFHAARQDLEIF--FVDQGIIPKPLFDTQVAAMVCGF-------GE 127

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              +            L+ +  K ++D        +           Y   DV   R ++
Sbjct: 128 QAGYET----------LVRKIAKDNVDKSSRFTDWSRRPLTDAQ-KTYALADVTHLRVIY 176

Query: 175 KRLIPLSDGERDLWLLDQTI 194
           + L    +       + + +
Sbjct: 177 ENLSAELEKSGRKKWVAEEM 196


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 38/241 (15%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVIT-LC-AYAWDDEPV---------KLWDR 47
            + +DIET         + ++G         I     ++    +PV            D 
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVR-CRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDM 512

Query: 48  TEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLAR 101
            E +   ++ L+         + VAHN+ F+    +      LG +      + T  LAR
Sbjct: 513 LEGAPEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFA-NPVLDTLTLAR 571

Query: 102 TNGLP---SSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                    SL      L      +             L+    +        D  R   
Sbjct: 572 AVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLERAEGVETVADLNRLTK 631

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
               +    Y    +  T+   K L  L       +       +R  R+    + K +E 
Sbjct: 632 GINVEQLRPYHTTVLVKTQAGMKNLYKLISLSHIEY------FNRTPRVPRSELEKHREG 685

Query: 213 I 213
           +
Sbjct: 686 L 686


>gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 243

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 57/166 (34%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------DEPVKLWDRTEQSAMP 54
           M ++ +D ET         G   ++    I     A +                 + +MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPERSMP 50

Query: 55  SDLL-------QYLRDET-------VMC---------------------VAHNSLFERIL 79
            +           L            +                      V HN+ F+   
Sbjct: 51  HEAFGVHGIGPDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKF 110

Query: 80  FKKTLGI----DIPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
               LG      +P ++ I T  +A  R  G P++L   C   +  
Sbjct: 111 LNAELGWMNLRQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSID 156


>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
          Length = 431

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 351 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 408

Query: 116 L 116
            
Sbjct: 409 Y 409


>gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa]
          Length = 759

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|229472343|gb|ACQ72686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472583|gb|ACQ72806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|260813766|ref|XP_002601587.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
 gi|229286886|gb|EEN57599.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
          Length = 1237

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 45/232 (19%)

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           Y+W   P  L D          +     D    + + HN  F+R   K+   +  P  R+
Sbjct: 206 YSWSPHPT-LDDLITMETAVRSIKPGGEDWREKIVIGHNVSFDRSYIKEQYFMKGPKTRF 264

Query: 94  ICTS-----------------VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
           + T                  + +R  G    LK+     + +    K  +G        
Sbjct: 265 LDTMSLHMAISGLTSFQRILWLASRA-GKKQGLKDVREYTSKTRKQFK-GQGIGGWDWLN 322

Query: 137 KGSIDSPP--------------------YDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
             SI++                         T  +    +Q    YC RDV AT E+F  
Sbjct: 323 VSSINNLGDVHVLYTGGPKLEKSERDVFVKGTLQDVRNQFQELMTYCARDVRATHEIFSM 382

Query: 177 LIPLSDGERDLWLLDQTINDRGY---RIDLDLVLKLQELIAQERKKLDEDIV 225
            +P+        +    + + G     ++ +   +         ++L +++ 
Sbjct: 383 QLPMFLERFPHAVTLAGMLEMGQCYLPVNSNW-ERYLRDAEDTFQELQKEMK 433



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 84/324 (25%), Gaps = 25/324 (7%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +PR   +  +  + ++      + A P       +++ + A  G   + AD+   E  + 
Sbjct: 805  IPRVVTAGTVTRRAVEPTWLTASNARP-DRVGSELKAIVQAPPGYHFIGADVDSQELWIA 863

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +   ++                 K+  T +   +       R   KV      Y  G 
Sbjct: 864  AILGDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTIGISRDHAKVFNYGRIYGAGQ 923

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL-----WMQDQYPEFAVKDKLIG 500
               + +       + Q     K+   +   +    +             P       +  
Sbjct: 924  PFAERLLLQFNHRMTQEEAGEKAKQMYAATKGVRENPDYEEEGSYGAIIPRVVTAGTVTR 983

Query: 501  TACELVKKAWRAKHQ-GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
             A E             V    K + +        G  + ++ +     L          
Sbjct: 984  RAVEPTWLTASNARPDRVGSELKAIVQAPPGYHFIGADVDSQELWIAAILGDANFAGFHG 1043

Query: 560  IV-----LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD------ 608
                       ++   +D+    +     +        +       +VQ+ + D      
Sbjct: 1044 CTSFGWMTLQGKKSSGTDLHSKTASTIGISRDH---AKFVTSRVNWVVQSSAVDYLHLML 1100

Query: 609  ILCEGMKNATKNGYDIVLTVHDEI 632
            +    + N         +++HDE+
Sbjct: 1101 VCMRWLFNKYNIDGRFCISIHDEV 1124


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 49/151 (32%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50
            + +D+ET    P              I     A      K+ D                
Sbjct: 383 YVVLDLETTGLNP----------RSDEIMEIG-AVKTRDGKVIDEFHTFVRPNKLNKKSL 431

Query: 51  ------SAMPSD----------LLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
                   M  D          LL++++D   + VAHN+ F+    K  L   GI+    
Sbjct: 432 NITGITEDMLKDAPDIMQVLPKLLEFIKDS--ILVAHNADFDMTFLKNILSKSGIEFNP- 488

Query: 92  RWICTSVLARTN----GLPSSLKNACLALNF 118
            +I T  L++          SL         
Sbjct: 489 PYIDTLRLSQALLRNKIKSFSLDKLVDHFGL 519


>gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus]
          Length = 860

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLR- 408

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                    +  G     ++        P      N+ +    +  Y    +     L++
Sbjct: 409 ---------LYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLE--LWE 457

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        + +W   + I 
Sbjct: 458 RGNDQPVQLQVVWQRSRDIC 477


>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 824

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 26/172 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
            ++ +DIE              +       I L   +       L D          L  
Sbjct: 86  KEIGVDIE------------HHHVRSFRGFIPLIQISTYSTD-YLVDAIALHDDMHLLHP 132

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
              +  ++ + H +  + +  ++   I I       T+      G P    +    L   
Sbjct: 133 IFANPAILKIFHGADNDSLWLQRDFHIYI--VNLFDTARACDVLGKPQR--SLAYLLQL- 187

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                   G +    + +      P       + +    +  Y  + + A  
Sbjct: 188 ------YCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANL 233


>gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus]
 gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
          Length = 885

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 15/140 (10%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLR- 408

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                    +  G     ++        P      N+ +    +  Y    +     L++
Sbjct: 409 ---------LYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLE--LWE 457

Query: 176 RLIPLSDGERDLWLLDQTIN 195
           R        + +W   + I 
Sbjct: 458 RGNDQPVQLQVVWQRSRDIC 477


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 37/149 (24%)

Query: 1   MSKLFIDIETRSPQP-----------LPKVGVWAYAEQA-------------VITLCAYA 36
           +  +  D+ET                + + G+     Q               IT  +  
Sbjct: 409 LKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQK 468

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRW 93
             DE    W+          + + ++D   + VAHN+ F+    ++              
Sbjct: 469 MIDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 521

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFS 119
           I T  ++R         SLKN        
Sbjct: 522 IDTLEVSRFLNPNEKSHSLKNVAKRYEIE 550


>gi|315042021|ref|XP_003170387.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
 gi|311345421|gb|EFR04624.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
          Length = 1138

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 75/329 (22%), Gaps = 74/329 (22%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   +  T                    +++ + A  G   V AD+   E 
Sbjct: 672 PQVIPMGTITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEEL 726

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 727 WIAS-LVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIYG 785

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K   T+       + +                        +    +   + K   T 
Sbjct: 786 AGLKFAATLLRQFNPSMSEAE---------------------TKAVAAKLYKETKGTRTT 824

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             L+ +    +  G      +  E FA   +    +    +              +    
Sbjct: 825 RRLLSEDPFLRG-GTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGGFMTSR- 882

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KN 616
                                                  +Q+   D   +L   M     
Sbjct: 883 -----------------------------------INWAIQSSGVDYLHLLIISMDYLIR 907

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                  + +TVHDEI     +T  +   
Sbjct: 908 RFNLDARLAITVHDEIRYVVRETDKYKAA 936


>gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 342

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 46/193 (23%), Gaps = 25/193 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYL 61
            +  D E      L + G         I   A+    + + L D T+    +       L
Sbjct: 58  IIGFDCE---GVDLCRHGTLC------IMQIAF---PDAIFLVDATQGGEMLLKACKPAL 105

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL----N 117
               +  V H+   +        GI +       T +                       
Sbjct: 106 ESSYITKVIHDCKRDSEALYFQFGIKLH--NVFDTQIAYSLIEEQEGRTKLPDDYISFVG 163

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKR 176
                     G   I+   K  +       +     +   +L       DV     ++ +
Sbjct: 164 LLADPR--YCG---ISYLEKEEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYIYHK 218

Query: 177 LIPLSDGERDLWL 189
           +I   +     +L
Sbjct: 219 MIKKLNQRSLWYL 231


>gi|229472439|gb|ACQ72734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLPEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|229472403|gb|ACQ72716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472503|gb|ACQ72766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S G+ +V ADL+GIE R+L+        +  +  G    +        
Sbjct: 7   PSDPRFRELFLPSPGQVMVAADLSGIELRMLSHF------LARYDGGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K       +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSPKAKKKGKEIRAAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E      + G  
Sbjct: 117 IDGLDKLLASIKTASERGFIKAIDGRK 143


>gi|47934612|gb|AAT39744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 254

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 597 LTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
              +++Q     ++ + +          K    +V  VHDE   E         G     
Sbjct: 176 ALNSLLQGAGAIVMKKALVIFSDKIKTNKWNVKLVANVHDEFQFECSKDIAEEAGKAAK- 234

Query: 651 MT 652
           M+
Sbjct: 235 MS 236


>gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
 gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
          Length = 228

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 35/148 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL---- 57
            K+ +D ET       K G     E   + +  +      +       +  +  +     
Sbjct: 5   RKVILDTETTGLD--MKNG-DRVIEIGCVEMVDFRI-TGEIFHIYLNPEREISKEATRVH 60

Query: 58  ---LQYLRDE---------------TVMCVAHNSLFERILF------KKTLGIDIPSKRW 93
               + L D                +   VAHN+ F+           +   + I  +  
Sbjct: 61  GITFEQLADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRL-IKLENV 119

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
           I T  +AR    G P+SL   C     S
Sbjct: 120 IDTLAMARKIFPGSPASLDALCRRFRIS 147


>gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223]
 gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223]
          Length = 328

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 11/220 (5%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G        + T
Sbjct: 2   FDGENLSLIDPTVIDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 58

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            ++A   G   S   A   L   +   ++++ ++      +   D              +
Sbjct: 59  QIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQLEYAAADVF 112

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216
            L   Y K     T   +     L + E  +    +  N     +D+    +L+      
Sbjct: 113 YLLPMYEKLLERVTHAGWWE-AALQESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAI 171

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
            K L             +          L +    +    
Sbjct: 172 LKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 211


>gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
 gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
          Length = 242

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 41/158 (25%)

Query: 1   MSKLFIDIETR----SPQP-LPKVGV-------------WAY--------AEQAVITLCA 34
           M ++ +D ET     S    + ++G                Y        A    I    
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPKRSMPAGAFGIHGIG 60

Query: 35  YAWDDEP-----VKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID 87
               D P      ++        + +D+ Q   D       V HN+ F+       LG  
Sbjct: 61  PDLLDPPQTPTAGQVI--LRDKPVFADIAQAFVDFIGDAKLVIHNAAFDMKFLNAELGWV 118

Query: 88  ----IPSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
               +P  + + T  +AR    G P+SL   C      
Sbjct: 119 NRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGID 156


>gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33]
 gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
          Length = 246

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 11/218 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 39  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 95  CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 148

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K   + T+  +     L + E  +    +  N     +D+    
Sbjct: 149 LEYAAADVFYLLPMYEKLVEQVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 207

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           +L+       K L             +          L
Sbjct: 208 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLL 245


>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
 gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
          Length = 385

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A DD  V +    +   + +     +RDE ++ V H +  +  +       D
Sbjct: 39  PELCLIQMASDDLAVLVDPLADGLDL-APFFDLMRDERIVKVFHAARQDVEII--HKLGD 95

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V A   G   S                    +    R  K S  +     
Sbjct: 96  IIPVPLFDTQVAAMVCGFGES------------IAYDQLVARTTDGRIDKTSRFTDWRRR 143

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++   A      Y   DV   R++++ L      +     +D+ +
Sbjct: 144 PLSDQQLA------YALADVTYLRDVYRFLSAQLAEKGRTRWVDEEM 184


>gi|229472527|gb|ACQ72778.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 39/143 (27%), Gaps = 9/143 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA          A  +G            +    
Sbjct: 11  EFRKLFRATPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R + K +  A  Y  G K    +                   +  +     E  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTACE 504
              ++ +  E        G  C 
Sbjct: 124 VTAVKSKA-ESGYIQLCDGRRCP 145


>gi|168037523|ref|XP_001771253.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677494|gb|EDQ63964.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 188

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 26/155 (16%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            I L      ++   +       ++P++L+ +L+D ++         + +  K+  G++ 
Sbjct: 54  KIALLQIC-GEDDCLIVQMLYLDSIPTELVNFLKDPSIKFPGVGIKGDALKLKRDWGLEC 112

Query: 89  PSKRWIC-TSVLARTNGLP----SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
                I  T++ A   G P    + LK+                   ++           
Sbjct: 113 NGA--IDLTTLAASVLGRPELKAAGLKSLAKV---------------VMDYDMAKPKRVT 155

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
             +  +       ++  EY   D   +  + ++L 
Sbjct: 156 MSNWAK---PILDKVQVEYASLDAWVSYAIHQKLF 187


>gi|255637101|gb|ACU18882.1| unknown [Glycine max]
          Length = 278

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 48/193 (24%), Gaps = 26/193 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         + +   A+ D  V L D       +       L 
Sbjct: 61  IGFDCE---GVDLCRKGT--------LCVMQLAFPD-AVYLVDAIEGGEELIIACKPALE 108

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL----NF 118
              +  V H+   +        GI +     + T +           K            
Sbjct: 109 SNYITKVIHDCKRDSEALYFQFGIKLN--NVVDTQIAYSLIEEQEGRKRLRDDYISFVGL 166

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                    GK+      K  +      D     H    +        DV     ++ ++
Sbjct: 167 LADPR--YCGKS---YDEKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQM 221

Query: 178 IPLSDGERDLWLL 190
           +     ER LW L
Sbjct: 222 MEKL-NERSLWYL 233


>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
 gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
          Length = 323

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    P+    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 241

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 36/153 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC---------------AYAWDDEPVKLW 45
           M ++F+D ET     L         E   + +                  A  +E V++ 
Sbjct: 1   MRQIFLDTETTG---LSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQRANHEEAVRVH 57

Query: 46  DRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-----K 91
             T+         SA+  + + ++RD  +  +AHN+ F+      +   I  P       
Sbjct: 58  GLTDAFLADKPLFSAVAQEFVDFVRDAEI--IAHNANFDVGFLDAELKRIGHPPLKQLVD 115

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFSEHL 122
           +   + V+AR        SL   C  L      
Sbjct: 116 KVTDSLVMAREQFPGKANSLDALCRRLEVDNTS 148


>gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587]
 gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587]
          Length = 381

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
 gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
 gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
 gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
 gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
 gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
 gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
 gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
 gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
          Length = 381

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K   + T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVEQVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|321462891|gb|EFX73911.1| hypothetical protein DAPPUDRAFT_226991 [Daphnia pulex]
          Length = 1206

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 91/339 (26%), Gaps = 46/339 (13%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   S  +  + +++                 +++ I    G   V AD+   E  + 
Sbjct: 796  LPQIVTSGTLTRRAVEST-WLTASNAYKDRIGSELKAMIQCPPGFNFVGADVDSQELWIA 854

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA---------IGKVMELALG 440
            + I         FA         +        D      R            K++     
Sbjct: 855  SIIGD-----SFFAGQHGSTAFGWMTLQGKKSDGTDMHSRTAAAVEITRDQAKILNYGRI 909

Query: 441  YQGGAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQ-YPEFAVKDKL 498
            Y  G +  +T+       L +   + K+          +         Q       KD+L
Sbjct: 910  YGAGERFARTLLMQFNHRLTEKEASEKARKMYSLTKGNSLLKLSHYGRQLASASGNKDEL 969

Query: 499  IGTACELVKKAWRAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
            +        +    K   + Q+      E     +  GG+ S        +L        
Sbjct: 970  VTLEQLSEMRKNARKEPSLKQIANLPTDELVERRMWAGGTESH----MFNKLEEIAQSES 1025

Query: 558  VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM 614
                +   R     + +   +   T+                 +VQ+ + D   ++   M
Sbjct: 1026 PQTPVLHCRISRALEPRNVGNEFMTSR-------------VNWVVQSSAVDYLHLMIVAM 1072

Query: 615  ---KNATKNGYDIV-----LTVHDEIVSETPDTPYFSVG 645
                +  K G  ++     +++HDE+     +   F   
Sbjct: 1073 RYLVDVYKLGVVLIEGRFSISIHDEVRYIIKEEDKFRAA 1111


>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
 gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
          Length = 232

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 36/149 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY--AWDDEPVKLWDRTEQSAMPSDL- 57
           M ++ +D ET    PL    +        I                     +  MP +  
Sbjct: 1   MREIVLDTETTGLNPLTGDRL------VEIGCVEIFNRIPTGQTFHVYLNPERDMPLEAF 54

Query: 58  ------LQYLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKR 92
                  ++L D+                   V HN+ F+         +     +   R
Sbjct: 55  NVHGLSAEFLSDKPLFAAVVDDFLAFIAGDPLVIHNAAFDIGFINAELARLARPALTFDR 114

Query: 93  WICTSVLARTNGLPSS--LKNACLALNFS 119
            + T  LAR     +S  L +        
Sbjct: 115 VVDTLSLARRRHPGASNRLDDLMNRYGID 143


>gi|262342151|gb|ACY54586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+   ++ +  V   A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKIGISRKLVKTVTN-AFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                    +  +  E      L G  
Sbjct: 117 IDGLDKLLEVIKKASERGFIKALDGRK 143


>gi|229472423|gb|ACQ72726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +     K     + +  A      
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTACE 504
                    E        G  C 
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCP 145


>gi|195164742|ref|XP_002023205.1| GL21087 [Drosophila persimilis]
 gi|194105290|gb|EDW27333.1| GL21087 [Drosophila persimilis]
          Length = 1153

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 89/325 (27%), Gaps = 38/325 (11%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 764  CPQVVACGTLTRRAMEPTWMTASNSRP-NRLGSELRSMVQAPPGYRLVGADVDSQELWIA 822

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            + +       +  A        + +KA  + +  ++       R   KV+  A  Y  G 
Sbjct: 823  SVLGDAYACGQHGATPLGWMTLSGSKANGSDMHSITAKAVGISRDHAKVINYARIYGAGQ 882

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            +  +T+               K+   F   +    +   +++++ +        G     
Sbjct: 883  QFAETLLRQFNPTFSASEAKAKAMKMFAITKGKRVY--RLREEFHDELEDRAYSGYEASR 940

Query: 506  VKKAWRAKHQGV--LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +          V     W+  TE       E  +  A+         + R          
Sbjct: 941  LALQRNRTLGEVFHRPNWQGGTESAMFNRLEEIATGAQPKTPFLGGRLSRALESDGGPEQ 1000

Query: 564  SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN 620
              R L                                +VQ+ + D   ++   M+     
Sbjct: 1001 EQRFL--------------------------PTRINWVVQSGAVDFLHLMLVSMRWLMGP 1034

Query: 621  GYDIVLTVHDEIVSETPDTPYFSVG 645
                 L+ HDE+     +       
Sbjct: 1035 HVRFCLSFHDELRYLVQEDMAAKAA 1059


>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 902

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 23/154 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   +     +  +   L +  +D T   V H +  + I  ++  GI +   
Sbjct: 301 LMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYV--C 358

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   +R   +   SL++    L+                 FC  + +         
Sbjct: 359 NLFDTGQASRILQMDRNSLEHL---LHH----------------FCGVTANKEYQSADWR 399

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                 ++   Y + D      ++  +      E
Sbjct: 400 LRPLPDEMIK-YAREDTHYLLYIYDLMRLRLVKE 432


>gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217]
 gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217]
          Length = 371

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 80/307 (26%), Gaps = 48/307 (15%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T                 A + L   A+D + + L D      + S   
Sbjct: 26  LVLDTEFVRTRTYY---------------ARLGLIQ-AFDGKTLALIDPVAIEDL-SPFW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L    +  + H+   +  +F               + + A   GL   L         
Sbjct: 69  QLLTAPHITKLVHSCSEDLEVFAHYG--HCQPAPLFDSQIAASLAGLGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A + + C           T            +Y   DV    +L+  L+
Sbjct: 118 ---------GYAKLVQECLSVEIDKGESRTDWMKRPLTDAQLQYAANDVFYLYKLYPLLL 168

Query: 179 PLSDGERDL-WLLDQTINDRGYRIDLDLVLKLQELIAQERKKL-DEDIVKLTDGIIRSSR 236
              +    + WLL++       R+ L         +    + L ++       G  R  +
Sbjct: 169 EKLNANGRVEWLLEEGQRMTQDRLSLPDGESAYIKVKNAFQLLPEQLAYLKVLGKWRLEK 228

Query: 237 QTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
                    F       I L      ++   L+        +  I  R          L+
Sbjct: 229 ALAKDLALGFVVKDHALIALAKKQPSSVAE-LNRMTELTEQEKRIHGRDLIRVLTTADLD 287

Query: 294 TLSEAVS 300
            L E + 
Sbjct: 288 NLPEQLD 294


>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
          Length = 323

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573]
 gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573]
          Length = 373

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T  + M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 39  PQLGLIQM-FDGENLSLIDPTVINEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 95  CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 148

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T   +     L + E  +    +  N     +D+    
Sbjct: 149 LEYAAADVFYLLPMYEKLLERVTHAGWWE-AALQESELQVAKRTKVSNPELAYLDIKGAW 207

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 208 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 256


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 38/152 (25%), Gaps = 36/152 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWDD 39
            ++ +D ET    P          E A + L                       A     
Sbjct: 3   RQIVLDTETTGLNP---ASGDRIIEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHG 59

Query: 40  -EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------KKTLGIDIPSKR 92
                L D+     +  DLL+++RD  V  + HN+ F+                      
Sbjct: 60  LTEEFLSDKPRFEQIADDLLEFVRDAEV--IIHNAPFDCAFLDAELERLNRPAFRQHVPL 117

Query: 93  WICTSVLARTNGLPS--SLKNACLALNFSEHL 122
              T  +A+        +L   C         
Sbjct: 118 VTDTLAMAKLQFPGKFNNLDALCKRFGIDNTH 149


>gi|198473302|ref|XP_001356241.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
 gi|198139395|gb|EAL33303.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
          Length = 1153

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 89/325 (27%), Gaps = 38/325 (11%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
             P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 764  CPQVVACGTLTRRAMEPTWMTASNSRP-NRLGSELRSMVQAPPGYRLVGADVDSQELWIA 822

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            + +       +  A        + +KA  + +  ++       R   KV+  A  Y  G 
Sbjct: 823  SVLGDAYACGQHGATPLGWMTLSGSKANGSDMHSITAKAVGISRDHAKVINYARIYGAGQ 882

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            +  +T+               K+   F   +    +   +++++ +        G     
Sbjct: 883  QFAETLLRQFNPTFSASEAKAKAMKMFAITKGKRVY--RLREEFHDELEDRAYSGYEASR 940

Query: 506  VKKAWRAKHQGV--LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            +          V     W+  TE       E  +  A+         + R          
Sbjct: 941  LALQRNRTLGEVFHRPNWQGGTESAMFNRLEEIATGAQPKTPFLGGRLSRALESDGGPEQ 1000

Query: 564  SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN 620
              R L                                +VQ+ + D   ++   M+     
Sbjct: 1001 EQRFL--------------------------PTRINWVVQSGAVDFLHLMLVSMRWLMGP 1034

Query: 621  GYDIVLTVHDEIVSETPDTPYFSVG 645
                 L+ HDE+     +       
Sbjct: 1035 HVRFCLSFHDELRYLVQEDMAAKAA 1059


>gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
 gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
          Length = 382

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 26/127 (20%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T  P                + +   A  DE V + D            
Sbjct: 23  ITVDTEFLRETTYYPL---------------LCVIQLASPDEAV-VVDALAGGIDLKPFF 66

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLAL 116
             + +E+V+ V H +  +  +     G  +       T V A   G   S         +
Sbjct: 67  ALMSNESVLKVFHAARQDIEIIWHQAG--LIPHPVFDTQVAAMVLGHGDSIAYDALVERI 124

Query: 117 -NFSEHL 122
                  
Sbjct: 125 TGHRPDK 131


>gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1]
 gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1]
          Length = 367

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 42/198 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T       K+G+    +   + L       +P+ L D +          
Sbjct: 24  LVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPIALPDLSA-------FW 66

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  ++ + H+   +  +F    G          + + A   G+   L         
Sbjct: 67  ALLDNPNIIKLVHSCSEDLEVFA-HYGQR-QPTPLFDSQIAASLCGMGHGL--------- 115

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +   C G +       T             Y   DV    +L+ +L 
Sbjct: 116 ---------GYAKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLA 166

Query: 179 PLSDGERDLWLLDQTIND 196
                +  L  L +    
Sbjct: 167 EKLQTQDRLDWLYEEGER 184


>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 550

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 24/151 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  +E   + D  E  +    L +   D  ++ V H +  +    ++  G+ +   
Sbjct: 295 LMQISTREED-FIIDTLELRSEMYILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYV--V 351

Query: 92  RWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
           R   T   +R   L   SL +                    +  FC  + D         
Sbjct: 352 RLFDTHQASRALNLARHSLDHL-------------------LTHFCNVASDKRYQLADWR 392

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 +   +Y + D      ++  +    
Sbjct: 393 IRPLP-EEMVQYARADTHYLLYIYDCVRAQL 422


>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
 gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
          Length = 233

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +         +       + 
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGLARMGHRHGALED 174


>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
          Length = 877

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 23/154 (14%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   +     +  +   L +  +D T   V H +  + I  ++  GI +   
Sbjct: 276 LMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYV--C 333

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   +R   +   SL++    L+                 FC  + +         
Sbjct: 334 NLFDTGQASRILQMDRNSLEHL---LHH----------------FCGVTANKEYQSADWR 374

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                 ++   Y + D      ++  +      E
Sbjct: 375 LRPLPDEMIK-YAREDTHYLLYIYDLMRLRLVKE 407


>gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 31/193 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTLEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++         EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQL------EYALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLLDQTIN 195
            E     L + +N
Sbjct: 169 REGRTSWLTEEMN 181


>gi|229472611|gb|ACQ72820.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +    +                    
Sbjct: 104 ----------------TEGKEIRQAYMDAIPGLEKRVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKTYQLAFIHDE 192


>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 42/152 (27%)

Query: 2   SKLFIDIETRSPQPLP--------------------------KVGVWAYAEQAVITLCAY 35
            ++ +D ET     +                             G  ++ +   +     
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGIT- 61

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----- 90
                   L D+        ++ +YL+      + HN+ F+       L +         
Sbjct: 62  -----TEFLKDKPRFEEKIDEIWEYLQ--GAELIIHNAPFDLGFLNNELKLAKRPPLKQC 114

Query: 91  -KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
               I T V+A+    G  +SL + C  L   
Sbjct: 115 VGGVIDTLVMAKEMYPGKRNSLDSLCDRLGVD 146


>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 231

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 32/151 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDL- 57
           M ++F+D ET     L         E A + L       +   V L    E      ++ 
Sbjct: 3   MRQIFLDTETTG---LYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPDREIDEAAQEVH 59

Query: 58  ---LQYLRDE---------------TVMCVAHNSLFERILFKKTL------GIDIPSKRW 93
              L++L+D+                   + HN+ F+       L       I+      
Sbjct: 60  GITLEFLQDKPRFADIVDEFLQFVSGADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEI 119

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           I T  +A+    G  ++L   C         
Sbjct: 120 IDTLKMAKEMRPGQRNNLDALCRHYGIDNSS 150


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVIT-----------LCAYAWDD----EPVK 43
            +  DIET         + ++G         I               +  ++        
Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKVV-NGEIVDRFSTFVNPKRPIPFRIEELTHISDAM 517

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLAR 101
           + +      +    L +  D     VAHN+ F+    +     I+       I T  +AR
Sbjct: 518 VVNAPVIEEILPKFLDFCED--YTIVAHNAGFDTGFIRENAKRINAEYNPSIIDTVAMAR 575

Query: 102 TNGLPSS---LKNACLALNFS 119
                 +   L   C ALN S
Sbjct: 576 LLLPDLNRFKLDTVCKALNIS 596


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 38/148 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------------------ 45
           +  D+ET    P+    V        I    +   +                        
Sbjct: 22  VAFDLETTGLDPVRHSVV-------EIACVKFQGGEPRAFFSLLVKPPHPIPAEVTKIHG 74

Query: 46  ----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
               D  E   +PS +L  L     T + VAHN+ F+    +      G   P  R I T
Sbjct: 75  IGDQDVEEAPPLPS-VLPMLESFVGTHLLVAHNAPFDLSFLRIEYARCGRPYPGFRAIDT 133

Query: 97  SVLARTNGLP---SSLKNACLALNFSEH 121
            +LAR+        SL +   AL+    
Sbjct: 134 RLLARSVLPHLGRYSLASLTRALDIPLQ 161


>gi|303314467|ref|XP_003067242.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106910|gb|EER25097.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1142

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 70/343 (20%), Gaps = 69/343 (20%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G+SR G+          +  Q      +T+                     +++ + A  
Sbjct: 653 GSSRDGKSQNPASNLGFILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMVKAPP 712

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQ 428
           G   V AD+   E  + + + G+        N          KA  T +   +       
Sbjct: 713 GYVFVGADVDSEELWIAS-LVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGIS 771

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   KV      Y  G K   T+       +                             
Sbjct: 772 RNNAKVFNYGRIYGAGLKFAATLLRQFNPSIS----------------------DDQTKV 809

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                 K+                   G      +  E FA   +    +    +     
Sbjct: 810 IAANLYKETKGTRTIRKTISDSPFWRGGTESFVFNKLEEFAEQERPRTPVLGAGITEALM 869

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                    +                                           +Q+   D
Sbjct: 870 RRFINKGSFMTSR------------------------------------INWAIQSSGVD 893

Query: 609 ---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
              +L   M            + ++VHDEI     +   +   
Sbjct: 894 YLHLLIISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRAA 936


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 6/73 (8%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108
            +   LL   RD  +  V HN  F+     + LG        + T  L+R          
Sbjct: 73  EVLPGLLDLFRD-AIP-VGHNGTFDLAFLNQALGHGWH-SPLLDTLALSRILFPCLASHR 129

Query: 109 LKNACLALNFSEH 121
           L      L     
Sbjct: 130 LDYMSKYLTLEAT 142


>gi|68478473|ref|XP_716738.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
 gi|68478594|ref|XP_716679.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438355|gb|EAK97687.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438419|gb|EAK97750.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
          Length = 1228

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/532 (11%), Positives = 123/532 (23%), Gaps = 88/532 (16%)

Query: 140 IDSPPYDCTRANH---VQAWQLFGEYCKRDVEATR--ELFKRLIPLSDGERDLWLLDQTI 194
            D  PY  T           +LF      ++  T    +   L+ L      L+ +D   
Sbjct: 523 KDGTPYKKTAYMTGYPEWYRELFKTSKGEEMNLTLKTRITPLLLRLKWEGHPLFWVDSQG 582

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
                  D D  +         + KL E+ +  T   +     T      LF    +   
Sbjct: 583 WCFKVPFDDDNEIARLTEKKYVQPKLTEEELMETRDALL----TKGKSYVLF---KVPHP 635

Query: 255 DMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT--LSEAVSSDGRLRGTLQF 311
           +        ILS   +       L      ++    L           +           
Sbjct: 636 NGPSSRCTHILSKLYVRNFEDGTLTSEYDYATKILNLNNEASYWLGNRNRIKDQFVVYNQ 695

Query: 312 YGASR---TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            G ++   T + S        +     +   +T+                     ++S +
Sbjct: 696 QGKNKFFDTIKKSKEHSSMGIIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLV 755

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS--- 425
            A  G   V AD+   E  + + + G+                   K+  T +   +   
Sbjct: 756 EAPKGYCFVGADVDSEELWIAS-LVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTASI 814

Query: 426 -KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R   KV      Y  G K    +      ++     +            A   +  
Sbjct: 815 LGISRNDAKVFNYGRIYGAGVKFATRLLKQFNANITDEEADK----------VARQLYDS 864

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +             G          R  + G   +  +  E  A   +    +    + 
Sbjct: 865 TK-------------GRTAVSKYLPSRIYYGGTESIMFNALEAIAQQEEPKTPVLGASIT 911

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +      + +                                           +Q+
Sbjct: 912 DALNVKNLNTNQYMTSR------------------------------------VNWTIQS 935

Query: 605 ISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
              D   +L   M            + +TVHDE+     +T  +    L  +
Sbjct: 936 SGVDYLHLLIISMEYLIEKYGIDARLAITVHDELRYLVKETDKYKAALLLQI 987


>gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 224

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLA--RTNG 104
             +  + L +++D+T+  V HN+ F+       LG      +P ++ + T  +A  R  G
Sbjct: 66  KQIAQEFLDFVKDDTM--VIHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIARKRFPG 123

Query: 105 LPSSLKNACLALNFS 119
            P+SL   C   N  
Sbjct: 124 SPASLDALCRRFNID 138


>gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21]
 gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes]
          Length = 768

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 376 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 433

Query: 116 L 116
            
Sbjct: 434 Y 434


>gi|262342109|gb|ACY54565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 9/142 (6%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS  + +V ADL+GIE R+LA          A  +             +    
Sbjct: 11  EFRKLFKASPNQVMVGADLSGIELRMLAHY-------LARYDEGRYADVLLHGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
                 R   K +  A  Y  G     K+  +       +        +  +     E  
Sbjct: 64  DKIGISRRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKEIRQAYMDAVPGLEKL 123

Query: 482 HLWMQDQYPEFAVKDKLIGTAC 503
              ++ +  E    +   G  C
Sbjct: 124 VNAVKSKA-ESGFINLCDGRRC 144


>gi|229472453|gb|ACQ72741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAA------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|119174697|ref|XP_001239691.1| hypothetical protein CIMG_09312 [Coccidioides immitis RS]
          Length = 1142

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 70/343 (20%), Gaps = 69/343 (20%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G+SR G+          +  Q      +T+                     +++ + A  
Sbjct: 653 GSSRDGKSQNPASNLGFILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMVKAPP 712

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQ 428
           G   V AD+   E  + + + G+        N          KA  T +   +       
Sbjct: 713 GYVFVGADVDSEELWIAS-LVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGIS 771

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   KV      Y  G K   T+       +                             
Sbjct: 772 RNNAKVFNYGRIYGAGLKFAATLLRQFNPSIS----------------------DDQTKV 809

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                 K+                   G      +  E FA   +    +    +     
Sbjct: 810 IAANLYKETKGTRTIRKTISDSPFWRGGTESFVFNKLEEFAEQERPRTPVLGAGITEALM 869

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                    +                                           +Q+   D
Sbjct: 870 RRFINKGSFMTSR------------------------------------INWAIQSSGVD 893

Query: 609 ---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
              +L   M            + ++VHDEI     +   +   
Sbjct: 894 YLHLLIISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRAA 936


>gi|320037536|gb|EFW19473.1| DNA polymerase gamma [Coccidioides posadasii str. Silveira]
          Length = 1142

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 70/343 (20%), Gaps = 69/343 (20%)

Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372
           G+SR G+          +  Q      +T+                     +++ + A  
Sbjct: 653 GSSRDGKSQNPASNLGFILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMVKAPP 712

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQ 428
           G   V AD+   E  + + + G+        N          KA  T +   +       
Sbjct: 713 GYVFVGADVDSEELWIAS-LVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGIS 771

Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
           R   KV      Y  G K   T+       +                             
Sbjct: 772 RNNAKVFNYGRIYGAGLKFAATLLRQFNPSIS----------------------DDQTKV 809

Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
                 K+                   G      +  E FA   +    +    +     
Sbjct: 810 IAANLYKETKGTRTIRKTISDSPFWRGGTESFVFNKLEEFAEQERPRTPVLGAGITEALM 869

Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
                    +                                           +Q+   D
Sbjct: 870 RRFINKGSFMTSR------------------------------------INWAIQSSGVD 893

Query: 609 ---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
              +L   M            + ++VHDEI     +   +   
Sbjct: 894 YLHLLIISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRAA 936


>gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative)
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 1   MSKLFIDIET-----RSPQPLP-----------------KVGVWAYAEQAVITLCAYAWD 38
           M+ + +D ET      S   +                  K   +  +    +        
Sbjct: 1   MNFIAMDFETANHEKYSAVSIAIAIVRDNQVVDKFYSLIKPETYFSSRNTAVHGL----- 55

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
                + D  +   +   +    RD   + VAHN+ F+  + K      GI+ P    + 
Sbjct: 56  -RESDVIDAPKFPEIWQIISPLFRD-NKLVVAHNAAFDNNILKGTLAHYGIEEPHYMLLD 113

Query: 96  TSVLARTNGLP---SSLKNACLALNFSEHL 122
           T   +R          L      L  +   
Sbjct: 114 TVRTSRKLFPKFENHKLNTVANNLGITLDH 143


>gi|262342257|gb|ACY54639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                       +  E      L G   +++  +    
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGR--KIIVDSPHRA 152


>gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80]
 gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 16/125 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y     I      +  ++   + D  +       L +  
Sbjct: 246 EIAVDLE-----------HHDYRSYLGIVCLMQISSREKDW-IIDTLKLRDSLVVLNEIF 293

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            +  ++ V H +  + I  ++ LG+ +       T   ++  GLP  SL          +
Sbjct: 294 ANPNIVKVFHGAFMDIIWLQRDLGLYV--VSLFDTYHASKKLGLPRFSLAYLLENYANFK 351

Query: 121 HLTKM 125
              K 
Sbjct: 352 TSKKY 356


>gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 39/151 (25%)

Query: 1   MSKLFIDIETRS-PQPLPKVGVWAYA-------------------------EQAVITLCA 34
           M ++ +D ET           V   A                         E   +    
Sbjct: 1   MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPERPMPQEAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGI-DIPS 90
              DD    L D+ + + + +D + ++ D+  + + HN+ F+        + +G   +P 
Sbjct: 61  ---DD---FLRDKPKFAEIAADFVAFIGDDAKLVI-HNASFDMKFLNAELRMVGHATMPY 113

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
            R + T  +AR+    +  SL   C      
Sbjct: 114 SRAVDTLEIARSMFPGAQNSLDALCRRFRID 144


>gi|262212133|gb|ACY35683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|229472243|gb|ACQ72636.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472435|gb|ACQ72732.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472469|gb|ACQ72749.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472473|gb|ACQ72751.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472481|gb|ACQ72755.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472489|gb|ACQ72759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472497|gb|ACQ72763.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472575|gb|ACQ72802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
 gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 41/152 (26%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWAYA--------EQAVITLCAY 35
           M ++ +D ET    P                 L    +  Y         +   +   + 
Sbjct: 1   MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQRDIDPDAQRVHGISL 60

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP----- 89
              +            A+  ++  +LRD     + HN+ F+      +   + +P     
Sbjct: 61  DMLEGKPVF------KAVAGEIADFLRDAE--LIIHNAAFDIGFLNAEFARVGLPATQKV 112

Query: 90  SKRWICTSVLARTN--GLPSSLKNACLALNFS 119
           +   I T  +AR    G  ++L   C   +  
Sbjct: 113 AGNVIDTLAMAREIFPGKRNNLDALCDRFDID 144


>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 43/154 (27%)

Query: 1   MSKLFIDIETRSP-----QPLPKVG-------------------VWAYAEQA--VITLCA 34
           M ++ +D ET          + ++G                        EQ    +T   
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGID 87
             + D+     D      +  + L ++  +    + HN+ F+               G  
Sbjct: 61  LEFLDDK---PDFA---QIADEFLAFI--DGAELIIHNAAFDLGFLDNELSLLGPQYGKI 112

Query: 88  IPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
                 I T V+A  R  G  +SL   C  L   
Sbjct: 113 TDRCTVIDTLVMARERFPGQRNSLDALCRRLGVD 146


>gi|229472213|gb|ACQ72621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKV---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIRLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|262212217|gb|ACY35725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 13/149 (8%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
            G +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +      
Sbjct: 5   QGPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDI 58

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
                DK+    R + K +  A  Y  G +            L   +   K     + + 
Sbjct: 59  HQVNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYI 114

Query: 477 QAESHHLW---MQDQYPEFAVKDKLIGTA 502
           +A            +  E      L G  
Sbjct: 115 EAIDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
 gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
          Length = 392

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 32/164 (19%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L ID E     T                   + L   A  +  V +          S 
Sbjct: 19  KVLAIDTEFMREKTYW---------------PKLCLIQLATPERAVAVDPLRLHD--LSA 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------PSSL 109
           L    +DE ++ + H S  +  +    +G          T + A   G        P  +
Sbjct: 62  LNVLFQDENILKLFHASRQDLEIINIEMG--CLPAPIFDTQIAAALLGHTTQIGYGPLVM 119

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
               + L            + L     + ++D   Y     + +
Sbjct: 120 NELGVHLK-KADSYTDWSRRPLTKSQLQYALDDVIYLPKLYDSM 162


>gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 385

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 75/272 (27%), Gaps = 45/272 (16%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + +D E     T                   + L   A  DE   +    E   +   L
Sbjct: 22  YVTVDTEFMREKTYW---------------PQLCLVQVAGPDEAAAIDPLAEGMDLTP-L 65

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L D  V+ V H +  +  +F    G          T + A   G      +      
Sbjct: 66  FELLHDPGVLKVFHAARQDVEIFVHLTGAV--PAPLFDTQIAAMVCGFG---DSV----G 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +            LI +     ID        +      +    Y   DV   R  +++L
Sbjct: 117 YET----------LITKLTSARIDKSSRFTDWSQRPLTERQL-SYALSDVTHLRPAYEKL 165

Query: 178 IPLSDGERDLWLLDQT----INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                       LD+      +   YR+D +   +  ++  ++ + L             
Sbjct: 166 RRRLAKTGREHWLDEENVILADPATYRVDPEEAWRRLKVRTEKPRFLAVLKEVAAWRERE 225

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265
           + R+       L     +++   +  T++ + 
Sbjct: 226 AQRKDIPRNRVLRDEAIVEIAAHAPTTVEDLA 257


>gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes]
          Length = 811

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 376 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 433

Query: 116 L 116
            
Sbjct: 434 Y 434


>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
          Length = 679

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 31/193 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTLEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++         EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQL------EYALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLLDQTIN 195
            E     L + +N
Sbjct: 169 REGRTSWLTEEMN 181


>gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes]
 gi|114553918|ref|XP_001136533.1| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
          Length = 885

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 397

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A   +  +  D        + L + + D  V+ V H +  +  +F      D
Sbjct: 37  PQLCLVQVA-GPDEARAIDPLAPDMDLAPLFELMADTNVLKVFHAARQDVEIFLHLA--D 93

Query: 88  IPSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                   T + A   G   S   +     L            KA I +  + +  S   
Sbjct: 94  AIPTPIFDTQIAAMVCGFGDSVGYETLASQLA-----------KARIDKSMRFTDWSIRP 142

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI----NDRGYRI 201
              +           +Y   DV   R  +++L+   +    +  L + +        YR+
Sbjct: 143 LSEKQ---------IQYALADVTHLRVAYEKLVRKVEKNGRIEWLSEEMALLTEPGTYRV 193

Query: 202 DLDLVLKLQE 211
           D +   +  +
Sbjct: 194 DPENAWRRLK 203


>gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45]
 gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45]
          Length = 385

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    DE   L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAFPGKGDENAVLVDPLVDGLDL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             LL+  R+  V+ V H +  +  +F   +   +       T V A   G          
Sbjct: 67  EPLLELFRNTAVVKVFHAARQDLEIF--FIDHGVIPDPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ R  K ++D        +      +   +Y   DV   R ++
Sbjct: 118 QVGYET----------LVKRIAKQALDKSSRFTDWSRRPLT-EAQKKYALADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EYLAAELERTGRARWV 182


>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
 gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
          Length = 940

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 31/147 (21%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQ----- 50
             + +D+ET          + ++G     E   I    A ++ +  V++    E+     
Sbjct: 4   RFIVVDVETTGHSVAKGDRIIQIGA-VVIENGEIIERFA-SFVNPEVEIPPFIEELTGIN 61

Query: 51  ----------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS 97
                       +  +LL    +  V  VAHN  F+    K      G   P  +   T 
Sbjct: 62  QAMVEHAPTFKELAVELLPLFEN--VGFVAHNVPFDLSFLKNQFELIGEKFPKMKCYDTV 119

Query: 98  VLARTNGL---PSSLKNACLALNFSEH 121
            L+R          L +   +L  S  
Sbjct: 120 ELSRMLLPKEESYKLGHLAFSLGLSHD 146


>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
 gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
          Length = 398

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 64  PQLGLIQM-FDGENLSLIDPTVMDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 119

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 120 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 173

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 174 LEYAAADVFYLLPMYEKLVERVTQAGWWE-AALQESELQVAKRTKVSNPELAYLDIKGAW 232

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 233 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 281


>gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385]
 gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2]
 gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|307207302|gb|EFN85052.1| DNA polymerase subunit gamma-1, mitochondrial [Harpegnathos saltator]
          Length = 1161

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 90/317 (28%), Gaps = 37/317 (11%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV- 388
            +P+   S  +  + ++      + A P       +RS + A  G  +V AD+   E  + 
Sbjct: 762  IPQVVVSGTLTRRAVERTWMTASNASP-ERIGSELRSMVQAPPGYNIVGADVDSQELWIA 820

Query: 389  -----LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443
                                       +      +     V    R   KV+  A  Y  
Sbjct: 821  SMLGDAHHSGSIHGATPFGWMTLIGTKSNGTDMHSVTAKAV-GISRDHAKVINYARIYGA 879

Query: 444  GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503
            G K  + +       +       KS   F   +  +   L  +            +    
Sbjct: 880  GQKFAEQLLKQFNPSMTDAEAAAKSRKMFTLTKGKKVFRLKAE-----------FVNDNI 928

Query: 504  ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
            E +       +Q      K L E F      GGS SA     +  +          +   
Sbjct: 929  EDIPYTSFQAYQIAKLYGKTLQEMFQRSEWVGGSESA-MFNRLEEIASSERPVTPFLNSR 987

Query: 564  SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN 620
             SR L  ++   D ++L                    +VQ+ + D   ++   M+   ++
Sbjct: 988  LSRALEVTNTDNDDNFL--------------PTKINWVVQSGAVDFLHLMLVSMRWLMRD 1033

Query: 621  GYDIVLTVHDEIVSETP 637
                 L+ HDE+    P
Sbjct: 1034 NARFCLSFHDEVRYLVP 1050



 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 49/161 (30%), Gaps = 16/161 (9%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM- 125
           + V HN  ++R   K+   ++    R++ T  L        +     L ++  E   K  
Sbjct: 257 IVVGHNVSYDRSRIKEQYWMNCTGTRFLDTMSL-HVCVSGLNSYQRSLLMSKKEDSEKDD 315

Query: 126 ----------EEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                      E   L               + T  +    + +   YC  DV AT  + 
Sbjct: 316 WQFNTSLNNLTEVHKLYCGYEISKQPRDIFVEGTLEDVKNDFNMLMSYCASDVVATHNVL 375

Query: 175 KRLIPLSDGERDLWLLDQTINDRGY---RIDLDLVLKLQEL 212
             + PL        +    + + G     ++ +    L+E 
Sbjct: 376 VNVFPLFQERFPHPVTLAGMLELGSAYLPVNSNWQRYLKEA 416


>gi|262342259|gb|ACY54640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212171|gb|ACY35702.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + + +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVETVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGVWAYAEQAVIT-----LCA----YAWDDEPVKLW- 45
           M+ + +D ET      S   +      A   Q  +      L      ++  +  +    
Sbjct: 1   MNFVAMDFETANHEKHSAVSMA----LAVVRQNEVVDEFYSLIQPETYFSARNTAIHGIR 56

Query: 46  --DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
             D  +    P    Q   L  E  + VAHN+ F+  + +      GI+ P    + T  
Sbjct: 57  EQDVAQAPKFPEIWAQVSPLFTEDKLVVAHNAPFDHGVLQGTLAYYGIEAPHYMLLDTVR 116

Query: 99  LARTNGLP---SSLKNACLALNFSEHL 122
            +R          L      L  +   
Sbjct: 117 SSRQLFPHFRNHKLNTVAENLGITLDH 143


>gi|114553920|ref|XP_001136452.1| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes]
          Length = 860

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|168060140|ref|XP_001782056.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666467|gb|EDQ53120.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 319

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 43/183 (23%), Gaps = 23/183 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LR 62
           +  D E      L + G         + +   A+D+  V L D            +  L 
Sbjct: 30  IGFDCE---GVDLARYG--------RLCVMQLAFDN-AVYLVDAVLGGNALMQSCKLGLE 77

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              ++ V H+   +          +I       T +                        
Sbjct: 78  SPYIIKVCHDCKRDSEAL--YFQYNIKLNNVFDTQIAFSLLEEQRGKNWMPDDY----IS 131

Query: 123 TKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQ-LFGEYCKRDVEATRELFKRLI 178
                       +A   K  +        +    + W  +       DV     +++R++
Sbjct: 132 FVDLLADERYCGVAYDEKEEVRMLLRKDPQFWAHRPWTVMMKRVAADDVRFLLCIYERMV 191

Query: 179 PLS 181
              
Sbjct: 192 KSL 194


>gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4]
 gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4]
          Length = 368

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 42/200 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L +D E     T       K+G+    +   + L       +PV + D +        
Sbjct: 23  KVLMLDTEFVRTRTYY----AKLGLIQVYDGETLALI------DPVAVSDLSA------- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L  + ++ V H+   +  +  +        K    + + A   G    +       
Sbjct: 66  FWALLERDDMISVLHSCSEDLEVLARYG--RCQPKVLFDSQIAAAFCGWGHGM------- 116

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A +   C G         T            +Y   DV+    L+ +
Sbjct: 117 -----------GYAKLVEHCLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQ 165

Query: 177 LIPLSDGERDLWLLDQTIND 196
           L+        +  L +    
Sbjct: 166 LLEKLQESGRMPWLLEEGER 185


>gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419]
 gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419]
          Length = 383

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 64/224 (28%), Gaps = 35/224 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + ID E      L +   W       + L   A  D  V +          +     +
Sbjct: 19  SYITIDTE-----FLRETTFW-----PELCLIQMASPDMAVIVDPMAPG-IDLASFFALM 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  V+ V H +  +  +    LG ++       T V A   G   S             
Sbjct: 68  GNADVVKVFHAARQDIEII-HHLG-NLIPHPLFDTQVAAMVCGFGDS------------V 113

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  +    +  K S  +        +          Y   DV   R+++  L+   
Sbjct: 114 SYDQLVSRIKNEQIDKSSRFTDWSRRPLTDKQLD------YALADVTHLRDIYHYLVQEL 167

Query: 182 DGERDLWLLDQTI----NDRGYRIDLDLVLKLQELIAQERKKLD 221
           + E     L + +    N   Y +  D   +  ++  ++  +L 
Sbjct: 168 EREGRSSWLAEEMAILENRETYDLHPDNAWQRLKMRVKKPIELA 211


>gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
 gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 55  SDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA-RTNGLPSS 108
             +    RD  +  + V HN+ F+        K  G    +  +I T  L+    G P S
Sbjct: 80  DTVYDLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTLDLSEEIFGRPHS 139

Query: 109 LKNACLALNFSEH 121
           LK     L     
Sbjct: 140 LKWLSERLGIKTT 152


>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
 gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 100 kDa;
           Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
           autoantigen 2
 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
 gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
 gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
 gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens]
 gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
 gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
 gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
 gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
          Length = 885

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 22/121 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVIT---------------LCAYAWDD-EPVK 43
           M    ID ET + +      +     +   +                          P  
Sbjct: 12  MKFTAIDFETANEKRNSPCSIGIVVVKDGHVVEKSHHLIRPKEMRFMPINIGIHGIRPAM 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           +    E   +   +  Y  D   + +AHN+ F+  + +K      I++P   +ICT  LA
Sbjct: 72  VEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNIELPEFNYICTMKLA 129

Query: 101 R 101
           R
Sbjct: 130 R 130


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 83/311 (26%), Gaps = 62/311 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV----KLWD------------ 46
            +  D+ET     +    +        I       +   +    K  D            
Sbjct: 481 YVVFDLETTGLSNVRDKII-------EIAGIKIK-NGNKIGEFQKFIDPQQKLTKTITNI 532

Query: 47  ------RTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
                   +       +L       +  + VAHN+ F+    K   K L I +  K  I 
Sbjct: 533 TNITDEMLQGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIID 592

Query: 96  TSVLART----NGLPSSLKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
           T  L++          SLK          E   +        +      ID         
Sbjct: 593 TMALSQRYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMIDQLADPTKDP 652

Query: 151 NHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDGERDLWLLDQTI----NDRGYRIDLDL 205
            + Q    F    K D +  R      L+    G R+L+ L         ++  R+    
Sbjct: 653 KNEQVINFFELQEKIDHKYERPYHINILVANQTGYRNLFELLSNALTKDFNKRPRVLKSN 712

Query: 206 VLKLQE----------------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
           +  L++                 + Q   KL   I       ++  +    L   L    
Sbjct: 713 LANLRQGLLVGSGCMNSNIFEIALNQNIFKLQRAISFYDYIEVQPPQAYKHLIHDL-GKN 771

Query: 250 GIDLVDMSEGT 260
           GI +++ +  T
Sbjct: 772 GIQIIETTLKT 782


>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
          Length = 549

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 12/105 (11%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
             L      +Y   A +   + A  D    + D          L     D  +  V H +
Sbjct: 231 VDLEAHAEHSYESIACLVQISTADVD---YVVDALALRFELRALAPAFADPNIRKVFH-A 286

Query: 74  --LFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLKNA 112
               +    ++  GI +       T       AR  G P  L   
Sbjct: 287 CQGVDIPRLQRDFGIFV--VNVFDTQEAARCAARVLGAPLGLVAL 329


>gi|262212155|gb|ACY35694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTACELVKKAWRAK 513
                       +  E      L G   +++  +    
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGR--KIIVDSPHRA 152


>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 341

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 64/269 (23%), Gaps = 34/269 (12%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   +     +  +   L     D T   V H +  + +  ++  GI I   
Sbjct: 32  LMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYI--C 89

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
               T   +R   +           +             L+  FC  + +    +     
Sbjct: 90  NMFDTGQASRVLKM--------ERYSLQH----------LLQHFCGVTANKEYQNADWRA 131

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
                 +  +Y + D      ++  +         L+ L +        +          
Sbjct: 132 RPLP-DVMIKYGREDTHYLLYIYDLMR------IKLFELSKESESPDDPLLEVYQRSYNV 184

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMSEGTLKSI 264
            +    K L  +   L    +R +         +  +          +           +
Sbjct: 185 CMQLYEKDLLTENSFLNIKGLRGAGFNGQQLAVVSGLYEWRDVLARAEDESTGYILPNKV 244

Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLN 293
           +             L RL +  S +  + 
Sbjct: 245 ILLIAKHMPVTASNLRRLIAERSRLPYVE 273


>gi|229472505|gb|ACQ72767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
          Length = 899

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 376 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 433

Query: 116 L 116
            
Sbjct: 434 Y 434


>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
          Length = 884

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
          Length = 673

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
 gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
 gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
 gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens]
          Length = 860

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 28/164 (17%)

Query: 3   KLFIDIE---TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           ++ +D+E   TR+   L               L   +  D+   + D  +       L +
Sbjct: 258 EIAVDLEHHDTRTYIGLTC-------------LMQLSTRDDD-YIVDTLKLRGQLEPLNE 303

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
              +  V+ V H +  + I  ++ LG+ I       T   A+                 +
Sbjct: 304 IFTNPRVIKVLHGAFMDIIWLQRDLGLYI--VGLFDTFYAAQALEF--------ARFGLA 353

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
             L K     A            P       ++ ++   +  YC
Sbjct: 354 HILKKYVNFDADKQYQMADWRLRPLPKEML-DYARSDTHYLLYC 396


>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
          Length = 910

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 25/232 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E  S +    +            L   +   E   + D  E  +  S L +  
Sbjct: 326 KEFALDLEHHSYRSFLGLT----------CLMQISTRTED-FIIDTLELRSDMSILNETF 374

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACL-ALNFS 119
            D  ++ V H +  +    +K  G+ +       T   AR   L   SL +      +  
Sbjct: 375 TDPAIVKVLHGADSDVEWLQKDFGLYL--VNMFDTHQAARLLNLGKHSLDHLLKLYCSVD 432

Query: 120 EHLTKMEEG-------KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                           + +I                       W+   E   +     + 
Sbjct: 433 ADKQYQLADWRIRPLPEEMIQYAR--DDTHYLLYIYDKMREALWERGNEQPTQLKVVWQR 490

Query: 173 LFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                L              +    +   ++   +   + L +   K   ++
Sbjct: 491 SRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFSWRDKTARQE 542


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 44/155 (28%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAE------------------QAV---ITLCA 34
           M ++ +D ET   +P     + ++G     +                   A    +   +
Sbjct: 1   MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPERQIDAEAEAVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID------- 87
            A+  +  +  +R         L++YLR      + HN+ F+        G+        
Sbjct: 61  NAFLADKPRFAERA------ERLVEYLR--GAELIIHNAAFDVGFLDHEFGLWRGAEAPR 112

Query: 88  -IPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
                    + ++AR         L   C      
Sbjct: 113 IADLCTVTDSLLMARKLHPGQRNGLDALCKRYAID 147


>gi|262212381|gb|ACY35807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 40/141 (28%), Gaps = 14/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G+ +V ADL+GIE R+L+          A  +                 DK+
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHY-------LARYDTYFGDNLLNGDIHQLNADKI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L       K     E + +A      
Sbjct: 66  -GITRKLVKTVTYAFLYGAGNEKI---GYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSD 121

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                           + G  
Sbjct: 122 LLSAVKSAANRGFVKGIDGRK 142


>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
          Length = 884

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 376 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 433

Query: 116 L 116
            
Sbjct: 434 Y 434


>gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9]
 gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9]
          Length = 374

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 61/222 (27%), Gaps = 19/222 (8%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69
           T S   L    V        + L    +D + + L D  E   +       LRD++++ V
Sbjct: 21  THSVVMLDTEFVRTRTLYPKLGLIQM-FDGDNLVLIDPIEIDDLTP-FWDLLRDQSIIKV 78

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNACLALNFSEHLTK 124
            H    +  +F+   G        I T ++A   G        SL      +        
Sbjct: 79  LHACGEDLEVFQHHAG--CLPTPMIDTQLMAAFLGHGVSAGFGSL--VSEYVGVDLEK-- 132

Query: 125 MEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
              G+A      +  +     Y      ++           +       L      L   
Sbjct: 133 ---GEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMEALELECAALMQK 189

Query: 184 ERDLWLLDQTIN--DRGYRIDLDLVLKLQELIAQERKKLDED 223
                 LD+        ++++   +  LQ+       +  + 
Sbjct: 190 RTKGIDLDKAYRLVKNAWQLNPKQLAVLQQAAKWRILEARKR 231


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 37/148 (25%), Gaps = 40/148 (27%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------------LWD 46
            +  D+ET     +             I L A    D  V                   D
Sbjct: 414 FVVFDVETTGLSAMYNKI---------IELAAVKIYDGDVIDKFEAFADPKHLLSATTID 464

Query: 47  RT-------EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWI 94
            T            P  +++   D     + VAHN+ F+        ++   +  +   I
Sbjct: 465 LTGITDEMVRGKPDPEQVVKEFMDWAGGSILVAHNASFDIGFLNATLRSGNHEESTLPVI 524

Query: 95  CTSVLARTNGLP---SSLKNACLALNFS 119
            T  LAR          L       +  
Sbjct: 525 DTLELARVLMPSLKNHRLNTLAKRFDIE 552


>gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57]
          Length = 287

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSIRYSLSFLKELLGF 208


>gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
 gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
          Length = 235

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQ----PLPKVG----VWAYA--EQAVITL--CAYAWDDEPVKLWDRT 48
           M ++  D ET         + ++G    V  Y    Q  + L        DE V +   T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 49  EQ--------SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICT 96
            +        S +  + L+++  +    +AHN+ F+        K+     I     + T
Sbjct: 61  NERLKNEKSFSDIVDEFLEFI--KGATMIAHNASFDIGFINAELKRVNKPLISVDNILDT 118

Query: 97  SVLARTNGL--PSSLKNACLALNFS 119
             +AR      P+SL   C      
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGID 143


>gi|229472269|gb|ACQ72649.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDIIKLNQIEAYQLAFIHDE 192


>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
          Length = 888

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 34/183 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E  S +    +            L   +   E   + D  E  +  S L +  
Sbjct: 304 KEFALDLEHHSYRSFLGLT----------CLMQISTRTED-FIIDTLELRSDMSILNETF 352

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  +    +K  G+ +       T   AR   L   SL +         
Sbjct: 353 TDPAIVKVLHGADSDVEWLQKDFGLYL--VNMFDTHQAARLLNLGKHSLDHL-------- 402

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L       +     Y           +   +Y + D      ++ ++   
Sbjct: 403 ----------LKLYCSVDADKQ--YQLADWRIRPLPEEMIQYARDDTHYLLYIYDKMREA 450

Query: 181 SDG 183
              
Sbjct: 451 LWE 453


>gi|262342207|gb|ACY54614.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVITLCAYAWDD--EPVKLWD----------- 46
           +D ET    P    + ++G   + YA+   I      +    +P +              
Sbjct: 97  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGITD 156

Query: 47  -RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                  +P + L  L  E  + +AHN+ F+R   ++   I   +K W C+
Sbjct: 157 EMVRGQTIPREKLDALIAEADIIIAHNAGFDRPFLERFS-IAFANKPWACS 206


>gi|229472281|gb|ACQ72655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212143|gb|ACY35688.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212169|gb|ACY35701.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212175|gb|ACY35704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212179|gb|ACY35706.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212233|gb|ACY35733.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212337|gb|ACY35785.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342211|gb|ACY54616.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342215|gb|ACY54618.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342217|gb|ACY54619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342223|gb|ACY54622.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342231|gb|ACY54626.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342253|gb|ACY54637.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342255|gb|ACY54638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRS----PQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPS 55
           M+ + +D+ET         + ++G         I        +         TE + + +
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVK-VRDGKIVDRFTQLVNPGRRVSARITELTGISN 67

Query: 56  DLL---QYLRD---------ETVMCVAHNSLFERILF-KKTLGIDIPSKRW----ICTSV 98
           ++L     + D         E    V HN+ F+          +   S R+    I T  
Sbjct: 68  EMLEDQPVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMH 127

Query: 99  LARTNGLP--SSLKNACLALNF 118
           + R         L +       
Sbjct: 128 IDRLLFPSERHRLVDLIQRYGI 149


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T         
Sbjct: 28  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIHGLTSDVLRDAPL 87

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +    L  +  + VAHN++F+  +  +               CT  L++   LP
Sbjct: 88  FPDVAEEFAARL--DGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIALSKALDLP 145

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 146 LPNHKLESLAAHFGV 160


>gi|262342225|gb|ACY54623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212139|gb|ACY35686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212161|gb|ACY35697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            ++   R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSNHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212123|gb|ACY35678.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 196

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVI-----TLC-----AYAWDDEPVKLWDRTE 49
           M  + ID ET + Q      V  A+ E   +      L       ++  +  +       
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEDGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 50  QSAMPS--DLLQYLRDE--TVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLART 102
               P   +++    ++      +AHN+ F+  +++ +L +     P   ++C+  +A+ 
Sbjct: 61  VEDAPEFPEVMDEFEEDFRGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMAQR 120

Query: 103 NGLP---SSLKNACLALNFS 119
                    L      L   
Sbjct: 121 IWPHFLSHRLNLIAEHLGLR 140


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T         
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIHGLTSDVLRDAPL 85

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +    L  +  + VAHN++F+  +  +               CT  L++   LP
Sbjct: 86  FPDVAEEFAARL--DGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIALSKALDLP 143

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 144 LPNHKLESLAAHFGV 158


>gi|241956434|ref|XP_002420937.1| DNA polymerase gamma subunit, putative; mitochondrial DNA
           polymerase catalytic subunit, putative [Candida
           dubliniensis CD36]
 gi|223644280|emb|CAX41091.1| DNA polymerase gamma subunit, putative [Candida dubliniensis CD36]
          Length = 1329

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 63/532 (11%), Positives = 126/532 (23%), Gaps = 88/532 (16%)

Query: 140 IDSPPYDCTRANH---VQAWQLFGEYCKRDVEATR--ELFKRLIPLSDGERDLWLLDQTI 194
            D  PY  +           +LF      ++  T    +   L+ L      L+ +D   
Sbjct: 504 KDGTPYKKSAYMTGYPEWYRELFKTSKGEEMNLTLKTRITPLLLRLKWEGHPLFWVDSQG 563

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254
                  D D  +         + KL E+ +  T  ++     T      LF    +   
Sbjct: 564 WCFKVPFDDDNEISRLTEKKYVQPKLTEEEINQTRDVLL----TKGKSYILF---KVPHP 616

Query: 255 DMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT--LSEAVSSDGRLRGTLQF 311
           +        ILS   +       L      ++    L           +           
Sbjct: 617 NGPSSRCTHILSKLYVRNFEDGTLTSEYDYATKILNLNNEASYWLGNRNRIKDQFVVYNQ 676

Query: 312 YGASR---TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
            G ++   T + S        +     +   +T+                     ++S I
Sbjct: 677 LGKNKFFDTIKESKEHSSMGIIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLI 736

Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS--- 425
            A  G   V AD+   E  + + + G+                   K+  T +   +   
Sbjct: 737 EAPKGYCFVGADVDSEELWIAS-LVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTASI 795

Query: 426 -KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R   KV      Y  G K    +      ++     +            A   +  
Sbjct: 796 LGISRNDAKVFNYGRIYGAGVKFATRLLKQFNGNITDEEADK----------VARQLYDS 845

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
            +             G          +  + G   +  +  E  A   +    +    + 
Sbjct: 846 TK-------------GRTAMTKYLPSKIYYGGTESIMFNTLEAIAQQEEPKTPVLGASIT 892

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
           +   +      + +                                           +Q+
Sbjct: 893 DALNVKNLNTNQYMTSR------------------------------------VNWTIQS 916

Query: 605 ISRD---ILCEGM-KNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
              D   +L   M     K G    + +TVHDE+     +T  +    L  +
Sbjct: 917 SGVDYLHLLIISMEYLIEKYGIEARLAITVHDELRYLVKETDKYKAALLLQI 968


>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
 gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
 gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 102/397 (25%), Gaps = 59/397 (14%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET     L     ++Y  Q    L   +   +   + D  +  A    +        ++ 
Sbjct: 265 ETEIAVDLEHHDFYSY--QGFTCLMQISTRTQD-FIVDCLKVRANMYLMAPVFLQPNIVK 321

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           V H +  +    +K  G+ I       TS+  +   +P SL                   
Sbjct: 322 VFHGAREDVRWLQKDFGLYI--VNLFDTSIALQNLHMPHSLAF----------------- 362

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI---------- 178
              +  FC+  ++               +    Y ++D      ++ RL           
Sbjct: 363 --AVDHFCQVKLNKKYQTADWRVRPIPAE-MVSYAQQDTHFLLYVYDRLKQLLLNCEARA 419

Query: 179 ---PLSDGERDLWLLDQTINDRGYRIDLDL---------VLKLQELIAQERKKLDEDIVK 226
               +         L          +D D+         +  L     Q  +++      
Sbjct: 420 SVGNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQVAREIFNWRDM 479

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  S      +   L + T +          + +   S ++   +  ++  L    
Sbjct: 480 AAREADDSPSAVMHISCVLSIATKLPT-----SANEVLKCCSPVSVAVRTNVMKLLQIVK 534

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRT----GRWSGCVFQPQNLPRQERSEEILTQ 342
            AI   ++L +  + D + +       A R        +G +   +              
Sbjct: 535 DAIGSADSLKDGANGDVKPKPLPNVGVALRYMGVHRSMTGTLPSIEQ-RADPAFTVEDAH 593

Query: 343 TIQALNRGETIADPLGLASDCVRSCI--IASNGKKLV 377
            +              +A+   R     IA  G  +V
Sbjct: 594 VVVRTEPSAWFETMRNVAAILRRKPYYPIALPGHDVV 630


>gi|262212221|gb|ACY35727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DKV    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKV-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
 gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
          Length = 393

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 62/235 (26%), Gaps = 41/235 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           L +D E      +     +         L     D     L D        P  L + + 
Sbjct: 32  LAVDTE-----FMRSQTYYPITG-----LIQVN-DGNTSYLIDPLAFDDFTP--LAELME 78

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ V H+   +  +F + LGI    K  + T + +   G   S              
Sbjct: 79  NPGVLKVLHSCSEDLEVFHRFLGIV--PKHMLDTQIASALCGYGFS-------------- 122

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                G   +     G         +   H        +Y   DVE   +L   L+    
Sbjct: 123 ----VGFGKLVHAVLGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLK 178

Query: 183 GERDLWLLDQTIN-DRGYRIDLDLVLKLQE------LIAQERKKLDEDIVKLTDG 230
               L  + +          D   V            ++Q +  + + + +  + 
Sbjct: 179 NLGRLTWVAEDCEAMLRQFADNQAVDNSDARIKQAWRLSQRQLAILKKLAQWREE 233


>gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H]
 gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 66/235 (28%), Gaps = 39/235 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L ID E      +    ++     A + L      ++   +         P      L
Sbjct: 23  KVLAIDTE-----FVRTRTLY-----AKLGLLQVCDGEQLALIDPLAIDDLAP--FWALL 70

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +E +  V H    +  +F             I + ++    G   SL  A +       
Sbjct: 71  TNENITKVLHACSEDLEVFLTAGN--CKPVNLIDSQIMMSFLGHGLSLGYAAMV-----K 123

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--------- 172
                E     +R    +                  LF  Y K   E T+          
Sbjct: 124 HFTDIELDKSESRTD-WTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQIE 182

Query: 173 ----LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               + K+  P+ + E     L+  +N   +R++   +  L+ L +   ++  + 
Sbjct: 183 TQSMIDKKFTPIIESE---MYLNIKMN---WRLNPKQLNLLKYLASWRFQQAKKR 231


>gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021]
 gi|307301014|ref|ZP_07580783.1| ribonuclease D [Sinorhizobium meliloti BL225C]
 gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306903969|gb|EFN34555.1| ribonuclease D [Sinorhizobium meliloti BL225C]
          Length = 383

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 41/198 (20%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S + ID E     T  P                + L   A  +  V +          + 
Sbjct: 19  SYITIDTEFLRETTFWPV---------------LCLIQMASPEMAVIVDPMAPG-IDLAP 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               + +  V+ V H +  +  +    LG ++       T V A   G   S        
Sbjct: 63  FFALMSNPDVVKVFHAARQDIEII-HHLG-NLIPHPIFDTQVAAMVCGFGDS-------- 112

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                       +    +  K S  +        +          Y   DV   R++++ 
Sbjct: 113 ----VSYDQLVNRIKNEQIDKSSRFTDWSRRPLTDKQLD------YALADVTHLRDIYQY 162

Query: 177 LIPLSDGERDLWLLDQTI 194
           L    D E     L + +
Sbjct: 163 LTKELDREGRSSWLAEEM 180


>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
 gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
          Length = 377

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 32/194 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + ID E           +        + L   A  +    +     +   P  L   +
Sbjct: 20  SIVAIDTE----------FLRERTYHPRLCLVQVATPEVSALVDPLEIEDLSP--LAALM 67

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE    + H    +  +    L  D+       T V A   G    +            
Sbjct: 68  ADEGTRKIFHACSQDMEVLLNAL--DVLPNPIFDTQVAAAFLGERVQMSY---------- 115

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L+  FC  S+         ++     +   +Y + DV      ++ +    
Sbjct: 116 -------DGLVKAFCGVSLPKTASLTDWSHRPLTAEQM-DYAEDDVRYLICAYEVMAERL 167

Query: 182 DGERDLWLLDQTIN 195
           +    +      + 
Sbjct: 168 EQRGRMSWALDEMR 181


>gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS]
 gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            ++ +D ET     L         E   + L A       + ++   E+ +    L    
Sbjct: 3   RQIVLDTETTG---LSAENGDRVIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHG 59

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTL-GIDIPSKRWI----- 94
               +LRD+                   + HN+ F+     K      +P  R       
Sbjct: 60  LTTDFLRDKPKFATLANDIIEYLRGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVT 119

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T  +A+    G  +SL   C      
Sbjct: 120 DTLAMAKLVYPGKRNSLDALCDRFGVD 146


>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
           [Neurospora crassa]
          Length = 822

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y     ++L   +  ++   +            L +  
Sbjct: 248 KEIALDLE--------HHDFRSYTGL--LSLMQISTREKDWVIDTLQPWRHKLEVLNEVF 297

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
            +  ++ V H +  + I  ++ LG+ +       T       G P  SL   
Sbjct: 298 ANPNIVKVLHGAFMDVIWLQRDLGLYV--VGLFDTYHACAVLGYPGRSLGYL 347


>gi|229472371|gb|ACQ72700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + V++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEVRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +  + M          +     +  VHDE
Sbjct: 160 SAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 26/147 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------- 51
               D ET    P    + ++G     +  ++    +    +P     R           
Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITDK 333

Query: 52  ------AMPSDLLQYLR-DETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                  +     ++    +  + VAHN+ F+    ++    +G+       + T +++ 
Sbjct: 334 MVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFD-HPIVDTVLVSA 392

Query: 102 TN---GLPSSLKNACLALNFSEHLTKM 125
                     L   C  L       K 
Sbjct: 393 IIFGTTERHMLDVVCERLGIR-IEKKD 418


>gi|327292550|ref|XP_003230973.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
 gi|326466779|gb|EGD92232.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
          Length = 1137

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 75/329 (22%), Gaps = 74/329 (22%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   +  T                    +++ + A  G   V AD+   E 
Sbjct: 671 PQVIPMGTITRRAVENT-----WLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEEL 725

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 726 WIAS-LVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIYG 784

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K   T+       + +                        +    +   + K   T 
Sbjct: 785 AGLKFAATLLRQFNPSMSETE---------------------TKAVAAKLYKETKGTRTT 823

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
             ++ +    +  G      +  E FA   +    +    +              +    
Sbjct: 824 RRILSENPFLRG-GTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGGFMTSR- 881

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KN 616
                                                  +Q+   D   +L   M     
Sbjct: 882 -----------------------------------INWAIQSSGVDYLHLLIISMDYLIR 906

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                  + +TVHDEI     +T  +   
Sbjct: 907 RFNLDARLAITVHDEIRYVVRETDKYKAA 935


>gi|262212365|gb|ACY35799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+   ++ +  V   A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKIGISRKLVKTVTN-AFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                    +  +  E      L G  
Sbjct: 117 IDGLDKLLEVIRKASERGFIKALDGRK 143


>gi|262212079|gb|ACY35656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212083|gb|ACY35658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
 gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 39  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 95  CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 148

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K   + T+  +     L + E  +    +  N     +D+    
Sbjct: 149 LEYAAADVFYLLPMYEKLVEQVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 207

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 208 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 256


>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
 gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
          Length = 373

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 39  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 95  CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 148

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K   + T+  +     L + E  +    +  N     +D+    
Sbjct: 149 LEYAAADVFYLLPMYEKLVEQVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 207

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 208 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 256


>gi|262342229|gb|ACY54625.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212135|gb|ACY35684.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342221|gb|ACY54621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 14  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 69

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 70  CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 123

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K   + T+  +     L + E  +    +  N     +D+    
Sbjct: 124 LEYAAADVFYLLPMYEKLVEQVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 182

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 183 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 231


>gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
 gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
          Length = 242

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 41/158 (25%)

Query: 1   MSKLFIDIETR----SPQP-LPKVGV-------------WAY--------AEQAVITLCA 34
           M ++ +D ET     S    + ++G                Y        A    I    
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPKRTMPAGAFGIHGIG 60

Query: 35  YAWDDEP-----VKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID 87
               + P      ++        + +++ Q   D       V HN+ F+       LG  
Sbjct: 61  PDLLEPPQTPTAGQV--LLRDKPVFAEIAQAFVDFIGDSKLVIHNAAFDMKFLNAELGWV 118

Query: 88  ----IPSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
               +P  + + T  +AR    G P+SL   C      
Sbjct: 119 NRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGID 156


>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
 gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
          Length = 373

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 43/157 (27%), Gaps = 28/157 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A + L    +D E + L D  E   +   L   L++E+V  V H    +  +F+   G  
Sbjct: 39  ARLGLIQM-FDGETLALVDPVEIDDLTP-LWDLLKNESVTKVLHACGEDLEVFQHYAG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 I T ++A   G   S    K     L                            
Sbjct: 95  CMPTPMIDTQIMAAFLGYGLSTGFAKLVSDYLGIELDK---------------------G 133

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              T             Y   DV     LF++L    
Sbjct: 134 EARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAEL 170


>gi|262342213|gb|ACY54617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKAVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262342115|gb|ACY54568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 8/138 (5%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G+ +V ADL+GIE R+L+          A  +                 DK+
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHY-------LARYDTYFGDNLLNGDVHQLNTDKI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +             +  ++  +    F +     S  L 
Sbjct: 66  -GITRKLVKTVTYAFLYGAGNEKIGYSYDRLLSSQKAKAKGREIKEAFIEAIPGLSDLLS 124

Query: 485 MQDQYPEFAVKDKLIGTA 502
                        + G  
Sbjct: 125 AVKSAANRGFVKGIDGRK 142


>gi|262212207|gb|ACY35720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342263|gb|ACY54642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDVLDKLLGAIKKASERGFIKALDGRK 143


>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
 gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A + L    +D E + L D  E   +   L   L++E+V  V H    +  +F+   G  
Sbjct: 39  ARLGLIQM-FDGETLALVDPVEIDDLTP-LWDLLKNESVTKVLHACGEDLEVFQHYAG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 I T ++A   G   S    K     L           G++      +   D   
Sbjct: 95  CMPTPMIDTQIMAAFLGYGLSTGFAKLVSDYLGVDLDK-----GESRTDWMARPLSDKQL 149

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRE 172
            D   A+      LF +      +   E
Sbjct: 150 -DYAAADVHYLLPLFEKLQAELAQTEWE 176


>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
 gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
          Length = 373

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 43/157 (27%), Gaps = 28/157 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A + L    +D E + L D  E   +   L   L++E+V  V H    +  +F+   G  
Sbjct: 39  ARLGLIQM-FDGETLALVDPVEIDDLTP-LWDLLKNESVTKVLHACGEDLEVFQHYAG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 I T ++A   G   S    K     L                            
Sbjct: 95  CMPTPMIDTQIMAAFLGYGLSTGFAKLVSDYLGIELDK---------------------G 133

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              T             Y   DV     LF++L    
Sbjct: 134 EARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAEL 170


>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
          Length = 884

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 376 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 433

Query: 116 L 116
            
Sbjct: 434 Y 434


>gi|262212125|gb|ACY35679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|164428985|ref|XP_957747.2| DNA polymerase gamma [Neurospora crassa OR74A]
 gi|166214919|sp|Q9Y767|DPOG_NEUCR RecName: Full=DNA polymerase gamma, mitochondrial; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit;
           Flags: Precursor
 gi|157072364|gb|EAA28511.2| DNA polymerase gamma [Neurospora crassa OR74A]
          Length = 1456

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 76/316 (24%), Gaps = 74/316 (23%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   + +T                    +++ + A  G   V AD+   E 
Sbjct: 692 PQVIPMGTITRRAVERT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSEEL 746

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          K+  T +   +       R   KV      Y 
Sbjct: 747 WIAS-VVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTASILGITRNDAKVFNYGRIYG 805

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K    +       L +      +T  ++  + A+                       
Sbjct: 806 AGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAK-------------------TNRK 846

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
               +  WR    G      ++ E FA   +    +    +              +    
Sbjct: 847 SLYKRPFWRG---GTESFVFNMLEEFAEQERPRTPVLGAGITEALMSRWVSKGGFLTSR- 902

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
                                                  +Q+   D   +L   M   T+
Sbjct: 903 -----------------------------------INWAIQSSGVDYLHLLIIAMDYLTR 927

Query: 620 N---GYDIVLTVHDEI 632
                  + +TVHDEI
Sbjct: 928 RFNLACRLAITVHDEI 943


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 26/140 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQA---VITLC--------AYAWDDEPVKLWDR 47
            +  D+ET         + + G            I           A+  +   +     
Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIVKNNTITQKIQFFLQTKRELSAFTVESSHINNEML 466

Query: 48  TEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWI--CTSVLAR 101
                       + + L+D+  + VAHN+ F+    K K   + + + +     T  L+ 
Sbjct: 467 KNGYAQEEGIKKIYEILKDK--IAVAHNANFDINFCKEKFSKLGLDNSKIFGLDTLALSY 524

Query: 102 TNGL---PSSLKNACLALNF 118
                    SL       N 
Sbjct: 525 FLNPDEFRHSLGYVAKRFNI 544


>gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
 gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
          Length = 389

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           +   + D   +        + + +E V+ V H +  +  +     GI         T V 
Sbjct: 55  DEAVVIDALAEGIDLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIV--PHPIFDTQVA 112

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 113 AMVLGYGDS 121


>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 202

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 25/121 (20%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITL--CAYAWD-----DEPVKLWDRT 48
           M+ +F D ET   +P     L  + V   A+          +A D      E V  +   
Sbjct: 1   MNMIFFDTETTGLRPGNICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPSAEKVHGFTVE 60

Query: 49  EQSAM---------PSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT 96
               +           + L   ++  ++ + HN  F+        K     +  K   CT
Sbjct: 61  TLYKLSSGMNFKDHLDEFLNDFQNADIL-IGHNVNFDIKFLSSEFKNCNEILNIKHTFCT 119

Query: 97  S 97
            
Sbjct: 120 M 120


>gi|262212225|gb|ACY35729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GIPRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 14  PQLGLIQM-FDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 69

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 70  CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 123

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 124 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 182

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 183 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 231


>gi|262212301|gb|ACY35767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRILVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|229472305|gb|ACQ72667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472551|gb|ACQ72790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212067|gb|ACY35650.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212073|gb|ACY35653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212087|gb|ACY35660.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212103|gb|ACY35668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212107|gb|ACY35670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212117|gb|ACY35675.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212149|gb|ACY35691.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212151|gb|ACY35692.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212163|gb|ACY35698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212185|gb|ACY35709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212199|gb|ACY35716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342209|gb|ACY54615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342219|gb|ACY54620.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342245|gb|ACY54633.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|195154607|ref|XP_002018213.1| GL17589 [Drosophila persimilis]
 gi|194114009|gb|EDW36052.1| GL17589 [Drosophila persimilis]
          Length = 831

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 48/169 (28%), Gaps = 22/169 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  E V+ V H+   +        G
Sbjct: 581 GEITLIEIGTARGEAFLFDVQSCPAMVTDGGLKTVLEHEQVIKVIHDCRNDAANLYLQFG 640

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 641 ILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 697

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             K             Y       +   QLFG   ++     R+LF  L
Sbjct: 698 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGSLARQIRPENRQLFSEL 746


>gi|4455007|gb|AAD21034.1| DNA polymerase gamma [Neurospora crassa]
          Length = 1305

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 76/316 (24%), Gaps = 74/316 (23%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   + +T                    +++ + A  G   V AD+   E 
Sbjct: 692 PQVIPMGTITRRAVERT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSEEL 746

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          K+  T +   +       R   KV      Y 
Sbjct: 747 WIAS-VVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTASILGITRNDAKVFNYGRIYG 805

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K    +       L +      +T  ++  + A+                       
Sbjct: 806 AGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAK-------------------TNRK 846

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
               +  WR    G      ++ E FA   +    +    +              +    
Sbjct: 847 SLYKRPFWRG---GTESFVFNMLEEFAEQERPRTPVLGAGITEALMSRWVSKGGFLTSR- 902

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATK 619
                                                  +Q+   D   +L   M   T+
Sbjct: 903 -----------------------------------INWAIQSSGVDYLHLLIIAMDYLTR 927

Query: 620 N---GYDIVLTVHDEI 632
                  + +TVHDEI
Sbjct: 928 RFNLACRLAITVHDEI 943


>gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586]
 gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586]
          Length = 381

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-FDGENLSLIDPTVMDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T   +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLLERVTHAGWWE-AALQESELQVAKRIKVSNPEHAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 103/397 (25%), Gaps = 59/397 (14%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET     L     ++Y  Q    L   +   +   + D  +  A    +        ++ 
Sbjct: 265 ETEIAVDLEHHDFYSY--QGFTCLMQISTRTQD-FIVDCLKVRANMYLMAPVFLQPNIVK 321

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           V H +  +    +K  G+ I       TS+  +   +P SL                   
Sbjct: 322 VFHGAREDVRWLQKDFGLYI--VNLFDTSIALQNLHMPHSLAF----------------- 362

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI---------- 178
              +  FC+  ++               +    Y ++D      ++ RL           
Sbjct: 363 --AVDHFCQVKLNKKYQTADWRVRPIPAE-MVSYAQQDTHFLLYVYDRLKQLLLNCEARA 419

Query: 179 ---PLSDGERDLWLLDQTINDRGYRIDLDL---------VLKLQELIAQERKKLDEDIVK 226
               +         L          +D D+         +  L     Q  +++      
Sbjct: 420 SVGNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQVAREIFNWRDM 479

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  S      +   L + T +          + +   S ++   +  ++  L    
Sbjct: 480 AAREADDSPSAVMHISCVLSIATKLPT-----SANEVLKCCSPVSVAVRTNVMKLLQIVK 534

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRT----GRWSGCVFQPQNLPRQERSEEILTQ 342
            AI   ++L +  + D + +       A R        +G +   +            T 
Sbjct: 535 DAIGSADSLKDGANGDVKPKPLPNVGVALRYMGVHRSMTGTLPSIEQ-RADTAFTVEDTH 593

Query: 343 TIQALNRGETIADPLGLASDCVRSCI--IASNGKKLV 377
            +              +A+   R     IA  G  +V
Sbjct: 594 VVVRTEPSAWFETMRNVAAILRRKPYYPIALPGHDVV 630


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 33/148 (22%)

Query: 2   SKLFIDIETRSP-----QPLPKVGVWAYAEQAVITL----------CAYAWDDEPV---- 42
            ++ +D ET          + ++G     ++  ++            ++    + V    
Sbjct: 6   RQIVLDTETTGLEWSKGNRIVEIGAVELLDR-RLSGDKFHRYLKPDVSFESGAQEVTGLT 64

Query: 43  --KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGIDIPSKRW 93
              L D+ E S +  + L Y+       + HN+ F+               G        
Sbjct: 65  MEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITDRASV 122

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           + T V+AR    G  +SL   C  L   
Sbjct: 123 LDTLVMARERYPGQRNSLDALCKRLGVD 150


>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
 gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
          Length = 233

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  + + CT 
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPFYCTM 139

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 174


>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 25/187 (13%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
           E+        +    Y     + L    A +D  V L D        + L     D  V+
Sbjct: 31  ESFVTVDTEFMREQTYW--PELCLVQIGATND--VVLIDALADGIDLTPLKNLFVDTAVL 86

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
            V H +  +  +F      D        T V A   G                     + 
Sbjct: 87  KVFHAARQDLEIFLHLF--DALPTPLFDTQVAAMVAGFG------------------DQV 126

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
           G   +     G +    +  T  +          Y   DV   R +++RL+   + E+ L
Sbjct: 127 GYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRL 186

Query: 188 WLLDQTI 194
             +   +
Sbjct: 187 DWVAAEM 193


>gi|229472321|gb|ACQ72675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 40/140 (28%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R   I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRELFITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +        +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEIRRAYLDAIPGLERLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +         + G  
Sbjct: 125 EAVKTKAKVDRSLRAIDGRK 144


>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
           21211]
 gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
           21211]
          Length = 174

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 24/142 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA---EQAVIT---LCAYAWDDE---PVKL------- 44
           M  +  D+ET    P     V   A       +          + E   P  +       
Sbjct: 1   MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPERDIPWYVSRVHGIR 60

Query: 45  -WDRTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
                    +   L  +L+   T   VAHN+ F+    +      G++   +R ICT  L
Sbjct: 61  NAHVASAPRITEALPAFLQYAGTTPVVAHNAAFDTGFIRAAAARQGLEWRPQREICTLQL 120

Query: 100 ARTNGL---PSSLKNACLALNF 118
           +R          L      L  
Sbjct: 121 SRRAFPREKSHKLDALAQRLGL 142


>gi|262212131|gb|ACY35682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +         G  L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYGKPLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAVKKASERGFIKALDGRK 143


>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
 gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
 gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +         +       + 
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGLARMGHRHGALED 165


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR- 101
           D  +   +  +    L +     +  N+ F+    +   K LG  +     + T   AR 
Sbjct: 149 DAADIYTVLEEAWPLLDNA--TLIIQNASFDLGFLQPRFKRLGYRLD-NPVVDTIHWARK 205

Query: 102 -TNGLP-SSLKNACLALNFSEHL 122
              GL    L +   A +     
Sbjct: 206 ALPGLTKRGLDSLAWAFDLGPIP 228


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T +       
Sbjct: 22  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 81

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
              +  +L + L  +  + VAHN++F+  +  +     GI  P +R +CT  LA+   LP
Sbjct: 82  FPEIAGELSRRL--DGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALP 139

Query: 107 ---SSLKNACLALNFS 119
                L+         
Sbjct: 140 LPNHKLETLAAHFGVE 155


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 31/144 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWA-------YAEQAVITLCAYAWDDEPVKLW--------- 45
           + + +D ET S +      +           ++          + +    W         
Sbjct: 12  NFIAMDFETASAKRFSACSLAITIVRNSQIQDEFYTL-----INPQTPFFWRNTQVHGIH 66

Query: 46  --DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSV 98
             D  +    P     +Q       + +AHN+ F+  + K       I+ P  + + T  
Sbjct: 67  ERDVKDAPTFPEVWEHIQEFFTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTLK 126

Query: 99  LARTN---GLPSSLKNACLALNFS 119
            +R          L   C  LN  
Sbjct: 127 TSRQLFPAFPNHKLNTICDQLNID 150


>gi|198458527|ref|XP_002138553.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
 gi|198136373|gb|EDY69111.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
          Length = 830

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 48/169 (28%), Gaps = 22/169 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  E V+ V H+   +        G
Sbjct: 580 GEITLIEIGTARGEAFLFDVQSCPAMVTDGGLKTVLEHEQVIKVIHDCRNDAANLYLQFG 639

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 640 ILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 696

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             K             Y       +   QLFG   ++     R+LF  L
Sbjct: 697 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGSLARQIRPENRQLFSEL 745


>gi|262212113|gb|ACY35673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDVLDKLLGAIKKASERGFIKALDGRK 143


>gi|262212085|gb|ACY35659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    + +  V   A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKIGISHKLVKTV-TYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 12/116 (10%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
           T         L                     E  A I       +        + 
Sbjct: 540 TINTEYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMVQQMKELGVANHKD 595


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 12/116 (10%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
           T         L                     E  A I       +        + 
Sbjct: 540 TINTEYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMVQQMKELGVANHKD 595


>gi|307317748|ref|ZP_07597186.1| ribonuclease D [Sinorhizobium meliloti AK83]
 gi|306896510|gb|EFN27258.1| ribonuclease D [Sinorhizobium meliloti AK83]
          Length = 383

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 41/198 (20%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S + ID E     T  P                + L   A  +  V +          + 
Sbjct: 19  SYITIDTEFLRETTFWPV---------------LCLIQMASPEMAVIVDPMAPG-IDLAP 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               + +  V+ V H +  +  +    LG ++       T V A   G   S        
Sbjct: 63  FFALMSNPDVVKVFHAARQDIEII-HHLG-NLIPHPIFDTQVAAMVCGFGDS-------- 112

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                       +    +  K S  +        +          Y   DV   R++++ 
Sbjct: 113 ----VSYDQLVNRIKNEQIDKSSRFTDWSRRPLTDKQLD------YALADVTHLRDIYQY 162

Query: 177 LIPLSDGERDLWLLDQTI 194
           L    D E     L + +
Sbjct: 163 LTKELDREGRSSWLAEEM 180


>gi|262212187|gb|ACY35710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKAVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|229472361|gb|ACQ72695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ + AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALLTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDEKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVRSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 33/149 (22%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDD-E 40
           M ++ +D ET   +P                  L    +  Y   +  I   A A     
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPEREIDAGALAVHGIS 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK--------KTLGIDIPSKR 92
              L D+     +  + L    D   + + HN+ F+             +   I+     
Sbjct: 61  SEFLADKPTFDKVVDEFL-AFVDGAELVI-HNAPFDVGFLNHELRRLGTRYGTIE-QRCG 117

Query: 93  WICTSVLAR--TNGLPSSLKNACLALNFS 119
            + T V+AR    G  +SL   C      
Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVE 146


>gi|307172596|gb|EFN63955.1| Exonuclease 3'-5' domain-like-containing protein 1 [Camponotus
           floridanus]
          Length = 651

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 59/257 (22%), Gaps = 28/257 (10%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             +TL           ++D      +  D  L + L    V+ V H+   + +       
Sbjct: 258 GQLTLVQIGTMSGQAYMFDLFTCPRLVQDGGLQKLLEHPHVIKVIHDCRNDSVNLYNQFT 317

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      +L   C       +  K +  K +  +
Sbjct: 318 ITL--MNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCNPLKEQL-KNIYRK 374

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGE--YCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
             +     P                    Y         E+      L +          
Sbjct: 375 DQRYWSRRPMTRDMLIYASSDVLSLVPQVYNAMSRLIKPEVQGLFAELCEE--------- 425

Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252
            I       D+    K Q  +  E   L + + + T   I  S +   L  ++ L     
Sbjct: 426 QIQMHIRPADVK-ARKRQRKMETEMVDLKKRMEEATSKNIVLSNREIRLLRWMDLTEDEK 484

Query: 253 LVDMSEGTLKSILSHSN 269
               +   +   L    
Sbjct: 485 EKLKANHKVARKLEKLE 501


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRS----PQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPS 55
           M+ + +D+ET         + ++G         I        +         TE + + +
Sbjct: 11  MNYISLDLETTGFSAQNDRITEIGAVK-VRDGKIVDRFTQLVNPGRRVSARITELTGISN 69

Query: 56  DLL---QYLRD---------ETVMCVAHNSLFERILF-KKTLGIDIPSKRW----ICTSV 98
           ++L     + D         E    V HN+ F+          +   S R+    I T  
Sbjct: 70  EMLEDQPVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMH 129

Query: 99  LARTNGLP--SSLKNACLALNF 118
           + R         L +       
Sbjct: 130 IDRLLFPSERHRLVDLIQRYGI 151


>gi|262342227|gb|ACY54624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +   +R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRLRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYAVILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + + +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVRTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 233

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 29/145 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA--YA-------------WDDEPVKL- 44
           M ++ +D ET    P  K G     E A I L     +              D+    + 
Sbjct: 1   MRQIVLDTETTGLDP--KQG-HRIIEVAAIELNGRKVSERTFHRYINPEREIDEGAAAVH 57

Query: 45  ---WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
               DR +     +++   L +       + HN+ F+       L   G+ + +   I T
Sbjct: 58  GLTLDRLQDEPKFAEVAPALLEFIAGAELIIHNAPFDIGFLNAELALAGLPLLNNPVIDT 117

Query: 97  SVLARTNGLPS--SLKNACLALNFS 119
             +A+        +L   C      
Sbjct: 118 LKVAKELHPGKKNNLNALCDRYQVD 142


>gi|229472279|gb|ACQ72654.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRGLFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSRAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|298705697|emb|CBJ28935.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
 gi|299115153|emb|CBN75519.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
          Length = 727

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 14/93 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------AMPS 55
           + L +D E      L        +          +  D     +     +        P 
Sbjct: 113 NVLGLDCE--WEPSLAGTTPNPVST------VQLSLPDGTAYCFQLQRGNKKTTSSNFPK 164

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            L   L + ++  V  N   +    ++  GI++
Sbjct: 165 ALQNLLENPSIAKVGVNINSDATYLERDYGIEV 197


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307]
 gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307]
          Length = 395

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 45/201 (22%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW----DDEPVKLWDRTEQSAM 53
            + +D E     T                   + L   A+    DD+ V L        +
Sbjct: 32  YVTVDTEFLRERTYYS---------------KLCLIQLAYMGDGDDDAVLLDPLANGLDL 76

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            + L    +DE V+ V H +  +  +F   +   I  K    T V A   G         
Sbjct: 77  -APLYDLFKDENVVKVFHAARQDLEIF--FVDQGIIPKPLFDTQVAAMVCGF-------G 126

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
               +            L+ +  K ++D        +    +      Y   DV   R +
Sbjct: 127 EQAGYET----------LVRKIAKDNVDKSSRFTDWSRRPLSDAQ-KTYALADVTHLRVI 175

Query: 174 FKRLIPLSDGERDLWLLDQTI 194
           ++ L    D       + + +
Sbjct: 176 YEYLSAELDKSGRKKWVAEEM 196


>gi|195489284|ref|XP_002092670.1| GE11539 [Drosophila yakuba]
 gi|194178771|gb|EDW92382.1| GE11539 [Drosophila yakuba]
          Length = 1009

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             ITL           L+D     AM +D  L   L  + V+ V H+   +        G
Sbjct: 576 GEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVIHDCRNDAANLYLQFG 635

Query: 86  IDIPSKRWICTSVLARTNGLPS-----------SLKNACLALNFSEHLTKMEEGKALIAR 134
           I +       T                      SL + C   N   +  K +  K +  R
Sbjct: 636 ILLR--NVFDTQSAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCNPIKDQL-KQIYRR 692

Query: 135 FCKGSID------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
             K             Y       +   QLFG   ++     R LF  L           
Sbjct: 693 DQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRALFSELCTE-------- 744

Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
            +   I     +I      K+   ++  ++KL +
Sbjct: 745 QILMQIKPNEVKI-RKKQRKVSTEVSDLKQKLAQ 777


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 534

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 594

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 595 NDSMGQGDAYK 605


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
 gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 42/152 (27%)

Query: 2   SKLFIDIETRSPQPLP--------------------------KVGVWAYAEQAVITLCAY 35
            ++ +D ET     +                             G  ++ +   +     
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGIT- 61

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----- 90
                   L D+        ++ +YL+      + HN+ F+       L +         
Sbjct: 62  -----TEFLKDKPRFEEKIDEIWEYLQ--GAELIIHNAPFDLGFLNNELKLAKRPPLKQC 114

Query: 91  -KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
               + T V+A+    G  +SL + C  L   
Sbjct: 115 VGGVLDTLVMAKEMYPGKRNSLDSLCDRLGVD 146


>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
          Length = 323

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           FID+ET    PL    +   A   +   I      L    +  D   +L     +  +  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYITELTGIAYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 486 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 543

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 544 TINTEYGKHGLNFLAKKYGVE 564


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 534

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 594

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 595 NDSMGQGDAYK 605


>gi|156041228|ref|XP_001587600.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980]
 gi|154695976|gb|EDN95714.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1146

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 67/299 (22%), Gaps = 69/299 (23%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  ++S I A  G   V AD+   E  + + + G+        N          KA
Sbjct: 700 KNRVGSELKSMIKAPPGYCFVGADVDSEELWIAS-LVGDAQFKLHGGNAVGFMTLEGTKA 758

Query: 417 FNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T +   +       R   KV      Y  G K   T+       L +   +  + + +
Sbjct: 759 AGTDLHSRTASILGITRNDAKVFNYGRIYGAGLKFASTLLRQFNPSLSESETSETAANLY 818

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
           +  +  +                              WR    G      +  E FA   
Sbjct: 819 KATKGVK-------------------TNRKALHPGPFWRG---GTESFVFNKLEEFAEQE 856

Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
           +    +    +              +                                  
Sbjct: 857 KPRTPVLGAGITQALMARYVSKGGFMTSR------------------------------- 885

Query: 593 YGGKLTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                    +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 886 -----INWAIQSSGVDYLHLLIVSMDYLIRRYNINARLAITVHDEIRYLVKDDDKYRAA 939


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 34/147 (23%)

Query: 2   SKLFIDIETRSPQP-----------------LPKVGVWAYAEQAVITLC---AYAWD--- 38
            ++ +D ET    P                 LP    +         L    A       
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
           D+ VK   +     +  DL+++L D     +AHN+ F+R      +G       P  RWI
Sbjct: 62  DDKVKDAPKFH--EVVDDLMEFLGDA--PLIAHNANFDRNFIDFEIGRIGRTPPPQDRWI 117

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T  LA  R  G+ +SL   C     S
Sbjct: 118 DTLALAQKRFPGMANSLDALCKRYKIS 144


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|262342261|gb|ACY54641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 6   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 60  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 115

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 116 IDGLDKLLEAIKKASERGFIKALDGRK 142


>gi|262342233|gb|ACY54627.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 167

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212389|gb|ACY35811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212205|gb|ACY35719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLRSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|262212191|gb|ACY35712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE RVL+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRVLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
 gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
          Length = 229

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWAYAEQAV---------ITLCA 34
           M ++  D ET    P                 +P    +                +   +
Sbjct: 1   MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPERDMPAGAEAVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
            A+  +     D         +LL ++ D     +AHN+ F+       L +     +  
Sbjct: 61  AAFLSDKPLFRDTAH------ELLDFIGDA--PLIAHNAGFDFGFLNAELALCEREAVCM 112

Query: 91  KRWICTSVLA--RTNGLPSSLKNACLALNFS 119
            R I T  LA  R  G   SL   C      
Sbjct: 113 SRMIDTVALAKKRHPGAKLSLDALCTRYGID 143


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
 gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
          Length = 185

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 39/144 (27%), Gaps = 30/144 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYA---EQAVIT-----------------LCAYAWDDEPVKLW 45
            D+ET    P     V   A       +                       W  E +   
Sbjct: 14  FDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIHGI 73

Query: 46  D---RTEQSAMPSDLLQYLRDE-TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSV 98
                    ++   L ++L        VAHN  F+        +  G+    +R ICT  
Sbjct: 74  SNEMVVAAPSIAQVLPEFLEWAGDAPLVAHNIGFDSGFMRAAARHCGLRWAPQREICTVQ 133

Query: 99  LARTN---GLPSSLKNACLALNFS 119
           L+R         +L +    L  S
Sbjct: 134 LSRRAFPRERRHNLDSLAGRLGLS 157


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|229472589|gb|ACQ72809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 61/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L   +                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                              + +++A+     G+ +L   +                    
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|303251523|ref|ZP_07337698.1| hypothetical protein APP6_0727 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253716|ref|ZP_07535582.1| hypothetical protein appser6_22070 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649643|gb|EFL79824.1| hypothetical protein APP6_0727 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858828|gb|EFM90875.1| hypothetical protein appser6_22070 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 215

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 38/170 (22%)

Query: 28  AVITLCAYAWDDEPVKL-----WDRTEQS-AMPSDLLQYL-RDETVMC-----VAHN-SL 74
             I +   A +DE   L     W    +   + +    +L    +        + HN + 
Sbjct: 59  GEIVVIGVAINDEETVLFYREDWQSAGREVDILTRFNDFLREKASKCKTVPQFIGHNIAK 118

Query: 75  F-ERILFKKTLGIDIPS------KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127
           F +R +F++++   +        +    T       G   SL   C  L          E
Sbjct: 119 FDDRFIFQRSVINGVKPYYTASRQNTYDTMTEWAGYGGTVSLDKLCKVL--------DIE 170

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
            K  I                 A          EYC +DVE  R+++KR+
Sbjct: 171 QKGEIDGSKVWQYVQDGKIAEVA----------EYCAKDVERVRQIYKRM 210


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|154336623|ref|XP_001564547.1| exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 23/161 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S++ +D+E              Y+ Q +  L   +  +E   + D  +  ++   L    
Sbjct: 253 SEIAVDLE----------HHDFYSYQGITCLMQISTREED-FIVDCLQLRSLMGTLAPVF 301

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  +    +K     +    +  T V  +T  +P SL  A         
Sbjct: 302 LNPLILKVLHGAREDIRWLQK--DFSLYLVNFFDTGVALQTLHMPYSLAFAVDHF----- 354

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                    L  +F        P      ++ +    F  Y
Sbjct: 355 -----CQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLY 390


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 33/148 (22%)

Query: 2   SKLFIDIETRSP-----QPLPKVGVWAYAEQAVITL----------CAYAWDDEPV---- 42
            ++ +D ET          + ++G     ++  ++            ++    + V    
Sbjct: 6   RQIVLDTETTGLEWSKGNRIVEIGAVELLDR-RLSGDKFHRYLKPDVSFESGAQEVTGLT 64

Query: 43  --KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGIDIPSKRW 93
              L D+ E S +  + L Y+       + HN+ F+               G        
Sbjct: 65  MEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITDRASV 122

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           + T V+AR    G  +SL   C  L   
Sbjct: 123 LDTLVMARERYPGQRNSLDALCKRLGVD 150


>gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 196

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           M  + ID ET + Q      V  A+ E+  +T                   A     P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +  + +       +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 61  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RTNGLP---SSLKNACLALNFS 119
           +          L      L   
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGLR 140


>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
 gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
          Length = 381

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 44/176 (25%), Gaps = 27/176 (15%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET     L    +  Y E   + L   +       +         P  L   L    +  
Sbjct: 25  ETELALDLEADSMHHYRE--KVCLLQLSNRAGTWLVDPLRLSDLSP--LRVLLARPGLRT 80

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE 127
           V H   ++     +  GI +   +   T V A+  G     L                  
Sbjct: 81  VLHGGDYDIRSLHRDFGIVVQ--QMFDTMVAAQFTGATEFGLAALLREH----------F 128

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           G  L  RF K      P     A+          Y   D     EL  RL    + 
Sbjct: 129 GIELDKRFQKADWSKRPLTTEMAD----------YAAHDTAHLLELADRLHARLEQ 174


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVITLCAYAWDDEPVKLW-------------- 45
           M  + ID ET + +      +     +   I        +E   L               
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIV-------EEKYFLIKPCEMRFQPMNIWI 53

Query: 46  ------DRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW 93
                 D   +   + +  ++  Y+  +  + +AHN+ F+  + +K      I  P   +
Sbjct: 54  HGIRPEDVENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEY 111

Query: 94  ICTSVLA--RTNGLP-SSLKNACLALNFS 119
            CT V+A      LP   L     AL F 
Sbjct: 112 ACTVVMAKNYYKSLPNHKLGTVSEALGFE 140


>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
           suis ATCC 23445]
 gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           suis ATCC 23445]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
                D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 74  MTCYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 165


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVITLCAYAWDDEPVKLW-------------- 45
           M  + ID ET + +      +     +   I        +E   L               
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIV-------EEKYFLIKPCEMRFQPMNIWI 53

Query: 46  ------DRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW 93
                 D   +   + +  ++  Y+  +  + +AHN+ F+  + +K      I  P   +
Sbjct: 54  HGIRPEDVENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEY 111

Query: 94  ICTSVLA--RTNGLP-SSLKNACLALNFS 119
            CT V+A      LP   L     AL F 
Sbjct: 112 ACTVVMAKNYYKSLPNHKLGTVSEALGFE 140


>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 47/194 (24%), Gaps = 41/194 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            L ID E     T                   + L     D       D   ++     L
Sbjct: 49  FLAIDTEFMRERTYY---------------PQLCLIQVG-DGTKAVAIDPLAKNLNLEPL 92

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              +RDE+++ V H    +  +F   +G          T +     G           + 
Sbjct: 93  WSLMRDESIIKVFHAGNQDMEIFLNEMGG--LPSPVYDTQIAGLVCGH-------GDQIG 143

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +     K   GK +            P                 Y   DV    +++  +
Sbjct: 144 YDSL-VKSILGKNVDKTSRFTDWSKRP----------LTDRQISYALDDVIYLAQIYPIM 192

Query: 178 IPLSDGERDLWLLD 191
           +     E     LD
Sbjct: 193 LDKIASENRTNWLD 206


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Rhodobacter sphaeroides 2.4.1]
 gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131]
          Length = 229

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ- 59
           M ++ +D ET   +P          E   + L  +              +  MP++  + 
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 56

Query: 60  ------YLRDE---------------TVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
                 +LRD+                   V HN+ F+       LG      +   + +
Sbjct: 57  HGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRAGLPRLAPDQAL 116

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T  LA  R  G P++L   C      
Sbjct: 117 DTLALARQRFPGAPATLDALCRRFGVD 143


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++  +   I T  
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 534

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 594

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 595 NDSMGQGDAYK 605


>gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 229

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ- 59
           M ++ +D ET   +P          E   + L  +              +  MP++  + 
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 56

Query: 60  ------YLRDE---------------TVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
                 +LRD+                   V HN+ F+       LG      +   + +
Sbjct: 57  HGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRSGLPRLAPDQAL 116

Query: 95  CTSVLA--RTNGLPSSLKNACLALNFS 119
            T  LA  R  G P++L   C      
Sbjct: 117 DTLALARQRFPGAPATLDALCRRFGVD 143


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 21/135 (15%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT-------EQS 51
            DIET         + ++G        ++   +   + E   P  + D T       E  
Sbjct: 3   FDIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLINPEKEIPQVVVDLTGISNAMVENE 62

Query: 52  AMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTN--GL 105
               +++    D  +  + VAHN+ F+    ++    +  + +   + T VLAR     +
Sbjct: 63  PTIEEVILKFYDFAKDAVLVAHNAKFDISFIRREYANNNLVFNHPILDTLVLARATMSDM 122

Query: 106 PS-SLKNACLALNFS 119
              +L   C  L  S
Sbjct: 123 KRFNLGTLCKNLGVS 137


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 482 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEYGKHGLNFLAKKYGVE 560


>gi|229472407|gb|ACQ72718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFIPTPGQIMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDE-----------PVKLWDR 47
            + +D+ET         + ++G         I   +   D              +   D 
Sbjct: 23  FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSLTGITTADV 82

Query: 48  TEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA-RT 102
                + + + Q+L      + VAHN+ F+    ++    LG+D PS   + T  LA R 
Sbjct: 83  ETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTLARRV 142

Query: 103 NGLPS----SLKNACLALN 117
                     L      + 
Sbjct: 143 LDRSQVGSFKLSQLARYVG 161


>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
 gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     L         E   + L                       A A  
Sbjct: 4   MRQIVLDTETTG---LSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVH 60

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPS-----K 91
              V+   D+   + + +D+ ++++D     + HN+ F+          + +P       
Sbjct: 61  GITVEFLADKPRFAEVVNDIREFIQDAE--LIIHNAPFDLGFLDMEFQLLGLPPFRQHAG 118

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             I T   AR    G  +SL   C  L  S
Sbjct: 119 NVIDTLREARQMFPGKRNSLDALCDRLGIS 148


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 35/146 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             +  D+ET    P     V+    +    +       E  + +    +  +P+++ +  
Sbjct: 400 RYVVFDLETTGLSP-----VYNEIIEFGAVVIQDGIQTESHQFF-VKAKEPIPTEITKIT 453

Query: 61  -----LRDE-------------TVMC----VAHNSLFERILFKKTLGIDIPSK---RWIC 95
                + DE              ++     VAHN+ F+     +    +         I 
Sbjct: 454 NITQEMVDEQGIEATEAFYRISKIIKDSILVAHNAKFDFNFLAELFKKEASMTIDQPIID 513

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R         SLKN    +  
Sbjct: 514 TLQVSRFLNPSQKSHSLKNVSKLIGL 539


>gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 27/122 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA-----VITL--CAYAWDD-----EPVKLWDRT 48
           M  LF D ET   +P     +                    +  D+     E +  +   
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 49  ---------EQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWIC 95
                        + +D +  +L  + +  + HN  F+    K     LG         C
Sbjct: 61  KLYELSEGMHFEDLYADFINDFLEADFI--IGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 96  TS 97
           T 
Sbjct: 119 TM 120


>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/491 (9%), Positives = 126/491 (25%), Gaps = 64/491 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S++ +D+E      +  +GV          L   +   +   +        +   L    
Sbjct: 218 SEIAVDLE--HNHSISYLGVTC--------LIQLSTRTQDYIIDPFPLWKQLGDMLSVVF 267

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  +    ++  G+ I       T   +               L   ++
Sbjct: 268 TNPRIVKVFHGADNDVQWLQRDFGLYI--VNLFDTFQAS-------------KELLLMQN 312

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +      L++ +CK S D             + ++   Y + D      ++ R+    
Sbjct: 313 SFQF-----LLSEYCKKSTDKTYQTADWTQRPLSDEMIK-YAQIDTHYLLYIYDRMRQDL 366

Query: 182 DGERDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
                            I     R     +   ++ +  + + L   + K    +   + 
Sbjct: 367 KKLNKPNENLNNVPNYYIESVLKRSKDTALKIYKKPLQDQDQSLQTILNKQDRRMEAKNF 426

Query: 237 QTYALRMYLFLITGIDLVD----------------MSEGTLKSILSHSNITQLAKDLILN 280
                 + L    GI                        +++ + S     +   ++I  
Sbjct: 427 DLMVKLLELREELGIQYDQNPRYFLPNPFLFKLVESKPTSIQELKSQLGGDKYIHEIIKE 486

Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340
            L      +L+ +     V+     +                     Q  P +     + 
Sbjct: 487 NLWQFLKILLEFDEKVPIVNVIQEEQINTTQIQIEEMR------PSIQVEPLKIVQISVN 540

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
            +     N+            D ++S  +  +  KL+     G+ +++       +    
Sbjct: 541 IKKFDNQNKSVVKNHFRNENVDQIKSLFLCESPFKLLNVFYDGLGSQIFQSS---EGIKF 597

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV---MELALGYQGGAKVFKTMASHCGL 457
                +   + T        +++ +++Q+    V     L   Y               +
Sbjct: 598 IAKQQKIEKINTGDFIQLPKLEEQNRDQQKDQDVRLNNTLQNQYGTKILKRHQKIEQQKI 657

Query: 458 DLQQFSQNVKS 468
                S   + 
Sbjct: 658 QKSNISNRFEI 668


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
 gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 33/149 (22%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET   +P                  L    +  Y   +  I   A A     
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPEREIDAGALAVHGIS 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKR 92
            +   D+     +  + L    D   + + HN+ F+             +   I+     
Sbjct: 61  TEFLADKPTFDKVVDEFL-AFVDGAELVI-HNAPFDVGFLNHELRRLGARYGTIE-QRCG 117

Query: 93  WICTSVLAR--TNGLPSSLKNACLALNFS 119
            + T V+AR    G  ++L   C      
Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVE 146


>gi|328789753|ref|XP_395230.4| PREDICTED: DNA polymerase subunit gamma-1, mitochondrial [Apis
           mellifera]
          Length = 1093

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 78/291 (26%), Gaps = 48/291 (16%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +R+ I A  G  +V AD+   E  + + I    +K    A           KA  T 
Sbjct: 741 GSELRAMIQAPPGYNIVGADVDSQELWISSIIGDAYYKKIHGATPFGWMTLIGTKANETD 800

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +  V+       R   K++  A  Y  G K  +T+       +      +KS   F   +
Sbjct: 801 MHSVTAKAIGISRNQAKIINYARIYGAGQKFAETLLKQFNPSMTDSEATLKSRKMFTMTK 860

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACE-------LVKKAWRAKHQGVLQLWKDLTEGFA 529
             + + L  +                          +      K++ V      +     
Sbjct: 861 GKKIYKLKPEYINNNNDYDKLYSSYEAYKLSKLHGKIISEMFEKNKWVGGSESAMFNRLE 920

Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589
            +      ++    + +   +      +  +                             
Sbjct: 921 EIACNPHPVTPFLNSRLTVALESSVNDEKFL----------------------------- 951

Query: 590 ERTYGGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETP 637
                      +VQ+ + D   ++   MK   K+     L+ HDE+    P
Sbjct: 952 -----PTKINWVVQSGAVDFLHLMLVSMKWLMKDHARFCLSFHDEVRYLVP 997



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 32/247 (12%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTS--------VLAR---TNGLPSSLKNACLA 115
           + V HN  F+R   K+   +     R+I T         + +          + +     
Sbjct: 210 IIVGHNVSFDRSKIKEQYWLKQTGLRFIDTMSLHICIGGINSYQRSILNSTKNTE---EK 266

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPP---YDCTRANHVQAWQLFGEYCKRDVEATRE 172
            N     +                  +      + T  N  + +     YC  DV AT  
Sbjct: 267 CNLEMQTSLNNLADIHKFYCGSEINKNVREVFINGTLKNIKEDFNSLMIYCANDVIATHN 326

Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDLVLKLQ------ELIAQERKKLDED 223
           +  +L P+ +      +    + + G     I+ +    L       E +  E K +   
Sbjct: 327 VLCKLFPIFEERFPHPVTLAGMLELGTAYLPINSNWKKYLNESETTFEDLNYETKIVLTK 386

Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
                  ++ + +    L M+       +        +K+     N+  +++     R  
Sbjct: 387 RANAVCKLLHNKKYKEDLWMWD------EDWSTQMVKVKTQSLKKNLKNISQIQNAKRKK 440

Query: 284 SSGSAIL 290
            + +   
Sbjct: 441 ETKTQSY 447


>gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 70/262 (26%), Gaps = 31/262 (11%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           E+        +    Y     + L         + L D   +    + L     D  V+ 
Sbjct: 35  ESFVTVDTEFMREQTYW--PELCLVQIG-ATHDIVLIDALAEGIDLTPLKNLFADTAVLK 91

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           V H +  +  +F      D        T V A   G                     + G
Sbjct: 92  VFHAARQDLEIFLHLF--DALPTPLFDTQVAAMVAGFG------------------DQVG 131

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
              +     G +    +  T  +          Y   DV   R +++RL+   + E+ L 
Sbjct: 132 YDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLD 191

Query: 189 LLDQTINDRGYRI----DLDLVLKLQEL--IAQERKKLDEDIVKLTDGIIRSSRQTYALR 242
            +   + +         D +   +        +    +   I  L +   +         
Sbjct: 192 WVAAEMAELEDPATFRPDPEKQWERLRARTNNRRMLAVLRAIAALREREAQRVNVPRQ-- 249

Query: 243 MYLFLITGIDLVDMSEGTLKSI 264
             +   + +++   +  T +++
Sbjct: 250 RLVKDESLLEIAATTPSTPEAL 271


>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           K279a]
 gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
           maltophilia K279a]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 43/154 (27%)

Query: 1   MSKLFIDIETRSP-----QPLPKVG-------------------VWAYAEQA--VITLCA 34
           M ++ +D ET          + ++G                        EQ    +T   
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGID 87
             + D+  +         +  + L ++  +    + HN+ F+               G  
Sbjct: 61  LEFLDDKPEFA------QIADEFLAFI--DGAELIIHNAAFDLGFLDNELSLLGPQYGKI 112

Query: 88  IPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
                 I T  +A  R  G  +SL   C  L   
Sbjct: 113 TDRCTVIDTLAMARERFPGQRNSLDALCKRLGVD 146


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P          E   + +                       A A  
Sbjct: 1   MRQIVLDTETTGLNP---RSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG------IDIPSK 91
               +   D+ + +A+ ++L  Y+       + HN+ F+                +    
Sbjct: 58  GLTTEFLRDKPKFAAVAAELRDYI--SGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVS 115

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFS 119
             I T V A+        SL + C     S
Sbjct: 116 GVIDTLVQAKEMHPGKRNSLDSLCDRYGVS 145


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 20/133 (15%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +D+ET        +    V+    +  +     TL     D  PV +   T  +   + L
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDALEGAPL 85

Query: 58  LQYLRDE------TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            Q + DE        + VAHN++F+  +  +     G   P  + +CT VL++  GLP  
Sbjct: 86  FQDIADEFSSRLDGRVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSKELGLPLP 145

Query: 107 -SSLKNACLALNF 118
              L++       
Sbjct: 146 NHKLESLAAHFGV 158


>gi|262212373|gb|ACY35803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 36/142 (25%), Gaps = 13/142 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R    A+ G+ +V ADL+GIE R+LA          A  +             +      
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHY-------LARYDEGRYASILLHGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R   K +  A  Y  G              L +     K     + +  A      
Sbjct: 66  IGISRRQVKTVIYAFLYGAGDSK---PGRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTAC 503
                    E    +      C
Sbjct: 123 LVTAVKSKAESGYINLCDSRRC 144


>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 30/150 (20%)

Query: 1   MSKLFIDIETRSPQPLP-----------------KVGVWAYAEQAV--ITLCAYAWDD-E 40
           M ++ +D ET    P                       + Y       I   A+A     
Sbjct: 1   MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPERDIDAGAFAVHGLS 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS------KRWI 94
              L D+     +   L++++    +  V HN+ F+         +           + I
Sbjct: 61  REFLSDKPVFGNIAEQLIEFVDGAEI--VIHNAAFDLGFLDNEFALLKRPPFRGLASKVI 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFSEHL 122
            T + AR    G  +SL   C   + S   
Sbjct: 119 DTLLDARQMFPGKRNSLDALCERFSISNKH 148


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQS 51
           M  + ID ET            L  V      E+    I  C   +    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
                    +  ++  Y+  +  + +AHN+ F+  + +K      I  P   + CT V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 --RTNGLP-SSLKNACLALNFS 119
                 LP   L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
 gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
          Length = 230

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP--------------LPKVGVWAYAEQ------------AVITLCA 34
           M ++ +D ET    P              +  V                      +   +
Sbjct: 1   MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPERDMPLGAFEVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
                E +  +      A+  ++L++L D  V+ + HN+ F+        ++    +IP 
Sbjct: 61  ----SEFLSAYPVF--GALADEILEFLGD-AVLVI-HNASFDMKFINAELRRLNRPEIPM 112

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
            + + T  LAR    G  +SL   C      
Sbjct: 113 SQALDTVQLARRKYPGAQASLDALCRRFEID 143


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 28/145 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-----EPVKLWDRTEQ----- 50
           +  +  D ET    P     V   A   V+       +       P +    +       
Sbjct: 289 LKYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGI 348

Query: 51  -SAMPSDLLQYL---------RDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
             AM +D   +L          D  V+ +AHN+ F+   F +    +G        + T 
Sbjct: 349 TDAMVADAPDFLTAGRAFHGFADGAVL-IAHNAPFDMAFFYRKQAEIGARFD-HPVLDTV 406

Query: 98  VLARTN-GLP--SSLKNACLALNFS 119
           +L+    G     SL      LN +
Sbjct: 407 LLSAVIYGQTEQHSLDALAERLNVT 431


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|262212189|gb|ACY35711.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342241|gb|ACY54631.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDELDKLLEAIKKASERGFIKALDGRK 143


>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
 gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
          Length = 233

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 43/160 (26%)

Query: 1   MSKLFIDIETRSPQP-----LPKVG-------------------VWAYAEQA--VITLCA 34
           M ++ +D ET   +P     + ++G                        +Q    +    
Sbjct: 1   MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPDREIDQGAMEVHGIT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GID 87
             + ++  +  D      +  + L+++       V HN+ F+       L       G  
Sbjct: 61  NEFLEDKPRFVD------VVDEFLEFIE--GAELVIHNAPFDVGFLDHELSMLDSSKGKL 112

Query: 88  IPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
                 + T VLAR        SL   C          ++
Sbjct: 113 SDYCTVLDTLVLARQMHPGQRNSLDALCKRYEIDNSHREL 152


>gi|297825683|ref|XP_002880724.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326563|gb|EFH56983.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 342

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 58/240 (24%), Gaps = 43/240 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L + G         I   A++     + L D  E   +        L 
Sbjct: 58  IGFDCE---GVDLCRHGKLC------IMQIAFS---NAIYLVDVIEGGEVLMKACKPALE 105

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKN------- 111
              +  V H+   +        GI +     + T +         G    L +       
Sbjct: 106 STYITKVIHDCKRDSEALYFQFGIRLH--NVVDTQIAYSLIEEQEGRRRPLDDYISFVSL 163

Query: 112 AC--LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCK 164
                         +    K  +    +       Y        RA       L   Y K
Sbjct: 164 LADPRYCG---ISYEE---KEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHK 217

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +  +     L         L+       +     D   V  + + +  E + L+E+I
Sbjct: 218 MMGKLNQRSLWHLA----VRGALYCRCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEI 273


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 41/144 (28%), Gaps = 33/144 (22%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT---------LCAY--------AWDDEP 41
            +  D+ET    P    + ++G     E   I                      + DD  
Sbjct: 518 TVVFDLETTGFDPRVNHIIEIGAVK-IENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSM 576

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSV 98
           V   D      +    L + +D   + VAHN+ F+        K L I       I T  
Sbjct: 577 V--MDAKGIEEVLPQFLDFAKDA--ILVAHNADFDYHFVSTKAKALNIPFS-APVIDTVA 631

Query: 99  LARTNGLPSS---LKNACLALNFS 119
           L+R      +   L      L   
Sbjct: 632 LSRLLLPRLNRFKLDTVAKELKIE 655


>gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 300

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 43/154 (27%)

Query: 1   MSKLFIDIETRSPQPLP---------------------KVGVWAYA--------EQAVIT 31
           M  + +D ET    PL                      K     Y         E   I 
Sbjct: 53  MRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIH 112

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
                   +  K+ D+     +  + L ++       V HN+ F+       L I+   +
Sbjct: 113 GI------DNAKVKDQPTFREIAQEFLDFIE--GATLVIHNAPFDLGFIMNELRINNFPE 164

Query: 92  ----RWICTSVLARTNGLPS--SLKNACLALNFS 119
               + I T V AR        +L   C   N  
Sbjct: 165 IGHMQVIDTLVFAREKHPHQRNNLDALCDRYNIE 198


>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
 gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 45/155 (29%)

Query: 1   MSKLFIDIETRSPQ------------------PLPKVGVWAY--------AEQAVITLCA 34
           M ++ +D ET   +                   L       Y        A    +   +
Sbjct: 1   MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPEREVDAGAFAVHGIS 60

Query: 35  YA-WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI------D 87
            A  +D+PV          +  D L ++ D     + HN+ F+       L +       
Sbjct: 61  NAMLNDKPVFA-------RIVDDFLNFVGDAE--LIIHNAAFDIGFIDHELNMLRPGFGS 111

Query: 88  IPSK-RWICTSVLAR--TNGLPSSLKNACLALNFS 119
           I  +   I T +LAR    G  ++L   C      
Sbjct: 112 IKGRCGVIDTLLLARNKHPGQKNNLDALCKRYGVD 146


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
           +  + VAHN+ F+    ++     G+D      + T +L+       +P +L   C  L
Sbjct: 337 KDSVLVAHNAPFDIAFLRRHAKSSGVDWN-HMVLDTVLLSAVIFGASVPHTLDALCDRL 394


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 34/143 (23%)

Query: 6   IDIETRSPQP-----LPKVGVWAYA-------EQAVIT-----LCAYAWDDEPVKLWDRT 48
            D ET    P     + ++G            E          L + A     V++   T
Sbjct: 535 FDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPDRLISAA----SVQIHGIT 590

Query: 49  E----QSAMPSDLLQYL--RDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +          ++L       +  + VAHN+ F+       +   G+    +  + T +L
Sbjct: 591 QDRVIGQPRIGEVLPAFHAFAQDTVLVAHNAAFDMKFLQLKEAATGLAFH-QPVLDTLLL 649

Query: 100 ARTNGL---PSSLKNACLALNFS 119
           +           L+      N +
Sbjct: 650 SAVVHPNQESHRLEAIAERFNIT 672


>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
 gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
          Length = 287

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           F+D+ET    PL    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 75  FVDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 135 PSTHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 193 LSMRYSLSFLKELLGF 208


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 16/96 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GI 86
           D  PV +   T +          +   + + L     + VAHN+ F+           G+
Sbjct: 60  DPGPVHIHGLTPERLRGAPTFDRVAERVAELL--SGRVMVAHNAAFDYAFLAHEFGRAGL 117

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
            +P ++ +CT  L R  GLP     L          
Sbjct: 118 HLPVEQRLCTLALGRRIGLPTPDLRLSTLAAHYGVP 153


>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET               E   + L                       A A  
Sbjct: 1   MRQIILDTETTGLN---ARTGDRIIEIGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-----K 91
               +   D+ + + +   L  +++D     + HN+ F+      +   + +P       
Sbjct: 58  GLTTEFLSDKPKFAEIADTLRDFIQDAE--LIIHNAPFDIGFLDAEFALLGLPPFSQYCG 115

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             I T V A++   G  +SL   C     S
Sbjct: 116 EVIDTLVRAKSMFPGKRNSLDALCDRFGIS 145


>gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
 gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
          Length = 383

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D+   +    E         + + D +V+ V H +  +  +     G D
Sbjct: 37  PELCLIQMAGPDDEGIVDPLAEG-IDLKPFFELMADTSVVKVFHAARQDIEIMV-HRG-D 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G   S                    +   A   K S  +     
Sbjct: 94  LVPHPIFDTQVAAMVCGFGES------------ISYDQLVSRITGAHIDKSSRFTDWSRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             ++          Y   DV   R+++  L+     E     +   +
Sbjct: 142 PLSDKQLD------YALADVTHLRDVYLELLSRLKAEGRSHWVADEM 182


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 34/142 (23%)

Query: 4   LFIDIETR--SPQP--LPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD---------- 46
           +F+D+ET   S     + ++GV        I     +       P +             
Sbjct: 16  VFVDLETTGGSSADHRITEIGV------VEIGPLGVSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 47  --RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
                 +   + L   L +  +  + VAHN+ F+R   +      G+       +CT  L
Sbjct: 70  DAMVRDAPTFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLTFNPD-VLCTVRL 128

Query: 100 ARTN---GLPSSLKNACLALNF 118
           +R          L         
Sbjct: 129 SRALFPRESRHGLDALIERHGL 150


>gi|229472197|gb|ACQ72613.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472287|gb|ACQ72658.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472311|gb|ACQ72670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472417|gb|ACQ72723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFIPTPGQIMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P+         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDPVRG---DRLVELGCVEIFNRMPTGQTFHCYINPERDMPQEAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW 93
                 L D+   + +  + L+++ D     + HN+ F+        ++     I  +R 
Sbjct: 58  GLSSEFLADKPLFAQVVDEFLEFIGDA--PLIIHNASFDISFINAELERLKRQVIGRERL 115

Query: 94  ICTSVLARTNGLPSS--LKNACLALNFS 119
           + T ++AR      S  L + C      
Sbjct: 116 VDTLLIARRKHPGVSNRLDDLCSRYAID 143


>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
          Length = 287

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 20/134 (14%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDE-----PVKLWDRTEQ 50
           FID+ET    PL    +   A   +   I      L    +  D       +   D    
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYISDLTGIAYEDTLNA 134

Query: 51  SAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RTNG 104
            ++   L +  L     + VAHN+ F+     +     +  P     +CT  L+      
Sbjct: 135 PSVHEALQKLRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAILS 194

Query: 105 LPSSLKNACLALNF 118
           +  SL      L F
Sbjct: 195 MRYSLSFLKELLGF 208


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQS 51
           M  + ID ET            L  V      E+    I  C   +    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
                    +  ++  Y+  +  + +AHN+ F+  + +K      I  P   + CT V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 --RTNGLP-SSLKNACLALNFS 119
                 LP   L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
 gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
          Length = 1195

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 32/179 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E            +   +     L   +   E   L D     +    L Q   
Sbjct: 267 EIAIDLE---------HHSYRTYQGFTC-LMQISTRSED-FLIDTLLLRSHIHMLNQVFT 315

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           + +++ V H S  +    ++  G+ I       T   +R    PS   +    L      
Sbjct: 316 NPSIVKVLHGSDSDIKWLQRDFGVYI--VNMFDTGQASRILEYPS--ASLAFLL------ 365

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                      +F      +  Y        +  +   +Y + D      ++ RL    
Sbjct: 366 -----------KFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNEL 413


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
          Length = 1449

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 86/343 (25%), Gaps = 67/343 (19%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLW-------------- 45
            ID  T     L   G     E+           D  V                      
Sbjct: 421 SIDT-TYCVLDLETTGFSPVIEKITEIGI-MKIKDGKVIDKFSCFVNPKKPIPPRVVEVT 478

Query: 46  ----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT 96
               D    +     +   + D  +  + VAHN+ F+    K   + LG D     ++ T
Sbjct: 479 NITDDMVRDAETIEQVFPKMLDFIKDSVLVAHNAEFDIGFLKHNARVLGYDFD-FTYLDT 537

Query: 97  SVLARTNGL---PSSLKNACLALNFS-------------EHLTKMEEGKALIARFCKGSI 140
             LA+          L      L                         + L  R  +   
Sbjct: 538 LTLAQELFPDFKTYKLGRIAKNLGIKVEVAHRALDDVDTTVKIFNVMLEKLKERGAETLQ 597

Query: 141 DSPPYDCTRANHVQAWQLFGEYCK---RDVEATRELFKRL--IPLSDGERDLWLLDQTIN 195
           D   Y    A   + ++    Y            +   +L      D       + +++ 
Sbjct: 598 DVDVYGSDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHLDYFYKKPRILKSMY 657

Query: 196 DR-------GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ------TYALR 242
            +       G       + +   L+ +  ++++          I+             + 
Sbjct: 658 KKYSEGLILGSACSEGELYQAI-LLGKSDEQIEAIAQDYDYLEIQPLGNNDYLVRQEQVP 716

Query: 243 MYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
              +L      ++ ++E   K +++  ++  +  +  + R   
Sbjct: 717 NKEYLKKINKKIIALAEKFNKPVVATGDVHFMDPEDEIYRRIL 759


>gi|195397702|ref|XP_002057467.1| GJ18089 [Drosophila virilis]
 gi|194141121|gb|EDW57540.1| GJ18089 [Drosophila virilis]
          Length = 1150

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 80/295 (27%), Gaps = 37/295 (12%)

Query: 360  ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
                +RS + A  G KLV AD+   E  + + +       +  A        + +K+  +
Sbjct: 789  IGSELRSMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGS 848

Query: 420  PIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
             +  ++       R   KV+  A  Y  G +  +T+       L       K+   F   
Sbjct: 849  DMHSITAKVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFA-- 906

Query: 476  EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
                           +     +L     +  +    + +           E     +Q  
Sbjct: 907  -------------ATKGKRVYRLREEFHDEQEDRPYSSY-----------EAKRLALQRN 942

Query: 536  GSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593
              +     R +           R   I         + + +   +  +   S   +    
Sbjct: 943  RPVGEVFHRPSWHGGTESAMFNRLEEIATREQPETPFLNCRLSRALESHGESDQEQRFL- 1001

Query: 594  GGKLTENIVQAISRD---ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                   +VQ+ + D   ++   M+          L+ HDE+     D       
Sbjct: 1002 -PTRVNWVVQSGAVDFLHLMLVSMRWLLGTHARFCLSFHDELRYLVKDELAAKAA 1055


>gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin]
 gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
           Friedlin]
          Length = 742

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 33/180 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E              Y+ Q    L   +  +E   + D  +  +    L    
Sbjct: 252 REIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVF 300

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + +++ V H +  +    +K     +       T V  +T  +P SL            
Sbjct: 301 LNPSILKVLHGAREDIRWLQK--DFSLYVVNLFDTGVALQTLHMPYSLAF---------- 348

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                     +  FC+  ++             + +    Y ++D      +  RL  L 
Sbjct: 349 ---------AVDHFCQVKLNKKYQTADWRVRPLSAE-MVHYARQDTHFLLYVHDRLKALL 398


>gi|262212193|gb|ACY35713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 13/144 (9%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R   I + G+ +V ADLAGIE R+L+        +  + NG    +           
Sbjct: 3   HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 56

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
           DK+    R + K +  A  Y  G +            L   +   K     + + +A   
Sbjct: 57  DKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDG 112

Query: 482 HLW---MQDQYPEFAVKDKLIGTA 502
                    +  E      L G  
Sbjct: 113 LDKLLEAIKKASERGFIKALDGRK 136


>gi|229472441|gb|ACQ72735.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 13/144 (9%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    A+ G  +V ADLAGIE R+LA          A  +             +    
Sbjct: 11  EFRQLFTATPGLVMVGADLAGIELRMLAHY-------LARYDEGRYADILLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G              L +     K     + +  A    
Sbjct: 64  DKIGISRRQVKTVTYAFLYGAGDAKL---GRSYDPQLAEKEAKRKGKEIRQAYMDAVPGL 120

Query: 483 LW---MQDQYPEFAVKDKLIGTAC 503
                      E    +   G  C
Sbjct: 121 EKLVSAVKSKAECGYINLCDGRRC 144


>gi|1297340|gb|AAA98977.1| DNA polymerase gamma [Mus musculus]
          Length = 1238

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 87/339 (25%), Gaps = 33/339 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 819  LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPTGYVLVGADVDSQELWIA 877

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            A +                      K+  T +   +    +  R   K+      Y  G 
Sbjct: 878  AVLGDAHLAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVRIHREHAKIFNYGRIYGAGQ 937

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
               + +       L +     K+   +   +    + L    +          +     L
Sbjct: 938  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGE---------WLVKQLNL 988

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
                       +  L + +    +   +      A   A           +   I +  +
Sbjct: 989  PVDRTEDGWVSLQDL-RMIRREASRKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDT 1047

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN-- 620
             R          +   +                  +VQ+ + D   ++   MK   +   
Sbjct: 1048 PRTPVLGCCISRALEPSVVQGEFITSR-----VNWVVQSSAVDYLHLMLVAMKWLFEEFA 1102

Query: 621  -GYDIVLTVHDEIVSETPDTPYFSVG-------TLCSLM 651
                  +++HDE+     +   +           L   M
Sbjct: 1103 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1141


>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
          Length = 703

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 102/397 (25%), Gaps = 59/397 (14%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68
           ET     L     ++Y  Q    L   +   +   + D  +  A    +        ++ 
Sbjct: 232 ETEIAVDLEHHDFYSY--QGFTCLMQISTRTQD-FIVDCLKVRANMYLMAPVFLQPNIVK 288

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128
           V H +  +    +K  G+ I       TS+  +   +P SL                   
Sbjct: 289 VFHGAREDVRWLQKDFGLYI--VNLFDTSIALQNLHMPHSLAF----------------- 329

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI---------- 178
              +  FC+  ++               +    Y ++D      ++ RL           
Sbjct: 330 --AVDHFCQVKLNKKYQTADWRVRPIPAE-MVSYAQQDTHFLLYVYDRLKQLLLNCEARA 386

Query: 179 ---PLSDGERDLWLLDQTINDRGYRIDLDL---------VLKLQELIAQERKKLDEDIVK 226
               +         L          +D D+         +  L     Q  +++      
Sbjct: 387 SVGNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSPQLQVAREIFNWRDM 446

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
                  S      +   L + T +          + +   S ++   +  ++  L    
Sbjct: 447 AAREADDSPSAVMHISCVLSIATKLPT-----SANEVLKCCSPVSVAVRTNVMKLLQIVK 501

Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRT----GRWSGCVFQPQNLPRQERSEEILTQ 342
            AI   ++L +  + D + +       A R        +G +   +              
Sbjct: 502 DAIGSADSLKDGANGDVKPKPLPNVGVALRYMGVHRSMTGTLPSIEQ-RADPAFTVEDAH 560

Query: 343 TIQALNRGETIADPLGLASDCVRSCI--IASNGKKLV 377
            +              +A+   R     IA  G  +V
Sbjct: 561 VVVRTEPSAWFETMRNVAAILRRKPYYPIALPGHDVV 597


>gi|229472391|gb|ACQ72710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +     K     + +  A      
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTACE 504
                    E        G  C 
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCP 145


>gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5]
          Length = 293

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 51/192 (26%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTLEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 ++      K S  +       ++         EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRSKNVHIDKSSRFTDWSRRPLSDKQL------EYALADVTHLRDVYLSLSSQLD 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRTSWLREEM 180


>gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 38/160 (23%), Gaps = 50/160 (31%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYA--------EQAVITLCA 34
           M ++ +D ET    P                  L       Y         E   +    
Sbjct: 1   MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGIT 60

Query: 35  -YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--DIPSK 91
                DEPV          +     +Y+R      V HN+ F+        G+  D    
Sbjct: 61  NERVADEPVFA-------DIADAFWEYIR--GAELVIHNAAFDVGFIDHEFGLLHDKRGG 111

Query: 92  R----------WICTSVLARTNGLPS--SLKNACLALNFS 119
                       + T  +AR        +L   C      
Sbjct: 112 PRLGPVADYCSVLDTLAMARKLHPGQRNNLDALCKRYGID 151


>gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3]
 gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 42/192 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T                 A + L   A+D + + L D      + S+  
Sbjct: 26  LVLDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPIAVGNL-SEFW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  +  V H+   +  +F +         R   + + A   G    L         
Sbjct: 69  SLLTEPEITTVLHSCSEDLEVFAR--NGQCQPIRLFDSQIAASLCGFGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +               T        +    Y   DV    EL+ +LI
Sbjct: 118 ---------GYAKLVEQTLNIALDKGESRTDWMKRPLSKAQLTYAANDVYYLYELYPQLI 168

Query: 179 PLSDGERDLWLL 190
              +    L  +
Sbjct: 169 QKLEDTDRLDWV 180


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 50/198 (25%), Gaps = 40/198 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWD------------ 46
             + +DIET    P+    +   A   E   I       D+    +              
Sbjct: 369 RYVIVDIETTGLHPMFSEIIEIGAVAIENGQI------TDEFHSFVKPSEKLNAFTVQFT 422

Query: 47  ------RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSK---RWICT 96
                    Q ++   L +++   +    VAHN+ F+    +  +   +        I T
Sbjct: 423 KITDQMLANQPSIEEVLPKFMEFCKDTTLVAHNANFDYRFLRYWIEKSLKLNWEPAVIDT 482

Query: 97  SVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
             LA+        +L+                      +   K +              +
Sbjct: 483 LALAKKLVRLSSYNLEKLASHFKLGPFS------HHRASEDAKVTAKIFLELLKLLK-ER 535

Query: 155 AWQLFGEYCKRDVEATRE 172
               F E      E+T  
Sbjct: 536 KITTFKEIESLQKESTLR 553


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 43/153 (28%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP 54
           M  +  ID ET    P     +   A +  I L     +   V   DR +        +P
Sbjct: 1   MKPIAVIDFETTGLSP----AMGDRATEVAIVL----VEGGRV--VDRFQSLMNAGVRIP 50

Query: 55  SDL-----------------LQYLRDETV-----MCVAHNSLFERILFKKTL--GIDIPS 90
           + +                    + D          VAHN+ F+R  ++  L    +  S
Sbjct: 51  AFITSLTGITNAMVASAPDAATVMTDANRFVGNAPLVAHNASFDRKFWEAELSRAGERAS 110

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFSE 120
           + + CT +++R          L       +  +
Sbjct: 111 QPFACTMLVSRRLYPQAPSHKLGVLVDYHHLPK 143


>gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 401

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 32/195 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL- 61
            + +D E        +   +       + L   A D+      D        S LL  + 
Sbjct: 38  YIAVDTE------FMRENSYW----PDLCLVQVA-DEHEAAAIDPKAPGLDLSPLLDLMV 86

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +E V+ V H    +  +     G          T + A   G           + +   
Sbjct: 87  DNEDVLKVFHAGGQDLEIIYNLTGKT--PHPLFDTQIAAMALG-------LGEQIGYG-- 135

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L+  +    +D        A      +   +Y   DV    ++F +++   
Sbjct: 136 --------NLVDAWLGVQLDKGARFTDWARRPLD-KRQIDYAIGDVTYLIQIFPKMLEEL 186

Query: 182 DGERDLWLLDQTIND 196
                   LDQ +  
Sbjct: 187 RRTGRGDWLDQEMER 201


>gi|229472179|gb|ACQ72604.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +     K     + +  A      
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTACE 504
                    E        G  C 
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCP 145


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+R
Sbjct: 480 VDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSR 537

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 538 TINTEYGKHGLNFLAKKYGVE 558


>gi|317034839|ref|XP_001401279.2| DNA polymerase gamma [Aspergillus niger CBS 513.88]
          Length = 1135

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 68/295 (23%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 699 GSELKAMIKAPPGYSFVGADVDSQELWIAS-LVGDAQFQIHGGNAIGFMTLEGSKAAGTD 757

Query: 421 IDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   + +     R   KV      Y  G K   T+       + +               
Sbjct: 758 MHSRTAQILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSE--------------- 802

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                    Q+   +   + K   T   ++ +       G      +  E FA   +   
Sbjct: 803 ------RQTQEVATKLYKETKGTRTTRRILCEGPF-WRGGTESFVFNKLEEFAEQERPRT 855

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                 +              +                                      
Sbjct: 856 PTLGAGITEALMRRFINKGSFMTSR----------------------------------- 880

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 881 -INWAIQSSGVDYLHLLIVAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAA 934


>gi|300864534|ref|ZP_07109398.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337492|emb|CBN54546.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 880

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 27/126 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMPSDL 57
            ++ D E                    ++L     D          + D  ++  +  + 
Sbjct: 22  IIWADTE----------VADWQTPNPRLSLIQILADPNDLTGDFAYILDVLDKPELVENF 71

Query: 58  LQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT------SVLARTNGLPSSLK 110
           +  +  + T+  V HNS ++     + LG    +K   CT        L R       LK
Sbjct: 72  IDLIMANPTIEKVFHNSSYDL----RYLG-KTQAKNVTCTWKIAQKLSLERLQVPNRQLK 126

Query: 111 NACLAL 116
                L
Sbjct: 127 TLAAGL 132


>gi|322796178|gb|EFZ18754.1| hypothetical protein SINV_08354 [Solenopsis invicta]
          Length = 1253

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 98/335 (29%), Gaps = 37/335 (11%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P+   S  +  + ++      + A         +R  I A  G  +V AD+   E  + 
Sbjct: 856  IPQVVVSGTLTRRAVEPTWMTASNAHV-ERIGSELRCMIQAPPGYNIVGADVDSQELWIA 914

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            + I    +K    A           K+  T +  V+       R   KV+  A  Y  G 
Sbjct: 915  SVIGDAHYKRIHGATPFGWMTLIGTKSNGTDMHSVTAKAIGISRDHAKVINYARIYGAGQ 974

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            K  + +       +       KS   F   +  + + L   +   +         +    
Sbjct: 975  KFAERLLKQFNPSMTDAEAISKSRKMFALTKGKKIYRLKT-EFINDDLQNISYTSSQAYH 1033

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
            + K      Q + Q  + +    + +      I+       P L  R  +          
Sbjct: 1034 IAKLHGKGLQDIFQKSEWIDGSESAMFNRLEQIAGSEHPITPFLNARLSRALEITNTDDD 1093

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNGY 622
             + +                               +VQ+ + D   ++   M+   K+  
Sbjct: 1094 DKFL-------------------------PTKINWVVQSGAVDFLHLMLVSMRWLMKDNA 1128

Query: 623  DIVLTVHDEIVSETPDTPYFSVG---TLCSLMTKN 654
               L+ HDE+    P    ++      + +LMT+ 
Sbjct: 1129 RFCLSFHDEVRYLVPSRYKYNAALAMHVTNLMTRA 1163



 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----------RTNGLPSSLKNACLAL 116
           + V HN  ++R   K+   ++    R++ T  L           R+  L           
Sbjct: 357 IIVGHNVSYDRSRIKEQYWLNCTGTRFLDTMSLHVCVSGLNSYQRSLLLSKKANAEKEIW 416

Query: 117 NFSEHLTKMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +  L  + E   L                 T  +    + +   YC  D  AT  + +
Sbjct: 417 LPNTSLNSLVEVHKLYCGYEISKEGRDLFVKGTIEDIRDNFDMLMSYCASDTIATHNILR 476

Query: 176 RLIPLSDGERDLWLLDQTINDRG 198
            L PL        +    + + G
Sbjct: 477 NLFPLFQERFPHPVTLAGMLELG 499


>gi|229472467|gb|ACQ72748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +     K     + +  A      
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTACE 504
                    E        G  C 
Sbjct: 123 LVTAVKSKAESGYIQLCDGRRCP 145


>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
 gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
          Length = 1027

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 40/173 (23%), Gaps = 26/173 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQ 59
           +++ ID+E              Y     +   +  W D    + D            L  
Sbjct: 361 NEIAIDLE--------HHSYRTYQGIVCLMQLSTRWGDW---IIDTLSDDVRQHAELLNS 409

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA-CLALN 117
              +   + V H +  + +  ++ LG+ +       T         P   L        N
Sbjct: 410 SFTNPDKVKVLHGANHDVLWLQRDLGLYL--VNLFDTYHATNVLMFPSHGLNYLMARYCN 467

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           F            L     +       Y      H   +     Y     E  
Sbjct: 468 FDADKR-----YQLADWRIRPLPKEMLYYARSDTHTLLFI----YDNLRHELM 511


>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
 gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 24/108 (22%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L ID E     T                   + L   A  DE   +         P  
Sbjct: 20  RVLAIDTEFLRERTYF---------------PRLCLIQAATPDESAAIDPILIDDLSP-- 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           L + L DE++  V H    +  +      +         T + A   G
Sbjct: 63  LARLLTDESITKVFHACSQDLEVI--YDALHCVPGPIFDTQLAAAFLG 108


>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
 gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
          Length = 233

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 174


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 68  CVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
            VAHN+ F+     +    +G++  +   + T +L+          +L   C  L
Sbjct: 359 IVAHNAPFDMAFLHRHKTRMGVE-WTHPILDTVLLSAVLFGASQTHTLDALCDRL 412


>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
 gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
          Length = 390

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 78/303 (25%), Gaps = 49/303 (16%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + +D E     T                   + L   A  +    L D    +   +  
Sbjct: 30  FIAVDTEFHRESTFW---------------PKLCLIQAATLEFD-CLIDPLSPNIDLAPF 73

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
           L  + D + + V H +  +  +F K   I  P      + V A   GL  S         
Sbjct: 74  LDLMADTSRVKVFHAARQDMEIFTKL--IGTPPAPIFDSQVAAMACGLGDS--------- 122

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 +    + L AR  K S  +                   Y + DV   R  + +L
Sbjct: 123 ---VSYENLVSQLLKARVDKSSQFTDWQRRPLTEKQLD------YARGDVTHLRHCYVKL 173

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
               +    +  ++    +    ++ D      +   +        I K     +     
Sbjct: 174 KAKLEKLGRMGWIE---EETEILVNPDTYDTNPKNAWKRM-----KIRKPRKDYLALIAS 225

Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297
               R  L          + +      ++      +     L  +    +      TL E
Sbjct: 226 VSEWREKLAQELDKPRSRILKDDAVQEIAQQKPIDVNAMERLRAVPKGFAKSKHGQTLLE 285

Query: 298 AVS 300
           A++
Sbjct: 286 AIN 288


>gi|190892568|ref|YP_001979110.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
 gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
          Length = 196

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           M  + ID ET + Q      V  A+ E+  +T                   A     P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +  + +       +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 61  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RTNGLP---SSLKNACLALNFS 119
           +          L      L   
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGLR 140


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 32/243 (13%)

Query: 49  EQSAMPSDLLQYL--RDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART- 102
           +       +L       +  + VAHN+ F+    K   K L I +  +  I T  L++  
Sbjct: 541 QGQQTIDQVLPQFLAFAKDCVLVAHNASFDINFLKEKAKELKISLEPQPIIDTMALSQRY 600

Query: 103 ---NGLPSSLKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
                   SLK          E   +        A      ID            Q    
Sbjct: 601 FSNLLKYFSLKRLATFFKVKLEDHHRALADATATAEIFIKMIDQLADPTKDPKDEQVITF 660

Query: 159 FGEYCKRDVEATRELF-KRLIPLSDGERDLWLLDQTI----NDRGYRIDLDLVLKLQE-- 211
           F    K D +  R      L+    G R+L+ L         ++  R+    +  L++  
Sbjct: 661 FDLQEKIDPKYERPYHINILVANQTGYRNLFELLSNALTKDFNKSPRVLKSNLANLRQGL 720

Query: 212 --------------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                          + Q   KL + I       ++  +    L   L    G+ +++ +
Sbjct: 721 LVGSGCMNSNIFEIALNQNISKLKKAISFYDYIEVQPPQAYKHLIHDL-GKNGLQIIETT 779

Query: 258 EGT 260
             T
Sbjct: 780 LKT 782


>gi|327403214|ref|YP_004344052.1| 3'-5' exonuclease, PolB [Fluviicola taffensis DSM 16823]
 gi|327318722|gb|AEA43214.1| 3'-5' exonuclease, PolB [Fluviicola taffensis DSM 16823]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 60/237 (25%), Gaps = 68/237 (28%)

Query: 2   SKLFIDIET------RSPQPLPKVGV-----------------------WAYAEQAVITL 32
             LF+DIET       S   L    +                         YAE   I  
Sbjct: 9   KILFLDIETVPEVYNYSDLELETTKLFDSKNARYLTEEKTKEDVYNEKAGIYAEFGKIVC 68

Query: 33  CAYAW-----DDEPVKLWDRTEQ--SAMPSDLLQYLRD----ETVMCVAHNSL-FERILF 80
            +  +       + +++          +    ++ L +       +   HNS  F+    
Sbjct: 69  ISVGFVHQSATGKSIRMTSFAHDDEETLLRQFVRLLENNYNTPKHVLCGHNSKEFDLPFI 128

Query: 81  KKTL---GIDIP-------SKRWI----CTSVL-------ARTNGLPSSLKNACLALNFS 119
            + L   GI +P        K W      T  L       A T     SL   C      
Sbjct: 129 CRRLLINGIALPNILNLAGKKPWEILHLDTMELWKFGDYKAYT-----SLALLCHIFKIP 183

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                   G  +   + +             + V   QLF       +    E++ +
Sbjct: 184 T-PKDDISGADVARVYYEEQNLDRIRIYCEKDVVALIQLFLRMNGESLVDEGEIYIK 239


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-----------LCAYAWDDEPVKLWDRT 48
            +  D ET          +   A       +              +    +      D  
Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKVRGGELVDHYTSLIDPGVPISPKIQELTGITSDMV 475

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
           +     S++L+  R      + VAHN+ F+        + LG        + T  LAR  
Sbjct: 476 KGQPGLSEVLEAFRKFAAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDTLALARVL 535

Query: 104 ---GLPSSLKNACLALNFS 119
                   LK      N  
Sbjct: 536 YPRERNHRLKTLTQKFNVE 554


>gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 135

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 25/143 (17%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121
            +  + H + F+  + +  L  +  +    CT + +R         SLK  CL L     
Sbjct: 1   NITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL----- 53

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L  +  K    S   D    +          Y   DV     + ++L  + 
Sbjct: 54  ---------LDTKLNKQQQSSDWGDENLTDKQ------KSYAASDVLYLHRIKEKLDLML 98

Query: 182 DGERDLWLLDQTINDRGYRIDLD 204
           + E    L  +       RI+LD
Sbjct: 99  ERENRKELAQKCFEFLPTRIELD 121


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 40/149 (26%), Gaps = 34/149 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-----------EQAVI-----TLCAYAWDDEPVKL 44
           M ++ +D ET          V                   +            D E V +
Sbjct: 1   MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPDRGI----DAEAVAV 56

Query: 45  WDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG------IDIPSKR 92
              TE         + +++   D       V HN+ F+       LG      +D+    
Sbjct: 57  HGITEEFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAG 116

Query: 93  WICTSVLARTNGLP--SSLKNACLALNFS 119
            I T  +A+       +SL   C      
Sbjct: 117 VIDTLRMAKEQNPGKKASLDALCDRYEID 145


>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  + + CT 
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPFYCTM 130

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 165


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 48/148 (32%), Gaps = 44/148 (29%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQSAMP-------- 54
            D ET   +PL   G     E A I L    W+D     V       +  +P        
Sbjct: 7   FDTETTGLEPL---GGDRVIEVAAIEL----WNDLPTGKVFHTLIDPERDIPAEASRVHG 59

Query: 55  ----------------SDLLQYL-RDETVMCVAHNSLFERILF----KKTLGIDIPSKRW 93
                           ++LL++   D     VAHN+ F+         +     +   R 
Sbjct: 60  MTSADVAGKPKFAEIAAELLEFFAEDP---LVAHNAPFDFGFLDAEFARIGRAALDRARM 116

Query: 94  ICTSVLA--RTNGLPSSLKNACLALNFS 119
           I T  LA  R  G+P+SL   C   +  
Sbjct: 117 IDTLALAKQRFPGMPNSLDALCRRFDID 144


>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
          Length = 885

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L +  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTNPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
 gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 39  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 97

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 98  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 154

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 155 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 189


>gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 398

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A   +  +  D        + L + + D  V+ V H +  +  +F      D
Sbjct: 37  PQLCLVQVA-GPDEARAIDPLAPGMDLTPLFELMADTNVLKVFHAARQDVEIFLHLA--D 93

Query: 88  IPSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
                   T + A   G   S   +     L            KA I +  + +  S   
Sbjct: 94  AIPTPIFDTQIAAMVCGFGDSVGYETLASQLA-----------KARIDKSMRFTDWSIRP 142

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI----NDRGYRI 201
              +           +Y   DV   R  +++L+   +    +  L + +        YR+
Sbjct: 143 LSEKQ---------IQYALADVTHLRVAYEKLVRKLERNGRIEWLSEEMALLTEPGTYRV 193

Query: 202 DLDLVLKLQE 211
           D +   +  +
Sbjct: 194 DPENAWRRLK 203


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITGITDEMV 135

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 KGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 182


>gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42]
 gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium
           etli CFN 42]
          Length = 196

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           M  + ID ET + Q      V  A+ E+  +T                   A     P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +  + +       +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 61  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RTNGLP---SSLKNACLALNFS 119
           +          L      L   
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGLR 140


>gi|147904034|ref|NP_001081464.1| DNA polymerase subunit gamma-1 [Xenopus laevis]
 gi|2494179|sp|Q91684|DPOG1_XENLA RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1229142|gb|AAB17117.1| DNA polymerase gamma [Xenopus laevis]
          Length = 1200

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 78/312 (25%), Gaps = 35/312 (11%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVLA-----WIAGEDWKIKAFANGEDIYVTT 412
                  +++ +    G  L+ AD+   E  + A       AG                ++
Sbjct: 838  DRVGSELKAMVQVPPGYHLIGADVDSQELWIAAILGEAHFAGIHGCTAFGWMTLQGKKSS 897

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                 +     V    R   KV      Y  G    + +       L Q     K+   +
Sbjct: 898  GTDLHSKTASTV-GISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQEQAAEKAKQMY 956

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +    + L    +      +  +     E            +  L K   +      
Sbjct: 957  AVTKGIRRYILS--KEGEWLVEELGISVERGEENSV-------NLQDLRKIQKDATKRSR 1007

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
            ++   +S  R         +   +   I +  S +      +   +   TA         
Sbjct: 1008 RKWNLVS--RRIWTGGTESQMFNKLETIAMSPSPKTPVLGCRISRALEPTAVKGEFITSR 1065

Query: 593  YGGKLTENIVQAISRD---ILCEGMK---NATKNGYDIVLTVHDEIVSETPDTPYFSVG- 645
                    +VQ+ + D   ++   MK    A        +++HDE+         +    
Sbjct: 1066 -----VNWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVHSKDRYRAAL 1120

Query: 646  ------TLCSLM 651
                   L   M
Sbjct: 1121 ALQITNLLTRCM 1132


>gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 204

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 40/192 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA-----VITL--CAYAWDD-----EPVKLWDRT 48
           M  LF D ET   +P     +                    +  D+     E +  +   
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 49  EQSAMPSDLLQYLRD----------ETVMCVAHNSLFERILFKKT---LGIDIPSKRWIC 95
           +   +   +  Y  D          E    + HN  F+    K     LG         C
Sbjct: 61  KLYELSEGM--YFEDLYANFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 96  TSVLARTNGLPSSLKNACLAL----NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           T             K+ C  L    ++     +       I         +  +  +   
Sbjct: 119 TM--KYY-------KDICKILRPTGDYKNPKLEEVIKHLNITDSEISKTANKYFQGSGNY 169

Query: 152 HVQAWQLFGEYC 163
           H   +     Y 
Sbjct: 170 HDARFDTAATYL 181


>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
 gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
          Length = 234

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P          E   + L                       A A  
Sbjct: 1   MRQIVLDTETTGLNP---RSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP-----SK 91
               +   D+ + + +  +   Y+       V HN+ F+      +   +++P       
Sbjct: 58  GLTTEFLSDKPKFAEIVDEFRDYI--SGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVG 115

Query: 92  RWICTSVLARTNGLPS--SLKNACLALNFS 119
             + T   A+        SL   C     S
Sbjct: 116 GILDTLQQAKELHPGKRNSLDALCDRYGVS 145


>gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 240

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 42/153 (27%), Gaps = 44/153 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLC------------------------- 33
           M ++ +D ET         G+ AY       I                            
Sbjct: 1   MREIVLDTETT--------GLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPERDMPVE 52

Query: 34  AYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDI 88
           A+       +   D+ +   +  + L ++ ++    V HN+ F+        ++     I
Sbjct: 53  AFNVHGLSAEFLSDKPKFKDVADEFLNFIAED--TLVIHNAAFDIGFLNAELERLGRPTI 110

Query: 89  PSKRWICTSVLARTNGLPSS--LKNACLALNFS 119
              R + T  LAR         L +        
Sbjct: 111 ARDRVVDTLALARRKHPGGGNRLDDLMNRYGID 143


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 17/134 (12%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E S + +D  ++  D   + VAHN+ F+        +  G+   S   I T  LAR 
Sbjct: 482 DAPEVSEVVTDFKKWAEDG--ILVAHNASFDMGFLNISYQRAGLKKASNPVIDTLELARF 539

Query: 103 NGLP---SSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                    L      L      +          G  L     +       Y     +++
Sbjct: 540 LYPSMKNHRLNTLAKKLDVELTQHHRAIYDAEATGYILAKLLKETYEKEIKYHDQLNDYM 599

Query: 154 ---QAWQLFGEYCK 164
               +++    Y  
Sbjct: 600 GEGDSYKRARPYHC 613


>gi|119511988|ref|ZP_01631084.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
 gi|119463339|gb|EAW44280.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
          Length = 871

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 25/128 (19%)

Query: 2   SKLFIDIE----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             L++D E    T     L  + V A    +     +         L D  ++  +    
Sbjct: 21  KTLWLDTEIADFTTHYPRLSLIQVLADPTDST--GVS-------AYLLDVLDKPDLAEYF 71

Query: 58  L-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA------RTNGLPSSLK 110
           + Q + +  +  V HN+ F+     K LG  +  +   CT  +A      R       LK
Sbjct: 72  INQIMINPNIEKVFHNAGFDL----KYLGKKLA-QNITCTYQIARKITRDRLKVSNLKLK 126

Query: 111 NACLALNF 118
                L  
Sbjct: 127 TLAAELCH 134


>gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
 gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
          Length = 363

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 26/183 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D  E   M   L   LRD++V+ V H    +  +F+   G  
Sbjct: 27  PRLGLIQL-FDGEQLSLIDPIEVEDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG-- 82

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T ++A   G   S                   G   + +   G         
Sbjct: 83  CLPTPMFDTQLMAAFLGHGIS------------------TGFGALVKEYVGVELDKGEAR 124

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----ERDLWLLDQTINDRGYRIDL 203
           T            +Y   DV   + LF+ L+   +     E         +  R   +D 
Sbjct: 125 TNWLARPLTAKQLDYAAADVYYLKPLFETLLAKVEKRGYMEALQQECQSVMQRRIKPVDP 184

Query: 204 DLV 206
           +  
Sbjct: 185 EKA 187


>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 26  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 84

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 85  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 141

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 142 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 176


>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
          Length = 860

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L +  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTNPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|262212057|gb|ACY35645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212063|gb|ACY35648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212099|gb|ACY35666.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212105|gb|ACY35669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999]
          Length = 382

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 61/217 (28%), Gaps = 46/217 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T  P     +G+    +   I L       +P+ + D +        L 
Sbjct: 27  IAVDTEFVRTRTFYP----HIGLVQIYDGVDIALI------DPIAIDDLSP-------LS 69

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q + +  V+ V H    +   F+  LG  +  +    T V A+  GL +S          
Sbjct: 70  QLMTNPQVIKVLHACSEDLETFEFALG--VMPEPLFDTQVAAQLAGLGNS---------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G   +    +          T             Y   DV      + +L 
Sbjct: 118 --------VGYGRLVELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLA 169

Query: 179 PLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQE 211
              +           ++Q I  +   ID      L +
Sbjct: 170 EKLEASQQLHWVYDEVNQLIRRKRANIDPKHAYLLLK 206


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 34/150 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ +D ET    P  K G     E     +       +   V +           ++ 
Sbjct: 1   MRQIVLDTETTGIDP--KEG-HRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVH 57

Query: 59  ----QYLRDE-----------TVMC----VAHNSLFERILFKKTLGIDIPSKRWI----- 94
               ++L D+             +     V HN+ F+        G++  +K  I     
Sbjct: 58  GITNEFLTDKPTFAQVAQEFVNFIKGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQIC 117

Query: 95  ---CTSVLARTNGLPS--SLKNACLALNFS 119
               T  LAR        +L   C      
Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGID 147


>gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062]
 gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A + +   L D   +          +R+  ++ V H +  +  +    LG  
Sbjct: 37  PKLCVIQIA-NPDHAVLVDALAEDLDLEPFFALMRNTDIVKVFHAARQDIEII-YHLGGF 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       + V A   G   S                    K    R  K S  +     
Sbjct: 95  V-PSPLFDSQVAAMVCGFGDS------------VSYDQLVSKVTGERIDKSSRFTDWSRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              N   A      Y   DV   RE++  L    + +     ++  +
Sbjct: 142 PLTNKQLA------YALADVTHLREVYLFLKKQLEQKGRSHWVEDEM 182


>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14]
 gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 26/183 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D  E   M   L   LRD++V+ V H    +  +F+   G  
Sbjct: 39  PRLGLIQL-FDGEQLSLIDPLEVEDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T ++A   G   S                   G   + +   G         
Sbjct: 95  CLPTPMFDTQLMAAFLGHGIS------------------TGFGTLVKEYVGVELDKGEAR 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----ERDLWLLDQTINDRGYRIDL 203
           T        +   +Y   DV   + LF+ L+   +     E      +  ++ R   +D 
Sbjct: 137 TNWLARPLTEKQLDYAAADVYYLKPLFESLLAKVEERGYMEALQQECESVMHRRIKPVDP 196

Query: 204 DLV 206
           +  
Sbjct: 197 EKA 199


>gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
 gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
          Length = 209

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     +   I   AY+        +DDE +++     +  +
Sbjct: 4   FVALDFETANKFKNSACSLAVITVKDGQIIKKAYSLIKPPFMSFDDECIEIHGIQPKDVI 63

Query: 54  PSDLLQYLRD---ETVMC----VAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L +   E  +     VAHN+ F+  + +       I  P   + CT  L+R  
Sbjct: 64  HEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPDLDYACTVKLSRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 124 WPDLVNHKLNTMAAYIGVE 142


>gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus]
          Length = 728

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 35/161 (21%)

Query: 56  DLLQYLR------DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN--- 103
           +L + L+      +  +   AHN+ F+    K   +   I+ P+   I T +++R     
Sbjct: 492 ELKEALQKIYNDLNGKIAL-AHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQ 550

Query: 104 GLPSSLKNACLALNFSEHL-------------------TKMEEGKALIARFCKGSIDSPP 144
                L++    +                            E GK  I  F + +     
Sbjct: 551 NKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQLNSYIKD 610

Query: 145 YDCTRANHVQAWQLFGEYCKRDVE---ATRELFKRLIPLSD 182
               +    +   +   Y     +    T  L K L     
Sbjct: 611 DLYNKTFSYEVSTIAKNYEGLKEQYGYLTTALTKNLYNGPK 651


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 35/161 (21%)

Query: 56  DLLQYLR------DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN--- 103
           +L + L+      +  +   AHN+ F+    K   +   I+ P+   I T +++R     
Sbjct: 492 ELKEALQKIYNDLNGKIAL-AHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQ 550

Query: 104 GLPSSLKNACLALNFSEHL-------------------TKMEEGKALIARFCKGSIDSPP 144
                L++    +                            E GK  I  F + +     
Sbjct: 551 NKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQLNSYIKD 610

Query: 145 YDCTRANHVQAWQLFGEYCKRDVE---ATRELFKRLIPLSD 182
               +    +   +   Y     +    T  L K L     
Sbjct: 611 DLYNKTFSYEVSTIAKNYEGLKEQYGYLTTALTKNLYNGPK 651


>gi|262212095|gb|ACY35664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
                 R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PNDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
 gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
          Length = 378

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 40/191 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYL 61
           + +D E      +     +  A    I        D                P  L + L
Sbjct: 29  IAVDTE-----FMRTDTFYPIAGLLQI-------GDGKGCYLIDPLAIADWQP--LRELL 74

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+ V H+   +  +F++ L  D+       T + A    L   L       N    
Sbjct: 75  LDGKVIKVLHSCSEDLEVFQRWL--DLVPSPLFDTQIGAAFANLGFGLG----YANL--- 125

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIP 179
             K   G               P D TR++ +Q    Q   +Y   DV     ++ +L+ 
Sbjct: 126 -VKTLLG------------IEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQ 172

Query: 180 LSDGERDLWLL 190
           +    + L  +
Sbjct: 173 ILKTSQRLEWV 183


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRT-------EQSAM 53
           +F+D+ET                   I     +       P +                +
Sbjct: 16  VFVDLETTGGSSAEHRITEIGV--VEIGPLGVSTWTTLVNPGQAIPPFIQQLTGISDEMV 73

Query: 54  PSD-----LLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
                   L   L +  +  + VAHN+ F+R   +      GI       +CT  L+R  
Sbjct: 74  RDAPSFASLAPALVERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPREARHGLDALIERHGL 150


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 25/145 (17%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRTEQS 51
           M  + ID+ET    P     + ++G+ A  E   I    A  ++ E   P+ +   T   
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGM-AVVEDGSIVKRFASFFNPEQPIPLFIQQLTNID 61

Query: 52  AMPSDLLQYLRDETVMC---------VAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
               +      D+             VAHN  F+    +  L   G    +   I T  L
Sbjct: 62  EQTVEGAPLFADKADEITAMMEGAYFVAHNVDFDLPFLQAELERAGWPPFTGPTIDTVEL 121

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           AR          L +    L     
Sbjct: 122 ARIVLPTAESYKLGDLAKQLGLHHD 146


>gi|149410714|ref|XP_001508312.1| PREDICTED: similar to Werner syndrome [Ornithorhynchus anatinus]
          Length = 1813

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 45/248 (18%)

Query: 4   LFIDIE---TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  DIE   T S   L             + L      D+   L+  +  S  P  L   
Sbjct: 465 IGFDIEWPPTYSKGKL-----------GRVALIQLCVSDQKCYLFHISSMSGFPKGLKML 513

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L +E +                  G+ I   +W    +L+        LK+     + + 
Sbjct: 514 LENEAIRK---------------AGVGIEGDQWK---LLS---DFEIKLKSFVELADVAN 552

Query: 121 HLTKMEEGKALIA----RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              K +E  +L +     F K  +      C+  +     +    Y   D  A   ++++
Sbjct: 553 EKLKCKEKWSLNSLVKHLFNKQLLKDKAIRCSSWDEFPLTEDQKLYAATDAYAGFIIYQK 612

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L  L   E+ L+ +      +   +    + +    +++E   L   +           R
Sbjct: 613 LATLGCAEQILFNV------KREEMLPRDLKEQLTSMSEEIIDLANHLPVTFQKPECPQR 666

Query: 237 QTYALRMY 244
            +  ++  
Sbjct: 667 ISKLMKDI 674


>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
 gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
          Length = 385

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 44/167 (26%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  +    +        + +     + DE V+ V H +  +  +    LG D
Sbjct: 37  PELCLIQMASPNHTALVDALAPGLDL-APFFSLMADEKVVKVFHAARQDIEIVF-HLG-D 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       + V A   G                        K       K S  +     
Sbjct: 94  LIPSPVFDSQVAAMVCGFG------------DAISYDQLVQKVTGKHIDKSSRFTDWRRR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             +           Y   DV   R+++  L    + E     +++ +
Sbjct: 142 PLSEKQLD------YALADVTYLRDIYLYLKQELEKEGRSEWVNEEM 182


>gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus]
          Length = 727

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 351 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 408

Query: 116 L 116
            
Sbjct: 409 Y 409


>gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
 gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 245

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 46/166 (27%), Gaps = 57/166 (34%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------DEPVKLWDRTEQSAMP 54
           M ++ +D ET         G   ++    I     A +                 Q +MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPQRSMP 50

Query: 55  SDLLQY--------------------LRDETV-MCVA--------------HNSLFERIL 79
            D  +                     LRD+ V   V               HN+ F+   
Sbjct: 51  QDAFKVHGIGPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFVRDSKMVIHNAAFDMKF 110

Query: 80  FKKTLGI----DIPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
               L       +P  + + T  +A  R  G P++L   C   N  
Sbjct: 111 LNAELDWMGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNID 156


>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
 gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
          Length = 304

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 28/118 (23%)

Query: 4   LFIDIETR----SPQPLPKVGVWAY---AEQAVITLCAYAWDDEPVKLWDRTEQSA---- 52
           L ID ET     S   + ++G+ A+   A    I+      D                  
Sbjct: 48  LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRI---VDTYSGFEDPCRPLDPEVTA 104

Query: 53  ---MPSDLL--QYLRDETVMCV--------AHNSLFERILFKKTLGIDIPSKRWICTS 97
              +  D+L  Q L D  V  +         HN  F+R   ++    +     + CT 
Sbjct: 105 VTGITDDMLAGQSLDDAAVGKIVSQASLCFCHNCKFDRSFLERRFP-EFEKLPFACTM 161


>gi|226294174|gb|EEH49594.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb18]
          Length = 1183

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 80/269 (29%), Gaps = 13/269 (4%)

Query: 317 TGRWSGCVFQPQN---LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
           TGR S      +    LP+      I  + ++      + A         +++ + A  G
Sbjct: 694 TGR-SLSDPSLKQGFILPQVIPMGTITRRAVENTWLTASNAKA-NRVGSELKAMVRAPPG 751

Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQR 429
              V AD+   E  + + + G+        N          KA  T +   +       R
Sbjct: 752 YVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISR 810

Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489
              KV      Y  G K   T+       + +      ++  +++ + A ++   + D+ 
Sbjct: 811 NDAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGARTNRKQLSDRP 870

Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549
                 +  +    E   +  R        L   +TE         GS    R+    + 
Sbjct: 871 FWRGGTESFVFNKLEEFAEQER---PRTPVLGAGITEALMRRFINKGSFMTSRINWAIQS 927

Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
               +   + I +    R    D +   +
Sbjct: 928 SGVDYLHLLIISMDFLIRRFNLDARLAIT 956


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 329 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 386

Query: 116 L 116
            
Sbjct: 387 Y 387


>gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 209

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     +   IT  AY+        +DDE +++     +  +
Sbjct: 4   FVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDVL 63

Query: 54  PSDLLQYLRD---ETVMC----VAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L +   E  +     VAHN+ F+  + +       I  P   + CT  L+R  
Sbjct: 64  HEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 124 WPDLVNHKLNTMAAYMGVE 142


>gi|289617399|emb|CBI55887.1| unnamed protein product [Sordaria macrospora]
          Length = 1509

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/382 (12%), Positives = 89/382 (23%), Gaps = 89/382 (23%)

Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT---GRWSGCVFQPQNLPRQ 333
            I  R       ++  + L                  A++        G    PQ +P  
Sbjct: 651 WISARERIKNQMVVYEDKLP------------PSQRFATKGADDDTPVGGFILPQLIPMG 698

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
             +   + +T                    +++ + A  G   V AD+   E  + + + 
Sbjct: 699 TITRRAVERT-----WLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSEELWIAS-VV 752

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFK 449
           G+        N          K+  T +   +       R   KV      Y  G K   
Sbjct: 753 GDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAAILGITRNDAKVFNYGRIYGAGLKFAS 812

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
            +       L +      +T  ++  + A+                           +  
Sbjct: 813 QLLRQFNPSLTEAETITIATKLYDATKGAK-------------------TNRKSLYKRPF 853

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
           WR    G      ++ E FA   +    +    +              +           
Sbjct: 854 WRG---GTESFVFNMLEEFAEQERPRTPVLGAGITEALMSRWVSKGGFLTSR-------- 902

Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKN---GYD 623
                                           +Q+   D   +L   M   T+       
Sbjct: 903 ----------------------------INWAIQSSGVDYLHLLIIAMDYLTRRFNLACR 934

Query: 624 IVLTVHDEIVSETPDTPYFSVG 645
           + +TVHDEI     +   + V 
Sbjct: 935 LTITVHDEIRYLAEEHDKYRVA 956


>gi|262212183|gb|ACY35708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKAVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 26/141 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLW----------- 45
            +  DIET         + ++      E   I   A   +                    
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDRYATFVNPHERIPYHIQQLTNINDDMV 480

Query: 46  -DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLAR 101
            D  +   +    +++  D   + VAHN+ F+        K LG+ I     + T  LAR
Sbjct: 481 KDAPDVEPVLKRFVEFAEDA--ILVAHNARFDYDFVNAKLKELGLPIMENPVLDTLELAR 538

Query: 102 TNGLP---SSLKNACLALNFS 119
                     L         S
Sbjct: 539 MLFPTMKNHRLNTLAAKYKVS 559


>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
 gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 63/240 (26%), Gaps = 33/240 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           +++ +D+E            +   +         +       +     +  +   L   +
Sbjct: 55  NEMAVDLE---------HHSYRSFQGFTCV-IQVSTRRMDFVVDALELRGLIRDALGPVM 104

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  VM V H +  +    ++  GI +       T   AR   LPS  K     L+    
Sbjct: 105 ADPRVMKVFHGADMDVQWLQRDFGIYV--VGMFDTGQAARVLELPS--KGLAYLLDHYC- 159

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-------------- 167
             K ++   L     +   +          H   +       + D               
Sbjct: 160 SVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGDGSKPFRDLI 219

Query: 168 ----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               + +R++   L          +  D   N     +DL  +     L     ++   +
Sbjct: 220 RTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAGDLDLPRLAVYAALHGWRDERCRAE 279


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 25/145 (17%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRTEQS 51
           M  + ID+ET    P     + ++G+ A  E   I    A  ++ E   P+ +   T   
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGM-AVVEDGSIVKRFASFFNPEQPIPLFIQQLTNID 61

Query: 52  AMPSDLLQYLRDETVMC---------VAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
               +      D+             VAHN  F+    +  L   G    +   I T  L
Sbjct: 62  EQTVEGAPLFADKADEITAMMEGAYFVAHNVDFDLPFLQAELERAGWPPFTGPTIDTVEL 121

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           AR          L +    L     
Sbjct: 122 ARIVLPTAESYKLGDLAKQLGLHHD 146


>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
 gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
 gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
 gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
          Length = 233

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 174


>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
          Length = 886

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115
           L + L + T++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 349 LNESLTNPTIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLGRHSLDHLLKL 406

Query: 116 L 116
            
Sbjct: 407 Y 407


>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
 gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 43/154 (27%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYA-------EQA-VITLCA 34
           M ++ +D ET    P                  L    +  Y          A  I    
Sbjct: 5   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGIT 64

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID------- 87
            ++      L D+     + ++L+ +L  +    + HN+ F+       L +        
Sbjct: 65  DSF------LIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTL 116

Query: 88  IPSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
               + + T  +AR    G  ++L   C   +  
Sbjct: 117 THYCQVLDTLTIARQKHPGQHNNLDALCRRYHVD 150


>gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera]
 gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 24/192 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L + G         I   A+    + + L D  +   M        L 
Sbjct: 58  IGFDCE---GVDLCRHGTLC------IMQIAF---PDAIYLVDAIQGGEMLMKACKPALE 105

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL----NF 118
              +  V H+   +        GI +     + T +           K            
Sbjct: 106 SSYITKVIHDCKRDSEALYFQFGIKLH--NVVDTQIAYSLIEEQEGRKRLVDDYISFVGL 163

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G + + +  +   D    +     H     L       DV     ++ +++
Sbjct: 164 LADPR--YCGVSYLEK--QEVRDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYIYHKMM 219

Query: 179 PLSDGERDLWLL 190
                ER LW L
Sbjct: 220 EKL-NERSLWYL 230


>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
 gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
          Length = 234

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWAYAEQAV---------ITLCA 34
           M ++  D ET    P                 +     +                +   +
Sbjct: 1   MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPERDMPSAAEAVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
            ++ +   +       S    +LL++L D     VAHN+ F+        ++     I  
Sbjct: 61  ISFLETKPRF------SETADELLEFLGDA--PLVAHNAGFDFGFLNAELERIGRESIAM 112

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
            R + T  +AR    G   SL   C      
Sbjct: 113 DRMVDTVAIARKKHPGAKLSLDALCTRYGID 143


>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
 gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
          Length = 386

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 44/188 (23%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A    DD+   L D  + + M 
Sbjct: 22  YVTLDTEFLRERTYYS---------------KLCLLQMAVPGADDDTAVLVDPIDGAEMS 66

Query: 55  SD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
            + L +  RD +V+ V H +  +  +F   +   +       T V A   G         
Sbjct: 67  MEPLYELFRDTSVVKVFHAARQDLEIF--HVDAGVIPDPLFDTQVAAMVCGF-------G 117

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             + +            L+ R  K ++D        +      +    Y   DV   R +
Sbjct: 118 EQVGYET----------LVKRIAKQTVDKSSRFTDWSRRPLT-EAQKVYALADVTHLRVI 166

Query: 174 FKRLIPLS 181
           ++ L    
Sbjct: 167 YEYLAKKL 174


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 22/116 (18%)

Query: 1   MSKLFIDIET-----RSPQPL----PKVGVWAYAEQAVITLCAYAWDDEPVKLW-----D 46
           M  + ID ET      SP  +     + G     E   I      +    + +      D
Sbjct: 1   MPVVAIDFETANEQRSSPCAIGLAWIENGRITEVEHHYIRPIDMRFSGWNIAVHGIRPAD 60

Query: 47  RTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICT 96
             +  A P  L +    +   TV  +AHN+ F+  + ++     G+  P   +ICT
Sbjct: 61  VEDADAFPDVLGRLQARIERATV--IAHNAAFDISVMRRTCELYGLPFPCFDYICT 114


>gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
 gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 16/151 (10%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D TE   M +  +Q L+D +V+ V H    +  +F  + G  
Sbjct: 39  PQLGLIQL-FDGEHLSLIDPTELEDMTA-FVQLLQDTSVLKVLHACGEDLEVFHNSFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++            +   D   
Sbjct: 95  CLPYPMVDTQLMAAFLGHGLSTGFAALVDHYLQVELDKSESRT-----DWLARPLTD--- 146

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                      + L+  Y K     T   + 
Sbjct: 147 -KQLDYAAADVFYLWPLYEKLLAAVTEAGWW 176


>gi|262342237|gb|ACY54629.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 8   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 61

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 62  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 120

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 121 LDKLLEAIKKASERGFIKALDGRK 144


>gi|262212097|gb|ACY35665.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212109|gb|ACY35671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212119|gb|ACY35676.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212129|gb|ACY35681.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 35/161 (21%)

Query: 56  DLLQYLR------DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN--- 103
           +L + L+      +  +   AHN+ F+    K   +   I+ P+   I T +++R     
Sbjct: 498 ELKEALQKIYNDLNGKIAL-AHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQ 556

Query: 104 GLPSSLKNACLALNFSEHL-------------------TKMEEGKALIARFCKGSIDSPP 144
                L++    +                            E GK  I  F + +     
Sbjct: 557 NKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQLNSYIKD 616

Query: 145 YDCTRANHVQAWQLFGEYCKRDVE---ATRELFKRLIPLSD 182
               +    +   +   Y     +    T  L K L     
Sbjct: 617 DLYNKTFSYEVSTIAKNYEGLKEQYGYLTTALTKNLYNGPK 657


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|156542538|ref|XP_001599044.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1138

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           +++ +D+E  S +    +            L   +  D    L D     +    L +  
Sbjct: 652 NEIAVDLEHHSYRSFQGIT----------CLMQISTKDTD-YLIDTLTLRSELHVLNEIF 700

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACL 114
              +++ V H +  + +  ++ LG+ I       T   A+  GLP  SL     
Sbjct: 701 TKPSILKVFHGADSDILWLQRDLGLYI--VNMFDTYQAAKQLGLPFLSLSYLLK 752


>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
 gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
          Length = 232

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 43/154 (27%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYA-------EQA-VITLCA 34
           M ++ +D ET    P                  L    +  Y          A  I    
Sbjct: 1   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGIT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID------- 87
            ++      L D+     + ++L+ +L  +    + HN+ F+       L +        
Sbjct: 61  DSF------LIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTL 112

Query: 88  IPSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
               + + T  +AR    G  ++L   C   +  
Sbjct: 113 THYCQVLDTLTIARQKHPGQHNNLDALCRRYHVD 146


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVIT-----------LCAYAWDD----EPVK 43
            +  DIET         + ++G     +   I               +  ++        
Sbjct: 456 FIVFDIETTGFSAKNDAITEIGAVKVVK-GEIVDRFSTFVNPRRPIPFKIEELTHISDAM 514

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLAR 101
           + +      +    L +  D   + VAHN+ F+    +     I+       I T  +AR
Sbjct: 515 VMNAPFIEDILPKFLDFCED--YIIVAHNAGFDTGFIRENAKKINKEYNPSIIDTVAMAR 572

Query: 102 TNGLPSS---LKNACLALNFS 119
                 +   L   C ALN S
Sbjct: 573 LLLPELNRFKLDTVCKALNIS 593


>gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 40/154 (25%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGV-------------WAYA--------EQAVITLCA 34
           M ++ +D ET   +P     + ++G                Y         E   +    
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPERSMPNEAFEVHGLG 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
              DD    L D+   + +  D L+++ D     V HN+ F+       L       +P 
Sbjct: 61  ---DD---FLRDKPLFAQIVDDFLEFIGDA--KLVIHNAAFDVKFLNAELRWSKRPQLPR 112

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
              I T  +AR    G P+SL   C         
Sbjct: 113 DCAIDTLEIARRKFPGSPASLDALCRRFGIDNSS 146


>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
          Length = 916

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 355 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 412

Query: 116 L 116
            
Sbjct: 413 Y 413


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINIGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
 gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
 gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
          Length = 204

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 31/122 (25%), Gaps = 27/122 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA-----VITL--CAYAWDD-----EPVKLWDRT 48
           M  LF D ET   +P     +                    +  D+     E +  +   
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 49  EQSAMPSDLLQYLRD----------ETVMCVAHNSLFERILFKKT---LGIDIPSKRWIC 95
           +   +   +  Y  D          E    + HN  F+    K     LG         C
Sbjct: 61  KLYELSEGM--YFEDLYADFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 96  TS 97
           T 
Sbjct: 119 TM 120


>gi|298705698|emb|CBJ28936.1| hypothetical protein Esi_0124_0050 [Ectocarpus siliculosus]
          Length = 955

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 14/93 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------AMPS 55
           + L +D E      L        +          +  D     +     +        P 
Sbjct: 421 NVLGLDCE--WEPSLGGTTPNPVST------VQLSLPDGTAYCFQLQRGNKKTTSSNFPK 472

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            L   L + ++  V  N   +    ++  GI++
Sbjct: 473 ALQNLLENPSIAKVGVNINSDATYLERDYGIEV 505


>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----------------LPKVGVWAYAEQAV---------ITLCA 34
           M ++  D ET    P                 +P    +                I   +
Sbjct: 8   MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPERDMPAEAEAIHGLS 67

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
             +  +  +  D         + L ++RD+  M VAHN+ F+       L +     I  
Sbjct: 68  AQFLADKPRFAD------AVDEFLDFVRDD--MLVAHNAGFDFAFLNAELELCTREPICL 119

Query: 91  KRWICTSVLARTNGLP--SSLKNACLALNFS 119
            R I T  +AR        SL   C      
Sbjct: 120 TRKIDTLEMARRKNPGGKHSLDALCSRYGVD 150


>gi|262212173|gb|ACY35703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPS 107
            +  D L ++ D     V HN+ F+       LG      I   R + T ++AR     +
Sbjct: 67  QVAQDFLDFIGDAN--LVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIARRRFPGA 124

Query: 108 --SLKNACLALNFSEHL 122
             SL   C         
Sbjct: 125 QNSLDALCRRFGIDNSK 141


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 34/142 (23%)

Query: 4   LFIDIETR--SPQP--LPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD---------- 46
           +F+D+ET   S     + ++GV        I     +       P +             
Sbjct: 16  VFVDLETTGGSLADHRITEIGV------VEIGPLGVSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 47  --RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
                 +   + L   L +  +  + VAHN+ F+R   +      G+       +CT  L
Sbjct: 70  DAMVRDAPTFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPD-VLCTVRL 128

Query: 100 ARTN---GLPSSLKNACLALNF 118
           +R          L         
Sbjct: 129 SRALFPRESRHGLDALIERHGL 150


>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
 gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
          Length = 388

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 76/278 (27%), Gaps = 21/278 (7%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D   + L D TE + M    +  L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGNRLSLIDPTELTDMTP-FVALLKDTSVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++                    
Sbjct: 111 CTPFPMVDTQLMAAFLGHGLSTGFASLVEEYLGVELDKSESRT---------DWMARPLT 161

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                        L   Y K   + T+  +   +   + +  +    +  N+    +D+ 
Sbjct: 162 QKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAV-QQESDLLVSKRIRVTNEENAYLDIK 220

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEGTLKS 263
              +L+       K L     +       +    +     L +   G+      E     
Sbjct: 221 GAWQLKPSELAILKPLAMWRYREAIKRDLALNFIFKEGDLLTVARLGLTNFKKMEAEDID 280

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
           I + +        ++     +  +   +     E +  
Sbjct: 281 IRAINRHGAKIAAIV---KQAKQTPSEEYPAKIERLMD 315


>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
          Length = 864

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 354 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 411

Query: 116 L 116
            
Sbjct: 412 Y 412


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------------RT 48
           +F+D+ET    P              I     +       P +                 
Sbjct: 39  VFVDLETTGGTPAEHRITEIGV--VEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 96

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   ++L   L +  +  + VAHN+ F+R   +      G        +CT  L+R  
Sbjct: 97  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLSRAL 155

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 156 FPRESRHGLDALIARHGL 173


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------------RT 48
           +F+D+ET    P              I     +       P +                 
Sbjct: 16  VFVDLETTGGTPAEHRITEIGV--VEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 73

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   ++L   L +  +  + VAHN+ F+R   +      G        +CT  L+R  
Sbjct: 74  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPRESRHGLDALIARHGL 150


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------------RT 48
           +F+D+ET    P              I     +       P +                 
Sbjct: 16  VFVDLETTGGTPAEHRITEIGV--VEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 73

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   ++L   L +  +  + VAHN+ F+R   +      G        +CT  L+R  
Sbjct: 74  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPRESRHGLDALIARHGL 150


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------------RT 48
           +F+D+ET    P              I     +       P +                 
Sbjct: 16  VFVDLETTGGTPAEHRITEIGV--VEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 73

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   ++L   L +  +  + VAHN+ F+R   +      G        +CT  L+R  
Sbjct: 74  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPRESRHGLDALIARHGL 150


>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
 gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus]
 gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus]
          Length = 887

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------------RT 48
           +F+D+ET    P              I     +       P +                 
Sbjct: 39  VFVDLETTGGTPAEHRITEIGV--VEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 96

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   ++L   L +  +  + VAHN+ F+R   +      G        +CT  L+R  
Sbjct: 97  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLSRAL 155

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 156 FPRESRHGLDALIARHGL 173


>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
 gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus]
 gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus]
          Length = 862

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
 gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET                       L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + + + +  +++D     + HN+ F+      +   +D+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVANQIRDFVQDAE--LIIHNAPFDLGFLDAEFARLDLPPFTKHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
 gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica]
          Length = 738

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNA 112
                + L D  ++ V H +  +    ++  G+ I       T   A+  GL   SL   
Sbjct: 281 LEIFNEVLTDPKIVKVLHGATMDIQWLQRDFGLYI--VSLFDTFHAAQALGLKGHSLAFL 338

Query: 113 CLALNFSEHLTKMEEGKALIA 133
                      K +     I 
Sbjct: 339 LQHYANFVTSKKYQLSDWRIR 359


>gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
           autoantigen 2 homolog
 gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
 gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
 gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
          Length = 887

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 48/148 (32%), Gaps = 44/148 (29%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQSAMP-------- 54
            D ET   +PL   G     E A I L    W+D     V       +  +P        
Sbjct: 7   FDTETTGLEPL---GGDRVIEVAAIEL----WNDLPTGKVFHTLIDPERDIPAEASRVHG 59

Query: 55  ----------------SDLLQYL-RDETVMCVAHNSLFERILF----KKTLGIDIPSKRW 93
                           ++LL++   D     VAHN+ F+         +     +   R 
Sbjct: 60  MTSADVAGKPKFAEIAAELLEFFAEDP---LVAHNAPFDFGFLDAEFARIGRAALDRARM 116

Query: 94  ICTSVLA--RTNGLPSSLKNACLALNFS 119
           I T  LA  R  G+P+SL   C   +  
Sbjct: 117 IDTLALAKQRFPGMPNSLDALCRRFDID 144


>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
 gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 45/155 (29%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET    P                  L    +  Y +    I       DD  
Sbjct: 1   MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPDREI-------DDGA 53

Query: 42  VKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGI 86
           +++   T +          +  + L ++  +    V HN+ F+            + LG 
Sbjct: 54  IEVHQITNEFLADKPRFGDVVDEFLDFV--KGSELVIHNAAFDVGFIDSELNLLDRNLGQ 111

Query: 87  DIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
                  + T  +AR         L + C   + +
Sbjct: 112 TKDYCGVLDTLAMARKMHPGKRNDLDSLCKRYDIN 146


>gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus]
 gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus]
          Length = 861

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 351 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 408

Query: 116 L 116
            
Sbjct: 409 Y 409


>gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus]
 gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus]
          Length = 886

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 351 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 408

Query: 116 L 116
            
Sbjct: 409 Y 409


>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
          Length = 887

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
 gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 380

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 48/175 (27%), Gaps = 26/175 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E           V   +    + L    +D E V L D  E     S   Q L D
Sbjct: 36  IALDTE----------FVRIRSYYPKLGLIQL-YDGEQVSLIDPQEIQDF-SPFKQLLAD 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALNFSE 120
             ++ V H    +  +F+            + T ++A   G      L +      N   
Sbjct: 84  PKILKVLHACHEDLEVFQHYYQQ--LPAPMLDTQIMANFLGFQNSMGLASLIKHYFNLEI 141

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                  G +      +   +              W L   YCK      +  ++
Sbjct: 142 DK-----GASRTDWLARPLSN----RQLAYAAADVWYLLPLYCKMQNALEQTRWQ 187


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+    +       Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKEVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group]
          Length = 504

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 52/210 (24%), Gaps = 33/210 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         I   A+    + V L D       +       L 
Sbjct: 222 IGFDCE---GVDLCRHGALC------IMQIAF---PDAVYLVDAIEGGKELIEACKPALE 269

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE-H 121
            E V  V H+   +        GI +     + T +                   + E  
Sbjct: 270 SEYVTKVIHDCKRDSEALYFQFGIKLH--NVMDTQIAYSLLEEQEG-----KKRGYDEYI 322

Query: 122 LTKMEEGKAL---IARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        +A   K  + +    D     H    ++       DV     + +++
Sbjct: 323 SFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKM 382

Query: 178 IPLSDGE--------RDLWLLDQTINDRGY 199
           +               +L+     IND  Y
Sbjct: 383 MEKLSKVSLWRLSVRSELYCRCFCINDNKY 412


>gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis
           domestica]
          Length = 836

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   + D  E  +    L +   D +++ V H +  +    +K  G+ +   
Sbjct: 304 LMQISTRTED-FIIDTLELRSDLYILNESFTDPSIVKVFHGADMDIEWLQKDFGLYV--V 360

Query: 92  RWICTSVLARTNGLP-SSLKNACLAL 116
               T   AR   L   SL +     
Sbjct: 361 NMFDTHQAARILNLGRHSLDHLLKLY 386


>gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
          Length = 381

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTTEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++          Y   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLD------YALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRSSWLSEEM 180


>gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium
           chloromethanicum CM4]
 gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 27/148 (18%)

Query: 1   MSKLFIDIETRS--------PQPLPKVGVWAYAEQAVI--TLC----AYAWDDEPVKLWD 46
           + ++ +D ET             +  V +  + +       L     A +     V    
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61

Query: 47  ---RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL-------GIDIPSKRWIC 95
                ++      +  +L        V HN+ F+                  I  +  + 
Sbjct: 62  DAMLADKPVFAEVVDAFLEFCSDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVD 121

Query: 96  TSVLARTNGLPS--SLKNACLALNFSEH 121
           T +LAR     +  +L   C        
Sbjct: 122 TLLLARRKHPGAANNLDALCNRYGVDTT 149


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVITLCAYAWDDEPVKLW-------------- 45
           M  + ID ET + +      +     +   I        +E   L               
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIV-------EEKYFLIKPCEMRFQPMNIWI 53

Query: 46  ------DRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW 93
                 D   +   + +  ++  Y+  +  + +AHN+ F+  + +K      I  P   +
Sbjct: 54  HGIRPEDVENERTFNEIWKEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEY 111

Query: 94  ICTSVLA--RTNGLP-SSLKNACLALNFS 119
            CT V+A      LP   L     AL F 
Sbjct: 112 ACTVVMAKNYYKSLPNHKLGTVSEALGFE 140


>gi|225684515|gb|EEH22799.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb03]
          Length = 1220

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 76/268 (28%), Gaps = 11/268 (4%)

Query: 317 TGRWSGCVFQPQN--LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374
           TGR S      +   +  Q      +T+                     +++ + A  G 
Sbjct: 731 TGR-SLSDPSLKQGFILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMVRAPPGY 789

Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRA 430
             V AD+   E  + + + G+        N          KA  T +   +       R 
Sbjct: 790 VFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRN 848

Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490
             KV      Y  G K   T+       + +      ++  +++ + A ++   + D+  
Sbjct: 849 DAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGARTNRKQLSDRPF 908

Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550
                +  +    E   +  R        L   +TE         GS    R+    +  
Sbjct: 909 WRGGTESFVFNKLEEFAEQER---PRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSS 965

Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
              +   + I +    R    D +   +
Sbjct: 966 GVDYLHLLIISMDFLIRRFNLDARLAIT 993


>gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel]
 gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel]
          Length = 389

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 30/192 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E        +     Y     + L   A+      + D  ++    S L +   D
Sbjct: 28  LAVDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  ETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           E +  V H+   +      + L +    K    T          +S+   C   + S   
Sbjct: 78  EGICKVFHDCRQDLDALSQRFLRL---PKPIFDT--------QTASM--LCEYHDNSVGY 124

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
           +K+ E      +F    ++   +     +H    +    Y   DV    EL+  L+ +  
Sbjct: 125 SKLVE------QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYGVLLDILV 178

Query: 183 GERDLWLLDQTI 194
            +  L    + +
Sbjct: 179 AKGRLTWFREEM 190


>gi|262212219|gb|ACY35726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   I + G+ +V ADLAGIE R+L+        +  + NG    +           DK+
Sbjct: 13  RELFIPTPGQVMVGADLAGIELRMLSHS------LARYDNGRYADILLNGDIHQVNADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L   +   K     + + +A      
Sbjct: 67  -GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                 +  E      L G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|262212157|gb|ACY35695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGCYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDVLDKLLGAIKKASERGFIKALDGRK 143


>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
 gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
          Length = 384

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 32/181 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           + +L +D E               A      L    +D + + L D      + + L + 
Sbjct: 34  LKELAVDTE----FDRTNTYFHRLA------LIQI-YDGKEIYLIDPLAFDDLSA-LTEL 81

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
               +V+   H+   +        G +    +   T + A       SL           
Sbjct: 82  FASTSVVKALHSCSEDLEALYHQYGFEFN--QVFDTQIAA-------SLDGIG------- 125

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
               +  G   I       +    +  T        Q    Y  +DV+    ++ RL   
Sbjct: 126 ----LSVGYGNIVEHFLSVVLDKEHTKTDWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDS 181

Query: 181 S 181
            
Sbjct: 182 L 182


>gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis
           domestica]
          Length = 861

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   + D  E  +    L +   D +++ V H +  +    +K  G+ +   
Sbjct: 304 LMQISTRTED-FIIDTLELRSDLYILNESFTDPSIVKVFHGADMDIEWLQKDFGLYV--V 360

Query: 92  RWICTSVLARTNGLP-SSLKNACLAL 116
               T   AR   L   SL +     
Sbjct: 361 NMFDTHQAARILNLGRHSLDHLLKLY 386


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 38/149 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA------------------------VITLCAYA 36
           M  + +D ET +        +                                I      
Sbjct: 24  MEFVALDFETANGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT-- 81

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRW 93
               P  + D      + S   +++ D   + +AHN+ F+  + K       ++IP   +
Sbjct: 82  ----PENVADAPSFDKVWSAAREFIAD--RLVIAHNATFDMTILKAMLHWYKMEIPRIGY 135

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFS 119
            CT  L+R          L        F 
Sbjct: 136 ACTLRLSRKVWPEMNNYKLTTLSEVFGFD 164


>gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
 gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
          Length = 386

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 26/162 (16%)

Query: 33  CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92
               + D   +L D  E     S L + + D  V+ + H++  +  + ++  G D   K 
Sbjct: 40  VQLGYPDGHCELIDAPEIEDW-SPLAELMSDPNVVKILHDAQQDLTILRRVCGSD--PKT 96

Query: 93  WICTSV------LARTNGLPSSLKNACLALNFSEHLTKMEEG----KALIARFCKGS--- 139
              T +      L+ T  L   LK                      +A I          
Sbjct: 97  IFDTQLTAGFIGLSSTISLRDILKTLLKVRLAKTETQSDWVARPLTEAQIKYAEDDVRDS 156

Query: 140 ----------IDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                      D+        N +  ++    Y +RD +   
Sbjct: 157 VRLMEQILKRADALGRREWIENEMTYYEDAAIYEERDPDTEM 198


>gi|134081963|emb|CAK97229.1| unnamed protein product [Aspergillus niger]
          Length = 1108

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 68/295 (23%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 672 GSELKAMIKAPPGYSFVGADVDSQELWIAS-LVGDAQFQIHGGNAIGFMTLEGSKAAGTD 730

Query: 421 IDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   + +     R   KV      Y  G K   T+       + +               
Sbjct: 731 MHSRTAQILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSE--------------- 775

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                    Q+   +   + K   T   ++ +       G      +  E FA   +   
Sbjct: 776 ------RQTQEVATKLYKETKGTRTTRRILCEGPF-WRGGTESFVFNKLEEFAEQERPRT 828

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
                 +              +                                      
Sbjct: 829 PTLGAGITEALMRRFINKGSFMTSR----------------------------------- 853

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     D   +   
Sbjct: 854 -INWAIQSSGVDYLHLLIVAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAA 907


>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
          Length = 233

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 174


>gi|262212411|gb|ACY35822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 14/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G+ +VVADL+GIE R+LA          A  +                 DK+
Sbjct: 13  RRLFMATPGQVMVVADLSGIELRMLAHY-------LARYDTYFGDNLLNGDIHQINADKI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
              ++ +  V   A  Y  G +            L       K     E + +A      
Sbjct: 66  GISRKLVKTVC-YAFLYGAGLEKI---GYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSE 121

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                           + G  
Sbjct: 122 LLGAVKSAANRGFVKGIDGRK 142


>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891]
 gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 18/228 (7%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M +  ++ L+D +V+ V H    +  +F  + G  
Sbjct: 39  PQLGLIQL-FDGEKLSLIDPTVIEDMTA-FVELLKDTSVLKVLHACGEDLEVFHNSFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++            +   D   
Sbjct: 95  CLPYPMVDTQLMAAFLGHGLSTGFAALVENYLGVELDKSESRT-----DWLARPLSD--- 146

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                      + L   Y +   + T+  +       + +       +T+N     +D+ 
Sbjct: 147 -KQLEYAAADVYYLQPLYEQLFEKITQAGWWE-AAQQESDLAASKRIKTVNQEMAYLDVK 204

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGI 251
              +L+       K L    +K       +    +     L +   GI
Sbjct: 205 GAWQLKPSELAILKPLATWRLKEALRRDLALNFVFKENDLLTIAKLGI 252


>gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544]
 gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544]
          Length = 196

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 21/139 (15%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGVWAYAE-QAVITLCA-----YAWDDEPVKLWDRTE 49
           M+   ID ET      S   +  V + A A   +  TL       Y++ +  +      +
Sbjct: 2   MNFTAIDFETATGARDSACSVAVVTIRAGALVDSYYTLIQPPANRYSYFNTKIHGLTEAD 61

Query: 50  QSAMPSD--LLQYLRD--ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
            +       +   L    E  + VAHN+ F+  + +      G+  P+  +  T  +AR 
Sbjct: 62  TANAADFAGIWPELEAKLEGQLVVAHNAKFDMSVLRSCLARYGLQAPAFSYCDTVAIARR 121

Query: 103 ---NGLPSSLKNACLALNF 118
              N     L      LN 
Sbjct: 122 AWPNLANHKLGTVGAYLNL 140


>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
          Length = 831

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
           violaceum ATCC 12472]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 39/153 (25%), Gaps = 42/153 (27%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAV---ITLCA 34
           M ++ +D ET    P                  L    +  Y             +   +
Sbjct: 1   MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPEREIDPEAQRVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
             +                  ++  +LRD     + HN+ F+           GI+   K
Sbjct: 61  LEFLAGKPVFAKVAH------EIADFLRDAE--LIIHNAPFDVGFLNAEFAKAGIEPVGK 112

Query: 92  ---RWICTSVLARTN--GLPSSLKNACLALNFS 119
                I T   AR    G  +SL   C      
Sbjct: 113 LCASVIDTLAEARDMFPGKRNSLDALCDRFEID 145


>gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 34/150 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M ++ +D ET    P  K G     E     +       +   V +           ++ 
Sbjct: 1   MRQIVLDTETTGIDP--KEG-HRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVH 57

Query: 59  ----QYLRDE-----------TVMC----VAHNSLFERILFKKTLGIDIPSKRWI----- 94
               ++L D+           + +     V HN+ F+        G++  +K  I     
Sbjct: 58  GITNEFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQIC 117

Query: 95  ---CTSVLARTNGLPS--SLKNACLALNFS 119
               T  LAR        +L   C      
Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGID 147


>gi|262212069|gb|ACY35651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+           + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------PARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99]
 gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99]
          Length = 380

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 22/169 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
           A + L   A+D + + L D    + + S+    L +  +  V H+   +  +F +     
Sbjct: 48  ARLGLIQ-AYDGKTLALIDPVAVNNL-SEFWGLLAEPGITTVLHSCSEDLEVFAR--NGH 103

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   + + A   GL   L                  G A +               
Sbjct: 104 CQPANLFDSQIAAALCGLGHGL------------------GYAKLVEQTLDISLDKGESR 145

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           T        +    Y   DV     L+ +L+     +  L  + +    
Sbjct: 146 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQQQGRLAWVIEEGER 194


>gi|169614686|ref|XP_001800759.1| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
 gi|160702800|gb|EAT81884.2| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
          Length = 1130

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 56/489 (11%), Positives = 121/489 (24%), Gaps = 52/489 (10%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L++S    KM +GK         +    P        +            ++  
Sbjct: 457 DPWLSQLDWSGQEIKMVKGKKKNDPPRPAARQKMPGMPKWYKDLFT----KSDGPMNLTV 512

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +   L+ LS     L   D+        +D                  +  + +L  
Sbjct: 513 RTRIAPILLKLSWDGYPLVWSDKHGWTYQVPMDEVFAYN------------ERGMKELDM 560

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
               + +   A +   ++   I   D                 LAK  +        ++ 
Sbjct: 561 SEEENLKLRDATQ---YVYYKIPHKDGP--------QARCANPLAKGYLQYFEKGKLTSE 609

Query: 290 LKLNT-----------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN-----LPRQ 333
                              A                  +   S     P+N     LP+ 
Sbjct: 610 YAYAKEALEMNASCSYWISARDRITSQMVVYNNEVPGASDLTSSSPEGPENKVGFILPQI 669

Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                +  ++++                  ++S + A  G   V AD+   E  + + + 
Sbjct: 670 IPMGTVTRRSVENT-WLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSEELWIAS-LV 727

Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFK 449
           G+        N          KA  T +   +       R   KV      Y  G K   
Sbjct: 728 GDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAGILGISRNDAKVFNYGRIYGAGLKFAS 787

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
           T+       L +   +  +   ++D +  +++   + ++       +  +    E   + 
Sbjct: 788 TLLRQFNPSLTESQTSKTANDLYQDTKGKKTNRKMLHERPFWRGGTESFVFNKLEDFAEQ 847

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
            R        L   +TE         G     R+    +     +   + + +    R  
Sbjct: 848 ER---PRTPVLGAAITEALQRRYLSKGGFMTSRINWAIQSSGVDYLHLLTVSMDYLTRRY 904

Query: 570 YSDVKGDCS 578
             D +   +
Sbjct: 905 NLDARLAIT 913


>gi|89267461|emb|CAJ83573.1| Werner syndrome homolog (human) [Xenopus (Silurana) tropicalis]
          Length = 1171

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 33/197 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  DIE     P+   G     +   + L      ++   L+  +  +  P  L + L D
Sbjct: 73  LGFDIE---WPPIYTKG-----KTGKVALIQVCVSEKKCYLFHISPMAGFPKGLRRLLED 124

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---NACLALNFSE 120
           E+V  V               G+ I   +W    +++        LK         N   
Sbjct: 125 ESVKKV---------------GVGIEGDQWK---LMS---DYELKLKGFIELSEVANQKL 163

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEATRELFKRLIP 179
              +      L+    K  +            +         Y   D  A   ++++L  
Sbjct: 164 RCKEKWSLNGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLEC 223

Query: 180 LSDGERDLWLLDQTIND 196
           +   E+  + + + I  
Sbjct: 224 MDAHEKVSFCVSRGIKR 240


>gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2]
 gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2]
          Length = 382

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 5/86 (5%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           +   + D   +          + DE V+ V H +  +  +     GI         T V 
Sbjct: 48  DEAVVVDALAEGIDLKPFFDLMADEKVLKVFHAARQDIEIVWHLAGIV--PHPVFDTQVA 105

Query: 100 ARTNGLPSSLKN---ACLALNFSEHL 122
           A   G   S+                
Sbjct: 106 AMVLGYGDSIAYDQLVGRITGHKLDK 131


>gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 200

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------- 52
           M+   +D+ET        +      E   I L + + + +        +           
Sbjct: 1   MTYAVVDVETTGLD----LATDRIIEIG-IVLLSDSLE-QSGYFHSLIDPQRSITAQHIH 54

Query: 53  ---------------MPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPSKR 92
                          +   + + L D  ++ VAHN+ F+         +   GI I    
Sbjct: 55  HISSAMVADAPSFALVAERVAKVL-DGQII-VAHNAPFDLGFLNAEFARAQAGISIDRAN 112

Query: 93  WICTSVLA--RTNGLPSSLKNACLALNFSE 120
            +CT   +         SL      L    
Sbjct: 113 AVCTLDQSRIYCPEGSHSLIGLAARLGIET 142


>gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110]
 gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
          Length = 235

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            ++ +D ET     L         E   + L A       + ++   E+ +    L    
Sbjct: 3   RQIVLDTETTG---LSAENGDRIIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHG 59

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTLGI-DIPSKR-----WI 94
               +LRD+                   + HN+ F+     K L +  +P  R       
Sbjct: 60  LTTDFLRDKPKFATLANDIVEYLRGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVT 119

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +A+    G  +SL   C      
Sbjct: 120 DTLAMAKQVYPGKRNSLDALCDRFGVD 146


>gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
 gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
          Length = 870

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     V H +  + I  ++  GI +       T   +R   L   SL+     
Sbjct: 325 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERNSLEFL--- 379

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +          +    Y + D      ++ 
Sbjct: 380 ----------------LQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYD 422

Query: 176 RLIPLSDGERD 186
            +         
Sbjct: 423 LIKLELQRMAK 433


>gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6]
 gi|31505660|gb|AAP48753.1| gp14 [Enterobacteria phage SP6]
 gi|40787031|gb|AAR90005.1| 13 [Enterobacteria phage SP6]
          Length = 849

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 32/135 (23%)

Query: 556 RDVHIVLPSSRRLVYSDVKGDC--SYLNTATSQLMRERTYGGKL-----TENIVQAISRD 608
               I LPS  RL  + +       YL        R R  GG+L        ++Q     
Sbjct: 645 ARFEIELPSLARLRENVIAAGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSL 704

Query: 609 ILCEGMKN----ATKNGYDI--------VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656
            +   +        + G  +        V  VHDEI  E P+     +            
Sbjct: 705 CMKYALVKAFAVMRREGVALDNLGNPCGVANVHDEIQMEVPEEEVLYLD----------- 753

Query: 657 WAKGLPLKAEGYEAK 671
               LP   EG+E++
Sbjct: 754 --YELPFTLEGFESE 766



 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 14/146 (9%)

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           R   + +        +R   IA  GK ++  D AG+E RVL+    +             
Sbjct: 539 RHRNVVNIPARGLYPLRDLFIAGKGKMILGCDGAGLELRVLSHFMNDPE---------YQ 589

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +  +         K    +R + K    A  Y  G      +       + +       
Sbjct: 590 EIVLHGDIHTHNQLKAGLPKRDMAKTFIYAFLYGSGIANLAAVC-----GVTEDEMKEVV 644

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAV 494
                +          +     +F  
Sbjct: 645 ARFEIELPSLARLRENVIAAGNKFGY 670


>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
           Bath]
 gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
           Bath]
          Length = 267

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 41/151 (27%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL-----------CAYA----WDDEPVKLW 45
           M ++ +D ET    P  K G     E   + L                    D   +++ 
Sbjct: 1   MRQIVLDTETTGLDP--KAG-HRIIEIGCVELLDRRITQNRFHVYINPEREIDAGAIEVH 57

Query: 46  DRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPS 90
             T +          +  D L ++       + HN+ F+       L       G     
Sbjct: 58  GLTNEFLAGMPVFRNIADDFLNFI--SGAELIIHNAAFDVGFLDHELSLLGENRGRIADY 115

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
                T  +AR N      SL   C   N  
Sbjct: 116 CGICDTLAMARKNHPGQRNSLDALCKRYNVD 146


>gi|159046195|ref|YP_001541867.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
 gi|157913954|gb|ABV95386.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
          Length = 516

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 97/359 (27%), Gaps = 61/359 (16%)

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
             +A            + T E           E  ++ L Q+    G  +D   + +++ 
Sbjct: 129 AAEALAKMYLALLERAKLTGE----AERFLTVEVPVYRLLQSAMAVGIMVDRQRLSEMRA 184

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
               +     ++     D  + +  ++      L      D  ++ + +++ +L +    
Sbjct: 185 EAEHDYFTCLKNYSAKHDMPLETPNRSA-----LEEKLRADGFELDDVSIEYLLEYVPHQ 239

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           +                    +      ++D   R       ++   R            
Sbjct: 240 R-----------------DFGSDTIALQAADTARRVLGSLALSTTIMR------------ 270

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
                  +L       +R    +  L   S   R  I    G +L   D    E  ++A 
Sbjct: 271 ------PVLDVFGSRTSRIHLRSPSLQNMSKKYRGIIAGREGAELSYVDFDQYEVGIMAA 324

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451
           ++ +   +K +A G+   +                  R   K + L+  Y    K     
Sbjct: 325 LSKDCELMKLYAAGDMYDLFATTHLGL-------SGNRKAAKQLFLSYAYGMSKKALIDA 377

Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG----TACELV 506
           A   G+D  +        + F  + Q E+    +   +        L+G       +  
Sbjct: 378 AVSLGVDRTRAK------NAFGLFAQYETWKRSVWADFQANGRVATLLGNHYLRERDGP 430



 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 11/140 (7%)

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
           K L +    +  +                 +R          + R               
Sbjct: 372 KALIDAAVSLGVDRTRAKNAFGLFAQYETWKRSVWADFQA--NGRVATLLGNHYLRERDG 429

Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-GYDIVLTVHDEIVSETPDTP 640
             T++  R           +VQ  +  I    + +  K     IVL +HD ++ E   T 
Sbjct: 430 PLTAKEQRSS------VSQVVQGTASLIFKRALLDVGKLDDVTIVLPMHDALLFE--HTS 481

Query: 641 YFSVGTLCSLMTKNPSWAKG 660
             +   + +      +   G
Sbjct: 482 ADTPNKVVTAFENAMTNTLG 501


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 64  ETVMCVAHNSLFERILFKKT-LGIDIP-SKRWICTSVLARTN-GLP--SSLKNACLALNF 118
           E  + VAHN+ F+    ++  L ID       + T +L+    G     SL      L  
Sbjct: 575 EGAVLVAHNAPFDMEFLRRAELLIDRRFDNPILDTVLLSAVLFGQTEVHSLDALAHRLGI 634

Query: 119 S 119
           +
Sbjct: 635 T 635


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 36/141 (25%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58
           +D+ET        +    V+    +  +        ++        E+   P  +     
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEV--------EDHWYTMVNPERDPGPVWIHGLTS 77

Query: 59  ------QYLRD---------ETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLA 100
                    +D         E  + VAHN++F+  +  +       ++P ++ +CT  L+
Sbjct: 78  EALEGAPLFQDIAEEFTTRLEGRVLVAHNAVFDWQMIAREYARAQREVPVRQRLCTIALS 137

Query: 101 RTNGLP---SSLKNACLALNF 118
           +  GLP     L++       
Sbjct: 138 KELGLPLPNHKLESLAAHYGV 158


>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 165


>gi|307154950|ref|YP_003890334.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306985178|gb|ADN17059.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 88/301 (29%), Gaps = 39/301 (12%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAW----DDEPVKLWDRTEQSAMPS 55
           +  L++D E               +++  ++L    A+    D     + D   +     
Sbjct: 20  LKILWLDTE----------VADFKSQKPRLSLIQMLAYPQDKDGSRTFIIDVLNKRDEVD 69

Query: 56  DLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR---TNGLPSS--- 108
             ++  + +E +  V HN+  +             ++   CT  LA+    + LP S   
Sbjct: 70  YFIEKIMSNEQINKVFHNAQHDLKFL-----GGKKAQNITCTMKLAQSIPYHILPVSSLT 124

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           LK     L   ++++K E+G        +   D   +         A             
Sbjct: 125 LKTLTEHLTEFKNVSKEEQGSD---WGQRPLSDQQLHYAKMDPIYLAHIHQKLLELIKKN 181

Query: 169 ATRELFKRL----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
            T      L        + E +  +LD  IN    R      +K Q        KL    
Sbjct: 182 NTDPTRDDLTEIGKRYQEIEPEWKILDSEINHLKER--AKNAMKAQNKPENFAFKLSGSD 239

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                       Q    +  L L   I L    +  L  +L+  +I +        RL S
Sbjct: 240 RTTVKVDFAELAQLAVSQG-LDLHFPITLDKSLQKQLGDLLNKLSIQEE--KTTTWRLLS 296

Query: 285 S 285
            
Sbjct: 297 K 297


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 39/145 (26%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDL-- 57
           F+D+ET         G  A      I    +             +  +T  S     L  
Sbjct: 15  FLDLETTG-------GSVATDRITEI-GIQFWRAGECVGQWQTLVNPKTRISPFIEQLTG 66

Query: 58  --------LQYLRD---------ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
                        D         + V+ VAHN+ F+    K   + LG  +   + +CT 
Sbjct: 67  ISNAMVADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLG-RMFVAKVLCTV 125

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
            L+R         ++          
Sbjct: 126 KLSRRLYPEFRRHNMDALIERHGLQ 150


>gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05]
 gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05]
          Length = 177

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +      +D   +++   T +  
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 52  ---AMPSDLLQY---LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++  +   L    ++  AHN+ F+  +      +  GI+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARY-GIEEPHYLVIDTLASSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     ALN  
Sbjct: 120 LLEPELPDHKLDTVSEALNVE 140


>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 30/150 (20%)

Query: 1   MSKLFIDIETRSPQP-----LPKVG------------VWAYAEQAV--ITLCAYAWDD-E 40
           M ++ +D ET    P     + ++G             + Y       I   A+A     
Sbjct: 1   MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPERDIDAGAFAVHGLS 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS------KRWI 94
              L D+   + +   L++++    ++   HN+ F+         +           +  
Sbjct: 61  REFLSDKPIFANIVEQLIEFVDGAEILI--HNAAFDLGFLDNEFALLKRPPFRNLASKIT 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFSEHL 122
            T + AR    G  +SL   C   + S   
Sbjct: 119 DTLLDARQMFPGKRNSLDALCERFSISNKH 148


>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
 gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
          Length = 442

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 37/180 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID E        +   + Y+ +A   L     +     L D      +   L + L  
Sbjct: 66  VAIDAE--------RASGYRYSSRAY--LIQLRREGSGTFLVDPIPF-VILPQLQEALE- 113

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
                + H +  +     +   + +   R   T +  R  G P   L      L      
Sbjct: 114 -GTEWILHAATQDLPCLAE---VGLLPSRLFDTELAGRLLGYPRVGLATLVETL------ 163

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                         + + +    D +     + W    EY   DVE   EL   L    +
Sbjct: 164 -----------LGSRLAKEHSAVDWSTRPLPEPW---LEYAALDVEVLAELRDLLADELE 209


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 33/145 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------- 50
           S +  DIET     +    +   A    I       D     +  +              
Sbjct: 398 SFVVFDIETTGLSSINDNIIEIGA--VKIKNFQI-VDTFETFVNPQVHISKFITKLTGIT 454

Query: 51  ----------SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
                       +    L +++D   + VAHN+ F+    K   + LG+++     + T 
Sbjct: 455 DDMVKEYPSIEEILPKFLDFIKDS--ILVAHNANFDVTFIKTKARNLGMEVD-NPVLDTL 511

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
            L+R          L      L  S
Sbjct: 512 ELSRHMYENLKNYKLDTVAQHLGVS 536


>gi|316967875|gb|EFV52241.1| putative ubiquitin--protein ligase [Trichinella spiralis]
          Length = 1284

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 4/138 (2%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +R  IIA  G   V AD+   E  + A  +         +      +    K+
Sbjct: 772 PDRIGSELRGLIIAPKGYCFVGADVDSQELWIAALFSDSYGVKIHGSTPISWILLKGDKS 831

Query: 417 FNTPIDKVSKEQ----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T    ++ ++    R+  K++     Y  G      +       L        +   +
Sbjct: 832 KGTDQHSLTAKEMGVSRSQAKILNYGRIYGAGRPFATRLLKTFLPTLSDEDVKKMARKLY 891

Query: 473 EDWEQAESHHLWMQDQYP 490
              + +  +   + ++  
Sbjct: 892 RKTKGSAVYLRELTEKGR 909



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 49/177 (27%), Gaps = 41/177 (23%)

Query: 54  PSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-RTNGL---- 105
             DL+       D   + + HN  F+R   K+   +     R+  T  +     GL    
Sbjct: 230 LDDLIPLGRKADDPERIIIGHNVGFDRTFVKEEYFLKSSRLRFWDTMSMHIAVCGLAGDQ 289

Query: 106 -------------PSSLKNA---------CLALNFSEHLTKMEEGKA-LIARFCKGSIDS 142
                         +S +              L F             LI        +S
Sbjct: 290 RVLFMAARKGNRTKASEEALVHTENPTKESNVLGFQNWKWLDVTSTNSLIEVHRFHCPNS 349

Query: 143 PPYDC----------TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
             +            T ++  + +QL   YC  DV AT E+F  L+         + 
Sbjct: 350 GLFVAKELRDLFLVGTMSDIREKFQLLMTYCATDVAATFEVFSMLMDQFWQRYANYH 406


>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
 gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 40/154 (25%), Gaps = 37/154 (24%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVIT-----LCAYAWDDEPVKLW-------- 45
            +  D+ET         + ++G     +   +      LCA                   
Sbjct: 41  YVVFDLETTGFNKKEDRIIEIGAIK-VKNGRVVDRFSTLCA-PIKGGKPMYISAKITEVT 98

Query: 46  -----DRTEQSAMPSDLLQYLRD--ETVMCVAHN-SLFERILFK---KTLGIDIPSKRWI 94
                D   Q      +  ++    E+ + VAHN   F+    K   K   ++      +
Sbjct: 99  GIKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFKFTHIL 158

Query: 95  CTSVLARTNG-------LPSSLKNACLALNFSEH 121
            T +L++            +  +           
Sbjct: 159 DTMLLSKALNYVNNGNIPNNKQETLARYFGVDYQ 192


>gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L             + +   A+ D  + L D  E  ++  +     L 
Sbjct: 70  IGFDCE---AVDL--------CRDGALCIIQLAFPD-AIYLVDAIEGGSVLIEACKPALE 117

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            + V  V H+   +        GI +     + T +     
Sbjct: 118 SDYVTKVIHDCKRDSEALYFQFGIKLN--NVVDTQIAYSLL 156


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 31/181 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLWDRTEQSA-- 52
            + +DIET         + ++G     E   IT   +   D E   PV++ + T      
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVK-IENGQITERFSTFVDPEGKIPVRISELTGIYQDM 448

Query: 53  ------MPSDLLQY--LRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 +   +L++      +V+ VAHN+ F+    KK     GI I    +I T  L+R
Sbjct: 449 VDKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSR 506

Query: 102 TN---GLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                     L      LN             E  A I       + +  Y   +  +  
Sbjct: 507 RLLTDLSSHKLNKVAEFLNIELKHHHRADSDAETTAGIFISLVERLKARGYKWLKELNSI 566

Query: 155 A 155
            
Sbjct: 567 E 567


>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 383

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 45/166 (27%), Gaps = 21/166 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   A       L D            + + +E V+ V H +  +  +    LG D+ 
Sbjct: 39  LCLIQMA-APGVTALIDPLAPDIDLKPFFRLMANEAVVKVFHAARQDIEIIV-HLG-DLV 95

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 T V A   G                           + +   G+        T 
Sbjct: 96  PHPVFDTQVAAMVCGFG------------------DSVSYDQLVQRITGARLDKSSRFTD 137

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
             H        +Y   DV    E+++ L    + E     L++ + 
Sbjct: 138 WRHRPLSDKQLDYALADVTHLIEVYQHLSAELERENRAHWLNEEME 183


>gi|262212153|gb|ACY35693.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212177|gb|ACY35705.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGPDKLLEAIKKASERGFIKALDGRK 143


>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
 gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 40/154 (25%), Gaps = 43/154 (27%)

Query: 1   MSKLFIDIETRS------------------PQPLPKVGVWAY--------AEQAVITLCA 34
           M ++ +D ET                     + L       Y        A    +   +
Sbjct: 1   MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPEREVDAGAFEVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-------LGID 87
                    L D+ +   +  D L ++       V HN+ F+               G  
Sbjct: 61  ------NEFLADKPKFKQVAQDFLDFI--SGAELVIHNAAFDVGFIDYEFSLLGAPFGKV 112

Query: 88  IPSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
                 + T ++AR    G  ++L   C      
Sbjct: 113 SDYCSVVDTLMMARKKHPGQKNNLDALCKRYGID 146


>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
 gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 24/139 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVIT---------LCAYAWDDEPVKLWDRTEQS 51
               ID ET + +      V         I          L ++   +  +      +  
Sbjct: 3   KFAAIDFETANEKRNSACSVGVVIMNDTEIIDEFYTLINPLASFRSGNVFIHGITEEQVQ 62

Query: 52  AMP--SDLLQ----YLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICTSVLART 102
             P  ++L      YL D   + +AHN+ F+  + +++L   DIP   +  +CT  ++R 
Sbjct: 63  EAPTFAELWPTLSAYLED--TILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVKISRL 120

Query: 103 NGL---PSSLKNACLALNF 118
                    L         
Sbjct: 121 IWPQLENHKLHTVANHHGI 139


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 16/96 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GI 86
           D  PV +   T +          +   + Q L     + VAHN+ F+           G+
Sbjct: 64  DPGPVHVHGLTAERLHGAPAFEEVAQRISQMLE--GRVLVAHNAQFDYDFLAHEFARAGV 121

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
            +P  R +CT  L R    P     L          
Sbjct: 122 SLPVARRLCTLALNRRVDPPTQDLRLGTLAAHYGVP 157


>gi|187932764|ref|YP_001885887.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 16/189 (8%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PS 107
             + ++LL +L D  +  + HN  FER        I         +  L+          
Sbjct: 77  EDIKNELLVFLED--LPLICHNGGFERKFLSCH--IPEIKNEIFDSMELSAILEPWRKEY 132

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +L +   ++     L K E  + L        + +              +    Y   D 
Sbjct: 133 NLDSLIKSI---TILDKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNIIDK 189

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           +     ++ L      E  L  +   I D  Y +  +   K    + +     ++    L
Sbjct: 190 D-----YEFLKHWEWKEYLLKPILFNIEDYPY-VSYEENKKQDVKLKRIPIDYEKYENLL 243

Query: 228 TDGIIRSSR 236
            +  I ++ 
Sbjct: 244 VNEEIWNNG 252


>gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7]
 gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7]
          Length = 177

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 35/147 (23%)

Query: 1   MSKLFIDIETRSP----------------------QPLPKVGVWAYAEQAVITLCAYAWD 38
           M+ + +D ET S                         L K     +     +        
Sbjct: 1   MNFVALDFETASNQRHSACSVALTVVRKSKIVDHYYSLIKPETEFFWRNVQVHGIT---- 56

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWI--C 95
           +  VK  D      +   +  +   E  + VAHN  F+R + +  L   D+P   +   C
Sbjct: 57  ENDVK--DAPSFPEVWEQIKPFFT-ENKLIVAHNLPFDRGVLQGCLDYYDLPQPHFQTLC 113

Query: 96  TSVLARTN---GLPSSLKNACLALNFS 119
           T   +R          L   C  LN S
Sbjct: 114 TVQSSRKLITEIPNHKLNTVCDHLNIS 140


>gi|262342117|gb|ACY54569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R     S G+ +V ADLAGIE R+L+        +  +  G    +        
Sbjct: 7   PSDSRFRELFQPSPGQVMVGADLAGIELRMLSHF------LARYDGGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K       + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKQLSSSAAKKKGKEIRTAYVEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 23/140 (16%)

Query: 3   KLFIDIETRSPQ--PLPKVGVWAYAEQAVITLCA-YAWDDEPVKLWDRTE---------- 49
            +  D+ET +     + ++G+  Y     +   + +    EP+  ++             
Sbjct: 126 FVAFDVETANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGITAEQ 185

Query: 50  --QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVL--- 99
                  +++L  + D    +  VAHN+ F+     +     GI+ P   + C+  L   
Sbjct: 186 VAGEPAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSRS 245

Query: 100 ARTNGLPSSLKNACLALNFS 119
           +R       L     AL   
Sbjct: 246 SRLKFHNHRLPTVAQALGVE 265


>gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D
           C-terminal domain-containing protein / HRDC
           domain-containing protein [Arabidopsis thaliana]
          Length = 838

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     V H +  + I  ++  GI +       T   +R   L   SL+     
Sbjct: 293 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERNSLEFL--- 347

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +          +    Y + D      ++ 
Sbjct: 348 ----------------LQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYD 390

Query: 176 RLIPLSDGERD 186
            +         
Sbjct: 391 LIKLELQRMAK 401


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 23/140 (16%)

Query: 3   KLFIDIETRSPQ--PLPKVGVWAYAEQAVITLCA-YAWDDEPVKLWDRTE---------- 49
            +  D+ET +     + ++G+  Y     +   + +    EP+  ++             
Sbjct: 201 FVAFDVETANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGITAEQ 260

Query: 50  --QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVL--- 99
                  +++L  + D    +  VAHN+ F+     +     GI+ P   + C+  L   
Sbjct: 261 VAGEPAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSRS 320

Query: 100 ARTNGLPSSLKNACLALNFS 119
           +R       L     AL   
Sbjct: 321 SRLKFHNHRLPTVAQALGVE 340


>gi|326804439|ref|YP_004327243.1| DNA polymerase [Pseudomonas phage PAK_P1]
 gi|290873852|gb|ADD65055.1| DNA polymerase [Pseudomonas phage PAK_P1]
          Length = 911

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 60/224 (26%), Gaps = 68/224 (30%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVM-CVAHN-SLFERILFKKTLGIDI---------- 88
           PV+            +   Y+    +   VAHN   F+ +  K    +D           
Sbjct: 112 PVEYIHLP-----LKEFKNYVAKRRIKRVVAHNMINFDLMSMKLVEDMDFTIGVEHRDGG 166

Query: 89  -----------PSKRWICTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIA 133
                          +  T V+++T         SL              K++  K L  
Sbjct: 167 LTTWSADTWMGKQVVFDDTLVISKTCNPDLFGGHSLDKLSRRAGGDT---KIDFRKHL-- 221

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------- 183
                              +        YC  DV+A   ++  L    D           
Sbjct: 222 -------------APDVRFLDFAADMLYYCIYDVKANTAVWHWLQDHEDYQLSDRDNYIK 268

Query: 184 --------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                   E+ +  +      RG+ +++DL  K  + +  + ++
Sbjct: 269 NWLSPIQLEKKVAEIITYQEHRGFVLNVDLCEKAVKDLDAKMEE 312


>gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
 gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           E   + D              + +E V+ V H +  +  +     GI         T V 
Sbjct: 48  EEALVIDALADGIDLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 106 AMVLGYGDS 114


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
 gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
          Length = 381

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 91/312 (29%), Gaps = 23/312 (7%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +     +       + L    +D E V L D  E S   S  +Q L +
Sbjct: 36  IALDTE-----FVRTKSFY-----PKLGLIQL-YDGEQVSLIDPFELSDF-SPFIQLLAN 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           + V  V H    +  +F+            + T ++A       +     + L       
Sbjct: 84  QKVTKVLHACSEDLEVFQHYFQQ--LPTPMLDTQIMAAFL-QHGNSIGLAILLKH-YFKL 139

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           ++++G +      +   D   +          W L   Y +   +  +  ++  +  +D 
Sbjct: 140 EIDKGISRTNWLARPLSDVQLH----YAAADVWYLLPLYQRMQQKLAQTSWQSAV-QNDC 194

Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243
           E  L    Q  +       +    KL        K L +   +       +         
Sbjct: 195 ENLLNKYTQIKDSDNAYFSISGAWKLNSQELMRLKLLAKWRQEEAIKRNLALNFVVRAEH 254

Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303
            + L         +   L   LS   +    K ++     ++ +           V+ D 
Sbjct: 255 LILLAQH--NPKYTSQLLSIGLSPLEVRIHGKKILQLLEKANKAPAYDYPPPILRVTDDH 312

Query: 304 RLRGTLQFYGAS 315
           R R  ++   A+
Sbjct: 313 RYRVAIKLLQAT 324


>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
          Length = 497

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA 115
           L + L D  ++ V H +  +    +K  G+ +       T   AR   L   SL +    
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--VNMFDTHQAARLLNLARHSLDHLLRL 409

Query: 116 L 116
            
Sbjct: 410 Y 410


>gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
 gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           E   + D              + +E V+ V H +  +  +     GI         T V 
Sbjct: 48  EEALVIDALADGIDLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 106 AMVLGYGDS 114


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
          Length = 834

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     V H +  + I  ++  GI +       T   +R   L   SL+     
Sbjct: 288 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERNSLEFL--- 342

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +          +    Y + D      ++ 
Sbjct: 343 ----------------LQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYD 385

Query: 176 RLIPLSDGERD 186
            +         
Sbjct: 386 LIKLELQRMAK 396


>gi|262342251|gb|ACY54636.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   I + G+ +V ADLAGIE R+L+        +  + NG    +           DK+
Sbjct: 13  RELFIPTPGQVMVGADLAGIELRMLSHS------LARYDNGRYADILLNGDIHQVNADKI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L   +   K     + + +A      
Sbjct: 67  -GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                 +  E      L G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 758

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 41/158 (25%), Gaps = 22/158 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E             +Y   Q  + L   +   E   +     +  M   + + 
Sbjct: 261 KEIAVDLE-----------HHSYRSFQGFLCLMQISTRFEDFIIDTLALREEMYK-INEI 308

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN-ACLALNF 118
             D  ++ V H +  +    ++  G+ +       T   ART      SL        N 
Sbjct: 309 FSDPNILKVMHGADSDIGWLQRDFGVYV--VNMFDTGQAARTLHEDRFSLAYLLSKYCNV 366

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                       L     +              H   +
Sbjct: 367 DAQKQ-----YQLADWRIRPIPKEMILYAQEDTHYLLY 399


>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 45/155 (29%)

Query: 1   MSKLFIDIETRSP-----QPLPKVG-------------------VWAYAEQA--VITLCA 34
           M ++ +D ET          + ++G                        EQ    +T   
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 35  YAW-DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGI 86
             + DD+P           +  + L ++  +    + HN+ F+               G 
Sbjct: 61  LEFLDDKPGFA-------QIADEFLAFI--DGAELIIHNAAFDLGFLDNELSLLGPQYGK 111

Query: 87  DIPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
                  I T  +A  R  G  +SL   C  L   
Sbjct: 112 ITDRCTVIDTLAMARERFPGQRNSLDALCKRLGVD 146


>gi|167521656|ref|XP_001745166.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776124|gb|EDQ89744.1| predicted protein [Monosiga brevicollis MX1]
          Length = 882

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/330 (10%), Positives = 71/330 (21%), Gaps = 74/330 (22%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P       +  + ++      +   P       +++ I A  G KLV AD+   E  + 
Sbjct: 548 IPMVLPFGTVTRRAVEKTWMTASNPKPQ-RIGSELKAMIQAPPGYKLVGADVDSQELWIA 606

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449
           + I G+          E               +  +       K+    LG         
Sbjct: 607 SVI-GDQRL-----GREHGATAMGWMTLQGTKNDGTDMHSMTAKI----LGINRDEAKIF 656

Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509
                 G      +  ++  +                           +     +     
Sbjct: 657 NYGRIYGAGKAFAASLLQKFNP-------------------------TITEREAQA---- 687

Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569
                                  +       +R+A          +  +   L       
Sbjct: 688 --------------------KAEELYLETKGKRIAGARGGYFDGSESHMFTSLEDIATAA 727

Query: 570 YSD-------VKGDCSYLNTATSQLMR-ERTYGGKLTENIVQAISRD---ILCEGM---K 615
                     +       N     L      Y       +VQ+ + D   ++   M    
Sbjct: 728 TPRTPVLGFQITDGLLPRNFMHRFLCVSMSQYMTSRVNWVVQSSAVDFLHLMITSMDHFI 787

Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                   + +T+HDEI     D     V 
Sbjct: 788 RTYGLRARLCITIHDEIRYIVADEDIARVA 817


>gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
 gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 39/151 (25%), Gaps = 33/151 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-----------------AYAWDDEPVK 43
           + ++ +D ET       K G     E   + L                  A +     V 
Sbjct: 2   LREIVLDTETTGTD--AKNG-DRLIEIGCVELINHVQTGKFYHQLINPQRAVSEGAFAVH 58

Query: 44  LWDRT--EQSAMPSDLLQYL--RDETVMCVAHNSLFERILFKKTL-------GIDIPSKR 92
                      + +D++            V HN+ F+                  IP + 
Sbjct: 59  GISDAMLADKPVFADVVDAFVAFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIPLED 118

Query: 93  WICTSVLARTNGLPS--SLKNACLALNFSEH 121
            + T +LAR     +  +L   C        
Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTT 149


>gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 38/148 (25%), Gaps = 40/148 (27%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----------PVKLWD----- 46
            + +DIET    P          E  +I + A+  + E           P          
Sbjct: 12  YVVLDIETTGLNP---------DEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITE 62

Query: 47  -------RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSK---RWI 94
                            ++    +  +  + V HN  F+     K   I +  K     I
Sbjct: 63  ITGITNAMLVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNI 122

Query: 95  CTSVLARTNGL---PSSLKNACLALNFS 119
           CT  L++          L       N  
Sbjct: 123 CTLELSKKLIPNLKSYKLSAVADYFNIK 150


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEI--IDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G++      I T  
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 534

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 535 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 594

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 595 NDSMGQGDAYK 605


>gi|262212141|gb|ACY35687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLGAIKKASERGFIKALDGRK 143


>gi|255953429|ref|XP_002567467.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589178|emb|CAP95318.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1142

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 8/222 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 699 GSELKAMIKAPPGYSFVGADVDSQELWIAS-LVGDASFQIHGGNAIGFMCLEGSKAEGTD 757

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   S       R   KV      Y  G K   T+       L +      + + +++ +
Sbjct: 758 LHSRSASILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSLTEKQTQETAKNLYKETK 817

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              +    + +        +  +    E      R        L   +TE         G
Sbjct: 818 GTRTSRRLLSETPFWRGGTESFVFNKLEEFADQER---PRTPALGAGITEALMRRFINKG 874

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           S    R+    +     +   + + +    R      +   +
Sbjct: 875 SFMTSRINWAIQSSGVDYLHLLIVSMDYLIRQYNIKARLAIT 916


>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
 gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
          Length = 370

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 61/224 (27%), Gaps = 31/224 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E      + +   +       I L     DD    L D    S +   L   L 
Sbjct: 24  EIAVDTE-----FMRRNSYY-----PHIALLQLCTDD-HAWLIDPLTISNL-DGLRALLT 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFS 119
           D   + V H+   +  +F+  LG  +     + T       G    L         L   
Sbjct: 72  DSACIKVLHSCSEDLEVFRHWLG--VLPSPLVDTQRATALLGKGFGLGYRALVKELLGVE 129

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRL 177
                   G+       +   +S  +           AW++  E  +        +   L
Sbjct: 130 LDK-----GETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQG----RMQWVL 180

Query: 178 IPLSDGERDLWLLDQTINDR---GYRIDLDLVLKLQELIAQERK 218
               +  R L   D  I  R     R+    +  L+ L      
Sbjct: 181 DEGEEAIRLLKDRDGQIYRRVKSASRLSRRQLEALRRLCEWRED 224


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 46/140 (32%), Gaps = 25/140 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLWDRTEQSAMP 54
            + +DIET         + ++G     E   I    +   D E   PV++ + T      
Sbjct: 390 FVVVDIETTGFDSQRDKIIEIGAVK-IENGQIIERFSTFVDPEGKIPVRISELTGIYQDM 448

Query: 55  SDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
            D    L D            + VAHN+ F+    KK     GI I    +I T  L+R 
Sbjct: 449 VDKAPKLNDAILEFEKFASGSILVAHNAQFDIGFLKKAYHECGI-IFDYTYIDTLELSRR 507

Query: 103 N---GLPSSLKNACLALNFS 119
                    L      LN  
Sbjct: 508 LLTDLSSHKLNKVAEFLNVE 527


>gi|262212395|gb|ACY35814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 10/139 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G+ +V ADL+GIE R+L+          A  +                 DK+
Sbjct: 7   RRLFMATPGQVMVGADLSGIELRMLSHY-------LARYDTYFGDNLLNGDIHQLNADKI 59

Query: 425 SKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483
               R + K +  A  Y  G +    +          +        +  E          
Sbjct: 60  -GIIRKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKVKAKGREIKEAFIEAIPGLSDLLS 118

Query: 484 WMQDQYPEFAVKDKLIGTA 502
            ++           + G  
Sbjct: 119 AVKC-AANRGFVKGIDGRK 136


>gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 31/146 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            + +D+ET         + ++G     E  ++       +                   +
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93

Query: 45  WDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW----IC 95
            D      +    + +L            V HN  F+           I    +      
Sbjct: 94  ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTR-HIAGCGFACADYD 152

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R          L +  +    
Sbjct: 153 TMQISRALFPAQRHHRLADLIVRFGI 178


>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 41/152 (26%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVWAYA--------------------------EQAVITLC 33
           M + +  D ET    P     V   A                          E + +   
Sbjct: 1   MKRSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPERDVPEEASRVHGF 60

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
             A  +   K         +  D L ++ D+    +AHN+ F+        K+     + 
Sbjct: 61  TRADLEGKPKFA------EIADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLG 112

Query: 90  SKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
             R + T  +A  R  G+P+SL   C      
Sbjct: 113 LDRMVDTLDMARERFPGMPNSLDALCRRFGVD 144


>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
           biovar Abortus 2308]
 gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
 gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M163/99/10]
 gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
 gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
 gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
 gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
 gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M292/94/1]
 gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
 gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
 gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
 gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
 gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
 gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
           melitensis biovar Abortus 2308]
 gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
 gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 165


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 27/144 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEP-----VKLW-------- 45
            +  DIET    P    + + G   Y +   +       + E      +           
Sbjct: 421 YVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVESIQMFINPEEKISDKIFAITKISNEDV 480

Query: 46  -DRTEQSAMPSDLLQYLRDETVMCVAHN-SLFERILF---KKTLGIDIPSKRWICTSVLA 100
            D  +       +  ++ D   + +AHN   F+        +   +DI     I T  ++
Sbjct: 481 KDALKIKEALVKIKDFIGDS--VLIAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQIS 538

Query: 101 RTNGL---PSSLKNACLALNFSEH 121
           R         SL            
Sbjct: 539 RAINEQIHGHSLGVIARKYKIDYD 562


>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
 gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
          Length = 860

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 46/195 (23%), Gaps = 28/195 (14%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69
           T     L    +  Y       L   +  DE   + D          L +   +  ++ V
Sbjct: 288 TEFSVDLEHHEMRTYLGLT--CLIQISTRDED-FIIDPFPMWDCIGILNEPFTNPKILKV 344

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEG 128
            H +  + +  ++  GI I       T V  +    P  SL                   
Sbjct: 345 FHGADNDVLWLQRDFGIHI--VNLFDTYVAMKKLKYPKFSLAYLAFR-------FADVIL 395

Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERD 186
                                            Y + D       +  L        ++D
Sbjct: 396 DKQYQL-------------ADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDKKD 442

Query: 187 LWLLDQTINDRGYRI 201
           L ++    ND   R+
Sbjct: 443 LNVVYSECNDLCVRV 457


>gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 394

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 48/195 (24%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E      +     +       ++L   ++  E   + D        S + + +
Sbjct: 22  KFIAVDTE-----FIRNNLTYY----PRLSLIQISY-GEKSFIVDVLVPGIDLSLIKKIM 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  +  V H+   +       L           T V A                     
Sbjct: 72  LNREITKVFHSCRQDIESLLTVL--KCVPTPIFDTQVAAMFC-----------HYYHDFI 118

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    +A     + +S       +           Y   DV    +L + L   
Sbjct: 119 GYSKVVEQYQGVALDKIKAKNSDWLKRPLSEDQLD------YAVNDVIHLYDLHQILCNK 172

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 173 LEENNRMGWFQEEME 187


>gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
 gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
          Length = 359

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 31/200 (15%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A   + + +        M   L  +L DE++  V H++  + + F+   G  
Sbjct: 36  PQLALVQMAVGQDILLIDPLIPG--MTEALAHWLADESITKVMHSASEDLVAFRWACG-- 91

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +  +    T + A   G+   +                  G   +     G   +     
Sbjct: 92  VLPRPLFDTQIGASLAGIGGGM------------------GYQKLVAEITGVALAKGETR 133

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           +        +   +Y   DVE    L   +            L           D + +L
Sbjct: 134 SDWMRRPLSESQLQYAADDVEHLFALHDAIDARLQALGRQQWLHD---------DGERLL 184

Query: 208 KLQELIAQERKKLDEDIVKL 227
                       L     + 
Sbjct: 185 ASVANDEDRWPHLAMRSAQF 204


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 33/148 (22%)

Query: 2   SKLFIDIETRSP-----QPLPKVGVWAYAEQAVITL----------CAYAWDDEPV---- 42
            ++ +D ET          + ++G     ++  ++            ++    + V    
Sbjct: 6   RQIVLDTETTGLEWSKGNRIVEIGAVELLDR-RLSGDKFHRYLKPDVSFESGAQEVTGLT 64

Query: 43  --KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGIDIPSKRW 93
              L D+ E S +    L Y+       + HN+ F+               G        
Sbjct: 65  MEFLADKPEFSMIADKFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITDRASV 122

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           + T V+AR    G  +SL   C  L   
Sbjct: 123 LDTLVMARERYPGQRNSLDALCKRLGVD 150


>gi|229472301|gb|ACQ72665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRTLFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|229472517|gb|ACQ72773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 4   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 57

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 58  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 116

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 117 -LDKLLAAIKTASERGFIKAIDGRR 140


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 64  ETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNF 118
           +  + VAHN+ F+    ++   +   +     + T +L+          +L   C  L+ 
Sbjct: 358 KDAVIVAHNAPFDMAFLQRYGHMSGHVWDHPILDTVLLSAVVFGAEQEHTLDALCARLDI 417

Query: 119 S 119
            
Sbjct: 418 E 418


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 40/148 (27%), Gaps = 38/148 (25%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL- 57
            +F+D+ET         + ++GV                 +    +   T        L 
Sbjct: 35  IVFVDLETTGADAQRDRITEIGVVEVGPDG--------IQEWDTLVDPLTSIPPFVQGLT 86

Query: 58  ----------------LQYLRDE--TVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
                            + L ++    + VAHN+ F+    K      G+       +CT
Sbjct: 87  GITDEMVRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFR-ADVLCT 145

Query: 97  SVLARTNGLP---SSLKNACLALNFSEH 121
             L+R+         L         +  
Sbjct: 146 LRLSRSLFPSVERHGLDALIARFGLTPK 173


>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
 gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 5   FIDIETRSPQPLPKVGVWAYA---EQAVIT-----LCAY-AWDDEPVKLWDRTEQSAM-- 53
           F+D+ET    PL    +   A   +   I      L    +  D   +L   T +  +  
Sbjct: 111 FVDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PSDLLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRW-ICTSVLA--RT 102
                   +L  +L +   + VAHN+ F+     +     +  P     +CT  L+    
Sbjct: 171 PSAHEALQELRIFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSSLKNACLALNF 118
             +  SL      L F
Sbjct: 229 LSMRYSLSFLKELLGF 244


>gi|262342205|gb|ACY54613.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + +G    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHGYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|229472509|gb|ACQ72769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRRLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 384

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 64/225 (28%), Gaps = 34/225 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A DD  V +    E   +       L 
Sbjct: 22  YVAVDTE------FMRESTFW----PQLCLIQAAGDDTEVLIDPLAEGLDL-QPFYDLLT 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D+ V+ V H    +  +F    G  I  K    + + A   GL  S              
Sbjct: 71  DQNVIKVFHACRQDLEIFF-HEGGGIIPKPLFDSQIAAMAVGLGDS------------IS 117

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   L+    K ++D        +    + +   EY   DV   R+LF  L     
Sbjct: 118 Y-----DNLVRALVKVNLDKGSRFTDWSRRPLSDKQ-KEYALADVTHLRDLFPILREKLA 171

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
                  L + +             ++    A +R KL +   K 
Sbjct: 172 KVGREAWLAEEMKTLTDP----ATYEMHPEDAWKRLKLRKTTAKW 212


>gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
 gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 38/150 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +DIET    PL         E   + +                       A+A  
Sbjct: 1   MREIVLDIETTGLDPLRG---DRVVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVH 57

Query: 39  DEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSK 91
               +            +  D L+++ D     V HN+ F+         +     I   
Sbjct: 58  GLSSEFLAEKPLFTH--IVDDFLEFIGDA--PLVIHNASFDISFINAELDRLKMRTIGRD 113

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
           R + T +LAR      S  L + C      
Sbjct: 114 RLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|262342303|gb|ACY54662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     E +   
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSAKAKKKGKEIREAYIDV 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E      + G  
Sbjct: 117 IDGLDKLLAAIKTASERGFIKAIDGRK 143


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 24/135 (17%)

Query: 3   KLFIDIETRSPQP-----------LPKVGVWAYAEQAVIT----LCAYAWD----DEPVK 43
            +  DIET    P           + K G     EQ  I     L ++  +     + + 
Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASIIKNGSIVAREQFFIKASKPLSSFTTNLTGITDKML 460

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLG--IDIPSKRWICTSVLA 100
             +  E       +L+   ++  + +AHN+ F+   +F+K L     IPS  ++ T +++
Sbjct: 461 QEEGIELKTALERILKLFENK--IALAHNAQFDMNFVFQKLLDNCYAIPSISFVDTLMIS 518

Query: 101 RTNGLPSSLKNACLA 115
           R      S       
Sbjct: 519 RIIFPNKSKHRLGDY 533


>gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
 gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLC-----AYAWDDEPVKLWDRTEQ 50
           M+ + ID ET      S   +    V        +         + W +  V      + 
Sbjct: 1   MNFVAIDFETAAPARASACSIALTVVQNDQITDELYSLINPETKFHWRNVQVHGIHEADV 60

Query: 51  SAMPS--DLLQYLR---DETVMCVAHNSLFERILFKKTL-GIDIP--SKRWICTSVLART 102
              P+  +L   L+       + VAHN+ F+  + KKTL   ++     + + T   +R+
Sbjct: 61  QDAPTFPELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTLRTSRS 120

Query: 103 N--GLP-SSLKNACLALNFS 119
                P   L   C  L   
Sbjct: 121 FFPNYPNHKLNTLCDNLGIE 140


>gi|328543996|ref|YP_004304105.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
 gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
          Length = 394

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 21/168 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A   +   + D        +  L  +R+E V  V H +  +  +    LG  
Sbjct: 37  PKLCVIQMA-GPDDAVIVDALADGLDLAPFLDLMRNERVTKVFHAARQDIEIV-YHLG-G 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G   S                      L+ R     ID      
Sbjct: 94  LIPHPLFDTQVAAMVCGFGDS------------ISY-----DQLVQRITGARIDKSSRFT 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
             A      +   +Y   DV   R++++ L      +     ++  + 
Sbjct: 137 DWARRPLTQKQL-DYALADVTYLRDVYRFLKANLAEQDRSHWVEDEME 183


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 31/181 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLWDRTEQSA-- 52
            + +DIET         + ++G     E   IT   +   D E   PV++ + T      
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVK-IENGQITEKFSTFVDPEGKIPVRISELTGIYQDM 448

Query: 53  ------MPSDLLQY--LRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 +   +L++      +V+ VAHN+ F+    KK     GI I    +I T  L+R
Sbjct: 449 VDKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSR 506

Query: 102 TN---GLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                     L      LN             E  A I       + +  Y   +  +  
Sbjct: 507 RLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTAGIFISLVERLKARGYKWLKELNSI 566

Query: 155 A 155
            
Sbjct: 567 E 567


>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
          Length = 804

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           +++ +D+E  S +    V            L   +  D    L D     +    L +  
Sbjct: 194 NEIAVDLEHHSYRSFQGVT----------CLMQISTVDTD-YLIDTLILRSELHQLNEIF 242

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
              T++ V H + F+    ++   + +       T   A+    P  SL       
Sbjct: 243 TKPTILKVFHGADFDIQWLQR--DLSLYVVNMFDTHQAAKQLNFPYLSLAFLLKKY 296


>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
 gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
          Length = 379

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 66/272 (24%), Gaps = 47/272 (17%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            L +D E     T                   + L   +   E   +         P  L
Sbjct: 24  ILAVDTEFLREKTYF---------------PKLCLVQVSTGSEIAAIDPLLIDDLTP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L +  ++ + H    +  +      +D        T V A   G+            
Sbjct: 67  KELLENPEIVKILHACSQDLEVLL--EKMDCACAPVFDTQVAAAFLGMRQ---------- 114

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                        L+  F    +         +      +    Y + DV     ++ ++
Sbjct: 115 -------QVSYAGLVENFANVKLAKAESLTDWSKRPLDKEQL-VYAEDDVRYLPAIYNQM 166

Query: 178 IPLSDGERDLWLL----DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
           +        L  L    DQ  N   YR D        +      ++      ++      
Sbjct: 167 VEKLIKLDRLSWLKPEMDQHTNIDQYRRDPYQAYLRLKRSGSLTRRQLAIAREVCAWREE 226

Query: 234 SSRQTYALRMY-LFLITGIDLVDMSEGTLKSI 264
            + +    R + L     I++      T   +
Sbjct: 227 IAAKRDVPRKWVLSDELIIEICRRVPTTSDRL 258


>gi|262212147|gb|ACY35690.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y    +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGADDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
 gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
          Length = 233

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 36/149 (24%), Gaps = 34/149 (22%)

Query: 4   LFIDIETRSPQP-----------------------LPKVGVWAYAEQAVITLCAYAWDDE 40
           L  D+ET S  P                       L   GV    + A I         E
Sbjct: 18  LSFDLETTSANPREARIVTSALVRIDGSSMTATETLADPGVDIPEQAARIHGIT----TE 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLR--DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
             +   R     +   +    +  DE +  V  N+ ++  + +   G    +       +
Sbjct: 74  KARAEGRPHDDVLQETVAAIKQAWDEGLTLVVFNAPYDLSVLRALTGDFTVTGPVFDPLL 133

Query: 99  LARTNGL-----PSSLKNACLALNFSEHL 122
           + R           +L             
Sbjct: 134 IDRAMDRYRKGGKRNLGALSEFYGVRLDN 162


>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 34/149 (22%)

Query: 2   SKLFIDIETRS---------PQPLPKVGVWAYAEQA---VITLC----------AYAWDD 39
            ++ +D ET            + +   G+     Q     + L           A A   
Sbjct: 4   RQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPERDIPAEATAV-- 61

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF-KKTLGIDIP----SKR 92
                 D      + +D+ Q + D  +    + HN+ F+      +   + +P       
Sbjct: 62  -HGITLDDLADKPVFADVAQQIFDFLKGAELIIHNAKFDVGFLNAEFARVGLPNIDSVCT 120

Query: 93  WICTSVLA--RTNGLPSSLKNACLALNFS 119
            + T  +A  R  G  +SL   C  L   
Sbjct: 121 VVDTLEMARKRYPGQKNSLDALCTRLGVD 149


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 481 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 538

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 539 INTEYGKHGLNFLAKKYGVE 558


>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
 gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 30/148 (20%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G         +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVKIEGD-ELLTQSLYLIFDPRKDSSPQAEAIHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARTN--GLPSSLKNACLALNFSEHLT 123
             AR    G  + L +    +  +    
Sbjct: 131 EGARRLWRGDSAKLDHCLAKIGLARTGY 158


>gi|262212347|gb|ACY35790.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 14/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G+  V ADL+GIE R+L+          A  +                 DK+
Sbjct: 13  RRLFMATPGQVTVGADLSGIELRMLSHY-------LARYDTYFGDNLLNGDIHQLNADKI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L       K     E + +A      
Sbjct: 66  GTA-RKLVKTVTYAFLYGAGNEKI---GYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSD 121

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                           + G  
Sbjct: 122 LLSAVKSAANRGFVKGIDGRK 142


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
 gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
          Length = 209

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     +   IT  AY+        +DDE +++     +  +
Sbjct: 4   FVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDVL 63

Query: 54  PSDLLQYLRD---ETVMC----VAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L +   E  +     VAHN+ F+  + +       I  P   + CT  L+R  
Sbjct: 64  HEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 124 WPDLVNHKLNTMAAYIGVE 142


>gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 48/188 (25%), Gaps = 31/188 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTLEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++         EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQL------EYALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLL 190
            E     L
Sbjct: 169 REGRTSWL 176


>gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
 gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
          Length = 242

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 43/163 (26%), Gaps = 51/163 (31%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    P          E   + L                       A+   
Sbjct: 1   MREIVLDTETTGFDPFSG---DRIVEIGAVELFNHMPTGKTYHEYINPERSMPHEAFGVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETV-MCVA--------------HNSLFERILFKK 82
              P    D  E    P      LRD+ V   V               HN+ F+      
Sbjct: 58  GIGP----DLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFVQDSKLVIHNASFDMKFLNA 113

Query: 83  TLGI----DIPSKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
            L       +P  + I T  +A  R  G P++L   C      
Sbjct: 114 ELDWMGLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQID 156


>gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|330252678|gb|AEC07772.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 342

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 58/240 (24%), Gaps = 43/240 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L + G         I   A++     + L D  E   +        L 
Sbjct: 58  IGFDCE---GVDLCRHGKLC------IMQIAFS---NAIYLVDVIEGGEVIMKACKPALE 105

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKN------- 111
              +  V H+   +        GI +     + T +         G    L +       
Sbjct: 106 SNYITKVIHDCKRDSEALYFQFGIRLH--NVVDTQIAYSLIEEQEGRRRPLDDYISFVSL 163

Query: 112 AC--LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCK 164
                         +    K  +    +       Y        RA       L   Y K
Sbjct: 164 LADPRYCG---ISYEE---KEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHK 217

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +  +     L         L+       +     D   V  + + +  E + L+E+I
Sbjct: 218 MMGKLNQRSLWHLA----VRGALYCRCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEI 273


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET    PL         E   + +                       A+A  
Sbjct: 1   MREIVLDTETTGLDPLRG---DRLVEIGCVEMFNRMPTGQTFHRYINPERDMPQEAFAV- 56

Query: 39  DEPVKLWDRTEQSAM----PSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
                  D      +      + L+++ D     V HN+ F+         +     I  
Sbjct: 57  --HGLSSDFLADKPLFAHVVDEFLEFIGDA--PLVIHNASFDISFINAELDRLKRQAIGR 112

Query: 91  KRWICTSVLARTNGLPSS--LKNACLALNFS 119
            R + T +LAR      S  L + C      
Sbjct: 113 DRLVDTLLLARRKHPGVSNRLDDLCSRYAID 143


>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
 gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
          Length = 403

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 45/202 (22%), Gaps = 47/202 (23%)

Query: 8   IETRSP----QPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQS----------- 51
           IET             G    A  A   +   Y+       L     +            
Sbjct: 20  IETWPELSAAVDAFARGTGPVAMDAERASGYRYS---GRAYLVQLRREGAGTALIDPVAC 76

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLK 110
               +L + L D  +  V H +  +     +   +    +R   T + AR  G     L 
Sbjct: 77  PDLGELDRVLADAEI--VLHAATQDLPCLAE---LGFRPRRLFDTELAARLLGYERVGLA 131

Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L           G +      +                + W     Y   DVE 
Sbjct: 132 TMVEVVLGLRLEK-----GHSAADWSRRPL-------------PEDW---LRYAALDVEV 170

Query: 170 TRELFKRLIPLSDGERDLWLLD 191
             EL   L         L    
Sbjct: 171 LVELRDALYEQLVESGKLEWAL 192


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 42/156 (26%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAY--------AEQAVITLCA 34
           M ++F+D ET    P                  +       Y        A    +    
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGIT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSK-- 91
             +  +  +  D      +  + L +++D     + HN+ F+       LG I+ P    
Sbjct: 61  LEFLQDKPRFAD------VVGEFLDFVQDSE--LIIHNAPFDVGFLNAELGRIEKPGIES 112

Query: 92  ---RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
                I T  +A+    G  ++L   C         
Sbjct: 113 VASGIIDTLKMAKEMRPGQRNNLDALCRHFGIDNSK 148


>gi|229472267|gb|ACQ72648.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     E +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSAKAKKKGKEIREAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E    + + G  
Sbjct: 117 IDGLDKPLAAIKKASERGFIEAIDGRK 143


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWD----------- 46
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 123 VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 182

Query: 47  -RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 183 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 232


>gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705]
 gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705]
 gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
 gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 235

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 31/146 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            + +D+ET         + ++G     E  ++       +                   +
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93

Query: 45  WDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW----IC 95
            D      +    + +L            V HN  F+           I    +      
Sbjct: 94  ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTR-HIAGCGFACADYD 152

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R          L +  +    
Sbjct: 153 TMQISRALFPAQRHHRLADLIVRFGI 178


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                    L                     E  A I       +        +  + + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVELTQHHRAIYDTESTAYIFIKMVQQMKELGVTNHKDINQKL 600


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
 gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
          Length = 392

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
            +   + D              + +E V+ V H +  +  +     GI         T V
Sbjct: 47  PDEAVVVDTLAPGIDLKPFFDLMANENVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQV 104

Query: 99  LARTNGLPSS 108
            A   G   S
Sbjct: 105 AAMVLGYGDS 114


>gi|294998863|gb|ADF58177.1| DNA polymerase [Pseudomonas phage JG004]
          Length = 904

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 60/224 (26%), Gaps = 68/224 (30%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVM-CVAHN-SLFERILFKKTLGIDI---------- 88
           PV+            +   Y+    +   VAHN   F+ +  K    +D           
Sbjct: 105 PVEYIHLP-----LKEFKNYVLKRKIKRVVAHNMINFDLMSMKLVEDMDFTIGVEHRDGG 159

Query: 89  -----------PSKRWICTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIA 133
                          +  T V+++T         SL              K++  K L  
Sbjct: 160 LTTWSADTWMGKQVVFDDTLVISKTCNPDLFGGHSLDKLSRRAGGDT---KIDFRKHL-- 214

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------- 183
                              +        YC  DV+A   ++  L    D           
Sbjct: 215 -------------APDVRFLDFAADMLYYCIYDVKANTAVWHWLQDHEDYQLSDRDNYIK 261

Query: 184 --------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                   E+ +  +      RG+ ++++L  K  + +  + ++
Sbjct: 262 NWLSPIQLEKKVAEIITYQEHRGFVLNVELCEKAVKDLDAKMEE 305


>gi|229472521|gb|ACQ72775.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|229472443|gb|ACQ72736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|225561715|gb|EEH09995.1| DNA polymerase gamma [Ajellomyces capsulatus G186AR]
          Length = 1146

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 66/295 (22%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          K+  T 
Sbjct: 699 GSELKAMVRAPPGYVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKSAGTD 757

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +               
Sbjct: 758 LHSKTANILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQE------------- 804

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                    +    +   + K   T  +++         G      +  E FA   +   
Sbjct: 805 --------TKRVAAKLYEETKGTRTNRKILSDNPF-WRGGTESFVFNKLEEFAEQERPRT 855

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +    +              +                                      
Sbjct: 856 PVLGAGITEALMRRFINKGSFMTSR----------------------------------- 880

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     +   +   
Sbjct: 881 -INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVKEHDKYRAA 934


>gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 378

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 48/195 (24%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D E      +     +       ++L   ++  E   + D        S + + +
Sbjct: 6   KFIAVDTE-----FIRNNLTYY----PRLSLIQISY-GEKSFIVDVLVPGIDLSLIKKIM 55

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  +  V H+   +       L           T V A                     
Sbjct: 56  LNREITKVFHSCRQDIESLLTVL--KCVPTPIFDTQVAAMFC-----------HYYHDFI 102

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    +A     + +S       +           Y   DV    +L + L   
Sbjct: 103 GYSKVVEQYQGVALDKIKAKNSDWLKRPLSEDQLD------YAVNDVIHLYDLHQILCNK 156

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 157 LEENNRMGWFQEEME 171


>gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
          Length = 1387

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 14/114 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID+E             +Y       L   +  ++   L D          L     +
Sbjct: 482 VAIDLE--------HHSFHSYRG-FTCLL-QLSTREKD-YLIDPFPLFEHLHVLNAITAN 530

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
             ++ + H +  + I  ++     +       T V AR   +P    +    L+
Sbjct: 531 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGG-ASLANLLH 581


>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
 gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
          Length = 383

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 21/165 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   A  D+   + D            + + D +V+ V H +  +  +    LG  + 
Sbjct: 39  LCLIQIAGPDDE-CIVDPMADGIDLQPFFELMADTSVVKVFHAARQDVEIV-YHLG-GLV 95

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            K    T V A   G      +                  AL++R   G ID        
Sbjct: 96  PKPLFDTQVAAMVCGYG---DSVAYN--------------ALVSRITGGVIDKSSRFTDW 138

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           A      +   +Y   DV   R++++ L    + +     +D+ +
Sbjct: 139 ARRPLTTKQL-DYALADVTHLRDVYQSLKADLEKKNRKHWVDEEM 182


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 40/145 (27%)

Query: 5   FIDIETRSP----QPLPKVGVWAYAEQA-------------------VITLCAYA-WDDE 40
           F+DIET         + ++G+   A                       +T  +    + +
Sbjct: 13  FVDIETTGSHFDRDRITEIGIKTLANDGIQVWERLINPQTFIPQNIQRLTGISPQMVEGQ 72

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
           P           +  +L Q L     + VAHN+ F+    K   K +GID   K  +CT 
Sbjct: 73  PSF-------DQVAKELKQELE--GKIFVAHNARFDYGFIKASFKRVGIDFKPK-VLCTV 122

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
            L+R         +L     A    
Sbjct: 123 KLSRLLFPEQPRHNLDTIINAHGLQ 147


>gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101]
 gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens SM101]
          Length = 204

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 31/122 (25%), Gaps = 27/122 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQA-----VITL--CAYAWDD-----EPVKLWDRT 48
           M  LF D ET   +P     +                    +  D+     E +  +   
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVNTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 49  EQSAMPSDLLQYLRD----------ETVMCVAHNSLFERILFKKT---LGIDIPSKRWIC 95
           +   +   +  Y  D          E    + HN  F+    K     LG         C
Sbjct: 61  KLYELSEGM--YFEDLYADFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 96  TS 97
           T 
Sbjct: 119 TM 120


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
           [uncultured marine bacterium EB000_55B11]
 gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 230

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQ---------------------AVITLCA 34
           M ++  D ET    P     + ++G     +                        +   +
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPERDMPPGAFEVHGLS 60

Query: 35  YAW-DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
             +  D PV        S +  D + ++ D     +AHN+ F+        K      +P
Sbjct: 61  IDFLKDFPVF-------SNIARDFIDFVGDA--TLIAHNAKFDMKFINAELKNANLPQVP 111

Query: 90  SKRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
             + + T  +AR    G  +SL   C   N     
Sbjct: 112 LNQSLDTLEIARKKFPGAQNSLDALCRRFNIDNSS 146


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|262342199|gb|ACY54610.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y    +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGADDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|239613015|gb|EEQ90002.1| DNA polymerase gamma [Ajellomyces dermatitidis ER-3]
 gi|327356950|gb|EGE85807.1| DNA polymerase gamma [Ajellomyces dermatitidis ATCC 18188]
          Length = 1146

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 8/222 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          KA  T 
Sbjct: 700 GSELKAMVTAPPGYVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKAAGTD 758

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +      +   +++ +
Sbjct: 759 LHSKTAKILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEHETKQVAAKLYKETK 818

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              ++   + D        +  +    E   +  R        L   +TE         G
Sbjct: 819 GVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQER---PRTPVLGAGITEALMRRFINKG 875

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           S    R+    +     +   + I +    R    D +   +
Sbjct: 876 SFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAIT 917


>gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 235

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 31/146 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            + +D+ET         + ++G     E  ++       +                   +
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93

Query: 45  WDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW----IC 95
            D      +    + +L            V HN  F+           I    +      
Sbjct: 94  ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTR-HIAGCGFACADYD 152

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R          L +  +    
Sbjct: 153 TMQISRALFPAQRHHRLADLIVRFGI 178


>gi|32128447|ref|NP_858982.1| exonuclease related to epsilon chain of DNA polymerase [Xanthomonas
           phage Xp10]
 gi|148727212|ref|YP_001285704.1| p35 [Xanthomonas phage Xop411]
 gi|31788510|gb|AAP58702.1| 34L [Xanthomonas phage Xp10]
 gi|116583512|gb|ABK00182.1| p35 [Xanthomonas phage Xop411]
          Length = 245

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 25/180 (13%)

Query: 22  WAYAEQAVITLCAYAWDD-EPVKLWDR------TEQSAMPSDLLQYLRDETVMCVAHNSL 74
               +   I      W     V   D       T+   + + L + L +  V  VAHN  
Sbjct: 17  DDIVQDWNILSYCAKWHGVNTVLYDDLREQSNPTKDKRLCTGLAKVLTEADVA-VAHNGK 75

Query: 75  -FE-RILFKKTLGIDIPSK---RWICTSVLARTNGLP--SSLKNACLALNFSEHLTKMEE 127
            F+ R +  +     +P     R + T + +R         L                  
Sbjct: 76  KFDIRKIRARLSMNKLPPIPDTRIVDTLIESRKCFAHTSHKLAYLSTHFGDD-------- 127

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
              L             +   +  ++ AW+   +Y   DV A   ++  L     G ++L
Sbjct: 128 --GLRKLDHGKFAGKALWRECQRGNLAAWEEMKKYNVVDVLAMESMYSELRGWFQGAQNL 185


>gi|18400976|ref|NP_565612.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|18491139|gb|AAL69538.1| At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|20197359|gb|AAC42241.2| expressed protein [Arabidopsis thaliana]
 gi|21554875|gb|AAM63716.1| unknown [Arabidopsis thaliana]
 gi|330252677|gb|AEC07771.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 341

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 58/240 (24%), Gaps = 43/240 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L + G         I   A++     + L D  E   +        L 
Sbjct: 58  IGFDCE---GVDLCRHGKLC------IMQIAFS---NAIYLVDVIEGGEVIMKACKPALE 105

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKN------- 111
              +  V H+   +        GI +     + T +         G    L +       
Sbjct: 106 SNYITKVIHDCKRDSEALYFQFGIRLH--NVVDTQIAYSLIEEQEGRRRPLDDYISFVSL 163

Query: 112 AC--LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCK 164
                         +    K  +    +       Y        RA       L   Y K
Sbjct: 164 LADPRYCG---ISYEE---KEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHK 217

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
              +  +     L         L+       +     D   V  + + +  E + L+E+I
Sbjct: 218 MMGKLNQRSLWHLA----VRGALYCRCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEI 273


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------RTEQSAMP 54
           +F+D+ET     +             I     +       P +              AM 
Sbjct: 16  VFVDLETTGGSSVEHRITEIGV--VEIGPLGVSTWTSLVNPGQSIPPFIQQLTGISEAMV 73

Query: 55  SD------LLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
            D      L   L +  +  + VAHN+ F+R   +      G+       +CT  L+R  
Sbjct: 74  RDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPRESRHGLDALIERHGL 150


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 42/156 (26%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAY--------AEQAVITLCA 34
           M ++F+D ET    P                  +       Y        A    +    
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGIT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSK-- 91
             +  +  +  D      +  + L +++D     + HN+ F+       LG I+ P    
Sbjct: 61  LEFLQDKPRFAD------VVGEFLDFVQDSE--LIIHNAPFDVGFLNAELGRIEKPGIES 112

Query: 92  ---RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
                I T  +A+    G  ++L   C         
Sbjct: 113 VASGIIDTLKMAKEMRPGQRNNLDALCRHFGIDNSK 148


>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 243

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS------KRWICTSVLAR--TN 103
            +  ++L+YL+   +  + HN+ F+     K L +          +    T V+A+    
Sbjct: 73  EVVDEILEYLQGAEI--IIHNAAFDVGFLNKELELTGRPAFTSYVESVTDTLVMAKEMYP 130

Query: 104 GLPSSLKNACLALNFS 119
           G  +SL   C  L   
Sbjct: 131 GKRNSLDALCDRLGVD 146


>gi|162148736|ref|YP_001603197.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 41/152 (26%)

Query: 1   MSK-LFIDIETRSPQP-----------LPKVGVWAYAEQAVIT---------------LC 33
           M + +  D ET    P           L  VG         +                  
Sbjct: 1   MKRAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPDRDIPEEASRVHGF 60

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
             A  +   +         +  D L ++  +    +AHN+ F+        K+     + 
Sbjct: 61  TLADLEGKPRFH------EIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALS 112

Query: 90  SKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
             R + T  +A  R  GLP+SL   C   +  
Sbjct: 113 LDRMVDTLDIARDRYPGLPNSLDALCRRFSID 144


>gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
 gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
          Length = 388

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   +       +  R E   +    L  +  +  + V H +  +  +F + +G  
Sbjct: 42  PELCLIQASAPGVEGLIDPRAEDLDI-RPFLDLIASDRQLKVFHAARQDIEIFNRLIGH- 99

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
            P      T V A   G   S                      LI R  +  ID      
Sbjct: 100 -PPGPIFDTQVAAMALGFGDS------------ISY-----DNLIQRVLRKHIDKSSQF- 140

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           T        Q    Y   DV   R+ + ++    +    +  + + +
Sbjct: 141 TDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVREEM 187


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 16  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 75

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 76  EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 125


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 26/144 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYA-----EQAVIT---LCAYAWDDEP-----VKLWDRT 48
               +D ET    P     +   A     E   I      +   + +           + 
Sbjct: 11  KFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPKKPIPFQAYKIHKI 70

Query: 49  EQSAM-----PSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
               +       ++L +     E  + VAHN+ F+           G++ P    I T  
Sbjct: 71  SDEMVKDAPTIEEVLPHFSKYVENTVFVAHNAPFDFKFIDYFYKKTGMNCPLIAVIDTLK 130

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+R         SL +     N  
Sbjct: 131 LSRRIIPGLKSYSLDSLIQHFNIK 154


>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 224

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITLCAY------------------AWDDE 40
             +  D ET    P   +  +G     E   +   +                    +D+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS 97
             +  D      + + + ++        VAHN+ F+    ++      +D+  +   CT 
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARTN--GLPSSLKN-ACL----ALNFSEHLTKM 125
             AR    G  + L +                 + 
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGLARTGHRHGALED 165


>gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
 gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
          Length = 385

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 104/378 (27%), Gaps = 54/378 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T                   + L    +  + V L D T      S  +
Sbjct: 36  VALDTEFVRTRTFY---------------PKLGLIQL-YAGDEVALIDPTTIQDF-SPFI 78

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLAL 116
             L DE V  V H S  +  +F+         +    T V+A   G              
Sbjct: 79  ALLADERVTKVLHASGEDLEVFQHYFQQ--LPQPMCDTQVVANFLGFANSPGFATLVKHY 136

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKR---DVEATR 171
                  ++++G +      +   D+               +Q       +         
Sbjct: 137 F----QIEIDKGASCTDWLARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVEN 192

Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
           E    L   +   RD       I    ++++   +++L+ L     ++     + L   +
Sbjct: 193 ECEFLLNKRAQYARDPEEAYFAI-PNAWKLNSLELMRLKLLAKWRMQEAMRRDLTLNFVV 251

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290
                        L+ +   D        L  + LS + +    K L+            
Sbjct: 252 H---------AENLWTVAKHDPKST--SALLDLGLSTAEVRIHGKKLLQLLEQVKRIDPK 300

Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350
               + + +  D R      +  A +T +       P+NLP++  +     +++   +  
Sbjct: 301 DYPPMIQRLMDDPR------YKAALKTLQQELTKITPENLPKELIAGRRGLESLMKWHWR 354

Query: 351 ETIADPLGLASDCVRSCI 368
           +   +      +  R   
Sbjct: 355 KEADNEPPELLNGWRRPF 372


>gi|229472537|gb|ACQ72783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+ + AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALLTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +                       
Sbjct: 66  IGISRRLVKTVTYAFLYGAGNKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544
                           T  + +++A+     G+ +L   +                    
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAE--------------- 132

Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604
                         +I L   RR                            K    ++Q 
Sbjct: 133 ------------SGYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 ISRDILCEGM------KNATKNGYDIVLTVHDE 631
            +  +    M          +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|220932957|ref|YP_002509865.1| hypothetical protein Hore_21250 [Halothermothrix orenii H 168]
 gi|219994267|gb|ACL70870.1| hypothetical protein Hore_21250 [Halothermothrix orenii H 168]
          Length = 306

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPVKLWDRTEQSAMPSDLLQY 60
             + ID E    +       +   E   +T C     +++     +  E      +++  
Sbjct: 113 KVMGIDTE--YLKSNLDCIQYVTMEGFEVTSCGMIFTNNDLAHSVNPEEGIDYLREVIYD 170

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTS 97
                ++ V HN   +  + ++  G  IP    +  T 
Sbjct: 171 FE-PEII-VGHNFNSDIKVMERAYGSPIPELYNFDDTM 206


>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
 gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
          Length = 243

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS------KRWICTSVLAR--TN 103
            +  ++L+YL+   +  + HN+ F+     K L +          +    T V+A+    
Sbjct: 73  EVVDEILEYLQGAEI--IIHNAAFDVGFLNKELELTGRPAFTSYVESVTDTLVMAKEMYP 130

Query: 104 GLPSSLKNACLALNFS 119
           G  +SL   C  L   
Sbjct: 131 GKRNSLDALCDRLGVD 146


>gi|229472421|gb|ACQ72725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|229472415|gb|ACQ72722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 123 VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 182

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 183 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 232


>gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 381

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPRTEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++          Y   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLD------YALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRSSWLSEEM 180


>gi|262342247|gb|ACY54634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|229472535|gb|ACQ72782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 39/144 (27%), Gaps = 9/144 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
              D  R    A+ G  +V ADLAGIE R+LA          A  +G            +
Sbjct: 7   PHGDEFRKLFRATPGMVMVGADLAGIELRMLAHY-------LARWDGGRYGDVLINGDIH 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                     R + K +  A  Y  G +    +       D  +        +  +    
Sbjct: 60  QENADKIGISRRLVKTVTYAFLYGAGDQKIGLSYDQSLSADKAKKKGQEIRQAHMDAIPG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGT 501
            +      +           + G 
Sbjct: 120 LQDLVEATKK-AANRGYIRAIDGR 142


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 38/147 (25%)

Query: 7   DIE-TRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVK--------------------- 43
           D+E T     +   G  A  +   I    A   +D  +                      
Sbjct: 484 DLEGTYVVFDIETTGFSAVTD--RIIEIGAVKVEDGKITDKFSTFVNPKRPIPFRITELT 541

Query: 44  ------LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSK-RWIC 95
                 + D  +   +    ++++ D   + VAHN+ F+    +       I +   ++ 
Sbjct: 542 SITDEMVIDSPDIETILPQFIEFIGDA--VLVAHNASFDVGFIEQNCKRQKIEADFTYVD 599

Query: 96  TSVLARTNGLPSS---LKNACLALNFS 119
           T  LAR      +   L     ALN S
Sbjct: 600 TVALARVLLPALNRFKLDTVAKALNIS 626


>gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 212

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTLEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       ++         EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKSVHIDKSSRFTDWSRRPLSDKQL------EYALADVTHLRDVYLSLKAELD 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRTSWLSEEM 180


>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 242

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 42/153 (27%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-------QAV-ITLCA 34
           M ++ +D ET   +P                  L    +  Y          A  +   +
Sbjct: 1   MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPERDIDPDAERVHGIS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIP---- 89
             +  +  +         +   L           + HN+ F+          I I     
Sbjct: 61  LDFLADKPRF--AAVGPEIADFLRDA------ELIIHNAPFDVGFLNAEFDRIGIERVST 112

Query: 90  -SKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
                I T V+AR    G  +SL   C      
Sbjct: 113 LCASVIDTLVMARDQFPGKRNSLDALCDRFEID 145


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET              +    I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETTG---------NQASRDDRIIQFAACFVESGKRLETYATFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVRDAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMNRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
 gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
          Length = 242

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 32/148 (21%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI------ 94
            +   D+ + + + +++  Y++      + HN+ F+           +    +       
Sbjct: 61  NEFVADKPKFAEIVAEIRDYVQ--GAEAIIHNAAFDLGFLDMEF-QRLKLPSFREHLAGH 117

Query: 95  -CTSVLARTN--GLPSSLKNACLALNFS 119
             T + AR    G  +SL   C  L  S
Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVS 145


>gi|262212165|gb|ACY35699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V AD AGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADPAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIRALDGRK 143


>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
          Length = 295

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 40/159 (25%), Gaps = 55/159 (34%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
            + ID ET    PL           + I           +K     E   +  ++  +  
Sbjct: 124 YVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFRS 167

Query: 61  -------------LRD------------------ETVMCVAHNSLFERILFKKTL---GI 86
                        L D                       VAHN+ F+       L    I
Sbjct: 168 NISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNI 227

Query: 87  DIPS-KRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           ++    R I T  LAR +       L      LN   + 
Sbjct: 228 ELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNS 266


>gi|229472429|gb|ACQ72729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGCSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
 gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
          Length = 235

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 34/144 (23%), Gaps = 40/144 (27%)

Query: 3   KLFIDIETRSPQP----LPKVGV-----WAYAEQAV---------------ITLCAYAWD 38
            + +D+ET    P    + ++G          +Q                 +T       
Sbjct: 34  YVALDLETTGFYPNRCAITEIGAVRVRGGRVVDQFQQLINPLCPIPRQITALTGIT---- 89

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW 93
                + D      +    + +L D          V HN  F+           I    +
Sbjct: 90  --DAMVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTR-HIAGCGF 146

Query: 94  ----ICTSVLARTNGLPSSLKNAC 113
                 T  ++R      S     
Sbjct: 147 ACADYDTMQISRALFPKQSHHRLA 170


>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
          Length = 500

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  +E   + D  E  +    L +   D  ++ V H +  +    +K  G+ +   
Sbjct: 326 LMQISTREED-FIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFGLYV--V 382

Query: 92  RWICTSVLARTNGLPS-SLKNACLAL 116
               T   AR   L   SL +     
Sbjct: 383 NMFDTHHAARCLNLGRNSLDHLLKVY 408


>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
           CFBP2957]
 gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 242

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 30/147 (20%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDIPSKRWI 94
            +   D+ + + + +++  Y++      + HN+ F+        + LG           I
Sbjct: 61  NEFVADKPKFAEVVAEIRDYVQ--GAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHI 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T + AR    G  +SL   C  L  S
Sbjct: 119 DTLLEARRMFPGKRNSLDALCDRLGVS 145


>gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27]
 gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27]
          Length = 209

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     +   IT  AY+        +DDE +++     +  +
Sbjct: 4   FVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDVL 63

Query: 54  PSDLLQYLRD---ETVMC----VAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L +   E  +     VAHN+ F+  + +       I  P   + CT  L+R  
Sbjct: 64  HEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 124 WPDLVNHKLNTMAAYIGVE 142


>gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
 gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
          Length = 381

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 12/229 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L     D E + L D T    M    ++ L+D +V+ V H    +  +F+   G  
Sbjct: 47  PQLGLIQM-LDGENLSLIDPTVLDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 102

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S   A   L   +   ++++ ++      +   D      
Sbjct: 103 CTPFPMVDTQIMAAFLGYGLSTGFAA--LVQDQLQVELDKSESRTDWLARPLSD----KQ 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
                   + L   Y K     T+  +     L + E  +    +  N     +D+    
Sbjct: 157 LEYAAADVFYLLPMYEKLVERVTQAGWWD-AALQESELQVAKRTKVSNPELAYLDIKGAW 215

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
           +L+       K L             +          L +    +    
Sbjct: 216 QLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|47498064|ref|NP_998833.1| exosome component 10 [Xenopus (Silurana) tropicalis]
 gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
          Length = 883

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 24/151 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +   E   + D  E  +    L +   + +++ V H +  +    +K  G+ I   
Sbjct: 324 LMQISTRTED-YIIDVLELRSNMYILNESFTNPSIIKVLHGADSDIEWLQKDFGLYI--V 380

Query: 92  RWICTSVLARTNGLP-SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   AR   L   SL +                    +  +C    D         
Sbjct: 381 NMFDTHQAARILNLGRHSLDHL-------------------LRLYCNVESDKRYQLADWR 421

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 +   EY + D      ++ ++    
Sbjct: 422 IRPLP-EEMIEYARADTHYLLFIYDKMRTAL 451


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 57/211 (27%), Gaps = 49/211 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL----WDRTEQSAMPS-- 55
             +  DIET S            A    I   A    +    +         +  +    
Sbjct: 410 RYVVFDIETTSLS----------AYHGEIIEFAATIIENKAVVDKVDIFIKSKEKLSHFT 459

Query: 56  ----------------DLLQYLR------DETVMCVAHNSLFERILFKKTL---GIDIPS 90
                           +L + L+      +  V  VAHN+ F+     +      +  P 
Sbjct: 460 TRLTSITNEMLDQKGIELKEALQKIYDVLNNNVA-VAHNANFDYNFLIEKFDQNNMQAPK 518

Query: 91  KRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             +I + V++R         +L   C  L+ +    K            +   D+     
Sbjct: 519 CTFIDSLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAH----RALYDTEVLADAWIEAT 574

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            +   ++    F E  +   +A    +  L 
Sbjct: 575 LKLKDIKQISNFQELSEYKSDALFSKYFSLY 605


>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
 gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
          Length = 953

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 27/119 (22%)

Query: 1   MSKLFIDIETRS---PQPLPKVGVWAYAEQAVIT----LC--------AY-----AWDDE 40
           M    +D+ET        + +VG+    +   I               A+       D +
Sbjct: 1   MKFAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
            V   D  E   +   L+ YL D   + VAHN  F+     + L   G      R + T
Sbjct: 61  MVA--DAPELDEVLMQLIPYLEDA--VLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDT 115


>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
 gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
          Length = 382

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           +   + D              + +E V+ V H +  +  +     GI         T V 
Sbjct: 48  DEAVVVDTLAPGIDLKPFFDLMANENVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 106 AMVLGYGDS 114


>gi|15790277|ref|NP_280101.1| hypothetical protein VNG1213C [Halobacterium sp. NRC-1]
 gi|10580745|gb|AAG19581.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 326

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 18/169 (10%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           F DIET        V          +T  +     +   L      S + ++ LQ L D 
Sbjct: 164 FFDIETTGLDQHSSV----------VTTVSVHRGGDTTTLV---RGSDLTAERLQALLDA 210

Query: 65  TVMCVA-HNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
               VA  N   F+    +    + +     +      R   L   LK     L      
Sbjct: 211 --PMVASFNGKRFDAPFLEHHFDLSLD-SPHLDLMYPCRRLDLTGGLKQVERDLGVDRAE 267

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               +G+  +  + + + D+      R      +         D  A R
Sbjct: 268 VDDVDGREAVRLWRRYAEDNDEAALDRLVTYNQYDTQNLQAILDAVAER 316


>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M +L +D ET         G     E   + L                       A A  
Sbjct: 1   MRQLILDTETTGLN---ARGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKR---- 92
               +   D+ + + +      +++      + HN+ F+      +   + +P       
Sbjct: 58  GLTTEFLSDKPKFAEIIDQFRDFIQGAD--LIIHNAPFDIGFLDAEFALLGLPPVSTHCG 115

Query: 93  -WICTSVLARTN--GLPSSLKNACLALNFS 119
             I T   A+    G  +SL   C     S
Sbjct: 116 EIIDTLAQAKQMFPGKRNSLDALCDRFGIS 145


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 23/141 (16%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD------EPVKLWDRT--- 48
           + +  D+ET         + ++          +   +   +          K+   T   
Sbjct: 57  NYVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEM 116

Query: 49  -EQSAMPSDLLQYLRD--ETVMCVAHNSL-FERILFKKTLGIDIP---SKRWICTSVLAR 101
            +       +L    D  +  + + HN   F+ +   +             +I T  +AR
Sbjct: 117 VQSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMAR 176

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L +       S
Sbjct: 177 ALLPGLSRHRLTDLADYFKIS 197


>gi|261189615|ref|XP_002621218.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
 gi|239591454|gb|EEQ74035.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
          Length = 1126

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 8/222 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          KA  T 
Sbjct: 680 GSELKAMVTAPPGYVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKAAGTD 738

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +      +   +++ +
Sbjct: 739 LHSKTAKILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEHETKQVAAKLYKETK 798

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              ++   + D        +  +    E   +  R        L   +TE         G
Sbjct: 799 GVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQER---PRTPVLGAGITEALMRRFINKG 855

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           S    R+    +     +   + I +    R    D +   +
Sbjct: 856 SFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAIT 897


>gi|229472169|gb|ACQ72599.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472187|gb|ACQ72608.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472201|gb|ACQ72615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472299|gb|ACQ72664.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472313|gb|ACQ72671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472317|gb|ACQ72673.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472413|gb|ACQ72721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|193211682|ref|YP_001997635.1| DNA polymerase B region [Chlorobaculum parvum NCIB 8327]
 gi|193085159|gb|ACF10435.1| DNA polymerase B region [Chlorobaculum parvum NCIB 8327]
          Length = 797

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 59/219 (26%), Gaps = 64/219 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQ 59
           +L +DIET       + G     E   I + + + D+   +    ++      +  +L+ 
Sbjct: 157 RLQLDIETYYQPDKKRKGKG-IGEDP-IIIVSLS-DNRSWEHVIHSKGRAEKDLLEELVH 213

Query: 60  YLRDETVMCV-AHNSL-FERILFKK---TLGI---------------------------- 86
            +R +    +  HN   F+    ++     G+                            
Sbjct: 214 IIRQKDPDVIEGHNIFGFDLPYLQRRCELNGVRFAIGRNGLVPRSYPATIRFAERSADFQ 273

Query: 87  --DIPSKRWICTSVLARTNG------LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
             DIP +  I T  LA+             LK                        F   
Sbjct: 274 FCDIPGRHVIDTYFLAQNYDTSKRTLPSYGLKAVAKFFG-----------------FASP 316

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +     Y    +      +    Y   DV  TREL   L
Sbjct: 317 NRTYVDYKDIASTWDDNPETLLAYALDDVRETRELAALL 355


>gi|229472405|gb|ACQ72717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 38/151 (25%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           + ++ +D ET               E   I L                       A+A  
Sbjct: 2   LREIVLDTETTG----TDAKTDRLIEIGGIELLNHIPTGREFHRYINPQRAVSQGAFAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-------DIPS 90
                 L D+   + +  D L +  D     V HN+ F+                  I  
Sbjct: 58  GLSDAFLADKPLFAEILPDFLDFCGDA--TFVIHNAAFDVGFLNAEYARLGETAPPPIEL 115

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
              + T  LAR     +  +L   C      
Sbjct: 116 SAVVDTLALARRKHPNAANNLDALCARYGID 146


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 56/180 (31%), Gaps = 29/180 (16%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLWDRTE----- 49
            + +DIET         + ++G     E   IT   +   D E   PV++ + T      
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVK-IENGQITDRFSTFVDPEGKIPVRISELTGIYQDM 448

Query: 50  QSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
               P  +   L       + + VAHN+ F+    KK     GI I    +I T  L+R 
Sbjct: 449 VDKAPKLIDAILEFERFASSSVLVAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRR 507

Query: 103 N---GLPSSLKNACLALN----FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
                    L      LN             E  A I       + +  Y   +  +   
Sbjct: 508 LLTDLSSYKLNKVAEFLNVELRHHHRADSDAETTAGIFISLLERLKARGYKWLKELNSIE 567


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 33/156 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWA-YAEQAVIT----------LCAYAWDDEPVKLW---D 46
           ++ + ID ET S              +   +             AY + +  V      D
Sbjct: 4   INFIAIDFETASNAQAAICEAGISIVKGGKVVETRSWLVRPEGNAYNYWNTRVHGITAKD 63

Query: 47  RTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
                  P    +++ YL D  ++ VAHN+ F+    ++     G+  P   + C+   A
Sbjct: 64  TAHAPEFPQVWNEIMTYLADCPIL-VAHNAGFDMGCIRRSLAFYGLKTPEITYYCSLRAA 122

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
           R               +F  +  +    K  I    
Sbjct: 123 R------------KIYDFECNKLEFLCQKFEIPYGQ 146


>gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 235

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 31/146 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            + +D+ET         + ++G     E  ++       +                   +
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93

Query: 45  WDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW----IC 95
            D      +    + +L            V HN  F+           I    +      
Sbjct: 94  ADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTR-HIAGCGFACADYD 152

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R          L +  +    
Sbjct: 153 TMQISRALFPAQRHHRLADLIVRFGI 178


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 25/144 (17%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEPVKLWD 46
             +  DIET         + ++G         I               +  ++      D
Sbjct: 479 KYVVFDIETTGFSPEKNKIIEIGAVKVIG-GEIVDRYSTFINPEVPIPFRIEELTSIRDD 537

Query: 47  RTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
               S     +L       +  + VAHN+ F+    K+    LG++      + T  LAR
Sbjct: 538 MVITSPTVDVILPQFMEFCKDCIMVAHNADFDMSFIKRNCALLGMECNPT-IVDTVALAR 596

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                 +   L     ALN S   
Sbjct: 597 VLLPQLNRFKLDTVAKALNISLDH 620


>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
 gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
          Length = 297

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 40/159 (25%), Gaps = 55/159 (34%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
            + ID ET    PL           + I           +K     E   +  ++  +  
Sbjct: 126 YVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFRS 169

Query: 61  -------------LRD------------------ETVMCVAHNSLFERILFKKTL---GI 86
                        L D                       VAHN+ F+       L    I
Sbjct: 170 NISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNI 229

Query: 87  DIPS-KRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           ++    R I T  LAR +       L      LN   + 
Sbjct: 230 ELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNS 268


>gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 209

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     +   IT  AY+        +DDE +++     +  +
Sbjct: 4   FVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDVL 63

Query: 54  PSDLLQYLRD---ETVMC----VAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L +   E  +     VAHN+ F+  + +       I  P   + CT  L+R  
Sbjct: 64  HEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 124 WPDLVNHKLNTMAAYIGVE 142


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----------------VKLWDRT---- 48
           ET     +   G+ A     +I L A                           + T    
Sbjct: 420 ETYVVFDVETTGLSA-MYDTIIELAAVKVKGGEIIDRFESFANPHHPLSATTINLTGITD 478

Query: 49  -------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                  E   +     ++++D+  + VAHN+ F+        + +G+       I T  
Sbjct: 479 DMVQNAPEVGDVLKQFSEWMQDD--ILVAHNASFDMGFLNIGFQRIGLGKAKNPVIDTLE 536

Query: 99  LARTNGLP---SSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           L R          L   C         +          G  L+            +    
Sbjct: 537 LGRLLFPSLKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLLVKMLKDAFEKGITFHDEL 596

Query: 150 ANHVQAWQLFG 160
             H      + 
Sbjct: 597 NEHSGTTDAYK 607


>gi|229472411|gb|ACQ72720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472513|gb|ACQ72771.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472523|gb|ACQ72776.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 305

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 44/154 (28%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAEQAV---------ITLC 33
           M ++ +D ET                       L    +  Y              +   
Sbjct: 62  MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYV-NPERDSDPGALAVHGL 120

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-- 90
              +  +  K  +      +   +           + HN+ F+      +   + +P   
Sbjct: 121 TTEFLSDKPKFAEVAH--QILDFVKDA------ELIIHNAPFDLGFLDAEFARLGLPPFT 172

Query: 91  ---KRWICTSVLARTN--GLPSSLKNACLALNFS 119
                 I T V A+    G  +SL   C     S
Sbjct: 173 EHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 206


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVITLCAYAWDDEPVKLW-------------- 45
           M  + ID ET + +      +     +   I        +E   L               
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIV-------EEKYFLIKPCEMRFQPMNIWI 53

Query: 46  ------DRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW 93
                 D   +   + +  ++  Y+  +  + +AHN+ F+  + +K      I  P   +
Sbjct: 54  HGIRPEDVENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEY 111

Query: 94  ICTSVLA--RTNGLP-SSLKNACLALNFS 119
            CT V+A      LP   L     AL+F 
Sbjct: 112 ACTVVMAKNYYKSLPNHKLGTVSEALDFE 140


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 375

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 26/183 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D  E   M   L   LRD++V+ V H    +  +F+   G  
Sbjct: 39  PRLGLIQL-FDGEHLSLIDPLEIDDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S                   G   + +   G         
Sbjct: 95  CLPTPMLDTQLMAAFLGHGIS------------------TGFGALVKEYVGVELDKGEAR 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----GERDLWLLDQTINDRGYRIDL 203
           T            +Y   DV   + L++ L+   +     E      +  +  R   +D 
Sbjct: 137 TNWLARPLTAKQLDYAAADVHYLKPLYETLLAKVEATGYMEALQQECNSVMLRRIKPVDP 196

Query: 204 DLV 206
           +  
Sbjct: 197 EKA 199


>gi|302674116|ref|XP_003026743.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
 gi|300100427|gb|EFI91840.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
          Length = 297

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 33/194 (17%)

Query: 2   SKLFIDIE-T---RSPQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L  D+E T    S   +  +       +   I L   A  D  V  +D    + +P+ 
Sbjct: 51  RVLAFDVEYTGRKHSDVAIRPMSIPLPRTQDHFIRLLTIA-RDGVVIAFDLLVLAGVPAR 109

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--------- 107
           L++ LRD  ++ V      + IL  +   + +    W     +++               
Sbjct: 110 LIEMLRDPNIIKVGVELKGDSILLLRHFAVPVH-NGWE----ISQLWKSMHPSIEVAPLT 164

Query: 108 ---SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
              SL +     L               + +    S  +   +    +++ A+ L     
Sbjct: 165 THISLDDMARIVLGVKVDK---------LQQTSDWSAPALSVEQIEYSYLDAYILVPIMH 215

Query: 164 KRDVEATRELFKRL 177
               E    ++   
Sbjct: 216 VVLHEYEMGVWPHF 229


>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
 gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
          Length = 295

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 40/159 (25%), Gaps = 55/159 (34%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
            + ID ET    PL           + I           +K     E   +  ++  +  
Sbjct: 124 YVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFRS 167

Query: 61  -------------LRD------------------ETVMCVAHNSLFERILFKKTL---GI 86
                        L D                       VAHN+ F+       L    I
Sbjct: 168 NISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNI 227

Query: 87  DIPS-KRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           ++    R I T  LAR +       L      LN   + 
Sbjct: 228 ELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNS 266


>gi|258567122|ref|XP_002584305.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
 gi|237905751|gb|EEP80152.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
          Length = 1140

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 8/222 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          KA  T 
Sbjct: 701 GSELKAMVKAPPGYAFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKAAGTD 759

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +    + +++ + + +
Sbjct: 760 LHSKTAKILGISRNNAKVFNYGRIYGAGLKFAATLLRQFNPSISEEETKLIASNLYRETK 819

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              +    + +        +  +    E      R        L   +TE         G
Sbjct: 820 GTRTMRKMISESPFWRGGTESFVFNKLEEFADQER---PRTPVLGAGITEALMRRFINKG 876

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           S    R+    +     +   + + +    R    D +   S
Sbjct: 877 SFMTSRINWAIQSSGVDYLHLLIVSMDFLIRRFNIDARLAIS 918


>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
 gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
          Length = 230

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQ---------------------AVITLCA 34
           M ++  D ET    P     + ++G     +                        +   +
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPERDMPPGAFEVHGLS 60

Query: 35  YAW-DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
             +  D PV        S +  D + ++ D     +AHN+ F+        K      +P
Sbjct: 61  IDFLKDFPVF-------SNIARDFIDFVGDA--TLIAHNAKFDMKFINAELKNANLPQVP 111

Query: 90  SKRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
             + + T  +AR    G  +SL   C   N     
Sbjct: 112 LNQSLDTLEIARKKFPGAQNSLDALCRRFNIDNSS 146


>gi|47219815|emb|CAG03442.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1246

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 43/372 (11%), Positives = 94/372 (25%), Gaps = 39/372 (10%)

Query: 273  LAKDLILNRL-ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
                +I     A    +   +  L +        R      GA               LP
Sbjct: 813  EINKMISFWRNAHKRISSQMVLWLRKVELPRIVSRHKDFDDGAQYGAI----------LP 862

Query: 332  RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA- 390
            +   +  +  + ++      + A         +++ +    G  LV AD+   E  + A 
Sbjct: 863  QVITAGTVTRRAVEPTWLTASNAR-RDRVGSELKAMVQVPPGYHLVGADVDSQELWIAAV 921

Query: 391  ----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446
                  AG                +      +   D V    R   KV      Y  G  
Sbjct: 922  LGEAHFAGMHGCTAFGWMTLQGKKSQGTDLHSRTADAV-GISREHAKVFNYGRIYGAGQA 980

Query: 447  VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
              + +       L Q   + K+   +   +    +HL   ++      +  +     E  
Sbjct: 981  FAERLLMQFNHRLSQTEADRKAKQMYSLTKGVRRYHLS--EEGEWLVKELGI-EVEREEN 1037

Query: 507  KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
                  + + + +L    +      + E    S    +++   +                
Sbjct: 1038 GSVSLQELRRITRLASQCSRRKKWDLVEKRLWSGGTESDMFNKLESIAHSAQPATPVLGC 1097

Query: 567  RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNA---TKN 620
            R+  +            +                 VQ+ + D   ++   MK        
Sbjct: 1098 RISRALEPKAVGNEFITSR------------VNWAVQSSAVDYLHLILVAMKWLCQEHDI 1145

Query: 621  GYDIVLTVHDEI 632
                 +++HDE+
Sbjct: 1146 DGRFCISIHDEV 1157


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens
           DM4]
 gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           DM4]
          Length = 236

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 27/148 (18%)

Query: 1   MSKLFIDIETRS--------PQPLPKVGVWAYAEQAVI--TLC----AYAWDDEPVKLWD 46
           + ++ +D ET             +  V +  + +       L     A +     V    
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61

Query: 47  ---RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL-------GIDIPSKRWIC 95
                ++      +  +L        V HN+ F+                  I  +  + 
Sbjct: 62  DAMLADKPVFAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVD 121

Query: 96  TSVLARTNGLPS--SLKNACLALNFSEH 121
           T +LAR     +  +L   C        
Sbjct: 122 TLLLARRKHPGAANNLDALCNRYGVDTT 149


>gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 236

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 27/148 (18%)

Query: 1   MSKLFIDIETRS--------PQPLPKVGVWAYAEQAVI--TLC----AYAWDDEPVKLWD 46
           + ++ +D ET             +  V +  + +       L     A +     V    
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61

Query: 47  ---RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL-------GIDIPSKRWIC 95
                ++      +  +L        V HN+ F+                  I  +  + 
Sbjct: 62  DAMLADKPVFAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVD 121

Query: 96  TSVLARTNGLPS--SLKNACLALNFSEH 121
           T +LAR     +  +L   C        
Sbjct: 122 TLLLARRKHPGAANNLDALCNRYGVDTT 149


>gi|229472193|gb|ACQ72611.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472303|gb|ACQ72666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
 gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
          Length = 241

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 27/148 (18%)

Query: 1   MSKLFIDIETRS--------PQPLPKVGVWAYAEQAVI--TLC----AYAWDDEPVKLWD 46
           + ++ +D ET             +  V +  + +       L     A +     V    
Sbjct: 7   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 66

Query: 47  ---RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL-------GIDIPSKRWIC 95
                ++      +  +L        V HN+ F+                  I  +  + 
Sbjct: 67  DAMLADKPVFAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVD 126

Query: 96  TSVLARTNGLPS--SLKNACLALNFSEH 121
           T +LAR     +  +L   C        
Sbjct: 127 TLLLARRKHPGAANNLDALCNRYGVDTT 154


>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
          Length = 951

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 13/95 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
               +D E  S +                 L   +  +E   L D          L    
Sbjct: 133 RVFAVDTEQHSLRSFLGFTA----------LIQISTQNED-YLVDTIALHDTLDVLQPVF 181

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
            + ++  V H +  + +  ++     I       T
Sbjct: 182 ANPSICKVFHGADNDVLWLQR--DFHIXVVNLFDT 214


>gi|108861996|ref|YP_654112.1| 13 [Enterobacteria phage K1-5]
 gi|40787082|gb|AAR90053.1| 13 [Enterobacteria phage K1-5]
          Length = 846

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 32/135 (23%)

Query: 556 RDVHIVLPSSRRLVYSDVK--GDCSYLNTATSQLMRERTYGGKL-----TENIVQAISRD 608
               + LPS  RL  + +       YL        R R  GG+L        ++Q     
Sbjct: 644 ARFEVELPSLARLRENVIAQGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSL 703

Query: 609 ILCEGMKN----ATKNGYDI--------VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656
            +   +        K G  +        +  VHDEI  E P+                  
Sbjct: 704 CMKYALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEV-------------LY 750

Query: 657 WAKGLPLKAEGYEAK 671
               LP   EG+E +
Sbjct: 751 LNYDLPFTLEGFETE 765



 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 14/146 (9%)

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           R   + +        +R   IA  GK ++  D AG+E RVL+    +             
Sbjct: 538 RHRNVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPE---------YQ 588

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +  +         K    +R + K    A  Y  G      +       + +       
Sbjct: 589 EIVLHGDIHTHNQMKAGLPKRDMAKTFIYAFLYGSGIANLAAVC-----GVTEEEMEEVV 643

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAV 494
                +          +  Q  +F  
Sbjct: 644 ARFEVELPSLARLRENVIAQGNKFGY 669


>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1278

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E  S +    +GV        + L   +  ++   +     +  M   LL   
Sbjct: 334 REIAVDLEHHSFR--TFLGV--------VCLMQLSTREQDYIVDPLKLRGEM-GRLLPVF 382

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
            D  ++ V H S  + +  ++ LG+ +       T   AR  GLPS  L +     
Sbjct: 383 SDPNIVKVFHGSDSDVLWLQRDLGLYL--VNMFDTGQAARQLGLPSFGLAHLLEKF 436


>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M +L +D ET                       L    +  Y              A A 
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPERESDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKR--- 92
                +   D+ + + +      +++D     + HN+ F+      +   + +P  +   
Sbjct: 57  HGLTTEFLSDKPKFAEIADQFRDFIQDAD--LIIHNAPFDIGFLDAEFALLGLPPVKTYC 114

Query: 93  --WICTSVLARTN--GLPSSLKNACLALNFS 119
              I T   A+    G  +SL   C     S
Sbjct: 115 GEIIDTLARAKQMFPGKRNSLDALCDRFGIS 145


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---------- 45
           M+ + +D ET      S   +      A      +    Y+                   
Sbjct: 1   MNFIAMDFETANHEKHSAVSIA----IAVVRHNQVVDKFYSLIKPETYFSARNTAVHGLK 56

Query: 46  --DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
             D  +    P        L  E  + VAHN+ F+  + K      GI+ P    + T  
Sbjct: 57  ESDVAQAPKFPEVWKIIAPLFKEDKLVVAHNAAFDNSILKGTLAYYGIEEPHYMLLDTVR 116

Query: 99  LARTNGL---PSSLKNACLALNFSEHL 122
            +R          L         +   
Sbjct: 117 TSRKLLPDFKNHKLNTVAENFGITLDH 143


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 30/141 (21%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAE-------------QAVITLCAYAWDDEPVKLW-- 45
            D ET   +P     + ++G                      I L   +    P+     
Sbjct: 534 FDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPEIPLKPASI---PIHGITE 590

Query: 46  DRTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILFK-KTLGIDIP-SKRWICTSVLAR 101
           D          +L       E  + +AHN+ F+    + K    +I  ++  + T +L+ 
Sbjct: 591 DMVRGQPNIDVVLPAFHEFCEDTVLIAHNAAFDMRFLQLKEERTNIRFTQPVLDTLLLSA 650

Query: 102 TNGL---PSSLKNACLALNFS 119
                     L      L  +
Sbjct: 651 VVHPNQESHKLDVILERLGIT 671


>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
 gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
          Length = 404

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 21/168 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D  + L D   Q          + DE ++ V H +  +  +    LG  
Sbjct: 58  PQLCLIQLASPDVTM-LIDPMAQDMDLKPFFDLMVDEKIVKVFHAARQDIEII-YHLGGV 115

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T +     G                           I + C G         
Sbjct: 116 I-PYPLFDTQIAGSICGFG------------------DSISYDQIVQRCTGHQLDKSSRF 156

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
           T  +     +    Y   DV   R+++  L    +  + +  +D  I 
Sbjct: 157 TDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHWMDDEIT 204


>gi|325171157|ref|YP_004251132.1| hypothetical protein ViPhICP1_gp191 [Vibrio phage ICP1]
 gi|323512552|gb|ADX88007.1| conserved hypothetical protein [Vibrio phage ICP1]
 gi|323512778|gb|ADX88232.1| gp35 [Vibrio phage ICP1_2006_D]
 gi|323513006|gb|ADX88459.1| gp35 [Vibrio phage ICP1_2006_C]
 gi|323513231|gb|ADX88683.1| hypothetical protein TUST1-159_00915 [Vibrio phage ICP1_2006_B]
 gi|323513458|gb|ADX88909.1| hypothetical protein TUST1-17_00915 [Vibrio phage ICP1_2006_A]
 gi|323513689|gb|ADX89139.1| gp35 [Vibrio phage ICP1_2005_A]
 gi|323513920|gb|ADX89369.1| gp35 [Vibrio phage ICP1_2001_A]
 gi|323514148|gb|ADX89596.1| hypothetical protein TUST1-10_00920 [Vibrio phage ICP1_2004_A]
          Length = 337

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 60/220 (27%), Gaps = 34/220 (15%)

Query: 2   SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKL------WDRT 48
             L ID+ET               G+     +  I      W   + V         D  
Sbjct: 79  KVLLIDLETAPCKMYGWSLWNQNFGLNQIESEWFILSYCAKWLGSDDVIYNDLKGKVDTE 138

Query: 49  EQSAMPSDLLQYLRDETVMCVAHN-SLFERILFKKTLGID----IPSKRWICTSVLARTN 103
           +   + S+L + +    +  V  N   F+       L ++        +   T       
Sbjct: 139 DDYQLLSELWELMNQADI-VVGQNHRRFDIKRLNARLIMNGFRPYSPVKTEDT------- 190

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFG 160
                L  A     F+ +  +    K  +    +       ++  +     +  AW    
Sbjct: 191 -----LDIAKRKFGFTSNKLEWMTDKLCVEFKKQKHGQFAGFELWKQCLLENEDAWNEMK 245

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            Y   DV +  EL+ +L    D   +  L     N R   
Sbjct: 246 IYNIFDVLSLEELWLKLRAWDDRSVNYALYLDDTNIRCTC 285


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|229472409|gb|ACQ72719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L  E  + +AHN+ F+R   ++ L I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
          Length = 241

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET               E   + L                       A A  
Sbjct: 1   MRQIVLDTETTGLN---HATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIHEDAIAV- 56

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL-GIDIPSKR--- 92
                  D        ++++  +RD  +    + HN+ F+          +D+P  R   
Sbjct: 57  --HGITLDFLADKPKFAEIVNDVRDFVQDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHA 114

Query: 93  --WICTSVLARTN--GLPSSLKNACLALNFS 119
              I T   AR    G  +SL   C  L  S
Sbjct: 115 SNVIDTLREARQMFPGKRNSLDALCDRLGVS 145


>gi|83571734|ref|YP_424986.1| putative DNA polymerase [Enterobacteria phage K1E]
 gi|83308185|emb|CAJ29417.1| gp13 protein [Enterobacteria phage K1E]
          Length = 848

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 32/135 (23%)

Query: 556 RDVHIVLPSSRRLVYSDVK--GDCSYLNTATSQLMRERTYGGKL-----TENIVQAISRD 608
               + LPS  RL  + +       YL        R R  GG+L        ++Q     
Sbjct: 644 ARFEVELPSLARLRENVIAQGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSL 703

Query: 609 ILCEGMKN----ATKNGYDI--------VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656
            +   +        K G  +        +  VHDEI  E P+                  
Sbjct: 704 CMKYALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEV-------------LY 750

Query: 657 WAKGLPLKAEGYEAK 671
               LP   EG+E +
Sbjct: 751 LNYDLPFTLEGFETE 765



 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 14/146 (9%)

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
           R   + +        +R   IA  GK ++  D AG+E RVL+    +             
Sbjct: 538 RHRNVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPE---------YQ 588

Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468
            +  +         K    +R + K    A  Y  G      +       + +       
Sbjct: 589 DIVLHGDIHTHNQMKAGLPKRDMAKTFIYAFLYGSGIANLAAVC-----GVTEEEMEEVV 643

Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAV 494
                +          +  Q  +F  
Sbjct: 644 ARFEVELPSLARLRENVIAQGNKFGY 669


>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
 gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
          Length = 388

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 79/289 (27%), Gaps = 43/289 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D   + L D TE + M    +  L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGNRLSLIDPTELTDMTP-FVALLKDTSVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++                    
Sbjct: 111 CTPFPMVDTQLMAAFLGHGLSTGFASLVEEYLGVELDKSES------------------- 151

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQT 193
              T        Q   +Y   DV     L+++L               + +  +    + 
Sbjct: 152 --RTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQESDLLVSKRIRV 209

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGID 252
            N+    +D+    +L+       K L     +       +    +     L +   G+ 
Sbjct: 210 TNEENAYLDIKGAWQLKPSELAILKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLT 269

Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
                E     I + +        ++     +  +   +     E +  
Sbjct: 270 NFKKMEAEDIDIRAINRHGAKIAAIV---KQAKQTPSEEYPAKIERLMD 315


>gi|262212349|gb|ACY35791.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +             +   +  +    + D    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDELLSSAKAKKKGKEIREAYIDAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L       E      + G  
Sbjct: 120 LDKLLAAIKTASERGFIKAIDGRK 143


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGEI--IDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G+   +   I T  
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLE 534

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHNQL 594

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 595 NDSMGQGDAYK 605


>gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42]
 gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42]
          Length = 381

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 31/192 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID E      L +   W       + L   A     V +    +     +   + + 
Sbjct: 20  FITIDTE-----FLRETTFW-----PELCLIQMASPTMEVLVDPLAKG-IDLAPFFELMA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  V+ V H +  +  +        +       T V A   G   S              
Sbjct: 69  DTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFGDS------------VS 114

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 +       K S  +       +      +   EY   DV   R+++  L    D
Sbjct: 115 YDQLVSRIKNVHIDKSSRFTDWSRRPLS------EKQLEYALADVTHLRDVYLSLSSQLD 168

Query: 183 GERDLWLLDQTI 194
            E     L + +
Sbjct: 169 REGRTSWLREEM 180


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 52/192 (27%), Gaps = 35/192 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE----QAVITLCA-------YAWDDEPVKLWDRTEQ 50
               ID ET          +   A        I               +E +K    T+ 
Sbjct: 62  KFCVIDTETTGL-DFETAKLINIAAVKVVNFKILDIYDVFINPEIPIPEESIKWHGITDD 120

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTS- 97
                   + +  D L+++RD  +  V H+  F+  +     K   G +I +  WI T  
Sbjct: 121 MVKDKPTVAEILPDFLKFIRDSVI--VGHHVNFDLKMINKDLKLYYGSEIKNI-WIDTMF 177

Query: 98  -----VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                +L R      SL       N          G AL        I     +  +   
Sbjct: 178 LYSKNILCR--DDHISLDFLLEKFNVKCIGRHTALGDALATAEVFNKIVVKMKNGFKTVS 235

Query: 153 VQAWQLFGEYCK 164
                 F E+  
Sbjct: 236 DLYRSQFKEFHS 247


>gi|229472175|gb|ACQ72602.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472207|gb|ACQ72618.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S G+ +V ADLAGIE R+L+        +  +  G    +        
Sbjct: 7   PSDSRFRELFLPSPGQIMVGADLAGIELRMLSHF------LAKYDQGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K       +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKQLSSSAAKKKGKEIRTAYVDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLDAIKKASERGFIKALDGRK 143


>gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 223

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 36/149 (24%), Gaps = 35/149 (23%)

Query: 4   LFIDIETRSPQP-----------------------LPKVGVWAYAEQAVITLCAYAWDDE 40
           L  D+ET S  P                       L   GV    E A +         E
Sbjct: 10  LSFDLETTSANPGEARIVTSALVRIDGSSVTSTEELADPGVEIPEEAAAVHGIT----TE 65

Query: 41  PVKLWDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
             +   R     +     ++ +   D   + V  N+ ++  + ++  G            
Sbjct: 66  KARAEGRPHDEVLAETVAEIRKCWEDGLTLVVF-NAPYDLTVLRRLTGTFTVDGPVFDPL 124

Query: 98  VLARTNGL----PSSLKNACLALNFSEHL 122
           V+ R          +L             
Sbjct: 125 VIDRAKDRYRKGKRNLGALSEIYGVRLDN 153


>gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1]
          Length = 412

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 59/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T + +R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELASRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
          Length = 899

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  +E   + D  E  +    L +   D  ++ V H +  +    +K  G+ +   
Sbjct: 326 LMQISTREED-FIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFGLYV--V 382

Query: 92  RWICTSVLARTNGLPS-SLKNACLAL 116
               T   AR   L   SL +     
Sbjct: 383 NMFDTHHAARCLNLGRNSLDHLLKVY 408


>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
 gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
          Length = 384

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 79/268 (29%), Gaps = 41/268 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E      L +   +       + L   A  D    +         P  L   L D
Sbjct: 26  LTLDTE-----FLREKTYY-----PQLCLIQIANHDLIACIDPLAIDDLTP--LYALLHD 73

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E+++ V H ++ ++ +         P K    T V A   G    +  A           
Sbjct: 74  ESIVKVLHAAVQDQEIL--YQSSQQPPKPVFDTQVAASLLGYGDQMGYA----------- 120

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
                  L+ + C   +D        +      +   +Y   DV   RE+++ L    + 
Sbjct: 121 ------KLVEKICGVQLDKSQSRTDWSRRPLN-EKQIDYAADDVRHLREIYQHLKTELER 173

Query: 184 ERDLWLLDQTINDRGYRI----DLDLVLKLQELIAQERKK---LDEDIVKLTDGIIRSSR 236
                 L +  +D         D D   K  +   + R K   + + + +  +       
Sbjct: 174 LGRSDWLQKDFDDLANPQRYDPDPDSAYKRVKQYRRLRPKQLVILKALAEWREKRAMDKN 233

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +    +        +DL  +   T+  I
Sbjct: 234 KPR--KWIASDDLLMDLCKIQPKTVAEI 259


>gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217]
 gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217]
          Length = 386

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 44/189 (23%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAM 53
           S + +D E     T                   + L   A     D+   L D  E   M
Sbjct: 21  SYVTVDTEFLRERTYYS---------------KLCLLQLAVPGKGDDSAVLVDPIEGEDM 65

Query: 54  PSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
             + L +  RD +V+ V H +  +  +F   +   +       T V A   G        
Sbjct: 66  SMEPLYELFRDTSVVKVFHAARQDLEIF--YVDAGVIPDPMFDTQVAAMVCGF------- 116

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              + +            L+ R  K ++D        +           Y   DV   R 
Sbjct: 117 GEQVGYET----------LVKRIAKQTVDKSSRFTDWSRRPLTDAQ-KTYALADVTHLRV 165

Query: 173 LFKRLIPLS 181
           +++ L    
Sbjct: 166 VYEFLAKKL 174


>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 236

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 39/150 (26%), Gaps = 33/150 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET               E   + L                       A    
Sbjct: 1   MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNPGRDSDEGALRVH 60

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG------IDIPSK 91
               +   D+     +   L+ Y+       + HN+ F+       LG            
Sbjct: 61  GLTTQFLSDKPRFEEIAQQLVDYV--GGAEIIIHNAPFDLSFLDMELGRTGRKPFKTCVA 118

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
             + T V+A+    G  +SL   C  L   
Sbjct: 119 GVLDTLVMAKEMFPGKRNSLDALCDRLEVD 148


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 46/191 (24%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK------------------------- 43
           ET     +   G+ A     VI L A       +                          
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 44  --LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
             L D  E   +     +++ D     VAHN+ F+        K  G++      I T  
Sbjct: 475 DMLIDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  +      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
 gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
          Length = 224

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 41/152 (26%)

Query: 1   MSK-LFIDIETRSPQ-----------------PLPKVGVWAYAEQAV---------ITLC 33
           M + +  D ET                      LP    +                +   
Sbjct: 1   MKRSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPERDVPEEASRVHGF 60

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
             A  +   K         +  D L ++ D+    +AHN+ F+        K+     + 
Sbjct: 61  TRADLEGKPKFA------EVADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLG 112

Query: 90  SKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
             R + T  +A  R  G+P+SL   C      
Sbjct: 113 LDRMVDTLDMARERFPGMPNSLDALCRRFGVD 144


>gi|325091155|gb|EGC44465.1| DNA polymerase gamma [Ajellomyces capsulatus H88]
          Length = 1146

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 66/295 (22%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          K+  T 
Sbjct: 699 GSELKAMVRAPPGYVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKSAGTD 757

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +               
Sbjct: 758 LHSKTASILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQE------------- 804

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                    +    +   + K   T  +++         G      +  E FA   +   
Sbjct: 805 --------TKRVAAKLYKETKGTRTNRKILSDNPF-WRGGTESFVFNKLEEFAEQERPRT 855

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +    +              +                                      
Sbjct: 856 PVLGAGITEALMRRFINKGSFMTSR----------------------------------- 880

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     +   +   
Sbjct: 881 -INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVKEHDKYRAA 934


>gi|262342127|gb|ACY54574.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 14/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G  +V AD++GIE R+L+          A  N                 DK+
Sbjct: 13  RRLFMATPGLVMVGADVSGIELRMLSHY-------LARYNTYLGDNLLNGDIHQLNADKI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G +            L       K     E + +A      
Sbjct: 66  -GITRKLVKTVTYAFLYGAGNEKI---GYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSD 121

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                           + G  
Sbjct: 122 LLSAVKSAANRGFVKGIDGRK 142


>gi|262212197|gb|ACY35715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  +  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLFGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLPEAIKKASERGFIKALDGRK 143


>gi|229472191|gb|ACQ72610.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472285|gb|ACQ72657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472519|gb|ACQ72774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472529|gb|ACQ72779.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472531|gb|ACQ72780.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472549|gb|ACQ72789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472609|gb|ACQ72819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 32/150 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ- 59
           M ++ +D ET    PL         E   + L  +      V       +  MP +  + 
Sbjct: 1   MREIVLDTETTGFDPLTG---HRIVEIGCVELFNH-LPTGKVYHQYVNPERDMPEEAFKV 56

Query: 60  ------YLRDE---------------TVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                 +L D+                 + V HN+ F+         +     +P  R I
Sbjct: 57  HGLSEQFLSDKPVFAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLPMSRSI 116

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHL 122
            T  +AR    G  ++L   C         
Sbjct: 117 DTVAMARKKFPGAQANLDALCRRFEIDNTH 146


>gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 58/217 (26%), Gaps = 51/217 (23%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         I   A+    + V L D       +       L 
Sbjct: 50  IGFDCE---GVDLCRNGALC------IMQIAF---PDAVYLVDAIEGGKELVEACKPALE 97

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            + V  V H+   +        GI +     + T +         SL             
Sbjct: 98  SDHVTKVIHDCKRDSEALYFQFGIKLH--NVMDTQIA-------YSL------------- 135

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            + +EGK     +             R   +        Y +++   T     R  P   
Sbjct: 136 IEEQEGKK--RAYDVYISFVSLLADPRYCGM-------PYPEKEEVRTL---LRQDPNFW 183

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             R L      +  R    D+  +L + E + ++  K
Sbjct: 184 KNRPLSE----MMIRAATDDVRFLLNIHEKMMEKLSK 216


>gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b]
 gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b]
          Length = 388

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 21/168 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A   E     D   +    S   + + D +V+ V H +  +  +  +     
Sbjct: 37  PKVCVIQLA-SPEEAFAVDTLAEGLDLSPFFELMADASVVKVFHAARQDLEIIWRLA--R 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G               +                K S  +     
Sbjct: 94  LIPTPLFDTQVAAMVCGFG------------DQASYVELVKAIAKESLDKSSRFTDWSKR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
             +           Y   DV   R+++  L    +    L  L   + 
Sbjct: 142 PLSVAQID------YAIADVTHLRQIYTHLRQRLERSNRLDWLVDEMR 183


>gi|262212089|gb|ACY35661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212167|gb|ACY35700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
           2018]
          Length = 1452

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTE------ 49
              +D+ET    P    + ++G+  Y    VI   +   + E   P ++ + T       
Sbjct: 428 YCVLDLETTGFSPKTEKITEIGIMKYENGKVIDKFSLFVNPEKPIPARVVEVTNITDDMV 487

Query: 50  --QSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
                +     + L   +  + VAHN+ F+    K   K LG +     ++ T  LA+  
Sbjct: 488 KNAETIDKVFPKMLEFIKGSVLVAHNASFDIGFLKHNAKVLGYEFD-FTYLDTLSLAQAV 546

Query: 104 GL---PSSLKNACLALNFS 119
                   L      L   
Sbjct: 547 FPQYKSYKLGRIAKNLGIK 565


>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
          Length = 578

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     V H +  + I  ++  GI +       T   +R   L   SL+     
Sbjct: 325 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERNSLEFL--- 379

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +          +    Y + D      ++ 
Sbjct: 380 ----------------LQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYD 422

Query: 176 RLIPLSDGERD 186
            +         
Sbjct: 423 LIKLELQRMAK 433


>gi|258592196|emb|CBE68505.1| DEAD/DEAH box helicase domain protein [NC10 bacterium 'Dutch
           sediment']
          Length = 980

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 49/178 (27%), Gaps = 37/178 (20%)

Query: 4   LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +  D+ET RS + +         E       A       V   DR E        +  L 
Sbjct: 798 IVFDLETQRSAEDVGG------WEHRHRMGLAVGV----VYDLDRAEFRVYTERQVDALI 847

Query: 63  DE---TVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS-VLARTNGLPSSLKNAC-LAL 116
           ++     + V  N   F+  + +    +D  +   +     + R  G    L +     L
Sbjct: 848 NDLVRARLIVGFNVRRFDFDVLRAYADLDWNALPALDILECIHRRLGFRLKLDHLAQETL 907

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                                    +              +   EYCK+DV  T+ L+
Sbjct: 908 G--------------------ERKSADGLQSLAWFKAGEIERVIEYCKQDVLLTKRLY 945


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA-EQAVIT-LCAYAWDDEPVKLWDR---------TE 49
           M+ + ID ET + +      +     +   +     +    + ++               
Sbjct: 1   MNFIAIDFETANEKRNSPCSIGIVVVKNGEVVERIHHLIKPKEMRFMPINIGIHGIRPAM 60

Query: 50  QSAMPS------DLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
               P        +  +  +   + +AHN+ F+  + +K      I++PS ++ICT  LA
Sbjct: 61  VENEPEFHEVWAKIKHHFNES--LVIAHNASFDISVLRKSAELYDIELPSFKYICTMRLA 118

Query: 101 ---RTNGLPSSLKNACLALNFS 119
                    + L      L + 
Sbjct: 119 KNFYRGIENAKLNTVNDFLGYE 140


>gi|229472171|gb|ACQ72600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +             +   +  +    + D    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDE 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      + G  
Sbjct: 120 LDKLLAAIKKASERGFIKAIDGRK 143


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 41/143 (28%), Gaps = 32/143 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK---------------------L 44
           ID ET     L   G     E AV+ L A    +   +                     +
Sbjct: 9   IDFETTG---LFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNPGRDLGPQRIHQIRASDI 65

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLA 100
            D      +   L+  L     + VAHN+ F+       L              CT  LA
Sbjct: 66  VDAPAFEHIAGQLVDLLE--GRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTMQLA 123

Query: 101 --RTNGLPSSLKNACLALNFSEH 121
                G   +L + C AL+    
Sbjct: 124 REYLPGAGRALADCCAALDIQLD 146


>gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12]
 gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12]
          Length = 369

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 79/307 (25%), Gaps = 48/307 (15%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T                         A+D + + L D    + + S+  
Sbjct: 26  LVLDTEFVRTRTYYAN----------------LGLIQAYDGKTLALIDPVAINNL-SEFW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  +  V H+   +  +F +             + + A   G    L         
Sbjct: 69  SLLTEPGITTVLHSCSEDLEVFAR--NGACQPYNLFDSQIAAALCGFGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +               T        +    Y   DV     L+ +L+
Sbjct: 118 ---------GYAKLVEQTLDISLDKGESRTDWMKRPLSEAQLNYAANDVYYLYNLYPQLL 168

Query: 179 PLSDGERDLWLLDQTIND----RGYRIDLDLVL-KLQELIAQERKKLDEDIVKLTDGIIR 233
                +  L  L +        R    DL+    K++       K+L    V     + +
Sbjct: 169 EKLQEQGRLAWLFEEGERMTSGRLTPPDLEQAYLKVKNAFQLSPKQLAYLKVLARWRLNK 228

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
           +  +  A+   +     I L        + +     +    +  I  +   +      + 
Sbjct: 229 AITRNLAVGFVVKDHALIGLAKKQPQNSQDLYKMIEL-TEQEKRIHGKDLLALLKTADVE 287

Query: 294 TLSEAVS 300
              +A+ 
Sbjct: 288 NPPKAID 294


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKR-WICTSVLARTN 103
           D  +   +  + L+++ D     +AHN+ F+     K  L + I   R +I T   AR  
Sbjct: 463 DMPKIEEVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCLDLRINPIRTYIDTLAFARAL 520

Query: 104 GLP---SSLKNACLALNFS 119
                   L       N +
Sbjct: 521 EPHLKNHKLDTLTKKYNVN 539


>gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
 gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
          Length = 385

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                 A + L   A    DD    L D   +    
Sbjct: 22  YVTVDTEFLRERTYY---------------AKLCLVQLAMPGDDDSNAVLVDPLAKGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L    RDE V+ V H +  +  +F    G  +       T V A   G          
Sbjct: 67  APLYDLFRDENVVKVFHAARQDLEIFFVEEG--VIPSPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K       K S  +       ++          Y   DV   R ++
Sbjct: 117 ----DQVGYETLVRKIAREAVDKSSRFTDWSRRPLSDAQ------KTYALADVTHLRVVY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +  +    +
Sbjct: 167 EYLAKELEKSKRTKWV 182


>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sibiricum 255-15]
 gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
           sibiricum 255-15]
          Length = 937

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 29/145 (20%)

Query: 2   SKLFIDIETR-----SPQPLPKVGVWAYAEQAVI--TLCAYAWDDEPVK-LW-------- 45
             + +D+ET      S   + ++GV A  E   I   L A+    +P+            
Sbjct: 4   KFVVVDLETTGHSIKSGDEMIEIGV-AVIEDGQITERLSAFVRPQKPIPPFISQLTGITD 62

Query: 46  -DRTEQS---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
            D  +      +   +LQ L D  V  VAHN  F+     + L   G    +   I T  
Sbjct: 63  EDVAQAESFATIAPRVLQLL-DGGV-FVAHNVQFDLTFLNEALEEEGYLPYTGPVIDTVE 120

Query: 99  LARTNGL---PSSLKNACLALNFSE 120
           LAR         SL +   AL  + 
Sbjct: 121 LARILLPTAESHSLSHLTEALQLTH 145


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQS------ 51
           +D+ET        +    V+    +  +     TL     D  PV +   T ++      
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSEALEGAPL 85

Query: 52  --AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +    L D   + VAHN++F+  +  +               CT  L++  GLP
Sbjct: 86  FTDIAEEFAARLAD--RVLVAHNAVFDWQMIAREYARARREAPVRQRLCTIALSKELGLP 143

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 144 LPNHKLESLAAHFGV 158


>gi|229472525|gb|ACQ72777.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01]
 gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
          Length = 277

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 40/244 (16%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D   + L D TE + M    +  L+D +V+ V H    +  +F+   G  
Sbjct: 52  PQLGLIQL-FDGNRLSLIDPTELTDMTP-FVALLKDTSVLKVLHACGEDLEVFQNAFG-- 107

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++                    
Sbjct: 108 CTPFPMVDTQLMAAFLGHGLSTGFASLVEEYLGVELDKSES------------------- 148

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQT 193
              T        Q   +Y   DV     L+++L               + +  +    + 
Sbjct: 149 --RTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQESDLLVSKRIRV 206

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGID 252
            N+    +D+    +L+       K L     +       +    +     L +   G+ 
Sbjct: 207 TNEENAYLDIKGAWQLKPSELAILKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLT 266

Query: 253 LVDM 256
               
Sbjct: 267 NFKK 270


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 46/149 (30%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVKL----------WD-------- 46
           +D+ET     L             I   A+   + E  ++                    
Sbjct: 82  LDLETTGLSALEN----------EIIEIAFIRLEGEKRQVFQRFVNPGSPIPPFISRLTG 131

Query: 47  RTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFK-KT--LGIDIPSKRWIC 95
            T +          +  + L  L D +V+ +  N+ F+    + +   LG  +     I 
Sbjct: 132 ITHRDLEGAPDVYTVLEEALPLLED-SVLII-QNAPFDLGFLRPRFLRLGYKMD-NEVID 188

Query: 96  TSVLARTNGLPSS---LKNACLALNFSEH 121
           T   AR      S   L +   A +    
Sbjct: 189 TVAWARRALPGLSKRGLDHLAWAFDLDTI 217


>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGV------------------WAYA--------EQAVITLCA 34
           M ++ +D ET    PL    +                    Y         E   +   +
Sbjct: 1   MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPERDMPEEAFKVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGID-IP 89
             +  +            + +D L+++ D     V HN+ F+         + LG   +P
Sbjct: 61  VEFLSDK----PLFA--EIVADFLEFIGDA--PLVIHNAEFDMRFINAELAR-LGFPALP 111

Query: 90  SKRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
             R I T ++AR    G  ++L   C         
Sbjct: 112 MSRSIDTVMMARKKFPGAQANLDALCRRFEIDNTH 146


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 35/142 (24%), Gaps = 33/142 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------------LWDRT---- 48
           ET     L   G+ A     +I L A       +                   D T    
Sbjct: 419 ETFVVFDLETTGLSA-VYDTIIELAAVKIKGGQIIDKFESFANPHHELSSTTIDLTGITD 477

Query: 49  ----EQSAMPSDLLQYLRDE-TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA 100
                   +   + +Y       + VAHN+ F+        K  GID      I T  LA
Sbjct: 478 DMVKNAPEVEEVIRKYHEWAGDHIMVAHNASFDMGFLYVCYKKYGIDT-VHATIDTLELA 536

Query: 101 RTNGL---PSSLKNACLALNFS 119
           R          L          
Sbjct: 537 RMLHPELKNHRLNTLAKKFGIE 558


>gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 891

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 40/170 (23%), Gaps = 24/170 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E  S +                 L   +  +E   L D      + S L     D
Sbjct: 141 FAVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSD 189

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             +  V H +  + I  ++     I       T+        P  SL             
Sbjct: 190 PNICKVFHGADNDVIWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYL---------- 237

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +   G A      +      P       + +    +  Y    +    +
Sbjct: 238 LETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELK 287


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD--RTEQSAMPSDLL 58
           +F+D+ET                   I     +       P +       + + +  +++
Sbjct: 16  VFVDLETTGGSSAEHRITEIGV--VEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDEMV 73

Query: 59  Q-----------YLRD-ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
           +                +  + VAHN+ F+R   +      GI       +CT  L+R  
Sbjct: 74  RDAPSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFDRAGIAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPREARHGLDALIERHGL 150


>gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 289

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 27/183 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LCA-----YAWDDEPVKLW---D 46
           M+ L +D ET + +      V  A+     +      L       +A  +  V      D
Sbjct: 1   MTVLALDFETANERRDSACAVGLAWIADGRVVRRESHLIRPPEMRFAPGNIRVHGILPAD 60

Query: 47  RTEQSAMPSDLLQYLRDETVMCV-AHNSLFERILFKK---TLGIDIPSKRWICTSVLART 102
             ++    + +  YL D     + AHN+ F+  + +      G+ +P   ++CT  ++R 
Sbjct: 61  VADKPDFAAVMAPYLGDLARGLILAHNASFDIGVLRAGLTRAGLPVPDLAYLCTVQVSRR 120

Query: 103 NGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
              P+     L      L         + G+      C     +   +   A+       
Sbjct: 121 V-FPAPEGCGLGKVARRLGIRFEHH--DAGEDA--YACAEIALAAMRERAVADMHALAAA 175

Query: 159 FGE 161
            G 
Sbjct: 176 LGL 178


>gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
 gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
          Length = 177

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 35/146 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC----AYAWDDEPVKLW---DR 47
           M+ L +D ET S +P   V +         I      L     ++++ +  +      D 
Sbjct: 1   MNFLAMDFETASSEPWSAVSLGLTIVRDNQIAQNWYSLIKPETSFSYWNTEINGLTADDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT------ 96
            +    P        L D+  + V HN  F+  + K   K  G+  P    + T      
Sbjct: 61  LDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTVSLPRK 120

Query: 97  ----SVLARTNGLPSSLKNACLALNF 118
                V          L      L  
Sbjct: 121 FQPGMV-------NHKLDTVVSDLGL 139


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTDYGKHGLNFLAKKYGVD 560


>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 892

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 40/170 (23%), Gaps = 24/170 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E  S +                 L   +  +E   L D      + S L     D
Sbjct: 141 FAVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSD 189

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             +  V H +  + I  ++     I       T+        P  SL             
Sbjct: 190 PNICKVFHGADNDVIWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYL---------- 237

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +   G A      +      P       + +    +  Y    +    +
Sbjct: 238 LETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELK 287


>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
 gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
          Length = 388

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 44/192 (22%), Gaps = 42/192 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T                     L   A   +   +     +     ++ 
Sbjct: 31  IAVDTEFMRDKTYY---------------PKFCLLQIANGTQAACIDPLAIED--LREVE 73

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L +  +  V H +  +  +F               T + A   G P            
Sbjct: 74  CLLFNRAITKVFHAARQDLEIF--FHRFRAVPAPIFDTQLAAPLVGHP------------ 119

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  + G A +     G      +  T  +         EY   DV     L+ R+ 
Sbjct: 120 ------EQVGYASLVSAMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMR 173

Query: 179 PLSDGERDLWLL 190
              +       L
Sbjct: 174 EQLERLGRYAWL 185


>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
 gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
          Length = 405

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A  DE V +        + + L + + D  V+ V H +  +  +        
Sbjct: 43  PKLCVVQLASADEAVAVDALASGLDL-APLFELMADPAVVKVFHAARQDLEIVWNLA--K 99

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V A   G               +          L+   CK S+D      
Sbjct: 100 IIPAPLFDTQVAAMVCGFG------------DQVSYGD-----LVQTVCKVSLDKSSRFT 142

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             +          +Y   DV   R+++  L         L  L   +
Sbjct: 143 DWSRRPLLPAQV-DYAIADVTYLRDIYAILQDKLKETGRLGWLSDEM 188


>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
          Length = 807

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 50/198 (25%), Gaps = 19/198 (9%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y     ++L   +  ++   +            L Q  
Sbjct: 242 KEIAVDLE--------HHDFRSYVGL--VSLMQISTREKDWIVDTLQPWRHKLEVLNQVF 291

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  + I  ++ LG+ +       T         P+  K+    L     
Sbjct: 292 TNPKIVKVFHGAYMDIIWLQRDLGLYVNG--LFDTFFACGQLNYPA--KSLA-YLLSKFV 346

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA--WQLFGEYCKRDVEATRELFKRLIP 179
               ++   L     +       Y      H     +           + T      +  
Sbjct: 347 DFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKTDADKDLIGR 406

Query: 180 LSDGERDLWLLDQTINDR 197
             +  R+           
Sbjct: 407 ALEKSRE--QSLSRYEHP 422


>gi|211956451|ref|YP_002302517.1| DNAP [Bacillus phage AP50]
 gi|171706095|gb|ACB54904.1| DNAP [Bacillus phage AP50]
          Length = 731

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 51/195 (26%), Gaps = 43/195 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L +D ETR                  + L      D          +S    ++L   
Sbjct: 14  KLLTLDTETRGLTG----------NVFRVGLF-----DGTNYY-----KSNTFDEILDLF 53

Query: 62  R---DETVMCVAHNSLFER-----ILFKK-----TLGIDIPSKRWI---CTSVLARTN-G 104
               D       HN  F+       LFK+        I I          + +L  +   
Sbjct: 54  EQYKDYECHVYVHNLDFDLAKIATTLFKRDRVRFAKSIFINGNVVTLHSDSMILHDSLRL 113

Query: 105 LPSSLKNACLALNFSEHLTKMEE------GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           LP SL+  C     +++  K         G A+  +                N       
Sbjct: 114 LPGSLEKLCKDFGLTDNAKKDLSEVIKEQGYAVYKKDGVTFDKKKSLGNYFENVPADDPT 173

Query: 159 FGEYCKRDVEATREL 173
             EY + D  +  E+
Sbjct: 174 LNEYLEFDCRSLYEI 188


>gi|229472483|gb|ACQ72756.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|229472181|gb|ACQ72605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GIFRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L    +  E      + G  
Sbjct: 120 -LDKLLAAIKKASERGFIKAIDGRK 143


>gi|116327255|ref|YP_796975.1| exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116327295|ref|YP_797015.1| exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116332091|ref|YP_801809.1| exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119999|gb|ABJ78042.1| Exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116120039|gb|ABJ78082.1| Exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125780|gb|ABJ77051.1| Exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 256

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 49/188 (26%), Gaps = 27/188 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L++DIET   +   +  V    +                             +L    
Sbjct: 84  KLLYMDIETTGLENDDRTTVIGTFDGFEYHS-----------YIRGFNLDFFLDNL---- 128

Query: 62  RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +  + V++N   F+    ++   +   +          R+ G+   LK     L    
Sbjct: 129 -SQDQIFVSYNGIAFDIPFLEREFNVCFRNNHI-DIMFFLRSLGIKGGLKGCEKVLGIHR 186

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G             +        + + A ++  EY   D     +LF +   L
Sbjct: 187 PEEVSITG---------VEAVNLWKQYVDYDDMNALKILEEYNWEDTVNLEKLFVKGYNL 237

Query: 181 SDGERDLW 188
              E   +
Sbjct: 238 KIKETPFY 245


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 31/140 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
            + +D ET         G+   +  A I+      +     +     +  +P +++    
Sbjct: 64  IVVLDTETTGL-SFKTCGLIEISA-AKISGREI-VERFETFVDP---RKPIPPEIVALTH 117

Query: 61  LRDETV--------------------MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           + DE V                      +AHN++F+R   ++  G    S  WI T  L+
Sbjct: 118 ITDEDVAGAPRAKEAVSALADFVGGLPVLAHNAVFDRTFIERVPGGHEVSNTWIDTLSLS 177

Query: 101 RTNGL---PSSLKNACLALN 117
           R          L     A  
Sbjct: 178 RIALPRLSSHKLSRMAEAFG 197


>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
          Length = 327

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 40/170 (23%), Gaps = 24/170 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E  S +                 L   +  +E   L D      + S L     D
Sbjct: 141 FAVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSD 189

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             +  V H +  + I  ++     I       T+        P  SL             
Sbjct: 190 PNICKVFHGADNDVIWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYL---------- 237

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +   G A      +      P       + +    +  Y    +    +
Sbjct: 238 LETVCGVATNKLLQREDWRQRPLSEEMVRYARXDAHYLLYIADSLTTELK 287


>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
 gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 242

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 30/147 (20%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPEREIDAGAMAVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWI----- 94
            +   D+ + + +  ++  Y++      + HN+ F+          + +P  R       
Sbjct: 61  NEFVADKPKFAEVVDEIRDYVQ--GAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGHI 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T + AR    G  +SL   C  L  S
Sbjct: 119 DTLLDARRMFPGKRNSLDALCDRLGVS 145


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 40/154 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGV------------------WAYA--------EQAVITLCA 34
           M ++ +D ET    PL    +                    Y         E   +   +
Sbjct: 28  MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLS 87

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
             +  +            + +D L+++ D  V  V HN+ F+         +     +P 
Sbjct: 88  ADFLSDK----PLFA--EIVADFLEFIGD--VPLVIHNAEFDMRFINAELTRLGFPPLPM 139

Query: 91  KRWICTSVLA--RTNGLPSSLKNACLALNFSEHL 122
            R I T ++A  R  G  ++L   C         
Sbjct: 140 SRSIDTVMMARKRFPGAQANLDALCRRFEIDNTH 173


>gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354]
          Length = 391

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 40/169 (23%), Gaps = 22/169 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKTLGI 86
             + L     D+      D          LL  L  +E V+ + H    +  +F    G 
Sbjct: 40  PELCLVQIG-DEHEAAAIDPLADGIDLKPLLDLLTENEDVLKIFHAGSQDVEIFYNLTGK 98

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                    T +                     +          L     KG+  +    
Sbjct: 99  T--PHPIFDTQIAMMAISQS------------EQIGYANLVEHWLDKTIDKGARFTDWSR 144

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
               +         EY   DV    ++F R++           L+  + 
Sbjct: 145 RPLTD------RQLEYAIGDVTYLAKIFPRILKKLMKTDRGMWLNAEME 187


>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
          Length = 291

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 40/159 (25%), Gaps = 55/159 (34%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60
            + ID ET    PL           + I           +K     E   +  ++  +  
Sbjct: 124 YVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFRS 167

Query: 61  -------------LRD------------------ETVMCVAHNSLFERILFKKTL---GI 86
                        L D                       VAHN+ F+       L    I
Sbjct: 168 NISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNI 227

Query: 87  DIPS-KRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           ++    R I T  LAR +       L      LN   + 
Sbjct: 228 ELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNS 266


>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 181

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 46/187 (24%), Gaps = 38/187 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWD-RTEQSAMPSDL 57
           + ++ +D+E  S +               + L   +         L D  + +  +P+ L
Sbjct: 28  IREIALDLEAHSHRTFA----------GFVCLIQLSIHISSGYDFLIDALSLRHVIPTCL 77

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNAC-LA 115
              L +  ++ V H +  +    ++  G          T   +R      + L       
Sbjct: 78  GPILANPNILKVMHGADSDIPWLQRDFG--CYVVNLFDTGRASRALKFQSAGLAFLLRKY 135

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                          L     +   D                    Y   D     +++ 
Sbjct: 136 AGLDPDKA-----HQLSDWRRRPLPDD----------------MRTYAVADTRYLLDIYD 174

Query: 176 RLIPLSD 182
           +L     
Sbjct: 175 KLRLELK 181


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 2   SKLFIDIETRSPQP-----------------LPKVGVWAYAEQAVITLC---AYAWD--- 38
            ++ +D ET    P                 LP    +         L    A       
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSK-RWI 94
           D+ VK   +     +  DL++++ D     +AHN+ F+R       K  G  I  + RWI
Sbjct: 62  DDKVKDAPKFH--EIADDLIEFIGDA--PMIAHNAGFDRNFIDFEYKLCGRPITGETRWI 117

Query: 95  CT--SVLARTNGLPSSLKNACLALNFS 119
            T     AR  G+P+SL   C     S
Sbjct: 118 DTLKLAQARFPGMPNSLDALCKRFKVS 144


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 33/205 (16%)

Query: 1   MSKLF--IDIETRSPQPLPKVGVWAYAEQAVITL------CAYAWDDEP---VKLWDRTE 49
           M +++   D+ET    P         A +  +             +       ++ + T 
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60

Query: 50  QSA------MPSDLLQYLRD---ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
            S       +P  +   L        + VAH++ F+     +          ++CT  L+
Sbjct: 61  ISESMMRGGVPEPVAIMLLSCFMSGTIVVAHHAPFDLAFLARY---QFEPDSFVCTRALS 117

Query: 101 RTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
           +       +SL +                G                +   +A        
Sbjct: 118 KLVESDESASLASVAERRGIE------LTGHH--RAMNDVEATVKVFQQMKAEADALGIK 169

Query: 159 FGEYCKRDVEATRELFKRLIPLSDG 183
           +      D E       +L  + D 
Sbjct: 170 YYNVLINDEERPLTYIPKLAKVIDK 194


>gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 872

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 40/170 (23%), Gaps = 24/170 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E  S +                 L   +  +E   L D      + S L     D
Sbjct: 141 FAVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSD 189

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             +  V H +  + I  ++     I       T+        P  SL             
Sbjct: 190 PNICKVFHGADNDVIWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYL---------- 237

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +   G A      +      P       + +    +  Y    +    +
Sbjct: 238 LETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELK 287


>gi|320168640|gb|EFW45539.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 385

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 16/150 (10%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   A ++ P  L+   +   +P  L + L D  +  V      +     +   + +   
Sbjct: 230 LLQLAVENGPCYLFHLIQMQGIPPALQELLADSRIAKVGVGIKNDVTRLVRDYSLKVNGA 289

Query: 92  RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                            L+                +        C     S         
Sbjct: 290 V---------------DLEELAAVRVVPLRTRWSLQALVQKTLNCLLDKSSELRLGNWEE 334

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
              +W+   EY   D  A+ + +  L+ + 
Sbjct: 335 APLSWE-MQEYAANDAHASLQTYLALVAMP 363


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 47/149 (31%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDE---PVKLWD--RTEQSAMP----- 54
            D ET    P              I    A    +    P ++ D        +P     
Sbjct: 281 FDTETTGLMPNKD----------EIVQIGAVRVVNGKIVPGEVIDQLVDPGRPIPPASTK 330

Query: 55  -----SDLLQ-------------YLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRW 93
                 ++++                 ++V+ VAHN+ F+     +     G++      
Sbjct: 331 VHGITDEMVKGAPDAVTSVQQFHTFAKDSVI-VAHNAPFDMAFLHRYGRESGLEWD-HPI 388

Query: 94  ICTSVLARTNGLP---SSLKNACLALNFS 119
           + T +L+          +L   C  L  +
Sbjct: 389 MDTVLLSAVVYGTTEIHTLDALCDRLGVT 417


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 38/146 (26%), Gaps = 37/146 (25%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ-------------- 50
           D  T     +   G+   A   +I L A    D  V  K                     
Sbjct: 425 DT-TYVVFDVETTGLST-AYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTIELTGI 482

Query: 51  -----------SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
                        +  +   ++ D   + VAHN+ F+        K  G++      I T
Sbjct: 483 TDDMVRNAPEVEQVIKEFHAFIGDA--IVVAHNASFDIGFLYTGYKKFGLEDTVHPVIDT 540

Query: 97  SVLARTNGLP---SSLKNACLALNFS 119
             LAR          L   C   N  
Sbjct: 541 LELARLLYPTMKNHRLNTLCKKFNIE 566


>gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
 gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
          Length = 387

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           E   + D              + +E V+ V H +  +  +     GI         T V 
Sbjct: 48  EDALVIDALADGIDLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 106 AMVLGYGDS 114


>gi|229472183|gb|ACQ72606.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472275|gb|ACQ72652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472399|gb|ACQ72714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S G+ +V ADLAGIE R+L+        +  +  G    +        
Sbjct: 7   PSDSRFRELFLPSPGQIMVGADLAGIELRMLSHF------LAKYDQGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K       +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKQLSSSAAKKKGKEIRTAYVDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLDAIKKASERGFIKALDGRK 143


>gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44]
 gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44]
          Length = 209

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYA--------WDDEPVKLWDRTEQSAM 53
            + +D ET +        +     +   IT  AY+        +DDE +++     +  +
Sbjct: 4   FVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDVL 63

Query: 54  PSDLLQYLRD---ETVMC----VAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN 103
                  L +   E  +     VAHN+ F+  + +       I  P   + CT  L+R  
Sbjct: 64  HEKTFDELWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRAV 123

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 124 WPDLVNHKLNTMAAYIGVE 142


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTN---GL 105
           + +D+++++ D     + HN+ F+   F    G+     +   R   + V AR     G 
Sbjct: 77  VAADIVEFIADS--PAIFHNAPFDLGFFDLEFGLLSLPSLDRSRVTDSLVHARKLLPAGA 134

Query: 106 PSSLKNACLALNFSEH 121
            + L   C        
Sbjct: 135 KAGLDALCNRYGIDRT 150


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G+   +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 44/191 (23%), Gaps = 42/191 (21%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     VI L A       +   D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGEI--IDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
                T+   +     ++         VAHN+ F+        K  G+   +   I T  
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLE 532

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
           LAR          L   C  L      +          G  L+            Y    
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQL 592

Query: 150 ANHVQAWQLFG 160
            + +     + 
Sbjct: 593 NDSMGQGDAYK 603


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQ---------PLPKVGVWAYA---------------------EQAVIT 31
            ++ +D ET              + ++G                          E   + 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDI 88
             +         L D    + +  + L+Y+R      + HN+ F+        + L  DI
Sbjct: 67  GIS------DEFLEDCPSFADIADEFLEYIR--GAELIIHNASFDIGFMDYEFRKLNRDI 118

Query: 89  PSK----RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           P      +   +  +AR    G  ++L   C         
Sbjct: 119 PPTETFCQITDSLAMARALFPGKRNNLDALCDRYLIDNSK 158


>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           EO147]
 gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           C6786]
          Length = 240

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET                       L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNPGRDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + +  +L  ++RD     + HN+ F+      +   + +P+     
Sbjct: 57  HGLTTEFLSDKPKFAEIVDELRDFVRDAE--LIIHNAPFDLGFLDAEFSLLGLPTFTDHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 AGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 40/146 (27%)

Query: 4   LFIDIETRSP----QPLPKVGV--WAYAEQAVITLCAYAWDD-----EPVKLWDRT---- 48
           +F+D ET         + ++G+  + Y E   I       D+     +P +         
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQI---VDELNQYQDPQQPIPLRITEL 182

Query: 49  --------EQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                   +  A+  + + Q+L +  ++ +AHN+ F+R  F K   + +P K W C    
Sbjct: 183 TGITDEMVQGKAIDQEAVTQFLENVDII-IAHNASFDRPFFDKMF-LHLPPKAWGC---- 236

Query: 100 ART-NG------LPSSLKNACLALNF 118
           +R              L+      NF
Sbjct: 237 SRADIDWKAEKIESHKLEYLAYKYNF 262


>gi|295670549|ref|XP_002795822.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
 gi|226284907|gb|EEH40473.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
          Length = 1142

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 70/264 (26%), Gaps = 10/264 (3%)

Query: 321 SGCVFQPQN--LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378
           S      +   +  Q      +T+                     +++ + A  G   V 
Sbjct: 656 SLSDPSLKQGFILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMVRAPPGYVFVG 715

Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKV 434
           AD+   E  + + + G+        N          KA  T +   +       R   KV
Sbjct: 716 ADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNDAKV 774

Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494
                 Y  G K   T+       + +      +   +E+ +   ++     ++      
Sbjct: 775 FNYGRIYGAGLKFAATLLRQFNPSMPEQQTKQVAAKLYEETKGTRTNRKIFSNRPFWRGG 834

Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554
            +  +    E   +  R        L   +TE         GS    R+    +     +
Sbjct: 835 TESFVFNKLEEFAEQER---PRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDY 891

Query: 555 KRDVHIVLPSSRRLVYSDVKGDCS 578
              + I +    R    D +   +
Sbjct: 892 LHLLIISMDFLIRRFNLDARLAIT 915


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 232

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 39/154 (25%)

Query: 1   MSKLFIDIETRSPQP-----------------------LPKVGVWAYAEQAVITLCA--Y 35
           +  L  D+ET S  P                       L   G+    E A +      Y
Sbjct: 14  LKVLSFDLETTSANPHEARIVSSALVRIDSNGAHPRELLADPGIEIPEEAAKVHGITTEY 73

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRD---ETVMCVAHNSLFERILFKKTLGIDIPSKR 92
           A +              +  + +  ++    +    + +N+ ++  + +K  G  + +  
Sbjct: 74  AREHGRPH-------EEVLKETIAAIQQAWADGFTLIVYNAAYDLTVLRKLTGDFVVTGP 126

Query: 93  WICTSVLARTNGL----PSSLKNACLALNFSEHL 122
                V+ +          +L + C   N     
Sbjct: 127 VFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDN 160


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 49/186 (26%), Gaps = 28/186 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LC-AYAWDDEP---------VKLWDRT 48
            +  D+ET     +    +   A       I     ++A    P             D  
Sbjct: 425 YVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDRFESFANPHHPLSATTINLTGITDDMV 484

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
           E +   ++ L+  +D     + VAHN+ F+           G+D      I T  LAR  
Sbjct: 485 EGAPEVAEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLDKAENPVIDTLELARLL 544

Query: 104 GL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                   L             +          G  L+      +     Y     +++ 
Sbjct: 545 YPEMKNHRLNTLAKKFDVELTQHHRAIYDAEATGYLLLKMLKDANEKGIIYHDQFNDYMG 604

Query: 155 AWQLFG 160
               + 
Sbjct: 605 KGDAYK 610


>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
 gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
          Length = 858

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 65/271 (23%), Gaps = 50/271 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D     V H +  + +  ++  GI I       T   +R   L   SL++    
Sbjct: 298 LREVFKDPAKRKVMHGADRDVVWLQRDFGIYI--CNLFDTGQASRVLKLERNSLEHL--- 352

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+                 FC  + +    +          +    Y + D      ++ 
Sbjct: 353 LHH----------------FCGVTANKEYQNADWRLRPLPDE-MIRYAREDTHYLLHIYD 395

Query: 176 RLI-----PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
            +         D E     L +                    +    K+L  +   L   
Sbjct: 396 LMRALLLSKPIDNENADPPLLEVYKR-----------SYDVCMQLYEKELFTENSYLNMY 444

Query: 231 IIRSSRQTYALRMYLFLITGI-------DLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
            + S+         +  +          +            L           +   R  
Sbjct: 445 GLPSAGFNAQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVT-ISKLRQL 503

Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314
                      LS  VS    +R ++Q   A
Sbjct: 504 LKSKHSYIERHLSSVVSI---IRHSMQTSAA 531


>gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 35/144 (24%)

Query: 3   KLFIDIETR-------SPQPLPKVGVWAYAEQAVIT---------------LCAYAWDDE 40
            + +D ET            + KV      E                            E
Sbjct: 7   FVALDFETANGKRTSICSVGMVKVVDNEIVETFYTLVNPNDYFSQQNINVHGIQ----PE 62

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS 97
            V          +   +LQ++ +  +  VAHN+ F+  +     + LG+D P   + C+ 
Sbjct: 63  DVATAPVFNF--VLPYMLQFIEN--LPVVAHNAAFDMTVLHASIQALGLDTPEMTYFCSL 118

Query: 98  VLAR--TNGLPSSLKNACLALNFS 119
            LAR   N     L +     +  
Sbjct: 119 QLARRTVNANRYGLNHMMEYYHLD 142


>gi|296277367|ref|ZP_06859874.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MR1]
          Length = 30

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675
           + ++M K   WAKGL L ++G+ +  Y K
Sbjct: 1   IETIMNKPVDWAKGLNLNSDGFTSPFYMK 29


>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
 gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
          Length = 833

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/180 (8%), Positives = 46/180 (25%), Gaps = 31/180 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ +D+E             +Y     ++L   +  ++   +            L +  
Sbjct: 243 KEIAVDLE--------HHDFRSYIGL--VSLMQISTREKDWIVDTLQPWRHKLEVLNEVF 292

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  ++ V H +  + +  ++ LG+ +       T                C  L++   
Sbjct: 293 TNPKIIKVFHGAYMDMVWLQRDLGLYVNG--LFDTFFA-------------CDQLHYPAK 337

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                  K               Y           +    Y + D      ++ ++    
Sbjct: 338 SLAFLLSK------FVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYIYDKVRNEL 391


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 38/143 (26%)

Query: 5   FIDIETRSPQ----PLPKVGVWAYAEQA-------------------VITLCAYAWDDEP 41
           F+DIET         + ++G+    E                      +T      DD+ 
Sbjct: 14  FVDIETTGGPAQRESITEIGIVQVDEDGVREWSTLVRPASRIPETIQRLTGI----DDDM 69

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
           V   D      +  ++   L  +  + VAHN+ F+    +   +  G+D+   + +CT  
Sbjct: 70  VA--DAPRFEDIADEVFDRL--DGRLFVAHNARFDHGHLRAAFRRAGLDMRP-QVLCTVK 124

Query: 99  LARTN---GLPSSLKNACLALNF 118
           L+R          L +       
Sbjct: 125 LSRRLFPDHRRHGLDHLIERHGL 147


>gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 164

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 30/145 (20%)

Query: 1   MSK-LFIDIETRSPQPLPKVGVW-AYAEQAVITLCAYA-WDDEPVKL------------W 45
           M+  + +D ET +        +   + E   I    Y      P               +
Sbjct: 1   MNTFVALDFETANQYRSSVCSIGLVFVENNEIVDTYYQLIKPAPNYYSPFCTQVHGLSQY 60

Query: 46  DRTEQSAMPSDLLQYLRDETVM---CVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           D  +    P    + L    +     VAHNS+F+    +       +   +  + CT   
Sbjct: 61  DTEKAPLFPEVWKEIL--PKIKDLPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRA 118

Query: 100 AR-----TNGLPSSLKNACLALNFS 119
           AR            L        F 
Sbjct: 119 ARKSLPQLVN--HKLDTVSAYFGFD 141


>gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 177

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +      +D   +++   T    
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNEIVDRFYTVINPQMPFDARNIEVHQITADDV 60

Query: 52  ---AMPSDLLQYLRD---ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++   ++D     ++  AHN+ F+  +      +   I  P    I T   ++
Sbjct: 61  RDAPTMAEVWPKIKDLYQPGMLVAAHNARFDTNVMRQSLARYS-ISEPHYLVIDTLATSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     ALN +
Sbjct: 120 LLEPDLPDHKLDTVSEALNVN 140


>gi|262212227|gb|ACY35730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V A+L+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRFRALFLPSPGQVMVAANLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       +     E +  A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSAKAKKRGKEIREAYIDA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          E    + + G  
Sbjct: 117 IDGLDKLLAAIKTASERGFIEAIDGRK 143


>gi|262212065|gb|ACY35649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212229|gb|ACY35731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAVKKASERGFIKALDGRK 143


>gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14]
 gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14]
          Length = 396

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 5/87 (5%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
            +   + D   +          + +E V+ V H +  +  +     GI         T V
Sbjct: 61  PDEAVVVDALAEGIDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGII--PHPIFDTQV 118

Query: 99  LARTNGLPSS--LKNACLAL-NFSEHL 122
            A   G   S         +       
Sbjct: 119 AAMVLGYGDSIAYDALVERVNGHRPDK 145


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 39/152 (25%), Gaps = 47/152 (30%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDE---PVKLWD------------ 46
            +  D ET    P           Q  I   A     +      ++ D            
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRSIPPS 545

Query: 47  -----------RTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFKKT---LGIDIPS 90
                        E   +     ++    +  V+ VAHN+ F+    ++    +G     
Sbjct: 546 STEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFD- 603

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFS 119
              + T +L+          SL      L  +
Sbjct: 604 NPILDTVLLSAVLFGQSDVHSLDALTHRLGIT 635


>gi|169830753|ref|YP_001716735.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 37/142 (26%), Gaps = 33/142 (23%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEP---VKLWDRTEQSAMPSDLLQY--LRD 63
           T     L   G+   A+   I        +D     V          +P+ +     L D
Sbjct: 4   TFVVLDLETTGLDPQAD--EIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDD 61

Query: 64  ETV--------------------MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
             +                      V H+  F+    ++  G    + +   T  LAR  
Sbjct: 62  ADLAERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGY--RATQAYDTVDLARLV 119

Query: 104 ---GLPSSLKNACLALNFSEHL 122
                   L+  C  L+  E  
Sbjct: 120 LPGLPSYRLELLCAHLDLPERP 141


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 27/99 (27%)

Query: 65  TVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGLP---SSLKNACLAL-- 116
             + VAHN+ F+     +    +G++  +   + T +L+          SL   C  L  
Sbjct: 357 DAVLVAHNAPFDLAFLHRFADRMGVE-WTHPVLDTVLLSAVVFGTTEQHSLDALCDRLAI 415

Query: 117 ----NFSEHLTKM--------------EEGKALIARFCK 137
               N                       EGK L      
Sbjct: 416 TIPDNLRHTAFGDAQATAEALVRLIPLLEGKGLTTFGDV 454


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 35/160 (21%), Gaps = 63/160 (39%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +  D ET    P           Q  I   A                  + +++L  L 
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIA---------AVRIVNGRRVEAEVLDTLV 536

Query: 63  DETVMC-------------------------------------VAHNSLFERILFKKT-- 83
           +                                          VAHN+ F+    ++   
Sbjct: 537 NPHRPIPPSSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEP 596

Query: 84  -LGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
            +G        + T +L+          SL      L  +
Sbjct: 597 LIGRRFD-NPILDTVLLSAVLFGQSDVHSLDALTHRLGIT 635


>gi|262342145|gb|ACY54583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R     S G+ +V ADLAGIE R+L+        +  +  G    +        
Sbjct: 7   PSDSRFRELFQPSPGQLMVGADLAGIELRMLSHF------LARYDQGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRRLVKTVTYAFLYGAGDEKI---GHSYDKLLSSTAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLDAIKKASERGFIKALDGRK 143


>gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 843

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 44/180 (24%), Gaps = 23/180 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85
             +TL      +  V ++D    S +     L + L  + V+ V H+   +        G
Sbjct: 414 GKLTLIQIGTMNGNVYVFDLVTCSNLFEAGGLARLLTSDQVIKVIHDCRNDSSTIYFQFG 473

Query: 86  IDIPSKRWICTSVLARTNGL-----------PSSLKNACLALNFSEHLTKMEE----GKA 130
           + +       T        +             SL       N   +  K        K 
Sbjct: 474 VILR--NVFDTKSAHAVIQMQEMGKPVHKVKDVSLNTLYEIYNLPTNPMKEYFKNIYKKD 531

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                 +                    L        ++  +  +K+L+     E+    +
Sbjct: 532 QKIWGRRPLSRDMIV----YAAADVLSLVPHLYSLMLKIIKPEYKKLLEELCEEQIYVHI 587


>gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
 gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
          Length = 241

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 45/163 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           M ++ +D ET   +P          E   + L  +              Q +MP++    
Sbjct: 1   MREIVLDTETTGFEPHEG---DRIVEIGAVELMGH-VPTGRTYHQYINPQRSMPAEAFGV 56

Query: 59  -----QYLRDETVMC----------------------------VAHNSLFERILFKKTLG 85
                  L                                   V HN+ F+       LG
Sbjct: 57  HGIGPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVGDAKLVIHNAAFDMKFLNAELG 116

Query: 86  I----DIPSKRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
                 +P  + + T  +AR    G P+SL   C         
Sbjct: 117 WLNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSS 159


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++   ++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 481 DAPEIEEVLTEFKAWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNAVIDTLELSRT 538

Query: 103 NGLP---SSLKNACLALNFS 119
                    L          
Sbjct: 539 INTSYGKHGLNFLAKKYGVE 558


>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
 gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 109/386 (28%), Gaps = 54/386 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +     +         L    +D E   L D T  S      +  L +
Sbjct: 29  IALDTE-----FIRTRSYY-----PKFGLIQL-FDGEQTSLIDPTTISDFLP-FIDLLAN 76

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H    +  +F+      +     I T ++A  +GL  S               
Sbjct: 77  PNIVKVLHACSEDLEIFQHQFNQAL--TPLIDTQIMAAFSGLGLS--------------- 119

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI----- 178
               G A +               T        +   +Y   DV     ++++L      
Sbjct: 120 ---IGFAKLVNHYLNIELDKGASRTDWLARPLTETQLQYAAADVYYLLPIYQKLQAELAQ 176

Query: 179 -PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE-LIAQERKKLDEDIVKLTDGIIRSSR 236
               +       L     ++   ++           + +++  + + + K      R  +
Sbjct: 177 TNWQEAVNQECQLLVNKRNKTLELNDAYKEISYAWTLTRQQLAILKLLAKWRIEEAR--K 234

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSIL--SHSNITQLAKDLILNR-LASSGSAILKLN 293
           +  AL   +   + I++          +L   H N  ++    IL     +   +     
Sbjct: 235 RDLALNFVIKEQSLIEIAKSQPKHTSQLLTFMHPNEVRIHGKKILWLVEQAKIISEQDYP 294

Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
            L        RL     +    +  +      +P +LP++  + +     +    +    
Sbjct: 295 LLI------TRLVDQPHYKYNLKIMQKKISEIRPPDLPQELLASKRQLNQLLKWYQKGQS 348

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVA 379
              L       R+      GK+++ A
Sbjct: 349 QQYLPELLSGWRAEF----GKQILSA 370


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 31/181 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLWDRTEQSA-- 52
            + +DIET         + ++G     E   IT   +   D E   PV++ + T      
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVK-IENGQITERFSTFVDPEGKIPVRISELTGIYQDM 448

Query: 53  ------MPSDLLQY--LRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 +   +L++      +V+ VAHN+ F+    KK     GI I    +I T  L+R
Sbjct: 449 VDKAPKLSDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSR 506

Query: 102 TN---GLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                     L      LN             E  A I       + +  Y   +  +  
Sbjct: 507 RLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTANIFISLVERLKARGYKWLKELNSI 566

Query: 155 A 155
            
Sbjct: 567 E 567


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 22/136 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPVKLWD------------RTEQ 50
           +F+D+ET                +      + +     P +                   
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEVGPLGVSTWTTLVNPGQSIPPFIQQLTGISDAMVRD 75

Query: 51  SAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN-- 103
           +   + L   L +  +  + VAHN+ F+R   +      G        +CT  L+R    
Sbjct: 76  APSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGYAFNPD-VLCTVRLSRALFP 134

Query: 104 -GLPSSLKNACLALNF 118
                 L         
Sbjct: 135 REARHGLDALIERHGL 150


>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
 gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
          Length = 392

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 21/109 (19%)

Query: 4   LFIDIE----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D E    T     L             +   A A   +   + D            +
Sbjct: 23  ITVDTEFLRETTYYPLLC------------VVQIASA---DEAVVIDSLAPGIDLKPFFE 67

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
            + DE V+ V H +  +  +     GI         T V A   G   S
Sbjct: 68  LMADEHVLKVFHAARQDIEIVWHRAGI--LPHPIFDTQVAAMVLGYGDS 114


>gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
 gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 42/148 (28%)

Query: 6   IDIETRSPQP-------------------------LPKVGVWAYAEQAVITLCAYA-WDD 39
           ID ET    P                         L K GVW       +T    A  D 
Sbjct: 8   IDFETTGMTPAQGARATEVAIVLMEGERVVDRFASLMKTGVWIPPFITRLTGITNAMVDA 67

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT 96
            P           +  +  +++ D     VAHN+ F+   ++   +  G+D     + CT
Sbjct: 68  APAA-------EPVMREAARFVGDA--PMVAHNAAFDSRFWQSELRHAGLD-APHPFACT 117

Query: 97  SVLARTN---GLPSSLKNACLALNFSEH 121
            +L+R         SL      L     
Sbjct: 118 VLLSRRIYPDAPSHSLGRLTDHLGLPRT 145


>gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG]
 gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98]
 gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109]
 gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG]
 gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98]
 gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109]
 gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043]
 gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIETRS-------PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+    D ET S          + KV      ++            E    W        
Sbjct: 12  MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 66

Query: 46  ---DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D       P    Q         + VAHN+ F+  +        G++ P+   +CT 
Sbjct: 67  HESDVANAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
             +R          L   C  LN +
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT 151


>gi|312076359|ref|XP_003140825.1| 3'-5' exonuclease [Loa loa]
 gi|307764011|gb|EFO23245.1| 3'-5' exonuclease [Loa loa]
          Length = 596

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 42  VKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + ++D      +  +  + + L  E ++ V H++     L      I++   +   T V 
Sbjct: 373 IVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINLR--KIFDTQVA 430

Query: 100 ARTN 103
               
Sbjct: 431 HAIL 434


>gi|170588753|ref|XP_001899138.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158593351|gb|EDP31946.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 573

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 42  VKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           + ++D      +  +  + + L  E ++ V H++     L      I++   +   T V 
Sbjct: 351 IVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINLR--KIFDTQVA 408

Query: 100 ARTN 103
               
Sbjct: 409 HAIL 412


>gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1]
 gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1]
          Length = 231

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 30/147 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--- 57
           M ++ +D ET    P   +      E   + +                 +  MP +    
Sbjct: 1   MREIVLDTETTGLNP-YDMPRHRIVEIGAVEIFN-QVPTGKTYHQYIQPERDMPKEAFDV 58

Query: 58  ----------LQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                          D              V HN+ F+        +      +P+ + +
Sbjct: 59  HGIGEDFLADKPIFADIAQDFLDFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQAL 118

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  +AR    G P+SL   C      
Sbjct: 119 DTLKIARQKFPGSPASLDALCRRFGID 145


>gi|46578672|ref|YP_009480.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46448083|gb|AAS94739.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311232545|gb|ADP85399.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 1121

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 45/184 (24%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW----DDEPVKLWDRTEQSAMPSDL 57
              + +D+ETR  +   +VG W  A++      + A      D+    + + E  AM   L
Sbjct: 947  RVMVLDVETR--RSAAEVGGWHRADR---MGVSIAVLHDSGDDSFTAYPQDEVPAMLHRL 1001

Query: 58   LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSV------LARTNGLPSSLK 110
             +       + V  N   F+  +       D+ +   +   +      L+       SL 
Sbjct: 1002 REA-----DLVVGFNIVRFDYTVLSPFAPFDLHTLPTLD-MLQKVKDRLSYRV----SLD 1051

Query: 111  NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            N                              +      R        L  EYC++DVE T
Sbjct: 1052 NLA-------------------QATLNAPKSADGLQALRWWQEGRLDLIAEYCRKDVELT 1092

Query: 171  RELF 174
            R+L+
Sbjct: 1093 RDLY 1096


>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL N1-067]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYATFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKDAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
          Length = 689

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 36/184 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S+L +D+E              Y   Q    L   +   +   L        M   L + 
Sbjct: 276 SELAVDLE-----------HHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEV 323

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119
             +  ++ + H S  + +  ++  G+ +       T   A+   L   SL          
Sbjct: 324 FANPKIVKIFHGSRNDMLWLQRDFGVYV--VNLFDTFFAAKKLDLAKKSLDYL------- 374

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                       +  +CK  +D                +   Y ++D      ++ RL  
Sbjct: 375 ------------LQHYCKIRLDKRFQLADWRMRPIPPNMLR-YARQDTHYLLYVYDRLRA 421

Query: 180 LSDG 183
             + 
Sbjct: 422 DLEK 425


>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYATFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKDAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           D  PV +   T            + ++    L D   + VAHN++F+  +  +       
Sbjct: 65  DPGPVWIHGLTSDVLEGAPLFEDIAAEFASRLAD--RVLVAHNAVFDWSMIAREYARAKS 122

Query: 90  SKRWI---CTSVLARTNGLP---SSLKNACLALNF 118
                   CT  L++  GLP     L++       
Sbjct: 123 QAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGV 157


>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
          Length = 790

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 36/184 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S+L +D+E              Y   Q    L   +   +   L        M   L + 
Sbjct: 276 SELAVDLE-----------HHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEV 323

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119
             +  ++ + H S  + +  ++  G+ +       T   A+   L   SL          
Sbjct: 324 FANPKIVKIFHGSRNDMLWLQRDFGVYV--VNLFDTFFAAKKLDLAKKSLDYL------- 374

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                       +  +CK  +D                +   Y ++D      ++ RL  
Sbjct: 375 ------------LQHYCKIRLDKRFQLADWRMRPIPPNMLR-YARQDTHYLLYVYDRLRA 421

Query: 180 LSDG 183
             + 
Sbjct: 422 DLEK 425


>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 39/151 (25%), Gaps = 37/151 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-----------------YAWDDEPVK 43
           M ++ +D ET     L         E   + L                          V 
Sbjct: 1   MRQIVLDTETTG---LETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQRKVDVGAMEVH 57

Query: 44  LW--DRTEQSAMPSDL-LQYLR--DETVMCVAHNSLFERILFKK--------TLGIDIPS 90
                  E   +   +  ++L   D   + + HN+ F+                 I+   
Sbjct: 58  GITDQFLEDKPLFETVAREFLEFVDGADLVI-HNAPFDVGFINHEIAKLNGAYQAIE-SG 115

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
            R I T  LAR    G  ++L   C      
Sbjct: 116 CRIIDTLALARQKHPGQKNNLDALCKRYGVD 146


>gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602]
 gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 38/204 (18%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           SK+ +D E     T                   + L    +D E + L D      + + 
Sbjct: 23  SKIALDTEFVRTRTYY---------------PQLGLIQL-FDGERLTLID---PLPITAW 63

Query: 57  --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-----L 109
              +  L D  V+   H    +  +F    G  +     I T +LA  +G P S     L
Sbjct: 64  QPFIDLLVDPDVIKFLHAGSEDLEVFLNAFG--VMPSPLIDTQILAAFSGRPLSCGFARL 121

Query: 110 KNACLALNFSEHLTK---MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                        ++       + L  + C  +     Y    A+ +        +    
Sbjct: 122 --VAETTGVELDKSESRTDWIARPLSEKQCVYAAADVWYLLPLADQLMRETQDAGWMDAA 179

Query: 167 VEATRELFKRLIPLSDGERDLWLL 190
           ++    L +R   +   E     +
Sbjct: 180 LDECLALCRRRKEVLQPELAYLEI 203


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWD----------- 46
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 47  -RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L     + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLERFS-IAFANKPWACS 185


>gi|50556422|ref|XP_505619.1| YALI0F19404p [Yarrowia lipolytica]
 gi|49651489|emb|CAG78428.1| YALI0F19404p [Yarrowia lipolytica]
          Length = 1046

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 5/185 (2%)

Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362
            R R   Q       G   G       +  +      +T+                    
Sbjct: 625 NRSRIMSQHCIWDGDGVDMGRGPGFGIIIPRIIPMGTITRRCVENTWLTASNAKKNRIGS 684

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
            ++S I A  G   V AD+   E  + + + G+       +           K+  T + 
Sbjct: 685 ELKSMIKAPPGYSFVGADVDSEELWIAS-LYGDSCFKNHGSTAIGWMTLEGTKSEGTDLH 743

Query: 423 KVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
             +       R   K+      Y  G K  + +      ++     +  +   +   +  
Sbjct: 744 SKTASILGISRNEAKIFNYGRIYGAGLKFAEALLKQFSPNVTDAEASTLAGQLYTSTKGK 803

Query: 479 ESHHL 483
           + + +
Sbjct: 804 KIYSI 808


>gi|322514433|ref|ZP_08067476.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
 gi|322119681|gb|EFX91739.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
          Length = 371

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 91/317 (28%), Gaps = 51/317 (16%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T                   + L    +D E V L D T+     +  +
Sbjct: 29  VTLDTEFIRIRTYY---------------PKLGLIQL-FDGEQVSLIDPTKIDDF-APFI 71

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLA 115
           + L ++ V+ V H    +  +F+            + T ++A   G+  S+   K     
Sbjct: 72  ELLANQQVVKVLHACGEDLEVFQHRFKQ--LPTPLVDTQIMADFAGIGVSMGFAKLVAHY 129

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR--DVEATR-- 171
           L           G +      +   +              W L   Y +   D++ TR  
Sbjct: 130 LQIELDK-----GASRTDWLARPLSEEQLQ----YAAADVWYLLPVYQRLVVDLDVTRWQ 180

Query: 172 -ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230
             + +    L +  ++L       N      D+  V +L        + L +  ++  + 
Sbjct: 181 NAVEEECQTLLEKRQNLP------NSSKAYKDISNVWRLTSAQLAVLQVLAKWRMEEAEK 234

Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG-SAI 289
              +          LF I  +         L   +  + +    K L+L        +  
Sbjct: 235 RDLALNFV-VKGQNLFEIAKLQPKHT--SQLLEFMHPNEVRIHGKKLLLLVEQGKAVTKE 291

Query: 290 LKLNTLSEAVSSDGRLR 306
               T+S  V   G   
Sbjct: 292 DYPPTISRLVDEPGYKH 308


>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
 gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 44/154 (28%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAEQAV---------ITLC 33
           M ++ +D ET                       L    +  Y              +   
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYV-NPERDSDPGALAVHGL 59

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-- 90
              +  +  K  +      +   +           + HN+ F+      +   + +P   
Sbjct: 60  TTEFLSDKPKFAEVAH--QILDFVKDA------ELIIHNAPFDLGFLDAEFARLGLPPFT 111

Query: 91  ---KRWICTSVLARTN--GLPSSLKNACLALNFS 119
                 I T V A+    G  +SL   C     S
Sbjct: 112 EHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLW------------DRT 48
           +F+D+ET                   I     +       P +              D  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGV--VEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDDMV 73

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   + L   L +  +  + VAHN+ F+R   +      GI       +CT  L+R  
Sbjct: 74  RDAPSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPREARHGLDALIERHGL 150


>gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/195 (9%), Positives = 45/195 (23%), Gaps = 30/195 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +  D E      +     +       ++L   ++  E   + D        S + + +
Sbjct: 22  KFIAADTE-----FIRNHLTYY----PRLSLIQISY-GEKSFIVDALAPEVDLSFIKKIM 71

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +  +  V H+   +                   T V A                     
Sbjct: 72  LNREITKVFHSCRQDIESL--FTVFKCIPAPIFDTQVAAMFC-----------HYYHDFI 118

Query: 122 LT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+ E    +      + +S       +           Y   DV    +L + L   
Sbjct: 119 GYSKVVEQYQGVVLDKIKAKNSDWLRRPLSKDQLD------YAISDVVHLYDLHQILCDR 172

Query: 181 SDGERDLWLLDQTIN 195
            +    +    + + 
Sbjct: 173 LEESGRMGWFHEEME 187


>gi|21675090|ref|NP_663155.1| DNA polymerase family B protein [Chlorobium tepidum TLS]
 gi|21648331|gb|AAM73497.1| DNA polymerase family B protein [Chlorobium tepidum TLS]
          Length = 806

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 57/219 (26%), Gaps = 64/219 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQ 59
           +L +DIET       + G     E   I + + + D+   +    ++      +  +L+ 
Sbjct: 166 RLQLDIETYYQPDKKRKGKG-IGEDP-IIIVSLS-DNRSWEHVIHSKGRSEKDLLEELVH 222

Query: 60  YLRDETVMCV-AHNSL-FERILFKK---TLGI---------------------------- 86
            +R +    +  HN   F+    ++     G+                            
Sbjct: 223 IIRQKDPDVIEGHNIFGFDLPYLQRRCELNGVRFAIGRNGLVPRSYPATIRFAERSADFQ 282

Query: 87  --DIPSKRWICT--SVLARTNG----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138
             DIP +  I T   V              LK                        F   
Sbjct: 283 FCDIPGRHVIDTYFLVQNYDISKHTLPSYGLKAVAKFFG-----------------FASP 325

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +     Y    +      +    Y   DV  TREL   L
Sbjct: 326 NRTYVDYKNIASTWDDNPETLLAYALDDVRETRELAALL 364


>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-----QAVITLCAYAW 37
           M ++ +D ET                       L    +  Y              A A 
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPERDSDPG----ALAV 56

Query: 38  DDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS----- 90
                +   D+ + + +   L  ++RD     + HN+ F+      +   + +PS     
Sbjct: 57  HGLTTEFLSDKPKFAEIVDQLRDFVRDAE--LIIHNAPFDLGFLDAEFALLGLPSFTDHC 114

Query: 91  KRWICTSVLARTN--GLPSSLKNACLALNFS 119
              I T V A+    G  +SL   C     S
Sbjct: 115 AGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 386

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 38/198 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID E        +     Y     + L   A+  E   + D        S L   L
Sbjct: 22  KFIAIDTE------FIRNSSEYY---PRLCLMQVAYGREQ-FVIDVLASDMDLSPLNSIL 71

Query: 62  RDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALN 117
            ++ ++ V H+   +   L  K   I         T V A                    
Sbjct: 72  YNKNIVKVFHDCRQDIDALLTKFPKI---PNPIFDTQVAAMFCYC--------------- 113

Query: 118 FSEHLTKMEEGKA-LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 +   G + L+ +F   S+D      +            +Y   DV    EL++ 
Sbjct: 114 -----YENAVGYSRLVEQFLGISLDKLSLKRSNWMLRPLSPDKIQYALNDVIYLHELYQI 168

Query: 177 LIPLSDGERDLWLLDQTI 194
           L         L    + +
Sbjct: 169 LYDNLVDSGKLLWFLEEM 186


>gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITL-----CA---YAWDD-EPVKL 44
           M+ + +D ET      S   +    V      ++    +      +    A    E   +
Sbjct: 1   MNFIAMDFETANHERHSAVSIALAIVRDDKIVDEFYSLIRPETYFSRRNVAIHGIEEHDV 60

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  + S +   +      E  + VAHN+ F+  + K      G++ P    + T   +R
Sbjct: 61  LDAPKFSELWPVIQPLFT-EDKLVVAHNAPFDNGVLKGTLNYYGLEEPHYMLLDTVRTSR 119

Query: 102 TNGLP---SSLKNACLALNFS 119
                     L      L  S
Sbjct: 120 QFFPSFNNHKLNTVAENLGIS 140


>gi|288959282|ref|YP_003449623.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288911590|dbj|BAI73079.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 25/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC--------AY--AWDDEPVKLWDR 47
           + ID ET +        +  A+ E   +T     L         ++  A      +  D 
Sbjct: 9   VAIDFETANETRTSACSIGVAWIEDGRVTATEEHLIRPREPRFNSFNSAIHGIRAE--DV 66

Query: 48  TEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICT-SVL--A 100
            +    P             + +AHN+ F+  + + T    G+D P+  ++CT  +   A
Sbjct: 67  ADAPEFPEVWATLRERVRGRLILAHNAAFDISVLRHTLTDYGLDWPACDYLCTVMLARRA 126

Query: 101 RTNGLPSSLKNACLALNF 118
                   L +    L  
Sbjct: 127 WPALTGHRLNHLADFLGI 144


>gi|262212111|gb|ACY35672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342243|gb|ACY54632.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAVKKASERGFIKALDGRK 143


>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
 gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
 gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 38/152 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------------WDDEPVKL- 44
           M  + +D ET     +P        E   + +                    D+  + + 
Sbjct: 1   MRSVVLDTETTG---MPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVH 57

Query: 45  -------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-------DI-P 89
                   D+     +  +  ++++D     V HN+ F+         +       +I  
Sbjct: 58  GITNEFLVDKPRFRDIADEFFEFIKDAQ--LVIHNAAFDLGFINNEFALLGQQDRAEITD 115

Query: 90  SKRWICTSVLA--RTNGLPSSLKNACLALNFS 119
               + T ++A  R  G  +SL   C      
Sbjct: 116 HCTVLDTLLMARERHPGQRNSLDALCKRYGVD 147


>gi|330907546|ref|XP_003295846.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
 gi|311332479|gb|EFQ96060.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
          Length = 1157

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 57/550 (10%), Positives = 130/550 (23%), Gaps = 77/550 (14%)

Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
            +       L++S    KM +GK         +    P        + A          +
Sbjct: 452 YNNDPWLSQLDWSGQEIKMVKGKKKNDPPRPAARQKKPGMPKWYKDLFA----KSDGPMN 507

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV-----LKLQELIAQERKKLD 221
           +     +   L+ L+     +   D+        +D         +K  ++  +E  KL 
Sbjct: 508 LTVRTRITPILLKLAWDGHPMVWSDKHGWTYKVPMDEVFAYNDKGMKQLDMSEEENLKLR 567

Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLIL 279
           +D   +   I             L     +   +  +             +       I 
Sbjct: 568 DDTENVYFKIPHKDGPLARCANPL-AKGYLQYFEKGKLGSEYAYAKEALEMNASCSYWIS 626

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
            R       ++    + +  S   +         A+R  +    + Q             
Sbjct: 627 ARDRIMSQMVVYDKDVPKK-SKVPKAPKLTSASTATRGKKVGFILPQI-------IPMGT 678

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
           +T+                     ++S + A  G   V AD+   E  + + + G+    
Sbjct: 679 ITRRSVENTWLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSQELWIAS-LIGDATFQ 737

Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHC 455
               N          KA  T +   +       R   KV      Y  G K   T+    
Sbjct: 738 LHGGNAVGFMTLEGTKAAGTDLHSRTAAILGISRNDAKVFNYGRIYGAGLKFASTLLRQF 797

Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
              L +      +   +++ +  ++    + ++       +  +    E   +  R +  
Sbjct: 798 NPSLTEAQTTKTAEDLYKNTKGVKTIRKQLHERPFWRGGTESFVFNKLEDFAEQERPRTP 857

Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575
                   +         +   +S             +     ++ L             
Sbjct: 858 --------VLGAAITEALQRRYLSKGGFMTSRINWAIQSSGVDYLHLL------------ 897

Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635
               ++  T +                                     + +TVHDEI   
Sbjct: 898 -IVSMDYLTRRF-------------------------------NLDCRLSITVHDEIRYL 925

Query: 636 TPDTPYFSVG 645
             +   +   
Sbjct: 926 VKEEDKYKAA 935


>gi|262342125|gb|ACY54573.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R     S G+ +V ADLAGIE R+L+        +  +  G    +        
Sbjct: 7   PSDSRFRELFQPSPGQLMVGADLAGIELRMLSHF------LARYDQGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSTAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLDAIKKASERGFIKALDGRK 143


>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
 gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
 gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 21/127 (16%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112
           +PS +   L D  ++ ++H +  +  L  +  G  + S+ ++              L++ 
Sbjct: 105 LPSSVSHILSDPDILKISHGAPSDMRLMYRHFG--VRSRSFVD-------------LQSV 149

Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
           C  L       K    + L  R  K    S       +      Q   +Y   D   T  
Sbjct: 150 CEELQLRPCSLKSVVQRVLGLRLSKKQQCSNWEAAELS------QQQIKYAATDAWVTLA 203

Query: 173 LFKRLIP 179
            F +L P
Sbjct: 204 AFLKLKP 210


>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes str. 4b F2365]
 gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes EGD-e]
 gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL R2-561]
 gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
           1054]
 gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
           HI2424]
 gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 44/154 (28%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAEQAV---------ITLC 33
           M ++ +D ET                       L    +  Y              +   
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYV-NPERDSDPGALAVHGL 59

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-- 90
              +  +  K  +      +   +           + HN+ F+      +   + +P   
Sbjct: 60  TTEFLSDKPKFAEVAH--QILDFVKDA------ELIIHNAPFDLGFLDAEFARLGLPPFT 111

Query: 91  ---KRWICTSVLARTN--GLPSSLKNACLALNFS 119
                 I T V A+    G  +SL   C     S
Sbjct: 112 EHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
 gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +      +D   +++   T +  
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQIHQITAEDV 60

Query: 52  ---AMPSDLLQY---LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++  +   L    ++  AHN+ F+  +      +  GI+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARY-GIEEPHYLVIDTLASSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     ALN  
Sbjct: 120 LLEPELPDHKLDTVSEALNVE 140


>gi|218437100|ref|YP_002375429.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7424]
 gi|218169828|gb|ACK68561.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7424]
          Length = 838

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 15/76 (19%)

Query: 57  LLQYLRD-----ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR-----TN 103
           L + + D      + + + HN+  +R + K T    GID    ++ C+ VLA+       
Sbjct: 54  LKEIIADFVGIASSNLIICHNANHDRQVLKNTFKKVGIDWQPFKFKCSLVLAQNTFPGLL 113

Query: 104 GLPSSLKNACLALNFS 119
               SL+     L   
Sbjct: 114 --SYSLEYLSKQLTLK 127


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 36/143 (25%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ----------------- 50
           T     +   G+   A   +I L A    D  V  K                        
Sbjct: 452 TYVVFDVETTGLST-AYDTIIELAAVKIKDGHVIDKYESFANPHHPLSATTIELTGITDD 510

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
                     +  +   ++ D   + VAHN+ F+        K  G++  +   I T  L
Sbjct: 511 MVRHAPEVEQVIKEFHAFIGDG--IVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLEL 568

Query: 100 ARTNGLP---SSLKNACLALNFS 119
           AR          L   C   N  
Sbjct: 569 ARLLYPTMKNHRLNTLCKKFNIE 591


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 27/140 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVI-----------TLCAYAWDDEPVK----L 44
            +  DIET    P+    +   A       I               Y  +         +
Sbjct: 498 FVVFDIETTGFSPIKNRIIEIGAVKIRNGEILERFSEFINPQVPIPYRIEKLTSITDEMV 557

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
            D   +  +    +++ +D   + V HN  F+     +    LGID+       T  LAR
Sbjct: 558 MDAPTREVIIPKFVEFCKDA--VLVGHNVAFDISFINQNCQDLGIDVDYTTV-DTLWLAR 614

Query: 102 T---NGLPSSLKNACLALNF 118
                    +L      LN 
Sbjct: 615 YFFPLQAKHTLDAVAKTLNV 634


>gi|262212053|gb|ACY35643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 13/145 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIG 500
                       +  E      L G
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDG 141


>gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 153

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 69  VAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFS 119
           VAHN++F+         +    +I S+  + T  LAR      P+SL   C      
Sbjct: 6   VAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGID 62


>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
 gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|262212235|gb|ACY35734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +     Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYEFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
 gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 1816]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes Finland 1988]
 gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 10403S]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 41/156 (26%), Gaps = 50/156 (32%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--------DDE-------PVKLW 45
           ++ +  D ET    P         AE   I   A           D E       P +  
Sbjct: 534 LNYVVFDTETTGLSP---------AEGDEIVSIA-GVRMVNGRLLDGERFEQLVNPGRTI 583

Query: 46  D----RTEQ------------SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGI 86
                                  +      ++ D   + VAHN+ F+    +   +  G+
Sbjct: 584 PRSSILFHGIHDTTVADKPRIETVLPRFHTFVGDS--VLVAHNAAFDMKFIRLKERRCGV 641

Query: 87  DIPSKRWICTSVLA-RTNGLP--SSLKNACLALNFS 119
                  + T +L+   +      +L+     L   
Sbjct: 642 RFD-NPVLDTLLLSVFLHDHTADHTLEAIAARLGVE 676


>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
 gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 40/141 (28%), Gaps = 22/141 (15%)

Query: 3   KLFIDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT-------E 49
            + +DIET        + ++G         +   +   + +   P K+   T       +
Sbjct: 99  YVAVDIETTGLGRDARIIELGAVRIRHGRKVASYSQLVNPQIPIPAKVTQITGITDRNVK 158

Query: 50  QSAMPSDLLQYL--RDETVMCVAHNSL-FERILFKK---TLGIDIPSKRWICTSVLARTN 103
                   L            + HN   F+  +  +    +G  +P   +  T  L++  
Sbjct: 159 GKPTIDKALPKFYAFCGRDTWIGHNIRRFDIPVIAREAQRVGAGMPDVSFYDTMELSQAL 218

Query: 104 GL---PSSLKNACLALNFSEH 121
                   + +       ++ 
Sbjct: 219 LPQLDHHRVVDLIRYFGIAKT 239


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 38/144 (26%)

Query: 5   FIDIETRSP----QPLPKVGVWAYAEQA-------------------VITLCAYAWDDEP 41
           F+D+ET         + +VG+    E                      +T  +       
Sbjct: 12  FVDLETTGATAVIDRITEVGIVEVDEDGVRHWSSLVNPHRHIPEFIEGLTGIS------N 65

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
             + D      + +++ Q L     + +AHN+ F+    K      GID      +CT  
Sbjct: 66  AMVADAPGFDELAAEIHQRLE--GRIFLAHNARFDHGFLKNEFKRVGIDFRPT-VLCTVK 122

Query: 99  LARTN---GLPSSLKNACLALNFS 119
           L+R         +L          
Sbjct: 123 LSRKLYPEFAKHNLDTLAERHQLQ 146


>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 40/170 (23%), Gaps = 24/170 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E  S +                 L   +  +E   L D      + S L     D
Sbjct: 77  FAVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSD 125

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122
             +  V H +  + I  ++     I       T+        P  SL             
Sbjct: 126 PNICKVFHGADNDVIWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYL---------- 173

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
            +   G A      +      P       + +    +  Y    +    +
Sbjct: 174 LETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELK 223


>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 44/154 (28%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAEQAV---------ITLC 33
           M ++ +D ET                       L    +  Y              +   
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYV-NPERDSDPGALAVHGL 59

Query: 34  AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPS-- 90
              +  +  K  +      +   +           + HN+ F+      +   + +P   
Sbjct: 60  TTEFLSDKPKFAEVAH--QILDFVKDA------ELIIHNAPFDLGFLDAEFARLGLPPFT 111

Query: 91  ---KRWICTSVLARTN--GLPSSLKNACLALNFS 119
                 I T V A+    G  +SL   C     S
Sbjct: 112 EHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGIS 145


>gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
 gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 66/279 (23%), Gaps = 57/279 (20%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWD-RTEQSAMP 54
            + ID E     T                   + L   A         L D         
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPVEAPDMSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    R E  + V H +  +  +F   +   +       T V A   G          
Sbjct: 67  EPLYDLFRHEPTVKVFHAARQDLEIF--FVEGRVFPTPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K    +  K S  +       ++          Y   DV   R ++
Sbjct: 117 ----EQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQ------KTYAIADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLD---------LVLKLQELIAQERKKLDEDIV 225
           + L    +       ++    +     D +          +       +     + +++ 
Sbjct: 167 EWLSAQIEKNGRQRWVE---EELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKELA 223

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +  +   + +         L     +++       ++ +
Sbjct: 224 RFREEYAQKNNVPR--SRVLKDDALLEIASTRPTNVEEL 260


>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes J0161]
 gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
 gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|298373403|ref|ZP_06983392.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274455|gb|EFI16007.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 249

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 54/196 (27%)

Query: 22  WAYAEQAVITLCA---YAWDDEPV--KLWDRTEQSAM--PSDLLQYL----RDETVMCVA 70
             Y+E A I   +   +A +++    ++      + +    D    L     +       
Sbjct: 67  GIYSEFAKIVCISIGVFARENDKASLRIKSLAGDNEIAILQDFAYILQKFSANRNCQICG 126

Query: 71  HNSL-FERILFKKTL---GIDIPS-----------KRWICTSVL-------ARTNGLPSS 108
           HN   F+     + +   GI+IP              ++ T  L       + T     S
Sbjct: 127 HNIKEFDIPFVCRRMLINGIEIPECINVAGKKPWEVPFVDTLELWRFGDYKSYT-----S 181

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           LK     L                                     +       YC++DV 
Sbjct: 182 LKLLTTILGIPTPK----------------DDIDGSQVARVYYIEKDIARIARYCQKDVL 225

Query: 169 ATRELFKRLIPLSDGE 184
           AT  L++RL  +   E
Sbjct: 226 ATARLYQRLNNIPTVE 241


>gi|262342143|gb|ACY54582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +   +R+  + S G+ +V ADL+GIE R+L+        +  + +G    +        
Sbjct: 7   PSDPRLRALFLPSPGQAMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|229472195|gb|ACQ72612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYGKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|229472255|gb|ACQ72642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 13/144 (9%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS    +V ADLAGIE R+LA          A  +             +    
Sbjct: 11  EFRKLFRASPTLVMVGADLAGIELRMLAHY-------LARYDEGRYADVLLNGDIHQENA 63

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
                 R   K +  A  Y  G              L +     K     + +  A    
Sbjct: 64  DKIGISRKQVKTVTYAFLYGAGDAKL---GRSYDPQLSEKDAKKKGKEIRQAYMDAVPGL 120

Query: 483 LW---MQDQYPEFAVKDKLIGTAC 503
                      E    +   G  C
Sbjct: 121 EKLVTAVKSKAESGYINLCDGRRC 144


>gi|154283185|ref|XP_001542388.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
 gi|150410568|gb|EDN05956.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
          Length = 1126

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 62/295 (21%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          K+  T 
Sbjct: 679 GSELKAMVRAPPGYVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKSAGTD 737

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +               
Sbjct: 738 LHSKTANILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQE------------- 784

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                      +      K+         +         G      +  E FA   +   
Sbjct: 785 ---------TKRVAANLYKETKGTRTNRKILSDNPFWRGGTESFVFNKLEEFAEQERPRT 835

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596
            +    +              +                                      
Sbjct: 836 PVLGAGITEALMRRFINKGSFMTSR----------------------------------- 860

Query: 597 LTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                +Q+   D   +L   M            + +TVHDEI     +   +   
Sbjct: 861 -INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVKEHDKYRAA 914


>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 36/149 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWDD 39
            ++ +D ET    P          E A + L                       A     
Sbjct: 3   RQIVLDTETTGLNP---ASGDRIIEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHG 59

Query: 40  -EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------KKTLGIDIPSKR 92
                L D+   + +  DLL+++RD  +  + HN+ F+                      
Sbjct: 60  LTEEFLSDKPRFAQIADDLLEFVRDAEI--IIHNAPFDCAFLDAELERLNRPAFKQHVPL 117

Query: 93  WICTSVLARTNGLPS--SLKNACLALNFS 119
              T  +A+        +L   C      
Sbjct: 118 VTDTLAMAKLQFPGKFNNLDALCKRFGID 146


>gi|262342133|gb|ACY54577.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R     S G+ +V ADLAGIE R+L+        +  +  G    +        
Sbjct: 7   PSDSRFRELFQPSPGQLMVGADLAGIELRMLSHF------LARYDQGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSTAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLDAIKKASERGFIKALDGRK 143


>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
 gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 190

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 36/123 (29%)

Query: 3   KLFIDIETRS----------------PQPLPKVGVWAYAEQ------AVITLCAYAWDDE 40
            +F+D ET                     L KV    Y+        A I        DE
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDEDLNLKKVFNQYYSVDRMSRSAAKIHGLTMEILDE 61

Query: 41  PVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                  +          ++   L D   + + HN  F+    K   + LG +   K   
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDS--IIIGHNISFDIRFLKTEFERLGPEYVPKDKF 113

Query: 95  CTS 97
           CT 
Sbjct: 114 CTM 116


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 21/111 (18%)

Query: 6   IDIETRSPQP----LPKVGV--WAYAEQAVI--TLCAYAWDDEPVKLWDRT--------- 48
           +D ET    P    + ++G   + YA+   I      +    +P K              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 49  ---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
              +   +P D L  L     + +AHN+ F+R   ++   I   +K W C+
Sbjct: 136 EMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLERFS-IAFANKPWACS 185


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETR-------SPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQS 51
           M  + ID ET            L  V      E+    I  C   +    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------AMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
                    +  ++  Y+  +  + +AHN+ F+  + +K      I  P   + CT V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDILYPDFEYACTVVMA 118

Query: 101 --RTNGLP-SSLKNACLALNFS 119
                 LP   L     AL F 
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFE 140


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 53/182 (29%), Gaps = 27/182 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDE---PVKLWDRTEQSAMPS 55
            + +DIET          +   A   E   I    +   D E   P+++ + T       
Sbjct: 390 FVVVDIETTGFDNQKDRIIEIGAVKIENGEIVDRFSTFVDPEGKIPIRISELTGIYQNMV 449

Query: 56  DLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
           D    L D            + VAHN+ F+    K++    G+ I    +I T  L+R  
Sbjct: 450 DNAPKLSDAILEFEKFCSGAILVAHNAQFDIGFLKRSYQECGL-IFDYTYIDTLELSRRV 508

Query: 104 ---GLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                   L      LN             E  A I       + S  Y   +  +    
Sbjct: 509 LTDLSSHKLNKVAEFLNIELKHHHRADSDAETTAKIFISLIEKLKSRGYKYLKELNTIET 568

Query: 157 QL 158
             
Sbjct: 569 NT 570


>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
          Length = 1189

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 17/124 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E             +Y     IT     +  +    L D     +    L + 
Sbjct: 253 KEIAVDLE-----------HHSYRTFQGITCLMQISTVNTD-YLIDTLALRSELHQLNEI 300

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LALNF 118
               T++ + H +  + +  ++   + +       T   A+   LP  SL          
Sbjct: 301 FTKPTILKIFHGADMDILWLQR--DLSLYVVNMFDTHQAAKQLNLPYLSLAYLLNKYCGI 358

Query: 119 SEHL 122
           + + 
Sbjct: 359 NPNK 362


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLWDRTE----- 49
            + +DIET         + ++G     E   IT   +   D E   PV++ + T      
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVK-IENGQITDRFSTFVDPEGKIPVRISELTGIYQDM 448

Query: 50  QSAMPSDLLQYLR-----DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
               P  +   L        +V+ VAHN+ F+    KK     GI I    +I T  L+R
Sbjct: 449 VDKAPKLIDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSR 506

Query: 102 TN---GLPSSLKNACLALN----FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                     L      LN             E  A I       + +  Y   +  +  
Sbjct: 507 RLLTDLSSYKLNKVAEFLNVELRHHHRADSDAETTAGIFISLLERLKARGYKWLKELNSI 566

Query: 155 A 155
            
Sbjct: 567 E 567


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT----L-------CAYAWDDEPVKLWDRT 48
            +  DIET     L        A   E   I              +    +      +  
Sbjct: 417 FVVFDIETTGLSHLKNNITEIGAVRVESGKIVDVFNGLVNPEQEISQEITEITGITNEMV 476

Query: 49  EQSAMPSDLLQ-YLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
               + S+++  +L   +  + VAHN+ F+    K   K L ++     +I T   AR  
Sbjct: 477 ADKPLISEIMPKFLEFSKNAVFVAHNAEFDISFIKTNCKRLNLEFNPT-FIDTMGFARAI 535

Query: 104 GLP---SSLKNACLALNFS 119
                   L   C  L  +
Sbjct: 536 LPHLKNHKLNTLCKELGVN 554


>gi|319427358|gb|ADV55432.1| 3'-5' exonuclease [Shewanella putrefaciens 200]
          Length = 301

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 39/187 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +  D ETR+             +   ++L   A  D    L+           L   L
Sbjct: 114 RVIGFDTETRASF-------ERGVQHP-LSLIQIATHD-TCYLFQHALLDEQLGLLKPVL 164

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE ++ V      +     +  GI++                           L+ +  
Sbjct: 165 EDENILKVGVGLRSDGQALTREWGINVTP------------------------RLDLNWV 200

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE------YCKRDVEATRELFK 175
           L ++  GK +  R    ++     D  +   +  WQ          Y   D  A +  F 
Sbjct: 201 LAQLGAGKEMGTRQLVATLLQKRIDKPKKVTLSNWQQVPLTSTQIVYAALDALAAQHCFS 260

Query: 176 RLIPLSD 182
            LI    
Sbjct: 261 ELIDKLK 267


>gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
 gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
          Length = 394

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 61/229 (26%), Gaps = 30/229 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A   +   + D   +        + +RD +V  V H +  +  +    LG +
Sbjct: 37  PKLCVIQMA-GPDMAFIVDALSEGLDLEPFFELMRDGSVTKVFHAARQDIEII-YHLG-E 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G   S                    K   AR  K S  +     
Sbjct: 94  LIPAPLFDTQVAAMVCGFGDS------------ISYDQLVYKVTGARIDKSSRFTDWARR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN----DRGYRIDL 203
                         Y   DV   R+ ++ L      +  +  +   +        YR D 
Sbjct: 142 PLTAKQLD------YALADVTHLRDAYQFLKANLAEQDRIHWVQDEMQVLTSVNTYRTDP 195

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRS-----SRQTYALRMYLFL 247
           +   K  +L  ++  +L   +         +      R        ++ 
Sbjct: 196 EQAWKRLKLRVRKPVELAVMMEVAAWREREAQSRDVPRSRVVKDDAIYE 244


>gi|66811680|ref|XP_640019.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60468043|gb|EAL66053.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 390

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 50/205 (24%), Gaps = 27/205 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
             + +DIE      + K G         I+L   +  +  + L+D        +     L
Sbjct: 185 KLIGLDIE---AIEMGKKG--------DISLVQISTPNGRIYLFDIIKMGANVTPFKYGL 233

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L    ++ V H+   +  +        +         +                   
Sbjct: 234 KEVLESVKILKVVHDCRRDSEIL--FHRYQVALAHVYDVQIAHALVQKKIQGNIPIRRYG 291

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL------FGEYCKRDVEATR 171
           F+    ++ +                       N  + W        F +Y   D     
Sbjct: 292 FN----ELIDLYTSRKYSEICIDIKFKVKQQFENQPEVWAKRPLPKDFIDYASLDAACLL 347

Query: 172 ELFKRLIPLSDGERDLWLLDQTIND 196
            ++  + P      D   L    N+
Sbjct: 348 PIYYHIKPKLQSNFDRRFLKTHFNE 372


>gi|238695633|ref|YP_002922660.1| P46 [Xanthomonas phage phiL7]
 gi|190344000|gb|ACE75786.1| P46 [Xanthomonas phage phiL7]
          Length = 478

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 73/284 (25%), Gaps = 41/284 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTE-------Q 50
           MS + +D+E  +     K     +     +    +    +       +   +        
Sbjct: 1   MSYVVLDLE-TTTTTRFKRKATPFNSLNKVVALGWKRQGDTRNTGVYYPTAKAMDGTYSG 59

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERIL------FKKTLGIDI--PSKRWICTSVLART 102
            A    L   L   T   V HN  F+ +         +   ID      +  CT +    
Sbjct: 60  GAKDGWLAPLLE-GTTFLVGHNGKFDILHAICSGPLNRKAWIDYIDRGGQIWCTQLGEYL 118

Query: 103 NG------LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                     +SL                K    +A I      +     Y     +H  
Sbjct: 119 LHGQAQEYQIASLDEVAPRYGGNLKNDAVKSLW-EAGIDTPDIDADMLMEYLIGYESHHN 177

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI---------NDRGYRIDLDL 205
                G+    D+  T ++F   +        L      +            G  ++L  
Sbjct: 178 ELHPAGQQDDGDIGNTEKVFLGQVQAFKARGGLRSALLNMGAMVFTIEAEFNGMFVNLPW 237

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALRMYLF 246
            L+  +++  + K+  +++       +         +     +F
Sbjct: 238 ALEHAKVLEGQLKEATQELNGYVPEGLPFEFKWSSRFHKSALIF 281



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 22/114 (19%), Gaps = 18/114 (15%)

Query: 231 IIRSSRQTYALRMYLF------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL-- 282
                +       Y F                   T   ++       +     L R   
Sbjct: 366 DFSKPKSRIEDFKYRFGGFTTPDKKWEGSDAGVYSTAAEVIEELGNRNIPFLKALARRAD 425

Query: 283 ASSGSAILKL---------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327
                +   +           +   V  DG +   L     + TGR S      
Sbjct: 426 IHKDLSTYFIVTDEDTGESKGMLTLVGPDGIIHHQLHM-VRTITGRLSSSDPNL 478


>gi|229472433|gb|ACQ72731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R     + G+ +V ADL+GIE R+LA        +  + +G    +        
Sbjct: 7   PSDGRFRELFKPTPGQVMVGADLSGIELRMLAHY------LARYDSGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R   K +  A  Y  G              L       K +   + +  A
Sbjct: 61  VNADKI-GISRKQVKTVTYAFLYGAGDVKI---GKSLDSSLSDKKAKAKGSEIRKAYVSA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                          +      +    
Sbjct: 117 IDGLGDLLAAVKSAGDRGFVKAIDQRK 143


>gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
 gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +     ++D   +++   T    
Sbjct: 1   MNFIAMDFETANHFPESACSLALVMVRDNKIVDRFYTVINPQMSFDARNIQVHQITADDV 60

Query: 52  ---AMPSDLLQY---LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++      L    ++  AHN+ F+  +      +   I+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARY-NIEEPHYLVIDTLATSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     AL+  
Sbjct: 120 LFEPELPNHKLDTVSDALDVE 140


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + +D  +++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 483 DAPEIEDVLTDFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVD 560


>gi|229472539|gb|ACQ72784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAKEKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 43/189 (22%), Gaps = 38/189 (20%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-----------------------LW 45
           ET     +   G+ A     VI L A       +                          
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D    +    ++ +           VAHN+ F+        K  G++      I T  LA
Sbjct: 475 DMLTDAPEVDEVFKKFEKWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELA 534

Query: 101 RTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           R          L   C  +      +          G  L+            Y     +
Sbjct: 535 RFLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQLND 594

Query: 152 HVQAWQLFG 160
            +     + 
Sbjct: 595 SMGQGDAYK 603


>gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST]
 gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST]
          Length = 969

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 15/123 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ ID+E            +   +     L   +   +   + D          L +  
Sbjct: 288 KEIAIDLE---------HHSYRSYQGFTC-LMQLSTRTKD-YIVDALALRDELHVLNEVF 336

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-NFS 119
            D   + V H S+ +    ++ LG+ +       T   AR        L+       N  
Sbjct: 337 TDPKKLKVLHGSVSDIEWLQRDLGLYL--VNMFDTGEAARVLQFSRIGLQFLLKHYCNID 394

Query: 120 EHL 122
              
Sbjct: 395 TDK 397


>gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58]
 gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 32/195 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL- 61
            + +D E        +   +       + L   A D       D        + LL  L 
Sbjct: 49  YVAVDTE------FMRENSYW----PDLCLVQVA-DSHEAAAIDPKAPGIDLTPLLNLLV 97

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            +E V+ V H    +  +     G          T + A   G               + 
Sbjct: 98  DNEDVLKVFHAGGQDIEIVHNLTGK--APHPMFDTQIAAMALGFG------------EQI 143

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L  +  KG+  +              +   +Y   DV    ++F +++   
Sbjct: 144 GYGNLVDAWLGVQLDKGARFTDWARRPLD------KRQIDYAIGDVTYLIKIFPKMLEEL 197

Query: 182 DGERDLWLLDQTIND 196
                   LDQ +  
Sbjct: 198 KKTGRGDWLDQEMER 212


>gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum DJO10A]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 31/146 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            + +D+ET         + ++G     E  ++       +                   +
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 69

Query: 45  WDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW----IC 95
            D      +    + +L            V HN  F+           I    +      
Sbjct: 70  ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTR-HIAGCGFACADYD 128

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R          L +  +    
Sbjct: 129 TMQISRALFPAQRHHRLADLIVRFGI 154


>gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
 gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 1   MSKLFIDIETRSP----------------------QPLPKVGVWAYAEQAVITLCAYAWD 38
           M+ + +D ET S                         L K     +     I        
Sbjct: 1   MNFVALDFETASHQRHSACSIALTVVKNSQIVDHYYSLIKPETEFFWRNVQIHGIT---- 56

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
           ++ V+         +   +  +   E  + VAHN  F+R + +       +  P  + +C
Sbjct: 57  EDDVQTAP--SFPEVWEKIKPFF-KENKLIVAHNLPFDRGVLQGCLDYYQLQQPHFQTLC 113

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHL 122
           T   +R          L   C  L      
Sbjct: 114 TVQSSRKLITEIPNHKLNTVCDHLGIRLDN 143


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 11/77 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-------DIPSKRWICTSVLARTNG 104
            +    ++++    V  VAHN+ F+        G+              + T  +A+   
Sbjct: 84  EIAQSFIEFIDGAEV--VAHNASFDISFMDHEFGLLRPKGPKTADICGILDTLAIAKYLH 141

Query: 105 LPS--SLKNACLALNFS 119
                +L   C      
Sbjct: 142 PGQKNNLDALCKRYGID 158


>gi|262212115|gb|ACY35674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            ++   R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSNSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|320586879|gb|EFW99542.1| DNA polymerase gamma [Grosmannia clavigera kw1407]
          Length = 1168

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 72/316 (22%), Gaps = 74/316 (23%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   +  T                    +++ + A  G   V AD+   E 
Sbjct: 669 PQVIPMGTVTRRAVENT-----WLTASNAKKNRVGSELKAMVKAPPGYSFVGADVDSEEL 723

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 724 WIAS-VVGDATFGLHGGNAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKVFNYGRIYG 782

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G +    +       L +      +T  +                    A K       
Sbjct: 783 AGLRFAAQLLRQFNPSLSEAETVSIATKLY-------------------LATKGTRTNRK 823

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
               +  WR    G      +  E FA   +    +    +              +    
Sbjct: 824 ALCKRPFWRG---GTESFVFNRLEEFAEQERPRTPVLGAGITEALMGRFISKGGYLTSR- 879

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KN 616
                                                  +Q+  +D   +L   M     
Sbjct: 880 -----------------------------------INWAIQSSGQDYLHLLIVAMDYLIR 904

Query: 617 ATKNGYDIVLTVHDEI 632
             K    + +TVHDEI
Sbjct: 905 RFKIDARLAITVHDEI 920


>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
 gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 55/245 (22%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + L   A  D+   +         P  L
Sbjct: 24  FVAIDTEFRRRDTFW---------------PEVALVQIATADQVWLIDPLPLTDTGP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
            + L+  T+  V H++  +  +F+  LG  +       T   A   G    L  A     
Sbjct: 67  AELLQKSTLTKVLHSAGEDLEVFQAWLG--VLPSPLFDTQKAAALLGYGFGLSYA----- 119

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 K+ E    ++     +                      Y  +DV    +++ RL
Sbjct: 120 ------KLVEAVCQVSLDKDETNSDWLVRP-------LTSAQCRYAAQDVTYLVDVYSRL 166

Query: 178 IPLSDGERDLWLLDQTIN-------------DRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           +  +  +  L  + +                   +++  + +  L  L+    ++  E  
Sbjct: 167 LGDAGTQGRLEWILEEGEGVSVGGRGPLAKFRNAWKLQPEALAVLYGLLDWREQQARERD 226

Query: 225 VKLTD 229
                
Sbjct: 227 RPRNW 231


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 45/160 (28%), Gaps = 43/160 (26%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAY--------AEQAVITLCA 34
           M ++ +D ET   +P                  L       Y        A    +    
Sbjct: 1   MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPDREIDAGAIEVHGIT 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
             +  +  +  D        +D L Y+R      + HN+ F+       L   G D P  
Sbjct: 61  NEFLADKPRFADLA------ADFLDYIR--GAELIIHNAPFDVGFLNHELQLMGADSPPI 112

Query: 92  R----WICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
                 I T V+A+        SL   C   +      ++
Sbjct: 113 GELCAVIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQREL 152


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRT-------EQSAM 53
           +F+D+ET    P              I     +       P +                +
Sbjct: 17  VFVDLETTGGSPAEHRITEIGV--VEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDEMV 74

Query: 54  PSD-----LLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
                   L   L +  +  + VAHN+ F+R   +      G        +CT  L+R  
Sbjct: 75  RDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLSRAL 133

Query: 104 GL---PSSLKNACLALNF 118
                   L         
Sbjct: 134 FPRETRHGLDALIERHGL 151


>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 389

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 53/193 (27%), Gaps = 32/193 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A   +   + D    +     LL  +R
Sbjct: 22  FVAVDTE------FMRETTYW----PKLCLIQVASPTQEA-VIDPLADNIDLEPLLVVMR 70

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           DE ++ V H +  +  +F     +    K    T V                        
Sbjct: 71  DERILKVFHAARQDVEIFNN---LKAMPKPLFDTQVA-----------GMAAGFG----- 111

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +     AL+ +  +  ID        A           Y   DV    +LF  L    +
Sbjct: 112 -EQIAYDALVRQMLRIEIDKSSRFTDWARRPLTDAQL-SYALADVTHLAKLFPILRERLE 169

Query: 183 GERDLWLLDQTIN 195
               L  +++ + 
Sbjct: 170 TSGRLAWVEEEMT 182


>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
 gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 35/181 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E             +Y     ++L   +  ++   +            L +   
Sbjct: 248 EIAIDLE--------HHDFRSYTGL--LSLMQISTREKDWIIDTLVPWRHKLEVLNEVFA 297

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D  ++ V H +  + I  ++ LG+ +       T   +                      
Sbjct: 298 DPKIVKVLHGAFMDIIWLQRDLGLYV--VGLFDTFYASTAL------------------- 336

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPL 180
                GK+L     K            A+       +    Y + D      ++  L   
Sbjct: 337 --QYAGKSLAFLLKKFVDFDADKKYQLADWRLRPLPEEMFYYARSDTHFLLYIYDMLRNE 394

Query: 181 S 181
            
Sbjct: 395 L 395


>gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
 gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 69  VAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
           VAHN+ F+   ++   +  G+D     + CT +L+R         SL      L     
Sbjct: 88  VAHNAAFDSRFWQSELRHAGLD-APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRT 145


>gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
 gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
          Length = 195

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 37/128 (28%)

Query: 1   MSKLFIDIE------------TRSPQPLPKVG-------------VWAYAEQAV-ITLCA 34
           M K+FID E            T     +   G             V    E A  I   +
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINSRGEEKVSFAKNFFFDVDYIEESAEAIHGFS 60

Query: 35  YAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
                E +K+  + ++   + S++   L+D   + +AHN  F+R      F +   ++  
Sbjct: 61  V----EKLKILSKGKKFKDLASEISSDLKDG--IFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 90  SKRWICTS 97
            K + CT 
Sbjct: 115 PKEFFCTM 122


>gi|169236009|ref|YP_001689209.1| hypothetical protein OE2740F [Halobacterium salinarum R1]
 gi|167727075|emb|CAP13860.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 18/169 (10%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           F DIET        V          +T  +     +   L      S + ++ LQ L D 
Sbjct: 88  FFDIETTGLDQHSSV----------VTTVSVHRGGDTTTLV---RGSDLTAERLQALLDA 134

Query: 65  TVMCVA-HNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
               VA  N   F+    +    + +     +      R   L   LK     L      
Sbjct: 135 --PMVASFNGKRFDAPFLEHHFDLSLD-SPHLDLMYPCRRLDLTGGLKQVERDLGVDRAE 191

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
               +G+  +  + + + D+      R      +         D  A R
Sbjct: 192 VDDVDGREAVRLWRRYAEDNDEAALDRLVTYNQYDTQNLQAILDAVAER 240


>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
 gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
          Length = 618

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 19/98 (19%)

Query: 1  MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDDEPVKL 44
          M  + ID ET + +      +  A+ E   I                    A     ++ 
Sbjct: 1  MKTIAIDFETANEERGSACSIGLAWIEDGEIVRVEERLIRPKDMRFSPFNIAVHG--IRP 58

Query: 45 WDRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK 81
           D  +    P  + +++ D      +AHN+ F+  + +
Sbjct: 59 ADVEDAPEFPDVMEEFIDDFHGATMIAHNAAFDFSVMR 96


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 26/141 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVK--------------L 44
            +  DIET         + ++          I   +   +                   +
Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKMRGGQEIDRFSTFINPHEKIPYHIQQLTNITDEMV 482

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK--RWICTSVLAR 101
            D  E      + ++++ D   + VAHN+ F+          I +P      + T  LAR
Sbjct: 483 VDAPELEPKLREFVEFIGDA--VLVAHNARFDIGFIQANCKAIGLPEVMNPVLDTLELAR 540

Query: 102 TNGLP---SSLKNACLALNFS 119
                     L         +
Sbjct: 541 FLHPSMKNHRLNTLSARYKIN 561


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 46  DRTEQSAMPSDLLQYLRDE--TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D    +     +   L +     + VAHN+ F+R   +   +  GI       +CT  L+
Sbjct: 71  DMVRGAPTFESIAPALFERLNGKLFVAHNASFDRGFLRSEFRRAGIAFDPD-VLCTVRLS 129

Query: 101 RTNGLP---SSLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
           R          L               +      LI +F +      P D  RA   +  
Sbjct: 130 RALFPGEKRHGLDALVERHALVPSDRHRALADADLIWQFWQRLPTLVPLDALRAQIERTT 189

Query: 157 QLFGE 161
           + +  
Sbjct: 190 RRYRL 194


>gi|328851794|gb|EGG00945.1| hypothetical protein MELLADRAFT_39474 [Melampsora larici-populina
           98AG31]
          Length = 1150

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 51/180 (28%), Gaps = 4/180 (2%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           LP+      +  +  +                  ++S + A  G  +V AD+   E  + 
Sbjct: 643 LPQVTVMGTVTRRATEKT-WLAAANAKKNKIGTELKSMVRAPPGYAIVGADVDSEELWIS 701

Query: 390 AWIAGED-WKIKAFANGEDIYVTTYAKAFNTPIDKVS--KEQRAIGKVMELALGYQGGAK 446
           + +         A A G      T +   +      +     R   KV   +  Y  G  
Sbjct: 702 SVMGDAQFGMHGATAIGWMTLEGTKSAGTDLHSKTATILGISRNEAKVFNYSRIYGAGVT 761

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
               +         +   N  +   +   +  +++   + ++   +   +  +    E +
Sbjct: 762 HAIQLLMKADPKTSKEEANQLAKKLYRSTKGLKNYRSEIFERRFWYGGTESFLFNKLEEI 821


>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
          Length = 544

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 46/180 (25%), Gaps = 36/180 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S +    +            L   + D     + D  +       L +   D
Sbjct: 119 IGVDLEHHSDRSYRGIT----------CLMQISTDKTD-YIIDTLQLWDHLQPLNKVFCD 167

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ +   +  + I  ++  GI +       T   A   G                   
Sbjct: 168 PNIVKIFQGADSDVIWLQRDFGIYV--VNLFDTLQAASLLGF------------------ 207

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPLS 181
              + K L                  A+       Q   +Y + D      +++R+    
Sbjct: 208 ---QKKGLYFLLQHYCQVHVNKKYQLADWRIRPLPQEMVKYAREDTHYLIYIYERMKQDL 264


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 16/98 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GI 86
           D  PV +   T +          +   +   L D  VM VAHN+ F+            +
Sbjct: 63  DPGPVHVHGLTAERLRGAPAFEQVADRIGALL-DGRVM-VAHNAQFDYDFLAHEFARARL 120

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEH 121
            +P  R +CT  L R    P    SL +        + 
Sbjct: 121 HLPVARRLCTLALNRRVEPPVAGLSLASLAAYYGVPQT 158


>gi|269836548|ref|YP_003318776.1| DNA polymerase B region [Sphaerobacter thermophilus DSM 20745]
 gi|269785811|gb|ACZ37954.1| DNA polymerase B region [Sphaerobacter thermophilus DSM 20745]
          Length = 730

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 21/97 (21%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA------MPSDLLQ 59
           +DIET         G  A + +A I + A A +    ++ D  +         +   + Q
Sbjct: 134 VDIETT--------GFDARSNRAEILVVALATNRGHREVLDVADLGEAGVLRTLTERIQQ 185

Query: 60  YLRDETVMCVAHNS-LFERILF---KKTLGIDIPSKR 92
              D  V+   HN   F+        +  G+ +   R
Sbjct: 186 I--DPDVIE-GHNLFNFDLPFLMERARQHGVTLAWGR 219


>gi|45188230|ref|NP_984453.1| ADR357Cp [Ashbya gossypii ATCC 10895]
 gi|44983074|gb|AAS52277.1| ADR357Cp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 74/277 (26%), Gaps = 12/277 (4%)

Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSGSAI 289
           +      R   +    I     +E    ++ S   +  + K+++     L R A   ++ 
Sbjct: 530 ANSPDFDRNVGYTAFRIPHPSSAEQRTTTLFSKPYMHFMDKNVLQSEYSLAREALKINSS 589

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS-GCVFQPQNLPRQERSEEILTQTIQALN 348
               T +        +     F         +     Q   +  +      +T+      
Sbjct: 590 GSYWTAARERIKTQHVVSKEDFPDQFAMVDGTPSRDDQVGAIIPKIIPMGTVTRRAVENT 649

Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408
                          +++ I+A  G   V AD+   E  + + + G+             
Sbjct: 650 WLTASNAKANRIGSELKTKIVAPEGYSFVGADVDSEELWIAS-LIGDSVFNIHGGTAIGY 708

Query: 409 YVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464
                 K   T +   +       R   K+      Y  G +    +       L +   
Sbjct: 709 MCLEGTKDAGTDMHTKTASILGCSRNEAKIFNYGRIYGAGVRFAAQLLKQFNPTLSEEQT 768

Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
              +   +E  +  +++H  +  ++     +  L   
Sbjct: 769 RATAERLYEATKG-KTYHSKIFKKFWFGGSESILFNK 804


>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria innocua Clip11262]
 gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
          Length = 928

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKKKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 28/145 (19%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVI-----TLC-----------AY-AWDDEP 41
             + +D ET    P   +  +G         +      +            A   +D+  
Sbjct: 15  RVIVVDTETTGLLPYDRIVTIGAVKIEGDDFLHQSLHLIFDPRKDSHPQAEAVHGYDNWM 74

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSV 98
            +  D     A P  + ++        VAHN+ F+    ++      +D+      CT  
Sbjct: 75  TRYQDLFSDLAAP--IRKWFDWAD-EIVAHNADFDMRYVQREFRKAEVDMLPHPVFCTME 131

Query: 99  LARTN--GLPSSLKNACLALNFSEH 121
            +R    G  + L +    +  S  
Sbjct: 132 RSREIWSGQSAKLDDCLARIGLSRI 156


>gi|229472185|gb|ACQ72607.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472199|gb|ACQ72614.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472315|gb|ACQ72672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342203|gb|ACY54612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKDAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11]
 gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11]
          Length = 392

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 62/229 (27%), Gaps = 30/229 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A   E   + D   +          +RD++V  V H +  +  +    LG  
Sbjct: 37  PKLCVIQMA-GTEMAFIVDALAEGLDLEPFFDLMRDDSVTKVFHAARQDIEII-YHLG-G 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G   S                    K   AR  K S  +     
Sbjct: 94  LIPAPLFDTQVAAMVCGFGDS------------ISYDQLVYKVTGARIDKSSRFTDWARR 141

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN----DRGYRIDL 203
                         Y   DV   R+ F+ L      +     +   +        YR D 
Sbjct: 142 PLTAKQLD------YALADVTHLRDAFQFLKANLAEQNRTHWVQDEMTVLTSVATYRADP 195

Query: 204 DLVLKLQELIAQERKKL--DEDIVKLTDGIIRS---SRQTYALRMYLFL 247
           D   K  +L  ++  +L    ++    +   ++    R        ++ 
Sbjct: 196 DQAWKRLKLRVRKPVELAVMMEVAAWRETEAQNRDVPRSRVIKDDAIYE 244


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRS---PQPLPKVGVWAYAEQAVITL-----------CAYAWDDEPVKLWDRT 48
            +  D+ET                  +   I              +Y   +      D  
Sbjct: 418 FVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDRFNELINPEKDISYKVQELTGITNDLI 477

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
           +      ++L    +     + VAHN+ F+        K + I+  +K    T +LAR  
Sbjct: 478 KDKPTIEEILPKFMEFVGDSVLVAHNAEFDIGFINQKCKEMNIEFKNKSV-DTLMLARIL 536

Query: 104 GLPS---SLKNACLALNFS 119
                   L N    L   
Sbjct: 537 LPHLKRFKLNNLTKELGVP 555


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 37/197 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE--------------PVKL 44
            + +D+ET    P    + ++G         + + A   +                   L
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITEAML 91

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                   +    L+++ D   + VAHN+ ++    K      G   P+ R + T+ LAR
Sbjct: 92  LPAPSIEQVLPSFLEFVSDA--VLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAALAR 149

Query: 102 TNGLP-----SSLKNACLALNFSEHLT---------KMEEGKALIARFCKGSIDSPPYDC 147
              L        L         +   T          ++    LI R     +D+     
Sbjct: 150 RVLLRDEVPNRKLGTLAAYFRAATTPTHRALDDARATVDVLHGLIGRLGGHRVDTIGEAI 209

Query: 148 TRANHVQAWQLFGEYCK 164
             A  V   Q    +  
Sbjct: 210 EFARAVTPTQRRKRHLA 226


>gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 240

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 37/153 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           + ++ +D ET         G     E   + L                       A+   
Sbjct: 2   LREIVLDTETTGT---EAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQRPVSEGAFNVH 58

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-------DIPS 90
                 L D+   + +  +LL +L D     V HN+ F+                  I  
Sbjct: 59  GLSDAFLADKPVFAEIVGELLAFLADGR--LVIHNAPFDVGFLNMEYARLGANAPPPIQL 116

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFSEH 121
           +  + T  +AR     +  +L   C        
Sbjct: 117 EDVVDTLPMARRKHPGAANNLDALCARYGIDNT 149


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
           bacterium]
          Length = 1428

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 25/141 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITL-CAYAWDDEP----------VKLWDR 47
            L  D+ET    P    + ++G         +    +     E               D 
Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGS-EVLGTYSTFVKPEKELSAMITSLTGITEDM 476

Query: 48  TEQSAMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
             ++    ++L       E  + VAHN+ F+        KK  G D      I T  LA+
Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWE-MPCIDTLALAK 535

Query: 102 TN--GLPSSLKNACLALNFSE 120
           +       SL N    L    
Sbjct: 536 SLFRSKSYSLDNVVKRLKLGH 556


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 8/62 (12%)

Query: 64  ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGLP-----SSLKNACLA 115
              + VAHN+ F+    K      GI  PS   + T  LAR            L      
Sbjct: 128 PGTVLVAHNAPFDVRFLKAACARHGIPWPSPAVLDTLQLARRLVPRGEVRNHRLDTLARV 187

Query: 116 LN 117
             
Sbjct: 188 FG 189


>gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group]
 gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group]
 gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group]
 gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         I   A+    + V L D       +       L 
Sbjct: 25  IGFDCE---GVDLCRHGALC------IMQIAF---PDAVYLVDAIEGGKELIEACKPALE 72

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            E V  V H+   +        GI +     + T +     
Sbjct: 73  SEYVTKVIHDCKRDSEALYFQFGIKLH--NVMDTQIAYSLL 111


>gi|148262460|ref|YP_001229166.1| exonuclease-like protein [Geobacter uraniireducens Rf4]
 gi|146395960|gb|ABQ24593.1| exonuclease-like protein [Geobacter uraniireducens Rf4]
          Length = 277

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 26/186 (13%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIET     L + G         IT  A                 A   D+ +Y     
Sbjct: 89  LDIETTG---LSRSGNI-------ITTIALYDGRNIRHYVHGKNLEAFKEDIQRY----- 133

Query: 66  VMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            + V +N   F+    +  L I +P         L R+ G    LK     L       +
Sbjct: 134 QLLVTYNGKGFDVPFIESCLKISMPQAHI-DLMHLLRSLGFKGGLKGCEKQLGLERGGLE 192

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
             +G                 D     +V+A +    Y   DV     L      L   E
Sbjct: 193 GVDGY---------FAVLLWRDYQDNGNVKALETLLAYNIEDVVNLETLMIAAYNLKLEE 243

Query: 185 RDLWLL 190
                +
Sbjct: 244 TPFSDI 249


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 36/141 (25%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58
           +D+ET        +    V+    +  +        ++        E+   P  +     
Sbjct: 26  VDVETTGLARDDRIVSAAVYRLDARGEV--------EDHWYTVVNPERDPGPVWIHGLTS 77

Query: 59  ------QYLRD---------ETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
                    RD         E  + VAHN++F+  +  +       + P K+ +CT  L+
Sbjct: 78  EALEGAPLFRDVAEEFATRLEGRVLVAHNAVFDWQMIAREYARARSEAPVKQRLCTIALS 137

Query: 101 RTNGLP---SSLKNACLALNF 118
           +  GLP     L++       
Sbjct: 138 KELGLPLPNHKLESLAAHFGV 158


>gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
 gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
          Length = 153

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
          + + +D ET    PL             I        ++ VK     E+  M  +  +++
Sbjct: 3  NIIVLDTETTGLNPLTD----------RIITIGLWHVNKFVKFVSNDEKE-MLENFWKFI 51

Query: 62 RDETVMC-VAHNSLFERILFK-KTLGIDIPSKRW 93
           +  +   +  N  F+    K +++   I  + +
Sbjct: 52 SEHEISKLIGFNINFDWTFLKLRSMKYGIKIRYF 85


>gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088]
 gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 24/107 (22%)

Query: 6   IDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +D E     T  P    K  +   A    I+L       +PV + D +        L   
Sbjct: 30  LDTEFVRERTYYP----KPALVQLAGAGHISLV------DPVAVTDASA-------LSSL 72

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
           L  E  + V H+   +  +F+  LG  I    W  T V A   G   
Sbjct: 73  LESERTLKVVHSGSEDLEVFQAWLGCPIKG--WFDTQVAAALLGYGY 117


>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL J1-023]
          Length = 928

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKKKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1412

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 23/140 (16%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEP----------VKLWDRT 48
            +  D+ET    P    + ++G        ++   +     +               D  
Sbjct: 402 FIVFDLETTGLNPKEDEIIEIGAIKMKGNEILETFSSFVKPQKELSSLITSLTGITEDML 461

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLART 102
             +     +L       E  + VAHN+ F+        KK  G D      I T  LA++
Sbjct: 462 SGAGTIKQVLPEFTKFAEGGILVAHNASFDYGFIRNSVKKYFGGDWE-MPCIDTLALAKS 520

Query: 103 N--GLPSSLKNACLALNFSE 120
                  SL N    L    
Sbjct: 521 LYRAKSYSLDNVVKRLKLGH 540


>gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +     ++D   +++   T    
Sbjct: 1   MNFIAMDFETANHFPESACSLALVMVRDNKIVDRFYTVINPQMSFDARNIQVHQITADDV 60

Query: 52  ---AMPSDLLQY---LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++      L    ++  AHN+ F+  +      +   I+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARY-NIEEPHYLVIDTLATSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     AL+  
Sbjct: 120 LFEPELPNHKLDTVSDALDVE 140


>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 681

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 32  LCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           L   +   E   + D  +    +   L +  +D     V H +  + I  ++  GI +  
Sbjct: 248 LMQISTRTED-YIVDTFKLWDHIGPHLRELFKDPKKKKVMHGADHDIIWLQRDFGIYV-- 304

Query: 91  KRWICTSVLARTNGLPS-SLKNACLAL 116
                T   +R   L   SL+      
Sbjct: 305 CNLFDTGQASRVLKLERKSLEFLLKHY 331


>gi|158289252|ref|XP_311006.4| AGAP000139-PA [Anopheles gambiae str. PEST]
 gi|157018965|gb|EAA06413.4| AGAP000139-PA [Anopheles gambiae str. PEST]
          Length = 1135

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 13/194 (6%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           +P+      +  + ++      + A         +R+ + A  G +LV AD+   E  + 
Sbjct: 739 IPQVVVCGTLTRRAMEPTWMTASNAQ-RERVGSELRAMVQAPPGYRLVGADVDSQELWIA 797

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE----QRAIGKVMELALGYQGGA 445
           + + G+                +  KA  T +  V+ +     R   KV+  A  Y  G 
Sbjct: 798 SVL-GDAGTGLHGGTPFGWMTLSGTKATRTDMHSVTAQAVGISRDHAKVLNYARIYGAGQ 856

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------YPEFAVKDKL 498
           +  + +       L       K+T  F   +   ++ L  + +           A +   
Sbjct: 857 QFAERLLKQFNPTLTGAEARSKATKMFTLTKGRRTYRLREELRDQYPTQPARSTAYEALG 916

Query: 499 IGTACELVKKAWRA 512
           +  AC         
Sbjct: 917 LARACSRPVGELFE 930



 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS----- 97
           +L      +     L +      V  + HN+ ++R   ++   ++  + R++ T      
Sbjct: 230 QLIPLEADTPTDERLHR----PRV-VIGHNASYDRARVREQYWVEPTALRFLDTMSLHVC 284

Query: 98  ---VLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD----CTR 149
              + +    +  S K        +SE  +                +     D     T 
Sbjct: 285 VSGITSYQRAMLKSSKQLPAEDAGWSEQSSLNNLADVYALYCGGPPLAKSQRDTFVEGTL 344

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDLV 206
            +    +     YC  DV AT  + +RL PL             + + G     ++ +  
Sbjct: 345 QDVRADFDSLMSYCAADVRATGAVLQRLWPLFRERFPHPATLAGMLEMGSAYLPVNGNWT 404

Query: 207 LKLQE-LIAQERKKLDEDIV 225
             L E  +A E   L+    
Sbjct: 405 RYLTEADLAFEDLDLESKHQ 424


>gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
 gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           E   + D              + ++ V+ V H +  +  +     GI         T V 
Sbjct: 48  EDAVVVDTLAPGIDLKPFFDLMANDDVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 106 AMVLGYGDS 114


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 4   MKKKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 54

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 55  PAFIQELTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 114

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 151


>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 928

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGIAPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++           
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++   ++ D   + VAHN+ F+        + LG    +   I T  L+RT
Sbjct: 481 DAPEIEEVLTEFKAWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSANAVIDTLELSRT 538

Query: 103 NGLP---SSLKNACLALNFS 119
                    L          
Sbjct: 539 INTSYGKHGLNFLAKKYGVE 558


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 2   SKLFIDIETR---SPQPLPKVGVWAYAEQAVITLCAY-----AWDD-------EPVKLWD 46
             L  D ET    S   +  + V   A   V+          AW D        P  + +
Sbjct: 4   KILVFDTETTGFRSDDEVLTLAVVDGAGATVVDGMYAPVRKNAWPDAEKINRISPAMVVN 63

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                A  ++L +   D   + V +N  F+  L  +  GI I +       + 
Sbjct: 64  CPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQ-SGIRIQNPNRHDVMLA 115


>gi|46579404|ref|YP_010212.1| hypothetical protein DVU0991 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603041|ref|YP_967441.1| hypothetical protein Dvul_1998 [Desulfovibrio vulgaris DP4]
 gi|46448818|gb|AAS95471.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563270|gb|ABM29014.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
 gi|311233226|gb|ADP86080.1| hypothetical protein Deval_0916 [Desulfovibrio vulgaris RCH1]
          Length = 272

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 28/187 (14%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQSAMPSDLLQYLRDE 64
           +DIET         G+      A IT  A  +D   V+         A   D+L Y    
Sbjct: 87  VDIETT--------GMAWPM--AHITSIAL-YDGVTVRTYVHGENLEAFADDILPY---- 131

Query: 65  TVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             + V  N   F+    +++ GI +          +A    L   L+ A           
Sbjct: 132 -RLLVTFNGRSFDAPFIERSFGIRLR---------MAH-LDLRPVLRAAGYTGGLKRIEH 180

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
            +  G+  +      +         R   V+A +    Y   DV +  +L          
Sbjct: 181 SLGMGRGDLEGVDGFTAVLLWQHYERTGDVRALETLLAYNVEDVLSLEQLAVFAYNRHLA 240

Query: 184 ERDLWLL 190
           E     +
Sbjct: 241 ELPPLPV 247


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
          Length = 1480

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 40/154 (25%), Gaps = 43/154 (27%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---YAWDDEPVKLWDR-----TEQSAM 53
             +F D+ET    P          E   I       Y +     K  D       +    
Sbjct: 432 KMVFFDLETTGLSP----------ELDEIIEFGAIEYNFKTGERKKIDILIKPKAKLKDF 481

Query: 54  PSDL----LQYLRDE-----------TVMC----VAHNSLFERILFKKT---LGIDIPSK 91
              L     + L ++            ++     VAHN+ F+          LG      
Sbjct: 482 TKKLTNINEEMLENKPGIEVAFKQINQIIKDAILVAHNANFDYTFLSHWSQKLGYGKLEN 541

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEHL 122
             I T  ++R          L +    +N S   
Sbjct: 542 TIIDTLTISRIIYPELKSHRLGSLAKRVNISYDP 575


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 55  SDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTNGLPSSL 109
            +L   +       +  AHN+ F+  + KK     GI IP    + T  L        SL
Sbjct: 71  QELWPTIEHYISGQVLAAHNTSFDLDVLKKVSAHYGITIPITGVVDTFSLTHL-----SL 125

Query: 110 KNACLALNFS 119
              C  L+  
Sbjct: 126 DETCKVLHVD 135


>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
 gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
          Length = 535

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69
           T     L      +Y  Q  + L   +  D    + D     +    L +   D  ++ +
Sbjct: 259 TEFAVDLEHHSYRSY--QGFVCLMQISTRDAD-YIVDTLALRSELWTLNEVFSDPKIIKI 315

Query: 70  AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112
            H +  + I  ++   I +       T   AR    P  SL   
Sbjct: 316 LHGADSDIIWLQRDFAIYV--VNMFDTGQAARLLQFPRFSLSYL 357


>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 149

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 18/122 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +  +D+E            +             +  +    +     +S M + L ++  
Sbjct: 20  EFAVDLE---------HHSYRSFRGFTCV-IQVSTRERDFVVDALALRSKMRAHLARHFE 69

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS------LKNACLAL 116
           D T   V H +  +    ++  GI +       T   AR   LPS       L +A  AL
Sbjct: 70  DATKQKVMHGADMDVQWLQRDFGIYV--VNMFDTGQAARVLELPSKGLGAFYLTDAAYAL 127

Query: 117 NF 118
             
Sbjct: 128 KH 129


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 28  AVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
             + L    +          + D  +    P+ L    +D  V+ + H++  +  +F++ 
Sbjct: 39  PQVALVQLCFCGGGATGTAWMIDPLKIED-PAPLANLFKDAGVIKILHSASEDLEVFQRW 97

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           LG  +       T   A   GL   L    + L  
Sbjct: 98  LG--VLPLPLFDTQKAAALVGLDFGLGYRSMVLEL 130


>gi|148807530|gb|ABR13568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 160

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 8/115 (6%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVGSRKQIAERLEGVGVKFKLQTEKGAIIANEKVLEGIDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
            ++++       DGR+ G +   GA  TGR +        +P          ++ 
Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAPYGXECRSF 156


>gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
 gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 53/188 (28%), Gaps = 32/188 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E      +     +         L   +       +   +     P  L   L D
Sbjct: 35  LALDTE-----FIRTDTFYPIGA-----LLQISEGTGCFLIDPLSIDDFSP--LTALLTD 82

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V H+   +  +F++     +  +  I T + A        L     +L +     
Sbjct: 83  PAIVKVLHSCSEDLEVFERLF--QVLPQPLIDTQIAA-------GLDGYGFSLGYQ---- 129

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           KM E    I      +  +              +    Y   DV    E++++L    + 
Sbjct: 130 KMTEALLQIHVAKGETRSNWLQRP-------LTESQIHYAALDVAYLPEMYQQLKQSLES 182

Query: 184 ERDLWLLD 191
           +     L 
Sbjct: 183 KGRWQWLL 190


>gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 235

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 34/152 (22%), Gaps = 43/152 (28%)

Query: 3   KLFIDIETRS----PQPLPKVGV-----WAYAEQAV---------------ITLCAYAWD 38
            + +D+ET         + ++G          +Q                 +T       
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQFQQLVNPLRPIPRQITTLTGIT---- 89

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW 93
                + D      +    + +L            V HN  F+           I    +
Sbjct: 90  --DAMVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTR-HIAGCGF 146

Query: 94  ----ICTSVLARTNGL---PSSLKNACLALNF 118
                 T  ++R          L +  +    
Sbjct: 147 ACADYDTMQISRALFPAQRHHRLADLIVRFGI 178


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 47/167 (28%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-------QAVIT---------------------LCA 34
            + +D ET   +P    G     E          I                        +
Sbjct: 101 FVVVDTETTGLRP----GPDRVIEVAGVRMRNGEILDTFQSLVHPERRIPPFIVRFTGIS 156

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSK 91
                 P  L D  +   +  D L+++       V HN  F+        + LG+  P +
Sbjct: 157 ------PEMLADAPKARDIMPDFLRFIE--GATLVGHNLSFDVNFLTHEAQLLGLPFPVE 208

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARF 135
               T +L+R          L      L    H      G A +   
Sbjct: 209 GL-DTILLSRRLLPGLKRFKLDMVAQYLQIQTHNRHRALGDAQVTAD 254


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 28/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT---------LCAYAWDDEPVKLWDRTEQ 50
            +  DIET          +   A   +   I            +  +    +      + 
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQLINPGISIPYHITEITSITNEQV 481

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLA 100
                   +    ++++ D   + VAHN+ F+    K+     L ID+     I T  +A
Sbjct: 482 ANQPKIDEVIGKFVEFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLE-CSVIDTLQMA 538

Query: 101 RTNGL---PSSLKNACLALNF 118
           R          L +   AL  
Sbjct: 539 RDLFPDFKKYGLGDLNKALGL 559


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA 100
           + D  +   +  + +++      + VAHN+ F+    KK     GI+      I T  LA
Sbjct: 548 VIDAPKIEEILPEFMKFCE--GAIMVAHNAEFDMSFIKKNCKDQGIE-REFTIIDTVALA 604

Query: 101 RTNGLPSS---LKNACLALNFS 119
           R      +   L     ALN S
Sbjct: 605 RILLPNLNRFKLDTVAKALNVS 626


>gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2]
 gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 36/123 (29%)

Query: 3   KLFIDIETRS----------------PQPLPKVGVWAYAEQ------AVITLCAYAWDDE 40
            +F+D ET                     L KV    Y+        A +        DE
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDEDLNLKKVFNQYYSVDHMSRSAAKVHGLTVEILDE 61

Query: 41  PVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWI 94
                  +          ++   L D  +  + HN  F+    K      G +   K   
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDSVI--IGHNISFDIRFLKAEFERLGPEYVPKDKF 113

Query: 95  CTS 97
           CT 
Sbjct: 114 CTM 116


>gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 23/132 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + I  ++  GI I       T   +R   L   SL++    
Sbjct: 292 LREVFKDPTKKKVMHGADRDIIWLQRDFGIYI--CNMFDTGQASRVLKLERNSLEHLLHH 349

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                               C  + +    +          ++   Y + D      ++ 
Sbjct: 350 Y-------------------CGVTANKEYQNGDWRLRPLPHEMLR-YAREDTHYLLHIYD 389

Query: 176 RLIPLSDGERDL 187
            +        +L
Sbjct: 390 LMRTQLLSMAEL 401


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 25/137 (18%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVITL-----------CAYAWDDEPVKLWDRTE 49
           F+DIET         + ++G+  +     +              +   ++      +   
Sbjct: 15  FLDIETTGGNSARDRITEIGI-RFWRAGEVVGEWQTLLNPETRISPFIENFTGISNEMVA 73

Query: 50  QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNG 104
            + +  ++   L    +  + VAHN+ F+    K   + LG  + S + +CT  L+R   
Sbjct: 74  DAPLFEEVADELEAQLKGKVFVAHNARFDYGFIKSEFRRLG-RLFSAKVLCTVKLSRRLY 132

Query: 105 L---PSSLKNACLALNF 118
                 ++         
Sbjct: 133 PEFRRHNMDALIARHGL 149


>gi|310765107|gb|ADP10057.1| DNA polymerase II [Erwinia sp. Ejp617]
          Length = 787

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMP 54
           +  + +DIET     L  +G+         +       ++      D        +  + 
Sbjct: 152 LKWVSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASQIDFHLEYVDSRPQLL 207

Query: 55  SDLLQYLR--DETVMCVAHNS-LFERILFKKT---LGIDIPSKR 92
             L  +    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 208 EKLNAWFARHDPDVL-IGWNLVQFDLRVLQKHADRYGIPLRLGR 250


>gi|262212393|gb|ACY35813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 14/141 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R   +A+ G+ +V ADL+GIE R+L+          A  +                 DK+
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHY-------LARYDTYFGDNLLNGDIHQLNADKI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A     G +            L       K     E + +A      
Sbjct: 66  -GITRKLVKTVTYAFLCGAGNEKI---GYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSD 121

Query: 485 ---MQDQYPEFAVKDKLIGTA 502
                           + G  
Sbjct: 122 LLSAVKSAANRGFVKGIDGRK 142


>gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 337

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS 107
                 +L ++ +  V+ VAHN  F+    + +     IDI     +CT  +        
Sbjct: 199 EEKMEHILSFIEESDVI-VAHNVNFDMKFIRNSFANAKIDIGKIGTMCTMEMH-----GG 252

Query: 108 SLKNACLALNFSEHL 122
           SL      L      
Sbjct: 253 SLSACSKRLGIQRKT 267


>gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS 107
                 +L ++ +  V+ VAHN  F+    + +     IDI     +CT  +        
Sbjct: 205 EEKMEHILSFIEESDVI-VAHNVNFDMKFIRNSFANAKIDIGKIGTMCTMEMH-----GG 258

Query: 108 SLKNACLALNFSEHL 122
           SL      L      
Sbjct: 259 SLSACSKRLGIQRKT 273


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 47  RTEQSAMPSDLLQYLR--DETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLA 100
             +     + +  +L   D  ++  AHN+ F+        ++  GI   +  ++ T  +A
Sbjct: 486 VAQGKEEEAAVRAFLDFCDGKIL-AAHNASFDMGFMSIALERY-GIP-NTITYVDTLPMA 542

Query: 101 RTNGL---PSSLKNACLALNFSE 120
           RT        +LK          
Sbjct: 543 RTLIPDIARHNLKKLASYFKIDM 565


>gi|195579078|ref|XP_002079389.1| GD22040 [Drosophila simulans]
 gi|194191398|gb|EDX04974.1| GD22040 [Drosophila simulans]
          Length = 1078

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 83/335 (24%), Gaps = 54/335 (16%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            P+      +  + ++      + + P       +RS + A  G +LV AD+   E  + 
Sbjct: 707 CPQVVACGTLTRRAMEPTWMTASNSRP-DRLGSELRSMVQAPPGYRLVGADVDSQELWIA 765

Query: 390 A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           +     +  GE               +  +   +     V    R   KV+  A  Y  G
Sbjct: 766 SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV-GISRDHAKVINYARIYGAG 824

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               +T+               K+   F   +  + +                       
Sbjct: 825 QLFAETLLRQFNPTFSASEAKAKAIKMFSITKGKQVY----------------------- 861

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                           ++              +    R             R   I   S
Sbjct: 862 --------------SSYEASRLAIQR--NRTVAEVFHRPNWQGGTESAMFNRLEEIATGS 905

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNATKNG 621
             R  +   +   +          +           +VQ+ + D   ++   M+    + 
Sbjct: 906 QPRTPFLGGRLSRALEADTGPDQEQRFL--PTRINWVVQSGAVDFLHLMLVSMRWLMGSH 963

Query: 622 YDIVLTVHDEIVSETPDT---PYFSVGTLCSLMTK 653
               L+ HDE+     +           + +LMT+
Sbjct: 964 VRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 998


>gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b]
 gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b]
          Length = 385

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A      E   L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAVPGTGAEDAVLVDPLAGDLSM 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
           + L    RDE+V+ V H +  +  +F   +   +       T V A   G          
Sbjct: 67  APLYDLFRDESVVKVFHAARQDLEIF--FVDAGVIPAPLFDTQVTAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K    +  K S  +        +         +Y   DV   R+++
Sbjct: 117 ----EQVGYETLVRKIAKEQLDKTSRFTDWSRRPLTDAQ------KKYALADVTHLRDIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L            +
Sbjct: 167 EFLARKLAQSDRQKWV 182


>gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe]
          Length = 777

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 38/183 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
            ++ +D+E              Y   +  + L   + + E   + D  E       L   
Sbjct: 238 KEIAVDLE-----------HHDYRSFRGFVCLMQIS-NREKDWIVDTLELREELEALNVV 285

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +  ++ V H +  + I  ++  G+ +       T               A   L F  
Sbjct: 286 FTNPNIIKVFHGATMDIIWLQRDFGLYV--VNLFDT----YY---------ATKVLGF-- 328

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLI 178
                 EG  L     K            A+       +   +Y + D      ++  L 
Sbjct: 329 ------EGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLR 382

Query: 179 PLS 181
              
Sbjct: 383 NEL 385


>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
          Length = 901

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 23/132 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + I  ++  GI I       T   +R   L   SL++    
Sbjct: 281 LREVFKDPTKKKVMHGADRDIIWLQRDFGIYI--CNMFDTGQASRVLKLERNSLEHLLHH 338

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                               C  + +    +          ++   Y + D      ++ 
Sbjct: 339 Y-------------------CGVTANKEYQNGDWRLRPLPHEMLR-YAREDTHYLLHIYD 378

Query: 176 RLIPLSDGERDL 187
            +        +L
Sbjct: 379 LMRTQLLSMAEL 390


>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
 gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
          Length = 879

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 15/117 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S + ID+E             +Y     + L      D+   +   +    M   L    
Sbjct: 336 SIVAIDVE--------HHSTQSYR--GFVCLVQITGADDDWVIDPFSIFDEM-WRLNDVT 384

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLAL 116
            D  ++ V H +  + +  ++  G+ +       T   A    L    SL +     
Sbjct: 385 TDPRILKVMHGAESDILWLQRDFGVYV--VNLFDTLKAADVLCLSCGHSLSSLVRHF 439


>gi|16081956|ref|NP_394366.1| DNA polymerase II [Thermoplasma acidophilum DSM 1728]
 gi|10640184|emb|CAC12036.1| DNA polymerase (PolB), large chain related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 54/205 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           +  L  D+E      + +  V  Y +   +   + ++  + V      E+  +    +  
Sbjct: 156 LKVLSFDVE----NEINRENVEDYGKIL-VIGYSVSFQGKTVTGSLSGEEQDILRSFVDL 210

Query: 61  L--RDETVMCVAHNS-LFERILFKKT---LGIDIPSKR-------------------WIC 95
           +   D  V+   +N   ++  + KK     GI +   R                      
Sbjct: 211 IRAEDPDVI-TGYNIDGYDIPVIKKRMDRYGIKLEIGRDGSIPRRIMNQFWRVHGRLISD 269

Query: 96  TSVLA--RTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T   +  R       SL      L        + EGK  I R                  
Sbjct: 270 T-WWSVKRILHPKHESLDYVANML--------LGEGKDNIDRLHIE-----------DEW 309

Query: 153 VQAWQLFGEYCKRDVEATRELFKRL 177
            +  +    YC +D + T  +F++L
Sbjct: 310 KKRREEVIAYCIKDADLTLRIFEKL 334


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 53/460 (11%), Positives = 116/460 (25%), Gaps = 84/460 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPV--KLWDRTEQS----------- 51
           +DIET             Y E+  IT  A Y +D   V  ++                  
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIYKFDGHEVVDQVISLVNPERPIQPFVVGLT 54

Query: 52  --------------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                          +   +L+  +D   + VAHN+ F+  + +   + LG +   +   
Sbjct: 55  GINNDMLRNAPKFYEIAKRILEITQD--CILVAHNAKFDYRILRTEFRRLGYEYERETL- 111

Query: 95  CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           C+  L++         SL     AL                                  +
Sbjct: 112 CSVELSKKLLPGHASYSLGKLTKALGIPISS----------------------RHRADGD 149

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            +   +LF    ++DV+    +   +        D  L+               V  + +
Sbjct: 150 AIATVKLFKLLLQKDVDKEI-IKANIKTKPKSSLDTKLIRIVEELP----SSTGVYYMHD 204

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
              +         ++       +S      R     +  +            +++     
Sbjct: 205 DDGEIIYVGKSKNIRKRLNQHFTSESVK-SREMQNEVYAVTHEATG----NELVALLKEN 259

Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331
           Q  K L      +   ++     L +    +G L+         +T   +          
Sbjct: 260 QEIKKLKPKYNRALKRSVFNY-GLYQTYDDNGYLKLYYSKNQTKKTPITTFTNKN----Q 314

Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391
            +   + I+ +    LN            +  ++ C  A   ++ V      I+A +  +
Sbjct: 315 ARSFMDRIIEEFGLCLNLTSISNSDSACFNYSIKKCFGACVSEESVEVYNKRIQAIIDKY 374

Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431
                  I      E    +         +     +    
Sbjct: 375 SFSNQNMIVVDRGRETSEKSALLIENGVFMGVGYFDLNHQ 414


>gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 952

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 46/153 (30%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTE-----QSAMP 54
           M  + +D+ET    P          E+A I    A       +   D        +  +P
Sbjct: 1   MEWIIVDLETTGLDP----------ERAEILEIGALRVRGGEI--VDTFHTLVRPERPIP 48

Query: 55  SDLLQY--LRDETV--------------------MCVAHNSLFERILFKK---TLGIDIP 89
            ++ +   L D  V                        H+ +FER          G+ + 
Sbjct: 49  DEITRLTGLSDADVAGAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQ 108

Query: 90  SKRWICTSVLARTNGL---PSSLKNACLALNFS 119
               +CT  LAR          L+     L   
Sbjct: 109 PGDGLCTLSLARILAPRLMSHRLEYLARRLRLR 141


>gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 234

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 32/148 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------------WDDEPVKLW 45
           M ++FID ET   +P  K+G     E   + + +                  ++  +++ 
Sbjct: 1   MRQIFIDTETTGLEP--KLG-HRIIEIGAVEMMSRRLTGRRFHHYLNPEREIEEGALQVH 57

Query: 46  DRT-----EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLGI-DIP-----SKRW 93
             T     ++      + + L   +    + HN+ F+       LG+ ++P         
Sbjct: 58  GITSEFLLDKRKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPALCECCHSV 117

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
             T  +A+    G  +SL   C      
Sbjct: 118 TDTLKMAKELFPGKRNSLDALCERYEVD 145


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 70  AHNSLFERILFKK---TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
           AHN+ F+  + KK     GI IP    + T  L        SL   C  L+  
Sbjct: 88  AHNTSFDLDVLKKVSTHYGITIPITGVVDTFSLTHL-----SLDETCKVLHVD 135


>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
 gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
          Length = 512

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 53/183 (28%), Gaps = 33/183 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S++ +D+E              Y   Q  + L   +   +   +     +S +   L   
Sbjct: 244 SEIAVDLE-----------NHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSV 292

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             + ++  V H S  + +  ++  GI +       T   AR   +             + 
Sbjct: 293 FANPSIRKVIHGSDRDILWLQRDFGIYV--CNLFDTGQAARVLRM--------ERFGLAF 342

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L+  FC  + D             + ++   Y + D      ++ ++  +
Sbjct: 343 ----------LLQTFCGVTPDKRYQLADWRLRPLSAEMLK-YAREDTHYLLYVYDKMKGM 391

Query: 181 SDG 183
              
Sbjct: 392 LRD 394


>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
 gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
 gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
 gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
 gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
 gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
 gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
 gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
 gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
 gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 35/150 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEP----------- 41
            +L +D ET       + G     E  ++ L              + E            
Sbjct: 212 RQLIMDTETTGFN---EAGGDRIVEVGIVELVGRKFTGNILHVYINPEKHMDDAVIQVHG 268

Query: 42  ---VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRW 93
                + D+ + + +   + +++    V  +AHN+ F+                  S + 
Sbjct: 269 ISNAFVADKPKFAEVAQQIYEFMAGSEV--IAHNAAFDMKFLNMEFNRAGLSNFANSVKV 326

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEH 121
             T  LA+    G  +SL      L   + 
Sbjct: 327 TDTLALAKQMYPGQKNSLDALVKRLGVGQK 356


>gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 46  DRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           D    +  P    +++  +    +  VAHN  F+    K   +  G++ P   + CT   
Sbjct: 61  DTAHAAPFPEVWREIIPLIE--GLPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCTLRA 118

Query: 100 ARTN---GLP-SSLKNACLALNFS 119
           +R      LP   L+   L   + 
Sbjct: 119 SRLAFGRDLPNHQLQTVALRCGYD 142


>gi|255647529|gb|ACU24228.1| unknown [Glycine max]
          Length = 345

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 26/193 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         + +   A+ D  V L D       +       L 
Sbjct: 62  IGFDCE---GVDLCRKGT--------LCVMQLAFPD-AVYLVDAIEGGEELIIACKPALE 109

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL----NF 118
              +  V H+   +        GI + +   + T +           K            
Sbjct: 110 SNYITKVIHDCKRDSEALYFQFGIKLNNA--VDTQIAYSLIEEQEGRKRLRDDYISFVGL 167

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                    G   I+   K  +      D     H    +        DV     +++++
Sbjct: 168 LADPR--YCG---ISYDEKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQM 222

Query: 178 IPLSDGERDLWLL 190
           +     ER LW L
Sbjct: 223 MEKL-NERSLWYL 234


>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 32/125 (25%)

Query: 2   SKLFIDIE-----T----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA 52
            ++ +D+E     T         +  +                        L D     +
Sbjct: 282 KEIAVDLEHHSYRTFQGITCLMQISTITTD--------------------YLIDTLTLRS 321

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN 111
               L +     +++ V H +  + +  ++   + +       T   AR   LP  SL +
Sbjct: 322 ELHRLNEIFTKPSILKVFHGADMDILWLQR--DLSLYVVNMFDTHQAARQLNLPYLSLAH 379

Query: 112 ACLAL 116
                
Sbjct: 380 LIKKY 384


>gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
 gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
          Length = 188

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK----KTLGIDIPSKRWICT 96
           P  +WD      + S L   LR+   + +AHN+ F+    +    K    D P+  + CT
Sbjct: 59  PSDVWDAPALPEVLSSLYPILREVD-LVIAHNASFDMGALRKAIVKYDLFDFPTIEYGCT 117

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHL 122
             L+R          L      LN     
Sbjct: 118 VKLSRKLYPGLPNHKLNTMAEHLNVPFIH 146


>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 41/154 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAY------------------AWDDEP 41
            ++ +D ET     +   G   Y       I                         D E 
Sbjct: 8   RQIILDTETTG---MNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPDRLVDPEA 64

Query: 42  VKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG------ID 87
           +++   T++        S +  + ++++R      +AHN+ F+        G        
Sbjct: 65  IQVHGITDEFLRDKPSFSQIADEFIEFIR--GAELIAHNAPFDVSFMDYEFGKLGLNFKT 122

Query: 88  IPSKRWICTSVLARTN--GLPSSLKNACLALNFS 119
                   T  +AR    G  ++L   C      
Sbjct: 123 ADICGITDTLAMARDLFPGKRNNLDVLCDRYGID 156


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDEPVK---------------LWD 46
            DIET    PL    +   A   E+  I    + ++ +  V                + D
Sbjct: 489 FDIETTGFSPLKNRIIEIGAVRVEEGRIVDKFS-SFVNPDVPIPFEIEKLTGINDNMVLD 547

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
             +   +  + L++ R    + VAHN+ F+    K   +  G++      + T  LAR  
Sbjct: 548 APKIDRVLPEFLEFCR--GAVMVAHNAGFDISFIKENARQQGLEFNPT-VLDTVSLARVL 604

Query: 104 GLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               +   L      L  +                            T    V+  ++  
Sbjct: 605 LPNLNRFKLDTVAKELKIN---------------LANHHRAVDDAGATAEIFVRFIKMLK 649

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
           E    D+    EL +  + +       + +     +   R++L  +
Sbjct: 650 ERDIFDLSQLNELSRMTVEMIRK-MPTYHIIIIAKNDVGRVNLYRL 694


>gi|148909222|gb|ABR17711.1| unknown [Picea sitchensis]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 72/263 (27%), Gaps = 40/263 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L + G         + +   A++D  V L D  E   +        L 
Sbjct: 37  IGFDCE---GVDLARYG--------RLCIMQLAFED-AVYLVDAVEGGHLLMQACKPALE 84

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              V  V H+   +        GI +     + T +         SL        ++   
Sbjct: 85  SVYVTKVVHDCKRDSEALYFQYGIKLN--NVVDTQIA-------YSLIEEQEGRKWAPDE 135

Query: 123 TKMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQL------FGEYCKRDVEATRELFK 175
                G             +            + W+         +    DV     ++ 
Sbjct: 136 YISFVGLLADPRYCGVSYAEKEEVRTLLREDPKFWEHRPLTYMMKKTAADDVRFLLHIYN 195

Query: 176 RLIPLSDGER--------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
           ++I   +            L+     +ND     D   +  + + +  E + L+E+I++ 
Sbjct: 196 KMIEKLELHSLWQLAVRGSLYCRCFCVNDNDCN-DWPPLPPIPDNLIIEGQTLEEEILQS 254

Query: 228 TDGIIRSSRQT--YALRMYLFLI 248
            D  + +  +         L + 
Sbjct: 255 VDVPVGNMGRVIGKKGASILSIK 277


>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
 gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 46/178 (25%), Gaps = 31/178 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60
           + +D E  S        + AY E   + L          +L D         +       
Sbjct: 37  VALDTEADS--------LHAYPE--KVCLLQITTPLGD-ELIDPLSGINLDPLLDTF--- 82

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA-CLALNF 118
                   + H S ++  L +K        K    T + +R  G     L +     L  
Sbjct: 83  ---GGHELIMHGSDYDLRLLRKHHAFV--PKAIFDTMLASRLLGHTQFGLVHLVAHYLGV 137

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           +        G        +    +P  +    N     +   +  K D+E    L   
Sbjct: 138 TLEK-----GSQKADWAKRPL--TPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWH 188


>gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 199

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           +  + ID ET + Q      V  A+ E   +T                   A     P  
Sbjct: 4   LKTIAIDFETANEQRGSACSVGLAWIEDGRVTRVEERLIRPREMRFSGMNIAIHGIRPEH 63

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +  + +       +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 64  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 121

Query: 101 RTNGLP---SSLKNACLALNFS 119
           +          L      L   
Sbjct: 122 QRIWPHFLSHRLNLIAEHLGLR 143


>gi|229472393|gb|ACQ72711.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 8/140 (5%)

Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
            R  +I   G KLV +DLAGIE RV A   G       +  G    +           DK
Sbjct: 12  CRELLITRPGWKLVDSDLAGIELRVFAHYLG------RYDEGRYADILLNDDIHQVNADK 65

Query: 424 VSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           +    R   K +  A  Y         +  S    D  +        +  +     E   
Sbjct: 66  I-GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEIRRAYLDAIPGLERLV 124

Query: 483 LWMQDQYPEFAVKDKLIGTA 502
             ++ +         + G  
Sbjct: 125 EAVKTKAKVDRSLRAIDGRK 144


>gi|328872117|gb|EGG20484.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 347

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 47/187 (25%), Gaps = 25/187 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQYL 61
           +  D+E            W   +   ++L      +  V ++D      +A    L   L
Sbjct: 146 VAFDLE-----------GWEMGKNGEVSLVQIGLKNGRVFIFDIMVLGHNAFKHGLKDLL 194

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
             + ++ + H+   +  +        +         +                       
Sbjct: 195 ESKIILKIVHDCRRDSEIL--YHRYQVTLDHVYDIQIAHALLQKKKEGNVPIRRFGL--- 249

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ------LFGEYCKRDVEATRELFK 175
             ++ +  A      +             N++  W+         +YC  DV     ++ 
Sbjct: 250 -AELTDLYAPKPYAQQAINVKHKGRDLFKNNLDIWRQRPLPPTIIDYCALDVIVLLPIYN 308

Query: 176 RLIPLSD 182
            L P   
Sbjct: 309 ILTPQLH 315


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 25/137 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAV---ITLCAYA------WDDEPVKLWDRTEQ------ 50
           +D+ET    P     +     Q         +++       D  PV +   T +      
Sbjct: 25  VDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPGVDPGPVHVHGLTRERLAGAP 84

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGL 105
               +   L + +RD   + VAHN+ F+                     CT  L+R   L
Sbjct: 85  QYQDVAGTLDELVRD--RVLVAHNARFDWGFLAAESDRARAPLSVDRRLCTLALSRRLDL 142

Query: 106 PSS---LKNACLALNFS 119
           P S   L          
Sbjct: 143 PVSDLRLATVAAHWGVQ 159


>gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
 gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 202

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDDEPVKL 44
           M  + ID ET + +      V  A+ E   I                    A     ++ 
Sbjct: 1   MKTIAIDFETANEERGSACSVGLAWIEDGQIVRVEERLIRPRDMRFSPFNIAVHG--IRP 58

Query: 45  WDRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLG---IDIPSKRWICT-SVL 99
            D  +    P  + +++ D      +AHN+ F+  + + +     +  P   ++C+  + 
Sbjct: 59  RDVEDAPEFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKYRLSYPDLSYLCSVKIA 118

Query: 100 ART--NGLPSSLKNACLALNFS 119
                + +   L      L   
Sbjct: 119 RHVWPHLVSHKLNVIAHHLQLR 140


>gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
          Length = 272

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 28/149 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVI-------------TLC----AYAWDDEPVKL 44
            ++ +D ET               E A +              L       + +   V  
Sbjct: 8   RQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQREISEEATAVHN 67

Query: 45  WDRTE--QSAMPSDLLQYLRD--ETVMCVAHNSLFERILF-KKTLGIDIP----SKRWIC 95
              ++     + + + Q + D  +    + HN+ F+      +   + +P          
Sbjct: 68  ITLSQLVDKPIFAQVAQQIFDFIKGAELIIHNAKFDVGFLNAEFARVGLPNVETICEITD 127

Query: 96  TSVLAR--TNGLPSSLKNACLALNFSEHL 122
           T  +A+   +G  +SL   C  L      
Sbjct: 128 TLEMAKNLYHGQKNSLDALCNRLGVDRSK 156


>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D  + L D   Q          + D+ ++ V H +  +  +    LG  
Sbjct: 37  PQLCLIQVASSDVTI-LIDPMAQDINLQPFFDLMIDKKIVKVFHAARQDIEII-YHLGGV 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V     G                           I + C G         
Sbjct: 95  I-PSPLFDTQVAGSICGFG------------------DSISYDQIVQRCTGHHLDKSSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           T  +     +    Y   DV   RE++  L    + ++    ++  +
Sbjct: 136 TDWSCRPLSEKQLLYALADVTYLREVYLVLKKQLEEKKRTHWMNDEM 182


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 23/142 (16%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTE------ 49
            +  DIET    P    + ++G      + +I   +   + E   P ++   T       
Sbjct: 399 YIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDRFSAFVNPEVPIPEEIIKLTNITDDMV 458

Query: 50  --QSAMPSDLLQYLR-DETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
                + + L ++L        VAHN+ F+        + L ++      I T   AR  
Sbjct: 459 KDAELIDTVLPRFLEFCGDCTMVAHNAKFDVGFLTQKARQLELEFLP-SVIDTLYWARVL 517

Query: 104 --GLPS-SLKNACLALNFSEHL 122
              L   +LK      N S   
Sbjct: 518 ITDLKRFNLKALANYFNISLDN 539


>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
 gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
          Length = 402

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 75/234 (32%), Gaps = 50/234 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID+E         VG + Y+ +A +       +D    L D      +P   L  L +
Sbjct: 40  VAIDVE-------RAVG-YRYSHRAYLV--QIRREDVGTFLID---SGTLPD--LSILNE 84

Query: 64  E--TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACL-ALNFS 119
                + + H++  +    +   G++IP      T + AR  G     L   C   L  +
Sbjct: 85  PLNNAVWILHDADQDIASLRMC-GLEIP--ELFDTMLAARLLGFQRFGLAAVCEQILGVT 141

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--- 176
                                +    D +     + W     Y   DVE   +L+++   
Sbjct: 142 LDK------------------NHQSDDWSTRPLPRPW---LRYAALDVELLTDLYEKMSH 180

Query: 177 -LIPLSDGERDLWLLDQTINDRGYRIDLD---LVLKLQELIAQERKKLDEDIVK 226
            L   +  E         +     + D +    +  + ++ ++    + E++ K
Sbjct: 181 SLFKANRWEWAQQEFHNILTRPTKKPDSEPWRNLRGMGKIRSRRHLAILEELWK 234


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 25/182 (13%)

Query: 3   KLFIDIETR----SPQPLPKVGVWAYAEQAVITLCAYAWDDE----------PVKLWDRT 48
            +F+D+ET     S   + +VGV       V    +   D +               D  
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEVGPTGVTRWSSL-IDPQQPIPSFIQQLTGITNDMV 73

Query: 49  EQSAMPSDLLQYLRDE--TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
             +     +   L +     + VAHN+ F+R   +   +  G+       +CT  L+R  
Sbjct: 74  HGAPTFESIAPALYERLNGKLFVAHNASFDRGFLRSEFRRAGLAFDPD-VLCTVRLSRAL 132

Query: 104 GLP---SSLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   L               +      LI +F +      P +  RA   +  + +
Sbjct: 133 FPGEKRHGLDALVERHALVPSDRHRALADADLIWQFWQRLPTLVPLEALRAQIERTTRRY 192

Query: 160 GE 161
             
Sbjct: 193 RL 194


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 27/178 (15%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQSAMP- 54
           ID+ET    P     + ++G+   ++   I     TL     D  P  +   T +  +  
Sbjct: 7   IDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGPTHIHGITARDVLDA 66

Query: 55  ---SDLLQYLRDE--TVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL--ARTN 103
               ++  YL         VAHN+ F+        ++      P    +CT  L  +   
Sbjct: 67  PTFQEVAPYLIGSLAGRTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQLSSSYLR 126

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGK-----ALIARFCKGSIDSPPYDCTRANHVQAW 156
           G    LK+ C+A N          G       L+  +   +    P+     +  + W
Sbjct: 127 GASRKLKDCCVAANVPHADEHTALGDARAVAGLLNYYLVNTDRPVPWSAVLESTRRHW 184


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 41/150 (27%), Gaps = 48/150 (32%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----------PVKLWD-------- 46
           +D+ET         G+ A AE   I   A    +            PV            
Sbjct: 13  VDLETT--------GLGARAEITEIG--AVRVREGRLCEEFSSLVRPVGPIPPAITALTG 62

Query: 47  -----RTEQSAMPSDLLQYLRDET------VMCVAHNSLFERILFKKTLG---IDIPSKR 92
                      + + L ++L          V+ VAHN+ F+    ++      +  P  R
Sbjct: 63  ITPAMVRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSLPWPRVR 122

Query: 93  WICTSVLART-----NGLPSSLKNACLALN 117
            + T  LAR            L        
Sbjct: 123 VVDTLALARLALPRPIVRNHKLATVASYFG 152


>gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +      +D   +++   T +  
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 52  ---AMPSDLLQY---LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++  +   L    ++  AHN+ F+  +      +  GI+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARY-GIEEPHYLVIDTLASSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     AL+  
Sbjct: 120 LLEPELPDHKLDTVSEALSVE 140


>gi|7510239|pir||T31635 hypothetical protein Y57A10A.m - Caenorhabditis elegans
          Length = 1171

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 76/295 (25%), Gaps = 60/295 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---DRTEQSAMPS--- 55
           S LF DIE                    +   A A   +    W       +S +P    
Sbjct: 137 SILFFDIE-------------LVVRDGTLPTLAIALGRDAWYGWCSDRLIYESEIPEIPT 183

Query: 56  --DLLQYLRDE-TVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
             DL+         + + HN  F+R    +    I+    R++ T  ++        + +
Sbjct: 184 KADLIPIGEIGMEKVIIGHNVGFDRARCREAYQSINGSKIRFMDTMSMS---IPMYGMAD 240

Query: 112 ----ACLALNFSE-HLTKMEEG--KALIAR--------------------FCKGSIDSPP 144
                    +              K  +++                    F K ++ +  
Sbjct: 241 HQQSLYEMYDVETNDSHSDWMNAWKGRVSKNSLVAVHDHLYPDKAINAEGFSKKTMRASF 300

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG-YRIDL 203
                    + +Q    YC RD     E++ RL P              + + G   + +
Sbjct: 301 VKDPIEQIREDFQPLMSYCARDNILCAEIYFRLWPEFIKRFPHPATLSGMLNMGNVYLPI 360

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           +   K+      +  +  +                  +   L    G ++    +
Sbjct: 361 NSYWKMFYEKNVQTCEQKKTAATRKIIE-----SARLVAKRL-DDEGEEIGKTQK 409


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEP----------VKLWDRT 48
            + +D ET         + ++G   +     +         +               D  
Sbjct: 409 YVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDRFGTLVKPDKEIPFEVSKLTGITLDMV 468

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK----KTLGIDIPSKRWICTSVLART 102
           + +      L  LR+     + VAHN+ F+    K    K L +++ + + + T   AR 
Sbjct: 469 KDAPDARQALAALREFIGDAVLVAHNAAFDLSFLKVGFRKYLQVEV-TNQVVDTLGTARV 527

Query: 103 NGLP---SSLKNACLALNFS 119
                    L          
Sbjct: 528 LLPHLKNHKLDTLVKEFKIE 547


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 13/117 (11%)

Query: 55  SDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLPSSL 109
            ++L+  R   E  + VAHN+ F+        +  GI       I T  LAR        
Sbjct: 491 EEVLRLFREFSEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYPEF-- 548

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                         K   G +L                      +A +    +   D
Sbjct: 549 ----KRFGLGVLSKK--FGVSLEQHHRAIYDAEATGHLAWIFVKEAMEHHKMFLHED 599


>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 21/171 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E            +   +     L   +  +    +     +S +   L +  
Sbjct: 27  KEFAVDLE---------HHSYRSFKGFTC-LMQISTRERDFVVDVLALRSHVRDALGKAF 76

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D   + V H +  +    +K  G  +       T   AR   LPS  K     L+    
Sbjct: 77  ADADKLKVMHGADNDVQWLQKDFG--MFVSCLFDTGQAARVLELPS--KGLAYLLHH--- 129

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                 G     RF        P       + +       Y    ++    
Sbjct: 130 ----YCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLKEALR 176


>gi|148652873|ref|YP_001279966.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
 gi|148571957|gb|ABQ94016.1| Exodeoxyribonuclease X [Psychrobacter sp. PRwf-1]
          Length = 237

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 28/139 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCA------------YAWDDEPVKL 44
           M+   +D ET      P +   AY       A I +               +        
Sbjct: 1   MTTYILDTETTGLVD-PHMTEAAYSIIAINNAKIEVIQAPRSKRFNPLKPISLGSMATSH 59

Query: 45  W---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
               D   +       L    +     V HN  ++  + K       P  + ICT  ++ 
Sbjct: 60  ICDEDVAHEPPHTEFRLP---NSVEYLVGHNIDYDMAVLKNAGVTHTP--KLICTKAMSS 114

Query: 102 TNGL---PSSLKNACLALN 117
                     L +     +
Sbjct: 115 YLLPTLESHKLVSLLYHFH 133


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 37/197 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE--------------PVKL 44
            + +D+ET    P    + ++G         + + A   +                   L
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAML 91

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                   +    L+++ D   + VAHN+ ++    K      G   P+ R + T+ LAR
Sbjct: 92  LPAPPIEQVLPSFLEFISDA--VLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAALAR 149

Query: 102 TNG-----LPSSLKNACLALN---------FSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                       L                   +    ++    LI R     + +     
Sbjct: 150 RVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGTVGEAI 209

Query: 148 TRANHVQAWQLFGEYCK 164
             A  V   Q    +  
Sbjct: 210 EFARAVTPTQRRKRHLA 226


>gi|283853436|ref|ZP_06370680.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283571156|gb|EFC19172.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 1007

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 54/178 (30%), Gaps = 41/178 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPVKLWDRTEQSAMPSDLLQ 59
           +D+ETR  +   +VG W  A Q      + A       DD  V       Q  +P +L Q
Sbjct: 837 LDVETR--RSAAEVGGWCNAHQ---MGISVAVLYDSRLDDFLVY-----RQEELP-ELYQ 885

Query: 60  YLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS--VLARTNGLPSSLKNACLAL 116
            L     + V  N   F+  +       D  +   +     V AR  G   SL     A 
Sbjct: 886 ALTALD-LIVGFNINRFDYKVLAGISPFDHRALPTLDILEKVHAR-LGYRLSLDGLAKA- 942

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                                    +   D               YCK+DV  TR+L+
Sbjct: 943 ------------------TLGTRKSATGLDALAWWKEGRLDEITAYCKKDVAVTRDLY 982


>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
 gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
           NSW150]
          Length = 233

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 39/155 (25%), Gaps = 34/155 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT----E 49
           M ++ +D ET     +         E   + L         +     P +L D       
Sbjct: 1   MRQVVLDTETTG---IGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQRLVDEGAFRVH 57

Query: 50  Q--SAMPSDLLQYLRD---------ETVMCVAHNSLFERILFKK-----TLGIDIPSK-R 92
              +    D      D              + HN+ F+                +    +
Sbjct: 58  GISNEFLQD-KPLFADVAEKFWRFISGAELIIHNAPFDVGFLNSELQLINWNKKLEVYCK 116

Query: 93  WICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
              T VLAR    G  +SL   C          ++
Sbjct: 117 ITDTLVLAREKYPGQRNSLDALCKRYGIDHFNREL 151


>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
 gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
          Length = 186

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 29/142 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYA-------WDD--------EPVKLWDRTEQ 50
           +D ET    P     +   A   V     ++        +         + V      E 
Sbjct: 11  VDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVRIPALIQKVHGISNEEV 70

Query: 51  SAMP------SDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLA 100
              P           Y+  +  + V HN+ F+        K+T    + +  +I T  ++
Sbjct: 71  EEAPDMGTVYERFRDYV--KGTVLVFHNANFDLTFLDMMAKETRNFPL-TNAYIDTLDIS 127

Query: 101 R-TNGLPSSLKNACLALNFSEH 121
           +   G P SLK  C  L   + 
Sbjct: 128 QEVFGRPHSLKWLCEKLGIRDK 149


>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 1353

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID+E             +Y       L   +  ++   + D          L     +
Sbjct: 485 VAIDLE--------HHSFHSYRG-FTCLL-QLSTREKD-YIIDPFALFDHLHVLNTITAN 533

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++ + H +  + I  ++     +       T V AR   +P    +    L
Sbjct: 534 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGG-ASLANLL 583


>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii GT1]
          Length = 1353

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID+E             +Y       L   +  ++   + D          L     +
Sbjct: 485 VAIDLE--------HHSFHSYRG-FTCLL-QLSTREKD-YIIDPFALFDHLHVLNTITAN 533

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++ + H +  + I  ++     +       T V AR   +P    +    L
Sbjct: 534 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGG-ASLANLL 583


>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
 gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
          Length = 1353

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + ID+E             +Y       L   +  ++   + D          L     +
Sbjct: 485 VAIDLE--------HHSFHSYRG-FTCLL-QLSTREKD-YIIDPFALFDHLHVLNTITAN 533

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
             ++ + H +  + I  ++     +       T V AR   +P    +    L
Sbjct: 534 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGG-ASLANLL 583


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 18/114 (15%)

Query: 2   SKLFIDIETR---SPQPLPKVGVWAYAEQAVITLCAYA------WDD-------EPVKLW 45
             L  D ET    S   +  + V   A + V+    YA      W D        P  + 
Sbjct: 4   KILVFDTETTGFRSDDEVLTLAVVDGAGKTVVDGM-YAPVSKKEWPDAEKVNRISPAMVA 62

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           D        ++L +   D   + V +N  F+  L  +  GI I +       + 
Sbjct: 63  DCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQ-SGIRITNPNRHDVMLA 115


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 24/144 (16%)

Query: 3   KLFIDIETRS---PQPLPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRT------- 48
            + +D+ET                      +    A   D +   P ++   T       
Sbjct: 28  FVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAML 87

Query: 49  -EQSAMPSDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT-SVLART 102
            +   +   L  +L      + VAHN+ F+    K   +  GID P    +CT  +  R 
Sbjct: 88  VDAPPIAQVLPAFLEFARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPAVLCTVRLARRV 147

Query: 103 NG----LPSSLKNACLALNFSEHL 122
                    SL      L  S   
Sbjct: 148 LSRDEAPRVSLGALAQLLGASTTP 171


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLP- 106
             +  +   ++ D   + VAHN+ F+        K  G++  +   I T  LAR      
Sbjct: 494 EQVIKEFHAFIGDG--IVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLELARLLYPTM 551

Query: 107 --SSLKNACLALNFS 119
               L   C   N  
Sbjct: 552 KNHRLNTLCKKFNIE 566


>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL J1-175]
          Length = 807

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 44/157 (28%)

Query: 1   MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAM 53
           M     + +D+ET         G  A  E   I   A  + +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PSDLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDI 88
           P+ +                  D         E  + VAHN  F+    ++ +   GI +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PSKRWICTSVLARTN---GLPSSLKNACLALNFSEHL 122
              + + T  LAR          L++     N     
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDK 148


>gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3]
 gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
          Length = 369

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 42/200 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L ID E     T                 A + L   A+D + + L D    + + S 
Sbjct: 24  KLLVIDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPLAVTNL-SL 66

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D +++ + H+   +  +F K         +   + + A   G+   L  A    
Sbjct: 67  FWALLTDSSIIKLLHSCSEDLEVFAK--NGACQPNKLFDSQIAAGLCGMGYGLGYA---- 120

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  K+ E    I      S                 +    Y   DV    EL+ +
Sbjct: 121 -------KLVEQTLDITLDKGESRTDWLKRP-------LSEAQLNYAANDVYYLYELYPQ 166

Query: 177 LIPLSDGERDLWLLDQTIND 196
           L+   + +  L  + +    
Sbjct: 167 LVDKLESQGRLDWVYEDGER 186


>gi|495452|gb|AAA56883.1| DNA polymerase [Bacillus phage SP82]
          Length = 86

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 21/105 (20%)

Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
               ++      ++ LS  +  D  +  +   +G + TGR S      Q  PR+  +  +
Sbjct: 1   EFRKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTL 59

Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLA 382
                                +  ++    +   +   +V  D +
Sbjct: 60  FQ------------------YNHEIKKMFNSRFGDDGVIVQFDYS 86


>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
 gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
          Length = 313

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 25/137 (18%)

Query: 6   IDIETRSPQPLPKVGVWAYA----EQAVIT-----LCAYAWDDEPVKLWDRTEQ------ 50
           +D+ET    P     +   A    +   +      L     D  PV +   T        
Sbjct: 7   VDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPGVDPGPVHVHGLTPALLAGKP 66

Query: 51  --SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS-VLARTNG 104
             S + ++L + L  +    VAHN+ F+        +  G+  P +R++CT     R + 
Sbjct: 67  RFSDVAAELGRVL--DGRTVVAHNAAFDASFLAAEARRAGLAPPLERFVCTLDFAGRLHL 124

Query: 105 LPSSLK--NACLALNFS 119
             + LK           
Sbjct: 125 STADLKLSTLAAHFGVR 141


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPREARHGLDALIERHG 149

Query: 118 F 118
            
Sbjct: 150 L 150


>gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 34/151 (22%), Gaps = 39/151 (25%)

Query: 4   LFIDIETRSPQPL-----------------------PKVGVWAYAEQAVITLCA--YAWD 38
           L  D+ET    PL                          G+      + I   +  YA +
Sbjct: 19  LSFDLETTGTNPLQARIVTSALVSIHGGSANSTELLADPGIEIPESASQIHGISTEYARE 78

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
                         +    ++ + D        +  N+ ++  + +      + S     
Sbjct: 79  HGEPH-------DDVLHKTIRAIYDGWERGQTLIVFNAAYDLTILRHLEPSFVCSGLVFD 131

Query: 96  TSVLARTNGL----PSSLKNACLALNFSEHL 122
             V+ R        P  L             
Sbjct: 132 PLVMGRALEPQRTGPRKLGTLVKRYGIQLDN 162


>gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 37/128 (28%)

Query: 1   MSKLFIDIE------------TRSPQPLPKVG-------------VWAYAEQAV-ITLCA 34
           M K+FID E            T     +   G             V    E A  I   +
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINFKGEEKVSFAKNFFFDVDYIEESAESIHGFS 60

Query: 35  YAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
                E +K+  + ++   + S++   L+D   + +AHN  F+R      F +   ++  
Sbjct: 61  V----EKLKILSKGKKFKDLASEISSDLKDG--IFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 90  SKRWICTS 97
            K + CT 
Sbjct: 115 PKEFFCTM 122


>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 34/153 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--------------------AYAWDDE 40
           + ++ +D ET         G     E   I L                      YA    
Sbjct: 7   IREIALDTETTGLD---ADGGDRIIEMGCIELIDRVFTGKVFHEYINPERDIPYYATKI- 62

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSK-----RW 93
                D  +     S++     D     + V HN++F+    K  L   I        + 
Sbjct: 63  HGITVDMLKDKPKFSEIADKFLDFIGNSVLVIHNAVFDIKFIKMELD-KIQKSYNSDFQV 121

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
           + T +LAR    G+ S+L   C   N S    K
Sbjct: 122 VDTLILARKKFPGVSSTLDALCKRFNISLQDRK 154


>gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56]
          Length = 197

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 25/140 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           M  + ID ET + Q      V  A+ E+  +T                   A     P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPED 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +     R      +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 61  VEDAPEFPEVMDEFHDDFR--GATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RTNGLP---SSLKNACLALN 117
           +          L      L 
Sbjct: 119 QRIWPHFLSHRLNLIAEHLG 138


>gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5]
 gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5]
          Length = 386

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 5/86 (5%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           +   + D   +          + +E V+ V H +  +  +      I         T V 
Sbjct: 48  DEAVVVDALAEGIDLKPFFDLMANEKVLKVFHAARQDIEIVWHLANIV--PHPVFDTQVA 105

Query: 100 ARTNGLPSSLKN---ACLALNFSEHL 122
           A   G   S+                
Sbjct: 106 AMVLGYGDSIAYDQLVGRITGHKLDK 131


>gi|311069195|ref|YP_003974118.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
 gi|310869712|gb|ADP33187.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
          Length = 208

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIET-RSPQPLPKVGVWAYAEQAVIT-----LCA------YAWDD-----EPVK 43
           M  + ID ET  S +           E + I      L        ++++      +   
Sbjct: 1   MRIVSIDFETANSSRNSACSLGMTIFENSSIVMNHEWLIQPKQNRFHSFNTALHGIDENM 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA 100
           + +      +  ++  YL +   + +AHN+ F+  + + T    G+D P   + CT  +A
Sbjct: 61  VANEPRFDELWPEIKPYLTNG--LVIAHNASFDISVLRSTLDDYGLDYPEFEYTCTLQMA 118

Query: 101 RTN---GLPSSLKNACLALNFS 119
           + +        L      +NF 
Sbjct: 119 KRHWKELESYKLSFLADRINFR 140


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP- 106
            A+  +L   L  +  + VAHN+ F+R   +   + +GI       +CT  L+R      
Sbjct: 80  EAIAPELFARL--DGKLFVAHNASFDRGFLRGEFRRVGISFDPD-VLCTVRLSRALFPSE 136

Query: 107 --SSLKNACLALNF 118
               L         
Sbjct: 137 KRHGLDALVERHAL 150


>gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           Ba4 str. 657]
 gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Ba4 str. 657]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 36/134 (26%), Gaps = 49/134 (36%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPV-----KLWDRTE 49
           M K+FID ET   +P              I    Y         +E V       +D   
Sbjct: 1   MKKIFIDTETTGLEP------------GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDY 48

Query: 50  QSAMPSDL-------LQYLRDETVMC---------------VAHNSLFERIL----FKKT 83
                  +       L+ L                      +AHN  F+R      F + 
Sbjct: 49  IEESAEAIHGFSVEKLKILSKGKKFKDLASEISSDLKNGIFIAHNVNFDRKFVTAEFNRL 108

Query: 84  LGIDIPSKRWICTS 97
             ++   K + CT 
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 39/149 (26%)

Query: 6   IDIE--TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV----------------KLWDR 47
           +D+E  T     +   G ++     +I L A    +  V                K+ + 
Sbjct: 422 VDLEDATYIVFDVETTG-FSNVYDTIIELAAVKIKNGQVIDTFERFSNPHRKLTAKIIEL 480

Query: 48  TEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRW 93
           T             S +  +   ++ D   + VAHN+ F+        K  GI++     
Sbjct: 481 THITDDMLVNAPELSDVIREFHDFIGDG--VVVAHNAAFDLGFLYVAYKNAGIEVRHPGI 538

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFS 119
             T  L+R         +LK      N  
Sbjct: 539 -DTVELSRLVNPGQKSHNLKTLTKKYNIE 566


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
          Length = 1498

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 31/143 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE---QAVIT-------------LCAY----AWDDEPV 42
            +  D+ET     +    +   A       I                      +  DE V
Sbjct: 461 YIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDRFSTFVNPKRPIPFQITQLTSITDEMV 520

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
             +   +   +    L++ +D   + VAHN+ F+    +   +   I+ P   ++ T  +
Sbjct: 521 MGYP--DIETILPQFLEFAKDG--VLVAHNAGFDVGFIEQNCRYQDIE-PHFVYVDTVAM 575

Query: 100 ARTNGLPSS---LKNACLALNFS 119
           AR      S   L     AL  S
Sbjct: 576 ARVLLPTLSKYKLNVVAKALGIS 598


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP---SSLKNACLALN 117
           +  + VAHN+ F+           G++  ++  I T  L+R          L       N
Sbjct: 503 KDTILVAHNASFDMGFLNTGYEKEGLEKTTQPVIDTLELSRLLHPHLKSHRLNTLAKRYN 562

Query: 118 F 118
            
Sbjct: 563 V 563


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 28/141 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRT------ 48
            + +D+ET    P    + ++G         +    A   D     P ++   T      
Sbjct: 17  FVVVDLETTGVTPDGAGITEIGAVKVRG-GEVVGEFATLVDPGVPIPPQIVALTGITPAM 75

Query: 49  --EQSAMPSDLLQYLR--DETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTS-VLA 100
                 +   L  +L      V+ VAHN+ F+    K      G + P    +CT  +  
Sbjct: 76  VRSAPRIEQVLPTFLEFVSGAVL-VAHNAGFDVSFLKAACQTHGYEWPKPTVVCTLKLAR 134

Query: 101 RTNG----LPSSLKNACLALN 117
           R  G        L        
Sbjct: 135 RVLGRQETRGHRLSTLASLFG 155


>gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
 gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
          Length = 227

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQPL------------------PKVGVWAYA--------EQAVITLCA 34
           M ++ +D ET     L                         Y         E   +   +
Sbjct: 1   MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPERDMPIEAFNVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK----KTLGIDIPS 90
             +               +    L +++D     V HN+ F+         +     +P+
Sbjct: 61  TEFLSGQPTFA------EIVGPFLDFIQDS--PLVIHNATFDVGFLNAELTRLGMRTLPA 112

Query: 91  KRWICTSVLA--RTNGLPSSLKNACLALNFS 119
            R I T VLA  R  G P+SL   C      
Sbjct: 113 ARAIDTVVLARRRFPGAPASLDALCRRFEID 143


>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
 gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 55/214 (25%), Gaps = 38/214 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC--- 113
            ++ L+D +V+ V H    +  +F  + G        + T ++A   G   S   A    
Sbjct: 66  FIELLQDASVLKVLHACGEDLEVFVNSFG--CMPFPMVDTQIMAAFLGHGLSTGFAALVD 123

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L      ++                                +   +Y   DV     L
Sbjct: 124 EYLGVELDKSE--------------------SRADWVARPLTDKQL-DYAAADVYYLWPL 162

Query: 174 FKRLIPLSD----GERDLWLLDQTINDRGY-------RIDLDLVLKLQELIAQERKKLDE 222
           + +L    +     +      D  +  RG         +D+  V +L+       K L  
Sbjct: 163 YFKLFAQVEAKDWWDAAQQESDLLMQKRGKTPNPDSAYLDIKGVWQLKRKQLAILKPLAT 222

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVD 255
             +        +       +    +    +    
Sbjct: 223 WRMNEALKRDLALNFVIKEQELWSIARFALKKPK 256


>gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 193

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLA 100
            D+     +  + + ++ D  +    H+  F+  +  +        ++    W+ T +L 
Sbjct: 66  VDKPSIGEVLPEFMTFIGDSMIT--GHHINFDLKMLDRHLRENYDCNLEGAPWLDTMLLH 123

Query: 101 RTN---GLPSSLKNA 112
           +        + L + 
Sbjct: 124 KLVMENNTSTQLDDL 138


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 39/153 (25%), Gaps = 38/153 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC------------------AYAWDDEPVK 43
            ++ +D ET          V+       I                       A D E + 
Sbjct: 9   RQIVLDTETTGMNQGSGA-VYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIA 67

Query: 44  LWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDI 88
           +   T++          +    ++++    +  VAHN+ F+                  +
Sbjct: 68  VHGITDERVANEPRFHQIAQQFIEFIDGAEI--VAHNANFDVSFMDHEFSMLPSKGPKTM 125

Query: 89  PSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
                + T  +A+        +L   C      
Sbjct: 126 DICDILDTLEIAKFLHPGQKNNLDALCKRYGID 158


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 26/138 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWD------------RT 48
           +F+D+ET                   I     +       P +                 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGV--VEIGPLGVSTWTSLVNPGQPIPPFIQQLTGISDAMV 73

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
             +   + L   L +  +  + VAHN+ F+R   +      G+       +CT  L+R  
Sbjct: 74  RDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERIGLAFNPD-VLCTVRLSRAL 132

Query: 104 ---GLPSSLKNACLALNF 118
                   L         
Sbjct: 133 FPRESRHGLDALIERHGL 150


>gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402
           065]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 36/134 (26%), Gaps = 49/134 (36%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPV-----KLWDRTE 49
           M K+FID ET   +P              I    Y         +E V       +D   
Sbjct: 1   MKKIFIDTETTGLEP------------GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDY 48

Query: 50  QSAMPSDL-------LQYLRDETVMC---------------VAHNSLFERIL----FKKT 83
                  +       L+ L                      +AHN  F+R      F + 
Sbjct: 49  IEESAEAIHGFSVEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRL 108

Query: 84  LGIDIPSKRWICTS 97
             ++   K + CT 
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|300858616|ref|YP_003783599.1| ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|300686070|gb|ADK28992.1| Ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|302206328|gb|ADL10670.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis C231]
 gi|302330885|gb|ADL21079.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276570|gb|ADO26469.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis I19]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 35/194 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             ID E        +   + Y ++A +           V +       A+   L + +  
Sbjct: 36  FAIDTE--------RASGFRYDDRAFLLQIR-RRQAGTVLIDPSVHPEAVTQHLGKAIN- 85

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
            +   + H +  +    ++   + +       T +  R  G+P  +L             
Sbjct: 86  -SHTWIIHAAPSDLPCLRE---LGLRPSNIFDTELAGRLMGMPRVNLAAMSE----EIVG 137

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
             + +G        +                  W     Y   DVE   +L   +  L D
Sbjct: 138 LTLLKGHGAEDWSRRPL-------------PIDW---LNYAALDVETLLDLADAMAELLD 181

Query: 183 GERDLWLLDQTIND 196
            +  L   +Q    
Sbjct: 182 SQGKLEWAEQEFEH 195


>gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
 gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 34/150 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT----E 49
           M ++ +D ET     +         E   + L         +     P +L D       
Sbjct: 1   MRQIVLDTETTG---IGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPERLVDEGAFRVH 57

Query: 50  Q--SAMPSDLLQYLRDE---------TVMCVAHNSLFERILF---KKTLGIDIPSKRW-- 93
                   D      D+             + HN+ F+        + +      + +  
Sbjct: 58  GISDEFLQD-KPLFADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCD 116

Query: 94  -ICTSVLAR--TNGLPSSLKNACLALNFSE 120
              T   AR    G  +SL   C       
Sbjct: 117 VFDTLTYARDKFPGQRNSLDALCKRFGIDH 146


>gi|17537597|ref|NP_496592.1| hypothetical protein Y57A10A.15 [Caenorhabditis elegans]
 gi|6433820|emb|CAB60771.1| C. elegans protein Y57A10A.15, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1072

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 55/235 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---DRTEQSAMPS--- 55
           S LF DIE                    +   A A   +    W       +S +P    
Sbjct: 137 SILFFDIE-------------LVVRDGTLPTLAIALGRDAWYGWCSDRLIYESEIPEIPT 183

Query: 56  --DLLQY--LRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
             DL+    +  E V+ + HN  F+R    +    I+    R++ T  ++        + 
Sbjct: 184 KADLIPIGEIGMEKVI-IGHNVGFDRARCREAYQSINGSKIRFMDTMSMS---IPMYGMA 239

Query: 111 N----ACLALNFSE-HLTKMEEG--KALIAR--------------------FCKGSIDSP 143
           +         +              K  +++                    F K ++ + 
Sbjct: 240 DHQQSLYEMYDVETNDSHSDWMNAWKGRVSKNSLVAVHDHLYPDKAINAEGFSKKTMRAS 299

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                     + +Q    YC RD     E++ RL P              + + G
Sbjct: 300 FVKDPIEQIREDFQPLMSYCARDNILCAEIYFRLWPEFIKRFPHPATLSGMLNMG 354


>gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum
           tuberosum]
          Length = 338

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 15/102 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLR 62
           +  D E      L             + +   A+ D  + L D  +   A+       L 
Sbjct: 56  IGFDCE---GVDL--------CRHGTLCIMQLAFPD-AIYLVDAVQGGEAVVQACKPALE 103

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
              +  V H+   +        GI +     + T +      
Sbjct: 104 SNYITKVIHDCKRDSEALYFQFGIKLH--NVVDTQIAYSLIN 143


>gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
 gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 45/173 (26%), Gaps = 55/173 (31%)

Query: 3   KLFIDIETRSPQP-----------LPKVGVWAYAEQAV---------------ITLC--- 33
            + +D ET                +  V     AE                  I      
Sbjct: 16  YIVLDTETTGLPDENGLPDIVTLGITVVSNREIAESVEFKTRPQKRISEEAQSIHGITNK 75

Query: 34  -AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIP 89
            A A+D    +         +   L   L       V HN+ F+  +        G+ +P
Sbjct: 76  QAAAFDSFDSQW------QQISEYLKHQL------IVIHNASFDWPILLDHVLRHGLAMP 123

Query: 90  -SKRWICT---SV-LARTNGLP-----SSLKNACLALNFSEHLTKMEEGKALI 132
             +   C+   ++  A+   LP      SL     AL   +   K +      
Sbjct: 124 EIQGVFCSQKAAIPWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKEDGLHGAK 176


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score = 44.3 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 28/140 (20%)

Query: 6   IDIETRSP---QPLPKVGVWAYAEQAVITLCAYAWDDE--------------PVKLWDRT 48
           +D+ET        + ++G     + AV+   +                    P  + D  
Sbjct: 32  VDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVADAA 91

Query: 49  EQSAMPSDLLQY--L-RDETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLART 102
             +++    L++  L   ++ + VAHN+ F+    ++            R + T  LAR 
Sbjct: 92  PIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLALARL 151

Query: 103 -----NGLPSSLKNACLALN 117
                      L        
Sbjct: 152 ALPRPLVRNHKLGTVASYFG 171


>gi|324506474|gb|ADY42763.1| DNA polymerase subunit gamma-1 [Ascaris suum]
          Length = 790

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 28/153 (18%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126
           + + HN  ++R   ++         R+  T  +A        + +  L L     L + E
Sbjct: 223 IVIGHNVAYDRSRVREQYLRKQTGTRFWDTMSMA---IPIYGMADHQLLLYEKNDLEEDE 279

Query: 127 EGKA-----------------LIARFCKGSIDSPPYDCTRANHV--------QAWQLFGE 161
            G +                 L  + C            ++  V          +Q   +
Sbjct: 280 RGHSGWVDDWKARVCKNSLAALHEKLCSQKSKLIVKKSMQSFFVNEPIEEIRDNFQDLVQ 339

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           YC  DV A  EL++ L P         +  Q +
Sbjct: 340 YCAEDVLACLELYQALYPEFVKRFPHPITWQGM 372



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 76/285 (26%), Gaps = 37/285 (12%)

Query: 202 DLDLVLKLQELIAQERKKLDE-DIVKLTDGIIRSSRQTYALRMYL----------FLITG 250
           D+D    + E+     ++ +E DI       + +      +   L          F    
Sbjct: 505 DIDNAETIAEVSRASLRRGEEVDIPNRAILDVINENIANGVGEVLLGEPACSIGAFDFHK 564

Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310
           +         +   L+  +     ++ IL        A   ++  S  V+     R    
Sbjct: 565 LPHPKGGNANVGDPLAK-DFHIEIEEGILR-------ATRYIDEFSAIVACKKTTRFWGN 616

Query: 311 FYGASRTGRWSGCVFQPQNL----PRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366
            Y A    + +  + +  N     P    +  +  + +  L           +    ++S
Sbjct: 617 -YRARFNEQVTVWLDEEGNEGAIAPSVIPAGTVTRRAVHKLWLTAINPKDNEMIGTGLKS 675

Query: 367 CIIASNGKKLVVADLAGI---------EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417
            +  S G  LV AD+            +  V    AG          G     +      
Sbjct: 676 MVECSEGWNLVGADVDSQEQWIAALLGDCAVGKHTAGATPFSNMLLAGNKADHSDLHSVV 735

Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462
              +       R   KV+  A  Y  G           GL  +Q 
Sbjct: 736 AKEV----GISRDKAKVLNYARLYGSGLNHAVEFLKQSGLADEQA 776


>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 33/137 (24%)

Query: 6   IDIETRSPQPLPKV-------------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS- 51
           +D+ET    PL                G+          L        PV +   ++   
Sbjct: 18  VDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSS----LVRARGGTGPVHIHGLSDYDV 73

Query: 52  -------AMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLAR 101
                   +  +L + L  +  + VAHN+ F+        +  G ++P    +CT  LAR
Sbjct: 74  RDAPGFADLVDELSELL--DGRILVAHNAAFDWAFLAAEARRAGRELPVSERLCTWHLAR 131

Query: 102 TNGLP---SSLKNACLA 115
              LP     L      
Sbjct: 132 GLELPTDNLRLGTLAEY 148


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
           D  +  A+  + L+++ D     +AHN+ F+    KK    LGI+ P + +I T   AR 
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGIN-PVRTYIDTLAFARA 519

Query: 103 NGLP---SSLKNACLALNFS 119
                    L       N +
Sbjct: 520 LEPHLKNHKLDTLTKKYNVN 539


>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
 gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 39  PQLGLIQL-FDGKQLSLIDPTELTDMTS-FVELLQDTSVLKVLHACGEDLEVFQNAFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142
                 + T ++A   G    L           L      ++                  
Sbjct: 95  CTPFPMVDTQLMAAFLG--HGLSTGFATLVEEYLGVELDKSESRT---------DWMARP 143

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
                          L   Y K   +  +  +   +   + +  +    + IND    +D
Sbjct: 144 LTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAV-QQESDLLVSKRIRDINDENVYLD 202

Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGID 252
           +    +L+       K L     +       +    +     L +   G+ 
Sbjct: 203 IKGAWQLRPAELAILKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLT 253


>gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. 230613]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 36/134 (26%), Gaps = 49/134 (36%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPV-----KLWDRTE 49
           M K+FID ET   +P              I    Y         +E V       +D   
Sbjct: 1   MKKIFIDTETTGLEP------------GEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDY 48

Query: 50  QSAMPSDL-------LQYLRDETVMC---------------VAHNSLFERIL----FKKT 83
                  +       L+ L                      +AHN  F+R      F + 
Sbjct: 49  IEESAEAIHGFSVEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRL 108

Query: 84  LGIDIPSKRWICTS 97
             ++   K + CT 
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 302

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 67/232 (28%), Gaps = 44/232 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWDRTEQSAMPSDL 57
            L+ID E               +    ++L     D      + V L D  +Q  + ++ 
Sbjct: 22  TLWIDTE----------VADYKSRNPRLSLIQVLDDPDDMSGDRVYLLDVLDQPDLVANF 71

Query: 58  LQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----RTNGL--PSSLK 110
           ++  +    +  V HN+ F+  L          +K   CT  +A              L+
Sbjct: 72  VEKIMVSTNIEKVFHNASFDVKLLGNK-----QAKNITCTLEIAKKIPYHLLPVQNYQLQ 126

Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR--DV 167
           +    L NF+                 +    +          ++   L   Y  +    
Sbjct: 127 SLATLLCNFNNI-------------DKQEQSSNWGRRPLSEEQIEYAYLDCIYLAQIHRR 173

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
               ++     P +     +      I ++   ++ +    LQE + +  + 
Sbjct: 174 LLDLQIESNPDPATVDITAINSRFSQIEEQWKLLNSEY-EHLQEQLKKAMQA 224


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
           D  +  A+  + L+++ D     +AHN+ F+    KK    LGI+ P + +I T   AR 
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGIN-PVRTYIDTLAFARA 519

Query: 103 NGLP---SSLKNACLALNFS 119
                    L       N +
Sbjct: 520 LEPHLKNHKLDTLTKKYNVN 539


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
          Length = 1445

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 35/147 (23%), Gaps = 37/147 (25%)

Query: 4   LFIDIETRSPQPLPKVGVWAYA---EQAVIT---------------------LCAYAWDD 39
           +  D+ET       +      A       I                             D
Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDRFNTFVNPERSIPPKITELTGIT----D 482

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
           + V+                +    + + +AHN+ F+        +  G++        T
Sbjct: 483 DDVRGAPLE--GEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEYNFTAI-DT 539

Query: 97  SVLARTNGL---PSSLKNACLALNFSE 120
            VL+R+         L      L   E
Sbjct: 540 VVLSRSLFPELKKHKLDIVAKHLGLGE 566


>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
 gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
          Length = 790

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 53/206 (25%), Gaps = 35/206 (16%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66
           D ET                +  I L   +   +   + D  +     + L +   D  +
Sbjct: 507 DTETY---------------RGFICLLQLST-PQENYIIDPFKIFGKMNKLNRLTTDPKI 550

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFSEHLTK 124
           + + H +  + I  ++   I +       T   A    LP  SL        N       
Sbjct: 551 LKIMHGACNDVIWLQRDFNIFV--VNLFDTREAAIVLNLPEQSLAKLVQKYFNIK----- 603

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPL-SD 182
                 L  RF     +           ++       +Y   D      L+  L      
Sbjct: 604 ------LNKRFQ--ISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEILS 655

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLK 208
            E     + Q +N+         V +
Sbjct: 656 KEDGRVKIIQVMNNGRETCLKQYVDR 681


>gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 25/157 (15%)

Query: 32  LCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           L   +   E   + D  +    +   L +  +D     V H +  + I  ++  GI +  
Sbjct: 155 LMQISTRTED-YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYV-- 211

Query: 91  KRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                T   +R   L   SL+                         C  + +        
Sbjct: 212 CNLFDTGQASRVLKLERNSLEFLLKHY-------------------CGVAANKEYQKADW 252

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                   +   Y + D      ++  +         
Sbjct: 253 RIRPLP-DVMKRYAREDTHYLLYIYDVMRMELHTMAK 288


>gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 37/149 (24%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           M  + ID ET    P         AE   I        D  +   +   +   P   +  
Sbjct: 1   MEFVVIDTETTGSSP------HKGAELIEIAG--VVVRDWEIIYEESFNELIKPKRHVPI 52

Query: 61  ------------LRDE---------------TVMCVAHNSLFERILFKKTL---GIDIPS 90
                       L D+                 + V  N+ F+           GI    
Sbjct: 53  SITMITGINNLMLEDKLPIEIVLPRFYDFVRDRVLVIQNAPFDLSFLDYFGKKIGIGELP 112

Query: 91  KRWICTSVLARTNGLP-SSLKNACLALNF 118
             ++ T  L+R+      +L      L  
Sbjct: 113 NPFVDTISLSRSLFRGRHNLDIILARLGI 141


>gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
 gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
 gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 25/157 (15%)

Query: 32  LCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           L   +   E   + D  +    +   L +  +D     V H +  + I  ++  GI +  
Sbjct: 155 LMQISTRTED-YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYV-- 211

Query: 91  KRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                T   +R   L   SL+                         C  + +        
Sbjct: 212 CNLFDTGQASRVLKLERNSLEFLLKHY-------------------CGVAANKEYQKADW 252

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                   +   Y + D      ++  +         
Sbjct: 253 RIRPLP-DVMKRYAREDTHYLLYIYDVMRMELHTMAK 288


>gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
 gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 33/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           M ++  D ET               E   + L     +           + +MP++    
Sbjct: 1   MREIVFDTETTG---FKFSEGDRLVEIGCVELVN-RVETGRTYHAYFNPERSMPAEAQAV 56

Query: 59  -----QYLRDE---------------TVMCVAHNSLFERILFKKTLG-----IDIPSKRW 93
                 +L+D+                   +AHN+ F+       LG           R 
Sbjct: 57  HGLSDAFLKDKPVFAEGVAEFLDFIGDAPLIAHNATFDFGFINGELGALGFPHVCEKTRM 116

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           + T  +AR    G   +L   C      
Sbjct: 117 VDTLAIARSKHPGAKHTLDALCSRYGID 144


>gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
 gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
          Length = 369

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 75/293 (25%), Gaps = 55/293 (18%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T                 A + L   A+D + + L D    S +     
Sbjct: 26  LVLDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPLAVSNL-ELFW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L  E+ + + H+   +  +F +             + + A   G+   L         
Sbjct: 69  QLLNKESSVKLLHSCSEDLEVFARYG--QCQPTNLFDSQIAAGLAGMGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +               T        +    Y   DV    +L+ +L+
Sbjct: 118 ---------GYAKLVEQTLEVSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLV 168

Query: 179 PLSDGERDL-WLLDQTINDRGYRIDL----------DLVLKLQELIAQERKKLDEDIVKL 227
                +  L W+ ++ +     R+D               +L        + L +  ++ 
Sbjct: 169 DKLKEQGRLDWVYEEGVRMTQGRLDTPDPDLAYLKVKNAFQLTSNQLAVLRDLAKWRMQR 228

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKDLI 278
                 +          + L   +         L  +         +    LI
Sbjct: 229 ALQKDLALGFVVKDHALIGLAKKLPKTSNDLYKLTELTEQEKRIHGKELIKLI 281


>gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------ 54
           + ++ +D ET       K G     E   + L                 +  +P      
Sbjct: 5   LREIVLDTETTGLD--TKSG-HRIIEIGCVELIN-RIPTGKTFHRYLNPERDIPYHSFKI 60

Query: 55  ----SDL---LQYLRD---------ETVMCVAHNSLFERILFKKTLG----IDIPSKRWI 94
                +         D            + V HN+ F+       LG      I S R +
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVL 120

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T  LAR    G P+SL   C   + S
Sbjct: 121 DTLPLARKKFVGSPASLNALCKRFDIS 147


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 24/118 (20%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVI-TLCA----YAWDDEPVKLW-------- 45
            +F+D ET    S    + ++G+           L +     +  ++P K          
Sbjct: 78  IVFLDTETTGLSSDMDVIIELGLVKALFSPTAHRLVSIERIVSAYEDPGKPITPFITELT 137

Query: 46  ----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSV 98
               D      +   ++    D+ V+ VAHN+ F+R  F K+  G +   K+W C+ V
Sbjct: 138 GITDDMVRGKRIDETMVAGFLDDAVLIVAHNAAFDRPFFEKRFRGFE--EKKWACSLV 193


>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
          Length = 642

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 25/157 (15%)

Query: 32  LCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           L   +   E   + D  +    +   L +  +D     V H +  + I  ++  GI +  
Sbjct: 155 LMQISTRTED-YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYV-- 211

Query: 91  KRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                T   +R   L   SL+                         C  + +        
Sbjct: 212 CNLFDTGQASRVLKLERNSLEFLLKHY-------------------CGVAANKEYQKADW 252

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186
                   +   Y + D      ++  +         
Sbjct: 253 RIRPLP-DVMKRYAREDTHYLLYIYDVMRMELHTMAK 288


>gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 42/155 (27%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLC------------------AYAWDDEP 41
            ++ +D ET     + + G   Y       I                       A D+E 
Sbjct: 9   RQVILDTETTG---MNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINPGQAIDEEA 65

Query: 42  VKLWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIP 89
           +++   T            +  D + ++    +  VAHN+ F+       F K   I   
Sbjct: 66  IQVHGITNDRVANEPRFHQIAKDFIDFIDGAEI--VAHNANFDVSFMDHEFSKLNPIGPK 123

Query: 90  SK---RWICTSVLARTNGLPS--SLKNACLALNFS 119
           +K     + +  +A+        +L   C      
Sbjct: 124 TKDICSILDSLAIAKRLHPGQKNNLDALCRRYGID 158


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 44/186 (23%), Gaps = 43/186 (23%)

Query: 8   IE-TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-------------------- 46
            E T     +   G+ A     +I L A    D  +   D                    
Sbjct: 422 TEDTYVVFDVETTGLSA-VYDTIIELAAVKIHDGEI--IDRFESFANPHHPLSATTINLT 478

Query: 47  ------RTEQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFK---KTLGIDIPSKRWICT 96
                       +   L ++       + VAHN+ F+        K +GI   S   I T
Sbjct: 479 GITDDLVENAPEVEEVLKKFHEWAGDAVLVAHNASFDMGFLNVGYKKMGIGKASNPVIDT 538

Query: 97  SVLARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
             LAR          L             +          G  L+            Y  
Sbjct: 539 LELARFLYPDMKNHRLNTLAKKFDVELTQHHRAIYDAEATGYLLLKMLKHADEKGIEYHD 598

Query: 148 TRANHV 153
              +++
Sbjct: 599 QFNDNM 604


>gi|262342265|gb|ACY54643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513
            +     ++    E      L G   +++  + R  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGR--KIIVDSPRKA 152


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 24/105 (22%)

Query: 4   LFIDIETR----SPQPLPKVGVWA--YAEQAVITLC--AYAWDDEPVKLWD--------- 46
           + +DIET     S   + ++G+    Y+ +  I      ++  +EP              
Sbjct: 23  IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAFNEPSVPIPREITAITGI 82

Query: 47  -----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
                      + +  +    D+ V+ +AHNS F+R   ++   +
Sbjct: 83  TDGMVAGHGFDVHA--VAAFVDDAVIVIAHNSGFDRKFAERYWPV 125


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL-- 105
             + SD  +++ D   + VAHN+ F+           G +      I T  ++R      
Sbjct: 489 KEVISDFREWVGDA--IFVAHNASFDMGFIDTAYNRHGFEKSHNAVIDTLEMSRFLHPNL 546

Query: 106 -PSSLKNACLALNF 118
               L       N 
Sbjct: 547 KSHRLNTLAKRYNV 560


>gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 195

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 36/134 (26%), Gaps = 49/134 (36%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPV-----KLWDRTE 49
           M K+FID ET   +P              I    Y         +E V       +D   
Sbjct: 1   MKKIFIDTETTGLEP------------GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDY 48

Query: 50  QSAMPSDL-------LQYLRDETVMC---------------VAHNSLFERIL----FKKT 83
                  +       L+ L                      +AHN  F+R      F + 
Sbjct: 49  IEESAEAIHGFSVEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRL 108

Query: 84  LGIDIPSKRWICTS 97
             ++   K + CT 
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
 gi|108873835|gb|EAT38060.1| conserved hypothetical protein [Aedes aegypti]
          Length = 949

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 15/123 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +L ID+E            +   +     L   +   +   + D          L +  
Sbjct: 291 KELAIDLE---------HHSYRTYQGFTC-LMQISTRSKD-YIIDTLALREELHILNEVF 339

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-NFS 119
            +  V+ V H ++ +    ++   + +       T   A+        L+       N  
Sbjct: 340 TNPKVVKVLHGAISDIEWLQR--DLSLYIVNMFDTGEAAKVLEFSRIGLQFLLKHYCNID 397

Query: 120 EHL 122
              
Sbjct: 398 TDK 400


>gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
 gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 33/150 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC---------AYAWDDE--------PVK 43
           + ++ +D ET         G     E   + +           +  + +         V 
Sbjct: 4   LRQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPDRHIDEEATEVH 63

Query: 44  LW------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI------DIPSK 91
                   D+   + + ++L+ ++R   ++   HN+ F+     K   +           
Sbjct: 64  GITDEMLADKPHFADVANELIDFIRGSELLI--HNAKFDSAFLDKEWDLLKLNEHTKDMC 121

Query: 92  RWICTSVLARTNGLP--SSLKNACLALNFS 119
           + + T  LAR       ++L N C   +  
Sbjct: 122 KIVDTVELARKINPNNQANLDNLCSIYDID 151


>gi|229472355|gb|ACQ72692.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R+   AS G  +V ADLAGIE R+LA          A  +G            +      
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R + K +  A  Y  G K            L +     K     + +  A      
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEK 122

Query: 485 ---MQDQYPEFAVKDKLIGTACE 504
                    E        G  C 
Sbjct: 123 LVTAVKSKAESGYIQLCDGRCCP 145


>gi|218887288|ref|YP_002436609.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758242|gb|ACL09141.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1198

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 45/186 (24%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQ--SAMPSDL 57
              + +D+ETR      +VG W  A++      + A   D          +     M   L
Sbjct: 1024 RYMVLDVETRRAA--AEVGGWHRADR---MGVSVAVLYDAADDSYTPYEQDAVPEMLDRL 1078

Query: 58   LQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSV------LARTNGLPSSLK 110
                     + V  N   F+  +       D+ +   +   +      L+       SL 
Sbjct: 1079 RAA-----DLVVGFNISRFDYAVLSPFAPYDLHTLPTLD-MLTKVKDRLSYRI----SLD 1128

Query: 111  NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            N                              +      +    +   L  EYC++DVE T
Sbjct: 1129 NLA-------------------QTTFGTPKSADGLQALQWWKEKRLDLITEYCRKDVEIT 1169

Query: 171  RELFKR 176
            R LF  
Sbjct: 1170 RALFLH 1175


>gi|242777655|ref|XP_002479078.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
 gi|218722697|gb|EED22115.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
          Length = 1129

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 8/222 (3%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ I A  G   V AD+   E  + + + G+        N         +KA  T 
Sbjct: 697 GSELKAMIKAPPGYVFVGADVDSQELWIAS-LVGDAQFQLHGGNAIGFMTLEGSKAAGTD 755

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       L +   +  ++  +++ +
Sbjct: 756 LHSRTASILGISRNDAKVFNYGRIYGAGLKFASTLLRQFNPTLTEKETSQIASKLYKETK 815

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
              +    + D        +  +    E   +  R        L   +TE         G
Sbjct: 816 GTRTTRKILNDGPFWRGGTESFVFNKLEEFAEQER---PRTPALGAGITEALMRRFINKG 872

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578
           S    R+    +     +   +   +    R    D +   +
Sbjct: 873 SFMTSRINWAIQSSGVDYLHLLITAMDFLIRRFNIDARLAIT 914


>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 244

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 41/154 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAY------------------AWDDEP 41
            ++ +D ET     +   G   Y       I                         D E 
Sbjct: 8   RQIILDTETTG---MNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPEA 64

Query: 42  VKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPS 90
           +++   T++        S +  + L+++R      +AHN+ F+           G++  +
Sbjct: 65  IQVHGITDEFLRDKPSFSQIADEFLEFIR--GAELIAHNAPFDVSFMDYEFSKLGLNFKT 122

Query: 91  KR---WICTSVLARTN--GLPSSLKNACLALNFS 119
                   T  +AR    G  ++L   C      
Sbjct: 123 ADICTITDTLAMARDLFPGKRNNLDVLCDRYGID 156


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNA 112
           +     +V+ VAHN+ F+    KK     GI I    +I T  L+R          L   
Sbjct: 463 EKFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRRLLTGLSSHKLNKV 520

Query: 113 CLALN----FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155
              LN             E  A I       +    Y   +  +   
Sbjct: 521 AEFLNVELRHHHRADSDAETTAGIFTSLMERLKVRGYKWLKELNSIE 567


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 39/149 (26%), Gaps = 38/149 (25%)

Query: 5   FIDI-E-TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-----LWDRTEQ------- 50
            ID+ E T     +   G+ A     +I L A   ++  V        D           
Sbjct: 446 SIDLKEATYVVFDVETTGLSA-VYDTIIELAAVKMENGQVVDTFESFIDPGRPLSATIIN 504

Query: 51  ---------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKR 92
                            +     ++  D   + VAHN+ F+           GID     
Sbjct: 505 LTGITDDMLKGSDDIETVLKRFKEWCGDA--VLVAHNASFDMGFLNTAYSKAGIDKAENA 562

Query: 93  WICTSVLARTNGLP---SSLKNACLALNF 118
            I T  LAR          L       N 
Sbjct: 563 VIDTLELARFLYPHFKNHRLNTLTKKFNI 591


>gi|207109869|ref|ZP_03244031.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 147

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 36/152 (23%), Gaps = 16/152 (10%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125
            + H+        K    + + + R   T +LA                 L         
Sbjct: 10  IIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP--- 66

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
                 I  F   +              +  + F +    +   +           + E 
Sbjct: 67  ---HEKIKDFKAKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLA--------REVET 115

Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
               +   +  +G++ID      L++    E 
Sbjct: 116 PFVKVLMGMEFQGFKIDAPYFKCLEQEFKNEL 147


>gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902]
 gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 23/113 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAW-------DDEPVKLWDRTEQSA 52
           L +D ET   +P     V   A    +     L   ++         EP+        + 
Sbjct: 79  LILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETNAAEPINRIP-AAVTR 137

Query: 53  MPSDLLQYLR------DETVMCVAHNSLFERILFKKTLGIDIPSK--RWICTS 97
           +P    Q L       D   + VAHN+ F+R  F +    ++P+    W+C+ 
Sbjct: 138 LPQPWKQALLWFQNLLDAADVLVAHNAAFDRQWFGR---GELPTVTQPWLCSM 187


>gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
 gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 33/118 (27%)

Query: 4   LFIDIETRSP--------------------QPLPKVGVWAYAEQAVITLCAYA-WDDEPV 42
           LFID ET                         L K  +   A    I     A     P 
Sbjct: 130 LFIDTETTGLDHQAAIVEIAILDRAGAVLIDTLVKPAMPIPAAATEIHGITDADVAGAPA 189

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS 97
                   + +   + + L     + +AHN  F+  L     ++ G+ +P+ R  CT 
Sbjct: 190 W-------NTIGPQVAELLA--GRLLIAHNGAFDERLLYQTSRSHGVTLPALRVECTM 238


>gi|212533271|ref|XP_002146792.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
 gi|210072156|gb|EEA26245.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
          Length = 1122

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 70/257 (27%), Gaps = 8/257 (3%)

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385
           Q   +  Q      +T+                     +++ I A  G   V AD+   E
Sbjct: 657 QLGFILPQIIPMGTITRRAVENTWLTASNAKGNRVGSELKAMIKAPPGYVFVGADVDSQE 716

Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGY 441
             + + + G+        N         +KA  T +   +       R   KV      Y
Sbjct: 717 LWIAS-LVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTASILGISRNDAKVFNYGRIY 775

Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501
             G K   T+       L +   +  ++  +++ +   +    + D        +  +  
Sbjct: 776 GAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFWRGGTESFVFN 835

Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
             E   +  R        L   +TE         GS    R+    +     +   +   
Sbjct: 836 KLEEFAEQER---PRTPALGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLITA 892

Query: 562 LPSSRRLVYSDVKGDCS 578
           +    R    D +   +
Sbjct: 893 MDFLIRRFNIDARLAIT 909


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 28/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT---------LCAYAWDDEPVKLWDRTEQ 50
            +  DIET          +   A   +   I            +  +    +      + 
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQLINPGISIPYHITEITSITNEQV 481

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLA 100
                   +    ++++ D   + VAHN+ F+    K+     L ID+     I T  +A
Sbjct: 482 ANQPKIDEVIGKFVEFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLE-SSVIDTLQMA 538

Query: 101 RTNGL---PSSLKNACLALNF 118
           R          L +   +L  
Sbjct: 539 RDLFPDFKKYGLGDLNKSLGL 559


>gi|189501595|ref|YP_001957312.1| hypothetical protein Aasi_0137 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497036|gb|ACE05583.1| conserved hypothetical protein [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 45/195 (23%)

Query: 15  PLPKVGVWAYAEQAVITLCA-----YAWDDEP---VKLWDRTEQSAMPSDLLQYLR---- 62
            L       YAE   + +       +    +P   V+      +  +   L   L     
Sbjct: 52  NLFSERAGVYAEFGKVIVIGLGHITFDICGDPSLQVQALSSHNEKELLGQLRNILEEKYQ 111

Query: 63  DETVMCVAHNSL-FERILFKKTL---GIDIPS-------KRWI----CTSVLARTNGLPS 107
            E +   AHN   F+     + +   GI +P+       K W      T  + R     S
Sbjct: 112 QENIRLCAHNGKEFDFPYLCRRMLVNGISLPTVLDCAGKKPWEVTHLDTMEMWRFGDRKS 171

Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             SL         +   +K     + ++ F                         +YC +
Sbjct: 172 FTSLDLLANLFGVN--SSKTLMDGSEVSYF--------------YYVENDLTRIAKYCMQ 215

Query: 166 DVEATRELFKRLIPL 180
           DV  T ++F +L   
Sbjct: 216 DVIVTSQIFLKLNNW 230


>gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
 gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAY--------AEQAVITLCA 34
           M ++ +D ET   +                   L       Y        AE   +   +
Sbjct: 1   MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPERDMPAEAFAVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS 90
                    L D+ + + +    L+++       V HN+ F+         +     I  
Sbjct: 61  ------SEFLSDKPKFAEVADAFLEFIA--GDTLVIHNAAFDIGFLNAELARLSREPIAR 112

Query: 91  KRWICTSVLARTNGLPSS--LKNACLALNFS 119
            R + T  LAR     +S  L +        
Sbjct: 113 DRVVDTVALARRKHPGASAKLDDLMKRYGID 143


>gi|290996841|ref|XP_002680990.1| predicted protein [Naegleria gruberi]
 gi|284094613|gb|EFC48246.1| predicted protein [Naegleria gruberi]
          Length = 175

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNG 104
           D  E +     + +++ ++ V+ +AHN   F+  + K     ++      CT V +    
Sbjct: 36  DCLEFNQHIQRIKEFIGNDDVLLIAHNGKKFDERVLKYHFTDNLSQFE-NCTLVDSLQMI 94

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALI 132
              +  +      FS+   K+ E K   
Sbjct: 95  TKFN-DDLPTVTRFSKKQQKLVEKKDKK 121


>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
 gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
          Length = 433

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 57/208 (27%), Gaps = 37/208 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E        +   + Y ++A +    +        L D  +     +     + +
Sbjct: 45  LAVDTE--------RASAYRYDDRAFLL--QFRRRGAGTFLIDPEDGRKAMAVFGSSVNN 94

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
             +  + H +  +         + +   + I T +  R  GL   +L      L      
Sbjct: 95  --LTWIIHAAHSDLPCLAA---LGLYPTKVIDTELAGRLLGLERVNLAALTERL------ 143

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                G  L     +    + P      +          Y   DVE   EL + L     
Sbjct: 144 ----LGVGLAKGHGREDWSTRPLPADWLD----------YAALDVELLIELAEVLCQALT 189

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQ 210
               L  L+Q        I+   +  L 
Sbjct: 190 ELDRLEWLEQECERE-LAINRKYLDGLH 216


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 28/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT---------LCAYAWDDEPVKLWDRTEQ 50
            +  DIET          +   A   +   I            +  +    +      + 
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQLINPGISIPYHITEITSITNEQV 481

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLA 100
                   +    + ++ D   + VAHN+ F+    K+     L ID+     I T  +A
Sbjct: 482 ANQPKIDEVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLE-NSVIDTLQMA 538

Query: 101 RTNGL---PSSLKNACLALNF 118
           R          L +   +L  
Sbjct: 539 RDLFPDFKKYGLGDLNKSLGL 559


>gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 40/152 (26%)

Query: 1   MSKLFIDIETR--SPQP----------------LPKVGVWAYAEQAVITLCAYAWDDEPV 42
           M ++F+D ET   S                   L    +  Y           + + E V
Sbjct: 1   MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPER------SSNPEAV 54

Query: 43  KLWDRTEQSAMPSDLLQYLRDETV------MCVAHNSLFERILFKKTLG-------IDIP 89
           K+   T++      L   + DE +        + HN+ F+       L        +++ 
Sbjct: 55  KVHGLTDEFLADKPLFAAVADEFIEFVRDAELIIHNAAFDVGFLDAELTRLGKPRLVEL- 113

Query: 90  SKRWICTSVLARTNGLPS--SLKNACLALNFS 119
                 + V+AR        SL   C  L   
Sbjct: 114 GCTITDSLVMARQLFPGKANSLDALCKRLEVD 145


>gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
 gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
          Length = 385

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 46/196 (23%), Gaps = 43/196 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQSAM-P 54
            + ID E     T                   + L   A         L D  E   M  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPIEGPDMSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    R E  + V H +  +  +F   +           T V A   G          
Sbjct: 67  EPLYDLFRHEATVKVFHAARQDLEIF--FVEGRAFPVPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K    +  K S  +       ++          Y   DV   R ++
Sbjct: 117 ----EQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQ------KTYAIADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLL 190
           + L    +       +
Sbjct: 167 EWLSAQIEKNGRQKWV 182


>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
 gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
          Length = 179

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 29/146 (19%)

Query: 3   KLFIDIETRSPQPLP----KVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---------- 48
            + +D+ET    P                  I   +Y+   +P +               
Sbjct: 13  FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIVR-SYSRFVKPEQEIPPFITELTGISNE 71

Query: 49  ------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDI-PSKRWICTSVL- 99
                     +     +++   T+  +AHN+ F+       L  + +   K +ICT  L 
Sbjct: 72  MVANEDTIEQVLPRFRKFIGSNTI--IAHNAKFDIKFLNYYLNKLGLEEIKDYICTLELL 129

Query: 100 ---ARTNGLPSSLKNACLALNFSEHL 122
              +   G    L  AC         
Sbjct: 130 KKVSSYGGKNKKLATACEYYGIENKN 155


>gi|302410881|ref|XP_003003274.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
 gi|261358298|gb|EEY20726.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
          Length = 963

 Score = 43.9 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 76/278 (27%), Gaps = 12/278 (4%)

Query: 299 VSSDGRLRGTLQFY---GASRTGRWSGCVFQPQNLPRQER-SEEILTQTIQALNRGETIA 354
           +S+  R++  +  Y    A+            Q     +      +T+            
Sbjct: 548 ISARDRIKSQMVVYEEDVATEKLEGGMENKNTQGFILPQIIPMGTITRRAVENTWLTASN 607

Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414
                    +++ + A  G   V AD+   E  + + + G+        N          
Sbjct: 608 AKRNRVGSELKAMVKAPPGYSFVGADVDSQELWIAS-LVGDATFKLHGGNAIGFMTLEGT 666

Query: 415 KAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470
           KA  T +   +       R   KV      Y  G K    +      +L +      ++ 
Sbjct: 667 KAAGTDLHSRTAGILGITRNDAKVFNYGRIYGAGLKFAAQLLRQFDPNLSEKETLETASK 726

Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530
            + + +  +++   +  +       +  +    E   +  R        L   +TE    
Sbjct: 727 LYVNTKGTKTNRKVLYKRPFWRGGTESFVFNKLEEFAEQER---PRTPVLGAGITEALMG 783

Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568
                G     R+    +     +   + + +P    L
Sbjct: 784 RFINKGGYLTSRINWAIQSSGVDYLHLLIVTIPHGESL 821


>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 45/192 (23%), Gaps = 42/192 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T                   + L   A  D    +         P  L 
Sbjct: 36  IALDTEFVREKTYY---------------PRLCLVQVATPDALACIDPIALPDLGP--LA 78

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L D  V  V H +  +  +  ++ G          T V     G              
Sbjct: 79  ALLHDPAVTKVVHAAHQDMEILLQSTGRV--PTPVFDTQVAVSLLGHG------------ 124

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  + G A + +          +  T  +          Y   DV     ++  ++
Sbjct: 125 ------DQIGYARMVQIYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMIL 178

Query: 179 PLSDGERDLWLL 190
              + +  L  L
Sbjct: 179 KDLEEKGRLDWL 190


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score = 43.9 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 22/140 (15%)

Query: 3   KLFIDIETRS---------PQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTE 49
            +F+D+ET              + +VG     E   +     +             D   
Sbjct: 33  IVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETLLDPGMSIPPFIQRMTGISDDMVR 92

Query: 50  QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG 104
                  L + L +  +  + VAHN+ F+    K      G+       +CT  L+R+  
Sbjct: 93  GQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFR-ADVLCTVRLSRSLF 151

Query: 105 LP---SSLKNACLALNFSEH 121
                  L         +  
Sbjct: 152 PSVERHGLDALIARFGLTPK 171


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 43.9 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 18/111 (16%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLC-----AYAWDDEPVKLWDRTEQS-- 51
            +  DIET         + ++    Y +   +        +    DE  KL   T     
Sbjct: 8   FIAFDIETTGLDFHQDAVIQISAARYVDGIEVDYFDTLVNSDYIPDEITKLTGITNDQVL 67

Query: 52  --AMPSDLLQYLRD--ETVMCVAHNSL-FERILFKKTLGIDI-PSKRWICT 96
                 +++ YL D     + V HN   F+    K   G +I        T
Sbjct: 68  NAPTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLK-AKGYNIAEGHEIYDT 117


>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score = 43.9 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 58/222 (26%), Gaps = 36/222 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + +  ++     +       T   +R   +   SL++    
Sbjct: 30  LKEIFKDPTKRKVMHGADRDIMWLQR--DFRVYVCNLFDTGQASRVLQMERNSLEHL--- 84

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+                 FC  + +    +    +   + ++   Y + D      ++ 
Sbjct: 85  LHH----------------FCGVTANKIYQNADWRSRPLSDEMIK-YAREDTHYLLYIYD 127

Query: 176 RLIPLSDGE------------RDLWLLDQTINDRGYRIDLDLVLKL-QELIAQERKKLDE 222
            +      E            +    +   + ++    D   +     +       +L  
Sbjct: 128 LMRLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQLAV 187

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
                      +  Q  +    L     I++      T   +
Sbjct: 188 VSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADL 229


>gi|262212333|gb|ACY35783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFILTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score = 43.9 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 34/150 (22%), Gaps = 43/150 (28%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
            +  D ET              ++   +    A       V+  D       P   +   
Sbjct: 641 YVVFDTETTGL---------QISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAE 691

Query: 61  ------LRD--------------------ETVMCVAHNSLFERILF---KKTLGIDIPSK 91
                 + D                       + VAHN+ F++          G+ +   
Sbjct: 692 STAFHRIEDHMVADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVEN 751

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNF 118
             + T  L+          SL      +  
Sbjct: 752 PILDTLFLSVGLHSGTEGHSLDAMAQRMGI 781


>gi|229472507|gb|ACQ72768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 43.9 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+          A  +             +
Sbjct: 6   PSDPRFRALFLPSPGQVMVAADLSGIELRMLSHF-------LAKYDDGRYADILLNGDTH 58

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                     R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 59  QVNADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 118

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 119 -LDKLLAAIKTASERGFIKAIDGRK 142


>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
 gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 34/149 (22%)

Query: 1   MSKLFIDIETRSPQ------------------PLPKVGVWAYAEQAVITLC---AYAWDD 39
           M ++ +D ET                       L       Y            A A   
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYI-NPE-RGIDAEAIAVHG 58

Query: 40  -EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPS--KR 92
                L D+   SA+ ++   ++RD     + HN+ F+         +     + S    
Sbjct: 59  ITEDFLADKPTFSAIAAEFEDFIRDAE--LIIHNASFDVGFLNHELSRLGRGKLDSLCAG 116

Query: 93  WICTSVLARTNGLP--SSLKNACLALNFS 119
            I T  +A+       +SL   C      
Sbjct: 117 VIDTLKMAKEQNPGKKASLDALCDRHQID 145


>gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17]
 gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17]
          Length = 392

 Score = 43.9 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 51/195 (26%), Gaps = 32/195 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL- 61
            + +D E        +   +       + L   A D +     D        + LL  L 
Sbjct: 25  FITVDTE------FMRESTYW----PELCLIQIA-DTQEAAAIDPKAPGLDMTPLLDLLV 73

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            ++ V+ V H    +  +     G          T + A   G               + 
Sbjct: 74  NNDEVLKVFHAGGQDIEIIYNLTGKT--PHPLFDTQIAAMALGQG------------EQI 119

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L  +  KG+  +              Q   +Y   DV    ++F R++   
Sbjct: 120 GYSNLVDSWLGIQVDKGARFTDWSRRPLD------QRQVDYAIGDVTHLSDIFPRMLERL 173

Query: 182 DGERDLWLLDQTIND 196
                   LDQ +  
Sbjct: 174 RKTGRGAWLDQEMER 188


>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 43.9 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 58/222 (26%), Gaps = 36/222 (16%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + +  ++     +       T   +R   +   SL++    
Sbjct: 98  LKEIFKDPTKRKVMHGADRDIMWLQR--DFRVYVCNLFDTGQASRVLQMERNSLEHL--- 152

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L+                 FC  + +    +    +   + ++   Y + D      ++ 
Sbjct: 153 LHH----------------FCGVTANKIYQNADWRSRPLSDEMIK-YAREDTHYLLYIYD 195

Query: 176 RLIPLSDGE------------RDLWLLDQTINDRGYRIDLDLVLKL-QELIAQERKKLDE 222
            +      E            +    +   + ++    D   +     +       +L  
Sbjct: 196 LMRLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQLAV 255

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
                      +  Q  +    L     I++      T   +
Sbjct: 256 VSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADL 297


>gi|311070090|ref|YP_003975013.1| putative hydrolase [Bacillus atrophaeus 1942]
 gi|310870607|gb|ADP34082.1| putative hydrolase [Bacillus atrophaeus 1942]
          Length = 285

 Score = 43.9 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 67/260 (25%), Gaps = 44/260 (16%)

Query: 1   MSKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M  + ID++     T S            A  A I                         
Sbjct: 1   MKLIAIDLDGTLLTTESKISAENRAAIKRAVDAGIL---VTICTGRATF----------- 46

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNAC 113
           D+   L D  +  +A N                       T   ++++T     + K+  
Sbjct: 47  DVKALLEDLDIPIIAAN-----------------GGTVHDTGYRLISKTLMDQQAGKDIA 89

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       ++     L++ F   S      D  ++ +                 T+  
Sbjct: 90  DYLLSQNIYFEVYTDHHLLSPFDGQSKLQAELDILKSANPDEDIHTLWQGAM----TQFK 145

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              + P+ D +      +       +  D++ + K +E +    +KL +         I 
Sbjct: 146 QFGIKPVHDIQTVFDGNENVYKLLCFSFDMEKLKKAKEELT-HHQKLSQTSSGKHIIEIL 204

Query: 234 SSRQTY-ALRMYLFLITGID 252
            +          L    GI+
Sbjct: 205 PASSGKGRALTELADRYGIE 224


>gi|171686350|ref|XP_001908116.1| hypothetical protein [Podospora anserina S mat+]
 gi|161087386|gb|ABX56854.1| mitochondrial DNA polymerase gamma catalytic subunit [Podospora
           anserina]
 gi|170943136|emb|CAP68789.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1155

 Score = 43.9 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 5/195 (2%)

Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384
             P  +  Q      +T+                     +++ + A  G   V AD+   
Sbjct: 660 PTPGFILPQVIPMGTVTRRAVENTWLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSE 719

Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALG 440
           E  + + + G+        N          KA  T +   +       R   KV      
Sbjct: 720 ELWIAS-VVGDATFKLHGGNAIGFMTLEGTKAQGTDLHSRTAAILGITRNDAKVFNYGRI 778

Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500
           Y  G K    +       L +      +   +   +  +++   +  +       +  + 
Sbjct: 779 YGAGLKFAGQLLRQFNPSLSEQETLDIAGKLYATTKGTKTNRKSLYKRPFWRGGTESFVF 838

Query: 501 TACELVKKAWRAKHQ 515
              E   +    +  
Sbjct: 839 NKLEEFAEQSHPRTP 853


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 43.9 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 40/154 (25%), Gaps = 43/154 (27%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---YAWDDEPVKLWD-RTEQSAMPSDL 57
             +F D+ET    P          E   I       Y +     K  D   +  +   D 
Sbjct: 431 KMVFFDLETTGLSP----------ELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDF 480

Query: 58  LQYLRD-----------------------ETVMCVAHNSLFERILFKKT---LGIDIPSK 91
            + L +                       +  + VAHN+ F+          LG      
Sbjct: 481 TKKLTNINEEMLENKPGIEVAFKEINQVIKDAILVAHNANFDYTFLSHWSEKLGYGKLEN 540

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFSEHL 122
             I T  ++R          L +    +N S   
Sbjct: 541 TIIDTLTISRIIYPELKSHRLGSLAKRVNISYDP 574


>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
 gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
          Length = 512

 Score = 43.9 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 33/183 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S++ +D+E              Y   Q  + L   +   +   +     +S +   L   
Sbjct: 244 SEIAVDLE-----------NHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSV 292

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             + ++  V H S  + +  ++  GI +       T   AR   +             + 
Sbjct: 293 FANPSIRKVIHGSDRDILWLQRDFGIYV--CNLFDTGQAARVLRM--------ERFGLAF 342

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                     L+  FC+ + D             + ++   Y + D      ++ ++  L
Sbjct: 343 ----------LLQTFCEVTPDKRYQLADWRLRPLSAEMLK-YAREDTHYLLYVYDKMKGL 391

Query: 181 SDG 183
              
Sbjct: 392 LRD 394


>gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
 gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 35/148 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------AY-----AWDDEPVKLW 45
           M ++ +D ET   +P          E   + L            Y       D+  +++ 
Sbjct: 1   MRQIVLDTETTGLEPSQG---HRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVH 57

Query: 46  DRTE----QSAMPSDLLQ---YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---- 94
             T        +  D+        D   + + HN+ F+         +       I    
Sbjct: 58  GITNEFLADKPVFKDIADEFMAFVDGAELVI-HNAPFDVGFLNHEFNLLGRGSTVINDRC 116

Query: 95  ---CTSVLAR--TNGLPSSLKNACLALN 117
               T  LAR    G  ++L   C    
Sbjct: 117 SILDTLALARNKHPGQKNNLDALCKRYG 144


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 28/144 (19%)

Query: 1   MSKLFI-DIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDE--------------P 41
           M  L   D+ET         + ++G+        +       +                 
Sbjct: 1   MRPLAFVDLETTGATATHDRITEIGIVEVDADGSVREWQQLVNPGMRIPPFIEQLTGISD 60

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
             + D     A+  ++++ L     + +AHN+ F+    K      G+       +CT  
Sbjct: 61  EMVADAPPFEAIAGEVMKRLE--GRLFIAHNARFDYGFLKNEFKRLGVTFR-AAVLCTVK 117

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+RT        +L +        
Sbjct: 118 LSRTLFPEHKRHNLDSLIERHELR 141


>gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 196

 Score = 43.9 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 29/124 (23%)

Query: 1   MSKLFIDIETRSPQP-----LPKVGVWAYAEQAVITLCA--YAWD----DEPVKLWDRTE 49
           M K+F+D ET   +P     L        +        A  + +D    +   +      
Sbjct: 1   MKKIFLDTETTGLEPGQIIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEAVHGFS 60

Query: 50  QSAMP-----SDLLQY-------LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW 93
              +       +           L     + +AHN  F++      F +   I     ++
Sbjct: 61  VERLKTLSMGQEFKDAASEVAADLE--GGIFIAHNVRFDQKFVTAEFDRLNSIHWNPAKF 118

Query: 94  ICTS 97
            CT 
Sbjct: 119 FCTM 122


>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 247

 Score = 43.9 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 41/158 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------AY-----AWDDEPVKLW 45
           M ++ +D ET     L         E   + L            Y       D   +++ 
Sbjct: 1   MRQIVLDTETTG---LETSDGHRVIEIGCVELINRRLSGRHFHQYINPQREVDPGAMEVH 57

Query: 46  DRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-------IPS 90
             + +        SA+  + L+++  +    + HN+ F+       L ++       +P+
Sbjct: 58  GISNEFLQDKPLFSAIADEFLEFI--KGAELIIHNAPFDIGFLDYELSLESERRAAPMPT 115

Query: 91  K----RWICTSVLARTNGLPS--SLKNACLALNFSEHL 122
                  I T V+AR        +L   C   +     
Sbjct: 116 VESLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSS 153


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score = 43.9 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 38/144 (26%), Gaps = 36/144 (25%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------------LWDRT---- 48
           ET     +   G+ A     +I L A    +  +                 + D T    
Sbjct: 418 ETYIVFDVETTGLSA-VYNTIIELAAVKVKNGEIVDRFESFANPHEKLTPLIIDLTGITD 476

Query: 49  -------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV 98
                  E   +  D  +++ D     VAHN+ F+           G    +   I T  
Sbjct: 477 DMVENAPEVDDVLKDFHEWIGDA--TLVAHNASFDMGFINAGFQKIGYGHATNPVIDTLE 534

Query: 99  LARTNGLP---SSLKNACLALNFS 119
           L R          L   C   N  
Sbjct: 535 LGRLLYPTFKNYRLNTLCKKFNIE 558


>gi|73662206|ref|YP_300987.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 184

 Score = 43.9 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 27/140 (19%)

Query: 3   KLFIDIETR-------SPQPLPKVGVWAYAEQAVITL----------CAY-AWDDEPVKL 44
            + +D ET            + KV      E     +           A  +   E V+ 
Sbjct: 6   FIALDFETANGKRTSICAVGMVKVVNHQITESFYTLVNPNDYFSQQNIAVHSIHPEQVE- 64

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR 101
            D      +   +LQ++ D  +  VAHN+ F+  +  +     G D P+  + C+  L+R
Sbjct: 65  -DAPTFQTVYPYMLQFIGD--LPVVAHNAAFDMNVLHESISAFGFDTPNMTYFCSLQLSR 121

Query: 102 --TNGLPSSLKNACLALNFS 119
                    L       N  
Sbjct: 122 RTVENHRYGLNYMMQYYNLD 141


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 43.9 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  E   + ++  +++ D   + VAHN+ F+        + +G    +   I T  L+RT
Sbjct: 483 DAPEIDEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERIGFGPSTNGVIDTLELSRT 540

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1]
          Length = 179

 Score = 43.9 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 24/143 (16%)

Query: 2   SKLFIDIET--RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL---------WDRTEQ 50
             +  D+ET   +   +  +G+    E   I    ++  D               D  + 
Sbjct: 3   RYIVFDVETPNFANNHMSAIGI-TVVEDGRIADSFFSLVDPETHFDHFNIRLTGIDPKKV 61

Query: 51  SAMP--SDLLQYLR---DETVMCVAHNSLFERILFKK---TLGIDIP-SKRWICTSVLAR 101
              P  + L Q +    +  ++ VAHN++F+  + KK     GI+   + +++CT    R
Sbjct: 62  QGAPNFAQLWQKIEPIMNSGIL-VAHNAVFDMSVLKKCLSAYGIEWKSTAKYLCTVQAGR 120

Query: 102 TN--GLPSSLKNACLALNFSEHL 122
               G    L   C     S   
Sbjct: 121 KLLPGRGHKLNEMCDYYGISLDH 143


>gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
 gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
          Length = 385

 Score = 43.9 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 64/282 (22%), Gaps = 63/282 (22%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQSAM-P 54
            + ID E     T                   + L   A         L D  E   M  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPIEGPDMSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    R E  + V H +  +  +F   +           T V A   G          
Sbjct: 67  EPLYDLFRHEATVKVFHAARQDLEIF--FVEGRAFPVPLFDTQVAAMVCGFG-------- 116

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                +   +    K    +  K S  +       ++          Y   DV   R ++
Sbjct: 117 ----EQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQ------KTYAIADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLD---------LVLKLQELIAQERKKLDEDIV 225
           + L    +       ++    +     D +          +       +     + +++ 
Sbjct: 167 EWLSAQIEKNGRQKWVE---EELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKELA 223

Query: 226 ---KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
              +         R        L     +++        + +
Sbjct: 224 RFREDYAQKNNVPRSRVMKDDAL-----LEIASTRPTNAEEL 260


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score = 43.9 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 494 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARH-GIPEAANPVIDTLELARYLYPQFKR 552

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 553 FGLGVLSKKFGVS 565


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 43.9 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 64  ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           E  + VAHN+ F+    ++    +G +      + T +L+          SL      L 
Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFD-NPVLDTVLLSAVVFGAAEGHSLDALTHRLG 648

Query: 118 FS 119
            +
Sbjct: 649 IT 650


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 43.9 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 64  ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           E  + VAHN+ F+    ++    +G +      + T +L+          SL      L 
Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFD-NPVLDTVLLSAVVFGAAEGHSLDALTHRLG 648

Query: 118 FS 119
            +
Sbjct: 649 IT 650


>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
          Length = 371

 Score = 43.9 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 82/278 (29%), Gaps = 21/278 (7%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D T    M + +   L+D +V+ V H    +  +F  + G  
Sbjct: 39  PQLGLIQL-FDGETLSLIDPTVIDDMTAFVH-LLKDTSVLKVLHACGEDLEVFNNSFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++            +   D   
Sbjct: 95  CLPYPMVDTQLMAAFLGHGLSTGFASLVESYLGVELDKSESRT-----DWLARPLTD--- 146

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                        L   Y K   E T+  +       + +       ++++     +D+ 
Sbjct: 147 -KQLDYAAADVHYLLPLYEKLLEEITQAGWWE-AAQQESDLLATKRIKSLDPEKAYLDVK 204

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEGTLKS 263
              +L+       K L     K       +    +     L +   G+      E   + 
Sbjct: 205 GAWQLKPSELALLKPLATWRFKEAIRRDLALNFVFKEHDLLTIARLGLQNKQRME---QE 261

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301
            L   ++ + +  +I    ++  + + +     E +  
Sbjct: 262 GLDIRSVQRHSARIISIVKSAKMTPVDEYPAKIERLMD 299


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score = 43.9 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
           D  +  A+  + L+++ D     +AHN+ F+    KK    LGI+ P + +I T   AR 
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGIN-PVRTYIDTLAFARA 519

Query: 103 NGLP---SSLKNACLALNFS 119
                    L       N +
Sbjct: 520 LESHLKNHKLDTLTKKYNVN 539


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 43.9 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 67  MCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSE 120
             VAHN+ F+    +   + +G DIP+  + CT   +R   L      L           
Sbjct: 203 PVVAHNAQFDATALREACRAVGRDIPNIMFACTLAQSRAAKLKVQNHRLPTLAEHFGVQL 262

Query: 121 HLTKM 125
                
Sbjct: 263 EKHHD 267


>gi|259907392|ref|YP_002647748.1| DNA polymerase II [Erwinia pyrifoliae Ep1/96]
 gi|224963014|emb|CAX54497.1| DNA polymerase II [Erwinia pyrifoliae Ep1/96]
 gi|283477225|emb|CAY73132.1| DNA polymerase II [Erwinia pyrifoliae DSM 12163]
          Length = 787

 Score = 43.9 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPV-------KLWDRTEQSA 52
           +  + +DIET     L  +G+   A+    +       ++          +  D   +  
Sbjct: 152 LKWVSLDIETTRHGELYCIGLEGCAQRDVYMLG----PENGDASQINFHLEYVD--SRPQ 205

Query: 53  MPSDLLQYLR--DETVMCVAHNS-LFERILFKKT---LGIDIPSKR 92
           +   L  +    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 206 LLEKLNAWFARHDPDVL-IGWNLVQFDLRVLQKHADRYGIPLRLGR 250


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score = 43.9 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 62/245 (25%), Gaps = 73/245 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPS----- 55
            +  D ET               E  +I + A       +        +           
Sbjct: 427 YVVFDTETTGLN---------AREDTLIEIAAVKVKAGQIVDTYATLIDPERALDPKIVE 477

Query: 56  -------------DLLQYLR-----DETVMCVAHNSLFERILFKKT---LGIDIPSKRWI 94
                         L + L          + VAHN+ F+     +    LG+D   +  I
Sbjct: 478 LTGITNEMVAGQPKLKEALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVI 537

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T  LAR                      K  + K L  +F    ++             
Sbjct: 538 DTLALARVLYPG----------------EKNYKLKTLTQKFSVDLVNH------------ 569

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                      D EAT ++F  ++   D +         +N    +ID+  V      + 
Sbjct: 570 ------HRALADSEATAKVFVHMLK--DAKARGIHNLLDMNHLRGQIDISRVRPFHATVL 621

Query: 215 QERKK 219
              ++
Sbjct: 622 VRNRE 626


>gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153]
 gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153]
 gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
          Length = 177

 Score = 43.9 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLC--AYAWDDEPVKLWDRTEQS 51
           M+ + +D ET      S   L  V V     A++           +D   + +   T   
Sbjct: 1   MNFIAMDFETANRHPESACSLALVMVRNNKIADRFYTV-INPQMPFDGRNISVHQITPSD 59

Query: 52  ----AMPSDLLQYLRD---ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                  +++   ++D     ++  AHN+ F+  + K +     I  P    I T   +R
Sbjct: 60  VKDAPTMAEVWPKIKDLYQPGMLVAAHNAKFDANVLKMSLARYDIAEPHYLVIDTLKTSR 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     AL+  
Sbjct: 120 LFEPDLPNHKLNTVSEALDVE 140


>gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973]
 gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973]
          Length = 163

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 28/144 (19%)

Query: 1   MSKLF-IDIET-------RSPQPLPKVGVWAYAEQAVITLCA-----YAWDDEPVKLWDR 47
           M     ID ET            L  V   A A+    +L       Y++    V     
Sbjct: 1   MKDFAAIDFETANNERSSVCSVGLVIVRNGAVADTFY-SLIQPEPNYYSYWCVRVHGLTH 59

Query: 48  TEQSAMP------SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
            +  A P        +   +    +  VAHNS F+    +   +   +D P   +  T  
Sbjct: 60  ADTDAAPVFSEVWKQIEPLIE--GLPLVAHNSRFDESCLRAVFRVYQMDYPDYSFFDTLT 117

Query: 99  LART---NGLPSSLKNACLALNFS 119
            AR    +     L        + 
Sbjct: 118 AARRTFPHLSNHQLHTVATECGYD 141


>gi|221068113|ref|ZP_03544218.1| DNA polymerase B region [Comamonas testosteroni KF-1]
 gi|220713136|gb|EED68504.1| DNA polymerase B region [Comamonas testosteroni KF-1]
          Length = 673

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDL 57
           +  + +DIET   Q L  + +   AE+ V  L   + + EP     L   + +  M   L
Sbjct: 36  LKVVSLDIETSQHQDLYSIALDGMAERMVFMLGQPSSEPEPTTGFALVYCSSRQEMIKQL 95

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKTL---GIDIPSKR 92
             +    D  V+ V  N   F+  + +KT    GI +   R
Sbjct: 96  NDWFARNDPDVI-VGWNVIQFDLRVLQKTADDCGIPLLPGR 135


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 35/143 (24%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCA------------YA--WDDEP----------VKL 44
           ET     L  +G+   + +  I                Y+   +                
Sbjct: 413 ETYVVYDLETMGLN--SHENEIIEIGAIKLKGTRIVDKYSQLINPGKSIPSKIQELTGIT 470

Query: 45  WDRTEQSAMPSDLLQ-YLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSV 98
            D  +      ++L  +L        VAHN+ F+        KK   I       I T  
Sbjct: 471 DDMVKDEPSIEEVLPGFLEFAGDATLVAHNARFDIGFLTRDVKKYTNIKDYKPSVIDTLQ 530

Query: 99  LARTNGL---PSSLKNACLALNF 118
            AR          LK+    L  
Sbjct: 531 WARDLLPDLRGYGLKSVTKKLGV 553


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille]
 gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 2   SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ----- 50
             +F+D+ET         + ++G+ A      I   +   +      +            
Sbjct: 6   KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDRWSTFVNPGRPIPEFIQGLTGISDEM 65

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
                    +   + + L+D   + +AHN+ F+           G  +     +CT  L+
Sbjct: 66  VESAPMFETLADTVRERLQDG--LFIAHNARFDYGFLHHAFVRSGHVLN-AEMLCTVKLS 122

Query: 101 RTNGL---PSSLKNACLALNF 118
           R         +L +     + 
Sbjct: 123 RALFPAEKKHNLDSLIARHDL 143


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 23/140 (16%)

Query: 6   IDIETRSPQP---------LPKVGVWAYAEQA--VITLCAYAWDDEPVKLW-----DRTE 49
           +D+ET    P         + ++     AE     +       D  PV++      D   
Sbjct: 32  LDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNPGAGVDPGPVEVHGLTTADLAG 91

Query: 50  QSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS--VLARTN 103
                             + VAHN+ F+           G+ +    W+CT     A   
Sbjct: 92  APPFRDVAATIAERLAGRVFVAHNAAFDWAFVAVESDRAGVRLEVLDWLCTMRFAKALAL 151

Query: 104 GLP-SSLKNACLALNFSEHL 122
            +P  SL          +  
Sbjct: 152 DVPDKSLATIAAYYAVEQLK 171


>gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
 gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
          Length = 178

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LG 85
              +T  +         + D      +   +     D   M VAHN+ F+  + K   L 
Sbjct: 50  NVKLTGIS------KASVKDAPTFPELWQQIEPLFSDG--MLVAHNASFDMNVLKNCLLD 101

Query: 86  IDI---PSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
            +I   P  R++CT  + R+        L   C     S   
Sbjct: 102 YEIDWKPYARYLCTVKMGRSLFPDRSHKLNMVCEDFGISLQH 143


>gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 212

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 43/154 (27%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP 54
           M  +  +D ET    P          E AVI L          ++ DR +        +P
Sbjct: 8   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-------RDGQVVDRFQSLMNAGRRIP 57

Query: 55  SDLLQY--LRD---------ETVMC-----------VAHNSLFERILFKKTLG-IDI-PS 90
           SD++    + +           VM            VAHN+ F++  ++  LG + +   
Sbjct: 58  SDVVALTGITNDMIATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSAD 117

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
             + CT ++AR          L +    L   + 
Sbjct: 118 HAFACTMLVARRIYPDARSHRLSSLAEMLRLPQT 151


>gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
 gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
            E   + D            + + +E V+ V H +  +  +      I         T V
Sbjct: 47  PEEAIVIDTLAVGIDLKPFFELMGNEAVLKVFHAARQDIEIIWHQANII--PHPVFDTQV 104

Query: 99  LARTNGLPSS 108
            A   G   S
Sbjct: 105 AAMVLGYGDS 114


>gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 391

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 32/191 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +    ++       + L    +D + + L D  E S   + L   L D
Sbjct: 25  IAVDTE-----FVRTRTLY-----PKLGLIQI-YDGQQIALIDPLEISDFSA-LKAILTD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E ++ V H+   +   F     +DI  K    +   A   G+ +SL              
Sbjct: 73  ENIVKVLHSCSEDIETFI--CALDIVPKPIFDSQFAAAIVGMGASL-------------- 116

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G A +               T             Y   DV    +L+  L   +  
Sbjct: 117 ----GYAKLVEVMLDIQVDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARA 172

Query: 184 ERDLWLLDQTI 194
           +     +   +
Sbjct: 173 QGRQAWVFAEM 183


>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
 gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 193

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 35/147 (23%)

Query: 5   FIDIET--RSPQPLPKVGVWAYAEQAVITLCAY----------AWDDEPVKLWDRTEQS- 51
            ID ET  RS      +GV        +    Y          A++   V++        
Sbjct: 7   AIDFETANRSLASACALGVVR-VRDGQVVDTRYSLIRPPAGHDAFEPGNVRIHGIRPAEV 65

Query: 52  ---AMPSDLLQYL------RDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS-- 97
                   L  ++       D   + VAHN++F+  + K   +  G D     + CT   
Sbjct: 66  THAPTFDRLWDWMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDPRPWDYACTLRL 125

Query: 98  ------VLARTNGLPSSLKNACLALNF 118
                 + +      +S        + 
Sbjct: 126 ARAAYTLRSYAL-PSASRAAGAEVEDH 151


>gi|262212213|gb|ACY35723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 6   PSDHRFRELFILTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 60  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 115

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 116 IDGLDKLLEAIKKASERGFIKALDGRK 142


>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
 gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
          Length = 292

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 16/232 (6%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--Y 145
                 + T ++A   G    L      L       +   G AL     +    + P   
Sbjct: 111 CTPFPMVDTQLMAAFLG--HGLSTGFATL------VEEYLGVALDKSESRTDWMARPLTQ 162

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       L   Y K   + T   +   +   + +  +    +  N+    +D+  
Sbjct: 163 KQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAV-QQESDLLVSKRIRETNEENAYLDIKG 221

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDM 256
             +L+       K L     +       +    +     L +   G+     
Sbjct: 222 AWQLKPSELAVLKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTSFKK 273


>gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa]
 gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa]
          Length = 331

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 45/193 (23%), Gaps = 25/193 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            +  D E      L             + +   A+ D  + L D      ++       L
Sbjct: 47  IIGFDCE---GVDL--------CRHGTLCIMQLAFPD-AIYLVDAIKGGESLIRACKPAL 94

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL----N 117
               +  V H+   +        GI +     + T +                       
Sbjct: 95  ESSHITKVIHDCKRDSEALYFQFGIKLH--NVVDTQIAYSQIEEQEGRTRLPDDYISFVG 152

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                     G   I+   K  +      D     +    ++       DV     ++ +
Sbjct: 153 LLADPR--YCG---ISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFLLRIYYK 207

Query: 177 LIPLSDGERDLWL 189
           ++   +     +L
Sbjct: 208 MMEKLNQRSLWYL 220


>gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa]
 gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 40/173 (23%), Gaps = 17/173 (9%)

Query: 25  AEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
                + +   A+ D  + L D      ++       L    +  V H+   +       
Sbjct: 65  CRHGALCIMQLAFPD-AIYLVDAINGGESLIKVCKPALESSYITKVIHDCKRDSEALYFQ 123

Query: 84  LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143
            GI +     + T +                               A         ++  
Sbjct: 124 FGIKLH--NVVDTQIAYSLIEEQEG------RTRLPGDYISFVGLLADPRYCGVSYLEKE 175

Query: 144 PYDCTRANHVQAW------QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
                       W      ++       DV     ++ +++     ER LW L
Sbjct: 176 EVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCIYYKMMEKL-NERSLWYL 227


>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 232

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 42/153 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------------------DDEPV 42
           M  +F+D ET    P              I                         D+  +
Sbjct: 1   MRYVFLDTETTGLDPALGH------RIVEIAAVEVCNRRLTDRHFHRYLNPGRESDEGAL 54

Query: 43  KLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPS--- 90
           ++   T +          + S+ L+++ D  +    HN+ F+     + L  I   S   
Sbjct: 55  RVHGLTREFLRDKPVFQDVCSEFLEFIADAEIFI--HNAPFDVGFINRELDLIRFESMQN 112

Query: 91  --KRWICTSVLARTNGLPS--SLKNACLALNFS 119
              + I T VLA+        +L   C      
Sbjct: 113 HCLQIIDTLVLAKELHPGKRNNLDALCERYQID 145


>gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 21/139 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LCA----YAWDDEPVKLW---DR 47
           M+ + +D ET + +      +  A      IT     L      ++W +  V      D 
Sbjct: 1   MNFVAMDFETANAKRASACSIALAIVRDNQITNEFYSLINPEMDFSWRNINVHGIHERDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFKKTL-GIDIPSKRW--ICTSVLA-- 100
            +    P        L     + +AHN+ F+  + K+TL   ++    +  + T   +  
Sbjct: 61  VDAPTFPEVWRHIQPLFSANKLVIAHNASFDNSVLKRTLERYEVQPPHYLTLDTLRTSKQ 120

Query: 101 -RTNGLPSSLKNACLALNF 118
                    L   C  LN 
Sbjct: 121 FYPTLENHKLNTLCDKLNI 139


>gi|308177615|ref|YP_003917021.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI---CTS 97
           + D      +  +L   L     + VAHN  F+    +   +  G+ +P        CT 
Sbjct: 65  VLDAPSFKDLAEELHWRL--SGTVLVAHNLSFDSRFLEAEFRKCGLPVPETFLAQGMCTM 122

Query: 98  VLA--RTNGLPSSLKNACLALNFSEH 121
            ++     G   SL++ C +      
Sbjct: 123 RMSHRYLQGAGRSLQDCCDSFGIDLQ 148


>gi|303246774|ref|ZP_07333051.1| Protein of unknown function DUF1998 [Desulfovibrio fructosovorans
           JJ]
 gi|302491791|gb|EFL51671.1| Protein of unknown function DUF1998 [Desulfovibrio fructosovorans
           JJ]
          Length = 981

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 53/178 (29%), Gaps = 41/178 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPVKLWDRTEQSAMPSDLLQ 59
           +D+ETR  +   +VG W     A     + A       DD  V       Q  +P+ L +
Sbjct: 810 LDVETR--RSAAEVGGW---GNAYKMGISVAVLYDSSLDDFLVY-----RQEELPA-LYE 858

Query: 60  YLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS--VLARTNGLPSSLKNACLAL 116
            L     + V  N   F+  +       D  +   +     V AR  G   SL     A 
Sbjct: 859 ALAQCN-LVVGFNINRFDYKVLAGASPFDHHTLPTLDILEKVHAR-LGYRLSLDGLAKA- 915

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                                    +   +               YCK+DV  TR+L+
Sbjct: 916 ------------------TLGARKSASGLEALAWWKEGRMDEIITYCKQDVAVTRDLY 955


>gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
 gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
          Length = 384

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
            +   + D   +    +   + + +E V+ V H +  +  +      I         T V
Sbjct: 47  PDEALVIDALAEGIDLTSFFELMANEKVLKVFHAARQDIEIIWHRANIV--PHPIFDTQV 104

Query: 99  LARTNGLPSS 108
            A   G   S
Sbjct: 105 AAMVLGYGDS 114


>gi|307184738|gb|EFN71060.1| DNA polymerase subunit gamma-1, mitochondrial [Camponotus
           floridanus]
          Length = 1254

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 37/224 (16%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF---SEHLT 123
           + V HN  ++R   K+   ++    R++ T      +   S L +   +L        L 
Sbjct: 352 IIVGHNVSYDRSRIKEQYWMNCTGSRFLDTM---SLHICVSGLNSYQRSLLLSKKKPDLE 408

Query: 124 KM-----------EEGKALIARFCKGSIDS---PPYDCTRANHVQAWQLFGEYCKRDVEA 169
           K             E   L                 + T  +    + +   YC  D  A
Sbjct: 409 KDNWQSNTSLNSLIEVHKL--YCGSEISKESRDIFVEGTIEDVKNNFNMLMTYCASDAVA 466

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL---VLKLQELIAQERKKL--- 220
           T  + + L PL        +    + + G     ++ +    + + +        +    
Sbjct: 467 THNVLRNLFPLFQERFPHPVTLAGMLELGSAYLPVNSNWQRYLEESESTFDDLNYEAKFT 526

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFL------ITGIDLVDMSE 258
                     ++   +    L M+              +    +
Sbjct: 527 LAKRADTVCHLMHDEKYKQDLWMWDQDWSTQEIKMKAKMPKKVK 570



 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P+   S  +  + ++      + A         +R  + A  G  +V AD+   E  + 
Sbjct: 850  IPQVVVSGTLTRRAVEPTWMTASNAHI-ERIGSELRCMVQAPPGYNIVGADVDSQELWIA 908

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            + I    +K    A           K+  T +  V+       R   KV+  A  Y  G 
Sbjct: 909  SIIGDAHYKSIHGATPFGWMTLIGTKSNGTDMHSVTAKAIGISRDHAKVINYARIYGAGQ 968

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            K  + +       +       KS   F   +  +  
Sbjct: 969  KFAERLLKQFNPSMTDAEATSKSRKMFALTKGKKVF 1004


>gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays]
 gi|194696098|gb|ACF82133.1| unknown [Zea mays]
 gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays]
          Length = 344

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 55/217 (25%), Gaps = 47/217 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         I   A+    + V L D       +       L 
Sbjct: 58  IGFDCE---GVDLCRNGALC------IMQLAF---PDAVYLVDAIEGGKELIQACKPALE 105

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
            + +  V H+   +        GI +     + T +         SL          E  
Sbjct: 106 SDHITKVIHDCKRDSEALYFQFGIKLH--NVMDTQIA-------YSL--------IQEQE 148

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            K   GK   +               R            Y +++      +  R  P   
Sbjct: 149 QK---GKKKTSDDYNYISFVSLLADKRYCG-------IPYPEKE---EVRILLRQDPNFW 195

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
             R        +  R    D+  +L + E + ++  K
Sbjct: 196 TIRP----LSDMMVRAATDDVRFLLNIYEKMMEKLNK 228


>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
 gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 38/166 (22%), Gaps = 20/166 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S+  +D E  S +                 L   +       L D          L    
Sbjct: 780 SEFAVDTEQHSIRSFLGFTA----------LIQISTYKRD-YLIDAIALHDEMETLRPVF 828

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFS 119
            + ++  V H +  + +  ++     I       T+      G P  SL        N S
Sbjct: 829 ANASICKVFHGADSDILWLQR--DFHIYVVNLFDTARACDVLGKPQRSLAYLLQTYCNIS 886

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
            +               +   +          H   +     Y + 
Sbjct: 887 TNKA-----FQKSDWRQRPLPEDILLYARSDAHFLLYIARKLYSEL 927


>gi|262342195|gb|ACY54608.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y    +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGADDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIG 500
                       +  E      L G
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDG 141


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T         
Sbjct: 25  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 84

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGLP 106
              +  +    L D   + VAHN++F+  +  +       + P ++ +CT  L++  GLP
Sbjct: 85  FRDIAQEFSARLAD--RVLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIALSKELGLP 142

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 143 LPNHKLESLAAHFGV 157


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           M+   ID ET + +      +  A  +   +                          P  
Sbjct: 1   MNFTAIDFETANERRNSPCSIGIAVVKNGHVVEKIHHLIRPKEMRFMPINIGIHGIRPAV 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           + +  E   +   +  Y   +  + +AHN+ F+  + +K      ID+P  ++ICT  L+
Sbjct: 61  VENEPEFDKVWEKIKHYF--DGNLVIAHNASFDISVLRKTAELYDIDLPKFKYICTMKLS 118

Query: 101 ---RTNGLPSSLKNACLALNFS 119
                    + L      L + 
Sbjct: 119 KNFYRGIENAKLNTVNDFLGYE 140


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 38/144 (26%), Gaps = 26/144 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLW----------- 45
            +  DIET         + ++      E   +   +   +                    
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMV 480

Query: 46  -DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP--SKRWICTSVLAR 101
            D  E      + + ++ D   + VAHN+ F+          I +P  +   + T  LAR
Sbjct: 481 KDAPELEPKLREFIDFIGDS--ILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELAR 538

Query: 102 TNGLP---SSLKNACLALNFSEHL 122
                     L         S   
Sbjct: 539 FLHPTMKNHRLNTLSAKYKVSLDN 562


>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 231

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 33/228 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------ 54
           + ++ +D ET     +         E   + L         V       +  +P      
Sbjct: 5   LREIVLDTETTGL-DIESG--HRIIEIGCVELIN-RIPTGKVFHKYLNPERDIPYHSFKI 60

Query: 55  ----SDL---LQYLRD---------ETVMCVAHNSLFERILFKKTLGI----DIPSKRWI 94
                +         D            + + HN+ F+       LG      I S R +
Sbjct: 61  HGISEEFLEDKPLFSDVVFEFLDFISGDILIIHNAEFDIKFLNMELGKLNARLISSDRVL 120

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
            T  LAR    G P+SL   C   + S    ++           K  ++      T    
Sbjct: 121 DTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTFLFD 180

Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            +  Q       +         +   P ++   +   L   I++  ++
Sbjct: 181 NECKQDHNSAFIQHKVRNLTCREH-SPSNEEINEHRKLLGKIDNPLWK 227


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 26/148 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWA-YAEQAVIT-----LC-----AYAWDDEPVKLWDRTE 49
           ++ + ID ET + +            +   I      L      AY++ +  +      +
Sbjct: 4   LNFIAIDFETATGKRASVCEAGICVVKDGKIVETKSWLIRPEDNAYSYWNIQIHGIHPED 63

Query: 50  QSAMP------SDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
               P       ++L YL  ET + VAHN+ F+    +K      +D     + CT   A
Sbjct: 64  TENAPSFPCVWQEILTYL-KETPILVAHNAAFDISCIRKSLELYHLDTLDVDYYCTLRAA 122

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEG 128
           R           C  L +     ++ EG
Sbjct: 123 R-----HHYDFECHTLGYLCEQFEIPEG 145


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 39/141 (27%), Gaps = 36/141 (25%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58
           +D+ET        +    V+    Q  +        ++         +   P+ +     
Sbjct: 30  VDVETTGLARDDRIVSAAVYRLDAQGNV--------EDHWYTLVNPRRDPGPTWIHGLTS 81

Query: 59  ------QYLRD---------ETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLA 100
                     D            + VAHN++F+  +  +       +       CT  L+
Sbjct: 82  AMLQDAPLFADIAEEFAGRLADRVLVAHNAIFDWQMIAREYARASATAPVRQRLCTIALS 141

Query: 101 RTNGLP---SSLKNACLALNF 118
           +   LP     L++       
Sbjct: 142 KELNLPLPNHKLESLAAHYGV 162


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 32/146 (21%)

Query: 2   SKLFIDIETRSPQP-----------------LPKVGVWAYAEQAVITLCAYAWD-----D 39
            ++ +D ET    P                 LP    +         + A A       D
Sbjct: 3   REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITD 62

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWIC 95
           + VK  D  + + +  DL+ ++ D     +AHN+ F+R       G      +   RWI 
Sbjct: 63  DKVK--DAPKFAQIVVDLMDFIGDA--PVIAHNAQFDRNFIDHECGRCGHPLLHETRWID 118

Query: 96  TSVLA--RTNGLPSSLKNACLALNFS 119
           T  LA  R  G+ +SL   C     S
Sbjct: 119 TLQLAQKRFPGMANSLDALCKRYKIS 144


>gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 212

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 43/154 (27%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP 54
           M  +  +D ET    P          E AVI L          ++ DR +        +P
Sbjct: 8   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-------RDGQVVDRFQSLMNAGRRIP 57

Query: 55  SDLLQY--LRD---------ETVMC-----------VAHNSLFERILFKKTLG-IDI-PS 90
           SD++    + +           VM            VAHN+ F++  ++  LG + +   
Sbjct: 58  SDVVALTGITNDMIATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSAD 117

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
             + CT ++AR          L +    L   + 
Sbjct: 118 HAFACTMLVARRIYPDARSHRLSSLAEMLRLPQT 151


>gi|229472347|gb|ACQ72688.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + N     +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNRRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 211

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 34/146 (23%), Gaps = 31/146 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            + +D+ET         + ++G     +  ++       +                   +
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 69

Query: 45  WDRTEQSAMPSDLLQYLRDETV-----MCVAHNSLFERILFKKTLGIDIPSKRW----IC 95
            D      +    + +L            V HN  F+           I    +      
Sbjct: 70  ADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTR-HIAGCGFACADYD 128

Query: 96  TSVLARTNGL---PSSLKNACLALNF 118
           T  ++R          L +  +    
Sbjct: 129 TMQISRALFPAQRHHRLADLIVRFGI 154


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 55  SDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---P 106
            ++L+  R   E  + VAHN+ F+        +  GI       I T  LAR        
Sbjct: 489 EEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYPEFKR 548

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 549 FGLGVLSKKFGVS 561


>gi|310789378|gb|EFQ24911.1| DNA polymerase family A [Glomerella graminicola M1.001]
          Length = 1148

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 50/525 (9%), Positives = 112/525 (21%), Gaps = 49/525 (9%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L++S    KM +GK         +    P                 + K D   
Sbjct: 464 DPWLKQLDWSGQEIKMVKGKKKNDLPRPAARQKKPGMPQWYKD--------LFPKNDAPI 515

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
              +  R+ P+              +  G+   ++                 + +++   
Sbjct: 516 NLTVRTRIAPILLKLSWDNHPLFWSDKYGWTFRVERSEASDYQ--------QKQMIECDF 567

Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS---- 285
               S           F          +      +            L      +     
Sbjct: 568 SDSESDAALRKEHGVFF-KLPHKDGPTARCVNP-MAKGYLSYFEKGTLSSEYSYAKEALE 625

Query: 286 -GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----IL 340
             ++     +  + + S   +               SG    P+ +      +      +
Sbjct: 626 MNASCSYWISARDRIMSQ--MVVYENDIPGRDNKASSGKEKDPEQVQGYILPQIIPMGTI 683

Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400
           T+                     ++S + A  G   V AD+   E  + + + G+     
Sbjct: 684 TRRAVENTWLTASNAKKNRVGSELKSMVKAPPGYSFVGADVDSEELWIAS-LVGDATFKL 742

Query: 401 AFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCG 456
              N          KA  T +   +       R   KV      Y  G K    +     
Sbjct: 743 HGGNAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKVFNYGRIYGAGLKFAGQLLRQFN 802

Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR----- 511
            +L +   N  +   +   +  +++   +  +       +  +    E      R     
Sbjct: 803 PNLSEKETNETAARLYAKTKGTKTNRSVLSKRPFWRGGTESFLFNKLEEFAAQERPRTFV 862

Query: 512 ----------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561
                      +                               +          R    V
Sbjct: 863 LGAGITEALMRRFINQNGYLTSRINWAIQSSGVDYLHLLIVGMDYLTRRFNIEARLAITV 922

Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606
               R LV    K   +      +   R          ++ Q+++
Sbjct: 923 HDEIRYLVKDHDKYRAAMALQVANVWTRAMFSQQVGINDLPQSVA 967


>gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107]
 gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107]
          Length = 285

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 23/113 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAW-------DDEPVKLWDRT---- 48
           L ID ET   +P     V   A    +     L   ++         EP+          
Sbjct: 57  LIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETNAAEPINRIPAAVTRL 116

Query: 49  --EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTS 97
                         L    V+ VAHN+ F+R  F +    ++P  ++ W+C+ 
Sbjct: 117 SQPWKEALLWFQNLLDAADVL-VAHNAAFDRQWFGR---GELPAVTQPWLCSM 165


>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Enterococcus faecalis TX1467]
          Length = 240

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 55  SDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---P 106
            ++L+  R   E  + VAHN+ F+        +  GI       I T  LAR        
Sbjct: 489 EEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYPEFKR 548

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 549 FGLGVLSKKFGVS 561


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 55  SDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---P 106
            ++L+  R   E  + VAHN+ F+        +  GI       I T  LAR        
Sbjct: 489 EEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYPEFKR 548

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 549 FGLGVLSKKFGVS 561


>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 175

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
 gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
          Length = 186

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 27/146 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVW-AYAEQAVITLCAYAW---DDEPVKLWD-------RTEQ 50
             + ID ET + Q      V  A  E  VI    Y+    ++               T +
Sbjct: 3   KIVAIDFETANNQMASVCSVGVAVMEDGVIIDHYYSLIKPEENVGYFSPYNIRIHGITAR 62

Query: 51  S--------AMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS-V 98
                     + S+L  Y  D  +  VAHN+ F+    K+     G  IP   +  T  +
Sbjct: 63  DVKGAPTFSEIYSELTGYFEDAVI--VAHNARFDMSCLKQTCLNTGKKIPVLEYFDTVEL 120

Query: 99  LARTNGL--PSSLKNACLALNFSEHL 122
             R         L + C  +      
Sbjct: 121 CKRVFSNLEHHRLNDVCEYIGIELDH 146


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 55  SDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---P 106
            ++L+  R   E  + VAHN+ F+        +  GI       I T  LAR        
Sbjct: 489 EEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYPEFKR 548

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 549 FGLGVLSKKFGVS 561


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 29/142 (20%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVI-----------TLCAYAWDD----EPVK 43
            +  DIET         + ++G         I               +  +         
Sbjct: 538 YVVFDIETTGFSPEKNRIIEIGAVKVT-DGKITDKFSTFVNPDVPIPFDIEKLTSINDAM 596

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
           +    +   +    L+++ D     VAHN+ F+           G+       + T  +A
Sbjct: 597 VLPYPKIDVILPQFLEFVGDAA--LVAHNASFDVGFIGHYAEKQGLAFNPT-VLDTVTMA 653

Query: 101 RTNGLPSS---LKNACLALNFS 119
           R      +   L     ALN S
Sbjct: 654 RLLLPNLNRFKLDTVAKALNIS 675


>gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56']
 gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56']
          Length = 403

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 51/189 (26%), Gaps = 18/189 (9%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHN 72
             +   G++ Y     +     A+ +         +   +P + L + L       V H+
Sbjct: 30  VDVEANGLFVYR--PRLCTVQLAFREGDGIAVGIVDALRVPVAPLARLLGAAGPPKVLHD 87

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALI 132
             F+  +  +      P      TSV AR  G  ++      AL  SE   K    K L 
Sbjct: 88  LTFDARMLAEA---GAPLGGAHDTSVAARMLGCAAT--GLG-ALLLSELDVK--VDKQLQ 139

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-------DVEATRELFKRLIPLSDGER 185
                            A+ V+                  D E   E   +L       R
Sbjct: 140 QHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEIEEECAYKLATALGPPR 199

Query: 186 DLWLLDQTI 194
           D       I
Sbjct: 200 DPRPAYARI 208


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 91/346 (26%), Gaps = 28/346 (8%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF-ERILFKKTLGI 86
             + L    +D E V L D T  +   S     L D  V+ V H + + +  +F      
Sbjct: 47  PKLGLIQL-YDGERVSLIDPTTITDF-SPFTALLADINVIKVLH-ACYEDLEVFSHYFQQ 103

Query: 87  DIPSKRWICTSVLARTNGLPSS--LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSP 143
               +  + T V+A     P S  L +     L           G +      +   +  
Sbjct: 104 --LPEPIMDTQVMAGFLAFPHSTGLASLIRHYLALEIDK-----GASRTDWLARPLSE-- 154

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
                +      W L   Y K  VE  +  ++  +   D    L             +++
Sbjct: 155 --KQLQYAAADVWYLLPLYEKMAVELAKTRWQSAVEF-DCGLLLEKQRCVKEAESAYLNV 211

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
               +L  +     K L +   +       +                  +   +      
Sbjct: 212 PNAWRLSPVELMRLKLLAKWRQEEAVKRDLALNFVVHNESL------WTVAKHAPKNTSE 265

Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323
           +          +  I  +      A           +   RL    ++    +T R    
Sbjct: 266 LADLGLHPHEIR--IHGKTMLKLVAQATREPEQTYPAVIRRLSEDPRYKSTLKTLRQKLK 323

Query: 324 VFQPQNL-PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
              P +L P     +  L + ++ +   +   + L       R+  
Sbjct: 324 AISPPDLAPEIIAGKRDLEKLMKWVWLQDNNPNKLPDLLRNWRAEF 369


>gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
 gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
          Length = 823

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 28/145 (19%)

Query: 2   SKLFIDIETRSPQP---LPKVGVWAYAEQAVITL-CAYAWDDEPV---KLWDRT------ 48
               +D+E  S      + +VG+    EQ  I        +        + D T      
Sbjct: 9   KYAVVDLEATSASTTAQIIQVGI-VIVEQGQIVQTYQTDVNPHEALTQHIIDLTGITDQQ 67

Query: 49  -----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
                + S +  D+ Q ++D   + VAHN  F+  L  + L   G ++ + R   T  L+
Sbjct: 68  LAQAPDFSQVAGDIFQLIQD--CIFVAHNVKFDANLLAEQLFLEGYELRTPRV-DTVELS 124

Query: 101 RTNGLP---SSLKNACLALNFSEHL 122
           +          L +    L+     
Sbjct: 125 QVFFPTLERYRLSDLAKYLDLDLTH 149


>gi|268316050|ref|YP_003289769.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
 gi|262333584|gb|ACY47381.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
          Length = 167

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLR 62
           LF D+ET   +P         A    + L       EP+ LW  T    +  +   +   
Sbjct: 9   LFFDVETSGLRP------DRGAAIVELALLGAR---EPLLLWKGTSAQRLQRAQFRELFA 59

Query: 63  D--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTNGL---PSSLKNACL 114
              E V+ V HN  F+          LG+ +P  R+I T  LAR          L     
Sbjct: 60  HVREGVI-VGHNLRFDFWFVTYEAGRLGLAVPPIRFIDTLGLARRLLPEQADYRLVALLH 118

Query: 115 ALNFSEHL 122
           AL      
Sbjct: 119 ALGIEPDK 126


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLART 102
             S    ++L   ++     + VAHN+ F+         K   I   +   I T  L+R 
Sbjct: 486 HGSKSEEEVLTLFKEFAGDHILVAHNASFDMGFLNTSNAKH-NIPDATNPVIDTLELSRF 544

Query: 103 NGL---PSSLKNACLALNFS 119
                    L         +
Sbjct: 545 LHPQYKSHRLNTLAKKYGIN 564


>gi|262212121|gb|ACY35677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212127|gb|ACY35680.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +  ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMAGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKDAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 TDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|229472233|gb|ACQ72631.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342135|gb|ACY54578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 35/150 (23%)

Query: 1   MSKLFIDIET-----RSPQPLP-------KVGVWAYAE-QAV---------ITLCAYAWD 38
           M  + ID+ET      S   +        K+    Y               I   +    
Sbjct: 1   MDFVAIDVETANEQRSSICSIALLKFQDNKMRDAIYTHINPETYFSSINTSIHGIS---- 56

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWIC 95
                + D  +   M   ++++L +   + VAHN+ F+        K   + +PS ++ C
Sbjct: 57  --EEDVMDSPKMYQMHEAIIRFLDN--HIIVAHNTSFDMYALCDSFKKYNLPLPSNQYFC 112

Query: 96  TSVLAR--TNGLPSSLKNACLALNFSEHLT 123
           T  L++   N     L++     +      
Sbjct: 113 TYRLSKDLYNLPSYRLQDLAEHFDIKNEEY 142


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPSS--LK 110
           D +  L     + VAHN+ F+     +     G   P++   CT    R  G P S  L 
Sbjct: 97  DAVAALLAGADLVVAHNAAFDLGFLAREFRAAGRPDPARPTYCTMEAYRRRGEPGSSALD 156

Query: 111 NACLALNF 118
             C  +  
Sbjct: 157 AVCRRVKL 164


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
           protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 1655

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 41/160 (25%), Gaps = 25/160 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             LF D+E                E   I        +E V       +    + L Q  
Sbjct: 6   KFLFFDLE-------YNPETQKVREYGYILG------EEEV-------RERNTAKLEQA- 44

Query: 62  RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +    V HN    +  + ++   ID P+   + T +L+                  +E
Sbjct: 45  ASKAKYIVGHNVLRHDAPILRQYFSIDFPNIHALDTLMLSSLLFPRKPYHKLRKEYLHNE 104

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                        + CK  ++              + LF 
Sbjct: 105 DEPSNPL---EDTKLCKKLLEDCIKKWDNYPWQLQYLLFQ 141


>gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345]
 gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345]
          Length = 369

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 71/270 (26%), Gaps = 55/270 (20%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L +D E     T                 A + L   A+D + + L D    S +     
Sbjct: 26  LVLDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPLAVSNL-ELFW 68

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q L  E+ + + H+   +  +F +             + + A   G+   L         
Sbjct: 69  QLLSKESSVKLLHSCSEDLEVFARYGN--CQPTNLFDSQIAAGLAGMGHGL--------- 117

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +               T        +    Y   DV    +L+ +L+
Sbjct: 118 ---------GYAKLVEQTLEVSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLV 168

Query: 179 PLSDGERDL-WLLDQTINDRGYRIDL----------DLVLKLQELIAQERKKLDEDIVKL 227
            L + +  L W+ ++ +     R+D               +L        + L +  +K 
Sbjct: 169 KLLEEQGRLDWVYEEGVRMTQGRLDTPEPETAYLKVKNAFQLSSNQLAVLRDLSQWRLKR 228

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMS 257
                 +          +           +
Sbjct: 229 ALQKDLALGFVVKDHALI--ALAKKQPKST 256


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 59/233 (25%), Gaps = 49/233 (21%)

Query: 2   SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAY-------------AWDDEPVK 43
             + +D ET      S   +    +   A    I    +             + +   +K
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGA--VEIIDRCFTGNNFHVYIQPGRSIESGALK 62

Query: 44  LWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI---DIPSKRW- 93
           +   T        +  D+     +  +  + V HN+ F+     + L I    I    + 
Sbjct: 63  VHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINTFC 122

Query: 94  --ICTSVLARTNGLPSS--LKNACLALN--------FSEHLTKMEEGKALIARFCKGSID 141
             I T  +AR         L   C             S  +     GK            
Sbjct: 123 SIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGK---LYLLMTGGQ 179

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +     N+ + ++   +   +    T  +   L P            Q +
Sbjct: 180 DSLFSDNTINYKENFKKLKK-NIQLKNNTLRI---LHPTLKENDLHEKYLQYM 228


>gi|189208179|ref|XP_001940423.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976516|gb|EDU43142.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1526

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 59/559 (10%), Positives = 131/559 (23%), Gaps = 95/559 (16%)

Query: 107  SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
             +       L++S    KM +GK         +    P                 + K D
Sbjct: 821  YNNDPWLSQLDWSGQEIKMVKGKKKDDPPRPAARQKKPGMPKWYKD--------LFAKSD 872

Query: 167  VEATR----ELFKRLIPLSDGERDLWLLDQTINDRGYRID---------LDLVLKLQELI 213
               T      +   L+ L+     L   D+        +D         +  +   +E  
Sbjct: 873  GPMTLTVRTRITPILLKLAWDGHPLVWSDKHGWTYKVPMDEVFAYNDKGMKQLDMSEEEN 932

Query: 214  AQERKKLDEDIVKLTDGIIRSSR-QTYALRMYL--FLITGIDLVDMSEGTLKSILSHSNI 270
             + R   +    K+       +R      + YL  F    +            + +  + 
Sbjct: 933  LKLRDDTENAYFKIPHKDGPLARCANPLAKGYLQYFEKGKLGSEYTYAKEALEMNASCSY 992

Query: 271  TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330
                   I  R       ++    + +  S   +         A +  +    + Q    
Sbjct: 993  ------WISARDRIMSQMVVYDKDVPKK-SKVSKAPKLTSASTAPKGKKVGFILPQI--- 1042

Query: 331  PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390
                     +T+                     ++S + A  G   V AD+   E  + +
Sbjct: 1043 ----IPMGTITRRSVENTWLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSQELWIAS 1098

Query: 391  WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAK 446
             + G+        N          KA  T +   +       R   KV      Y  G K
Sbjct: 1099 -LIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAAILGISRNDAKVFNYGRIYGAGLK 1157

Query: 447  VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
               T+       L        +   +++ +  +++   + ++       +  +    E  
Sbjct: 1158 FASTLLRQFNPSLTDAQTTKTAEDLYKNTKGMKTNRKQLHERSFWRGGTESFVFNKLEDF 1217

Query: 507  KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
             +  R +          +         +   +S             +     ++ L    
Sbjct: 1218 AEQERPRTP--------VLGAAITEALQRRYLSKGGFMTSRINWAIQSSGVDYLHLL--- 1266

Query: 567  RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626
                         ++  T +                                     + +
Sbjct: 1267 ----------IVSMDYLTRRF-------------------------------NLDCRLSI 1285

Query: 627  TVHDEIVSETPDTPYFSVG 645
            TVHDEI     +   +   
Sbjct: 1286 TVHDEIRYLVKEEDKYKAA 1304


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 16/117 (13%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHN-SLFERILFK-KTLGIDIPS--KRWICTSVLARTNG 104
           +Q      +  YL D   + VAHN   F+    + +    +I       I T  L+    
Sbjct: 480 DQQQGLEKIRNYLDD--CVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLCLSWALN 537

Query: 105 L---PSSLKNACLALNFSEHL-------TKMEEGKALIARFCKGSIDSPPYDCTRAN 151
                 +L N C  L                E  K +   F K   +      T  +
Sbjct: 538 PLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFKKQLKEMGINTLTEID 594


>gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2]
 gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3]
 gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2]
 gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3]
          Length = 183

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIETRS-------PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+    D ET S          + KV      ++            E    W        
Sbjct: 7   MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 61

Query: 46  ---DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D       P    Q         + VAHN+ F+  +        G++ P+   +CT 
Sbjct: 62  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 121

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
             +R          L   C  LN +
Sbjct: 122 KTSRKLFPEFPNHKLNTVCENLNIT 146


>gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8]
 gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11]
 gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855]
 gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860]
 gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411]
 gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470]
 gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8]
 gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11]
 gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411]
 gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860]
 gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855]
 gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470]
 gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000]
 gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017]
 gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141]
 gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244]
 gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012]
 gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342]
 gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346]
 gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF]
          Length = 188

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIETRS-------PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+    D ET S          + KV      ++            E    W        
Sbjct: 12  MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 66

Query: 46  ---DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D       P    Q         + VAHN+ F+  +        G++ P+   +CT 
Sbjct: 67  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
             +R          L   C  LN +
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT 151


>gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583]
 gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1]
 gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5]
 gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96]
 gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1]
 gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6]
 gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712]
 gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613]
 gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248]
 gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134]
 gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102]
 gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583]
 gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1]
 gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5]
 gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96]
 gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1]
 gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6]
 gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712]
 gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613]
 gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Enterococcus sp. 7L76]
 gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134]
 gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248]
 gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102]
 gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137]
 gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027]
 gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031]
 gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312]
 gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645]
 gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B]
 gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A]
 gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family
           protein [Enterococcus faecalis 62]
 gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIETRS-------PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+    D ET S          + KV      ++            E    W        
Sbjct: 1   MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 55

Query: 46  ---DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D       P    Q         + VAHN+ F+  +        G++ P+   +CT 
Sbjct: 56  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 115

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
             +R          L   C  LN +
Sbjct: 116 KTSRKLFPEFPNHKLNTVCENLNIT 140


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 48/155 (30%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWD-----RTEQSAMPSD 56
            +  D+ET                   I    A       V   D          ++P+ 
Sbjct: 385 FVVFDLETTGLNKFKN----------EIIEIGAVKVKSGKV--IDEFSSFVKPGESIPNK 432

Query: 57  LLQY---------------------LR--DETVMCVAHNSLFERILFKKTLGIDIPSK-- 91
           + +                      L   D +++ VAHN+ F+    +  L         
Sbjct: 433 ITELTGITNEMVSRAPDIEGVIGDFLEFIDGSIL-VAHNADFDYGFLQVALKKTGQGDIS 491

Query: 92  -RWICTSVLARTNGL---PSSLKNACLALNFSEHL 122
              + T  L+R          L      LN     
Sbjct: 492 YPVLDTLTLSRALLPDLSNHKLNTLARHLNVRLDN 526


>gi|262212201|gb|ACY35717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   I + G+ +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDHRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSHDKPLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAVKKASERGFIKALDGRK 143


>gi|229472307|gb|ACQ72668.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR 101
            D     ++ +D   ++ D   + VAHN+ F+          LG        I T  L+R
Sbjct: 478 IDAPPIESVLNDFKDFVGDA--IYVAHNASFDMGFIDTGFDRLGYGPTENGVIDTLELSR 535

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 536 TINTEMGKHGLNFLAKKYGVE 556


>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
           EF01-2]
 gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 237

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 10/76 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKK------TLGIDIPSKRWICTSVLARTN-- 103
            +  D+LQYL+      + HN+ F+     K         +    +R   T  +A+    
Sbjct: 73  ELVDDILQYLQ--GAELIIHNAAFDVGFLNKELELAGHPALAHCVERVTDTLAMAKELYP 130

Query: 104 GLPSSLKNACLALNFS 119
           G  +SL   C  L   
Sbjct: 131 GKRNSLDALCDRLGVD 146


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 12/84 (14%)

Query: 46  DRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSV 98
           D    S    ++ +  +   D  +M V HN  F+        ++    DI     I T  
Sbjct: 478 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+R          L         S
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVS 559


>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 794

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            + + + + L D   + VAHN+ F+  L +K+    G++      + T  LAR       
Sbjct: 74  EVAAKVRELLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 131

Query: 107 -SSLKNACLALNFSEHL 122
              L++    L+ +   
Sbjct: 132 KYGLESLSEKLDLAHDH 148


>gi|317486188|ref|ZP_07945025.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316922557|gb|EFV43806.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 1021

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMPSDLLQY 60
             + +D+ETR  +   +VG W    +A +   + A   D     +   EQ  +P+   + 
Sbjct: 847 RFMVLDVETR--RSAAEVGGW---HRADLMGVSVAVLYDSKGDCFTEYEQEDLPAMFERL 901

Query: 61  LRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKNACLALN 117
              E  + +  NS  F+  + +   G D+ S   +   ++   +      SL N   A  
Sbjct: 902 --REAGLVIGFNSSRFDYAVLQPFAGYDLRSLPTLD-MLVEVKKRLSYRVSLDNLARA-- 956

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                                   +      +           EYC++DVE TR+++
Sbjct: 957 -----------------TLNAPKSADGMQALQWWKEGNLASIAEYCRKDVEITRDVY 996


>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
 gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
          Length = 202

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIET-----RSPQPLPKV------------------GVWAYAEQAVITLCAYAW 37
           M+ + ID ET      S   +  V                  G+   +    I   +   
Sbjct: 18  MNYIAIDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGIS--- 74

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94
              P  + D    + +  +L + L     + VAHN+ F+  + K +L  +     +    
Sbjct: 75  ---PKDVTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLLANRLQAPYFRTC 129

Query: 95  CTSVLAR----TNGLPSSLKNACLALNFS 119
           CT  +AR           L      LN +
Sbjct: 130 CTVRIARKVWPALDD-HKLNTVGAHLNIN 157


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 12/84 (14%)

Query: 46  DRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSV 98
           D    S    ++ +  +   D  +M V HN  F+        ++    DI     I T  
Sbjct: 478 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+R          L         S
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVS 559


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 12/84 (14%)

Query: 46  DRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSV 98
           D    S    ++ +  +   D  +M V HN  F+        ++    DI     I T  
Sbjct: 471 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 528

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+R          L         S
Sbjct: 529 LSRMLHPERKNHKLDTLAKQYKVS 552


>gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
 gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
          Length = 420

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 26/127 (20%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T  P                + +   A  D      D   +    +   
Sbjct: 61  ITVDTEFLRETTYYPL---------------LCVIQMASPD-EAIAIDALAEGIDLNSFF 104

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLAL 116
             + +E V+ V H +  +  +     GI         T V A   G   S         +
Sbjct: 105 TLMSNEGVLKVFHAARQDIEIIWHQAGII--PHPVFDTQVAAMVLGYGDSIAYDALVERV 162

Query: 117 -NFSEHL 122
                  
Sbjct: 163 TGHRPDK 169


>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 39/155 (25%), Gaps = 38/155 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC------------------AYAWDDEPVK 43
            ++ +D ET          V+       I                       A D+E + 
Sbjct: 9   RQIILDTETTGMNQGAGA-VYLGHRIIEIGCVEVVNRRLTGRTFHQYINPGQAIDEEAIA 67

Query: 44  LWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR--- 92
           +   T            +    L ++R      VAHN+ F+         + +P      
Sbjct: 68  VHGITNDRVAGEPRFHEIVGGFLDFIR--GAELVAHNASFDMSFINHEFSMLVPQGPKVE 125

Query: 93  ----WICTSVLARTNGLPS--SLKNACLALNFSEH 121
                + +  +A+        +L   C        
Sbjct: 126 DICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNT 160


>gi|262342119|gb|ACY54570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
          Length = 329

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 26/223 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E  S +    +            L   +   E   + D  E       L +  
Sbjct: 92  KEFALDLEHHSYRSFLGLT----------CLVQISTRTED-FILDALELRGDLYVLNETF 140

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSE 120
            D  ++ V H +  +    ++  G+ +       T   AR   L   SL +         
Sbjct: 141 TDPAIIKVLHGADSDVEWLQRDFGLYL--VNVFDTHQAARQLSLGRHSLDHL-------- 190

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K+        ++        P      N+ +    +  Y    V     L++R   L
Sbjct: 191 --LKLYCNVDANKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRVRTE--LWERGNEL 246

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
               + +W   + I  + Y   +       EL  +++K L+  
Sbjct: 247 PAQLQVVWQRSRDICLKKYLKPIFTENSYLELYRKQKKHLNTQ 289


>gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
 gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
          Length = 346

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D T    M + +   L+D +V+ V H    +  +F+ + G  
Sbjct: 14  PQLGLIQL-YDGQTLSLIDPTVIDDMTAFVH-LLQDTSVLKVLHACGEDLEVFQNSFG-- 69

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      LN     ++            +   D   
Sbjct: 70  CLPYPMVDTQLMAAFLGHGLSTGFAALVNEYLNVELDKSESRT-----DWLARPLTD--- 121

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                      + L   Y +     T+  + +     + +       +T+N     +D+ 
Sbjct: 122 -KQLEYAAADVYYLLPLYEQLFENITQAGWWQ-AAQQESDLIASKRIKTVNPERAYLDVK 179

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
              +L+       K L    +K       +    +     L
Sbjct: 180 GAWQLKPKELAILKPLATWRLKEALKRDLALNFIFKENDLL 220


>gi|313801939|gb|EFS43173.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA2]
          Length = 412

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDALFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|229472177|gb|ACQ72603.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472327|gb|ACQ72678.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472427|gb|ACQ72728.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342091|gb|ACY54556.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342095|gb|ACY54558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342101|gb|ACY54561.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342121|gb|ACY54571.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342139|gb|ACY54580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 12/84 (14%)

Query: 46  DRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSV 98
           D    S    ++ +  +   D  +M V HN  F+        ++    DI     I T  
Sbjct: 478 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+R          L         S
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVS 559


>gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601]
 gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601]
          Length = 385

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 46/210 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+    DE   L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAYPGQGDENAVLVDPLAGELSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             LL+  R+  V+ V H +  +  +F   +   +       T V A   G          
Sbjct: 67  EPLLELFRNTNVVKVFHAARQDLEIF--FIDHGVIPDPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ R  K  +D        +          +Y   DV   R ++
Sbjct: 118 QVGYET----------LVKRIAKQGLDKSSRFTDWSRRPLTDAQ-KKYALADVTHLRVIY 166

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
           + L    +       +     + G   D +
Sbjct: 167 EYLAAELERTGRARWVA---EELGVLTDPE 193


>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 237

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 32/150 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            ++ +D ET     L   G     E   + L         + L+   E+ +    L    
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPERDSHEDALKVHG 59

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTL------GIDIPSKRWI 94
              ++LRD+                   + HN+ F+     K L       +       I
Sbjct: 60  ISNEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 95  CTSVLARTN--GLPSSLKNACLALNFSEHL 122
            T  +A+    G  +SL + C  L      
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSS 149


>gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
          Length = 177

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLC--AYAWDDEPVKLWDRTEQS 51
           M+ + +D ET      S   L  V V      ++           +D   +++   T   
Sbjct: 1   MNFIAMDFETANRHPESACSLALVMVRNNKIIDRFYTV-INPQMPFDGRNIQVHQITPDD 59

Query: 52  ----AMPSDLLQ---YLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                  +++      L    ++  AHN+ F+  + K +     ID P    I T   +R
Sbjct: 60  VKDAPTMAEVWPKIKALYQPGMLVAAHNARFDANVLKMSLARYDIDEPHYLVIDTLKTSR 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     AL+  
Sbjct: 120 LFEPDLPNHKLNTVAEALDVE 140


>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
 gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
          Length = 244

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 43/158 (27%), Gaps = 43/158 (27%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVH-YEGH-KIIEIG-AVEVVNRRLTGRHFHVYLRPDRLVDP 60

Query: 41  PVKLWDRTEQSAMPS-----DLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPS 90
                       +       D+     D       V HN+ F+        + LG DIP 
Sbjct: 61  EAYNIHGISDEFLVDKPTYADVADDFLDFIRGAELVIHNASFDIGFMDYEFRLLGRDIPK 120

Query: 91  KRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
               CT     ++AR    G  ++L   C         
Sbjct: 121 TETFCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSK 158


>gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
 gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
          Length = 341

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 16/232 (6%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--Y 145
                 + T ++A   G    L      L       +   G AL     +    + P   
Sbjct: 111 CTPFPMVDTQLMAAFLG--HGLSTGFATL------VEEYLGVALDKSESRTDWMARPLTQ 162

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       L   Y K   + T   +   +   + +  +    +  N+    +D+  
Sbjct: 163 KQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAV-QQESDLLVSKRIRETNEENAYLDIKG 221

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDM 256
             +L+       K L     +       +    +     L +   G+     
Sbjct: 222 AWQLKPSELAVLKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTSFKK 273


>gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
 gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
          Length = 977

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 45/144 (31%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-------PVKLWDRTEQSAMPSDLL 58
           +D ET               +   +   + A              +        +P++++
Sbjct: 52  LDTETTGLS----------RQDDELIEISAAVLSGREVTERFETFVRP---SKPIPAEIV 98

Query: 59  QY--LRDETV--------------------MCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +   +RD  V                      +AHN+ F+R   +   G    S  WI +
Sbjct: 99  ELTGIRDADVRDAPPATQAVRDLARFVGGRPVIAHNAAFDRAFIEAVPGGSDASDIWIDS 158

Query: 97  SVLARTNGL---PSSLKNACLALN 117
             L+R          L +      
Sbjct: 159 LALSRIALPRLASHRLSSLAETFG 182


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 8/75 (10%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---PS 107
             +  +L         AHN+ F+        +  GI         T +LA+         
Sbjct: 436 EAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSI-DTLILAQNLLPDLGKY 494

Query: 108 SLKNACLALNFSEHL 122
            L      L      
Sbjct: 495 KLDIVAEHLRLPPFK 509


>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
 gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 330

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 37  WDDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLG 85
            D  P  +   T +          + +DL + LR      VAHN  F+        + +G
Sbjct: 60  VDPGPTHVHGLTAEMLEGAPRFGDIVADLAELLR--GRTLVAHNVGFDYSFLTAEAELVG 117

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHL 122
            ++P    +CT  LAR   L      L+         +  
Sbjct: 118 AELPIDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLK 157


>gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY]
 gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
          Length = 237

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 32/150 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            ++ +D ET     L   G     E   + L         + L+   E+ +    L    
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPERDSHEDALKVHG 59

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTL------GIDIPSKRWI 94
              ++LRD+                   + HN+ F+     K L       +       I
Sbjct: 60  ISNEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 95  CTSVLARTN--GLPSSLKNACLALNFSEHL 122
            T  +A+    G  +SL + C  L      
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSS 149


>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 42/155 (27%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLC------------------AYAWDDEP 41
            ++ +D ET     + + G   Y       I                       + D E 
Sbjct: 9   RQIILDTETTG---MNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINPGQSIDPEA 65

Query: 42  VKLWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GI 86
           + +   T++          +  + + +++   +  VAHN+ F+                 
Sbjct: 66  IAVHGITDERVANEPRFHQIAQEFIDFIQGAEI--VAHNASFDVSFMDHEFSMLQPRGPK 123

Query: 87  DIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
                  + +  +A+        +L   C      
Sbjct: 124 TKDITDILDSLAIAKRLHPGQKNNLDALCKRYGID 158


>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
 gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
          Length = 186

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIET-----RSPQPLPKV------------------GVWAYAEQAVITLCAYAW 37
           M+ + ID ET      S   +  V                  G+   +    I   +   
Sbjct: 2   MNYIAIDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGIS--- 58

Query: 38  DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94
              P  + D    + +  +L + L     + VAHN+ F+  + K +L  +     +    
Sbjct: 59  ---PKDVTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLLANRLQAPYFRTC 113

Query: 95  CTSVLAR----TNGLPSSLKNACLALNFS 119
           CT  +AR           L      LN +
Sbjct: 114 CTVRIARKVWPALDD-HKLNTVGAHLNIN 141


>gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 163

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 24/141 (17%)

Query: 1   MS-KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY--AWDDEPVKLWDR---------- 47
           M   + ID ET + +      +     +  +   ++      EP                
Sbjct: 1   MKDFVAIDFETANSERSSVCSIGIVIVRNGVITDSFYSTIQPEPNYYSYWCTKVHGLTKS 60

Query: 48  -TEQSAMPSDLLQYLRDETV---MCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
            TE+S    ++ + +    +     VAHNS F+    K   +   +D P   +  T   A
Sbjct: 61  DTEESPCFHEIWKQIE-PKIGNLPFVAHNSRFDESCLKAVFRVYQMDYPDYIFFDTLAAA 119

Query: 101 RT---NGLPSSLKNACLALNF 118
           R    +     L        +
Sbjct: 120 RRVLPHLPNHQLHTVAQECGY 140


>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
 gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 794

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            + + + + L D   + VAHN+ F+  L +K+    G++      + T  LAR       
Sbjct: 74  EVAAKVRELLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 131

Query: 107 -SSLKNACLALNFSEHL 122
              L++    L+ +   
Sbjct: 132 KYGLESLSEKLDLAHDH 148


>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
 gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
          Length = 239

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 45/152 (29%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET   +P                  L       Y      I       D+  
Sbjct: 1   MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPDREI-------DEGA 53

Query: 42  VKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPS 90
           +++   T +        + +  D L ++ D     V HN+ F+        + L   +  
Sbjct: 54  IEVHGITNEFLADKPVFAQIADDFLTFIGDAE--LVIHNAPFDVGFLDHELRLLNRGLAP 111

Query: 91  KR----WICTSVLARTNGLPS--SLKNACLAL 116
            R     + T V AR        +L   C   
Sbjct: 112 IRERCGVLDTLVYARRKHPGQKNNLDALCKRY 143


>gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
 gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
          Length = 190

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 26/142 (18%)

Query: 3   KLFIDIET--RSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--------VKLW---DRTE 49
            L ID ET  R+ + +   G    +E  V+T      + E         V      D  +
Sbjct: 5   TLAIDFETANRNSRSICAFGWSVLSEGRVVTSEQVLINPEEDFDAGNIRVHGIRPSDVWD 64

Query: 50  QSAMPSD-----LLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLA 100
             A+P       L + +     + +AHN+ F+        +K     +P+ ++ CT  L+
Sbjct: 65  APALPEAMEAHGLFKLIEKAE-LVIAHNAAFDMGALQKAVQKYDLYQMPTFQYGCTVKLS 123

Query: 101 RTN---GLPSSLKNACLALNFS 119
           R          L      LN S
Sbjct: 124 RKLYPWLPNHKLNTMAEFLNVS 145


>gi|332029311|gb|EGI69294.1| DNA polymerase subunit gamma-1, mitochondrial [Acromyrmex echinatior]
          Length = 1247

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 5/156 (3%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            +P+   S  +  + ++      + A         +R  + A  G  +V AD+   E  + 
Sbjct: 859  IPQVVVSGTLTRRAVEPTWMTASNAHV-ERIGSELRCMVQAPPGYNIVGADVDSQELWIA 917

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            + I    +K    A           K+  T +  V+       R   KV+  A  Y  G 
Sbjct: 918  SIIGDAHYKRVHGATPFGWMTLIGTKSNGTDMHSVTAKAIGISRDHAKVINYARIYGAGQ 977

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
            K  + +       +       KS   F+  +  +  
Sbjct: 978  KFAQRLLKQFNPSMTDAEATSKSRKMFDLTKGKKVF 1013



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 11/137 (8%)

Query: 67  MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----------RTNGLPSSLKNACLAL 116
           + V HN  ++R   K+   ++    R++ T  L           R   +           
Sbjct: 359 IIVGHNVSYDRSRIKEQYWLNSTGTRFLDTMSLHVCVSGLNSYQRALLVSKKADMEKEIW 418

Query: 117 NFSEHLTKMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             +  L  + E   L           +   + T  +    + +   YC  DV AT  + +
Sbjct: 419 QSTTSLNSLIEVHKLYCGYEISKEGRNLFIEGTIKDIKDNFSMLMSYCASDVVATHNILR 478

Query: 176 RLIPLSDGERDLWLLDQ 192
           +L PL        +   
Sbjct: 479 KLFPLFQERFPHPVTLA 495


>gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
           CNPAF512]
          Length = 224

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           +  + ID ET + Q      V  A+ ++  +T                   A     P  
Sbjct: 29  LKTIAIDFETANEQRGSACSVGLAWIDEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 88

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +  + +       +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 89  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 146

Query: 101 RTNGLP---SSLKNACLALNFS 119
           +          L      L   
Sbjct: 147 QRIWPHFLSHRLNLIAEHLGLR 168


>gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii]
 gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii]
          Length = 401

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQYL 61
           + ID E         +G   +     + L   A +     + D          +   + +
Sbjct: 30  IAIDTE--------FMGEEHFI--PRLELIQVAAE-GVAAVIDFPAVQEAAPMARFWEIV 78

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107
            D  +  V H    +  LF    G     K +  T + A   G  +
Sbjct: 79  CDARIEKVLHAGRQDLELFAHHAGR--LPKPFFDTQIAAAMVGYGA 122


>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
 gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
          Length = 244

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 45/160 (28%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVH-YEGH-KIIEIG-AVEVVNRRLTGRHFHVYLRPDRLIDP 60

Query: 41  PVKLWDRTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDI 88
                                +  D + ++R      V HN+ F+        + LG DI
Sbjct: 61  EAYNVHGISDEFLADKPTYAEVADDFIDFIR--GAELVIHNASFDIGFMDYEFRLLGRDI 118

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     ++AR    G  ++L   C         
Sbjct: 119 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSK 158


>gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
 gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
          Length = 312

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 36/121 (29%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--------AMPS 55
           L +D ET           +   +   + + A+ +D E  +++  +E+          +P 
Sbjct: 55  LCLDTETTGLD-------YKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPIPE 107

Query: 56  DLLQ--------------------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           ++ +                     L +++ + +AHN+ F+R   +           W C
Sbjct: 108 EVKEITGISDDMVRGQAFDDPFINLLAEKSHLVIAHNAAFDRKFVEARFPAFTKL-PWAC 166

Query: 96  T 96
           T
Sbjct: 167 T 167


>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
 gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
          Length = 354

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 16/232 (6%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--Y 145
                 + T ++A   G    L      L       +   G AL     +    + P   
Sbjct: 111 CTPFPMVDTQLMAAFLG--HGLSTGFATL------VEEYLGVALDKSESRTDWMARPLTQ 162

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       L   Y K   + T   +   +   + +  +    +  N+    +D+  
Sbjct: 163 KQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAV-QQESDLLVSKRIRETNEENAYLDIKG 221

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDM 256
             +L+       K L     +       +    +     L +   G+     
Sbjct: 222 AWQLKPSELAVLKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTSFKK 273


>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
 gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
          Length = 325

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 16/232 (6%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--Y 145
                 + T ++A   G    L      L       +   G AL     +    + P   
Sbjct: 111 CTPFPMVDTQLMAAFLG--HGLSTGFATL------VEEYLGVALDKSESRTDWMARPLTQ 162

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       L   Y K   + T   +   +   + +  +    +  N+    +D+  
Sbjct: 163 KQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAV-QQESDLLVSKRIRETNEENAYLDIKG 221

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDM 256
             +L+       K L     +       +    +     L +   G+     
Sbjct: 222 AWQLKPSELAVLKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTSFKK 273


>gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 445

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 25/128 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVIT------------LCAYAWDDEPVKLWDRTE 49
             +  D+ET          V   A                      + +   +       
Sbjct: 7   KFIAFDVETTGLSEYADRIVEIGAICFEDRKPMRSFSTLVNPGVRISVEASRINHISNEM 66

Query: 50  QSAMP------SDLLQYLRDE---TVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
               P         +++L D      +  AHN+ F+    K     LG    +  ++ T 
Sbjct: 67  LGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYS-GTINYVDTL 125

Query: 98  VLARTNGL 105
            L+R    
Sbjct: 126 SLSRRLIS 133


>gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
 gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 39/150 (26%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSD 56
           M  +  +D ET    P          E AVI L      D  +             +PSD
Sbjct: 1   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-----RDGEIVDRYQSLMNAGRRIPSD 52

Query: 57  LLQY--LRDE--------------------TVMCVAHNSLFERILFKKTLG-IDIPS-KR 92
           ++    + +E                    +   VAHN+ F++  ++  LG + + +   
Sbjct: 53  VVALTGITNEMIATAPPVSKVMKEAAAFVGSHPVVAHNAGFDKRFWQAELGSLGVAADHP 112

Query: 93  WICTSVLARTN---GLPSSLKNACLALNFS 119
           + CT ++AR          L +    L   
Sbjct: 113 FACTMLVARRLYPHARSHRLSSLADLLRLP 142


>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
           laibachii Nc14]
          Length = 770

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 36/180 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           L ID+E              Y     +T     +  +    L D     +    L Q   
Sbjct: 244 LAIDLE-----------HHNYRSYLGLTCLMQISTHNHD-FLVDTLALRSSLQLLNQVFC 291

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
           D   + V H +  + +  ++ LG+ +       T   AR   LP  SL            
Sbjct: 292 DPQKLKVLHGADMDILWLQRDLGLYV--VNMFDTGRAARVLQLPRFSLAYLLK------- 342

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                         C        Y           +    Y + D      +++++    
Sbjct: 343 -------------KCCDIEADKQYQLADWRQRPLTEEMTRYAREDTRYLLFIYRKMKEEL 389


>gi|262342097|gb|ACY54559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSKFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|221053221|ref|XP_002257985.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
 gi|193807817|emb|CAQ38522.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 384

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 16/165 (9%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---MPSDLLQYLRDETVMCVAHNSLFERI 78
           +       ++L       + V L+D  +          L + L D  ++ + H+   +  
Sbjct: 85  YKIGRNGTVSLVQIC--AQDVYLFDVYKCDNTFLFIKCLKELLEDGRIVKITHDCREDCS 142

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALI--ARFC 136
           +      I +       T V A       + K+        +        K L+   +  
Sbjct: 143 ILFNQYSISLN--NIFDTQV-AYNLLSKETKKDLY------QISYDDLLYKCLLLHNKHK 193

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    D          +    Y  +DV   + L   L+   
Sbjct: 194 IYFHKMISLDQKIYLKRPIGKELIHYAIQDVIYLKPLMLNLVDRL 238


>gi|229472555|gb|ACQ72792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S G+ +V ADLAGIE R+L         +  + +G    +        
Sbjct: 7   PSDPRFRELFLPSPGQVMVGADLAGIEFRMLTHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +             +   +  +    + D    
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIRGAYIDAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
 gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
          Length = 406

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 51/203 (25%), Gaps = 30/203 (14%)

Query: 1   MSKLF--IDIE----TRSPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQS 51
           M  +    D+E    T        +      E      + L   A  D  V L D   Q 
Sbjct: 24  MKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTV-LIDPISQD 82

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111
                    + ++ ++ V H +  +       LG  I       T +     G       
Sbjct: 83  IDLKPFFDLMVNKKIVKVFHAARQDIETI-YHLGGVI-PSPLFDTQIAGSICGFG----- 135

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                               I + C G         T  +     +    Y   DV   R
Sbjct: 136 -------------DSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLR 182

Query: 172 ELFKRLIPLSDGERDLWLLDQTI 194
           +++  L    +  +    +D  I
Sbjct: 183 DVYLLLKKQLEKNKRTHWMDDEI 205


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 57  LLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSS 108
           L   L +  +  + VAHN+ F+R   +      G+       +CT  L+R          
Sbjct: 82  LAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPD-VLCTVKLSRALFPRESRHG 140

Query: 109 LKNACLALNF 118
           L         
Sbjct: 141 LDALIERYGL 150


>gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 208

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 36/145 (24%), Gaps = 25/145 (17%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYA----EQAVITLCAYAWDDEPVKLWD--------- 46
           M  +  ID ET    P         A        I     +  +    +           
Sbjct: 1   METIAVIDFETTGISPGQGARATEIAAVLVRGGQIVGRYQSLMNSGAWVPPFIEQLTGIS 60

Query: 47  ---RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSV 98
                        + + L        VAHN+ F+R  +     +    +  +  + CT +
Sbjct: 61  NRMLERAPPAERVMREVLDFTAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFACTLL 120

Query: 99  LARTN---GLPSSLKNACLALNFSE 120
           LAR          L          +
Sbjct: 121 LARRLYPEAPNHRLGTLAKLHALPD 145


>gi|328954574|ref|YP_004371908.1| Protein of unknown function DUF1998 [Desulfobacca acetoxidans DSM
           11109]
 gi|328454898|gb|AEB10727.1| Protein of unknown function DUF1998 [Desulfobacca acetoxidans DSM
           11109]
          Length = 977

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 50/187 (26%)

Query: 2   SKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAW------DDEPVKLWDRTEQSAMP 54
            ++  +DIET     L    V  ++  + + L + A       +   +            
Sbjct: 790 RRIAVLDIET----QLSAEEVGGWSRCSRMRL-SVAVLADLSQERYEIFY------EPQV 838

Query: 55  SDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWIC------TSVLARTNGLPS 107
            +L + L+ E  + V  N   F+  + +    ID+     +       T       G   
Sbjct: 839 DNLCRRLQ-EAELVVGFNLKRFDYRVLQPYTDIDLFGLPTLDIFEEMQT-----LLGHRL 892

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           SL +                      +    +         +       +    YC+RDV
Sbjct: 893 SLGHLAE-------------------KTLGAAKSGDGLLALKLFKEGRLEELVAYCRRDV 933

Query: 168 EATRELF 174
           E T  LF
Sbjct: 934 ELTARLF 940


>gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 36/147 (24%)

Query: 1   MSKLFIDIETR-----SPQPLPK-----------------VGVWAYAEQAVITLCAYAWD 38
           M+   ID ET          L K                    +       +   +    
Sbjct: 1   MNFTAIDFETAHAEFPCEIGLTKVENGIITKSQSWLIKPACFPYMNPWNQRVHGIS---- 56

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
                +   +    +  +L  ++ ++    VAHN+ F+  + +       + +P   + C
Sbjct: 57  --SADVSSASTFEELWGELKLWIEND--YLVAHNAAFDMRVLRSVLAYYDLAVPRTEYFC 112

Query: 96  TSVLA---RTNGLPSSLKNACLALNFS 119
           +  ++     +    SL       N S
Sbjct: 113 SVSISRKTWKHLPSHSLGVVSQFHNIS 139


>gi|312062860|gb|ADQ12722.1| DnaQ-like exonuclease domain-like protein [Acinetobacter phage
           phiAB1]
          Length = 286

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 76/269 (28%), Gaps = 33/269 (12%)

Query: 1   MSK--LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDE--PVKLWDRTEQSAMP 54
           M    + +D E    +     G  A        +    +A D+     + +    Q A  
Sbjct: 1   MKHNWIILDFE---VENYEYCGSLASPHCPENYVVAAGWACDNGLVKSEYYTEPNQWAAS 57

Query: 55  SDLLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTN--- 103
           +   + L +  V+ VAHN  FE            KK L       R  CT          
Sbjct: 58  TAFDEDLLNSKVL-VAHNLSFELHWLLATKFELIKKFLN---NGGRVFCTQYAEFLITHQ 113

Query: 104 -GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             +   L++  +            +              +   +     H          
Sbjct: 114 TEMYPKLEDCSVKYG-GTKKIDAVKLLWEQGYKTSEIDQALLMEYLADEHSGDVANTRRV 172

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
           C   V   +E+   +  ++    D  L +      G  +++D+  K  +   +   +L E
Sbjct: 173 CFAQVAYMQEVG--MYEMAKMRMDSLLFNAIATYNGLYVNMDVAKKNMDEQYKRIAELQE 230

Query: 223 DIVKLTDGIIR-----SSRQTYALRMYLF 246
           D+       +      S    Y +  +LF
Sbjct: 231 DVRSYLPKDLPAELEFSFTSGYHMSAFLF 259


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 40/146 (27%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDLLQ 59
            + +DIET    P         A+  +I + A  + +  V          +  +P  + Q
Sbjct: 6   FVAVDIETTGLNP---------ADSEIIEVAAVRFAEGRVLETFQSLVKPEKKIPLKIQQ 56

Query: 60  Y-----------------------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                                      ++++ + HN  F+    +    + I   R+  T
Sbjct: 57  LTGINESMVADAPACAEVTGMLAEFVHDSII-IGHNIGFDLNFLQHYHPVFIR-ARYYDT 114

Query: 97  SVLARTNGL---PSSLKNACLALNFS 119
             LAR          L N   AL   
Sbjct: 115 LPLARLVWPKAHGYRLANLVEALKIQ 140


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
 gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
          Length = 372

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 42/245 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 39  PQLGLIQL-FDGKQLSLIDPTELTDMTS-FVELLKDTSVLKVLHACGEDLEVFQNAFG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++                    
Sbjct: 95  CTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLGVELDKSE-------------------- 134

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------- 193
              T        Q   +Y   DV     L+++L+     E   W   Q            
Sbjct: 135 -SRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV-NEAGWWEAVQQESDLLVSKRIR 192

Query: 194 -INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGI 251
            +N+    +D+    +L+       K L     +       +    +     L +   G+
Sbjct: 193 NLNEETVYLDIKGAWQLRPAELAILKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGL 252

Query: 252 DLVDM 256
                
Sbjct: 253 TNFKK 257


>gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
 gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
          Length = 193

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRW 93
           +D+   +  D      + + + ++        VAHN+ F+    ++      +D+  +  
Sbjct: 44  FDNWMTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLDQPV 100

Query: 94  ICTSVLARTN--GLPSSLKNACLALNF 118
            CT   AR    G P+ L +    +  
Sbjct: 101 YCTMEGARRLWRGDPAKLDHCLAKIGL 127


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 494 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 552

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 553 FGLGVLSKKFGVS 565


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 34/149 (22%), Gaps = 40/149 (26%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVK---------------LWDRTEQ--- 50
           T     L   G    +  + IT   A       V                          
Sbjct: 26  TFVVFDLETTGTS--SADSEITEFGAVKVRGGEVVGEFQTLVRPAAGIPPYIQVLTGITT 83

Query: 51  ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSV 98
                      +  + L+++ D   + VAHN+ F+    ++     G   P    + T  
Sbjct: 84  AMVSAAPSIEQVLPNFLEFVGDA--VLVAHNARFDTAFVRRACERTGRPAPGNPVLDTVH 141

Query: 99  LARTNGLP-----SSLKNACLALNFSEHL 122
           LAR            L             
Sbjct: 142 LARQLLPRPEVPNHKLSTLAAYFRAETTP 170


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L    V     A++          + +    W        
Sbjct: 1   MNFVAMDFETANGKRYSACSLALTIVRDSKIADEFYTL-----INPQTDFFWRNVQIHGI 55

Query: 46  ---DRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
              D  +    P     ++       + +AHN+ F+  + K      GI  P+ + + T 
Sbjct: 56  HEEDVQDAPTFPEVWQHIKQFYRPEQLVIAHNNSFDNSVLKNTLLHYGIQPPTFQTLDTV 115

Query: 98  VLARTNGLP---SSLKNACLALNFS 119
             +R          L   C AL   
Sbjct: 116 KSSRRLIPGLDNYRLNTVCDALQID 140


>gi|121606814|ref|YP_984143.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595783|gb|ABM39222.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 530

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 85/299 (28%), Gaps = 47/299 (15%)

Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
           L   ++ E  ++ +       G RI+ + + + ++ I  E  K  +D     D  +    
Sbjct: 160 LQRQNEVEIPIFNILHKNITPGIRINQENLREHKKDIEYEYYKTLKDFSNKYDLPLEDPN 219

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
               +    +     D           +         A+ +I  R  S+         L 
Sbjct: 220 DQTVIDYLEY----RDFDFSGISVDYMLQFVPTPDGFAEAVINLRKISASRH------LL 269

Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
            A++   +    +     S T R        QN+ ++                       
Sbjct: 270 SALTLSKKYSTPVIDLFGSITSRIYFKDPVFQNISKRH---------------------- 307

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                   R  I  +    L   D    E  V+A ++ ++  +  ++  +          
Sbjct: 308 --------RDVICPNGSNLLSYVDYDQFEVGVMAALSEDEILLSLYSGEDLYESLLEQL- 358

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
                    K QR   K + L+  Y          A   G++  +  +  +  +TFE W
Sbjct: 359 ------FGEKNQRKFAKRLFLSYAYGMKLNRISDAAHAKGVERGKVKEFFRKLTTFEKW 411



 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 601 IVQAISRDILCEGMKNATK-NGYDIVLTVHDEIVSE--TPDTPYFSVGTLCSLMTK 653
           +VQ  +  I  + +    K +G+ I++ +HD ++ E      P   V     +MT 
Sbjct: 453 VVQGTASLIFKKALLALDKIDGFRILVPMHDAVLVEHSAHLDPALLVDVFSQVMTD 508


>gi|229472369|gb|ACQ72699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 36/144 (25%), Gaps = 8/144 (5%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            + D  R    AS    +V ADLAGIE R+LA          A  +             +
Sbjct: 7   PSDDQFRELFQASPSMVMVGADLAGIELRMLAHY-------LARYDEGRYADILLNGDIH 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                     R   K +  A  Y  G      +                   +  +    
Sbjct: 60  QENADKIGISRRQVKTVTYAFLYGAGDNKIGLSYDPQLSSKQATAKGEEIRAAYMDAVPG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGT 501
            E     ++ +         + G 
Sbjct: 120 LEKLVTAVKHKAQSSGKIRAIDGR 143


>gi|229472203|gb|ACQ72616.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLPSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16]
 gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16]
          Length = 386

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D TE   M    ++ L+D +V+ V H    +  +F+ + G  
Sbjct: 54  PQLGLIQL-FDGEQLSLIDPTELDEMTP-FVELLQDTSVLKVLHACGEDLEVFQNSFG-- 109

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T V+A   G   S   A      L      ++            +   D   
Sbjct: 110 CLPYPMVDTQVMAAFLGHGLSTGFASLVEHYLQVELDKSESRT-----DWLARPLTD--- 161

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                      + L   Y K     T   +       + +       +  +     +D+ 
Sbjct: 162 -KQLDYAAADVFYLLPLYEKLLNAVTEAGWWE-AAQQESDLLAAKRIKNTDPEMAYLDVK 219

Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGI 251
              +L+       K L     K       +    +     L +   G+
Sbjct: 220 GAWQLKPRELAILKPLATWRYKEAVRRDLALNFIFKENDLLNVARLGL 267


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 11/77 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-------DIPSKRWICTSVLARTNG 104
            +    ++++    V  VAHN+ F+        G+              + T  +A+   
Sbjct: 84  EIAQSFIEFIDGAEV--VAHNASFDISFMDHEFGLLQPKGPKTADICAILDTLAIAKFLH 141

Query: 105 LPS--SLKNACLALNFS 119
                +L   C      
Sbjct: 142 PGQKNNLDALCKRYGID 158


>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 30/147 (20%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWI----- 94
            +   D+ + + + +++  Y++      + HN+ F+          + +P  R       
Sbjct: 61  NEFVADKPKFAEIVNEIRDYVQ--GAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHI 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T   AR    G  +SL   C  L  S
Sbjct: 119 DTLREARQMFPGKRNSLDALCDRLGIS 145


>gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168]
 gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168]
          Length = 377

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 24/110 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T                   + L    +D E V L D     +  S L 
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGERVALID-PHGISDWSPLK 67

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
             LRD  +    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 68  AILRDTAITKYLHAGSEDLEVFLNAFG-EL-PQPLIDTQILAAFCGRPLS 115


>gi|229472545|gb|ACQ72787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDVHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 374

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 36/195 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSD 56
           ++ +D E     T                   + L    +D E + L D  T     P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113
               LRDE V    H    +  +F    G       +I T +LA   G P S        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNAFG--TLPVPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 114 LALNFSEHLTK---MEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRD 166
             +  +   ++       + L  + C  +        P         +A           
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAALDEC 183

Query: 167 VEATRELFKRLIPLS 181
           +   +     L P  
Sbjct: 184 LLLCQRKQDILAPAL 198


>gi|157325092|ref|YP_001468517.1| gp137 [Listeria phage A511]
 gi|66733100|gb|AAY52918.1| gp137 [Listeria phage A511]
          Length = 278

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 17/79 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------AMP 54
           +  D+ET +  P   +G           + + +W +          +           + 
Sbjct: 208 IAWDLETNTLLP-EMLGAKP-------LVMSVSWKEGQGVTIPLEHRESHWEDHELEEIY 259

Query: 55  SDLLQYLRDETVMCVAHNS 73
           + + +++ D+ ++ V HN 
Sbjct: 260 NYIKEFVADKNIIKVGHNI 278


>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
 gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
          Length = 372

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 16/232 (6%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--Y 145
                 + T ++A   G    L      L       +   G AL     +    + P   
Sbjct: 111 CTPFPMVDTQLMAAFLG--HGLSTGFATL------VEEYLGVALDKSESRTDWMARPLTQ 162

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       L   Y K   + T   +   +   + +  +    +  N+    +D+  
Sbjct: 163 KQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAV-QQESDLLVSKRIRETNEENAYLDIKG 221

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDM 256
             +L+       K L     +       +    +     L +   G+     
Sbjct: 222 AWQLKPSELAVLKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTSFKK 273


>gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
 gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 45/161 (27%), Gaps = 49/161 (30%)

Query: 1   MSK---LFIDIET---RSPQP---------------LPKVGVWAYA--------EQAVIT 31
           M     + +D ET      +                L    +  Y         E A + 
Sbjct: 1   MKHLRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPERDIPEEAAKVH 60

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLG- 85
                         D+ E     +++ Q + D       V HN+ F+        +  G 
Sbjct: 61  GITL----------DQLEGKPKFAEIGQQIADFIAGTELVIHNAPFDVGFLNAEFRRAGL 110

Query: 86  --IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
             ++  +   + T V+AR    G  +SL   C  L      
Sbjct: 111 PSVEELTANVVDTLVMARAMYPGQKNSLDALCTRLEVDRSK 151


>gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
 gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
          Length = 207

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 37/146 (25%), Gaps = 35/146 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVKL 44
             + ID ET + +      V  A+ E   +                    A     P  +
Sbjct: 8   KIIAIDFETANEERGSACSVGLAFVENGQVVRVEERLIRPKTMRFSSFNIAIHGIRPDHV 67

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
            D  E   +  +          M VAHN+ F+  +++ +  +            L+    
Sbjct: 68  EDAGEFPEVMDEFADDF--SGAMVVAHNAAFDLSVWRASCDLYRQPYP-----SLSYVCS 120

Query: 105 -----------LPSSLKNACLALNFS 119
                          L      L  S
Sbjct: 121 VKLAQKVWPQLPSHRLNVLAAHLQLS 146


>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
          Length = 949

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 38/161 (23%), Gaps = 22/161 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
               +D E  S +                 L   +       L D      + S L    
Sbjct: 165 KAFAVDTEQHSLRSFL----------GYTALMQISTQKAD-YLIDTIALHDVMSILRPVF 213

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + ++  + H +  + +  ++     I       T+        P   K+    L     
Sbjct: 214 ANPSICKIFHGADNDVLWLQR--DFHIYVVNMFDTAKACEVLSKPQ--KSLAYLL----- 264

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             ++  G        +      P       + +    +  Y
Sbjct: 265 --ELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLY 303


>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
          Length = 949

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 38/161 (23%), Gaps = 22/161 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
               +D E  S +                 L   +       L D      + S L    
Sbjct: 165 KAFAVDTEQHSLRSFL----------GYTALMQISTQKAD-YLIDTIALHDVMSILRPVF 213

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            + ++  + H +  + +  ++     I       T+        P   K+    L     
Sbjct: 214 ANPSICKIFHGADNDVLWLQR--DFHIYVVNMFDTAKACEVLSKPQ--KSLAYLL----- 264

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
             ++  G        +      P       + +    +  Y
Sbjct: 265 --ELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLY 303


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 38/151 (25%), Gaps = 39/151 (25%)

Query: 2   SKLFIDIETR----SPQPLPKVGVWAYAEQAVIT---------------------LCAYA 36
             + ID+ET     S             E   I                        +  
Sbjct: 3   RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIPPFITNLTGIS-- 60

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRW 93
             D+ V       + A+   +   L D  +  +AHN  F+        K  GID    + 
Sbjct: 61  --DDDVADAPLFTEKAL--SIKSILEDSYI--IAHNVNFDLGFLNAELKENGIDRLHNQV 114

Query: 94  ICTSVLARTN---GLPSSLKNACLALNFSEH 121
           + T  L+R          L       N    
Sbjct: 115 LDTVELSRILFPTAPGYKLSQLSDHFNLQHD 145


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 65  TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
             + VAHN+ F+R   +   + +GI       +CT  L+R          L       + 
Sbjct: 92  GKLFVAHNASFDRGFLRGEFRRVGISFDPD-VLCTVRLSRALFPSEKRHGLDALVERHSL 150


>gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 244

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M +L +D ET               E   + L                       A A  
Sbjct: 1   MRQLILDTETTGLN---ARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR---- 92
               +   D+ +   +      +++      + HN+ F+          + +P       
Sbjct: 58  GLTTEFLSDKPKFGEIADQFRDFIQGAD--LIIHNAPFDIGFLDVEFALLGLPPVSTYCG 115

Query: 93  -WICTSVLARTN--GLPSSLKNACLALNFS 119
             I T   A+    G  +SL   C     S
Sbjct: 116 EIIDTLARAKQMFPGKRNSLDALCDRFGIS 145


>gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
 gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
          Length = 297

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 33/118 (27%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAW----DDEPVKLWDRTEQSAMPS 55
           L ID ET    PL    +        +     L   ++    D    +       + +P+
Sbjct: 69  LIIDTETSGLDPLQDQCLELGCILFDVPSRSVLAQQSFLLPVDSNAAEAI-----NRIPA 123

Query: 56  DL-------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTS 97
            +              ++L D   + VAHN+ F+R  F    G+ +       W+CT 
Sbjct: 124 AVTRRPQPWREALVWFEHLLDAADLLVAHNAAFDRQWF----GLGVVPATATPWLCTM 177


>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 234

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDE--------PVK 43
           M ++ +D ET     L         E   + L           +  + E         V 
Sbjct: 1   MRQIVLDTETTG---LSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPERDSHEDALKVH 57

Query: 44  LW------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GIDIPSK 91
                   D+ + +A+  +LL+YL+   +  + HN+ F+     K L       I     
Sbjct: 58  GISNEFLKDKPKFAAVADELLEYLQGAEI--IIHNAPFDVSFLNKELELIGRDPIRHCVA 115

Query: 92  RWICTSVLARTN--GLPSSLKNACLALNFS 119
           +   + ++A+    G  +SL   C  L+  
Sbjct: 116 KVTDSLMMAKELFPGKRNSLDALCDRLDVD 145


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 7/60 (11%)

Query: 65  TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
             + VAHN+ F+R   +   +  GI       +CT  L+R          L       + 
Sbjct: 131 GKLFVAHNASFDRGFLRGEFRRAGISFDPD-VLCTVRLSRALFPSEKRHGLDALVERHSL 189


>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
 gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
          Length = 261

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 59/243 (24%), Gaps = 56/243 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----------KLWDRTEQ 50
             + +D ET         GV  Y     +   A    D+ V             W   ++
Sbjct: 4   KYVVLDFETT--------GVNRYHND-EVVQVAIVNQDDEVLINELCKPKHHFSWPSAQR 54

Query: 51  ---------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
                           +    +++   +   + V +N  FE+ + K   GIDI    +  
Sbjct: 55  INGISPLMVKDKLCFESYIDRIIEIFDNSEFI-VCYNIAFEQGMLKNY-GIDISKYVFKD 112

Query: 96  TS-VLARTNGLPS--------SLKNACLALNFS---EHLTKMEEGK----ALIA-RFCKG 138
                A   G           SL        ++       +  +        I       
Sbjct: 113 PMKDFAYIYGERGYHGGYKWQSLSTCAKYFGYNFAAHDALEDVKATRYCFEQIEAYKNGK 172

Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
              S   +          +   +Y + D      ++     +    ++      +I    
Sbjct: 173 IEKSYLNNWKLLFEPLVIKQGKKYYEDD--LVDVIYYGDKQIVASVKEDITHMISIEFNK 230

Query: 199 YRI 201
             I
Sbjct: 231 SSI 233


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 53/182 (29%), Gaps = 49/182 (26%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPV--KLWDRTEQSA---------- 52
           +DIET             Y E+  IT  A Y +D + V  +                   
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLT 54

Query: 53  ---------------MPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                          +   +++   D   + VAHN+ F+  + +   + LG +   K   
Sbjct: 55  GINNDMLKNAPKFYEVAKRIVEITED--CILVAHNAKFDYRILRTEFRRLGFEYERKSL- 111

Query: 95  CTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTR 149
           CT  L++         SL     +L           G A   I  F          D  +
Sbjct: 112 CTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQATIKLFKMLLAKDVEKDIMK 171

Query: 150 AN 151
            +
Sbjct: 172 EH 173


>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
 gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
          Length = 404

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 64/266 (24%), Gaps = 36/266 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +   +       + L   A       +         P      + 
Sbjct: 47  YVTVDTE------FMRQTTYR----PKLCLIQMAAPGIEAVVDPLPNLDLSP--FYALMA 94

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +  V+ V H +  +  +  +  G  +       T + A   G                  
Sbjct: 95  NTAVVKVFHAARQDIEIVWQEAG--VIPMPLFDTQIAAMALGHG------------DAIS 140

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                 K L     K       Y               EY   DV   R+++ +L    +
Sbjct: 141 YGALVKKLLKKNHDKT------YQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLE 194

Query: 183 ----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                      +    + + Y  D     K  +L  + R      +         +  + 
Sbjct: 195 QTGREPWLEEEVAVLTDPKTYAFDPADAWKRLKLGGKSRTARSIIMELAAWRERAAQDEN 254

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSI 264
                 L      ++   +  TL+++
Sbjct: 255 VPRGRVLKDEAIYEVAKHAPRTLETL 280


>gi|229472397|gb|ACQ72713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEVRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|195437266|ref|XP_002066562.1| GK24497 [Drosophila willistoni]
 gi|194162647|gb|EDW77548.1| GK24497 [Drosophila willistoni]
          Length = 3982

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 16/227 (7%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N  Q W+          +    ++  L  L     +      T   +   
Sbjct: 3221 NTSGLASSAQNLEQRWKNVCSQSAERKQRILTIWNLLQQLIKLTAEHKNWLGTQETQLAG 3280

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     ++ I + +K+L   + +L    + + RQ       L +  G++  ++ + T
Sbjct: 3281 FERDQKSSNKQKIEERQKELKAKLEELDSQAV-NLRQLEHTYAKLTMSAGVEPENIQKLT 3339

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K +I            + + L +A+  D ++    Q   A  T   
Sbjct: 3340 L-----------PTKVMISKWRQL----TPRCHALLDAIDKDAKILREFQTAQAEATQSL 3384

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +      + LP  E  +   +     L R +++   L  A   V+  
Sbjct: 3385 NAIQKALEQLPTVEDQKNSKSDPKAVLQRLDSLERKLQEAQQHVQQA 3431


>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
 gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 15/114 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
           +L +D+E  S +            Q    L   +       + D    ++ +   L +  
Sbjct: 21  ELAVDLEHHSHRSF----------QGFTCLMQISTRTTD-YVVDTLALRNQLGPALARVF 69

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL 114
            D  V+ V H +  +    ++     +       T   AR  GLPS  L     
Sbjct: 70  ADPRVVKVFHGADSDVDWLQR--DFSLFLVNMFDTGQAARVLGLPSFGLAYLLE 121


>gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1]
          Length = 176

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 22/137 (16%)

Query: 3   KLFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL---------WDRTEQSA 52
            +  D+ET                +   I    ++  D               D  +   
Sbjct: 4   YIVFDVETPNHANDRMSAIGITAVKDNKIVANYFSLVDPETHFDSFNTQLTGIDAEKVKD 63

Query: 53  MP--SDLLQYLR---DETVMCVAHNSLFERILFK---KTLGIDIPSKR-WICT-SVLART 102
            P  ++L + +     + ++ VAHN++F+  + +   ++ GI       ++CT  +  R 
Sbjct: 64  APNFAELWKKIEPIMSKGIL-VAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQIGRRV 122

Query: 103 N-GLPSSLKNACLALNF 118
              +  +L   C     
Sbjct: 123 LPNMKHNLNVMCDHYGI 139


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 42/164 (25%), Gaps = 49/164 (29%)

Query: 1   MSKLF-------IDIETRSPQPLPKVGVWAYAEQ--AVITLC------------------ 33
           M+ +        +D ET     + +     Y       I                     
Sbjct: 1   MNIISNASRQVILDTETTG---MNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP 57

Query: 34  AYAWDDEPVKLWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL- 84
             A D E + +   T++          +  D + ++    +  VAHN+ F+         
Sbjct: 58  GQAIDPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEI--VAHNANFDVSFMDHEFS 115

Query: 85  ------GIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSE 120
                        + + T V+A+        +L   C       
Sbjct: 116 LLQPRGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDT 159


>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 30/147 (20%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWI----- 94
            +   D+ + + + +++  Y++      + HN+ F+          + +P  R       
Sbjct: 61  NEFVADKPKFAEIVNEIRDYVQ--GAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHI 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T   AR    G  +SL   C  L  S
Sbjct: 119 DTLREARQMFPGKRNSLDALCDRLGIS 145


>gi|222480195|ref|YP_002566432.1| hypothetical protein Hlac_1783 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453097|gb|ACM57362.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 254

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 28/183 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
             F DIET         G+  + +   +T  ++  D E   L     +      L +   
Sbjct: 88  TCFFDIETT--------GLDEHRD--RVTTVSFHRDGETTTLV--AGEDLTAERLREQFA 135

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE-- 120
           D +++   + + F+    +    I+I       T            L   C  +  S   
Sbjct: 136 DASLLATFNGARFDVPFLETAFDIEI------DT--------PHLDLMYPCKRIGLSGGL 181

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              + E G         G      +         A      Y + D +  R L   +   
Sbjct: 182 KPIEKEIGIERDRPDLSGRDAVRLWREYERGDDDALDTLVSYNREDTKNLRTLADTVTET 241

Query: 181 SDG 183
              
Sbjct: 242 LHE 244


>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 791

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            + S++ + L D   + VAHN+ F+  L +K+    G++      + T  LAR       
Sbjct: 71  EVASEVRKLLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 128

Query: 107 -SSLKNACLALNFSEHL 122
              L+     L+ +   
Sbjct: 129 KYGLEALSEKLDLAHDH 145


>gi|323699329|ref|ZP_08111241.1| Protein of unknown function DUF1998 [Desulfovibrio sp. ND132]
 gi|323459261|gb|EGB15126.1| Protein of unknown function DUF1998 [Desulfovibrio desulfuricans
           ND132]
          Length = 1005

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 35/175 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYA--WDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           +DIETR      +VG W  A++      + A  WD     ++D  +       L+ +LR 
Sbjct: 835 LDIETRYSAD--EVGGWNRADR---MGVSIACLWDSGEEAMFDYEQDDM--DALVAHLR- 886

Query: 64  ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL---ALNFS 119
           +  + +  N   F+  +        +    +           LP +L         L + 
Sbjct: 887 KFDLVIGFNHVKFDYAVL-----GGLHPFGFR---------SLP-NLDLLVEVNNRLGYR 931

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                  +   + +        +      +        L  EYC++DV  TR+++
Sbjct: 932 ------VKLDNIASATLGAGKSADGLQALKWWKEGRLDLITEYCRQDVTVTRDVY 980


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 49/142 (34%), Gaps = 29/142 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRT------ 48
            +  DIET    P    + ++G      +  I    +   + E   P K+ + T      
Sbjct: 117 YVVFDIETTGFDPFNDKIIEIGAVKMRGR-EIIGEFSEFVNPEIPIPPKITELTTITDEM 175

Query: 49  -----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
                +   +    L++  D TV  VAHN+ F+    K+     G++      I T  LA
Sbjct: 176 VANAEKIETVLPRFLEFCTDTTV--VAHNAKFDVGFIKQKTIEQGLEYSP-SVIDTLPLA 232

Query: 101 RTNGL---PSSLKNACLALNFS 119
           RT         L N       +
Sbjct: 233 RTLLPDSRGYGLANLVKYFGIT 254


>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 243

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 37/150 (24%), Gaps = 39/150 (26%)

Query: 1   MSKLFIDIETRSPQPL---------------PKVGVWAY--------AEQAV---ITLCA 34
           M ++ +D ET    P                 ++    Y        +       +    
Sbjct: 1   MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNPGRSSDPEALRVHGIR 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
              DD      D  +   +  D L +L D     + HN+ F+       L   G      
Sbjct: 61  ---DDFLADQPDFAD---IVEDFLAFLGDAE--LIIHNAPFDLAFLNAELERVGRPALQN 112

Query: 92  RWICTSVLARTNGLPSS--LKNACLALNFS 119
               T V AR         L   C      
Sbjct: 113 PVRDTLVEARRRHPGQKNDLDALCRRYGVD 142


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
          Length = 1347

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 41/152 (26%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           S +  D ET         L ++G   Y E   I       ++E            +P  +
Sbjct: 320 SFVVFDTETTGLDSNVEALTEIGA-VYVENGKI-------NEEKKFCTFVNPGKPIPQKV 371

Query: 58  LQY--LRDE--------------------TVMCVAHNS-LFERILFKKT---LGIDIPSK 91
           ++   + D                       + VAHN+  F+ +  +K     GI     
Sbjct: 372 VELTGINDAMVADAPTPEEAIRAFKEFCGDHVLVAHNAHSFDMLFIRKAGEKAGISFDEN 431

Query: 92  RWICTSVLARTNGLP---SSLKNACLALNFSE 120
            +I T  + +          L      L    
Sbjct: 432 TYIDTLPMGQALFPGLRNYKLDTINKHLEIPP 463


>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
 gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 244

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 36/150 (24%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M +L +D ET               E   + L                       A A  
Sbjct: 1   MRQLILDTETTGLN---ARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR---- 92
               +   D+ +   +      +++      + HN+ F+          + +P       
Sbjct: 58  GLTTEFLSDKPKFGEIADQFRDFIQGAD--LIIHNAPFDIGFLDVEFALLGLPPVSTYCG 115

Query: 93  -WICTSVLARTN--GLPSSLKNACLALNFS 119
             I T   A+    G  +SL   C     S
Sbjct: 116 EIIDTLARAKQMFPGKRNSLDALCDRFGIS 145


>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
 gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
          Length = 228

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 42/153 (27%)

Query: 1   MSK-LFIDIETRS-PQPLPKVGVWAYAEQAVITLCAYAWDD---EPVKLWDRTEQSAMPS 55
           M + +  D ET      +         E A + L     DD             +  +P+
Sbjct: 1   MKRSILFDTETTGFDPDMG----DRIIEIAALELI----DDLPTGEAYHVLIHPERDIPA 52

Query: 56  DL-------LQYLRDETV---------------MCVAHNSLFERIL----FKKTLGIDIP 89
           +        ++ L  + +                 +AHN+ F+        K      + 
Sbjct: 53  EATKVHGFRIEDLEGKPIFSEVADGFLEFIGDSPMIAHNARFDFKFVNAELKACGREPLD 112

Query: 90  SK-RWICTSVLAR--TNGLPSSLKNACLALNFS 119
              R I T  +AR    GLP+SL   C      
Sbjct: 113 YASRAIDTVEMARKKYPGLPASLDALCRRFGID 145


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARY-GIPEATNPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 42/156 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLC------------------AYAWDDEP 41
            ++ +D ET     + +     Y       I                       A D E 
Sbjct: 9   RQVILDTETTG---MNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINPGQAIDPEA 65

Query: 42  VKLWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GI 86
           + +   T++          +  D + ++    +  VAHN+ F+                 
Sbjct: 66  IAVHGITDERVSKEPRFHQVAQDFINFIDGAEI--VAHNANFDVSFMDHEFSLLQPRGPK 123

Query: 87  DIPSKRWICTSVLARTNGLPS--SLKNACLALNFSE 120
                + + T V+A+        +L   C       
Sbjct: 124 TADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDT 159


>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
 gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
 gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
 gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
           HB8]
          Length = 247

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGLP- 106
             +       L D     V HN+ F+    +     LG  +     + +  LAR  GLP 
Sbjct: 138 EEVLEKAYPLLADA--TLVIHNAAFDLGFLRPALEGLGYRLE-NPVVDSLRLARR-GLPG 193

Query: 107 ---SSLKNACLALNFS 119
                L      L   
Sbjct: 194 LRRYGLDALSEVLELP 209


>gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003]
          Length = 384

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 60/279 (21%), Gaps = 58/279 (20%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQSAMPS 55
            + +D E     T                   + L   A         L D   +     
Sbjct: 22  YVTVDTEFLRERTYWS---------------KLCLVQMALPGKEGEAVLVDPLVEGLSLE 66

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L    R +  + V H +  +  +F    G  +       T V A   G           
Sbjct: 67  PLYDLFRHQATVKVFHAARQDLEIFFTEAG--VFPLPLFDTQVAAMVCGFG--------- 115

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
               +   +    K       K S  +        +          Y   DV   R +++
Sbjct: 116 ---EQVGYETLVKKIAKQSLDKTSRFTDWSRRPLTDAQ------KAYALADVTHLRVIYE 166

Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225
            L              + E  L   +  I       +               ++L     
Sbjct: 167 FLSKELRKSGREKWVEEEEAILLNPETYITRPEDAWERVKTRTNSGRFMAVVREL-ARFR 225

Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
           +         R        L     ++L      +L  +
Sbjct: 226 ETFAQGRNIPRSRVFKDDAL-----LELASTKPVSLDEL 259


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARY-GIPEATNPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|294950345|ref|XP_002786583.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900875|gb|EER18379.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 387

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             +     A +     ++D   +  +   L   L D +V+ V H+   +        GI 
Sbjct: 55  GQLCTIQIATERGDAFMFD-ACRPGVVQSLAPLLSDPSVLKVFHDCREDSSALYHQHGIS 113

Query: 88  IPSKRWIC---TSV 98
           +          T +
Sbjct: 114 LD--CVFDTQATML 125


>gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c]
 gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c]
          Length = 362

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 42/174 (24%), Gaps = 22/174 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A +DE + +        M   L  +L    V+ + H++  + I FK   G  
Sbjct: 36  PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 91

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +  +    T +                    +        G   +               
Sbjct: 92  VLPRPLFDTQIG------------------AALTGLGGGMGYQKLVATVTNVALEKGETR 133

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
           +   H        +Y   DV     L   L            L++        I
Sbjct: 134 SDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNI 187


>gi|328754581|gb|EGF68197.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA2]
          Length = 412

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
 gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
          Length = 177

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LC---AYAWDDEPVKLWDRTEQS 51
           M+ + +D ET S +    V +  A      +      L    ++ +D    ++   TE  
Sbjct: 1   MNFIAMDFETASAKRYSAVSLGLAVVRDNKLVDEFYTLIKPDSF-FDKRNTRIHGITEAD 59

Query: 52  ----AMPSDLLQYLRD---ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR 101
                +  ++ + ++       + +AHN+ F+  + ++      ID+P    + T   +R
Sbjct: 60  VRNAPIFPEVWEQIQQFYTPNQLVIAHNAPFDNGVLRETLTHYDIDLPHYLSLDTVRTSR 119

Query: 102 TN---GLPSSLKNACLALNFS 119
                     L     AL   
Sbjct: 120 KLYPELPNHKLNTVAAALGID 140


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 35/147 (23%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVIT---------LCAYAWDDEPVKLWDRT 48
             + +DIET    P    + +VG+    E   IT           + +   E +      
Sbjct: 4   RYVALDIETTGLNPAVDRIIEVGMAR-VEDGQITQKYSTLVYPGISVS---ERITELTGI 59

Query: 49  EQSAMPSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
               +       + D              + HN +F+    KK     G+ I       T
Sbjct: 60  HNEELTG--KPRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTINDDGI-DT 116

Query: 97  SVLARTNGL---PSSLKNACLALNFSE 120
             LAR         SL   C   N   
Sbjct: 117 LKLARRILPEVEHKSLSFLCQYFNIDP 143


>gi|195472753|ref|XP_002088664.1| GE11355 [Drosophila yakuba]
 gi|194174765|gb|EDW88376.1| GE11355 [Drosophila yakuba]
          Length = 3968

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 16/227 (7%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 3209 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 3268

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     ++ + + +K+L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 3269 FERDQKSNSKQKLEERQKELRAKLEELESQSV-NLRQLEQIYAKLTMSAGVEPENIQKLT 3327

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K ++            + + L +A+  D +L           T   
Sbjct: 3328 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 3372

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +      + LP  E  +    Q    L R E++   L  A   V+  
Sbjct: 3373 NAIQKALEQLPSVEDQQTSKAQPKAVLQRLESLEKKLQDAQQHVQQA 3419


>gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 186

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LCA-----YAWDDEPVKLW---D 46
           M  L ID ET + +      V  A+ E   +      L       ++  +  V      D
Sbjct: 1   MRTLAIDFETANERRDSACAVGLAWIEDGRVVRREARLIRPPDLRFSPFNIRVHGIRPED 60

Query: 47  RTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
             +       +  +L      + +AHN+ F+  +    L   G+  P    +CT  LAR 
Sbjct: 61  VADAKPFGEAMAPFLPEIAGALVLAHNASFDVGVLCAALAACGLPRPRFTSLCTVQLARR 120

Query: 103 N---GLPSSLKNACLALNFS 119
                    L      L   
Sbjct: 121 QWPGEARYRLPILAERLGIP 140


>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
 gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
          Length = 400

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 32/193 (16%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +    ++       + L    +D + + L D  E S   + L   L D
Sbjct: 35  IAVDTE-----FVRTRTLY-----PQLGLIQI-YDGQQIALIDPLEISDFTA-LKAILTD 82

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           E ++ V H+   +   F     +DI  +    +   A   G+  SL              
Sbjct: 83  ENIVKVLHSCSEDIETFI--CALDIVPRPIFDSQFAAAITGMGPSL-------------- 126

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
               G A +               T            +Y   DV    +L+  L   +  
Sbjct: 127 ----GYAKLVEVMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLA 182

Query: 184 ERDLWLLDQTIND 196
           +     +   + +
Sbjct: 183 QGRQAWVFAEMEN 195


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           D  PV +   T            + ++    L  +  + VAHN++F+  +  +       
Sbjct: 64  DPGPVWIHGLTTDVLAGAPLFPEIAAEFAARL--DGRVLVAHNAMFDWQMIAREYARAES 121

Query: 90  SKRWI---CTSVLARTNGLP---SSLKNACLALNF 118
           +       CT  LA+   LP     L++       
Sbjct: 122 AAPVRQRLCTIALAKELSLPLPNHKLESLAAHFGV 156


>gi|313812910|gb|EFS50624.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA1]
          Length = 412

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 59/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L  +   E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEVGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
 gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
          Length = 340

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLR 62
           +  D E      L + G         I   A+    + V L D       +       L 
Sbjct: 54  IGFDCE---GVDLCRNGALC------IMQLAF---PDAVYLVDAIEGGKELIQACKPALE 101

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
            + +  V H+   +        GI +     + T +     
Sbjct: 102 SDHITKVIHDCKRDSEALYFQFGIKLH--NVMDTQIAYSLI 140


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 51/210 (24%), Gaps = 41/210 (19%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------------LWDRT----- 48
           T     +   G+ A     +I L A       +                   D T     
Sbjct: 413 TFVVFDVETTGLSA-VYDTIIELAAVKIKGGEIVDRFESFANPHHALSQTTIDLTGITDD 471

Query: 49  ---EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
              +   +   L  +       + VAHN+ F+     +       +  S   + T  LAR
Sbjct: 472 MVNDAPEVADVLKDFHTWMGNDILVAHNASFDMGFLNQGFQRIDYEKASNPVVDTLELAR 531

Query: 102 TNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
                     L   C  L      +          G  L     +             NH
Sbjct: 532 FLLPELRNHRLNTLCKHLDIELTQHHRAIYDAEATGYLLWKLVQRLVEKEISNHLELNNH 591

Query: 153 V---QAWQLFGEYCKRDVEATRELFKRLIP 179
           +    A+Q    Y    +  T E  K L  
Sbjct: 592 MGENNAYQRSRPYHCTLIAQTEEGLKNLYK 621


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 37/197 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE--------------PVKL 44
            + +D+ET    P    + ++G         + + A   +                   L
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAML 91

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                   +    L+++ D   + VAHN+ ++    K      G   P+ R + T+ LAR
Sbjct: 92  LPAPPIEQVLPSFLEFVSDA--VLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAALAR 149

Query: 102 TNG-----LPSSLKNACLALN---------FSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                       L                   +    ++    LI R     + +     
Sbjct: 150 RVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGTVGEAI 209

Query: 148 TRANHVQAWQLFGEYCK 164
             A  V   Q    +  
Sbjct: 210 EFARAVTPTQRRKRHLA 226


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 11/148 (7%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS 107
             +  D L +L D   + VAHN  F+R + +  L   G+  P    +CT  LAR      
Sbjct: 73  DEVLPDFLDFLGDG--VLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLLPGL 130

Query: 108 ---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE--Y 162
               L                  G A         +          + ++A   F +  Y
Sbjct: 131 PAKGLDGLIRFYQIPVENRHRALGDAEATAHVLLRLLEEARRQYGIDTLEALLTFQQQRY 190

Query: 163 CKRDVEATR-ELFKRLIPLSDGERDLWL 189
            +    +    L + L+P       ++L
Sbjct: 191 PQYKNASPLVRLRETLLPRLPEAPGVYL 218


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 44/145 (30%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAY----AWDDEPVKLWDRTEQSAMPSDLL--- 58
           +D+ET              A    I   A     A  D     +        P  +    
Sbjct: 22  VDVETTGL-----------ARDDRIVSAAVYRLDALGDVEDHWYTLVNPERDPGPVWIHG 70

Query: 59  ---QYLR----------------DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
              + L                 D  V+ VAHN+ F+  +  +      I  P ++ +CT
Sbjct: 71  LTSEALEGAPLFPEVAAQLSERLDGRVL-VAHNAAFDWSMLAREYARAAITAPVRQRLCT 129

Query: 97  SVLARTNGLP---SSLKNACLALNF 118
             L++   LP     L++       
Sbjct: 130 IALSKELRLPLPNHKLESLAAHFGV 154


>gi|262342249|gb|ACY54635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + +G    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDDGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 1683

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYA---EQAVI---TLCAYAWDDEPVKLWDRT------- 48
           S + +D ET S        +   A   E   I        + +  P ++ + T       
Sbjct: 8   SYVILDTETTSVDRAEARLLEVAAVRVEDGRICDTLQLLVSGERIPREVAELTGIRQEEL 67

Query: 49  --EQSAMPSDLLQYLR-DETVMCVAHNSL-FERILFKKTLG---IDIPSKRWICT 96
             +   +P  L Q L     +  V HN+  F+  L K+      +         T
Sbjct: 68  DRDGQPLPDVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDT 122


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           D  PV +   T            +  +    L D   + VAHN++F+  +  +       
Sbjct: 74  DPGPVWIHGLTSDMLQDAPLFKDIAGEFAGRLAD--RVLVAHNAIFDWQMIAREYARAEE 131

Query: 90  SKRWI---CTSVLARTNGLP---SSLKNACLALNF 118
           +       CT  L++   LP     L++       
Sbjct: 132 TAPVRQRLCTIALSKELNLPLPNHKLESLAAHFGV 166


>gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54]
 gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54]
          Length = 374

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  DE     D      + S L + L D   + + H++  + I+  +  G  
Sbjct: 40  PQLGLIQIALSDEECYAIDPLSIKDL-SPLGELLADRNTIKILHDAPQDLIIMSQATGAT 98

Query: 88  IPSKRWICTSVLA 100
              +    T + A
Sbjct: 99  --PQNIFDTRLAA 109


>gi|120597845|ref|YP_962419.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
 gi|120557938|gb|ABM23865.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
          Length = 301

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 39/187 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +  D ETR+             +   ++L   A  D    L+     +     L   L
Sbjct: 114 RVIGFDTETRASF-------ERGVQHP-LSLIQIATHD-TCYLFQHALLAEQLGLLKPVL 164

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE ++ V      +     +  GI++                           L+ +  
Sbjct: 165 EDENILKVGVGLRSDGQALTREWGINVTP------------------------RLDLNWV 200

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE------YCKRDVEATRELFK 175
           L ++  GK +  R    ++     D  +   +  WQ          Y   D  A +  F 
Sbjct: 201 LAQLGAGKEMGTRQLVATLLQKRIDKPKKVTLSNWQQVPLTSTQIVYAALDALAAQHCFS 260

Query: 176 RLIPLSD 182
            LI    
Sbjct: 261 ELIDKLK 267


>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
          Length = 791

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            + S++ + L D   + VAHN+ F+  L +K+    G++      + T  LAR       
Sbjct: 71  EVASEVRKLLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 128

Query: 107 -SSLKNACLALNFSEHL 122
              L+     L+ +   
Sbjct: 129 KYGLEALSEKLDLAHDH 145


>gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506]
 gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506]
          Length = 385

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           E   + D        +     + DE V+ V H    +  +     GI         T V 
Sbjct: 48  EEAIVVDAVADGIDLAPFFALMSDEKVLKVFHAGRQDIEIVWHLAGII--PHPVFDTQVA 105

Query: 100 ARTNGLPSS 108
           A   G   S
Sbjct: 106 AMVLGHGDS 114


>gi|289425030|ref|ZP_06426807.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|289154008|gb|EFD02696.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|313792108|gb|EFS40209.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA1]
 gi|313838766|gb|EFS76480.1| 3'-5' exonuclease [Propionibacterium acnes HL086PA1]
 gi|314962767|gb|EFT06867.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA1]
 gi|315077982|gb|EFT50033.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA2]
 gi|327453174|gb|EGE99828.1| 3'-5' exonuclease [Propionibacterium acnes HL092PA1]
          Length = 412

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|50842545|ref|YP_055772.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|295130624|ref|YP_003581287.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|50840147|gb|AAT82814.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|291375251|gb|ADD99105.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|313764422|gb|EFS35786.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA1]
 gi|313772196|gb|EFS38162.1| 3'-5' exonuclease [Propionibacterium acnes HL074PA1]
 gi|313807552|gb|EFS46039.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA2]
 gi|313810061|gb|EFS47782.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA1]
 gi|313815960|gb|EFS53674.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA1]
 gi|313818593|gb|EFS56307.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA2]
 gi|313820361|gb|EFS58075.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA1]
 gi|313822834|gb|EFS60548.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA2]
 gi|313825235|gb|EFS62949.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA1]
 gi|313830390|gb|EFS68104.1| 3'-5' exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833761|gb|EFS71475.1| 3'-5' exonuclease [Propionibacterium acnes HL056PA1]
 gi|314915414|gb|EFS79245.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA4]
 gi|314920115|gb|EFS83946.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925249|gb|EFS89080.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA3]
 gi|314931637|gb|EFS95468.1| 3'-5' exonuclease [Propionibacterium acnes HL067PA1]
 gi|314955692|gb|EFT00094.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA1]
 gi|314958090|gb|EFT02193.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA1]
 gi|314959968|gb|EFT04070.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA2]
 gi|314967866|gb|EFT11965.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA1]
 gi|314973393|gb|EFT17489.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976071|gb|EFT20166.1| 3'-5' exonuclease [Propionibacterium acnes HL045PA1]
 gi|314978539|gb|EFT22633.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA2]
 gi|314983908|gb|EFT28000.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA1]
 gi|314989898|gb|EFT33989.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA3]
 gi|315084278|gb|EFT56254.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA2]
 gi|315085621|gb|EFT57597.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA3]
 gi|315088327|gb|EFT60303.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA1]
 gi|315095938|gb|EFT67914.1| 3'-5' exonuclease [Propionibacterium acnes HL038PA1]
 gi|315098569|gb|EFT70545.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA2]
 gi|315101430|gb|EFT73406.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA1]
 gi|315105619|gb|EFT77595.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA1]
 gi|327326219|gb|EGE68009.1| putative ribonuclease D [Propionibacterium acnes HL096PA2]
 gi|327330288|gb|EGE72037.1| putative ribonuclease D [Propionibacterium acnes HL097PA1]
 gi|327331905|gb|EGE73642.1| putative ribonuclease D [Propionibacterium acnes HL096PA3]
 gi|327443108|gb|EGE89762.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA2]
 gi|327445890|gb|EGE92544.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA2]
 gi|327448129|gb|EGE94783.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA1]
 gi|327450750|gb|EGE97404.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA3]
 gi|327453907|gb|EGF00562.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA2]
 gi|328753437|gb|EGF67053.1| 3'-5' exonuclease [Propionibacterium acnes HL020PA1]
 gi|328754168|gb|EGF67784.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA1]
 gi|328760820|gb|EGF74386.1| putative ribonuclease D [Propionibacterium acnes HL099PA1]
          Length = 412

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|314918304|gb|EFS82135.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA1]
          Length = 412

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY-----AWDDEPVKLW 45
            DIET     +     ++G     E              I + ++       D+  VK  
Sbjct: 396 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVK-- 453

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN 103
           D      +    L++      + VAHN+ F+    K K    ++      + T  L+R  
Sbjct: 454 DAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRHL 511

Query: 104 ---GLPSSLKNACLALNFS 119
                   L      L   
Sbjct: 512 YKDLKNYKLDTLAEHLQVK 530


>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 231

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 32/153 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------ 54
           + ++ +D ET               E   + L         V       +  +P      
Sbjct: 5   LREIVLDTETTGLD---TGSGHRIIEIGCVELIN-RIPTGKVFHRYLNPERDIPYHSFKI 60

Query: 55  ----SDL---LQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                +         D            + V HN+ F+         K     I S R +
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNAGLISSDRVL 120

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
            T  LAR    G P+SL   C   + S    ++
Sbjct: 121 DTLPLARKKFAGSPASLNALCKRFDISLENREL 153


>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
          Length = 388

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 16/232 (6%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 55  PQLGLIQL-FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG-- 110

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--Y 145
                 + T ++A   G    L      L       +   G AL     +    + P   
Sbjct: 111 CTPFPMVDTQLMAAFLG--HGLSTGFATL------VEEYLGVALDKSESRTDWMARPLTQ 162

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                       L   Y K   + T   +   +   + +  +    +  N+    +D+  
Sbjct: 163 KQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAV-QQESDLLVSKRIRETNEENAYLDIKG 221

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDM 256
             +L+       K L     +       +    +     L +   G+     
Sbjct: 222 AWQLKPSELAVLKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTSFKK 273


>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 36/179 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S+L +D+E              Y   Q    L   +   +   L        M   L + 
Sbjct: 276 SELAVDLE-----------HHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEV 323

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119
             +  ++ + H S  + +  ++  G+ +       T   A+   L   SL          
Sbjct: 324 FANPKIVKIFHGSRNDMLWLQRDFGVYV--VNLFDTFFAAKKLDLAKKSLDYL------- 374

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                       +  +CK  +D                +   Y ++D      ++ RL 
Sbjct: 375 ------------LQHYCKIRLDKRFQLADWRMRPIPPNMLR-YARQDTHYLLYVYDRLR 420


>gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 59/233 (25%), Gaps = 49/233 (21%)

Query: 2   SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAY-------------AWDDEPVK 43
             + +D ET      S   +    +   A    I    +             + +   +K
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGA--VEIIDRCFTGNNFHVYIQPGRSIESGALK 62

Query: 44  LWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI---DIPSKRW- 93
           +   T        +  D+     +  +  + V HN+ F+     + L I    I    + 
Sbjct: 63  VHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFC 122

Query: 94  --ICTSVLARTNGLPSS--LKNACLALN--------FSEHLTKMEEGKALIARFCKGSID 141
             I T  +AR         L   C             S  +     GK            
Sbjct: 123 SIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGK---LYLLMTGGQ 179

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +     N+ + ++   +   +    T  +   L P            Q +
Sbjct: 180 DSLFSDNTINYKENFKKLKK-NIQLKNNTLRI---LHPTLKENDLHEKYLQYM 228


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 10/76 (13%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL- 105
             + +   ++  D   + VAHN+ F+         K   I       I T  L+R     
Sbjct: 492 EEVLTLFKEFAGDS--ILVAHNASFDMGFLNTSNAKH-NIPDAENPVIDTLELSRFLHPQ 548

Query: 106 --PSSLKNACLALNFS 119
                L         +
Sbjct: 549 FKSHRLNTLAKKYGVN 564


>gi|312218970|emb|CBX98915.1| similar to DNA polymerase gamma [Leptosphaeria maculans]
          Length = 1168

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 69/261 (26%), Gaps = 8/261 (3%)

Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381
           G   +   +  Q      +T+                     ++S + A  G   V AD+
Sbjct: 660 GRGKKVGFILPQIIPMGTITRRSVENTWLTASNAKKNRVGSELKSMVRAPEGYCFVGADV 719

Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMEL 437
              E  + + + G+        N          KA  T +   +       R   KV   
Sbjct: 720 DSQELWIAS-LIGDATFKLHGGNAVGFMTLEGTKAAGTDLHSRTAGILGISRNAAKVFNY 778

Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497
              Y  G K   T+       L        +   +++ +  ++    + ++       + 
Sbjct: 779 GRIYGAGLKFAATLLRQFNPTLTDEQTLKTANDLYQNTKGKKTVRKQLHERPFWRGGTES 838

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
            +    E   +  R        L   +TE         G     R+    +     +   
Sbjct: 839 FVFNKLEDFAEQER---PRTPVLGAAITEALQRRYLTRGGFMTSRINWAIQSSGVDYLHL 895

Query: 558 VHIVLPSSRRLVYSDVKGDCS 578
           + + +    R    D +   +
Sbjct: 896 LIVSMDFLTRRYNLDARLAIT 916



 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 44/389 (11%), Positives = 95/389 (24%), Gaps = 48/389 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQY-- 60
           L  D E           V           CA +     V L       +     L+    
Sbjct: 185 LTFDTE-----------VMWKQTSFACMACAVSPTAWYVWLSPWLLGESKSDRHLIPLGD 233

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           +    ++ V HN  ++R    +   I      +I T      +   + +           
Sbjct: 234 ISTPRII-VGHNIGYDRARIAEEYNIQQSKNAFIDTM---SLHVASNGM--CSRQRPSWM 287

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K +E K  IA     ++++                   +  R    +     +    
Sbjct: 288 QHKKSQEMKDKIA----TAVENSELLPIPNQGPVLDDEEELWISRSAVNSLREVAKFHCN 343

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
              ++        ++  G R  LD +L       +   ++ + +  +            A
Sbjct: 344 ITMDKAQREYFGELDRAGIREKLDELLDYCAGDVETTHRVYQKVFPIFMETCPHPVSFAA 403

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300
           LR     I  +               +       K+          +   +L  L++   
Sbjct: 404 LRFLAAEILPV---------------NETWDAYVKNAEATYRKLDDAVKERLVALTDKAL 448

Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR---GETIADPL 357
                              WSG   +     ++        +  +        +      
Sbjct: 449 EVKEQPEVYNNDPWLSQLNWSGQEIKMAKGKKKGDPPRPAARQKKPGMPKWYKDLFTSNT 508

Query: 358 GLASDCVRSCI------IASNGKKLVVAD 380
              +  VR+ +      +A +G  LV +D
Sbjct: 509 APLNLTVRTRVAPILLRLAWDGYPLVWSD 537


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVI-----------TLCAYAWDDEPVK----L 44
            +  D+ET    P     +   A   E   I               Y  ++        +
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVEHGEITERFSTFVNPEVPIPYRIEELTSIRDDMV 534

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
            D  +   +    +++  D   + VAHN+ F+     K     GI+      I T  LAR
Sbjct: 535 IDAPKIETILPQFMEFCGDA--IMVAHNADFDMSFIIKNCERQGIE-KEFTIIDTVALAR 591

Query: 102 TNGLPSS---LKNACLALNFS 119
                 +   L     AL  S
Sbjct: 592 ILLPQLNRFKLDTVAKALGVS 612


>gi|262212077|gb|ACY35655.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +  ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMAGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHR 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L       K     + + +A
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKDAKKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 33/144 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVI------TLCAYAWDDEPVKLWDRTEQS----- 51
            + ID+ET       + GV    E A +       L  ++   +PV              
Sbjct: 5   YIAIDVETTGL----EAGVDEIIEIAAVKFNADEVLETFSTLVQPVHSLPLNSSRLTGIT 60

Query: 52  -----------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
                       +      +L  +    V HN  F+  +  +  G+ +P   +  T  LA
Sbjct: 61  ADMLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRML-RAQGMRLPQPAF-DTFELA 116

Query: 101 RTNGLP---SSLKNACLALNFSEH 121
                      L      L     
Sbjct: 117 TLLMPRTPAYRLSALAATLGIHHD 140


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 21/106 (19%)

Query: 1   MS----KLFIDIETRSPQPLPKVGVWAYA----EQAVIT-----LCAY--AWDDE----P 41
           M     +  ID+ET    P     V   A    ++  I      L     A         
Sbjct: 1   MKNHHLQAAIDVETTGLFPGYGDRVVEVAAVLVDEGQIVSEFSSLIRVTKAIPRHVSMIH 60

Query: 42  VKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG 85
               D      +P ++   L D   T + VAHN+ F+    +   G
Sbjct: 61  GITNDMLADQPLPEEVYPALGDFIGTALLVAHNARFDLAFLRHEFG 106


>gi|164688423|ref|ZP_02212451.1| hypothetical protein CLOBAR_02068 [Clostridium bartlettii DSM
           16795]
 gi|164602836|gb|EDQ96301.1| hypothetical protein CLOBAR_02068 [Clostridium bartlettii DSM
           16795]
          Length = 961

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 58/209 (27%), Gaps = 23/209 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PS 107
             +  D L+++ D+  + + HN  FE    +  +G ++   +++ +  LA          
Sbjct: 8   EEIKDDFLEFIEDK--IIICHNKQFEEKFLEFHIG-ELK-NKFLDSMELACVLEPFQREF 63

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           +L      L       K +E    ++                 + ++       Y     
Sbjct: 64  NLD----YLKKQITKDKNDEIHRALSDTIDTIDVVNALILRFKDRLEKEDKLTLYP---- 115

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227
             T E+   L        +   +    +         +  +  E    ++  L E+ +  
Sbjct: 116 -LTFEIDSYLNKFKLENWEWSDIINNADFSLKEKTKTVFEE--EKNQTKKSNLKEEEIYK 172

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDM 256
             G  ++          L      D    
Sbjct: 173 LLGDNKN-----HYEELLKEKDIWDSKKG 196


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVITL-CAYAWDDE--------------PVKL 44
            +  DIET     +    +   A   E   I    +   + E                 +
Sbjct: 452 FVVFDIETTGFSSVKDKIIEIGAVKVENGKIVSRYSTFVNPEVPIPFEITKLTSITDAMV 511

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  +   +  + ++Y+ D   + VAHN+ F+    +   + LG++        T  LAR
Sbjct: 512 IDAPKIETVLPEFMEYVGDA--VLVAHNAGFDVGFIEENCRRLGMERKLTSV-DTVALAR 568

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L      L  S
Sbjct: 569 VLLPTLSRYKLNIVAKTLGIS 589


>gi|297544667|ref|YP_003676969.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY-----AWDDEPVKLW 45
            DIET     +     ++G     E              I + ++       D+  VK  
Sbjct: 396 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVK-- 453

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN 103
           D      +    L++      + VAHN+ F+    K K    ++      + T  L+R  
Sbjct: 454 DAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRHL 511

Query: 104 ---GLPSSLKNACLALNFS 119
                   L      L   
Sbjct: 512 YKDLKNYKLDTLAEHLQVK 530


>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
 gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 384

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 21/164 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D  V L D              + D+ ++ V H++  +       LG  
Sbjct: 38  PQLCLIQLASPDVTV-LIDPIAPDIDLQPFFDLMIDKKIVKVFHSARQDIETI-YYLGGV 95

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T +     G                           I + C G         
Sbjct: 96  I-PSPLFDTQIAGSICGFG------------------DSISYDQIVQHCTGHHLDKSSRF 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           T  +     +    Y   DV   R+++  L    +  +    +D
Sbjct: 137 TDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHWMD 180


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 494 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 552

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 553 FGLGVLSKKFGVS 565


>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
 gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
          Length = 401

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 34/189 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E      +     +  A      L     D     L D    +   P      L
Sbjct: 53  FVAVDTE-----FMRVDTFYPIAG-----LVQVG-DGRRAYLIDPLAVRDWHP--FATLL 99

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  V+ V H    +  +  +  G     +    T + A    +  S+      L  +  
Sbjct: 100 DDAAVVKVLHACSEDLEVLLRLTGS--LPQPLFDTQLAAGYLNIGFSMGY--SRLVQAVL 155

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G+       +                   ++   Y   D +   EL++ L+P  
Sbjct: 156 GIELPKGETRSDWLQRPLS----------------EMQVRYAAEDAQHLAELYEALLPKL 199

Query: 182 DGERDLWLL 190
             ++  W+L
Sbjct: 200 SDDKRAWVL 208


>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
 gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
           radiodurans R1]
          Length = 197

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 30/144 (20%)

Query: 6   IDIETRSPQP----LPKVGVWAYAE-------QAVIT---------LCAYAWDDEPVKLW 45
            D+ET    P    + ++G             +             L +  W  + V   
Sbjct: 26  FDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQRVHGI 85

Query: 46  D--RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSV 98
                 ++    D+L    D  +    VAHN  F+        + LG+    +R +CT  
Sbjct: 86  SDEMVRRAPAIKDVLPDFFDFVDGSAVVAHNVSFDGGFMRAGAERLGLSWAPERELCTMQ 145

Query: 99  LARTN---GLPSSLKNACLALNFS 119
           L+R         +L      L   
Sbjct: 146 LSRRAFPRERTHNLTVLAERLGLE 169


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 25/140 (17%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--------------L 44
            +  DIET         + ++G     + A++   +   + +                 +
Sbjct: 467 YIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEKFSTFVNPKRPIPFEITQLTSITDEMV 526

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-DIPSKRW-ICTSVLART 102
            D  +  ++  + L+++ D   + VAHN+ F+    ++     +I      + T  LAR 
Sbjct: 527 LDAPDIESVLPEFLEFVGDG--VLVAHNAGFDVGFIEQNCRYQEIEPDFVSVDTVALARV 584

Query: 103 NGLPSS---LKNACLALNFS 119
                S   L     AL  S
Sbjct: 585 LLPTLSKYKLNIVAKALGIS 604


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 249

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 49/154 (31%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVK----------------- 43
             + ID ET    P          +Q  I   A   +D   V                  
Sbjct: 8   KFICIDCETTGLDP----------QQDRIIEVAVMCFDGNQVYAQMESLINPECPIPETS 57

Query: 44  ----------LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK----KTLGI--D 87
                     + D+   + +   +L+ + D   + + H   F+  +      +  GI   
Sbjct: 58  IAIHHITQDMVKDKPTINHVLPQILELISD--HIIIGHGVGFDIEILAVAAERH-GIPCK 114

Query: 88  IPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119
           I   R++ T  +AR  G     SL+      N  
Sbjct: 115 IRKNRFLDTLRMARLYGESPVNSLEYLRKHFNIP 148


>gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
 gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
          Length = 240

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 29/145 (20%)

Query: 3   KLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCA--------YAWDDEP--VKLWDRT 48
            + +D+ET         + ++G         +             A ++     +     
Sbjct: 6   YVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFITNL 65

Query: 49  EQ------SAMPSDL--LQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
                      P +   L  L++     + VA N+ F+     +    DI  +R+ CT  
Sbjct: 66  TGITEEDLEDAPEEWDALDELQNFIGDAIVVAQNAPFDLSFISR---GDIEPERFYCTRA 122

Query: 99  LARTNGL--PSSLKNACLALNFSEH 121
           +AR       +SLK+    +  S  
Sbjct: 123 MARFVEPELSASLKDVTKRIGISLD 147


>gi|145614196|ref|XP_364068.2| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
 gi|145021143|gb|EDK05272.1| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 5/163 (3%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +++ + A  G   V AD+   E  + + + G+        N          KA
Sbjct: 656 KNRVGSELKAMVKAPPGYCFVGADVDSEELWIAS-VVGDATFKLHGGNAIGFMTLEGTKA 714

Query: 417 FNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T +   +       R   KV      Y  G K    +      +L +      ++  +
Sbjct: 715 AGTDLHSRTASILGITRNDAKVFNYGRIYGAGLKFAGQLLRQFNPNLSEQETVETASKLY 774

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
              + A+++   +  +       +  +    E   +  R +  
Sbjct: 775 AATKGAKTNRKALYKRPFWRGGTESFVFNKLEEFAEQERPRTP 817


>gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583]
          Length = 341

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 65/261 (24%), Gaps = 40/261 (15%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S+L ID E     T                   + L   A     ++  D    + +   
Sbjct: 19  SRLAIDTEFKRINTYY---------------PQLCLVQIAT-THSLECIDVLSINDL-EP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L + L       + H++  +   F   L   IP      T + A     P         L
Sbjct: 62  LFEKLYRSKTEWIVHSARQDIEAF-YHLSKRIPV-SLFDTQIAASLLNYP---------L 110

Query: 117 NFSEHLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             S  L         L   F +    + P       +      +       ++    + K
Sbjct: 111 QISYQLITEVLQDIQLDKSFTRFDWTTRPLPADVVEYALDDVRYLLPNFEKLKHELTISK 170

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRID--LDLVLKLQELIAQERKKLDED---IVKLTDG 230
           ++    D E    L          +I      + +L +    +  KL        +  + 
Sbjct: 171 KIQ-WLDEETRFLLDQDLYEPSIEKICYKTKGLSQLGKKFQDKAIKLAAWRENNAQQKNK 229

Query: 231 IIRSSRQTYALRMYLFLITGI 251
             +       L  Y      +
Sbjct: 230 PRKWIMSDEKLLDYACGKNKL 250


>gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188]
 gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635]
 gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188]
 gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635]
 gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341]
 gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIETRS-------PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+    D ET S          + KV      ++            E    W        
Sbjct: 12  MNFYAFDFETASYDKHSACSIAIVKVENSQIVDEFYTL-----IKPETPFFWRNTQIHGI 66

Query: 46  ---DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              D       P    Q         + VAHN+ F+  +        G++ P+   +CT 
Sbjct: 67  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
             +R          L   C  LN +
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT 151


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   + ++  +++ D   + VAHN+ F+        +  G+   +   I T  L+R
Sbjct: 482 VDAPEIDDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERAGLGNYTNGVIDTLELSR 539

Query: 102 TNGL---PSSLKNACLALNFS 119
           T         L          
Sbjct: 540 TINTEFGKHGLNFLAKKYGVE 560


>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 743

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 13/130 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQ---SAMP 54
           +++L  D+E  +       G   + ++  +  C        V    + D        A+P
Sbjct: 291 LNELSFDLEMHNHGSGSGGGSSKFPQKGGLRTCLIQMTANTVVKDYVIDPLAPNVWDAIP 350

Query: 55  SDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSL 109
             L     D  ++ + H     +     +  GI I       T   +            L
Sbjct: 351 HYLGPLFSDPRIVKIGHGIGGMDTTSLHRDFGIVI--VNAFDTFEASAVLLHGKKGGLGL 408

Query: 110 KNACLALNFS 119
              C      
Sbjct: 409 AKLCKHYGLP 418


>gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 218

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 69  VAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
           VAHN+ F+R  ++   +  G+      + CT +L+R         SL      L   
Sbjct: 89  VAHNAAFDRKFWQAELQHAGLA-APHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLP 144


>gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10]
          Length = 177

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLWDRTEQS- 51
           M+ + +D ET +  P     +         I      +     ++D   +++   T    
Sbjct: 1   MNFIAMDFETANHFPESACSLALVMVRDNKIVDRFYTVINPQMSFDARNIQVHQITADDV 60

Query: 52  ---AMPSDLLQY---LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                 +++      L    ++  AHN+ F+  +      +   I+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNTRFDTNVMRQSLARY-NIEEPHYLVIDTLATSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     AL+  
Sbjct: 120 LFEPELPNHKLDTVSDALDVE 140


>gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp.
           2_1_7]
 gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 163

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 38/143 (26%), Gaps = 26/143 (18%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWA-YAEQAVITLCAYA-WDDEPVKL------------W 45
           M     ID ET + Q      V         IT   Y+  + EP                
Sbjct: 1   MKDFAAIDFETANNQRSSVCSVGIVIVRDGEITDTFYSLINPEPNYYNYWCSQVHGLTRK 60

Query: 46  DRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           D       P     +   +    +  VAHN  F+    K   +   +D P   +  T   
Sbjct: 61  DTDNAPVFPEVWRQIEPLIE--GLPLVAHNRPFDEGCLKAVFRVYQMDYPCYEFYDTLSA 118

Query: 100 ART---NGLPSSLKNACLALNFS 119
           +R          L     A  + 
Sbjct: 119 SRRALPCLPNHQLHTVAEACGYQ 141


>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
           [Psychrobacter arcticus 273-4]
 gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Psychrobacter arcticus 273-4]
          Length = 527

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 31/148 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            +L +D ET    PL         E  ++ +    +  E + ++   ++      +    
Sbjct: 302 RQLIMDTETTGLDPLKG---DRIIEVGIVEMIGRKFTGEKLHVYINPQRGMDEEVIRIHG 358

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTL-GIDI----PSKRWIC 95
               +L D+                   +AHN+ F+          + +       R   
Sbjct: 359 ISEAFLTDKPTFDQVAQSLYDFMDGAEIIAHNASFDMNFLNMEFAKVGMHDFAERVRVTD 418

Query: 96  TSVLA--RTNGLPSSLKNACLALNFSEH 121
           + V+A  +  G  ++L      L+  + 
Sbjct: 419 SLVMAKQQYPGQKNTLDALVRRLDVGKQ 446


>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 430

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 10/42 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD 46
            +D ET S   +           A I   +++ +        
Sbjct: 368 ALDTETTSLDEMR----------AEIVGISFSTEPGKGATIP 399


>gi|320544544|ref|NP_001188695.1| Muscle-specific protein 300, isoform G [Drosophila melanogaster]
 gi|318068310|gb|ADV36945.1| Muscle-specific protein 300, isoform G [Drosophila melanogaster]
          Length = 13540

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 16/227 (7%)

Query: 141   DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
             ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 12781 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 12840

Query: 201   IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
              + D     +  + + + +L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 12841 FERDQKSHSKHKLEERQMELRAKLEELESQSV-NLRQLEQIYAKLAMSAGVEPENIQKLT 12899

Query: 261   LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L             K ++            + + L +A+  D +L           T   
Sbjct: 12900 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 12944

Query: 321   SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 12945 NAIQKALEQLPSAENQQTSKAEPKAVLQRLESLEKKLQDAQQHVQQA 12991


>gi|120603761|ref|YP_968161.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
            vulgaris DP4]
 gi|120563990|gb|ABM29734.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 1053

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 45/184 (24%)

Query: 2    SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW----DDEPVKLWDRTEQSAMPSDL 57
              + +D+ETR  +   +VG W  A++      + A      D+    + + E  AM   L
Sbjct: 879  RVMVLDVETR--RSAAEVGGWHRADR---MGVSIAVLHDSADDSFTAYPQDEVPAMLHRL 933

Query: 58   LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSV------LARTNGLPSSLK 110
             +       + V  N   F+  +       D+ +   +   +      L+       SL 
Sbjct: 934  REA-----DLVVGFNIVRFDYTVLSPFASFDLHTLPTLD-MLQKVKDRLSYRV----SLD 983

Query: 111  NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
            N                              +      R        L  EYC++DVE T
Sbjct: 984  NLA-------------------QATLNAPKSADGLQALRWWQEGRLDLITEYCRKDVELT 1024

Query: 171  RELF 174
            R+L+
Sbjct: 1025 RDLY 1028


>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 242

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 34/153 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--------------------AYAWDDE 40
           + ++ +D ET         G     E   I L                      YA    
Sbjct: 7   IREIVLDTETTGLD---ADGGDRIIEMGCIELIDRVFTGKVFHEYINPERDIPYYATKI- 62

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSK-----RW 93
                D  +     S++     D     + V HN++F+    K  L   I        + 
Sbjct: 63  HGITVDMLKDKPKFSEIADKFLDFIGNSVLVIHNAVFDIKFIKMELD-KIQKSYNSDFQV 121

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
           + T +LAR    G+ S+L   C   N S    K
Sbjct: 122 VDTLILARKKFPGVSSTLDALCKRFNISLQDRK 154


>gi|289427165|ref|ZP_06428881.1| 3'-5' exonuclease [Propionibacterium acnes J165]
 gi|289159634|gb|EFD07822.1| 3'-5' exonuclease [Propionibacterium acnes J165]
          Length = 395

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 21  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 70

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 71  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 121

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 122 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 165

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 166 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 223


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWA-YAEQAVIT----------LCAYAWDDEPVKLW---D 46
           ++ + ID ET + +                I             +Y++ +  +      D
Sbjct: 4   INFIAIDFETATGKRASICEAGICVVRDGKIVETRSWLVRPQGNSYSYWNMQIHGIRPND 63

Query: 47  RTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
             +    P    ++ +YL+D  V+ VAHN+ F+    +      G++     + C+   A
Sbjct: 64  TADSPEFPEVWTEISKYLKDIPVL-VAHNAAFDIGCIRHSLELYGMEKLEITYYCSLRAA 122

Query: 101 RTNGLPS--SLKNACLALNFS 119
           R        SL   C      
Sbjct: 123 RKLYSFGCNSLDYLCDQFRIP 143


>gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 59/233 (25%), Gaps = 49/233 (21%)

Query: 2   SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAY-------------AWDDEPVK 43
             + +D ET      S   +    +   A    I    +             + +   +K
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGA--VEIIDRCFTGNNFHVYIQPGRSIESGALK 62

Query: 44  LWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI---DIPSKRW- 93
           +   T        +  D+     +  +  + V HN+ F+     + L I    I    + 
Sbjct: 63  VHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFC 122

Query: 94  --ICTSVLARTNGLPSS--LKNACLALN--------FSEHLTKMEEGKALIARFCKGSID 141
             I T  +AR         L   C             S  +     GK            
Sbjct: 123 SIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGK---LYLLMTGGQ 179

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +     N+ + ++   +   +    T  +   L P            Q +
Sbjct: 180 DSLFSDNTINYKENFKKLKK-NIQLKNNTLRI---LHPTLKENDLHEKYLQYM 228


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 49  EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNG 104
               + S  L ++RD    + VAHN+ F+    +   K +G+  P    I T  LA+   
Sbjct: 471 HIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDTLTLAQ--- 527

Query: 105 LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                       N        +       I    +G   +  +D  RA  +   ++  + 
Sbjct: 528 ---------KYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDA-RATALIFLEMLEQL 577

Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
             + +    +L   L      ER   +     N +GY     L+         ++ +L +
Sbjct: 578 EAQKIFNFYDLQGSL--DIKFERPYHVNIIVKNKKGYNNLFHLISDALTRDFIKKPRLLK 635

Query: 223 DIVKLTDG 230
              +    
Sbjct: 636 SNFEKYRE 643


>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
 gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
          Length = 389

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D+E  S           +A +A +     A   + + L+D        S L   + 
Sbjct: 29  ELAVDLEADS----------MHAFRARLCFLQVATPTD-IFLFDTLAPGVDASLLAPLMA 77

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LALNFS 119
           D       H +  +     +     I  +    T   A   G P   L +     L   
Sbjct: 78  DPERTKYFHAAQGDLQFLAEA---GIRVRGLFDTHRAATLLGWPKVGLADIARERLGVE 133


>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
 gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
          Length = 416

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 25/166 (15%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            L     +   + L D      + + L + L    V  + H +  +     +     +  
Sbjct: 65  MLVQLKREGAGIWLVDPEALDGL-APLQEALA--GVEWILHAASQDLPCLAEQ---GLRP 118

Query: 91  KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
            R   T + AR  GLP         L       +   G  L          +  +     
Sbjct: 119 DRLFDTELAARVAGLPR--VGLAAVL-------EELLGVTL----------AKEHSAADW 159

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           +     +    Y   DVE    L + LI   + +  L   +Q    
Sbjct: 160 SVRPLPEAMLAYAALDVELLVPLREALIARLEADGKLAWAEQEFEH 205


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 34/140 (24%)

Query: 6   IDIETRSPQP-----LPKVGVWAYA-------EQAVITLCAYAWDDE--------PVKLW 45
            D ET    P     + ++G    +       E           D +        P+   
Sbjct: 544 FDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQL-----VDPQRPIPPAGIPIHGI 598

Query: 46  --DRTEQSAMPSDLLQYL--RDETVMCVAHNSLFERIL--FKKTLGIDIPSKRWICTSVL 99
             D          +L       +  + VAHN+ F+      K+     +  +  + T +L
Sbjct: 599 KPDMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLL 658

Query: 100 ARTNGL---PSSLKNACLAL 116
           +           L+      
Sbjct: 659 SAVVHPNQESHRLEAIAERF 678


>gi|73979345|ref|XP_539984.2| PREDICTED: similar to Werner syndrome protein [Canis familiaris]
          Length = 1680

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 79/305 (25%), Gaps = 46/305 (15%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +    V+   + + + L      +    L+  +  S  P  L   L +E +        
Sbjct: 307 DMEWPPVYTKRKPSRVALIQLCVSENKCYLFHISSMSVFPQGLKMLLENEAIKKAGVGIK 366

Query: 75  ---------FERILFKKTLGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
                    F+    K  + + D+ +++  CT           SL      L        
Sbjct: 367 GDQRKLLCDFDID-LKNFVELTDVANEKLKCT--------ETWSLNGLVKHL-------- 409

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
              GK L+        +               +    Y   D  A   ++++L  L +  
Sbjct: 410 --FGKQLLKDRSIRCSNWG--------DFPLTEDQKLYAATDAYAGLIIYQKLEILGNAV 459

Query: 185 RDLWLLDQTINDRGYRID-LDLVLKLQEL---IAQERKKLDEDIVKLTDGIIRSSRQTYA 240
                      +    ID    +  + E    +A+      + +       +  S  +  
Sbjct: 460 ERF--AINKKEEEILPIDVKKQLTSISEEMMDLAKHLPDALKKLEDPQRVSLLLSAISEN 517

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS---SGSAILKLNTLSE 297
           L     +I G    ++   T   +LS  + T         R               T   
Sbjct: 518 LYSLRKMIIGSPEAELRHSTNVHLLSLGDPTADEVQQKQIREHKFFPKVKDETWDTTFDN 577

Query: 298 AVSSD 302
            +  D
Sbjct: 578 LIKHD 582


>gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937]
 gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937]
          Length = 373

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 24/112 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L      D    +     +   P  
Sbjct: 23  SEVALDTEFVRTRTYY---------------PQLGLIQLYDGDNLSLIDPLAIRDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
               L++  V    H    +  +F    G       +I T +LA   G P S
Sbjct: 66  FRALLQNPQVTKFLHAGSEDLEVFLNAFGG--LPSPFIDTQILAAFLGKPLS 115


>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
 gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
          Length = 702

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/263 (9%), Positives = 67/263 (25%), Gaps = 40/263 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + +  ++     I       T   +R   +   SL++    
Sbjct: 216 LQEPFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERNSLEHL--- 270

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L                  FC  +      +    +     ++   Y + D      ++ 
Sbjct: 271 LLH----------------FCGVTAKKEYQNADWRSRPLPDEMIK-YAREDTHYLLYIYD 313

Query: 176 RLIPLSDGE------------RDLWLLDQTINDRGYRIDLDLVLKL-QELIAQERKKLDE 222
            +      E            +    +     ++    D   +     +    + K+L  
Sbjct: 314 LMRQRLQKESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDAKQLAV 373

Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLI 278
                      + ++  +    L     I++       +  +               +LI
Sbjct: 374 VAALHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLELI 433

Query: 279 LNRLASSGSAILKLNTLSEAVSS 301
              + ++         ++E +  
Sbjct: 434 AYTVWNALKYSYAYEGIAEQLKK 456


>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           +L +D+E  S           +A +A +     A   + + L+D        S L   + 
Sbjct: 19  ELAVDLEADS----------MHAFRARLCFLQVATPTD-IFLFDTLAPGVDASLLAPLMA 67

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LALNFS 119
           D       H +  +     +     I  +    T   A   G P   L +     L   
Sbjct: 68  DPERTKYFHAAQGDLQFLAEA---GIRVRGLFDTHRAATLLGWPKVGLADIARERLGVE 123


>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
          Length = 1631

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 23/117 (19%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D+E     T         G+        ++L   +  ++   +   T        L 
Sbjct: 250 IAVDLEHHDFRTY-------TGL--------LSLMQISTREKDWVVDTLTPWRHRLEILN 294

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACL 114
           +   D T + V H +  + +  ++ LG+ I       T         P  SL     
Sbjct: 295 EVFADPTKIKVFHGATSDIVWLQRDLGLYI--VGLFDTYFACDCLEYPARSLAYLLK 349


>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
 gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
           12198]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 28/143 (19%)

Query: 5   FIDIETRSPQP----LPKVGVWAY-----AEQAVITLCAYAWDDEPVKL--------WDR 47
           F+DIET   +P    + ++G   Y      +     + + +  +   +L         D 
Sbjct: 69  FVDIETTGSKPNHSSIIEIGAIKYHGGEIIDTFETLVFSQSVPENITELTGIDAGMLADA 128

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERIL-----FKKTLGIDIPSKRWICTSVLAR- 101
             +  +     ++L +   + VAHN +F+         +      +  +  +CT  LAR 
Sbjct: 129 PSEREVLQRFRKFLGNS--VFVAHNVVFDYGFISDRLLRYNEPYLLNPR--LCTVELARR 184

Query: 102 -TNGLPSSLKNACLALNFSEHLT 123
                  SL +    L       
Sbjct: 185 GILSARYSLGHLNAFLGIGIDKQ 207


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 38/158 (24%), Gaps = 51/158 (32%)

Query: 3   KLFI-DIETRSPQPLPKVGVWAYAEQAVITLCAY------AWDDEPVKLWDRTEQSAMPS 55
            + I D ET         G+  + +   I   A       A                +P 
Sbjct: 506 TITIFDTETT--------GLDVFHDD--ILQIAAVKVRNGAVVPGSALSLHLESDREIPE 555

Query: 56  DL-------------------LQYLRD-----ETVMCVAHNSLFERILFKKTLGIDIP-- 89
            L                    + L+         + + HN+ ++  +    L  ++P  
Sbjct: 556 MLGDIVNPIIEERRNQTLLPRREALQRFVDYARGTVLLGHNADYDIHILANNLRREMPET 615

Query: 90  -----SKRWICTSVLARTNGLP---SSLKNACLALNFS 119
                   +  +  L R          LK     L+  
Sbjct: 616 ALPNELSDYFDSLHLIRLLRPGLRQYKLKYLLEVLHLE 653


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 481 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 538

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 539 KSHRLNTLSKKFGVN 553


>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
 gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 63/269 (23%), Gaps = 40/269 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             ID E        +   + Y ++A +           +       +  + + L   L  
Sbjct: 36  FAIDTE--------RASGYRYDDRAFVVQIR-RRGAGTMLFAPEGHREELTAALAPVLN- 85

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H +  +         + +       T + AR  G            N    + 
Sbjct: 86  -GTEWIIHAAHSDLPCLGW---LGLFPGSIFDTELAARLAGF--------ERPNLGTMVA 133

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +          F         Y     +  Q  +    Y   DVE   EL   L  +   
Sbjct: 134 E---------LFDVELEK--GYGDADWSTPQLSEELKAYAALDVELLLELADALRDILAE 182

Query: 184 ERDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQER--KKLDEDIVKLTDGIIRSSR 236
           +  +               G         +  + I+  R   +L             + R
Sbjct: 183 QDKMDWALEEFSAIVQEHSGDFAPQPHTWRDLKGISSLRSGSQLAAARELWFKRDAIARR 242

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSIL 265
              A    L   T +++      T   + 
Sbjct: 243 TDTAPGRVLANKTLVEIARTLPTTAGELA 271


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 346

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 11/219 (5%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
              + L    +D + + L D      M S  +  L+D +V+ V H    +  +F  + G 
Sbjct: 13  HPQLGLIQL-YDGQNLSLIDPKVIDDM-SPFIDLLKDPSVLKVLHACGEDLEVFHNSFG- 69

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                  + T ++A   G    L     AL       ++++ ++      +         
Sbjct: 70  -CLPHPMVDTQLMAAFLG--HGLSTGFAALVEQYLEVELDKSESRTDWLARPLTQ----K 122

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
                    + L   +     +  +  + +     + E       +TI      +D+   
Sbjct: 123 QLDYAAADVFYLKPLFSLLLEKIEQVGWWK-AAQQESELLAVKRIKTIEPDLAYLDIKGA 181

Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
            +L+       K L    +K       +    +     L
Sbjct: 182 WQLKPKELAILKPLAAWRLKEAVKRDLALNFIFKESDLL 220


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
           S  +R CIIA  GKKLVV+DL+ IE R+LAW+AGE+WK+ AF   +        K   
Sbjct: 5   SSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTDPDLYKLAG 62


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 11/78 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104
            +  D + ++    +  VAHN+ F+                      + + T V+A+   
Sbjct: 84  QVAQDFINFIDGAEI--VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLH 141

Query: 105 LPS--SLKNACLALNFSE 120
                +L   C       
Sbjct: 142 PGQKNNLDALCKRYGVDT 159


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
 gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 4/79 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
               L    + +    + D      + + +   + +  ++ V H +  +  +     G  
Sbjct: 42  PEFALLQI-YGNGQCWVIDPITIKDL-APVWDIMLNPAILKVFHAARQDIEIIFNEAGG- 98

Query: 88  IPSKRWICTSVLARTNGLP 106
                   T V A   G  
Sbjct: 99  -LPLPLFDTQVAAALLGYG 116


>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 34/153 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--------------------AYAWDDE 40
           + ++ +D ET         G     E   I L                      YA    
Sbjct: 7   IREIVLDTETTGLD---ADGGDRIIEMGCIELIDRVFTGKVFHEYINPERDIPYYATKI- 62

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSK-----RW 93
                D  +     S++     D     + V HN++F+    K  L   I        + 
Sbjct: 63  HGITVDMLKDKPKFSEIADKFLDFIGNSVLVIHNAVFDIKFIKMELD-KIQKSYNSDFQV 121

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
           + T +LAR    G+ S+L   C   N S    K
Sbjct: 122 VDTLILARKKFPGVSSTLDALCKRFNISLQDRK 154


>gi|89094696|ref|ZP_01167632.1| DNA polymerase II [Oceanospirillum sp. MED92]
 gi|89081042|gb|EAR60278.1| DNA polymerase II [Oceanospirillum sp. MED92]
          Length = 785

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             L ID+ET        +    YA+   + L      D + +      +++ +    +Q 
Sbjct: 154 RILSIDLETTMRAD-QILSAAFYADDFQLVLMQGQGIDTDTLDY--CADETTLIHKFIQV 210

Query: 61  LR--DETVMCVAHN-SLFERILFKK 82
           ++  D  +  +  N   F+  + K 
Sbjct: 211 VQQYDPDI-FIGWNVINFDFKVLKN 234


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 480 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 537

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 538 KSHRLNTLSKKFGVN 552


>gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
 gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
          Length = 314

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 22/114 (19%)

Query: 4   LFIDIETRSPQP----LPKVGVWAYAEQA---VITLCA--YAWDDEPVKLWD-------- 46
           + +D ET         + ++G+ A+        I   +  Y+  ++P             
Sbjct: 57  ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116

Query: 47  ----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
                    A     +  L  +  + +AHN+ F+R   +           W CT
Sbjct: 117 ISDEMVRGQAFDDAFVDLLAGKADLVIAHNAAFDRKFVETRFP-AFKKLPWACT 169


>gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
 gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 69  VAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
           VAHN+ F+R  +    +  G+      + CT +L+R         SL      L   
Sbjct: 89  VAHNAAFDRKFWQAEMQHAGLA-APHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLP 144


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 35/155 (22%)

Query: 1   MSKLFIDIETRSPQ----------------------PLPKVGVWAYAE-QAVITLCAYAW 37
           + ++ +D ET                           L       Y +    I   A A 
Sbjct: 7   IRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPDREIDPEAIAV 66

Query: 38  DD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKR- 92
                  L D+   S +  + ++++  +    V HN+ F+        + L         
Sbjct: 67  HGITDEFLHDKPAFSDIADEFIEFI--KGAELVIHNAPFDVGFMDQEFRFLNKRTKPTAE 124

Query: 93  ---WICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
                 T V+AR    G  +SL   C  L      
Sbjct: 125 ISTITDTLVMARKMYPGKRASLDALCRELGIDNKH 159


>gi|313827523|gb|EFS65237.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA2]
 gi|315108646|gb|EFT80622.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA2]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 58/240 (24%), Gaps = 52/240 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDLPCLAMD---GLRPDDLFDTELAGRLLNLPRVSLGPMVERY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E              D    + G  ID     KL  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1398

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 58/218 (26%), Gaps = 47/218 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV----------------KLW 45
             +  D+ET         G+  Y ++      A   ++  +                K+ 
Sbjct: 383 RFIVFDLETT--------GLSKYIDKITEIG-AVKIENGEIIEVFNELVNPEKMIPQKVV 433

Query: 46  DRT--------EQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKT---LGIDIPSKRW 93
           + T        ++  +   L ++L   +    V  N+ F+    K+    L        +
Sbjct: 434 ELTGITNEMVMDKPKIDEVLPKFLEFSKDSYFVGQNTDFDIGFIKEACDNLSYKFEPI-Y 492

Query: 94  ICTSVLARTNGLPS---SLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPP 144
           + T  +AR         SL      L              M   K  I  F K    +  
Sbjct: 493 LDTLPMARAVFPTMGRFSLDKLAKKLGVGPFNHHRASDDAMTTAKIFIKLFEKIKDKNKD 552

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
               + N ++       +         + +  L  L  
Sbjct: 553 LSLEKINSIKTKWPLARHENFSSIIFAKNYHGLKNLYK 590


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|307153762|ref|YP_003889146.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306983990|gb|ADN15871.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 817

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
           + + ID E      L +  +     +  +   A++  ++P     R +   +   L  + 
Sbjct: 6   NFIVIDTE--GRDQLRE--IAIINAEGELIYEAFS-QEDPNYYGRRLKSKPLVDILADFQ 60

Query: 61  -LRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTS-VL--ARTNGLPSSLKNAC 113
            +  E V+ + HN+  +  + K +     ID  +  + C+  +   +  N    SL+   
Sbjct: 61  KIASEKVI-ICHNANHDIQVLKNSFKKVSIDWQNLNFQCSLELAKNSFPNLPSYSLEYLS 119

Query: 114 LALNFS 119
             L   
Sbjct: 120 KQLGLK 125


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 40/151 (26%)

Query: 1   MSKLFIDIETRSPQP-----LPKVG-------------VWAY--------AEQAVITLCA 34
           M ++  D ET    P     + ++G               AY             +   +
Sbjct: 1   MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPERDMPPAAEEVHGLS 60

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPS 90
            A+  +     D          LL++L D     VAHN+ F+       L +     I  
Sbjct: 61  AAFLSDKPLFRDTA------DALLEFLGDA--PLVAHNAGFDFGFLNTELELIEREAISL 112

Query: 91  KRWICTSVLAR--TNGLPSSLKNACLALNFS 119
            R + T  +AR    G   SL   C      
Sbjct: 113 DRMVDTVQIARKKHPGAKVSLDALCSRYGVD 143


>gi|327284750|ref|XP_003227099.1| PREDICTED: DNA polymerase subunit gamma-1-like [Anolis carolinensis]
          Length = 1165

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 81/289 (28%), Gaps = 33/289 (11%)

Query: 358  GLASDCVRSCIIASNGKKLVVADLAGIEARVL-----AWIAGEDWKIKAFANGEDIYVTT 412
                  +++ + A  G  LV AD+   E  +      A  AG                ++
Sbjct: 798  DRVGSELKAMVQAPPGYHLVGADVDSQELWIAAVLGEAHFAGLHGCTAFGWMTLQGKKSS 857

Query: 413  YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
                 +     V    R   KV      Y  G    + +       L +   + K+   +
Sbjct: 858  GTDLHSKTASTV-GISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTEQQASEKARQMY 916

Query: 473  EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532
               +        + ++      +  +     E          Q V ++ +++        
Sbjct: 917  AATKGIRR--CHLSEEGEWLVKELGIPVDRAE----NGSVSLQDVRKIHREV-------- 962

Query: 533  QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592
                S   +      R+     + ++   L S   +  SD           +  L     
Sbjct: 963  -GKRSQKKKWDVVRQRVWSNGTESEMFNKLES---IAMSDSPCTPVLGCRISRALEPAAV 1018

Query: 593  YGGKL---TENIVQAISRD---ILCEGMKNATKN---GYDIVLTVHDEI 632
             G  +      +VQ+ + D   ++   MK   +         +++HDE+
Sbjct: 1019 KGEFVTSRVNWVVQSSAVDYLHLMLVAMKWLFEEYSIDGRFCISIHDEV 1067


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 34/148 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL----------CAYAWDDEPVKL------ 44
           + ++ +D ET        V      E A I L           +Y ++ +PVK+      
Sbjct: 6   IREIILDTETTGL----SVKTDRLIELAAIKLEDGRRTPHTYHSY-FNPQPVKVSRSAFN 60

Query: 45  WDRTEQSAMPSD------LLQYLRD-ETVMCVAHNSLFERILFKKTLGI----DIPSKRW 93
                   +           ++L        +AHN+ F+  +  + L +     I +  W
Sbjct: 61  VHGISNEFLSDKPAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAGCW 120

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
             +  +A+       +S+   C   N  
Sbjct: 121 RDSLSIAKQLFPNRSNSMAALCKRFNLE 148


>gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 36/123 (29%)

Query: 3   KLFIDIETRS----------------PQPLPKVGVWAYAEQ------AVITLCAYAWDDE 40
            +F+D ET                     L KV    Y         A +        DE
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDEDLNLKKVFNQYYLVDHMSRSAAKVHGLTMDILDE 61

Query: 41  PVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWI 94
                  +          ++   L D  +  + HN  F+    K      G +   K   
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDSVI--IGHNISFDIRFLKAEFERLGPEYIPKDKF 113

Query: 95  CTS 97
           CT 
Sbjct: 114 CTM 116


>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
 gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
 gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 37  WDDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLG 85
            D  P  +   T +          + +DL + LR      VAHN  F+        + +G
Sbjct: 60  VDPGPTHVHGLTAEMLEGAPRFGDVVADLAELLR--GRTLVAHNVGFDYSFLTAEAELVG 117

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHL 122
            ++P    +CT  LAR   L      L+         +  
Sbjct: 118 AELPIDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLK 157


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 40/155 (25%)

Query: 2   SKLFIDIETRSPQ------------------PLPKVGVWAYA--------EQAVITLCAY 35
            ++ +D ET                       +    +  Y         E A +     
Sbjct: 4   RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPERDMPEEAAKVHGLTI 63

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDIP 89
              +E            +   +           + HN+ F+        + +G   I+  
Sbjct: 64  EVLEEKNAPPFAEVGRQIADFIRDA------ELIIHNAKFDIGFLNMEFRRMGLPSIEEL 117

Query: 90  SKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
                 T  +AR    G  +SL   C  L+     
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRLSVDRSK 152


>gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays]
 gi|194702850|gb|ACF85509.1| unknown [Zea mays]
          Length = 339

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 4/80 (5%)

Query: 25  AEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
                + +   A+ D  V L D       +       L  + +  V H+   +       
Sbjct: 63  CRNGALCIMQLAFPD-AVYLVDAIEGGKELIQACKPALESDHITKVIHDCKRDSEALYFQ 121

Query: 84  LGIDIPSKRWICTSVLARTN 103
            GI +     + T +     
Sbjct: 122 FGIKLH--NVMDTQIAYSLI 139


>gi|156093870|ref|XP_001612973.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801847|gb|EDL43246.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 428

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 42/165 (25%), Gaps = 16/165 (9%)

Query: 22  WAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLLQYLRDETVMCVAHNSLFERI 78
           +       +++      D  V L+D             L + L D  V+ + H+   +  
Sbjct: 107 YKIGRNGTVSIIQVCTQD--VYLFDLYKCDNSYLFVKCLKELLEDRRVIKITHDCREDCS 164

Query: 79  LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK--ALIARFC 136
           +        I   R   T V          LK     L   +        K   L  +  
Sbjct: 165 ILFNQ--YSICLNRTFDTQVA-----FNLLLKETKKDLY--QISYDDLLYKCLLLNNKHK 215

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    D          +   +Y  +DV   + L   L+   
Sbjct: 216 IYFHKMISLDQKIYLKRPIAKELIQYAIQDVIYLKPLMWSLVDRL 260


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++   E  + VAHN+ F+      +    GI   +   I T  L+R      
Sbjct: 492 EEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHF 549

Query: 107 --SSLKNACLALNFS 119
               L         +
Sbjct: 550 KSHRLNTLSKKFGVN 564


>gi|327279914|ref|XP_003224700.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Anolis
           carolinensis]
          Length = 1327

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 68/211 (32%), Gaps = 24/211 (11%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +    V+   ++  + L      +E   L+  +  S  P  L + L D  +  +     
Sbjct: 76  DIEWTPVFTKGKEGKVALIQLCESEEKCYLFHISSMSNFPGGLKRLLEDNHIKKIGVGIE 135

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTKMEEGKALIA 133
            ++    +    ++     +              L +     L   E  +  +  K L  
Sbjct: 136 GDKWKLMR--DFEVNLGDLVD-------------LADLANKKLRCKEIWSLNDLVKHL-- 178

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
            F K  +      C         +    Y   D  A   ++K+L+ +S  ++    L  +
Sbjct: 179 -FHKQLLKEKLVRCGNWEEFPLTEEQKLYAATDAYAGFLIYKKLMTMSSDKK----LQIS 233

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
           I   G  +  ++  +L   +++E   L + +
Sbjct: 234 IEKDGILLSSEIKKEL-ATMSEEMIDLTDHL 263


>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
           [Lactococcus lactis subsp. lactis KF147]
          Length = 794

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +   + + L D   + VAHN+ F+  L +K+    G++      + T  LAR       
Sbjct: 74  EVAGKVRELLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 131

Query: 107 -SSLKNACLALNFSEHL 122
              L++    L+ +   
Sbjct: 132 KYGLESLSEKLDLAHDH 148


>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
          Length = 376

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 25/197 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E      + +   +       + L   A   E V +   +      +DL +   D
Sbjct: 22  LAIDTE-----FMREKTFY-----PKLCLIQLATRSEIVLVDPLSIPD--LTDLCKLFLD 69

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSL-KNACLALN 117
           + +  + H    +  L           K    T V A   G         L    C    
Sbjct: 70  KKITKIFHACSQDLELI--YDIFSCLPKPVFDTQVAAAFLGHRFQIGYGPLVDALCHVHL 127

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKRDVEATREL 173
                      + L     + + D   Y     + +       + +  + +   E   E 
Sbjct: 128 PKAESLTDWTRRPLAEEQLEYAADDVRYLPRMYDTLLHELKEKERYAWFLEEMHEVCNE- 186

Query: 174 FKRLIPLSDGERDLWLL 190
              +    +    +  +
Sbjct: 187 HHVIKKPQEAYLHMRRI 203


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVI-----------TLCAYAWDD----EPVKL 44
            +  DIET    P+    +   A       I               +  +         +
Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDRMDEFVNPEVPIPFDIERLTGINDAMV 474

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                   +    L+++ D     VAHN+ F+          LG+       + T  LAR
Sbjct: 475 MGADTVDKVLPRFLEFVGDAA--LVAHNASFDVSFISHNAGLLGLSFDPT-VLDTVTLAR 531

Query: 102 TNGLPSS---LKNACLALNFS 119
                 +   L     AL  S
Sbjct: 532 ALLPNLNRFKLDTVAKALGVS 552


>gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
 gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
          Length = 483

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 32/146 (21%)

Query: 2   SKLFIDIET---RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------- 50
             +  D+ET    S   + ++G     +     +   ++     ++   +EQ        
Sbjct: 300 RVICFDLETSGVTSSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTSLQ 359

Query: 51  -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW-ICTS-- 97
                    + +  + ++ +     VAHN  F++ +  +      I         CT   
Sbjct: 360 LMSAPPIEIILASFMDWVGNS--PLVAHNLAFDKRILIQELIRYNIPFNIDHICFCTMKY 417

Query: 98  ---VLARTNGLPSSLKNACLALNFSE 120
              +    NGL  SL +    L  ++
Sbjct: 418 FKKI---YNGLNYSLDSISQKLKINK 440


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
          Length = 1474

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 31/143 (21%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVIT-----------LCAY------AWDDE 40
             +  D+ET         + ++G     E   I               +      + +DE
Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVK-VENGKIIDRFSTFVNPEIPIPFRIEKLTSINDE 466

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK-RWICTSV 98
            V   D  +   +    +++ +D   + VAHNS F+           D+      I T  
Sbjct: 467 MV--IDAPKIEEILPQFMEFCKDS--VMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVA 522

Query: 99  LARTNGLP---SSLKNACLALNF 118
           ++R   +      L N   AL  
Sbjct: 523 MSRYLIIGLGRYKLDNVAKALGI 545


>gi|262342235|gb|ACY54628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAG+E R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGVELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 63/236 (26%), Gaps = 43/236 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSD 56
           ++ +D E     T                   + L    +D E + L D  T     P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113
               LRDE V    H    +  +F    G       +I T +LA   G P S        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNAFG--TLPVPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSI-DSPPYDCTRANHVQAWQLFGEYCKRDVEA--- 169
             +  +   ++            +        Y      ++    +       D EA   
Sbjct: 124 DYMGVTLDKSESRT-----DWLARPLSEKQCDYAAADVFYLLPMAI---QLVADTEAAGW 175

Query: 170 -TRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKLDED 223
               L + L+     +  L            +++    +  LQ L     +K  E 
Sbjct: 176 MNAALDECLLLCQRKQDILAPALAYREFGNAWQLRGRHLACLQRLAEWRLRKARER 231


>gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 41/147 (27%)

Query: 1   MSKLFIDIET-----RSPQPLP-----------------KVGVWAYAEQAVITLCAYAWD 38
           M+ + +D ET      S   +                  K   +  +  + I        
Sbjct: 1   MNFVAMDFETANGQRDSACSIALVVVRNDQIVDQFYTLIKPETYFSSRNSQIHGI----- 55

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILFK---KTLGIDIPSKR 92
                  D  +       +  ++        + VAHN+ F+  + +   +   I  P   
Sbjct: 56  ----YEDDVAQAPKF-DQVWPHIAPFFTPQKLVVAHNATFDIGVLRSTLQHYDIPEPHYL 110

Query: 93  WICTSVLARTNGL---PSSLKNACLAL 116
            + T   +R          L   C  L
Sbjct: 111 ALDTLTTSRRLYPQFKNHKLNTLCTNL 137


>gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 22/140 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAY----AEQAVIT---------LCAYA--WDDEPVKLWDRT 48
           + +D ET    P              E   +              +   +       +  
Sbjct: 16  IVLDFETTGLSPTQGDRAIEIGAVLMENGEVVDRFQKLMNPGFRVSSFIESYTGITNNML 75

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTN- 103
             +A   +++    D       VAHN+ F++      L I        + C+ ++AR   
Sbjct: 76  RTAAPCDEVMDQFTDFIGDYNLVAHNASFDKRFLDAELDIINRSYGGEFACSMLIARRLY 135

Query: 104 --GLPSSLKNACLALNFSEH 121
                  L +     N    
Sbjct: 136 QNAPNHKLGSLVAYKNIDHD 155


>gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 321

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 17/110 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWA------------YAEQAVITLC----AYAWDDEPVKLWDR 47
           L ID ET    P     +               A+ + +       A + +  P ++   
Sbjct: 92  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETNAAESINRIPAEVTRL 151

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            +      D  Q L D   + VAHN+ F+R  F K   +   SK W+CT 
Sbjct: 152 DQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQ-LPAVSKPWLCTM 200


>gi|66732780|gb|AAY53371.1| gp68 [Listeria phage P100]
          Length = 278

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 17/79 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------AMP 54
           +  D+ET +  P   +G           + + +W +          +           + 
Sbjct: 208 IAWDLETNTLLP-EMLGAKP-------LVMSVSWKEGQGVTIPLEHRESHWEAYELEEIY 259

Query: 55  SDLLQYLRDETVMCVAHNS 73
           + + +++ D+ ++ V HN 
Sbjct: 260 NYIKEFVADKNIVKVGHNI 278


>gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 59/233 (25%), Gaps = 49/233 (21%)

Query: 2   SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAY-------------AWDDEPVK 43
             + +D ET      S   +    +   A    I    +             + +   +K
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGA--VEIIDRCFTGNNFHVYIQPGRSIESGALK 62

Query: 44  LWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI---DIPSKRW- 93
           +   T        +  D+     +  +  + V HN+ F+     + L I    I    + 
Sbjct: 63  VHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFC 122

Query: 94  --ICTSVLARTNGLPSS--LKNACLALN--------FSEHLTKMEEGKALIARFCKGSID 141
             + T  +AR         L   C             S  +     GK            
Sbjct: 123 SIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGK---LYLLMTGGQ 179

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +     N+ + ++   +   +    T  +   L P            Q +
Sbjct: 180 DSLFSDNTINYKENFKKLKK-NIQLKNNTLRI---LHPTLKENDLHEKYLQYM 228


>gi|229472205|gb|ACQ72617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYAGILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
              DK+    R + K +  A  Y  G +    +          +        +  E  + 
Sbjct: 61  VNADKI-GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
            +     ++    E      L G  
Sbjct: 120 LDKLLEAIKK-ASERGFIKALDGRK 143


>gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 39/152 (25%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSD 56
           M  +  +D ET    P          E AVI L      D  +             +PSD
Sbjct: 1   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-----RDGEIVDRYQSLMNAGRRIPSD 52

Query: 57  LLQY--LRDE--------------------TVMCVAHNSLFERILFKKTLGI--DIPSKR 92
           ++    + +E                        VAHN+ F++  ++  LG+        
Sbjct: 53  VVALTGITNEMIASAPPVSQVMKEAAAFVGNHPVVAHNAGFDKRFWQAELGMLGMAAEHA 112

Query: 93  WICTSVLA---RTNGLPSSLKNACLALNFSEH 121
           + CT ++A     +     L +    L   + 
Sbjct: 113 FACTMLVARRIYPHARSHRLSSLADMLRLPQT 144


>gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 14/93 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E      + +  ++       + L    +D E + L D   + ++     Q L+D
Sbjct: 25  LAIDTE-----FMRRRTLY-----PEVALIQV-YDGEHLALIDPLAELSLFD-FWQILKD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
             V+ V H+   +  +F+K  G          T
Sbjct: 73  PAVLKVFHSPSEDIEVFQKYAGFV--PTPLFDT 103


>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 383

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D  + L D   Q          + D+ V+ V H +  +  +    LG  
Sbjct: 37  PQLCLIQVASPDITI-LIDPMAQDINLQPFFDLMIDKKVVKVFHAARQDIEII-YHLG-G 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V     G                           I + C G         
Sbjct: 94  IIPSPLFDTQVAGSICGFG------------------DSISYDQIVQRCTGHHLDKSSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           T  +     +    Y   DV   R+++  L    + ++    +   +
Sbjct: 136 TDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEM 182


>gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 23/144 (15%)

Query: 1   MSKLF-IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----- 50
           M  +  ID ET                       I+    +  +    +    E      
Sbjct: 1   METVAVIDFETTGMSPELGDRATEVAVVIVSDGKISSRYQSLMNTGAYIPPFIEDLTGIS 60

Query: 51  -SAM-----PSDLLQYLRD--ETVMCVAHNSLFERILF--KKTLGIDIPSKRWICTSVLA 100
              +      + +++ L D       VAHN+ F+      + +       + + C+ +LA
Sbjct: 61  NEMIRQAPPAAQVMKELADFVGAAPWVAHNASFDSRFLDAEWSRMGHRREQAFACSMLLA 120

Query: 101 RTN---GLPSSLKNACLALNFSEH 121
           R          L      L   + 
Sbjct: 121 RRLYPDSPNHKLGTLVRFLGLPDT 144


>gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 37/131 (28%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDE-------------PVKLWD-- 46
            LF D ET       +  V        +   AY ++D E                +    
Sbjct: 2   YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSS 61

Query: 47  ------------RTEQSAMPSDLL---QYLRDETVMCVAHNSLFERIL----FKKT-LGI 86
                         E   +   L    + + D  V+ VAHN  F+  +      +  +  
Sbjct: 62  AVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVL-VAHNISFDEKIVGSELIRAGMPN 120

Query: 87  DIPSKRWICTS 97
            +PSKR ICT 
Sbjct: 121 SLPSKRKICTM 131


>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 13/102 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S +    +            L   + D     + D  +       L +   D
Sbjct: 62  IGVDLEHHSDRSYRGIT----------CLMQISTDKTD-YIIDTLKLWDHLQPLNKVFCD 110

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
             ++ +   +  + I  ++  GI +       T   A   G 
Sbjct: 111 PNIVKIFQGADSDVIWLQRDFGIYV--VNLFDTFQAASLLGF 150


>gi|300870683|ref|YP_003785554.1| exonuclease [Brachyspira pilosicoli 95/1000]
 gi|300688382|gb|ADK31053.1| exonuclease [Brachyspira pilosicoli 95/1000]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 52/187 (27%), Gaps = 28/187 (14%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +F+DIET   +P              +  C   +D + ++++   +      D L Y+
Sbjct: 98  KTVFLDIETTGMKPAKSYVT--------VIGC---YDGKDMQVFVHGKNER---DFLDYI 143

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           ++ +++   + S F+    ++     I   +            L   LK+        + 
Sbjct: 144 KNYSIVVTFNGSCFDIPFLERYFNTKIKCAQI----------DLRFVLKDLGYTGGLKKI 193

Query: 122 LTKMEEGKALIARFCKGSIDSP--PYDCTRANHVQAWQLFGEYCKRD-VEATRELFKRLI 178
             K                 +              A      Y   D ++    L     
Sbjct: 194 -EKDVGIDRGDDMLGVNGYTAVLLWNYYLDTKDETAIDSLIHYNLLDTIDLEYLLCLAYN 252

Query: 179 PLSDGER 185
             ++  +
Sbjct: 253 KYAEKYK 259


>gi|291227793|ref|XP_002733868.1| PREDICTED: DNA-directed DNA polymerase gamma-like [Saccoglossus
            kowalevskii]
          Length = 1315

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/322 (10%), Positives = 86/322 (26%), Gaps = 29/322 (9%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+   +  +  + ++      + A P       +++ + A  G   V AD+   E  + 
Sbjct: 902  LPKVVTAGTVTRRMVEPTWLTASNARP-DRVGSELKAMVQAPPGYHFVGADVDSQELWIA 960

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ----RAIGKVMELALGYQGGA 445
            + +    +                 K   T +   + +     R   KV      Y  G 
Sbjct: 961  SLLGDARFAGFHGCTAFGWMNLQGNKLERTDLHSKTADTIDISRDQAKVFNYGRIYGAGQ 1020

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
                 +       +       K+++ +   +  + +               +++      
Sbjct: 1021 PFAVRLLMQFNHRMSVDEARRKASTMYSATKGIKKY--------KLKEDVREIVRKLLSK 1072

Query: 506  VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565
             K++    ++ +  L + L         E    +      +        KR+  +   S 
Sbjct: 1073 KKQSRWITNEELRTLRRRLKYTLEYQYVEDIESNIPLTDLLDYSFDLTEKREWKVGSESE 1132

Query: 566  RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN---------IVQAISRD------IL 610
                   +        T        R        N         +VQ+ + D      + 
Sbjct: 1133 MFNQLESIAMSDEP-RTPVLGCRISRALEPMSVNNEFLTSRINWVVQSSAVDYLHLMLVC 1191

Query: 611  CEGMKNATKNGYDIVLTVHDEI 632
               + +         +++HDE+
Sbjct: 1192 MRWLLDKYDIDGRFSISIHDEV 1213


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 24/140 (17%)

Query: 5   FIDIET--RSPQPLPKVGVWAYAEQAVITLCAYAWDDE--------------PVKLWDRT 48
           F+D+ET       +  +GV       V+T   +  D E              P  + D+ 
Sbjct: 7   FVDVETPNYQNNSISSIGVINVDGDGVVTTKYFLVDPEAHFDRFNIELTGITPEMVADQP 66

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN-- 103
               + S++  Y  +   + VAHN++F+  +         + I    + CT  ++R    
Sbjct: 67  NFKEVWSEIEPYFTNS--LVVAHNAVFDLGVISACLQRYDLPIFPIFYTCTYRISRALKI 124

Query: 104 -GLPSSLKNACLALNFSEHL 122
                 L +     + +   
Sbjct: 125 PSNSYKLNDLSSYYHVTLDN 144


>gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2]
 gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2]
          Length = 385

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 43/200 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMP 54
            + +D E     T                   + L   A+ D+      L D        
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAYQDDSGADAVLLDPLVDGLSL 66

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114
             L    +D  V+ V H +  +  +F   +   +  +    T V A   G          
Sbjct: 67  EPLYDLFKDHGVVKVFHAARQDLEIF--YVDAGVIPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            + +            L+ +  K  +D        +           Y   DV   R+++
Sbjct: 118 QVGYET----------LVRKITKSDLDKSSRFTDWSRRPLTDAQAK-YALADVTHLRDIY 166

Query: 175 KRLIPLSDGERDLWLLDQTI 194
           + L            + + +
Sbjct: 167 EHLSARLAKSGRSKWVAEEM 186


>gi|11466089|ref|NP_049544.1| DNA polymerase [Neurospora intermedia]
 gi|4877819|gb|AAD31446.1| DNA polymerase [Neurospora intermedia]
          Length = 1035

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 57/227 (25%), Gaps = 61/227 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---WDDEP--VKLWD--RTEQSAMP 54
             L  DIET                    T+ AYA   +D             +++  + 
Sbjct: 313 KILAFDIETFQVP----------TGNGDSTMIAYACGFYDGNKSLTYYISDFISQREMLL 362

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWI----CTS------------ 97
           + +   L+ +      HN S F+     K L  +   ++ I                   
Sbjct: 363 ACIKDMLKYDKHTVYCHNFSKFDINFIIKILVQEFVVEKIISKDLDILSIKISYKFEPKK 422

Query: 98  -----------VLARTNGLPSSLKNACLALNFSEHLTKME---EGKALIARFCKGSIDSP 143
                      +      LP SL       N      K       K  +           
Sbjct: 423 KGGKAERHTITIADSCRLLPGSLDKLAKDHNIITKKGKFPYKFVNKDNLEYVGLIPDYEY 482

Query: 144 PYDCTR----------ANHVQAWQLFGE---YCKRDVEATRELFKRL 177
             D  +          A +   W    E   Y ++D++A  +L   +
Sbjct: 483 YIDPKKGEMITLFEWAAMYTNKWSTRKETIIYLEKDIKALYQLMMEM 529


>gi|66394968|ref|YP_240955.1| ORF019 [Staphylococcus phage G1]
 gi|62636990|gb|AAX92101.1| ORF019 [Staphylococcus phage G1]
          Length = 447

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 61/296 (20%), Gaps = 84/296 (28%)

Query: 114 LALNFSE--HLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             +  S+      +     LI        + +              +L   Y   D +  
Sbjct: 152 EYMGLSDYAKSYTLNTAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDVC 211

Query: 171 RELFKRLIPLSDGE-------------RDLWLLDQTINDRGYRIDLDLVLK--------- 208
           R ++  +I     +               L      I   G   DLD + +         
Sbjct: 212 RRIYCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESEM 271

Query: 209 -----------LQELIAQERKKLDEDIVKLTDGI--------------------IRSSRQ 237
                        +   + +  L +  ++  +                      + S   
Sbjct: 272 AKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPSS 331

Query: 238 TYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSNITQ 272
                  ++ I GI L                             +  +   L +  +  
Sbjct: 332 GDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELKD 391

Query: 273 LAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
             K+L+      +            L   ++   R          + T R S    
Sbjct: 392 DVKELLELLKYHASIQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNP 447


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +     TL     D  PV +   T         
Sbjct: 23  VDVETTGLARDDRIVSAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVLAGAPL 82

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLP 106
              +  +  Q L  +  + VAHN++F+  +  +       +       CT  LA+   LP
Sbjct: 83  FQDIADEFSQRL--DGRVLVAHNAMFDWSMIAREYARARRTAPTRQRLCTIALAKELRLP 140

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 141 LPNHKLESLAAHFGV 155


>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
 gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
          Length = 399

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 48/187 (25%), Gaps = 27/187 (14%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
               +   + Y+ +A +       +     L D      MP+ L   L       V H +
Sbjct: 44  VDAERASSYRYSSRAYLV--QLRTEAAGTALIDPLAF-TMPATLRSLLA--EREWVLHAA 98

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133
             +     +   I +       T + AR  G+          +       +   G  L  
Sbjct: 99  GQDLPSLAE---IGLEPGGLFDTELAARLLGM--------ERVGLGAV-VEDTLGLRL-- 144

Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193
                + +    D +R    + W     Y   DVE   E+   L              Q 
Sbjct: 145 -----AKEHSAADWSRRPLPEGWLT---YAALDVEVLVEVRDVLRERLREACKEDWARQE 196

Query: 194 INDRGYR 200
                 R
Sbjct: 197 FEHERVR 203


>gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
 gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L ID E      + +  ++       + L    +D E + L D   + ++     Q L+
Sbjct: 24  ILAIDTE-----FMRRRTLY-----PEVALIQV-FDGEHLALIDPLAELSLFD-FWQVLK 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
           D  V+ V H+   +  +F+K  G          T    +  G  
Sbjct: 72  DPAVLKVLHSPSEDIEVFQKYAGFV--PAPLFDTQFALQLLGEG 113


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 55  SDLLQYLR-DETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---P 106
             L  +L   +  + VAHN+ F+         +  GI   +   I T  LAR        
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARY-GIPEAANPVIDTLELARYLYPQFKR 550

Query: 107 SSLKNACLALNFS 119
             L         S
Sbjct: 551 FGLGVLSKKFGVS 563


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 25/126 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDE--------PVKLW---- 45
             +  D+ET    P+    +   A   E   I    +Y  + E         V       
Sbjct: 27  RYIAFDVETTGLSPINDKIIEVGAVLFENGEIIKKYSYLVNLEVVIPASATAVNHITNEM 86

Query: 46  --DRTEQSAMPSDLLQYLRD---ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
             D T++  + ++L+++L D   E  +  AHN+ F+          LG D     ++ T 
Sbjct: 87  IQDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDGKIH-YVDTL 145

Query: 98  VLARTN 103
            L+R  
Sbjct: 146 SLSRNL 151


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 39/151 (25%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           + ++ +D ET               E   I L                       A A  
Sbjct: 2   LREIVLDTETTG----TDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVH 57

Query: 39  D-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGID------IPS 90
                 L D+   +A+    L +  D     V HN+ F+      +   +       I  
Sbjct: 58  GLADAFLADKPPFAAILPAFLDFCGDA--TFVIHNAAFDVGFLNAEYARLGDAAPPAIDL 115

Query: 91  KRWICTSVLARTNGLPS--SLKNACLALNFS 119
              + T  LAR     +  +L   C      
Sbjct: 116 AGVVDTLALARRKHPNAANNLDALCARYGID 146


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 29/143 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51
           S +  DIET     +    +   A    I  C    D     +  +   S          
Sbjct: 398 SFVVFDIETTGLSSINDSIIEIGA--VKIKDCQI-VDTFETFVNPQIHISNFITKLTGIT 454

Query: 52  --------AMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
                    +   L ++L   +    VAHN+ F+    K   K LGI++     + T  L
Sbjct: 455 DDMVKRYPPIDEVLPKFLEFIKGSTLVAHNANFDVTFIKTKAKNLGIEVD-NPVLDTLEL 513

Query: 100 ARTN---GLPSSLKNACLALNFS 119
           +R          L      L  S
Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVS 536


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 38/144 (26%), Gaps = 36/144 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY---- 60
           F+D+ET         G  A      I +     +           Q  +P  + Q     
Sbjct: 17  FVDLETTG-------GSAAEHRITEIGVVVVNANGTSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 61  ---------LRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
                      D         +  + VAHN+ F+R   +      GI       +CT  L
Sbjct: 70  DAMVRGAPTFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRL 128

Query: 100 ARTN---GLPSSLKNACLALNFSE 120
           +R          L         + 
Sbjct: 129 SRALFPRESRHGLDALIERHALAP 152


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 38/144 (26%), Gaps = 36/144 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY---- 60
           F+D+ET         G  A      I +     +           Q  +P  + Q     
Sbjct: 17  FVDLETTG-------GSAAEHRITEIGVVVVNANGTSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 61  ---------LRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
                      D         +  + VAHN+ F+R   +      GI       +CT  L
Sbjct: 70  DAMVRGAPTFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRL 128

Query: 100 ARTN---GLPSSLKNACLALNFSE 120
           +R          L         + 
Sbjct: 129 SRALFPRESRHGLDALIERHALAP 152


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLP 106
           + ++L   L     + +AHN+ F+R   +      G         CT  L+R        
Sbjct: 82  IAAELFARLE--GRLFIAHNASFDRGFLRAEFERAGFAFNPDML-CTVRLSRALFPRESR 138

Query: 107 SSLKNACLALNF 118
             L         
Sbjct: 139 HGLDALIERHAL 150


>gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 26/136 (19%)

Query: 4   LFIDIETRSPQPL---PKVGVWAYAEQAVIT----------LCAYA--WDDEPVK----L 44
           + +D ET    P      + + A   Q  I               +   +         L
Sbjct: 10  IILDFETTGLSPNQGDRAIEIGAVRIQDGIVVDTFQELMNPGFRVSGFIEGYTGISNAML 69

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIP-SKRWICTSVLART 102
            +      + +    ++ D     VAHN+ F++      L GI++    ++ C+ ++AR 
Sbjct: 70  ANAAPCEEVMARFADFIGDHN--LVAHNASFDQRFLDAELDGINLSYGGKFACSMLIARR 127

Query: 103 N---GLPSSLKNACLA 115
                    L      
Sbjct: 128 LYQDAPNHKLGGLVEY 143


>gi|262342149|gb|ACY54585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 8/131 (6%)

Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421
              R   I +   KLV +DLAGIE R+ A        +  +  G    +           
Sbjct: 10  KDCRELFITNPTWKLVDSDLAGIELRLFAHY------LARYDGGRYAKILLEQDIHQVNA 63

Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480
           +K+    R   K +     Y GG +    +  +   LD  +        +  +     E 
Sbjct: 64  EKI-GISRRQVKTITYCFLYGGGDQKLGLSFDNMLPLDKAKKKGAEIRRAYMDAIPGLED 122

Query: 481 HHLWMQDQYPE 491
                +     
Sbjct: 123 LVKDTRRVAER 133


>gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
 gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 25/116 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVIT----LCAYAW----DDEPVKLWD------- 46
             L +D ET S  P     +   A    +     L   A+    ++ P    +       
Sbjct: 77  KLLILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPCENNPSYSLNGISAETT 136

Query: 47  --RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTS 97
                  A  S  L  +     + VAHN+ F+R  F    GID   I +K W+C+ 
Sbjct: 137 RLIYPWEAGLSYFLTLVESSD-LIVAHNASFDRQWF----GIDPLPIINKPWLCSM 187


>gi|146423193|ref|XP_001487528.1| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 54/217 (24%), Gaps = 21/217 (9%)

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            + G A  + T+           S+  +      +  +  ++                  
Sbjct: 710 IHGGTALGWMTLEGDKNEGTDLHSKTAEILGILRNDAKVFNYGRIYGAGVK--------- 760

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                 + K + ++      L            Q G S    R                 
Sbjct: 761 --FATTLLKQFNSELTDAAALKVAQDLYARTKGQTGKSKFLDRPMYHGGTESVMFNALEA 818

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM-- 614
           I      R          +  +  + + + +  Y        +Q+   D   +L   M  
Sbjct: 819 IAYQDDPR----TPVLGAAITDALSKKNLNKNNYMTSRINWAIQSSGVDYLHLLLISMEY 874

Query: 615 -KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                +    ++LTVHDEI     +   + +  L  +
Sbjct: 875 LIARYQVDARLILTVHDEIRYMVKEDQKYKLALLLQV 911


>gi|121711303|ref|XP_001273267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
 gi|119401418|gb|EAW11841.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
          Length = 391

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 50/197 (25%), Gaps = 25/197 (12%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             +  D+E     T+S      V +   A    I L   A            +     + 
Sbjct: 145 KVIGFDMEWKPQATKSAGIRSNVSLIQIANSERIALFQIAL------FKPAKKAEDFVAA 198

Query: 57  -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L + L    +M V      +    +K LGID        T  L+    L    ++    
Sbjct: 199 SLRKILESPEIMKVGVTIKADCTRLRKYLGIDTRG-----TLELSHLYKLVKYSESNPKL 253

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +N        +        F           C+       ++    Y   D  A   LF 
Sbjct: 254 INKRPVSLSDQV----EEHFGMPLEKDGNVRCSNWATALNYRQVQ-YAATDPYACFRLFD 308

Query: 176 RL---IPLSDGERDLWL 189
            +       D    L  
Sbjct: 309 TMNTKRKALDPMPPLPE 325


>gi|163937891|ref|YP_001642777.1| DNA polymerase I-like protein [Bacillus weihenstephanensis KBAB4]
 gi|163865746|gb|ABY46802.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Bacillus weihenstephanensis KBAB4]
          Length = 594

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 68/260 (26%), Gaps = 30/260 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAH--NSLFERILFKKTLGIDIPSKRWICTSVLART- 102
            +  +S +   +  YL ++      H  ++ ++  +  +  G  I    W  +       
Sbjct: 210 PQLTRSRVLDMITPYLSNKDHGKSFHMGSARYDLHI-AENDGYTIDGCVW-DSLDAMYIM 267

Query: 103 --NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
             +     LK             +                        R+       + G
Sbjct: 268 TEHLNSYGLKPLIQRYGQRYLGIE------------NEVYTFDDLFGKRSPAPFNTLIVG 315

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
            Y   DV    +L +           L      I+ +  ++D  +V     +   E  +L
Sbjct: 316 IYAIYDVYYGWKLTEWQFETMKKTDKLLDCYALIDSKLSQVDAYMVRSGFNVDLDEFAQL 375

Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGI--------DLVDMSEGTLKSILSHSNITQ 272
           +++     D  I +   TY +         +        D     +     I        
Sbjct: 376 EKEFTVKVDEAIDAVFSTYNIDDDFLRKMSLTLNGKKIQDWKSKQKT---RIEKKRTQML 432

Query: 273 LAKDLILNRLASSGSAILKL 292
            A+D++     +  +   K 
Sbjct: 433 RARDIVKECKDNGKTTTKKY 452


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 39/145 (26%), Gaps = 35/145 (24%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAE-----------QAVI-TLCAY----AWDDEPV 42
            +  DIET         + ++G     E              I          + DD  V
Sbjct: 492 TVVFDIETTGFHPQTDKIIEIGAVKLREGKICDRMDVFVNPEIPIPFRITQLTSIDDSMV 551

Query: 43  KLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS 97
                        +LL          + VAHN+ F+        + LG+       + T 
Sbjct: 552 I------GERTIEELLPEFLSFCGDAVIVAHNADFDTGFIRENARRLGLSYDPT-VVDTV 604

Query: 98  VLARTNGLPSS---LKNACLALNFS 119
            L+R      +   L      L  S
Sbjct: 605 GLSRLLLPKLNRFKLDTVAKELGIS 629


>gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
 gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 39/152 (25%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSD 56
           M  +  +D ET    P          E AVI L      D  +             +PSD
Sbjct: 1   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-----RDGEIVDRYQSLMNAGRRIPSD 52

Query: 57  LLQY--LRDE--------------------TVMCVAHNSLFERILFKKTLGI--DIPSKR 92
           ++    + +E                        VAHN+ F++  ++  LG+        
Sbjct: 53  VVALTGITNEMIASAPPVSQVMKEAAAFVGNHPVVAHNAGFDKRFWQAELGMLGMAAEHA 112

Query: 93  WICTSVLA---RTNGLPSSLKNACLALNFSEH 121
           + CT ++A     +     L +    L   + 
Sbjct: 113 FACTMLVARRIYPHARSHRLSSLADMLRLPQT 144


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKR 92
           +  D+ VK  D   +  + ++   +L DE  + VAHN+ F+     K+    G+   +  
Sbjct: 482 SITDDDVK--DAPFEEEVMTNFYNWL-DEDDILVAHNAKFDLGFLDKSFERLGLKNKNNA 538

Query: 93  WICTSVLARTNG---LPSSLKNACLALNFS 119
            I T  ++R          L N        
Sbjct: 539 SIDTLFISRAENKEAKRHGLSNLAKLYKVR 568


>gi|294827794|ref|NP_711304.2| putative exonuclease [Leptospira interrogans serovar Lai str.
           56601]
 gi|293385639|gb|AAN48322.2| predicted exonuclease [Leptospira interrogans serovar Lai str.
           56601]
          Length = 256

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 35/192 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGV----WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             L++DIET       +  V      Y  ++ I                         +L
Sbjct: 84  KLLYMDIETTGLGNDDRTTVIGTFDGYEYRSYIRGF---------------NLDFFLENL 128

Query: 58  LQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
                 +  + V++N   F+    ++   +   +          R+ G+   LK     L
Sbjct: 129 -----SQDQIFVSYNGIAFDVPFLEREFNVRFRNNHI-DIMFFLRSLGIRGGLKGCEKTL 182

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 T    G             +        + + A ++  EY + D      LF +
Sbjct: 183 GVHRPETAAITG---------IEAVNLWKQYVDYDDMDALKILEEYNREDTVNLEILFIK 233

Query: 177 LIPLSDGERDLW 188
              L   E   +
Sbjct: 234 GYNLKIKETPFY 245


>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 584

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 26/137 (18%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRT------ 48
            + +D+ET         + ++G         +        +     P  +   T      
Sbjct: 33  FVVVDLETTGTRTTDSGITEIGAVKVRG-GEVLGEFQSLVNPGREVPAFVARLTGITTAM 91

Query: 49  --EQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
                ++   L  +L      + VAHN+ F+    K     LG   P    + T  LAR 
Sbjct: 92  VSTAPSIDLVLPSFLEWAHDCVLVAHNAPFDVGFLKAAAAGLGYPWPGFPVVDTVPLARR 151

Query: 103 N-----GLPSSLKNACL 114
                      L     
Sbjct: 152 VVPKDEAPNHKLATLAH 168


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 22/135 (16%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDD-----EPVKLW------DR 47
            +  D+ET         + + G        VI    +         E + L       D 
Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFFVKPNKEISEKITLITGIKNQDV 459

Query: 48  TEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
               +    L + L        VAHN+ F+        +       + + I T V+++  
Sbjct: 460 ENAISEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQIIDTLVVSKII 519

Query: 104 GLPS---SLKNACLA 115
              +   SL+N    
Sbjct: 520 EPEAKKFSLENLASR 534


>gi|45658398|ref|YP_002484.1| hypothetical protein LIC12557 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601641|gb|AAS71121.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 35/192 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGV----WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
             L++DIET       +  V      Y  ++ I                         +L
Sbjct: 83  KLLYMDIETTGLGNDDRTTVIGTFDGYEYRSYIRGF---------------NLDFFLENL 127

Query: 58  LQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
                 +  + V++N   F+    ++   +   +          R+ G+   LK     L
Sbjct: 128 -----SQDQIFVSYNGIAFDVPFLEREFNVRFRNNHI-DIMFFLRSLGIRGGLKGCEKTL 181

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                 T    G             +        + + A ++  EY + D      LF +
Sbjct: 182 GVHRPETAAITG---------IEAVNLWKQYVDYDDMDALKILEEYNREDTVNLEILFIK 232

Query: 177 LIPLSDGERDLW 188
              L   E   +
Sbjct: 233 GYNLKIKETPFY 244


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 26/140 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLW----------- 45
            +  DIET         + ++      E   I   A   +                    
Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGRYATFVNPHERIPYHIQQLTNINDDMV 480

Query: 46  -DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   +  + ++++ D   + VAHN+ F+    +   K  G+D     ++ T  LAR
Sbjct: 481 KDAPELEPVLKEFVEFVGDG--VLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELAR 538

Query: 102 TNGLP---SSLKNACLALNF 118
                     L         
Sbjct: 539 LVHPGLKNHRLNTLADKYKV 558


>gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM
           2075]
 gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM
           2075]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 45/154 (29%), Gaps = 37/154 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGV---WAYAEQAVITLCAYAWDD-----EPVKLWDRTEQSAM 53
           S + +D+ET     L + GV    A   +    L    +D+       V     T     
Sbjct: 46  SFVVLDLETTG-VDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPASSITIHGLT 104

Query: 54  PSDLL------QYLRD-----ETVMCVAHNSLFERILFKKTL----GIDIPSKRWICTSV 98
           P  L       Q   D        + VAHN+ F+     + +    G+ + +    CT  
Sbjct: 105 PQRLAAGRPLAQVFDDLAGFIGADIVVAHNAGFDLHFIDRHMRAHHGLALQNLAL-CTLR 163

Query: 99  LARTNGLPSS------------LKNACLALNFSE 120
           L R   LPS             L           
Sbjct: 164 LCRALLLPSDPFGVGRHKGQCRLDAIAERFGLDT 197


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  DIET         + ++G        ++   +   +      +  TE         
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLART 102
                  +++    D     + VAHN+ F+    K+     L ID+     I T  +AR 
Sbjct: 487 ANEPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQ-SSVIDTLQMARD 545

Query: 103 NGL---PSSLKNACLALNF 118
                    L +    L  
Sbjct: 546 LFPDLKKYGLGDLNKTLGL 564


>gi|146294019|ref|YP_001184443.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
 gi|145565709|gb|ABP76644.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 39/187 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +  D ETR+             +   ++L   A  D    L+     +     L   L
Sbjct: 114 RVIGFDTETRASF-------ERGVQHP-LSLIQIATHD-TCYLFQHALLAERLGLLKPVL 164

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            DE ++ V      +     +  GI++                           L+ +  
Sbjct: 165 EDENILKVGVGLRSDGQALTREWGINVTP------------------------RLDLNWV 200

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE------YCKRDVEATRELFK 175
           L ++  GK +  R    ++     D  +   +  WQ          Y   D  A +  F 
Sbjct: 201 LAQLGAGKEMGTRQLVATLLQKRIDKPKKVTLSNWQQVPLTSTQIVYAALDALAAQHCFS 260

Query: 176 RLIPLSD 182
            LI    
Sbjct: 261 ELIDKLK 267


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 45  WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
               +   +   +++  +D  + +    HN  F+        +   +DI ++  + T  +
Sbjct: 466 VQNADDENI---VIRQFQDFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 100 ARTNGL---PSSLKNACLALNF 118
           +R         +L +     N 
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNV 544


>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
 gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 40/155 (25%)

Query: 2   SKLFIDIETRSPQ------------------PLPKVGVWAYA--------EQAVITLCAY 35
            ++ +D ET                       +    +  Y         E A +     
Sbjct: 19  RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPERDMPEEAAKVHGLTI 78

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDIP 89
              +E            +   +           + HN+ F+        + +G   I+  
Sbjct: 79  EVLEEKNAPPFAEVGRQIADFIRDA------ELIIHNAKFDVGFLNMEFRRMGLPSIEEL 132

Query: 90  SKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
                 T  +AR    G  +SL   C  L+     
Sbjct: 133 GCTVTDTLAMAREMFPGQKASLDALCNRLSVDRSK 167


>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
 gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
          Length = 796

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 39/157 (24%), Gaps = 20/157 (12%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +L ID+E            +   +     L   +   +   + D          L +  
Sbjct: 281 KELAIDLE---------HHSYRTFQGFTC-LMQISTRTKD-YIIDTLALREELHVLNEVF 329

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-NFS 119
            D  V+ V H S+ +    ++   + +       T   A+        L+       N  
Sbjct: 330 TDTKVVKVLHGSISDIEWLQR--DLALYVVNMFDTGEAAKVLEFSRIGLQFLLKHYCNIE 387

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                      L     +    +      +  H   +
Sbjct: 388 TDKA-----YQLADWRIRPIPKNFIEYARKDTHYLLY 419


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 24/140 (17%)

Query: 5   FIDIET--RSPQPLPKVGVWAYAEQAVITLCAYAWDDE--------------PVKLWDRT 48
           F+D+ET       +  +GV       V+T   +  D E              P  + D+ 
Sbjct: 7   FVDVETPNYQNNSISSIGVINVDGDGVVTTKYFLVDPEAHFDRFNIELTGITPEMVADQP 66

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN-- 103
               + S++  Y  +   + VAHN++F+  +         + I    + CT  ++R    
Sbjct: 67  NFKEVWSEIEPYFTNS--LVVAHNAVFDLSVISACLQRYDLPIFPIFYTCTYRISRALKI 124

Query: 104 -GLPSSLKNACLALNFSEHL 122
                 L +     + +   
Sbjct: 125 PSNSYKLNDLSSYYHVTLDN 144


>gi|38233670|ref|NP_939437.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199931|emb|CAE49599.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 234

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 47/196 (23%), Gaps = 37/196 (18%)

Query: 4   LFIDIETRSPQP-----------------------LPKVGVWAYAEQAVITLCA--YAWD 38
           L  D+ET S  P                       L   GV      + +   +  YA +
Sbjct: 17  LSFDLETTSANPFEARIVTSALVRIDSSGAHPVELLADPGVEIPEAASKVHGISTEYARE 76

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
                            ++      E    V +N+ ++  + ++  G  +         +
Sbjct: 77  HGEPHEAVL---KRTVDEIYAAWE-EGFTLVVYNAPYDLTVLRQLTGDFVVKGPVYDPYL 132

Query: 99  LARTNGL----PSSLKNACLALNFSEHLTKMEEGKAL----IARFCKGSIDSPPYDCTRA 150
           + R          +L + C                AL    IA                 
Sbjct: 133 IDRIMDRFRKGKRTLTDLCSVYGVRMDNAHEATSDALAAARIAWMQAKKRFKDDLAAYSH 192

Query: 151 NHVQAWQLFGEYCKRD 166
           + +  +Q    Y  + 
Sbjct: 193 DELMEYQAVQYYELQK 208


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR--TNG 104
             +  +L +++ D+ +  +AHN+ F+R       ++   +  P  +WI T  LAR    G
Sbjct: 72  GQIADELCEFIGDKRI--IAHNAAFDRGFINMEMERLSRVCHPDDQWIDTLELARNKFPG 129

Query: 105 LPSSLKNACLALNFS 119
           + +SL   C   N S
Sbjct: 130 MANSLDALCRRFNIS 144


>gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 978

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 39/144 (27%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL- 57
            + +D ET         L ++     + + +I       D              +P ++ 
Sbjct: 19  IVVLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGC----------PIPEEIT 68

Query: 58  -LQYLRDETVM--------------------CVAHNSLFERILFKKTLGIDIPSKRWICT 96
            L  + DE V                      +AHN+ F+R   ++  G    S  WI T
Sbjct: 69  TLTSITDEDVKGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDT 128

Query: 97  SVLARTNGL---PSSLKNACLALN 117
             L+R          L +   A  
Sbjct: 129 LSLSRIALPRLSSHKLSSMAEAFG 152


>gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 43/154 (27%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP 54
           M  +  +D ET    P          E AVI L          ++ DR +        +P
Sbjct: 8   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-------RNGQVVDRFQSLMNAGRRIP 57

Query: 55  SDLLQY--LRD---------ETVMC-----------VAHNSLFERILFKKTLG-IDI-PS 90
           SD++    + +           VM            VAHN+ F++  ++  LG + +   
Sbjct: 58  SDVVALTGITNDMIATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSAD 117

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
             + CT ++AR          L +    L   + 
Sbjct: 118 HAFACTMLVARRIYPDARSHRLSSLAEMLRLPQT 151


>gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 23/154 (14%)

Query: 38  DDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           D     L D    +   P      L D  V+ V H    +  +  +  G     +    T
Sbjct: 50  DGRRAYLIDPLAVRDWHP--FATLLDDAAVVKVLHACSEDLEVLLRLTGS--LPQPLFDT 105

Query: 97  SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
            + A    +  S+      L  +    ++ +G+       +                   
Sbjct: 106 QLAAGYLNIGFSMGY--SRLVQAVLGIELPKGETRSDWLQRPLS---------------- 147

Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           ++   Y   D +   EL++ L+P    ++  W+L
Sbjct: 148 EMQVRYAAEDAQHLAELYEALLPKLSDDKRAWVL 181


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC------AYAWDD--EPVKLWDRTEQ-- 50
           +S +  D ET    P    G     + A + +         ++D    P +         
Sbjct: 492 LSFVVFDTETTGLSP---RGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRV 548

Query: 51  ----SAMPSDLLQYLRDETV--------MCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
                 M  D    +             + VAHN+ F+    +   K +G        +C
Sbjct: 549 HHISDDMVQDAPDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFD-NPVLC 607

Query: 96  TSVLARTNGLP---SSLKNACLALNFS 119
           T +++          +L   C     +
Sbjct: 608 TVLMSAGLFDHSGQHTLDALCERFGIT 634


>gi|71901132|ref|ZP_00683238.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71729096|gb|EAO31221.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 50/199 (25%), Gaps = 32/199 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E        + G +       + L   A +DE + +        M   L  +L 
Sbjct: 21  RIGMDTE------FIREGTFW----PELALVQIAIEDEILLVDPLVPG--MTDALGLWLA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
              V+ + H++  + I FK   G  +  +    T +                    +   
Sbjct: 69  APNVIKIMHSASEDLIAFKYACG--VLPRPLFDTQIG------------------AALTG 108

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                G   +               +   H        +Y   DV     L   L     
Sbjct: 109 LGGGMGYQKLVTKVTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLA 168

Query: 183 GERDLWLLDQTINDRGYRI 201
                  L++        I
Sbjct: 169 EMSRSAWLEEDCTRLTDNI 187


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 95/404 (23%), Gaps = 65/404 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTE-------- 49
            +  D ET             Y    VI L A    D        +  D           
Sbjct: 428 YVVFDTETTGL-------SAQY--NKVIELAAVKMKDGEKIGEFEEFIDPGHPLSQTTIN 478

Query: 50  ----------QSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRW 93
                      S    ++ +  R+  +  + V HN+ F+         +    +I  + W
Sbjct: 479 LTHITDAMVRGSKTEEEVFKLFREFCKGCIIVGHNATFDVDFMNTGYLRHGMPEIK-EPW 537

Query: 94  ICTSVLARTN--GLPS-SLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDS---P 143
           + T  LAR     +   +L      L              E    I              
Sbjct: 538 VDTLPLARILYSDMKRFTLDTLAKRLKVDLEHHHRAIYDAEATGYIFYKMLADAREQFDI 597

Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203
            Y      H+     + +          +    L  L     D  +       R  R+  
Sbjct: 598 LYHDDFNKHMVQPDTYKQQHPFHAIVLAKTQDGLKNLFKLASDSMVNHFY---RVARVPR 654

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
            ++ K +E +       D ++             T   +   +    I    +    L+ 
Sbjct: 655 SVLEKYREGLLVGSGCADGEVFTAMMQKGYE---TAKAKAKNYDYLEIQPKALYAPLLER 711

Query: 264 --ILSHSNITQLAKDLILNRLASSGSAILKLN-TLSEAVSSDGRLRGTLQFYGASRTGRW 320
             +     +  + K+++          +   +        +  R        GA+   R 
Sbjct: 712 ELVKDEEELEDIIKNMVKLAEELDKPIVASGDVHFMNKEDAIYRKILIHSQGGANPLNR- 770

Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364
                  +NLP              A    E     +    + V
Sbjct: 771 ------LKNLPDAHFRTTDEMLDEFAFLGPELAKKVVVDDPNKV 808


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 42/147 (28%), Gaps = 45/147 (30%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAY---------------------------AWD 38
           +D+ET    PL             I L  +                             D
Sbjct: 8   LDLETTGATPLVDRIT-------EIALIRFENGQEVSRWQTLVNPETAIPPFIQRLTGID 60

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWIC 95
           D  V          +  +LL +L     +  AHN  F+    K      GID+  ++ +C
Sbjct: 61  DGMVATAP--HFKEVAGELLDHLE--GAVLCAHNVRFDHGFLKNEFKRIGIDLR-QKVLC 115

Query: 96  TSVLARTN---GLPSSLKNACLALNFS 119
           T  L+R         SL +     +  
Sbjct: 116 TVKLSRKLYPQHRSHSLDSIIERHSLQ 142


>gi|307689099|ref|ZP_07631545.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 68

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGM 614
           T +  R  + G K  ENIVQAISRDIL   +
Sbjct: 27  TKKWGRLESCGPKFVENIVQAISRDILINAL 57


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 9/77 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
            ++   L + L+    + VAHN+ F+    K      G+       +CT  L+R+     
Sbjct: 95  ESLAESLAERLQ--GRLFVAHNARFDYGFLKNAFRRAGVTFR-ADVLCTVRLSRSLFPSV 151

Query: 107 --SSLKNACLALNFSEH 121
               L         +  
Sbjct: 152 ERHGLDALIARFGLTPK 168


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVITLCAYAW-----DDEPVKLWDRTEQ------- 50
           +D+ET        +    V+    +  +    Y       D  PV +   T         
Sbjct: 13  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTTVNPERDPGPVWIHGLTSDVLEGAPL 72

Query: 51  -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
              + ++    L     + VAHN++F+  +  +       + P ++ +CT  L++   LP
Sbjct: 73  FKDVAAEFAARLE--GRVLVAHNAVFDWQMIAREYARARGEAPVRQRLCTIALSKELKLP 130

Query: 107 ---SSLKNACLALNF 118
                L++       
Sbjct: 131 LPNHKLESLAAHFGV 145


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 35/160 (21%), Gaps = 63/160 (39%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            +  D ET    P           Q  I   A                  + +++L  L 
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIA---------AVRIVNGRRVEAEVLDTLV 536

Query: 63  DETVMC-------------------------------------VAHNSLFERILFKKT-- 83
           +                                          VAHN+ F+    ++   
Sbjct: 537 NPHRPIPPSSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEP 596

Query: 84  -LGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
            +G        + T +L+          SL      +  +
Sbjct: 597 LIGRRFD-NPILDTVLLSAVLFGQSDVHSLDALTHRIGIT 635


>gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 339

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 46/177 (25%), Gaps = 28/177 (15%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  DE + +        M   L  +L    V+ + H++  + I FK   G  
Sbjct: 13  PELALVQIAIGDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 68

Query: 88  IPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
           +  +    T + A   GL   +   K      N          GK               
Sbjct: 69  VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVE-------LGKG-------------- 107

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
              +   H        +Y   DV     L   L            L++        I
Sbjct: 108 ETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNI 164


>gi|28199772|ref|NP_780086.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182682522|ref|YP_001830682.1| ribonuclease D [Xylella fastidiosa M23]
 gi|28057893|gb|AAO29735.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182632632|gb|ACB93408.1| ribonuclease D [Xylella fastidiosa M23]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 38/202 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E        + G +       + L   A  DE + +        M   L  +L 
Sbjct: 21  RIGMDTE------FIREGTFW----PELALVQIAIGDEILLVDPLVPG--MTDALGLWLA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFS 119
              V+ + H++  + I FK   G  +  +    T + A   GL   +   K      N  
Sbjct: 69  APNVIKIMHSASEDLIAFKYACG--VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVE 126

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                   GK                  +   H        +Y   DV     L   L  
Sbjct: 127 -------LGKG--------------ETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTE 165

Query: 180 LSDGERDLWLLDQTINDRGYRI 201
                     L++        I
Sbjct: 166 RLAEMSRSAWLEEDCTRLTDNI 187


>gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 30/152 (19%), Gaps = 43/152 (28%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--------RTEQSAM 53
             + +D ET    P        Y   A +     A        +          T  +  
Sbjct: 4   RYVVLDTETTGLSP-------RYHRLAEVGCVEIACGRITGNFFHSYINPRQRMTRGAQA 56

Query: 54  PSDLLQYL--RDETV--------------MCVAHNSLFERILFKKTLGIDIPS------- 90
              L         T                 V HN  F+        G+           
Sbjct: 57  VHRLRDEFLAEQPTFRAIAQRLLFFLCRSTLVGHNLSFDLNFLD--AGLATAGFMPAARY 114

Query: 91  -KRWICTSVLARTNGLPS--SLKNACLALNFS 119
               I T +     G     SL   C  L   
Sbjct: 115 CHGVIDTMLHLAQRGRRRRFSLDACCDRLGVR 146


>gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1]
 gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 52/185 (28%), Gaps = 44/185 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D + V L D  +     P   
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGDSVVLIDPLSITDWTP--F 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L D  V    H    +  +F  T G  +  +  I T +LA   G P S   A     
Sbjct: 76  RDLLLDGAVTKYLHAGSEDLEVFLNTFG--VLPEPLIDTQILAAFCGRPMSWGFAA---- 129

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   +Y   DV     +  +L
Sbjct: 130 ----MVEEYTGIALDKSES----------RTDWLARPLTERQCDYAAADVWYLLPIAHKL 175

Query: 178 IPLSD 182
           +  ++
Sbjct: 176 MAETE 180


>gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem]
 gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem]
          Length = 312

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 36/121 (29%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--------AMPS 55
           L +D ET           +   +   + + A+ +D E  +++  +E+          +P 
Sbjct: 55  LCLDTETTGLD-------YKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGFPIPE 107

Query: 56  DLLQ--------------------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
           ++ +                     L +++ M +AHN+ F+R   +           W C
Sbjct: 108 EVKEITGISDDMVRGQAFDDAFINLLAEKSHMVIAHNAAFDRKFVEARFPAFTKL-PWAC 166

Query: 96  T 96
           T
Sbjct: 167 T 167


>gi|51243854|ref|YP_063738.1| hypothetical protein DP0002 [Desulfotalea psychrophila LSv54]
 gi|50874891|emb|CAG34731.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 274

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 35/174 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDRTEQSAMPSDLLQYLRDE 64
           IDIET                 A IT  A  +D + +              D+ +Y    
Sbjct: 88  IDIETTGLSD-----------DAEITTIAV-YDGKKIMHYIQGHNLDDFVRDIRRY---- 131

Query: 65  TVMC----VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
            V+           F+  + ++   I +                L   L +  +      
Sbjct: 132 KVLISYSGTG----FDLPVIERYFKIKLD----------HAHIDLRYVLASLGIRGGLKG 177

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
              ++   +  +         +            A Q    Y   D      L 
Sbjct: 178 CEKQIGIDRGDLDGINGCFAITLWRAYQLQGDQAALQTLVAYNIEDSVNLERLM 231


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1398

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 31/144 (21%)

Query: 2   SKLFIDIETRS---PQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVK-------------- 43
             +  D+ET                  E   I    +   + E                 
Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKVENGEIVEEFSQLINPERPIPEKIQKLTGITNEM 440

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-----KTLGIDIPSKRWICTSV 98
           + D+   S +    L + +D   + VAHNS F+    +       L  D  +   I T +
Sbjct: 441 VIDKPTISEVLPKFLDFCKDS--ILVAHNSDFDTGFVREKASENNLPYDFDA---IDTVI 495

Query: 99  LARTNGL---PSSLKNACLALNFS 119
           L+R          L      LN S
Sbjct: 496 LSRLLMPDLKNHKLNTIAKELNVS 519


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL-- 105
                 + + ++D   + VAHN+ F+          LG        I T  ++R      
Sbjct: 502 EQAFKQINEIIKDA--ILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLTISRIIYPDL 559

Query: 106 -PSSLKNACLALNFSEHL 122
               L +    +N S   
Sbjct: 560 KSHRLGSLAKRVNISYDP 577


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 26/140 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLW----------- 45
            +  DIET         + ++      E   I   A   +                    
Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGRYATFVNPHERIPYHIQQLTNINDDMV 480

Query: 46  -DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            D  E   +  + ++++ D   + VAHN+ F+    +   K  G+D     ++ T  LAR
Sbjct: 481 KDAPELEPVLKEFVEFVGDG--VLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELAR 538

Query: 102 TNGLP---SSLKNACLALNF 118
                     L         
Sbjct: 539 LVHPGLKNHRLNTLADKYKV 558


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 40/148 (27%), Gaps = 29/148 (19%)

Query: 1   MSK---LFIDIETRSPQPLP-----KVGVWAYAEQAVIT---------LCAYAWDDEPVK 43
           MS    + +D ET    P       +VG     E   I              +W  E + 
Sbjct: 1   MSTPAVIVLDFETTGHSPNRGDRPIEVGAVR-IEHDRIVDRFQALMNPGFTISWFIERLT 59

Query: 44  LWD---RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI--DIPSKRWICT 96
                          +++    D    +  VAHN+ F+R      L +     S    CT
Sbjct: 60  GISNDLIAHAPPC-EEVMNRFADWMGDLPLVAHNAGFDRAFLDAELALIGRHQSNPMACT 118

Query: 97  SVLARTN---GLPSSLKNACLALNFSEH 121
            + +R          L      L     
Sbjct: 119 VLASRRLFPESPNHKLATLVNHLGIFTD 146


>gi|110633474|ref|YP_673682.1| ribonuclease D [Mesorhizobium sp. BNC1]
 gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A       +    +   +       + +E V+ V H +  +  +     G  
Sbjct: 37  PELCLIQMAAPGVTALVDPLADGMDLAPFFR-LMGNEQVVKVFHAARQDIEIIYNRGG-- 93

Query: 88  IPSKRWICTSVLARTNGLPSS 108
           +       T V A   G   S
Sbjct: 94  LIPHPIFDTQVAAMVCGFGDS 114


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 28/138 (20%)

Query: 6   IDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-------------RT 48
           +D+ET         + ++G         +    YA    P +  D               
Sbjct: 29  VDLETTGVASDACSITEIGAVKVRG-GEVLG-EYATLVNPGEAIDARISALTGITDAMVA 86

Query: 49  EQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLARTN- 103
           +  A+   L  +L      + VAHN+ F+    +       +  P  + + T VLAR   
Sbjct: 87  DAPAIEEVLPSFLEFARGAVWVAHNAPFDVGFLRSACAQAELPWPRPQVVDTVVLARRLV 146

Query: 104 ----GLPSSLKNACLALN 117
                    L        
Sbjct: 147 DRSEVPNKRLSTLARYFG 164


>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
 gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
          Length = 350

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 35/158 (22%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           L   A   +   + D      M    D  +   D  ++ V H +  +    ++   +   
Sbjct: 10  LIQIATRKKD-YIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQR--DLSAY 66

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 T   AR   L                       K L+  +C        Y   +
Sbjct: 67  LCNMFDTGQAARVLELGGG-----------------YSLKNLLDFYC-------GYKADK 102

Query: 150 ANHVQAW------QLFGEYCKRDVEATRELFKRLIPLS 181
           AN +  W      +   +Y + DV     ++ R+    
Sbjct: 103 ANQLADWRQRPLSERMKQYARDDVHYLLYIYDRMRAQL 140


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 30/147 (20%)

Query: 3   KLFIDIETR----SPQPLPKVGVWAYAEQAVITL---------------CAYAWDDEPVK 43
            + +D+ET     S   + ++G         +                  +         
Sbjct: 20  FVVVDLETTGGSPSECGITEIGAVKVRA-GEVLGEFQTFVNPGQPIPAFISVLTGITDAM 78

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLA 100
           + D           L+     +V+ VAHN+ F+    K   G    D PS   + T  LA
Sbjct: 79  VRDAPRVEPALVAFLE-FAAGSVL-VAHNAGFDVSFLKAACGRAERDWPSFPVVDTVHLA 136

Query: 101 RTN-----GLPSSLKNACLALNFSEHL 122
           R            L +  +    +   
Sbjct: 137 RQLVTRDEAPNHRLGSLAVLFGATTTP 163


>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
 gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 56/209 (26%), Gaps = 43/209 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------KLWDRTEQSAMPS 55
           +L ID E         +    Y   A++ L   A DD                +    P 
Sbjct: 27  RLGIDTE--------FMSEGRYR--ALLCLVQVAVDDADAPNGVRIALFDPFDKLDFAP- 75

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            L   L D  +  V H +  +  + ++    D+       T V A   G  +        
Sbjct: 76  -LAAVLADPEIEIVLHAARQDVAIMRRAWRTDVR--EVFDTQVAAGFAGYGA-------- 124

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
               +       G AL  R  K +        TR +     +    Y   DV    +L  
Sbjct: 125 ----QTGYGNLLGAALGQRVGKTAS------YTRWDARPLTEEQLSYAAEDVLHLLQLSD 174

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLD 204
            L              Q   +   R+D  
Sbjct: 175 ALHDKLSAHGR----LQWAQEECRRMDEA 199


>gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703]
 gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 1   MSKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M ++ +D E     T                   + L    +D E + L D      +  
Sbjct: 51  MPQVALDTEFVRTRTYY---------------PQLGLIQL-FDGERLSLIDPLSI-TVWQ 93

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNA 112
                L D  V    H    +  +F    G  +    ++ T +L    G P S       
Sbjct: 94  PFCDLLLDPAVTKYLHAGSEDLEVFLNAFG--LLPTPFVDTQILVAFLGKPLSYGFAALV 151

Query: 113 CLALNFSEHLTK---MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
              +  +   ++       + L  + C+ +     Y    A  +        + +  ++ 
Sbjct: 152 ADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAALDE 211

Query: 170 TRELFKRLIPLSDGERDLWLL 190
            R+L +R   +   E+    +
Sbjct: 212 CRQLCQRKQDVLAPEQAYREI 232


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 31/143 (21%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVI-------------TLCAY----AWDDEPV 42
            +  D+ET    P+    +   A   E   I                      +  D+ V
Sbjct: 470 YVVFDLETTGFSPIKDKIIEIGAVKVEHGEITDKFSTFVNPKVPIPFQITQLTSITDQMV 529

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
                 +   +    L+++ D     VAHN+ F+    +   +   I         T  +
Sbjct: 530 --IGAPDIETVLPQFLEFIGDAA--LVAHNASFDVSFIEQNCRYQDIQPDFTSV-DTVAM 584

Query: 100 ARTNGLPSS---LKNACLALNFS 119
           AR      S   L     AL+ S
Sbjct: 585 ARILLPTLSKYKLNVVANALHIS 607


>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
 gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
          Length = 828

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GL 105
            +   +   + D   + VAHN  F+  L  + L   G ++ + R   T  LA+       
Sbjct: 75  EIARKIFDLIED--CIFVAHNVKFDANLLSEALFMEGYELRTPRV-DTVELAQVFYPTLE 131

Query: 106 PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPY 145
              L +    LN          +       +       I S P 
Sbjct: 132 HYKLSHLSKVLNLDLAQAHTAIEDARATGQLLFHLMDKIASLPR 175


>gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
 gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 35/178 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + ID ET   +P    G +       ++L   +  D       R  +   P+ L ++L
Sbjct: 43  KVVGIDTET---KPSFTRGTYH-----KVSLVQISTLDH--CFLFRLNKIDFPAALAEFL 92

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC--TSVLARTNGLPSSLKNACLALNFS 119
            DE +  +  +   +     K           +   T V +               L   
Sbjct: 93  SDENIKKIGLSLRDDLNGLNKHHAF--KPANCVDIQTIVQSYGIL----------ELGLQ 140

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
           +    +  GK            S     T   + +  +    Y   D  A+ +++ +L
Sbjct: 141 KI-YAILFGK----------KISKSQRLTNWENPELTEQQQRYAATDAWASLQIYLQL 187


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 25/137 (18%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY---AWDDEPVKLWDR 47
            DIET     +     ++G     E              I + ++       +   + D 
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESIVKDA 456

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN-- 103
                +  + L++      + VAHN+ F+    K K    ++      + T  L+R    
Sbjct: 457 PSIEEILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLYK 514

Query: 104 -GLPSSLKNACLALNFS 119
                 L      L   
Sbjct: 515 DLKNYKLDTLSEHLQVK 531


>gi|313905697|ref|ZP_07839058.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
 gi|313469521|gb|EFR64862.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
          Length = 66

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675
           M ++P W   + L+A+GYE   Y+K
Sbjct: 41  MGRSPDWIPDILLRADGYETNFYKK 65


>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
          Length = 526

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 34/180 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ ID+E            +   +     L   +   +   + D          L +   
Sbjct: 230 QIAIDLE---------HHSYRTFQGFTC-LMQLSTRKKD-YIVDTLALRDELHVLNEVFT 278

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
           D   + V H ++ +    ++ LG+ +       T   AR        L+           
Sbjct: 279 DPRKLKVLHGAISDIEWLQRDLGLYL--VNMFDTGEAARVLQFSRIGLQFLLKHY----- 331

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                         C    D                 F EY ++D      ++ R+    
Sbjct: 332 --------------CNIETDKAYQLADWRMRPLP-PAFIEYARKDTHYLLYIYDRIRNDL 376


>gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLC-----AYAWDDEPVKLWDRTEQ 50
           ++ + ID ET      S   +    V        +         + W +  V      + 
Sbjct: 4   LNFVAIDFETAAPARASACSIALTVVQNDQITDELYSLINPETKFHWRNVQVHGIHEADV 63

Query: 51  SAMPS--DLLQYLR---DETVMCVAHNSLFERILFKKTL-GIDIP--SKRWICTSVLART 102
              P+  +L   L+       + VAHN+ F+  + KKTL   ++     + + T   +R+
Sbjct: 64  QDAPTFPELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTLRTSRS 123

Query: 103 N--GLP-SSLKNACLALNFS 119
                P   L   C  L   
Sbjct: 124 FFPNYPNHKLNTLCDNLGIE 143


>gi|289676535|ref|ZP_06497425.1| ribonuclease D [Pseudomonas syringae pv. syringae FF5]
          Length = 142

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 16/108 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYL 61
            + +D E         + V  +   A +       D +   L D        P  L   L
Sbjct: 26  FVALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWRP--LSALL 72

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
            +  V+ V H    +  +  +  G          T + A    L  S+
Sbjct: 73  ENRDVIKVVHACSEDLEVLLRLTGS--LPVPLFDTQLAAAYLNLGFSM 118


>gi|40063040|gb|AAR37896.1| ribonuclease D, putative [uncultured marine bacterium 560]
          Length = 358

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 70/261 (26%), Gaps = 44/261 (16%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L ID E     T                   + L   A   +  +  D    + +   L 
Sbjct: 34  LAIDTEFKRINTYY---------------PELCLVQIAT-TQFAECIDVLSINDL-EPLF 76

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L       + H++  +       L   IP      T + A     P  +         
Sbjct: 77  EKLYHNKTEWIVHSARQDIEAL-YHLSKRIPV-SLFDTQIAASLLNYPLQISYQA----L 130

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
           +E L  +   K+           + P       +      +       ++    + K++ 
Sbjct: 131 TEILQDVLLDKSYTRFD----WTTRPLPANVVEYALDDVRYLLPNFEKLKHELTISKKIQ 186

Query: 179 PLSDGERDLWLLDQT-----INDRGYRIDLDLVLKLQELIAQERKKL---DEDIVKLTDG 230
              D E   +LLDQ      I    Y+     + KL +    +  KL    E   +  + 
Sbjct: 187 -WLDEETR-FLLDQELYKPSIEQICYK--TKGLSKLGKKFQDKAIKLVTWREKSAQQKNK 242

Query: 231 IIRSSRQTYALRMYLFLITGI 251
             +       L  Y    + +
Sbjct: 243 PRKWIMSDQKLLDYACGKSKL 263


>gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 169

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 69  VAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
           VAHN+ F+R + +      GI +P   ++CT   +R         L   C         
Sbjct: 86  VAHNAPFDRRVLEACCQSNGIALPDLPFVCTLRESRRKLKLPSHKLDAVCRCCGIPLDH 144


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 66/300 (22%), Gaps = 58/300 (19%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG----IDIPSKRWICTSVLARTNGLP 106
                 + Q  ++   + VAHN+ F+     +        ++  +  I T  ++R     
Sbjct: 471 EEAAIKIKQIFQNS--ILVAHNARFDYGCLVEFFKELELYELE-QPVIDTLEVSRFLAPT 527

Query: 107 ---SSLKNACLALNFSEHLTKMEEGKA---------------LIARFCKGSIDS------ 142
               +LK        +       E                  LI    K   D       
Sbjct: 528 QKRHNLKELAK---NASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLNSLNQV 584

Query: 143 ----PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +        +   +                             +      N+  
Sbjct: 585 GSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVSLSNTDNFLSKPLLFYDKILPSNNLL 644

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           +         ++ L       L+  I K     I +        ++L     I   D+ +
Sbjct: 645 WGTSGLDSQLMEILFYNHHNDLETLIKKFDFIEIPTPSS----FIHLIKRNKIKKEDIIK 700

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           G               K +I          +         ++ + ++   +  Y     G
Sbjct: 701 G--------------LKLVIELARKHKKLIVASSE--PRYINKEDKIFHLVYIYAKGVGG 744


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY-----AWDDEPVKLW 45
            DIET     +     ++G     E              I + ++       D+  VK  
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVK-- 454

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN 103
           D      +    L++  +   + VAHN+ F+    K K    ++      + T  L+R  
Sbjct: 455 DAPSIEEILPKFLEFASNS--VLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHL 512

Query: 104 ---GLPSSLKNACLALNFS 119
                   L      L   
Sbjct: 513 YKDLKNYKLDTLAEHLQVK 531


>gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4]
 gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 71/267 (26%), Gaps = 41/267 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E        +   + Y  +A +       +     L D    +   + L   L D
Sbjct: 56  VAVDTE--------RASGYRYWPKAYLV--QLRREGSGTVLIDPIALADDLAPLRDVLND 105

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122
                V H +  +     +   +++  +    T +  R  G    +L      L      
Sbjct: 106 --TEWVLHAASQDLPCLAE---LNLRPRSLFDTELAGRLAGYERVALGTLVELL----LG 156

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181
             +E+G +      +                  W     Y   DVE   EL ++L     
Sbjct: 157 YTLEKGHSAADWSKRPL-------------PVDW---LNYAALDVELLNELREKLEAELT 200

Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                E      +            +   +   +      +    + ++       +R+ 
Sbjct: 201 AQGKLEWARQEFEAVRTAPPPAPRAEPWRRTSGVHKIRSPRGLAAVREMWQARDELARKR 260

Query: 239 Y-ALRMYLFLITGIDLVDMSEGTLKSI 264
             A    L     ++ V     T++ +
Sbjct: 261 DRAPSRILPDSAIVNAVTSDPKTVEEL 287


>gi|190345004|gb|EDK36807.2| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 54/217 (24%), Gaps = 21/217 (9%)

Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499
            + G A  + T+           S+  +      +  +  ++                  
Sbjct: 710 IHGGTALGWMTLEGDKNEGTDLHSKTAEILGISRNDAKVFNYGRIYGAGVK--------- 760

Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559
                 + K + ++      L            Q G S    R                 
Sbjct: 761 --FATTLLKQFNSELTDAAALKVAQDLYARTKGQTGKSKFLDRPMYHGGTESVMFNALEA 818

Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM-- 614
           I      R          +  +  + + + +  Y        +Q+   D   +L   M  
Sbjct: 819 IAYQDDPR----TPVLGAAITDALSKKNLNKNNYMTSRINWAIQSSGVDYLHLLLISMEY 874

Query: 615 -KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                +    ++LTVHDEI     +   + +  L  +
Sbjct: 875 LIARYQVDARLILTVHDEIRYMVKEDQKYKLALLLQV 911


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T +LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVLLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY-----AWDDEPVKLW 45
            DIET     +     ++G     E              I + ++       D+  VK  
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVK-- 454

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN 103
           D      +    L++  +   + VAHN+ F+    K K    ++      + T  L+R  
Sbjct: 455 DAPSIEEILPKFLEFASNS--VLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHL 512

Query: 104 ---GLPSSLKNACLALNFS 119
                   L      L   
Sbjct: 513 YKDLKNYKLDTLAEHLQVK 531


>gi|262212299|gb|ACY35766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMRGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 41/154 (26%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKL----------WDRT 48
            +  D ET         +  +G  A           +  D   V++              
Sbjct: 62  FVVFDTETTGLSVPNDDVIALGGVALPPGGE--GAEWTEDTGKVRVFDRLVNPHRPIPVL 119

Query: 49  EQS----------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK- 91
            +                  +  D L ++ D  V+ VAH   F+     K L   + +K 
Sbjct: 120 AREITGIDDDMVFSQPTIYPVLDDFLDFI-DGAVL-VAHGIAFDVGFLDKYLR-PLRTKL 176

Query: 92  --RWICTSVLARTNGL---PSSLKNACLALNFSE 120
               I T  L+R         SL         + 
Sbjct: 177 YHPVIDTITLSRVLEPFRAEHSLDALVADYGITP 210


>gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 17/110 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWA------------YAEQAVITLC----AYAWDDEPVKLWDR 47
           L ID ET    P     +               A+ + +       A + +  P ++   
Sbjct: 80  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETNAAESINRIPAEVTRL 139

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
            +      D  Q L D   + VAHN+ F+R  F K   +   SK W+CT 
Sbjct: 140 DQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQ-LPAVSKPWLCTM 188


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 38/149 (25%)

Query: 5   FIDIETRS------------PQPLPKVGVWAY---------AEQAVITLCA--YAWDDEP 41
             D+ET                 +     W +         AE + +      YA ++  
Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDMRTHETWEWLIYPEGEIPAEASAVHGITTEYARENG- 379

Query: 42  VKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFKK---TLGIDIPSKRWICTS 97
                   ++   + + Q   + T    VAHN+ ++  +F +     G+ +P    I T 
Sbjct: 380 ------MPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLALPDFFVIDTL 433

Query: 98  VLARTNGL----PSSLKNACLALNFSEHL 122
           V+ +        P +L   C     S   
Sbjct: 434 VIDKHAEPFRKGPRTLDAVCARWGVSLDN 462


>gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 42/172 (24%), Gaps = 15/172 (8%)

Query: 25  AEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
                + +   A+ D  + L D       +       L    +  V H+   +       
Sbjct: 67  CRHGSLCIMQLAFPD-AIYLVDAIQGGEKLMKACKPALESSYITKVIHDCKRDSEALYFQ 125

Query: 84  LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            GI +     + + +         G   S  +    +           G   I+   K  
Sbjct: 126 FGIKLH--NVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPR--YCG---ISYLEKKE 178

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-LFKRLIPLSDGERDLWLL 190
           +        +    +           D       ++ +++     E  LW L
Sbjct: 179 VRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEEL-NEHSLWKL 229


>gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 388

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 20/155 (12%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           E     D   +    S L + + +E  + V H +  +  +        +       T V 
Sbjct: 48  EEAVAVDALAEGLDLSPLFELMANEATVKVFHAARQDLEIIWNLA--KLIPTPLFDTQVA 105

Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
           A   G               +          L+    + S+D        +    +    
Sbjct: 106 AMVCGFG------------DQISYGD-----LVQTVTRVSLDKSSRFTDWSRRPLSPAQV 148

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
            +Y   DV   R+++  L    +    L  L   +
Sbjct: 149 -DYAIADVTYLRDIYLYLRRKLETSSRLAWLSDEM 182


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 40/179 (22%), Gaps = 36/179 (20%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------------LWDRTE---- 49
           T     +   G+ A     +I + A    D  V                 + + T     
Sbjct: 426 TYVVFDVETTGLSA-VYDTIIEIAAVKIQDGEVVDTFERFANPGRPLSNTIIELTHITDD 484

Query: 50  ----QSAMPSDLLQYLRD-ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLAR 101
                  +   L +Y       + VAHN+ F+        K  G+   +   I T  L R
Sbjct: 485 MLKDAPDISEVLKEYNEWIGDAVLVAHNASFDIGFLNVGLKKAGLPKSNNPVIDTLELGR 544

Query: 102 TNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
                     L       N             E    I         +         + 
Sbjct: 545 FLYPDFKNYRLNTLAKKFNVELTQHHRAIYDTEATGQIFLKMLKDARNRGITYHDELNQ 603


>gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
          Length = 178

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 21/143 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVIT---LCA-------YAWDDEPVKLW---DR 47
           M+ + +D ET +P       +     Q  +    L +       + W +  V      D 
Sbjct: 1   MNFIAMDFETAAPTRASACSIALTVVQNDVITDELYSLINPETEFNWRNVQVHGIHQADV 60

Query: 48  TEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTS--VLA 100
           ++    P    +++       + VAHN+ F+  + KK      I+    + + T     +
Sbjct: 61  SDAPTFPELWPVVKQFFTPDKLVVAHNATFDNSVLKKTLERYQINRLPYQTLDTLRTSKS 120

Query: 101 RTNGLP-SSLKNACLALNFSEHL 122
                    L   C  L      
Sbjct: 121 FYPDYTNHKLNTICDNLGIDLQH 143


>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 34/143 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWA---YAEQAVITLCAYAWDD--EPVKLW----------- 45
             + +DIET    P+    +     Y E+  +      +++   P ++            
Sbjct: 3   KYVVVDIETTGAHPVQSEIIEIGAVYIEEGQVKKI---FNELVRPTQIISDYIISITGIT 59

Query: 46  -----DRTEQSAMPSDLLQYLRDETVMCVAHN-SLFERILFK---KTLGIDIPSKRWICT 96
                D      +    + +  D  V  + HN  LF+  + K     LG          T
Sbjct: 60  NEMVADAPPIEEVMPRFIDFCED--VPLIGHNIILFDYRMLKTKATALGFTFEKMGV-DT 116

Query: 97  SVLAR---TNGLPSSLKNACLAL 116
            V++R    +     L + C   
Sbjct: 117 LVISRKMLAHLPSRKLGDLCEHY 139


>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 952

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 41/150 (27%), Gaps = 46/150 (30%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTE-----QSAMP 54
           M  + +D ET   +P          E+A I    A       +   D        +  +P
Sbjct: 1   MEWIIVDFETTGLEP----------ERAEILEIGALRVRGGEI--VDTFHTLVRPERPIP 48

Query: 55  SDLLQY--LRDETV--------------------MCVAHNSLFERILF---KKTLGIDIP 89
            ++ +   L D  V                        H+  FER          G+ + 
Sbjct: 49  DEITRLTGLSDTDVAGAPSEREALMRFATFAGDTPMAGHHWAFERSFLRDRASRYGLPLQ 108

Query: 90  SKRWICTSVLARTNGL---PSSLKNACLAL 116
               +CT  LAR          L+     L
Sbjct: 109 PGDGLCTLNLARILAPRLMSHRLEYLARRL 138


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+ +DL   L  +  + +AHN+ F+R   +      G        +CT  L+R      
Sbjct: 80  EAIAADLFARL--DGKLFIAHNASFDRGFLRSEFQRAGFAFNPD-VLCTVRLSRALFPAE 136

Query: 106 -PSSLKNACLALNFSE 120
               L           
Sbjct: 137 KRHGLDALVERHALMP 152


>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
 gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 32/153 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------ 54
           + +L +D ET               E   + L         V       +  +P      
Sbjct: 5   LRELVLDTETTGLD---TESGHRIIEIGCVELIN-RIPTGKVFHRYLNPERDIPYHSFKI 60

Query: 55  ----SDL---LQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                +         D            + V HN+ F+         K     I S R +
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNAGLISSDRVL 120

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
            T  LAR    G P+SL   C   + S    ++
Sbjct: 121 DTLPLARKKFAGSPASLNALCKRFDISLENREL 153


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 27/139 (19%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQ-----------AVITLC----AYAWDDEPVKLWD 46
           IDIET         + ++    Y                I L     +         + D
Sbjct: 14  IDIETTGFNPESNDIIEIAAIKYQGNIILDRFWSLIKPEIELIPEHISKLTGITTAMVID 73

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTN 103
           +     +  D L ++ +   + V HN  F+     K     +       +ICT  LAR  
Sbjct: 74  QPTVDKVLPDFLNFIEN--TILVGHNIRFDLAFLNKKAKEILNKTIKNPFICTDHLARKI 131

Query: 104 ---GLPSSLKNACLALNFS 119
                  SL +     N  
Sbjct: 132 LSDIDSKSLASIAQHFNIP 150


>gi|82753264|ref|XP_727606.1| ribonuclease D [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483534|gb|EAA19171.1| Ribonuclease D [Plasmodium yoelii yoelii]
          Length = 510

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 70/252 (27%), Gaps = 43/252 (17%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFER-IL 79
              E   + L     +D  +            +P  +   L ++ ++ V H+   ++ + 
Sbjct: 174 KIIENKKLCLIQLCSND--ICFVFNINNLNGEIPLSVKTVLENKKIIKVCHDIKNDQDMF 231

Query: 80  FKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFC 136
             K    +I         +   +      P SL+N            +      L    C
Sbjct: 232 LSK----NIKINNVFD--LYNYSIDNYIYPPSLQNLVKKYLKKHLDKEY----RLSNWLC 281

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
           K                   +    Y   D  A+RE++  L   +  ++  ++     N 
Sbjct: 282 KNLN----------------EEQIMYAANDSYASREVYISLEKQNKIDQSFFINLNNENC 325

Query: 197 RGY--RIDLDLV------LKLQELIAQERKKLDEDIVKLTDGIIRSSR-QTYALRMYLFL 247
                 ++   +       KL       +  ++ +++   +  I +   Q       L L
Sbjct: 326 YVKHNEVNKICLNENPEYEKLSSKNKIVQNDINHEMINYKNNAIFNKSLQNEKASQCLQL 385

Query: 248 ITGIDLVDMSEG 259
               D    +E 
Sbjct: 386 EKTFDDKTKNES 397


>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 13/102 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S +    +            L   + D     + D  +       L +   D
Sbjct: 62  IGVDLEHHSDRSYRGIT----------CLMQISTDKTD-YIIDTLKLWDHLQPLNKVFCD 110

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
             ++ +   +  + I  ++  GI +       T   A   G 
Sbjct: 111 PNIVKIFQGADSDVIWLQRDFGIYV--VNLFDTFQAASLLGF 150


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 20  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 78

Query: 118 FSE 120
            + 
Sbjct: 79  LAP 81


>gi|34540197|ref|NP_904676.1| 3'-5' exonuclease domain-containing protein [Porphyromonas
           gingivalis W83]
 gi|34396509|gb|AAQ65575.1| 3'-5' exonuclease domain protein [Porphyromonas gingivalis W83]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 2   SKLFIDIETR-SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             +  D ETR S     +  V             +  +       D      +P +L Q 
Sbjct: 30  RTIGFDTETRPSFVRGARPSVALMQMSTETDCFLFRLNM-----ID------IPEELQQL 78

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           L +  ++ V  +   +  + ++   I+   
Sbjct: 79  LENPGILKVGLSLSDDMTVIRRRKPIEPAG 108


>gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121]
 gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 36/190 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      + +   +         L   +  +  V +      +  P  L+  + +
Sbjct: 39  IAVDTE-----FIRRTTFYPITG-----LIQISEGEHAVLVDPLAISNWQP--LIDLMTN 86

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
           ++V+ V H    +  +F + LG  +    +  T V         SL    L L +     
Sbjct: 87  QSVVKVFHACSEDLEVFDRLLG--VVPSPFYDTQVAEAYVSGQWSLSYVKLILAYKNIEI 144

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLIPLS 181
                                 D TR++ ++    +    Y   DV    +++   +   
Sbjct: 145 --------------------AKDETRSDWLKRPLTEAQKRYAALDVIHLIDVYHTQMDAL 184

Query: 182 DGERDLWLLD 191
           D +  L    
Sbjct: 185 DKKNMLAWAL 194


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      GI       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|312375236|gb|EFR22650.1| hypothetical protein AND_14417 [Anopheles darlingi]
          Length = 782

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 36/167 (21%), Gaps = 39/167 (23%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110
           + +P +L   L D+ ++ V                       +      AR       LK
Sbjct: 115 NKLPQELYDLLNDDNIIKVG-------------------VSPYED----ARLLREDYKLK 151

Query: 111 N--------ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                                                       C+            +Y
Sbjct: 152 VESTLDLRFMAERAGLEPFGIARLA----NEVLGLTLDKHWKIRCSDWEAPDLSDRQIKY 207

Query: 163 CKRDVEATRELF----KRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              D     ELF     +L+P         +LDQ + +    +D   
Sbjct: 208 AASDAHVAVELFKKFAYKLVPHYPWTSRKVVLDQVLEEMDCFMDQPY 254


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 39/152 (25%), Gaps = 52/152 (34%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------------- 46
           +D+ET         G+ A AE   I   A    D    + D                   
Sbjct: 22  VDLETT--------GLGAGAEITEIG--AVRIRDG--AVVDEFSSLVKPSRPIPPFITSL 69

Query: 47  -------RTEQSAMPSDLLQYLRDETV------MCVAHNSLFERILFKKTLGIDIPS--- 90
                    +   + S L  +L    +      + VAHN+ F+    ++           
Sbjct: 70  TGITPAMVADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPR 129

Query: 91  KRWICTSVLART-----NGLPSSLKNACLALN 117
            R + T  LAR            L        
Sbjct: 130 VRVVDTLALARLALPRPLVRNHKLGTVASYFG 161


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 36/148 (24%), Gaps = 34/148 (22%)

Query: 1   MSK---LFIDIETRSPQPLPKVG------VWAYAEQAVIT-LCAYAWDDEPVKLW----- 45
           M     + +D+ET    P  K G           E   I        +            
Sbjct: 1   MKTHRYVVVDLETTGNSP--KRGDRIIQLSACLIEHGEIVEQFTSFLNPNKTIPIFIEEL 58

Query: 46  ---------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW 93
                    D      +   L+  L D   + VAHN  F+    +      G        
Sbjct: 59  TGITQPMVDDAPNFEQIAPKLISMLNDS--VFVAHNVTFDLSFLQWELHAAGYKTFQGPI 116

Query: 94  ICTSVLARTN---GLPSSLKNACLALNF 118
           + T  LA+          L +     N 
Sbjct: 117 LDTVELAKICFPTSNSYKLGDLSEKFNL 144


>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
 gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 46/194 (23%), Gaps = 37/194 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E      +             + L  +      + L D          L   L 
Sbjct: 46  EVALDTE---ADNMFHYRT-------RVCLLQFLV-GREIFLVDVLAPLPF-EGLWARLA 93

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
           ++    + H S F+  L           K    T + A+    P   L +          
Sbjct: 94  EKN--LIMHGSDFDLRLL--HDFCRFRPKSIFDTMLAAQLINRPRIGLASL--------- 140

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +   G  L     K +    P            +   +Y   DV     L   L    
Sbjct: 141 -LEDHFGVKLSKESQKANWSKRP----------LTKKMLDYAALDVFHLPALRDILTREL 189

Query: 182 DGERDLWLLDQTIN 195
                +  L Q   
Sbjct: 190 TKLGRIEWLRQQCR 203


>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 826

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 51/197 (25%), Gaps = 36/197 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVKLWDRTEQSAMPSDLLQY 60
           S++ +D+E              Y     +      + + E   + D        S L   
Sbjct: 251 SEIAVDLE-----------HHDYRSYYGLVCLMQIS-NREKDWVIDTLALRDELSKLNVI 298

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119
             +  ++ V H +  + I  ++ LG+ I       T   +R  G    SL+         
Sbjct: 299 FTNHEIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASRQLGFAKFSLQYLLDTFAHF 356

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               K +     I                             Y + D      ++ +L  
Sbjct: 357 RTSKKYQLADWRIR--------------------PLPAPMLAYARSDTHFLLYIYDQLRN 396

Query: 180 LSDGERDLWLLDQTIND 196
               +  L  +   +  
Sbjct: 397 KLIDQDKLSKVLFELRQ 413


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 24/144 (16%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEP--------VKLWDRTEQ 50
            + +D+ET         + ++G         I+  +   D           +      + 
Sbjct: 34  FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIPPLITNITGISDDDV 93

Query: 51  SAMPSD---LLQYLR-DETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR-T 102
           +  P +   +  +L      + VAHN+ F+    +       I  P    +CT VLAR  
Sbjct: 94  NGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVLARTM 153

Query: 103 NGL----PSSLKNACLALNFSEHL 122
                     L +     + +   
Sbjct: 154 LDRCAVGSFKLSSLARHFHATTTP 177


>gi|224049135|ref|XP_002193489.1| PREDICTED: similar to Werner syndrome [Taeniopygia guttata]
          Length = 1223

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 25/209 (11%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +     +     A   +      ++   L+  +  +  P  L + L DET+  V     
Sbjct: 80  DIEWPPAYTKGRMAKTAVIQMCVTEDKCYLFHVSSMAGFPKGLKRLLEDETIKKV----- 134

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKAL 131
                     G+ I   +W    +++        LK+        N      +      L
Sbjct: 135 ----------GVGIEGDQWK---LMS---DFEIKLKSFVELADVANEKLKCKETWSLNGL 178

Query: 132 IA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           +   F +  +      C+        +    Y   D  A   ++++L  +S  ++ L  +
Sbjct: 179 VKHLFGRQLLKDQSVRCSNWEQFPLNEEQKLYAATDAYAGYIVYEKLKNMSKSDQKLLSV 238

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +     G +  L  + +    +A     
Sbjct: 239 SKDATSEGVKERLASLAEEITDLASHIPD 267


>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
 gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
          Length = 383

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 45/165 (27%), Gaps = 21/165 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   A       L D        +   + + +E V+ V H +  +  +    LG D+ 
Sbjct: 39  LCLIQMA-APGVTALIDPLSPDINLAPFFRLMANEAVVKVFHAARQDIEIIV-HLG-DLV 95

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 T V A   G                           + +   G+        T 
Sbjct: 96  PHPVFDTQVAAMVCGFG------------------DSVSYDQLVQRITGARLDKSSRFTD 137

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             H        +Y   DV    E+++ L      E     L++ +
Sbjct: 138 WRHRPLSDKQLDYALADVTHLIEVYQHLSAELARENRAHWLNEEM 182


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVLA--RTN 103
             +  D+++ L     + VAHN  F+       LG     +       +CT  LA     
Sbjct: 70  GDIAHDVMELLA--GRVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTMKLARRYLP 127

Query: 104 GLPSSLKNACLALNFS 119
           G   SLK+ C +   +
Sbjct: 128 GAGRSLKDCCDSFGLN 143


>gi|304396540|ref|ZP_07378421.1| DNA-directed DNA polymerase [Pantoea sp. aB]
 gi|304356049|gb|EFM20415.1| DNA-directed DNA polymerase [Pantoea sp. aB]
          Length = 784

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D      +L     +  +   L
Sbjct: 150 LKWVSLDIETTQHGELYCIGLEG-CGQRQVYMLGPANGDASTLDFELIYLDSRPQLLEAL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
            Q+    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 209 NQWFADHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLRLGR 248


>gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio
           rerio]
          Length = 1361

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 37/182 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D+E   P    K      A             ++   L+  +  S  P  L  +L DE 
Sbjct: 69  FDLE--WPPSFTKGKTKKVAM------VQLCASEDKCYLFHISSMSGFPPGLKMFLEDEN 120

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS------SLKNACLALNFS 119
           +M V      ++  +K     DI  K  +    L+             SL      L   
Sbjct: 121 IMKVGVGIEGDK--WKLLSDYDIKLKNIVD---LSDLANEKLRCCEKWSLDGLVKHL-LK 174

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           + L K +                    C+  +     +    Y   D  A   ++++L  
Sbjct: 175 KQLFKDK-----------------LVRCSHWDDFSLTEDQKRYAATDAYAGLLIYQKLQE 217

Query: 180 LS 181
           + 
Sbjct: 218 MI 219


>gi|157368976|ref|YP_001476965.1| DNA polymerase II [Serratia proteamaculans 568]
 gi|157320740|gb|ABV39837.1| DNA-directed DNA polymerase [Serratia proteamaculans 568]
          Length = 787

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDL 57
           +  + +DIET +   L  + +     Q  + +   A        +D      +  M   L
Sbjct: 152 LKLVSLDIETTAHGELYSIALEG-CGQRQVYMLGPANGGNEALDFDLEYCVSRPQMLERL 210

Query: 58  LQYLR--DETVMCVAHNS-LFERILFKKT---LGIDIPSKR 92
            Q+L   D   + +  N   F+  + +K      I +   R
Sbjct: 211 NQWLERHDPDAI-IGWNLVQFDLRVLQKHAERYQIPLKLGR 250


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 70/281 (24%), Gaps = 42/281 (14%)

Query: 3   KLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT------- 48
            +  D+ET         + ++G         I       D +   P K+ + T       
Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAEFETFIDIDKNVPAKITEITGINTSML 447

Query: 49  ----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLAR 101
               +  A     + ++ D   + VAHN+ F+    +  L    I+      + T  L+R
Sbjct: 448 TGAPKLKAAIERFIDFIGDG--VLVAHNADFDYGFLRTALQKLEINRKEYTVLDTLALSR 505

Query: 102 TNG---LPSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSID--SPPYDCTRA 150
                     L             +           + L         D  S   D    
Sbjct: 506 ALIKDSKNYKLNTLAEYFSVELDDHHRALADADATAEILKKLLAIIEKDDNSNLKDINDY 565

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                W+    +            K+ +        +  LD        RI    +L+ +
Sbjct: 566 ISKIDWKDLRPFHA----VLLAKNKKGLKNLYKLVSISHLDNFYRKP--RILKSKLLQHR 619

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           + +          I +         +        L+    +
Sbjct: 620 KGLLIGSACESGQIYQAFI--NNRPKNEIKKIAKLYDYLEL 658


>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
          Length = 680

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 44/175 (25%), Gaps = 25/175 (14%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
             +       Y+      L   +   +   L D          L   L +  +  V H  
Sbjct: 140 LDVEHHSTHTYSGLT--CLVQLSTGSKD-YLIDSLALRQDMHLLAPVLSNPRICKVIHGG 196

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHLTKMEEGKALI 132
             + +  ++  G+ +       T    +  G    SL                      +
Sbjct: 197 GNDAVWLQRDFGLFL--VNVFDTEKACQVLGYHQRSLGAL-------------------L 235

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
            RFC    D                   +Y +RDV+    +  RL      E+ L
Sbjct: 236 QRFCGIQADKSLGQRADWRRRPLSAELIDYARRDVQHLLTIADRLGHELLAEQGL 290


>gi|254581264|ref|XP_002496617.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
 gi|238939509|emb|CAR27684.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
          Length = 1239

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 53/479 (11%), Positives = 115/479 (24%), Gaps = 85/479 (17%)

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244
            + +    T     +    DL+ K +   A+  +  DEDI++             A    
Sbjct: 521 WEGYPTIWTSCGWCFATPADLMDKFK---AKNYRVADEDIIETYRSETNGMCPGAADNQV 577

Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL-----NRLASSGSAILKL-----NT 294
           LF    I   +  +    ++LS   I    K ++       R A   ++           
Sbjct: 578 LFR---IPHPNGPQSACTTLLSKPYIHYFEKGILTSGSDFAREALHMNSSGSYWMAARER 634

Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           +    +    R       +        +        +         +T+           
Sbjct: 635 IMNQFNVPSSR---FPNQFNRLDGSPQTSNRDDLGIILPGIVPMGTVTRRAVENTWLTAS 691

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
                     +++ + A  G   V AD+   E  + + ++          +  +I+  T 
Sbjct: 692 NAKENRIGSELKTQVKAPKGYSFVGADVDSEELWIASLVSD---------SVFNIHGGTA 742

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
                    K             L                  G  ++  +Q +K  +   
Sbjct: 743 IGWMCLEGTKNEGTDLHTKTAQILGCN--RNEAKIFNYGRIYGAGVKFATQLLKKFNPSL 800

Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533
             E+A+     + +       + K+                    + W            
Sbjct: 801 PDEEAQGIANQLYENTKGKIQRSKIF------------------KKFW------------ 830

Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592
                                +  +   L S             C    +   + +R  T
Sbjct: 831 -----------------FGGSESILFNKLESIAEQDEPRTPVLGCGITFSLMKRNLRTNT 873

Query: 593 YGGKLTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           +        +Q+   D   +LC  M            + +++HDEI     D   +   
Sbjct: 874 FLPSRINWTIQSSGVDYLHLLCCSMNYLIATYHIKARLCISIHDEIRFLVADEDKYRAS 932


>gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 25/142 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT---------------LCAYAWDD-EPVK 43
           +  + ID ET + Q      V  A+ E+  +                    A     P  
Sbjct: 45  LKTIAIDFETANEQRGSACSVGLAWIEEGRVIRVEERLIRPREMRFSGMNIAIHGIRPED 104

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLA 100
           + D  E   +  +     R      +AHN+ F+  +++ +L +     P   ++C+  +A
Sbjct: 105 VEDAPEFPEVMDEFHDDFR--GATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 162

Query: 101 RTNGLP---SSLKNACLALNFS 119
           +          L      L   
Sbjct: 163 QRIWPHFLSHRLNLIAEHLGLR 184


>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
          Length = 181

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 13/102 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E  S +    +            L   + +     + D  +       L +   D
Sbjct: 62  IGVDLEHHSDRSYRGIT----------CLMQISTEKTD-YIVDTLQLWDHLQPLNEVFCD 110

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
            T++ +   +  + I  ++  GI +       T   A   G 
Sbjct: 111 PTIVKIFQGADSDVIWLQRDFGIYV--VNLFDTFQAASLLGF 150


>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 900

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNGL 105
            +  ++ + L+D   + VAHN  F+    KK      ID   K+ + T  L   A     
Sbjct: 73  EIAQEIYKQLKD--RVFVAHNVDFDLNFIKKAFQNCNIDFKPKKVLDTLELFKIAYPTDK 130

Query: 106 PSSLKNACLALNFSEHL 122
              L     A +     
Sbjct: 131 SYQLSELAEAHDIPLDN 147


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 36/141 (25%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58
           +D+ET        +    V+    +  +        ++        E+   P  +     
Sbjct: 25  VDVETTGLARDDRIISAAVYRLDARGEV--------EDHWYTTVNPERDPGPVWIHGLTS 76

Query: 59  QYLRDE---------------TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
           + L                    + VAHN++F+  +  +     G + P ++ +CT  L+
Sbjct: 77  EALEGAPLFHEVAGEFAARLTGRVLVAHNAVFDWSMIAREYARAGQEPPVRQRLCTIALS 136

Query: 101 RTNGLP---SSLKNACLALNF 118
           +   LP     L+        
Sbjct: 137 KALALPLPNHKLETLAAHFGV 157


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
          Length = 1528

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
           D      +   + ++    E  + VAHN+ F+    +   K   + +     + T  LAR
Sbjct: 491 DVDNAPELEDVMKRFKEWSEDCILVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLALAR 550

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
                       +  N++   T  E+ K  + RF
Sbjct: 551 VL-YHHQY---GVYWNYATDATIDEKFKRKMKRF 580


>gi|260466883|ref|ZP_05813067.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
 gi|259029385|gb|EEW30677.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
          Length = 383

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 44/165 (26%), Gaps = 21/165 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   A       L D            + + +E V+ V H +  +  +    LG D+ 
Sbjct: 39  LCLIQMA-APGVTALIDPLSSDIDLRPFFKLMANEAVVKVFHAARQDIEIIV-HLG-DLV 95

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                 T V A   G                           + +   G+        T 
Sbjct: 96  PHPVFDTQVAAMVCGFG------------------DSVSYDQLVQRITGARLDKSSRFTD 137

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
             H        +Y   DV    E+++ L      E     L++ +
Sbjct: 138 WRHRPLSDKQLDYALADVTHLIEVYQHLNAELARENRAHWLNEEM 182


>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 25/141 (17%)

Query: 4   LFIDIETRSPQP---LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQS------ 51
           + +DIET        + ++    Y +  V+   +   +     PV +   T         
Sbjct: 18  VSVDIETTGLGDSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQLVAD 77

Query: 52  -----AMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN 103
                 +    L++      + +AHN+ F+          LG++      I T   +R  
Sbjct: 78  APTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFSRAL 137

Query: 104 GLP-----SSLKNACLALNFS 119
                     L          
Sbjct: 138 LPRPQVQNHRLGTLAHHFGIK 158


>gi|86153106|ref|ZP_01071311.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613680|ref|YP_001000809.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843991|gb|EAQ61201.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249133|gb|EAQ72094.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 264

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 16/187 (8%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILF-KKTLGIDIPSKRWICTSVLART 102
            D   +  M  +   ++ +     V+ N   F+  +   + L  ++ +  ++ T   +  
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDT--QSDK 136

Query: 103 NGLPSS----LK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                +    LK  +   +L  +    K++   +++    K   D    +  +  +    
Sbjct: 137 WNNYKTRFSELKHCDLLESLGSNGRGIKLDTLCSMVGLPGKY--DVHGDEVMKLFYENEL 194

Query: 157 QLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTIND--RGYRIDLDLVLKLQEL 212
           +   EYC+ DV  T  LF +  LI  +  E D       + D  R  + D        + 
Sbjct: 195 EKIYEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKA 254

Query: 213 IAQERKK 219
              E  K
Sbjct: 255 CESEISK 261


>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
          Length = 181

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   + D     + D  +       L +   D  ++ +   +  + I  ++  GI +   
Sbjct: 80  LMQISTDKTD-YIVDTLQLWDHLQPLNEVFCDPKIVKIFQGADSDVIWLQRDFGIYV--V 136

Query: 92  RWICTSVLARTNGLPSSLKNACLALNF 118
               T   A   G     K+    L  
Sbjct: 137 NLFDTFQAATLLGFEK--KSLSFLLQH 161


>gi|195500059|ref|XP_002097212.1| GE24622 [Drosophila yakuba]
 gi|194183313|gb|EDW96924.1| GE24622 [Drosophila yakuba]
          Length = 583

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 59/542 (10%), Positives = 121/542 (22%), Gaps = 89/542 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  D E      +   G         + L   +       L+       +P DL   L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHRGLCALFRLCHMKQIPKDLRDLL 127

Query: 62  RDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            D+ V+ V         + I      G+ +           A T      L+  C+    
Sbjct: 128 EDDAVIKVGVAPQE---DAIKLSHDYGVGV-----------ASTLD----LRFLCVMAGH 169

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK                 C+            +Y   D      ++++L 
Sbjct: 170 KP----EGLGKLSKTHLNYTLDKHWRLACSNWEAKNLEPKQLDYAANDALMAVAIYQKLC 225

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
                             +  ++D   +    E             V  T G   +    
Sbjct: 226 RDLQP---------KYFWQRVQLDDHSLRNKFEPFLD---------VDFTKGFSLNPTGG 267

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                                    +                R  ++ +     N L +A
Sbjct: 268 GVTHSK---------GSTQLKNNNWLSKKQP----------YRQMATRTKDFYDNCLLQA 308

Query: 299 VSSDGRLRGTL-----QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
              DG L  T+      +Y +   G           L  +     +           E  
Sbjct: 309 --PDGELLCTIDRRKASWYLSQNLGTLINEEPFTVRLNFEPAGRAVGDVGRYYQTPKENQ 366

Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413
               G     +R  ++    +K            + +  + +   +    +         
Sbjct: 367 CVVCGDRDAYIRKNVVPREYRK-------HFPLVMKSHTSHDVLLLCPTCHQLSNISDLR 419

Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473
            +         +  +   G V           +       H G  +    +     +  +
Sbjct: 420 VR-SKLADQCEAPFKHEDGSVKFHDDPQLKRVQSAGKALLHHGAKIPAAKKAEMQQTLLD 478

Query: 474 DWEQAESHHLWMQDQYPEFAV--KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531
            +         +  Q        ++       E V + +R K  G+++L +   E F   
Sbjct: 479 YYTDQTDITEELLQQAANVEYRVENTDYCQHGERVVQQYRDKFGGLVELERLWREHFLHT 538

Query: 532 VQ 533
           +Q
Sbjct: 539 MQ 540


>gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
 gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 40/152 (26%), Gaps = 39/152 (25%)

Query: 1   MSKLFIDIET-----RSPQPLP-----------------KVGVWAYAEQAVITLCAYAWD 38
           M+   +D ET      S   +                  K   +  A    I     A  
Sbjct: 1   MNFTALDFETANHEKHSAVSIALAVVRDNQVVDEFYSLIKPETYFSARNTAIHGITAA-- 58

Query: 39  DEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRW 93
                  D  +    P   D++  L  E  + VAHN+ F+  + K       I  P    
Sbjct: 59  -------DVAQAPKFPEIWDMIAPLFTEDKLVVAHNAAFDNGILKGTLDYYDIAEPHYML 111

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEHL 122
           + T   +R          L      L  +   
Sbjct: 112 LDTVRSSRQLFPDFKNHKLNTVAQNLGITLDH 143


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 43/152 (28%), Gaps = 32/152 (21%)

Query: 2   SKLFIDIETRSPQPL-PKVGVWAYAEQAVITLC--AYAWDDEPVKLWD------------ 46
            ++ +D ET     L          E   + L    Y  ++  + +              
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 47  ------RTEQSAMPSDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRW-- 93
                   ++         +L   +   + + HN+ F+        + L +++ +     
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLI-HNAPFDVGFMDYEFRKLNLNVKTDDICL 124

Query: 94  -ICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
              T  +AR    G  ++L   C  L      
Sbjct: 125 VTDTLQMARQMYLGKRNNLDALCERLGIDNSK 156


>gi|195342678|ref|XP_002037927.1| GM18533 [Drosophila sechellia]
 gi|194132777|gb|EDW54345.1| GM18533 [Drosophila sechellia]
          Length = 3967

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 16/227 (7%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 3208 NTSGLAASAQNLEQRWKNVCSQSAERKARILSIWNLLQQLIKLTAEHKNWLGKQESQIAG 3267

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     +  + + +K+L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 3268 FERDQKSHSKHKLEERQKELRAKLEELESQSV-NLRQLEQIYAKLTMSAGVEPENIQKLT 3326

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K ++            + + L +A+  D +L           T   
Sbjct: 3327 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 3371

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 3372 NAIQKTLEQLPSAEDQQTSKAEPKAVLQRLESLEKKLQDAQQHVQQA 3418


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 27/142 (19%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVK-------------- 43
           S +  DIET         + ++G     E  V+   +   + E +               
Sbjct: 412 SYVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYM 471

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA 100
           + D  +   +    + ++ D   + VAHN+ F+    KK     GI       + T  L 
Sbjct: 472 VKDAPKIEEVLPKFIDFIEDS--ILVAHNANFDVSFIKKNCKDFGIHFN-NPILDTIPLC 528

Query: 101 RTNGL---PSSLKNACLALNFS 119
           +          L      L   
Sbjct: 529 KFLYPELKRYKLNVVAKHLGIP 550


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 66/300 (22%), Gaps = 58/300 (19%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG----IDIPSKRWICTSVLARTNGLP 106
                 + Q  ++   + VAHN+ F+     +        ++  +  I T  ++R     
Sbjct: 471 EEAAIKIKQIFQNS--ILVAHNARFDYGCLVEFFKELELYELE-QPVIDTLEVSRFLAPT 527

Query: 107 ---SSLKNACLALNFSEHLTKMEEGKA---------------LIARFCKGSIDS------ 142
               +LK        +       E                  LI    K   D       
Sbjct: 528 QKRHNLKELAK---NASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLNSLNQV 584

Query: 143 ----PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
                 +        +   +                             +      N+  
Sbjct: 585 GSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVSLSNTDNFLSKPLLFYDKILPSNNLL 644

Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258
           +         ++ L       L+  I K     I +        ++L     I   D+ +
Sbjct: 645 WGTSGLDSQLMEILFYNHHNDLETFIKKFDFIEIPTPSS----FIHLIKRNKIKKEDIIK 700

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318
           G               K +I          +         ++ + ++   +  Y     G
Sbjct: 701 G--------------LKLVIELARKHKKLIVASSE--PRYINKEDKIFHLVYIYAKGVGG 744


>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
 gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 51/232 (21%), Gaps = 40/232 (17%)

Query: 2   SKLFIDIETRS----PQP--------------LPKVGVWAYAEQAVITLCAYAWDDEPVK 43
            +L +D ET                       L    +  Y             D E V 
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVG-----DSENVH 301

Query: 44  LW--DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDI-PSKRWI 94
               D  +   +  ++   L    +    +AHN+ F+        K+   + +       
Sbjct: 302 GISDDFLKDKPLYQEIADTLFAYLKGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAVT 361

Query: 95  CTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALI---ARFCKGSIDSPPYDCTR 149
            T  +A++       SL          E   +       +          +       + 
Sbjct: 362 DTLAMAKSKHPGQKNSLDALVRRY---EIPQRDRTFHGALLDAEILADVYLAMTGGQVSF 418

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                +         +      EL        + E     + Q     G   
Sbjct: 419 DMDALSHSEQQNGQSQRQALDIELAVIQPSAEELEAHETWVKQYQEKHGTPC 470


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 44/176 (25%), Gaps = 42/176 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK------------------------- 43
           ET     +   G+ A     +I L A    D  +                          
Sbjct: 425 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELTGITD 483

Query: 44  --LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSV 98
             + D  +   +    + ++ D T+   AHN+ F+          +G+       I T  
Sbjct: 484 EMVKDAPDVEEVLRRFIDWVGDSTLA--AHNASFDIGFLNAGLAKMGLGKVINPVIDTLE 541

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           LAR          L   C         +          G  L+    +       Y
Sbjct: 542 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEERGILY 597


>gi|322699619|gb|EFY91379.1| DNA polymerase gamma [Metarhizium acridum CQMa 102]
          Length = 1090

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 45/415 (10%), Positives = 104/415 (25%), Gaps = 28/415 (6%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
                 L++S    +M +GK         +    P        +            +V  
Sbjct: 407 DPWMKQLDWSGQEVRMVKGKRKDDPPRPAARQKKPGMPKWYKDLFP----KNDSPINVTV 462

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD---LVLKLQELIAQERKKLDEDIVK 226
              +   L+ L+     L+  D+         D        ++ +    E +    D  +
Sbjct: 463 RTRIAPLLLRLAWDGHPLFWSDKYGWTFRVPRDEAAKYNAKQMVQCTFDETELALRDDRE 522

Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDL--VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
                +       A          +            +       +       I  R   
Sbjct: 523 HYYFKLPHKDGPTARCANPMAKGYLRYFETGTLSSEYEYAKEALEMNASCSYWISARDRI 582

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
               ++    + +  +S  R          ++    S     PQ +P    +   +  T 
Sbjct: 583 MSQMVVYDEDIPKGQASRRRR---------TQPKADSHGFILPQVIPMGTITRRAVENT- 632

Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404
                              +++ + A  G   V AD+   E  + + + G+        N
Sbjct: 633 ----WLTASNAKKNRVGSELKAMVKAPKGYCFVGADVDSEELWIAS-LVGDATFKIHGGN 687

Query: 405 GEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460
                     KA  T +   +       R   KV      Y  G K   T+       L 
Sbjct: 688 AIGFMTLEGTKAAGTDLHSRTAGILGITRNDAKVFNYGRIYGAGLKFAATLLRQFNPSLS 747

Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           +      ++  + + +  +++   + ++       +  +    E   +  R +  
Sbjct: 748 ERQTMEVASKLYANTKGTKTNRKVIYNKPFWRGGTESFVFNKLEEFAEQERPRTP 802


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 38  DDEPVKLWDRT----EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDI 88
           D  PV +   T      + +  D+     +  +  + VAHN+ F+  +  +       + 
Sbjct: 69  DPGPVWIHGLTRETLSDAPLFPDIATAFAERLDGRVLVAHNAAFDWSMIAREFARSKTEA 128

Query: 89  PSKRWICTSVLARTNGLP---SSLKNACLALNF 118
           P ++ +CT  L++  GLP     L+        
Sbjct: 129 PVRQRLCTIALSKELGLPLANHKLETLAAHYGV 161


>gi|302421258|ref|XP_003008459.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261351605|gb|EEY14033.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 586

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 12/94 (12%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             L  D+E     ++S  P   V +   A  + I L         V L+   +   M   
Sbjct: 185 KVLGFDLEWQPSASKSSGPRRNVSLIQLASPSRIALF-------HVALFPGADDDLMAPT 237

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
             Q + D  V     N   +    +    +    
Sbjct: 238 FRQIMEDPDVTKAGVNIKGDCTRLRNWFDVGTRG 271


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 13/164 (7%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           +E    V HN  F+  + KK  G +      I T        +   L + C   +     
Sbjct: 79  NEDTTIVGHNIKFDLAMLKK-SGFNF-IGEIIDT------LRVTKHLVSECEQFSLQFLR 130

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
            +++  K                D T A ++  + L  +  ++  + + E          
Sbjct: 131 YELKLYKEEKELLQ---AHHALSDATIAKNLYEYLLEIQPKEKLAKLSFENVLLSKFGFG 187

Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                ++ +  + DRGY     ++  + +L    R  ++  + +
Sbjct: 188 KYNGRYIEEICMCDRGYL--DWMLANILDLDEDLRYSIEYYLRE 229


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 44/176 (25%), Gaps = 42/176 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK------------------------- 43
           ET     +   G+ A     +I L A    D  +                          
Sbjct: 417 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELTGITD 475

Query: 44  --LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSV 98
             + D  +   +    + ++ D T+   AHN+ F+          +G+       I T  
Sbjct: 476 EMVKDAPDVEEVLRRFIDWVGDSTLA--AHNASFDIGFLNAGLAKMGLGKVINPVIDTLE 533

Query: 99  LARTNGL---PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPY 145
           LAR          L   C         +          G  L+    +       Y
Sbjct: 534 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEERGILY 589


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 31/138 (22%), Gaps = 60/138 (43%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D ET    P              +                      +P +++  L D  
Sbjct: 280 FDTETTGLLPHKD----------EVVQIG---------AVRVLNGRIVPGEVMDQLVDPG 320

Query: 66  VMC-------------------------------------VAHNSLFERILFKKT---LG 85
           +                                       VAHN+ F+    ++    +G
Sbjct: 321 IPIPPSSTKVHQVSDAMVRGQPDIAEAGRRFHRFAKGSVIVAHNAPFDMAFLRRHRNRMG 380

Query: 86  IDIPSKRWICTSVLARTN 103
           ++      + T +L+   
Sbjct: 381 VEWD-HPILDTVLLSAVL 397


>gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952]
 gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 31/145 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLW--------- 45
           M+ + +D ET      S   L  V V      + I    Y+    E    W         
Sbjct: 1   MNFIAMDFETANHQRHSACSLALVMV----RDSKIVGEYYSLIQPETSFFWRNIQIHGIK 56

Query: 46  --DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
             D       P     + QY  +   + +AHN+ F+  +         ++ P    + T 
Sbjct: 57  PQDVKTAPKFPEVWESIAQYF-NPYSLIIAHNAPFDNGVLAGCLDYYNLEQPHYLTLDTV 115

Query: 98  VLAR--TNGLP-SSLKNACLALNFS 119
             +R     LP   L   C  L+  
Sbjct: 116 RTSRKFYQNLPNHRLNTVCGYLDIP 140


>gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 69  VAHNSLFERILFK--KTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
           VAHN+ F+   ++    L  +   + + CT +L+R         SL N    L+    
Sbjct: 88  VAHNASFDSKFWQAELALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPST 145


>gi|188995460|ref|YP_001929712.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
 gi|188595140|dbj|BAG34115.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 2   SKLFIDIETR-SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60
             +  D ETR S     +  V             +  +       D      +P +L Q 
Sbjct: 42  RTIGFDTETRPSFVRGARPSVALMQMSTETDCFLFRLNM-----ID------IPEELQQL 90

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPS 90
           L +  ++ V  +   +  + ++   I+   
Sbjct: 91  LENPGILKVGLSLSDDMTVIRRRKPIEPAG 120


>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus halodurans C-125]
 gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 942

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 39/152 (25%), Gaps = 39/152 (25%)

Query: 2   SKLFIDIETRS-----PQPLPKVGV-----WAYAEQA---------------VITLCAYA 36
             + IDIET          + ++G          E                  +T  +  
Sbjct: 4   RFVVIDIETTGQSVAQGDRIIEIGAVVIEDEEAVESFCTLVNPERSIPPFIEELTGIS-- 61

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRW 93
             DE VK            +L+  L     + VAHN  F+    +K     G        
Sbjct: 62  --DEMVKGAPTFH--QCIPELMSMLE--GGVFVAHNVHFDLSFLQKLLEHEGYGPLLVPI 115

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEHL 122
           I T  L+R          L      L      
Sbjct: 116 IDTVELSRILLPTEESYKLSALTEQLGLEHEN 147


>gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 43/153 (28%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMP 54
           M  +  +D ET    P          E AVI L          ++ D           +P
Sbjct: 1   MQTVAVLDFETTGLSPNLG---DRATEIAVILL-------RDGQIVDRYQSLMNAGRRIP 50

Query: 55  SDLLQY--LRDE---------TVMC-----------VAHNSLFERILFKKTLG-IDI-PS 90
           SD++    + ++          VM            VAHN+ F++  ++  LG +D+   
Sbjct: 51  SDVVALTGITNDMIASAPPAAKVMKEAAAFVGKHAVVAHNAGFDKRFWQAELGRLDVSAE 110

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFSE 120
             + CT ++AR          L +    L   +
Sbjct: 111 HAFACTMLVARRIYPDARSHRLSSLAEMLQLPK 143


>gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 69  VAHNSLFERILFK--KTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
           VAHN+ F+   ++    L  +   + + CT +L+R         SL N    L+    
Sbjct: 89  VAHNASFDSKFWQAELALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPST 146


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           1313]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 92/333 (27%), Gaps = 54/333 (16%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT------- 48
            +  DIET         + ++G     E  ++   +   + E   P  +   T       
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMV 488

Query: 49  -EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
            +   +   L ++L    T   VAHN++F+        + +  ++     I T  L+R  
Sbjct: 489 SDAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRNVD-NPVIDTLELSRQM 547

Query: 104 GL---PSSLKNACLALNFS---------------EHLTK---MEEGKALIARFCKGSIDS 142
                   L      L  S               E   K   +   K +       ++  
Sbjct: 548 FPELKKHKLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTIDDIQNVFE 607

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             ++  +AN   A  L   Y         ++  +       +R        +  R   I 
Sbjct: 608 GCWNYQKANSYHAIILVKNYVGLRNL--YKIVSKTHLEYFHKRPRLPRKLLMMHREGLIL 665

Query: 203 LDLVLK-------LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI----TGI 251
                        L+     E  ++ +    L    + ++R                   
Sbjct: 666 GSACEAGELYRAILENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDLKNINR 725

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +V + E   K +++  ++  +     + R   
Sbjct: 726 KIVALGEKYNKPVVATCDVHFMDPQDEVFRRIL 758


>gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605]
 gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 25/114 (21%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAW-------DDEPVKLWDRTEQSA 52
           L ID ET    P     +        +     L   ++         EP+          
Sbjct: 52  LIIDTETSGLDPQQDQCLELGCILFDVPSRSVLAQQSFLLPVDSNAAEPINRIPAAVTRR 111

Query: 53  MPSDLLQY------LRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTS 97
            P    +       L D   + VAHN+ F+R  F    G+ +       W+CT 
Sbjct: 112 -PQPWREALVWFEHLLDAADLLVAHNAAFDRQWF----GLGVVPATATPWLCTM 160


>gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 178

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 67  MCVAHNSLFERILFKKT---LGIDIPS-KRWICTSVLARTN--GLPSSLKNACLALNFS 119
           + VAHN++F+  + K+      I+     R++CT  + R    G+   L   C     +
Sbjct: 82  LLVAHNAVFDMGVLKRCLRDYRIEWKPHVRYLCTVQMGRRIIPGMSHKLNVLCDYYGIN 140


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---I 86
           D  PV +   T            +  +L   L D   + VAHN+ F+  +  +      +
Sbjct: 64  DPGPVWIHGLTSDVLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASV 121

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
             P ++ +CT  LA+   LP     L +       
Sbjct: 122 VAPVEQRLCTIALAKELRLPLPNHKLASLAAHFGV 156


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---I 86
           D  PV +   T            +  +L   L D   + VAHN+ F+  +  +      +
Sbjct: 62  DPGPVWIHGLTSDVLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASV 119

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
             P ++ +CT  LA+   LP     L +       
Sbjct: 120 VAPVEQRLCTIALAKELRLPLPNHKLASLAAHFGV 154


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---I 86
           D  PV +   T            +  +L   L D   + VAHN+ F+  +  +      +
Sbjct: 62  DPGPVWIHGLTSDVLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASV 119

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118
             P ++ +CT  LA+   LP     L +       
Sbjct: 120 VAPVEQRLCTIALAKELRLPLPNHKLASLAAHFGV 154


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
           thermocellum ATCC 27405]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 92/333 (27%), Gaps = 54/333 (16%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT------- 48
            +  DIET         + ++G     E  ++   +   + E   P  +   T       
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMV 488

Query: 49  -EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
            +   +   L ++L    T   VAHN++F+        + +  ++     I T  L+R  
Sbjct: 489 SDAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRNVD-NPVIDTLELSRQM 547

Query: 104 GL---PSSLKNACLALNFS---------------EHLTK---MEEGKALIARFCKGSIDS 142
                   L      L  S               E   K   +   K +       ++  
Sbjct: 548 FPELKKHKLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTIDDIQNVFE 607

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
             ++  +AN   A  L   Y         ++  +       +R        +  R   I 
Sbjct: 608 GCWNYQKANSYHAIILVKNYVGLRNL--YKIVSKTHLEYFHKRPRLPRKLLMMHREGLIL 665

Query: 203 LDLVLK-------LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI----TGI 251
                        L+     E  ++ +    L    + ++R                   
Sbjct: 666 GSACEAGELYRAILENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDLKNINR 725

Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284
            +V + E   K +++  ++  +     + R   
Sbjct: 726 KIVALGEKYNKPVVATCDVHFMDPQDEVFRRIL 758


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 26/137 (18%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITL-CAYAWDDEPV---KLWDRTE----- 49
            + +D+ET         + ++G         +    A   D       ++   T      
Sbjct: 59  FVVVDLETTGGSADDDRITEIGAVKIRG-GEVLGEFATLVDPGRAIPPQIVALTGITTAM 117

Query: 50  --QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRW---ICTSVLART 102
              +    ++L    +     + VAHN+ F+    +K+         +   +CT V+AR 
Sbjct: 118 LYDAPRIEEVLPAFAEFARGTVLVAHNARFDMGFLRKSAARMRLPWPFSTSLCTVVMARR 177

Query: 103 N-----GLPSSLKNACL 114
                      L     
Sbjct: 178 ILSRQEAPTVKLSALAE 194


>gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 69  VAHNSLFERILFK--KTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
           VAHN+ F+   ++    L  +   + + CT +L+R         SL N    L+    
Sbjct: 88  VAHNASFDSKFWQAELALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPST 145


>gi|196012971|ref|XP_002116347.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
 gi|190580938|gb|EDV21017.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
          Length = 1146

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 92/355 (25%), Gaps = 37/355 (10%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP    +  +  + ++A     + A         +++ I A  G   V AD+   E  + 
Sbjct: 771  LPPVAPAGTVTRRAVEATWLTASNAKA-NRVGSELKAMIRAPPGYHFVGADVDSQELWIA 829

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ----RAIGKVMELALGYQGGA 445
            A  A   +                 K+  T +   + E     R   K       Y  G 
Sbjct: 830  ALYADARFGRTHGCTAIGWMTLQGKKSQGTDLHSKTAETVGISRDQAKTFNYGRIYGAGL 889

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQYPEFAVKDKLIGTACE 504
               + +       +     + K+   +   +    +       +  +    D +      
Sbjct: 890  NYAQRLMRQFNPSMTLEDASDKAKILYASTKGITIYKLTRKGKKILQKLDPDTI------ 943

Query: 505  LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
             +   W      +     ++        +    I ++    +             I L  
Sbjct: 944  -LDDDW------IDTTGHEILRKHLRGKKLDSYIKSKSKQWIGGSESEMFNALEAIALSE 996

Query: 565  SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNA---T 618
                           ++ A    +    Y       +VQ+ + D   ++   M+      
Sbjct: 997  K-----PKTPILECRISQALEPKVVGNAYLPSRINWVVQSSAVDYLHLILVCMRWLFEKY 1051

Query: 619  KNGYDIVLTVHDEIVSETPDTPYFSVG---TLCSLMTKNP----SWAKGLPLKAE 666
                   +++HDE+         F       + +L+T+           LPL   
Sbjct: 1052 NINGRFCISIHDEVRYLVKSEDRFRAALALQITNLLTRAMFAHKIKIYDLPLSVA 1106


>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 34/105 (32%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--------------- 45
           M  +  D+ET    P    GV    E   +       D +P  ++               
Sbjct: 13  MRFIAFDLETTGTVP----GVDQIVEIGAVRFI----DGQPEAIFATLIDPLRPIPPGAS 64

Query: 46  -------DRTEQSAMPSDLLQYLRD---ETVMCVAHNSLFERILF 80
                  D  +   +   +L    +   E V+ VAHN+ F+    
Sbjct: 65  AVNGISDDMVKGKPLIDTILPAFAEFCGEDVL-VAHNAPFDSQFL 108


>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL S4-171]
          Length = 921

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 41/149 (27%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLL--- 58
           +D+ET         G  A  E   I   A  + +              +  +P+ +    
Sbjct: 2   VDLETT--------GNQASRED-RIIQFAACFVESGKRLETYATFLNPEKPIPAFIQELT 52

Query: 59  ----------QYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
                         D         E  + VAHN  F+    ++ +   GI +   + + T
Sbjct: 53  GISPKDVKDAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDT 112

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHL 122
             LAR          L++           
Sbjct: 113 VELARIMYPGIDSYKLQDLSDEFGLGHDK 141


>gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 172

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSK-RWICTS 97
           D      +  +  +++ D T+  +AHN+ F+       L  +++    ++ICT 
Sbjct: 70  DALPLEDVLPNFRKFIGDRTI--IAHNAKFDIGFLNYYLEKMNLDPIDKYICTM 121


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 16/126 (12%)

Query: 60  YLRD-----ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLA--RTNGLP-S 107
            L D     +  + V HN +F+  +      +   +   S  W  T  ++      LP  
Sbjct: 581 ALEDFLDFSKGCVLVGHNVMFDLTITSQNLARAGSVQTLSNVWYDTLDISRRYMKDLPNH 640

Query: 108 SLKNACLALNFSEHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
            L     AL  +              A           +P     RA + +       + 
Sbjct: 641 KLSTVSAALGAAHDPSHNAMDDILATADALAALIERYVAPYETARRAAYEKLLPRLEPFA 700

Query: 164 KRDVEA 169
           +   + 
Sbjct: 701 RLLADV 706


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 21/124 (16%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLA 100
           + D+     +  ++  +L+D   + VAHN+ F+     +   I   +     +ICT    
Sbjct: 72  VIDKPYFEDIYPEVYNFLKDS--IVVAHNAKFDISFLSEVHKIVFKNNLRLHYICT---- 125

Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
                     N    +        +    +L                     +QA+Q   
Sbjct: 126 ---------DNLARRIFPEIQKKSL---SSLTNYLGINFKQKHRALSDAQATLQAFQTML 173

Query: 161 EYCK 164
           EY +
Sbjct: 174 EYLQ 177


>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 282

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 29  VITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-G 85
            I   A+A +    ++           P      L  E V+ VAHN+ F+       L  
Sbjct: 70  EIDPAAFAVNGISAEMVANAPSFGEIWPKVNK--LFHEAVL-VAHNAYFDIGFLTSELSR 126

Query: 86  IDIPS--KRWICTSVLA--RTNGLPSSLKNACLALNFS 119
           ID+P      I T  LA         +L +    L   
Sbjct: 127 IDLPPLETPVIDTLALARRYITARRYNLTSLATNLGEK 164


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 48/154 (31%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPV--KLWDRTEQS------ 51
           M  + +DIET             Y E+  IT  A   +D   V  K              
Sbjct: 1   MYTI-LDIETTG---------GKYNEEG-ITEIAIHKFDGHQVVDKFISLVNPEKDIQPF 49

Query: 52  -------------------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIP 89
                               +   +++   D   + VAHN+ F+  + +   + LG +  
Sbjct: 50  VVNLTGINNKMLRTAPKFHEVAKRIVEITEDS--VLVAHNAQFDYRILRTEFRRLGYNFE 107

Query: 90  SKRWICTSVLARTNGL---PSSLKNACLALNFSE 120
            K   CT  L++         SL     +L    
Sbjct: 108 RKTL-CTVDLSKYLLPDAESYSLGKLVRSLGIPM 140


>gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 42/172 (24%), Gaps = 15/172 (8%)

Query: 25  AEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
                + +   A+ D  + L D       +       L    +  V H+   +       
Sbjct: 98  CRHGSLCIMQLAFPD-AIYLVDAIQGGEKLMKACKPALESSYITKVIHDCKRDSEALYFQ 156

Query: 84  LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139
            GI +     + + +         G   S  +    +           G   I+   K  
Sbjct: 157 FGIKLH--NVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPR--YCG---ISYLEKKE 209

Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-LFKRLIPLSDGERDLWLL 190
           +        +    +           D       ++ +++     E  LW L
Sbjct: 210 VRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEEL-NEHSLWKL 260


>gi|213585209|ref|ZP_03367035.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 136

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 13/62 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--LQY 60
              D ET S   +           A +   ++A +                P  +   + 
Sbjct: 83  FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 132

Query: 61  LR 62
           L 
Sbjct: 133 LE 134


>gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
 gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
          Length = 168

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 28/140 (20%)

Query: 2   SKLFIDIETRSP---QPLPKVGVWAYA-EQAVIT---------LCAYAWDDEPVKLWD-- 46
             + +D ET           + + A A E   IT             ++    V      
Sbjct: 3   RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQ 62

Query: 47  RTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA- 100
                  P ++  +          VAHN+ F+R         LG+ +    W CT  L+ 
Sbjct: 63  MLAGRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLA-NPWHCTVRLSR 121

Query: 101 ----RTNGLPSSLKNACLAL 116
               R       L+     L
Sbjct: 122 RKLPRLMN--HKLETVYKHL 139


>gi|182627949|gb|ACB89111.1| gp ORF118 [Staphylococcus phage A5W]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 60/296 (20%), Gaps = 84/296 (28%)

Query: 114 LALNFSE--HLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
             +  S+      +     LI        + +              +L   Y   D +  
Sbjct: 152 EYMGLSDYAKSYTLNTAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDVC 211

Query: 171 RELFKRLIPLSDGE-------------RDLWLLDQTINDRGYRIDLDLVLK--------- 208
           R +   +I     +               L      I   G   DLD + +         
Sbjct: 212 RRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESEM 271

Query: 209 -----------LQELIAQERKKLDEDIVKLTDGI--------------------IRSSRQ 237
                        +   + +  L +  ++  +                      + S   
Sbjct: 272 AKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPSS 331

Query: 238 TYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSNITQ 272
                  ++ I GI L                             +  +   L +  +  
Sbjct: 332 GDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELKD 391

Query: 273 LAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
             K+L+      +            L   ++   R          + T R S    
Sbjct: 392 DVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNP 447


>gi|262342189|gb|ACY54605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLD 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|237731840|ref|ZP_04562321.1| ribonuclease D [Citrobacter sp. 30_2]
 gi|226907379|gb|EEH93297.1| ribonuclease D [Citrobacter sp. 30_2]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 28/112 (25%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           + +D E     T                   + L    +D + V L D      +     
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGKHVALID---PQGITDWSP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           L   LRD  +    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 62  LRDILRDTAITKFLHAGSEDLEVFLNAFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 65  TVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
               VAHN+ F+R  ++  L        + +ICT +L+R          L +        
Sbjct: 83  DAPLVAHNAAFDRKFWQAELDRAGLAAPQPFICTLLLSRRLYPQAPNHKLGSLVDFHGLP 142

Query: 120 EH 121
             
Sbjct: 143 RT 144


>gi|296004476|ref|XP_001350990.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
 gi|224591370|emb|CAD49018.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 30/148 (20%)

Query: 53  MPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNG---LPSS 108
           +P  +   L +E ++ VAH+   E+ +        +I  K      +          P S
Sbjct: 163 IPISVKNILENEEIIKVAHDIKNEKDMFLSN----NIQIKNVFD--LYNYAIDNFIYPPS 216

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L++                   L     K    S   + +        Q    Y   D  
Sbjct: 217 LQSLVKIY--------------LNKFLDKKFRLSNWLNYS------LLQEQILYAAVDAY 256

Query: 169 ATRELFKRLIPLSDGERDLWLLDQTIND 196
           A+R+++  L       +   L      +
Sbjct: 257 ASRQIYFHLDENKKKSQSYILNYILQEN 284


>gi|302671388|ref|YP_003831348.1| hypothetical protein bpr_I2032 [Butyrivibrio proteoclasticus B316]
 gi|302395861|gb|ADL34766.1| hypothetical protein bpr_I2032 [Butyrivibrio proteoclasticus B316]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 38/207 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----TEQSAMPSD 56
             LFIDIET         G+     +A +   +Y +      +          +  M ++
Sbjct: 29  KILFIDIETT--------GLSPKTSEAYLIGVSY-YQGHTWHIVQLMAETPEHEKEMLTN 79

Query: 57  LLQYLRDETVMCVAHNSL-FERILFK-----KTLGIDIPSKRWICTSVLARTNGLPSSLK 110
               LRD  ++    N   F+    +       LG                    P  L 
Sbjct: 80  FKTLLRDFKLLVHF-NGNRFDIPYLQGRFAHYELGDPFEGIDSFD----LYKKISPYKL- 133

Query: 111 NACLALNF---SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
                L      +   ++  G     ++  G +     +   +   +A +L   +   DV
Sbjct: 134 ----ILGLPDCKQKTIELYLGIDREDKYDGGKLIPVYREFVESKSPEALKLLLLHNFEDV 189

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTI 194
           +    L   +        + + L Q +
Sbjct: 190 KGMFGLLPMMR-----YLEFFNLFQNM 211


>gi|283832800|ref|ZP_06352541.1| ribonuclease D [Citrobacter youngae ATCC 29220]
 gi|291072487|gb|EFE10596.1| ribonuclease D [Citrobacter youngae ATCC 29220]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 28/112 (25%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           + +D E     T                   + L    +D + V L D      +     
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGKHVALID---PQGITDWSP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           L   LRD  +    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 62  LRAILRDTAITKFLHAGSEDLEVFLNAFG-EL-PQPLIDTQILAAFCGRPLS 111


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 32/144 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------------LWDR------ 47
           T     +   G+ A     +I L A       +                 + D       
Sbjct: 418 TYVVFDVETTGLSA-VYNTIIELAAVKVQGGEIIDRFESFANPHEPLSPTIIDLTGITDD 476

Query: 48  --TEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
              +   +   L  +       + VAHN+ F+        +  G+D  +   I T  + R
Sbjct: 477 MVADAPEIHDVLKDFKAWCGNDILVAHNAAFDMAFLDAGYQKAGMDKAANPVIDTLEMGR 536

Query: 102 TNGLP---SSLKNACLALNFSEHL 122
                     L   C   N     
Sbjct: 537 MLYPTFKNYRLNTLCKKFNIELVS 560


>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 891

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 41/174 (23%), Gaps = 28/174 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSAMPSDLLQ 59
               +D E  S +                 L   +  ++   V      +  ++   L  
Sbjct: 138 KVFAVDTEQHSLRSFLGFTA----------LIQISTHEKDFLVDTIVLHDAMSI---LRP 184

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNF 118
              +  +  V H +  + +  ++     I       T+        P  SL         
Sbjct: 185 VFSEPNICKVFHGADNDVLWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYL------ 236

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                +   G A      +      P       + +    +  Y    + A  +
Sbjct: 237 ----LETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELK 286


>gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886]
 gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 68/241 (28%), Gaps = 26/241 (10%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D  E   + S L   L DE+V+ V H    +  +F    G  
Sbjct: 70  PRLGLIQL-YDGETLSLIDPIELDDL-SPLWGLLTDESVVKVLHACSEDLEVFYHYAG-- 125

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G    L     +L     +  +++G+A      +   +      
Sbjct: 126 AMPTPMVDTQIMAAFLG--HGLSTGFASLVEEYLVVTLDKGEARTDWCARPLSE----KQ 179

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLI--------------PLSDGERDLWLLDQT 193
                   + L   Y +     +   +   +              P  +           
Sbjct: 180 LEYAAADVYYLLPLYNELSKRVSAAGWDEAVKQECALMASKRGKTPEPEKAYLDIKNAWQ 239

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII--RSSRQTYALRMYLFLITGI 251
           +  +   +   L         +    L+  + +L    +   + R    +    F    I
Sbjct: 240 LRPKQLAVLQKLASWRLREAQRRDLALNFVVRELHLWKMARFNIRSLDKMAEEGFDRFEI 299

Query: 252 D 252
           +
Sbjct: 300 E 300


>gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLAR--TNG 104
             +  + L ++ ++    V HN+ F+       L +     + S+  + T  LAR    G
Sbjct: 71  GDIVDEFLVFIENKR--LVIHNAEFDLSHLNNELSLLGKEKLNSENVVDTLALARDKFPG 128

Query: 105 LPSSLKNACLALNFSEHL 122
            P SL   C         
Sbjct: 129 SPISLDALCKRYRIDNSK 146


>gi|320354277|ref|YP_004195616.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122779|gb|ADW18325.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 995

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 45/226 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYL 61
            DIET   +   +VG W    +A +   + A       +    +      A+   L    
Sbjct: 799 FDIET--QRSAEEVGGW---HRAELMRVSVAVLYESCGQRFTTYTEATVGALIERLFAL- 852

Query: 62  RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSV--LARTNGLPSSLKNACLA-LN 117
                + V  N+  F+  +       D+         +  ++   G   SL       L 
Sbjct: 853 ----DLVVGFNNKRFDNKVLSAYTNRDLGLLPSFD-LLEAISGLLGYRLSLDRLAEKTLR 907

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                 K   G   +  F +G                  +    YC++DVE TR+LF  L
Sbjct: 908 VK----KEGNGLEALRWFKRG----------------EMEKLAAYCRKDVEITRDLF--L 945

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
                  R  +LL Q    +  R+ +D +  +++++ Q  + L   
Sbjct: 946 YGC----RQQYLLFQNKAGQEVRLPVDFIQSIEQILDQRERMLRAR 987


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GI 86
           D  PV +   T            + ++L + L     + VAHN+ F+  +  +      +
Sbjct: 75  DPGPVWIHGLTSDVLEGAPLFPQVAAELSERLA--GRVLVAHNAAFDWSMIAREYARAAV 132

Query: 87  DIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHL 122
             P ++ +CT  LA+   LP     L++        +  
Sbjct: 133 TAPVEQRLCTIALAKELRLPLPNHKLESLAAHFGVVQQH 171


>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
 gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 36/123 (29%)

Query: 3   KLFIDIETRSPQP----------------LPKVGVWAYAEQ------AVITLCAYAWDDE 40
            +F+D ET    P                L KV    Y+        A +        DE
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDKNLKLKKVFNQYYSVDRMSRSAAKVHGLTMDILDE 61

Query: 41  PVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWI 94
                  +          ++   L D  +  + HN  F+    K      G +   K   
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDSVI--IGHNISFDIRFLKAEFERLGPEYIPKDKF 113

Query: 95  CTS 97
           CT 
Sbjct: 114 CTM 116


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 26/139 (18%)

Query: 2   SKLFIDIETRSPQ---PLPKVGVWAYAEQAVIT--LCAYAWDDEPVKLWDRTEQSAM--- 53
           + + +D ET               A  EQ  I      +  +       D    + +   
Sbjct: 41  NVVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITF-VNPGKPIPEDVAHLTDIHDS 99

Query: 54  -----------PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLAR 101
                       + L++++ D  V  VAHN+ F+R    +   G  +    WI +  LAR
Sbjct: 100 DVADAPLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLAR 157

Query: 102 TNGL---PSSLKNACLALN 117
                     L +   A  
Sbjct: 158 IALPRMKSHRLLDLVRAFG 176


>gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917]
 gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAW----DDEPVKLWDR--TEQSAM 53
           L +D ET    P     +   A    +     L   ++    +  P +  +      +  
Sbjct: 34  LILDTETSGLDPEQDQCLEVGAILFDVPEREVLVQQSFLLPVEHNPAQAINHIAASATRC 93

Query: 54  PS------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           P         LQ L D   + VAH++ F+R  F +   +      W+CT 
Sbjct: 94  PQPWREGLRYLQALMDTADLLVAHHAAFDRQWFGR-GHLPAARAAWLCTM 142


>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
 gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
          Length = 235

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 40/159 (25%), Gaps = 42/159 (26%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYA--------EQAVITLCA 34
           M ++ +D ET    P                  L K     Y         E   +   +
Sbjct: 2   MRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPDRQVEEEAFQVHGIS 61

Query: 35  YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGID--I 88
                    L D+     +  D L Y++      V HN+ F+       F K        
Sbjct: 62  ------DEFLADKPRFHQVAQDFLNYIQ--GAELVIHNAPFDVGFIDHEFAKLGNFPKVA 113

Query: 89  PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
                  T   AR+       +L   C          ++
Sbjct: 114 DICSVFDTLAFARSKHPGQKNNLDALCKRYGIDNSHREL 152


>gi|158301896|ref|XP_321572.4| AGAP001549-PA [Anopheles gambiae str. PEST]
 gi|157012692|gb|EAA01810.4| AGAP001549-PA [Anopheles gambiae str. PEST]
          Length = 769

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 42/160 (26%), Gaps = 25/160 (15%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLF-ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
           + +P +L   L D+ ++ V   S + +  + ++   + +                    L
Sbjct: 114 NRIPQELYDLLNDDNIIKVGV-SPYEDARVLREDYRLKVE---------------STLDL 157

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           +                                    C+     +      +Y   D   
Sbjct: 158 RYMAERAGLEPLGIARLA----NEVLGLTLDKHWKVRCSDWESPELSDRQIKYAASDAHV 213

Query: 170 T----RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
                ++L  +L+P         +L+Q + +    +D   
Sbjct: 214 AVEMFKKLSYKLVPHYPWTSRKVVLEQVLEEMDCFMDQPH 253


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDD--------------EPVKL 44
            +  D+ET         + ++G      + V+   +   +               +   +
Sbjct: 451 YVVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDRFSTFVNPKIPIPYNIEQLTGIDDSMV 510

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV----LA 100
            D      +  + L++  D  VM VAHN+ F+     +     I  K + CT V    LA
Sbjct: 511 VDADTIENILPEFLKFC-DGAVM-VAHNAEFDVTFI-REKTKTILGKAFECTVVDTVSLA 567

Query: 101 RTNGLPSS---LKNACLALNFS 119
           R          L +   ALN S
Sbjct: 568 RALIPNLGKFTLDHVAKALNVS 589


>gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733]
 gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 33/152 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L  V V      ++            E    W        
Sbjct: 1   MNFIAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 55

Query: 46  ---DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICT 96
              D       P     +  Y + +  + VAHN+ F+  +    L    +    +  +CT
Sbjct: 56  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 114

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKM 125
              +R          L   C  LN        
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLDHHHD 146


>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
 gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
          Length = 382

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 42/245 (17%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D TE + M S  ++ L+D +V+ V H    +  +F+   G  
Sbjct: 49  PQLGLIQL-FDGKQLSLIDPTELTDMTS-FVELLKDTSVLKVLHACGEDLEVFQNAFG-- 104

Query: 88  IPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 + T ++A   G   S   A      L      ++                    
Sbjct: 105 CTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLGVELDKSE-------------------- 144

Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------- 193
              T        Q   +Y   DV     L+++L+     E   W   Q            
Sbjct: 145 -SRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV-NEAGWWEAVQQESDLLVSKRIR 202

Query: 194 -INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGI 251
            +N+    +D+    +L+       K L     +       +    +     L +   G+
Sbjct: 203 NVNEENAYLDIKGAWQLRPTELAILKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGL 262

Query: 252 DLVDM 256
                
Sbjct: 263 TGFKK 267


>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
 gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
          Length = 929

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 38/256 (14%)

Query: 8   IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67
           +ET S    P+  +  + +Q  +T        +P   +D    + +   +   L D   +
Sbjct: 40  LETYSTFINPEREIPPFIQQ--LTGI------KPSDCYDAPIFTDVAPIIQNLLED--CI 89

Query: 68  CVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
            VAHN  F+     + +   G  +P  + + T  LAR          L++          
Sbjct: 90  FVAHNVSFDWTFLAREMQRAGYPLPKTKKLDTVELARIIYPGIDSYKLQDLSDEFKLGHD 149

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                          +        + T    +             +     + + L    
Sbjct: 150 ---------------RPHQADSDAEVTADLLLLLLDKLENLPLPVIRKMATISQSLKNYL 194

Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
               +L    +   DR  +   D +++ + L+ +++  + E     +    +    T   
Sbjct: 195 ---PELLFELEMQKDRELKALPDELMEYRGLVIRKKPTISEPAESSSYVFPK----TAQA 247

Query: 242 RMYLFLITGIDLVDMS 257
           +  LF   G+ L   +
Sbjct: 248 KAALFEQNGLSLTKRT 263


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 34/142 (23%)

Query: 6   IDIETRSP----QPLPKVGVWAYAEQAVITLCAY------------------AWDDEPVK 43
           +D+ET         + ++G+  + +   I   +Y                  + +D+ + 
Sbjct: 9   VDLETTGNQKDYDDIIQIGI-TFVKGFEIVG-SYHSLIKTDLEIPPFIQALTSIEDQMLT 66

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL- 99
                    +  ++ + ++D   + VAHN  F+    KK      I    ++ I T  L 
Sbjct: 67  QAPYFN--EVAEEIYELMKDS--VFVAHNVAFDLTFLKKAFKKSNITYQPRKVIDTVELF 122

Query: 100 --ARTNGLPSSLKNACLALNFS 119
             A        L       +  
Sbjct: 123 KIAFPTDKSYQLSELAEYHDIP 144


>gi|323137715|ref|ZP_08072791.1| ribonuclease D [Methylocystis sp. ATCC 49242]
 gi|322397012|gb|EFX99537.1| ribonuclease D [Methylocystis sp. ATCC 49242]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 40/168 (23%), Gaps = 21/168 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A   E     D   +    +     + +  V+ V H +  +  +  +     
Sbjct: 37  PKVCVIQIA-SPEEAVAIDALSEGIDLTPFFSLMANADVVKVFHAARQDLEIIWRLA--R 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           +       T V A   G           L       K      L            P   
Sbjct: 94  LIPAPLFDTQVAAMVCGFG----EQASYLEL----VKAITRANLDKSSRFTDWSRRPLSA 145

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            + +          Y   DV   R+++  L    +    L  L   + 
Sbjct: 146 AQID----------YAIADVTHLRDIYTTLRQRLERSNRLEWLADEMQ 183


>gi|258622057|ref|ZP_05717084.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258585671|gb|EEW10393.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 2/56 (3%)

Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648
               +    +QA   DI+     N  +    ++LT HD                L 
Sbjct: 264 NNKSIRNWPLQATGADIMRRACFNLDEANIPLLLTNHDS--FLVRLDEENQDSQLE 317


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 38/154 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--------------------AYAWDDEP 41
            ++ +D ET    P    G     E   + L                      YA     
Sbjct: 8   REVVLDTETTGLDP---DGGDRVIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKI-H 63

Query: 42  VKLWDRTEQSA----MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-----R 92
               D  +       +    L+++ +   + V HN+ F+    K  L   I        +
Sbjct: 64  GITIDMLKDKPKFSEIADKFLEFIDNG--ILVIHNAGFDIKFIKMELD-RINKSYNSDFQ 120

Query: 93  WICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
            + T VLAR    G+ S+L   C   N S    K
Sbjct: 121 VVDTLVLARKKFPGVSSTLDALCRRFNISLQDRK 154


>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
 gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 61/233 (26%), Gaps = 34/233 (14%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
               +   + Y+ +A   L     +   + L D  E + M   L++ L       + H +
Sbjct: 56  IDAERASGYRYSNRAY--LIQLRREGSGIWLIDPIELTTM-QPLVEALE--GTEWILHAA 110

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL-ALNFSEHLTKMEEGKAL 131
             +         + +       T +  R  G P   L       L F+            
Sbjct: 111 TQDLPCLS---DLGLHPAALFDTELAGRLLGYPRVGLGTLVETVLGFTMLK--------- 158

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                        +     +       + EY   DVE   EL + L      +       
Sbjct: 159 ------------EHSAADWSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWAR 206

Query: 192 Q---TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241
           Q    +      +  D   +   +     ++    + +L     R ++Q    
Sbjct: 207 QEFDWLRGFEAPVRTDAWRRTSGMHRVRGRRGLAAVRELWTERDRIAQQRDVT 259


>gi|240275320|gb|EER38834.1| DNA polymerase gamma [Ajellomyces capsulatus H143]
          Length = 1084

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 55/234 (23%), Gaps = 5/234 (2%)

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              +++ + A  G   V AD+   E  + + + G+        N          K+  T 
Sbjct: 652 GSELKAMVRAPPGYVFVGADVDSEELWIAS-LVGDAQFQIHGGNAIGFMTLEGTKSAGTD 710

Query: 421 IDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   +       R   KV      Y  G K   T+       + +      +   +++ +
Sbjct: 711 LHSKTASILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETK 770

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
               +H +          +          + +A   +                       
Sbjct: 771 GEAPNHSYSISLRSSRKQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDY 830

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590
                   +          R    V    R LV    K   +      +   R 
Sbjct: 831 LHLLIISMDFLIRRFNLDARLAITVHDEIRYLVKEHDKYRAAMALQVANLWTRA 884


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 26/139 (18%)

Query: 2   SKLFIDIETRSPQ---PLPKVGVWAYAEQAVIT--LCAYAWDDEPVKLWDRTEQSAM--- 53
           + + +D ET               A  EQ  I      +  +       D    + +   
Sbjct: 9   NVVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITF-VNPGKPIPEDVAHLTDIHDR 67

Query: 54  -----------PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLAR 101
                       + L++++ D  V  VAHN+ F+R    +   G  +    WI +  LAR
Sbjct: 68  DVADAPLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLAR 125

Query: 102 TNGL---PSSLKNACLALN 117
                     L +   A  
Sbjct: 126 IALPRMKSHRLLDLVRAFG 144


>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
 gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|167945574|ref|ZP_02532648.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 5/58 (8%)

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270
             +L++   +L  G   +      +    F   G+         +  T +S+L     
Sbjct: 1   MHQLEQQAHELA-GHSFNMASPKQIGHIFFEELGLPVIAKTPKGAPSTAESVLQELAD 57


>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0012]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|196230484|ref|ZP_03129346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Chthoniobacter
           flavus Ellin428]
 gi|196225414|gb|EDY19922.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Chthoniobacter
           flavus Ellin428]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 30/176 (17%)

Query: 3   KLFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            ++ D+ET R+       G     +  +     Y+      +++       +   LL+  
Sbjct: 5   IVYFDLETQRTAND--AGGWDRKRDMGMSLGVTYSTRLGEYRIYREQRVEELVQQLLRA- 61

Query: 62  RDETVMCVAHN-SLFERILFKKTLGIDIP-SKRWICTSV-LARTNGLPSSLKNACLALNF 118
                + V  N   F+  +    +  D+P   + +   V + +  G    L         
Sbjct: 62  ----DLVVGFNVINFDYEVLMGYMAYDLPHLCQTLDLMVDIEKKLGHRLGLDAVA----- 112

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                 +  GK                D  R           EYC  DV+ T+ + 
Sbjct: 113 ---SASLGVGK-----------TGDGLDAIRWWREGRLLDIAEYCCFDVKCTKLVH 154


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0017]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 38/158 (24%), Gaps = 51/158 (32%)

Query: 3   KLFI-DIETRSPQPLPKVGVWAYAEQAVITLCAY------AWDDEPVKLWDRTEQSAMPS 55
            + I D ET         G+  + +   I   A       A                +P 
Sbjct: 506 TITIFDTETT--------GLDVFHDD--ILQIAAVKVRNGAVVPGSALSLHLESDHEIPE 555

Query: 56  DL-------------------LQYLRD-----ETVMCVAHNSLFERILFKKTLGIDIP-- 89
            L                    + L+         + + HN+ ++  +    L  ++P  
Sbjct: 556 MLGDIVNPIIEERRNQTLLPRREALQRFVDYARGTVLLGHNADYDIHILANNLQREMPET 615

Query: 90  -----SKRWICTSVLARTNGLP---SSLKNACLALNFS 119
                   +  +  L R          LK     L+  
Sbjct: 616 ALPNELSDYFDSLHLIRLLRPGLRQYKLKYLLEVLHLE 653


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4000]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|157135976|ref|XP_001663646.1| hypothetical protein AaeL_AAEL013455 [Aedes aegypti]
 gi|108870061|gb|EAT34286.1| conserved hypothetical protein [Aedes aegypti]
          Length = 339

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 26/150 (17%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL--FKKTLGIDIP 89
           L + A  D  + ++D      +P DL   L D  V  VAHN+   R++    +      P
Sbjct: 146 LLSIATPD-RIYVFDVM-WMNVPKDLRAILGDPKVRRVAHNA---RLVEDVLRHR-YQAP 199

Query: 90  SKRWICTSVLARTNGLPSSLKN---------ACLALNFSEHLTKMEEGKALIARFCKGSI 140
             +   T V        +   +             LN   +        + I    +   
Sbjct: 200 LGKCFDTLVAH--ISTTNDYDDQHELSIQECLAKYLNLPSNFF-----DSSIKFNNRPLN 252

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +S      +           +Y   +V   
Sbjct: 253 ESQRKAAAKNVAFLL--ALQDYLVHEVMLE 280


>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309B]
 gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309A]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 477 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 536


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1346]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0645]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0027]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2137]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
 gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
 gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQEGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
 gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus sp. 7L76]
 gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 153

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 69  VAHNSLFERILFKKTLGI-DIP-SKRWICTSVLARTN---GLPSSLKNACLALNFSEH 121
           VAHN+ F+R  ++  L +  +P    + CT +L+R          L            
Sbjct: 88  VAHNAAFDRKFWQAELALAGLPAPHPFACTVLLSRRLYPQAPSHKLGMLVDYHGLPRT 145


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 27/139 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAV----------ITLCAYAWDDEPVK---------LWD 46
           +D+ET    P     +   A +            +   +  +  E +          + D
Sbjct: 14  VDLETTGLNPKTSEIIEIAAIKVEGNVITEKFHTLVKPSIGFIPEHITKLTGITNPLVID 73

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
           + +   +    L++ ++   + +AHN+ F+          L   +     ICT VLA   
Sbjct: 74  KPKIEQVFPHFLEFTKNS--IIIAHNAKFDISFLNEASFQLTGKLIQNPVICTLVLANRL 131

Query: 104 GL---PSSLKNACLALNFS 119
                  SL N     N  
Sbjct: 132 FPDLKSKSLTNLAYHFNIP 150


>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0031]
 gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0312]
 gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1342]
 gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis OG1RF]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 62/245 (25%), Gaps = 73/245 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPS----- 55
            +  D ET               E  +I + A       +        +           
Sbjct: 427 YVVFDTETTGLN---------AREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVE 477

Query: 56  -------------DLLQYLR-----DETVMCVAHNSLFERILFKKT---LGIDIPSKRWI 94
                         L + L          + VAHN+ F+     +    LG+D   +  I
Sbjct: 478 LTGITNEMVAGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVI 537

Query: 95  CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            T  LAR                      K  + K L  +F    ++             
Sbjct: 538 DTLALARVLYPG----------------EKNYKLKTLTQKFSVDLVNH------------ 569

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                      D EAT ++F  ++   D +         +N    +ID+  V      + 
Sbjct: 570 ------HRALADSEATAKVFVHMLK--DAKARGIHNLLDMNHLRGQIDISRVRPFHATVL 621

Query: 215 QERKK 219
              ++
Sbjct: 622 VRNRE 626


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 31/143 (21%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVI-----------TLCAY------AWDDEP 41
            +  DIET         + ++G     E   I               +      + DD  
Sbjct: 456 YVVFDIETTGFSAVEDHIIEIGAVK-VENGKITDKYSTFVNPEVPIPFEITQLTSIDDSM 514

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRW-ICTSVL 99
           V   D  +   +    L+++ D +   VAHN+ F+    +     ++I  +   + T  L
Sbjct: 515 V--MDAPKIDVILPQFLEFVGDAS--LVAHNAGFDVGFIEQNCKNLNIEQEFVSVDTVAL 570

Query: 100 ARTNGLPSS---LKNACLALNFS 119
           AR      S   L     ALN S
Sbjct: 571 ARVLLPTLSKYKLNIVAKALNIS 593


>gi|461962|sp|P33537|DPOM_NEUCR RecName: Full=Probable DNA polymerase
 gi|578156|emb|CAA39046.1| putative DNA polymerase [Neurospora crassa]
          Length = 1021

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 74/300 (24%), Gaps = 63/300 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA--WDDEP---VKLWD--RTEQSAMP 54
             L  DIET                    T+ AYA  + D             +++  + 
Sbjct: 313 KILAFDIETFQVP----------TGNGDSTMIAYACGFYDGKKSLTYYISDFISQREMLL 362

Query: 55  SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWI----CTS------------ 97
           + +   L+ +      HN S F+     K L  +   ++ I                   
Sbjct: 363 ACIKDMLKYDKHTVYCHNFSKFDINFIIKILVQEFVVEKIISKDLDILSIKISYKFEPKK 422

Query: 98  -----------VLARTNGLPSSLKNACLALNFSEHLTKME---EGKALIARFCKGSIDSP 143
                      +      LP SL       N      K       K  +           
Sbjct: 423 KGGKAERHTITIADSCRLLPGSLDKLAKDHNIITKKGKFPYKFVNKDNLEYVGLLPDYEY 482

Query: 144 PYDCTRANHVQAWQLFGEY-CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY--- 199
             D  +   +  ++    Y  K  +     ++          + L+ L   +++  Y   
Sbjct: 483 YIDPKKGEMITLFEWAAMYTNKWSMRKETIIYLE-----KDIKALYQLMMEMSNNTYSTF 537

Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259
           RI++  V     L     + +        +    S          L L    +   ++  
Sbjct: 538 RINITRVKTASALAFLVYRTIFLPNEVEEENETNSPNN------ILSLFDKKEEKKLTPK 591


>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4244]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQEGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1341]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
 gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 41/168 (24%), Gaps = 20/168 (11%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A D E   +        M   L   + +E V+ V H    +  +     G  
Sbjct: 40  PELCLVQIADDKEAAAIDPLAPGLDMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKT 99

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T +                           + G + +     G         
Sbjct: 100 --PHPIFDTQIA------------------MMAVSQSEQIGYSNLVESWLGLSIDKGARF 139

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
           T  +     +   EY   DV    ++F +L+           LD  + 
Sbjct: 140 TDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWLDIEME 187


>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2141]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 68  CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFS 119
            + HN+ F+         I++   +++ T   AR          L +    L  S
Sbjct: 95  IIGHNTSFDIRFLNAGFNIELD-NKYMDTMQFARKLFPELKHHRLSDLTSYLGLS 148


>gi|262342089|gb|ACY54555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 13/143 (9%)

Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422
             R    AS G  +  ADL+G+E R+LA        +     G+   +           D
Sbjct: 11  RFRELFTASPGMVMCGADLSGVELRMLAHY------LAKHDGGKYADILLNGDIHQVNAD 64

Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
           K+   + A+  V   A  Y  G +            L   +   K     + + +A    
Sbjct: 65  KIGISRSAVKTV-TYAFLYGAGDEKI---GHSYDKLLSSKAAKAKGKEIKQAYIEAIEGL 120

Query: 483 LWM---QDQYPEFAVKDKLIGTA 502
             +        E      +    
Sbjct: 121 DKLLADVKSASERGFIRAIDQRK 143


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 20/110 (18%)

Query: 1   MS-----KLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMP 54
           M      ++ +D+E              Y   Q  + L   +   E   +     +S M 
Sbjct: 236 MKCRLAGEIAVDLE-----------NHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMG 284

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-SVLARTN 103
             L     D  V  V H +  +    ++  GI +       T    AR  
Sbjct: 285 PSLKDLFADANVKKVMHGADRDIEWLQRDFGIYV--CNMFDTGQQAARVL 332


>gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 69  VAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119
           VAHN+ F+   ++    L  +   + + CT +L+R         SL      L   
Sbjct: 88  VAHNAAFDSKFWQSELALAGEAAPQPFACTVLLSRRIYPEAPSHSLSRLTAHLGLP 143


>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
          Length = 885

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            L D     +    L +     +++ V H +  + +  ++   + +       T   A+ 
Sbjct: 314 YLIDTLSLRSELYQLNEIFTKPSILKVFHGADMDILWLQR--DLSLYVVNMFDTHQAAKQ 371

Query: 103 NGLPS-SLKNAC-LALNFSEHL 122
             LP  SL            + 
Sbjct: 372 LNLPYLSLAYLLNKYCGIDPNK 393


>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
 gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
          Length = 384

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 48/187 (25%), Gaps = 26/187 (13%)

Query: 4   LFIDIE----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59
           + +D E    T    P+               L   +  D+ V +   +     P  L  
Sbjct: 37  IAVDTEFIRRTTY-FPITG-------------LIQISEGDKAVLIDPLSIDEWEP--LRN 80

Query: 60  YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119
            + D +VM V H    +  +F + LG  +    +  T +         SL          
Sbjct: 81  LMVDPSVMKVFHACSEDLDVFDRLLG--VLPTPFYDTQIGEAYASAQWSLSYV----KLI 134

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               ++E  K            +       A  V             +EA   L   +  
Sbjct: 135 HEYLQIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEAKNMLGWVMED 194

Query: 180 LSDGERD 186
               +  
Sbjct: 195 CDSLKWQ 201


>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 231

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 32/153 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------ 54
           + ++ +D ET               E   + L         V       +  +P      
Sbjct: 5   LREIVLDTETTGLD---TESGHRIIEIGCVELIN-RIPTGKVFHRYLNPERDIPYHSFKI 60

Query: 55  ----SDL---LQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWI 94
                +         D            + V HN+ F+         K     I S R +
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNARLISSDRVL 120

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
            T  LAR    G P+SL   C   + S    ++
Sbjct: 121 DTLPLARKKFAGSPASLNALCKRFDISLENREL 153


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDE-----PVK---------LWDR 47
            DIET    PL    +   A   E   I    +   + E      ++         +   
Sbjct: 200 FDIETTGFSPLKNRIIEIGAVKVENGKIVDRFSTFVNPEVPIPFEIEKLTSISDNMVLGA 259

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLARTN 103
            +   +    L++  D   + VAHN+ F+    +      I  K +      T  +AR  
Sbjct: 260 PKIEEVLPKFLEFCSDA--VMVAHNASFDMSFIRH--NAMIQGKSFEPTVLDTVSMARFL 315

Query: 104 GLPSS---LKNACLALNFS 119
               +   L      L  S
Sbjct: 316 LPNLNRFKLDTVAKELRIS 334


>gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23]
 gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 25/137 (18%)

Query: 5   FIDIETRSPQPLPKVGVWA-YAEQAVIT-----LCA-----YAWDDEPVKLWDRTEQSAM 53
            ID ET + +      V         I      L       Y +    V    R +    
Sbjct: 6   AIDFETANNERTSVCSVGVVIVRNGEIVDTFYSLIQPEPNYYNYWCSQVHGLSREDTEDA 65

Query: 54  P------SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR--- 101
           P        +   +  + +  VAHN  F+    K   +   +D P   + CT V +R   
Sbjct: 66  PVFPEVWKQIEPLI--DGLPLVAHNKSFDESCLKAVFRCYQMDYPDYPFYCTCVASRKAF 123

Query: 102 TNGLPSSLKNACLALNF 118
                  L        +
Sbjct: 124 PQLPNHQLHTVSEYCGY 140


>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1302]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
 gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
           D    +   +D+   L +  +  + VAHN+ F+R   +      G        +CT  L+
Sbjct: 71  DMVRGAPTFADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLS 129

Query: 101 RTN---GLPSSLKNACLALNFSE 120
           R          L         + 
Sbjct: 130 RVLFPRESRHGLDALIARHALTP 152


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
           D    +   +D+   L +  +  + VAHN+ F+R   +      G        +CT  L+
Sbjct: 71  DMVRGAPTFADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPD-VLCTVRLS 129

Query: 101 RTN---GLPSSLKNACLALNFSE 120
           R          L         + 
Sbjct: 130 RVLFPRESRHGLDALIARHALTP 152


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 30/143 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------------DEPVKLW--DRT 48
            +  D ET    P     V   A +      A  ++               V     +  
Sbjct: 16  FIAFDTETTGLDPAAGRIVEIGAVKFDRRGIAARYNVLINPEIPMPEEAGKVNGITDEML 75

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIP-------SKRWICTSVL 99
           +   + + +     D   T + VAHN+ F+       +  ++          + + T + 
Sbjct: 76  KDKPLIAAVFPDFFDFIGTGVLVAHNAPFDI----NYINAELKRIGKSPLGNKVVDTRIF 131

Query: 100 ARTNGLPSS---LKNACLALNFS 119
           A+      S   L++  +    +
Sbjct: 132 AKEVFPGLSSYALQDLAVQFGIT 154


>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0043]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|229496277|ref|ZP_04389997.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316855|gb|EEN82768.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 51/187 (27%), Gaps = 31/187 (16%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D E    +P    G     E A + L   +   E   L    +    P  L  +L +  
Sbjct: 50  FDTE---SKPCFTRG-----ETAEVALIQIST-LEDAYLIRVNKTDFTP-RLKAFLANPN 99

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           ++ V  +   +  + ++    ++  + +I              L++ C A    +     
Sbjct: 100 ILKVGLSLRDDYKVMRRRA--EVQPEGFI-------------ELQSLCPAYGIRD----- 139

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185
             G   I     G   S     T             Y   D  A   ++  L+       
Sbjct: 140 -AGLQNIYAIIFGERISKSQRVTNWESPTLSFKQQLYAALDAYACLRIYNALMERPIPHP 198

Query: 186 DLWLLDQ 192
             + L  
Sbjct: 199 SRFALLY 205


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 19/136 (13%)

Query: 3   KLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT------- 48
            +  D+ET         + ++G        V+   +   +        +   T       
Sbjct: 33  YVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMV 92

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
             +    +++    +  E  + VAHN+ F+        G        + T  LAR     
Sbjct: 93  SGAPPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPG 152

Query: 107 ---SSLKNACLALNFS 119
                L          
Sbjct: 153 LRRYRLSALVSHFGVR 168


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 36/153 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--------------------AYAWDDEP 41
            ++ +D ET    P    G     E   + L                      YA     
Sbjct: 8   REVVLDTETTGLDP---DGGDRIIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKI-H 63

Query: 42  VKLWDRTEQSAMPSDLLQ-YLR--DETVMCVAHNSLFERILFKKTLGIDIPSK-----RW 93
               D  +     S++   +L   + +V+ + HN+ F+    K  L   I        + 
Sbjct: 64  GITIDMLKDKPKFSEIADKFLEFVNNSVLVI-HNAGFDIKFIKMELD-KIQKDYDSDFQV 121

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHLTK 124
           + T +LAR    G+ S+L   C   N S    K
Sbjct: 122 VDTLILARKKFPGVSSTLDALCRRFNISLQDRK 154


>gi|157129632|ref|XP_001655429.1| hypothetical protein AaeL_AAEL011560 [Aedes aegypti]
 gi|108872139|gb|EAT36364.1| conserved hypothetical protein [Aedes aegypti]
          Length = 339

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 26/150 (17%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL--FKKTLGIDIP 89
           L + A   E + ++D      +P DL   L D  V  VAHN+   R++    +      P
Sbjct: 146 LLSIAT-PERIYVFDVM-WMNVPKDLRAILGDPKVRRVAHNA---RLVEDVLRHR-YQAP 199

Query: 90  SKRWICTSVLARTNGLPSSLKN---------ACLALNFSEHLTKMEEGKALIARFCKGSI 140
             +   T V        +   +             LN   +        + I    +   
Sbjct: 200 LGKCFDTLVAH--ISTTNDYDDQHELSIQECLAKYLNLPSNFF-----DSSIKFNNRPLN 252

Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
           +S      +           +Y   +V   
Sbjct: 253 ESQRKAAAKNVAFLL--ALQDYLVHEVMLE 280


>gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 53/204 (25%), Gaps = 46/204 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           L +D E     T                   + L    +D E + L D      +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETISLID---PLPITDWTP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D+ V+   H    +  +F+   G  +  +  I T +LA  +G P S        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A I     G         T        +    Y   DV     +  +
Sbjct: 112 ----------CGFATIVESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASK 161

Query: 177 LIPLSDGERDLWLLDQTINDRGYR 200
           L+  ++    +            R
Sbjct: 162 LVDETEAAGQMAAALDECRLLCQR 185


>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 53/204 (25%), Gaps = 46/204 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           L +D E     T                   + L    +D E + L D      +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETISLID---PLPITDWTP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D+ V+   H    +  +F+   G  +  +  I T +LA  +G P S        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A I     G         T        +    Y   DV     +  +
Sbjct: 112 ----------CGFATIVESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASK 161

Query: 177 LIPLSDGERDLWLLDQTINDRGYR 200
           L+  ++    +            R
Sbjct: 162 LVDETEAAGQMAAALDECRLLCQR 185


>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
 gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 100/371 (26%), Gaps = 82/371 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           + +D E     T                   + L    +D + V L D    T+ S   +
Sbjct: 42  IALDTEFVRTRTYY---------------PKLGLIQL-FDGKQVYLIDPLSITDFSPFTA 85

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
                L +E V+ V H    +  +F+         +  + T V+A               
Sbjct: 86  ----LLTNENVLKVLHACSEDLEVFQHYFKQ--LPQPMLDTQVMA--------------- 124

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
             F      +   K  +               T        ++  +Y   DV     ++ 
Sbjct: 125 -GFVGIGISIGFAKLALHYLEVELDK--GASRTDWLSRPLSEIQLQYACADVWYLLPIYH 181

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L                           +V +   L+A+   ++ ED  K+   I  + 
Sbjct: 182 KLAEDLAK---------------TLWQTAVVEECATLLAKR--QIVEDPNKVYKEISNAW 224

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNT 294
           +        L +        +++  ++        +  + K+  L  L  +       + 
Sbjct: 225 QLNQQELAILQI--------LAKWRIEEAEKRDLALNFIIKEQSL--LQIAKLQPKHTSI 274

Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L E +  +  R+ G    +   +     G    P+N P   R             R +  
Sbjct: 275 LLEFMHPNEVRIHGKKILWLVEQ-----GKQILPENYPPVIRRLVDEAGYKTTFKRLQKR 329

Query: 354 ADPLGLASDCV 364
              +   +  +
Sbjct: 330 LTEVCPENLAI 340


>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           62]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|315103391|gb|EFT75367.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA2]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 56/238 (23%), Gaps = 48/238 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPKVSLGPMVEHY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWLLDQTINDRGYR------IDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E         +            +D     K+  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEIAADLPSEEPGVDPKRWRKISHIGDIRSRAGLQVAHDLW 240


>gi|314966730|gb|EFT10829.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA2]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 56/238 (23%), Gaps = 48/238 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPKVSLGPMVEHY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWLLDQTINDRGYR------IDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E         +            +D     K+  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEIAADLPSEEPGVDPKRWRKISHIGDIRSRAGLQVAHDLW 240


>gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617]
 gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617]
          Length = 275

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 384

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 57/218 (26%), Gaps = 54/218 (24%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D + V L D        P  +
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKHVSLIDPLGITDWAP--M 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---L 114
            + L D  V    H    +  +F  T GI    +  I T +LA  +G P S   A     
Sbjct: 76  RELLLDTAVTKYLHAGSEDLEVFLNTFGI--MPQPLIDTQILAAFSGRPLSWGFAAMVEE 133

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               +   ++                       T            EY   DV     + 
Sbjct: 134 YTGLTLDKSE---------------------SRTDWLARPLTARQLEYAAADVFYLLPIA 172

Query: 175 KRLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLK 208
            +L+  ++        L     T   R   +D     +
Sbjct: 173 GQLMKEAEASGWLSAALDECRMTQQRRQEVVDPKEAWR 210


>gi|262212249|gb|ACY35741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  E  V   L G 
Sbjct: 123 AAIQERAESGVLKGLDGR 140


>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 64/269 (23%), Gaps = 40/269 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             ID E        +   + Y ++A +           +       +  + + L   L  
Sbjct: 36  FAIDTE--------RASGYRYDDRAFVVQIR-RRGAGTMLFAPEGHREELTAALAPVLN- 85

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H +  +         + +       T + AR  G            N    + 
Sbjct: 86  -GAEWIIHAAHSDLPCLGW---LGLFPGSIFDTELAARLAGF--------ERPNLGTMVG 133

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +          F         Y     +  Q  +    Y   DVE   EL   L  +   
Sbjct: 134 E---------LFDVELEK--GYGDADWSTPQLSEELKAYAALDVELLLELADALRDILAE 182

Query: 184 ERDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQER--KKLDEDIVKLTDGIIRSSR 236
           +  +               G         +  + I+  R  ++L             + R
Sbjct: 183 QDKMDWALEEFSAIVQEHSGDFAPQPHTWRDLKGISSLRSGRQLAAARELWFKRDAIARR 242

Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSIL 265
              A    L   T +++      T   + 
Sbjct: 243 TDTAPGRVLANKTLVEIARTLPTTAGELA 271


>gi|282853987|ref|ZP_06263324.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|282583440|gb|EFB88820.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|314923384|gb|EFS87215.1| 3'-5' exonuclease [Propionibacterium acnes HL001PA1]
 gi|314981064|gb|EFT25158.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA3]
 gi|315091889|gb|EFT63865.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093353|gb|EFT65329.1| 3'-5' exonuclease [Propionibacterium acnes HL060PA1]
 gi|327327556|gb|EGE69332.1| putative ribonuclease D [Propionibacterium acnes HL103PA1]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 56/238 (23%), Gaps = 48/238 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAM-PSDLLQYL 61
           + ID E              +       L     D     L D      A+    L + L
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
                  + H +  +           +       T +  R   LP  SL           
Sbjct: 88  A--GTQWILHAATQDMPCLAMD---GLRPDDLFDTELAGRLLNLPKVSLGPMVEHY---- 138

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR---- 176
                  G  L+        +    D +R    + WQ+   Y   DVE   +L ++    
Sbjct: 139 ------CGVTLL-------KEHSASDWSRRPLPRDWQV---YAALDVELLNDLREKILSD 182

Query: 177 LIPLSDGERDLWLLDQTINDRGYR------IDLDLVLKLQELIAQERKKLDEDIVKLT 228
           L      E         +            +D     K+  +     +   +    L 
Sbjct: 183 LHEAGKEEWARQEFAHLVEIAADLPSEEPGVDPKRWRKISHIGDIRSRAGLQVAHDLW 240


>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 857

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 23/126 (18%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + I  ++  GI +       T   +R   L   SL++    
Sbjct: 294 LREVFKDPTKRKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLKLERNSLEHL--- 348

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +          ++   Y + D      ++ 
Sbjct: 349 ----------------LRHFCGITANKEYQNADWRLRPLTDEMLR-YGREDTHYLLYIYD 391

Query: 176 RLIPLS 181
            +  + 
Sbjct: 392 LMRIML 397


>gi|193290152|ref|NP_001123262.1| exonuclease 3'-5' domain-like 2 [Nasonia vitripennis]
          Length = 605

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 18/181 (9%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE--RILFKKTLGID 87
           ++L   A  +    L+  ++   +P  L + L    ++ V   + F+  R +       +
Sbjct: 99  VSLLQLATHNGVCALFRLSKIGHIPPKLKELLSSRDLLKVGV-ASFDDGRKI---AKDYN 154

Query: 88  IPSKRWIC-TSVLA-RTNGLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144
                 +    +    +   P SL   C   L+             L  R    + DS  
Sbjct: 155 CQVVGTVDLRMLAHRHSLPSPKSLAALCVQYLDTEMDKI-------LEVRCSNWNADSLT 207

Query: 145 YDCTRANHVQAWQLFGEYCK--RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202
            +        A+     Y +  + +   R +++ L       + L    +  N     ID
Sbjct: 208 NEQISYAAHDAYAAVLIYHQILQKIVQKRSIWESLFFYIKRLQSLSKSQRFFNLPNDIID 267

Query: 203 L 203
            
Sbjct: 268 T 268


>gi|24417713|gb|AAN60444.1| nesprin [Drosophila melanogaster]
          Length = 2576

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 16/227 (7%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 1817 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 1876

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     +  + + + +L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 1877 FERDQKSHSKHKLEERQMELRAKLEELESQSV-NLRQLEQIYAKLAMSAGVEPENIQKLT 1935

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K ++            + + L +A+  D +L           T   
Sbjct: 1936 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 1980

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 1981 NAIQKALEQLPSAENQQTSKAEPKAVLQRLESLEKKLQDAQQHVQQA 2027


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 69  VAHNSLFERILFKK---TLGIDIP-SKRWICTS-VLARTNGLPSSLKNACLALNFSEHL 122
           VAHN+ F+           G+  P    W+CT  +         SL +   A+ ++   
Sbjct: 87  VAHNASFDARFLAHSMEHAGLACPDLAYWMCTMQLAGTFLQGNRSLADCSAAIGYAMQN 145


>gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
 gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
          Length = 193

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 39/166 (23%), Gaps = 49/166 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVIT-----------------LC-----AYAWDDE 40
            LF D ET          +   A    I                          ++   E
Sbjct: 2   YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAE 61

Query: 41  PVKLWDRTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGID 87
              +   T +           + +  L  L     +   H   F+  +      +     
Sbjct: 62  STAIHGITTEQATEQGSAISEVLARFLLALEQSE-LICGHQVSFDHRVVGAELIRA---G 117

Query: 88  IPSKRW----ICTSVLARTNG------LPSSLKNACLALNFSEHLT 123
           +P  +      CT   ++T         P  L  + L L+  +   
Sbjct: 118 MPVDQLDKPRFCTMEASKTLNRSATGHSPHPLSLSALYLHLFDEPF 163


>gi|188532878|ref|YP_001906675.1| DNA polymerase II [Erwinia tasmaniensis Et1/99]
 gi|188027920|emb|CAO95777.1| DNA polymerase II [Erwinia tasmaniensis Et1/99]
          Length = 787

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMP 54
           +  + +DIET     L  +G+         +       ++      D        +  + 
Sbjct: 152 LKWVSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASRLDFNLEYVASRPQLL 207

Query: 55  SDLLQYLR--DETVMCVAHNS-LFERILFKKT---LGIDI 88
             L  +    D  V+ +  N   F+  + +K     GI +
Sbjct: 208 EKLNAWFARHDPDVL-IGWNLVQFDLRVLQKHADRYGIPL 246


>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
 gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 10/226 (4%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D +VM V H    +  +F    G        + T ++A   G    L     AL  
Sbjct: 87  ELLNDASVMKVLHACGEDLEVFHNAFG--AMPVPMVDTQIMAAFLG--HGLSTGFAALVE 142

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                ++++ ++      +   D          H     L   Y     +     + +  
Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVH----YLLPLYEILLEKVMAAGWWQ-A 197

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              + E       +T N     +D+    +L+       K L    ++       +    
Sbjct: 198 AQQESELQASKRVKTPNADNAYLDIKGAWQLKPRELAILKPLATWRMQEAIRRDLALNFV 257

Query: 239 YALRMYLFL-ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +     L +   G+      E     + S          ++ +   
Sbjct: 258 FKEHDLLTVARLGLTSFKRMEEEGMDVRSVQRHGNRIAAMVKSARE 303


>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
 gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L ID E      + +  ++       + L    +D E + L D   + ++     Q L+
Sbjct: 24  ILAIDTE-----FMRRRTLY-----PEVALIQV-YDGEHLALIDPLAELSLFD-FWQILK 71

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106
           D  V+ V H+   +  +F+K  G          T    +  G  
Sbjct: 72  DPKVLKVLHSPSEDIEVFQKYAGFV--PYPLFDTQFALQLLGEG 113


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 43/153 (28%), Gaps = 18/153 (11%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL-- 105
            +  D  +++ D+  + VAHN+ F+        K+ L ++      I T  L R      
Sbjct: 488 DVVRDFREWIDDD--ILVAHNASFDMGFLNVAYKRLLKVEKAQNPVIDTLELGRFLYPEF 545

Query: 106 -PSSLKNACLAL------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV---QA 155
               L   C         +          G  L+      +     Y      ++    A
Sbjct: 546 KNHRLNTLCKKFDIELTQHHRAIYDAEATGYLLLKMLKDAAEKDIQYHDQLNENMGQSNA 605

Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188
           +Q    Y    +       K L  L       +
Sbjct: 606 YQRSRPYHATLLAVNDTGLKNLFKLVSMSHIHY 638


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 26/142 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE----------PVKLWDRT 48
            + +DIET    P    + +VG   +         +   D                 D  
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMV 71

Query: 49  EQSAMPSDLLQYLRD---ETVMCVAHNSLFER----ILFKKTLGIDIPSKRWICTSVLAR 101
                  +++  L D        V HN+ F+      +  K LG    +     T  L+R
Sbjct: 72  AGQPRVEEVIAGLLDFVGPA-PLVLHNAPFDLSFIAPVLDK-LGRKWQAMTVFDTLPLSR 129

Query: 102 TNGL---PSSLKNACLALNFSE 120
                    SL++      F E
Sbjct: 130 VAFPGLRSYSLESLSDFFEFKE 151


>gi|28416396|gb|AAO42670.1| AT10293p [Drosophila melanogaster]
          Length = 1545

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 16/227 (7%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 790  NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 849

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     +  + + +K+L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 850  FERDQKSHSKHKLEERQKELRAKLEELESQSV-NLRQLEQIYAKLTMSAGVEPENIQKLT 908

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K ++            + + L +A+  D +L           T   
Sbjct: 909  L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 953

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 954  NAIQKALEQLPSAEDQQTSKAEPKAVLQRLESLEKKLQDARQHVQQA 1000


>gi|319953164|ref|YP_004164431.1| 3'-5' exonuclease, polb [Cellulophaga algicola DSM 14237]
 gi|319421824|gb|ADV48933.1| 3'-5' exonuclease, PolB [Cellulophaga algicola DSM 14237]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 43/185 (23%)

Query: 22  WAYAEQAVITLCAYAW----DDEPVKLWDRTEQS--AMPSDLLQYLRD----ETVMCVAH 71
             +AE   I   +  +     +               + ++    L         +   H
Sbjct: 57  GIWAEFGKIICISVGYFKFSGESRTFRVTTFHGEEAQLLNEFKALLDSHFSQPKYLLCGH 116

Query: 72  NSL-FERILFKKTL---GIDIPS-------KRWI----CTSVLARTNGLPS--SLKNACL 114
           N+  F+     + +    ID+P+       K W      T  L +        SLK    
Sbjct: 117 NAKEFDFPYIARRMLINTIDLPNKLNLFGRKPWEIEHLDTMELWKFGDYKHYSSLKLMAN 176

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L                    KG ID               ++   YC+ DV  T ++F
Sbjct: 177 VLGIP---------------SPKGDIDGSMVRNVYYEDKDLDRIVT-YCELDVVTTAQVF 220

Query: 175 KRLIP 179
            RL  
Sbjct: 221 LRLRN 225


>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
 gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
          Length = 245

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 42/156 (26%)

Query: 2   SKLFIDIETRSPQP------------------LPKVGVWAYA--------EQAVITLCAY 35
            ++ +D ET    P                  +    +  Y         E A +     
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 36  AWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDI 88
              +         +    +   L           + HN+ F+        + +G   I+ 
Sbjct: 64  EVLEAK-NAPPFAQVGKQIADFLR------GAELIIHNAKFDVGFLNMEFRRMGLPSIEE 116

Query: 89  PSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
              +   T  +AR    G  +SL   C   +     
Sbjct: 117 LGCKVTDTLAMAREMFPGQKASLDALCNRFSVDRSK 152


>gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
 gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
          Length = 164

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 25/138 (18%)

Query: 5   FIDIETRSPQPLPKVGVWA-YAEQAVIT-----LC-----AYAWDDEPVKLWDRTEQSAM 53
            ID ET + Q      V         I      L       Y++ +  V      + +  
Sbjct: 6   AIDFETANEQRTSVCSVGVVIVRDGEIVDNYYSLIRPEPEYYSYWNTRVHGLTLADTAEA 65

Query: 54  P------SDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLARTNG 104
           P       ++   +    +  VAHN  F+    K       +D P   + CT   AR   
Sbjct: 66  PVFPVVWQEIAPLIE--GLPLVAHNKGFDESCLKAVFKTYCLDYPDYEFHCTLSTARRRI 123

Query: 105 ---LPSSLKNACLALNFS 119
                  L      + + 
Sbjct: 124 KGLPSYQLHTVAAYVGYE 141


>gi|134098409|ref|YP_001104070.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
 gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 52/188 (27%), Gaps = 38/188 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLR 62
           + +D E        +   + Y+++A +       +    V +       ++   L   L 
Sbjct: 52  VAVDTE--------RASGYRYSQRAYLV--QLRREGAGTVLVDPIALAGSL-EPLATALD 100

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
           D     V H +  +     +   +D+   R   T +  R  G    SL            
Sbjct: 101 D--TEWVLHAASQDLPCLAE---LDLRPARLFDTELAGRLAGFDRVSLGALVER----ML 151

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++E+G +      +                        Y   DVE    L + +    
Sbjct: 152 GYRLEKGHSAADWSRRPLPADWLA----------------YAALDVELLVALREAMHAEL 195

Query: 182 DGERDLWL 189
           + +  L  
Sbjct: 196 ERQDKLEW 203


>gi|40217899|gb|AAR82868.1| hypothetical protein [Campylobacter jejuni]
 gi|41058386|gb|AAR99163.1| hypothetical protein [Campylobacter jejuni]
 gi|62868454|gb|AAX83128.1| Cj1132c [Campylobacter jejuni subsp. jejuni 81-176]
 gi|75911803|gb|ABA29493.1| hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|75911830|gb|ABA29515.1| hypothetical protein [Campylobacter jejuni]
 gi|75911840|gb|ABA29523.1| hypothetical protein [Campylobacter jejuni]
          Length = 276

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 16/187 (8%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILF-KKTLGIDIPSKRWICTSVLART 102
            D   +  M  +   ++ +     V+ N   F+  +   + L  ++ +  ++ T   +  
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDT--QSDK 148

Query: 103 NGLPSS----LK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                +    LK  +   +L  +    K++   +++    K   D    +  +  +    
Sbjct: 149 WNNYKTRFSELKHCDLLESLGSNGRGIKLDTLCSMVGLPGKY--DVHGDEVMKLFYENEL 206

Query: 157 QLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTIND--RGYRIDLDLVLKLQEL 212
           +   EYC+ DV  T  LF +  LI  +  E D       + D  R  + D        + 
Sbjct: 207 EKIYEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKA 266

Query: 213 IAQERKK 219
              E  K
Sbjct: 267 CESEISK 273


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 34/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQS--------------- 51
           ET     +   G+ A     +I L A    D  +  +                       
Sbjct: 427 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITD 485

Query: 52  ------AMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVL 99
                   P ++L    D       VAHN+ F+         +     I     I T  L
Sbjct: 486 EMVKDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNTGLARMGRGKIA-NPVIDTLEL 544

Query: 100 ARTNGL---PSSLKNACLALNFS 119
           AR          L   C   +  
Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIE 567


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 21/138 (15%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDE---PVKLW-------DRT 48
            +  DIET    S    + ++G        +I   +   + E   P K+        D  
Sbjct: 426 FIIFDIETTGLSSKNDEITEIGAIKIKNNRIIDSFSTLINPERSIPEKIVELTGISDDMV 485

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK-KTLGIDIPSKRW-ICTSVLARTNG 104
           +       +L    D       VAHNS F+    + K    ++      I T  LAR   
Sbjct: 486 KDQPTIEVVLPQFLDFIGDCPVVAHNSDFDTGFIRDKAERYELSFDNIAIDTLKLARALL 545

Query: 105 L---PSSLKNACLALNFS 119
                  L      LN S
Sbjct: 546 PDLKKHRLNVIAKELNIS 563


>gi|50286981|ref|XP_445920.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525226|emb|CAG58839.1| unnamed protein product [Candida glabrata]
          Length = 1284

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 71/296 (23%), Gaps = 65/296 (21%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +++ I A  G   V AD+   E  + + + G+                   KA
Sbjct: 696 KNRIGSELKAQICAPEGYSFVGADVDSEELWIAS-LFGDSVLRIHGGTPIGWMCLEGTKA 754

Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
             + +   + +           L                G  ++  SQ +K  +      
Sbjct: 755 EGSDLHTKTAQI----------LSCDRNEAKIFNYGRIYGAGVKFASQLLKKFNP----- 799

Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536
                                L     +                           + E  
Sbjct: 800 --------------------TLSEKEAK--------------------ETAVK--LYEST 817

Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595
               +R     +      +  +   L S             C   N+   Q ++  ++  
Sbjct: 818 KGKTKRSKVFKKFWYGGSESILFNKLESIAEQDNPMTPVLGCGITNSLMKQNLKANSFLP 877

Query: 596 KLTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
                 +Q+   D   +LC  M    +       +++++HDEI     D   + + 
Sbjct: 878 SRVNWAIQSSGVDYLHLLCCSMNYLISMYNIEARLIISIHDEIRYLVADKDKYKLA 933


>gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430]
 gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 55/204 (26%), Gaps = 46/204 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           L +D E     T                   + L    +D E + L D      +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETICLID---PLPITDWTP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D+ V+   H    +  +F+   G  +  +  I T +LA  +G P S        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A I     G +       T        +    Y   DV     + ++
Sbjct: 112 ----------CGFATIVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEK 161

Query: 177 LIPLSDGERDLWLLDQTINDRGYR 200
           L+  ++    +            R
Sbjct: 162 LVAETEAAGQMAAALDECRLLCQR 185


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 34/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQS--------------- 51
           ET     +   G+ A     +I L A    D  +  +                       
Sbjct: 427 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITD 485

Query: 52  ------AMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVL 99
                   P ++L    D       VAHN+ F+         +     I     I T  L
Sbjct: 486 EMVKDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIA-NPVIDTLEL 544

Query: 100 ARTNGL---PSSLKNACLALNFS 119
           AR          L   C   +  
Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIE 567


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 33/146 (22%)

Query: 1   MSKLFIDIETRS----PQPLPKVGVWAYAEQAVIT--LCAY---------------AWDD 39
           M+   +DIET       + + ++ +  +     +     +                  D 
Sbjct: 1   MTYAVLDIETTGGKFDEEGITEIAIHRFDGH-EVVDTFISLINPERPIQPYVQKLTGIDP 59

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT 96
           + V+   R     +   +++  RD   + VAHN+ F+  + +   + LG +   K   CT
Sbjct: 60  KMVQTAPRFH--QVAKRIVEITRDS--VLVAHNAQFDYRILRTEFRRLGYNFERKTL-CT 114

Query: 97  SVLARTNGL---PSSLKNACLALNFS 119
             L++         SL     +L   
Sbjct: 115 VDLSQRLIPDAESHSLGKLVRSLGIP 140


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 35/139 (25%), Gaps = 26/139 (18%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITL-CAYAWDDEPVK--LWDRTEQ----- 50
            +  D+ET         + ++G         +    A   D                   
Sbjct: 20  FVVFDLETTGGSPAEDAITEIGAVKVCG-GQVRGEFATLIDPGRPIPPFISVLTGITDAM 78

Query: 51  ----SAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
                 +P  L  +L        VAHN+ F+    +      G   P+   + T+ LAR 
Sbjct: 79  VVAAPKLPQVLPAFLEFIRGATLVAHNAPFDLGFLRAACAEYGYPPPANPVVDTADLARR 138

Query: 103 NGLPS-----SLKNACLAL 116
                      L       
Sbjct: 139 MLTRDETPDCKLATLARYF 157


>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 847

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 21/139 (15%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D          L +   D  ++ V H +  + +  ++  GI +       T    R 
Sbjct: 316 YIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYV--VNMFDTYKAMRV 373

Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                         ++            L+   C  ++D                    Y
Sbjct: 374 LNFSK--------FSYQH----------LVQTCCNHTLDKKFQKADWRLRPLTIAH-KTY 414

Query: 163 CKRDVEATRELFKRLIPLS 181
            + D       + +L    
Sbjct: 415 ARSDTHYLLHCYDQLRKRL 433


>gi|262212341|gb|ACY35787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YATDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V + L G 
Sbjct: 123 AAIQERAKSGVLEGLDGR 140


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 46/180 (25%), Gaps = 22/180 (12%)

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK----KTLGIDIPSKRWICTSVLART 102
             S    ++ +  RD  E  + V HN  F+         +    +I     I T  LAR 
Sbjct: 479 HGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIK-NPIIDTLTLARF 537

Query: 103 NGL---PSSLKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRAN 151
                    L             +          G  L   F K + D     Y     +
Sbjct: 538 LYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGH-LNYLFLKDAEDRYGIVYHDELND 596

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           H+     +            +    L  +      L  +D        R+    + K +E
Sbjct: 597 HMTENDAYKHARPSHAVIIAKNQVGLKNMFKIV-SLSNVDYFFRVP--RVPRTQLEKFRE 653


>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
 gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 39/160 (24%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVH-YEGH-RIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD---------ETVMCVAHNSLFERILFKKTLGI---DI 88
                       +         D              + HN+ F+         +   DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADIAPEFLEFIRGAELIIHNAAFDIGFMDHEFRMLQQDI 123

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     ++AR    G  ++L   C         
Sbjct: 124 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTK 163


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 46/180 (25%), Gaps = 22/180 (12%)

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK----KTLGIDIPSKRWICTSVLART 102
             S    ++ +  RD  E  + V HN  F+         +    +I     I T  LAR 
Sbjct: 479 HGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIK-NPIIDTLTLARF 537

Query: 103 NGL---PSSLKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRAN 151
                    L             +          G  L   F K + D     Y     +
Sbjct: 538 LYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGH-LNYLFLKDAEDRYGIVYHDELND 596

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           H+     +            +    L  +      L  +D        R+    + K +E
Sbjct: 597 HMTENDAYKHARPSHAVIIAKNQVGLKNMFKIV-SLSNVDYFFRVP--RVPRTQLEKFRE 653


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 28/144 (19%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV------------ 42
           ++ + ID ET    P    + +V    Y     +     +Y   + P+            
Sbjct: 11  LNYVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITN 69

Query: 43  -KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
            ++ D      +    L +L  + V+ VAHN+ F+    K     LG+  P  + I T  
Sbjct: 70  YRVSDAPTIEEVLPLFLAFL-HKNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVF 127

Query: 99  LA--RT-NGLPSSLKNACLALNFS 119
           LA     +     L+     L   
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIR 151


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 25/141 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYA---EQAVITL-CAYAWDDE--------------PVK 43
           + +  DIET     L    +   A   E   +    +   + E                 
Sbjct: 501 NYVVFDIETTGLSNLTCKIIEIGAVRVEHGEVVSRFSEFINPEVPIPFKITELTSITDAM 560

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSK-RWICTSVLAR 101
           + D      +     ++  D   + VAHN+ F+    K       +  +  ++ T  +A+
Sbjct: 561 VEDAPVIEEILPKFREFCGDA--VLVAHNADFDTGFIKMECERQKLDWEFTYVDTVAMAQ 618

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L     A+   
Sbjct: 619 MLLPGLSRFKLDTVAKAVGVP 639


>gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 55/204 (26%), Gaps = 46/204 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           L +D E     T                   + L    +D E + L D      +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETICLID---PLPITDWTP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D+ V+   H    +  +F+   G  +  +  I T +LA  +G P S        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A I     G +       T        +    Y   DV     + ++
Sbjct: 112 ----------CGFATIVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEK 161

Query: 177 LIPLSDGERDLWLLDQTINDRGYR 200
           L+  ++    +            R
Sbjct: 162 LVAETEAAGQMAAALDECRLLCQR 185


>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQP---------LPKVGVWAYA---------------------EQAVIT 31
            ++ +D ET              + ++G                          E   + 
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFTVH 66

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDI 88
             +   DD    L D+   + +  + L ++R      V HN+ F+           G D+
Sbjct: 67  GIS---DD---FLLDKPSFAEVADEFLAFIR--GAELVIHNAPFDIGFMDYEFAKLGRDL 118

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     V+AR    G  +SL   C         
Sbjct: 119 PKTETFCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSK 158


>gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 67  MCVAHNSLFERILFKKTL---GIDI---PSKRWICTSVLARTNGLPS---SLKNACLALN 117
             VAHN+ F+    +  L   G  I   P     CT   A+    P    +L   C  L 
Sbjct: 249 PLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCTRQWAQV-AYPHLANNLDALCAFLG 307

Query: 118 FS 119
             
Sbjct: 308 ID 309


>gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946]
 gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 55/204 (26%), Gaps = 46/204 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           L +D E     T                   + L    +D E + L D      +     
Sbjct: 25  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETICLID---PLPITDWTP 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L D+ V+   H    +  +F+   G  +  +  I T +LA  +G P S        
Sbjct: 66  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 115

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A I     G +       T        +    Y   DV     + ++
Sbjct: 116 ----------CGFATIVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEK 165

Query: 177 LIPLSDGERDLWLLDQTINDRGYR 200
           L+  ++    +            R
Sbjct: 166 LVAETEAAGQMAAALDECRLLCQR 189


>gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
 gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
          Length = 1011

 Score = 41.2 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 43/146 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------------------- 42
            + +D ET               +   I   A   ++  V                    
Sbjct: 53  IVALDTETTGL-------SHKNDQLTQIA--AVKLEEGSVADEFTTFVNPSRPIPHNIEK 103

Query: 43  ----KLWDRTE---QSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                  D           + L  ++  D     +AHN+ F+R   +        S  WI
Sbjct: 104 LTNIYSVDVEHAPTPQTAVARLADFVELDP---ILAHNASFDRAFIEAAQNDTCVSDTWI 160

Query: 95  CTSVLARTNGL---PSSLKNACLALN 117
            T  L+R          L++      
Sbjct: 161 DTLALSRIAFPALTSHKLQDLAYIFG 186


>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score = 41.2 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 17/98 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57
           S + +DIE  +                 I++     DDE V + D      +   + +  
Sbjct: 58  SIIGVDIEHTNDIGF----------DGQISIVQIK-DDEDVYIIDVIEIGVDNQKLINVF 106

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
            Q   D+ ++ V +    + +  K+   I I    +  
Sbjct: 107 KQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQ--NFFD 142


>gi|407653|gb|AAD12336.1| unknown [Mycoplasma genitalium]
          Length = 76

 Score = 41.2 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 7/60 (11%)

Query: 69  VAHN-SLFERILFK-KTLGIDIPS--KRWICTSVLARTNGL---PSSLKNACLALNFSEH 121
           VAHN   F+    + +    +I       I T  L+          +L N C  L     
Sbjct: 7   VAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLCLSWALNPLFSSHTLSNICSKLKLEFD 66


>gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829]
          Length = 1008

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 43/146 (29%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------------------- 42
            + +D ET               +   I   A   ++  V                    
Sbjct: 50  IVALDTETTGL-------SHKNDQLTQIA--AVKLEEGSVADEFTTFVNPSRPIPHNIEK 100

Query: 43  ----KLWDRTE---QSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94
                  D           + L  ++  D     +AHN+ F+R   +        S  WI
Sbjct: 101 LTNIYSVDVEHAPTPQTAVARLADFVELDP---ILAHNASFDRAFIEAAQNDTCVSDTWI 157

Query: 95  CTSVLARTNGL---PSSLKNACLALN 117
            T  L+R          L++      
Sbjct: 158 DTLALSRIAFPALTSHKLQDLAYIFG 183


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA 100
           + D  +   +    +++  D   + VAHN+ F+     K     GI+      I T  LA
Sbjct: 540 VIDAPKIETILPQFMEFCGDA--IMVAHNADFDMSFIIKNCERQGIE-KEFTIIDTVALA 596

Query: 101 RTNGLPSS---LKNACLALNFS 119
           R      +   L     AL  S
Sbjct: 597 RILLPQLNRFKLDTVAKALGVS 618


>gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 33/147 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL-------------------CAYAWDDEP 41
           M ++ +D ET     +         E   I L                    +    +  
Sbjct: 1   MKEVVLDTETTG---ISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPERKVSEKALEVH 57

Query: 42  VKLWDRTEQSA----MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWI 94
               +   +      +    L +++D+    + HN+ F+       L I    K     +
Sbjct: 58  GYTDEFLSEQKKFSDIGEQFLAFIKDKR--LIIHNAEFDLGHLNNELSIFGKKKINNEIV 115

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFS 119
            T +LAR    G P SL   C      
Sbjct: 116 DTLILARDKFPGSPVSLDALCKRYRID 142


>gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001]
 gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAW----DDEPVKLWD--RTEQSAM 53
           L +D ET    P     +   A    +     L   ++     + P +  +      + +
Sbjct: 66  LILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLLPVRENPAEAINGIAAATTRL 125

Query: 54  PSDLL------QYLRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTS 97
           P          + +  +    +AHN+ F+R  F +    ++P     WIC+ 
Sbjct: 126 PQPWRQGLSCFEAMAADADAVLAHNAAFDRQWFGR---GELPALGAPWICSM 174


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 27/139 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDR-------- 47
            L +D+ET   +P    L ++G        VI       +     P  +           
Sbjct: 47  FLVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGEFGSLVNPGVPIPAFITRLTGITTGMV 106

Query: 48  TEQSAMPSDLLQYLR----DETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA 100
               ++   L+ ++     D  ++ VAHN+ F+          LG+  P+++ I T  L+
Sbjct: 107 ATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGLAFPNRKVIDTVKLS 166

Query: 101 RTN-----GLPSSLKNACL 114
           R            L     
Sbjct: 167 RRVFMKDEVPNHKLSTLAR 185


>gi|239909232|ref|YP_002955974.1| putative helicase [Desulfovibrio magneticus RS-1]
 gi|239799099|dbj|BAH78088.1| putative helicase [Desulfovibrio magneticus RS-1]
          Length = 995

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 44/173 (25%), Gaps = 31/173 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +D+ETR                A     + A   +       T        L + L    
Sbjct: 824 LDVETR-----RAAADVGGWGNAHKMGVSVAVLYDSGLDDCITYAQEELPALYEALARLD 878

Query: 66  VMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSEH 121
            + V  N L F+  +      +D      +   +L R     G   SL     A      
Sbjct: 879 -LIVGFNILRFDYKVLAGASPLDHRKLPTLD--ILERVHARLGYRLSLDGLAKA------ 929

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                               +   +               YCK+DV  TR+L+
Sbjct: 930 -------------TLGTQKSASGLEALAWWKEGRIDEIAAYCKKDVLVTRDLY 969


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 55  SDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLP 106
           +D+   L +  +  + VAHN+ F+R   +      G+       +CT  L+R        
Sbjct: 80  ADIAPALLERLDGKLFVAHNASFDRGFLRAEFERAGVAFNPD-VLCTVRLSRALFPRESR 138

Query: 107 SSLKNACLALNF 118
             L         
Sbjct: 139 HGLDALIERHAL 150


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 55  SDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLP 106
           +D+   L +  +  + VAHN+ F+R   +      G+       +CT  L+R        
Sbjct: 80  ADIAPALLERLDGKLFVAHNASFDRGFLRAEFERAGVAFNPD-VLCTVRLSRALFPRESR 138

Query: 107 SSLKNACLALNF 118
             L         
Sbjct: 139 HGLDALIERHAL 150


>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
 gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 44/160 (27%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVH-YEGH-RIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVKLWDRTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DI 88
                                +  + L+++R      + HN+ F+         +   DI
Sbjct: 66  EAYGVHGISDEFLADKPTFAEITPEFLEFIR--GAELIIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     ++AR    G  ++L   C         
Sbjct: 124 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTK 163


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 14/121 (11%)

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL 99
           D    S    ++ +  ++  +  + V HN+ F+        ++   +++  + WI T  L
Sbjct: 490 DMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERH-NMEMIQEPWIDTLPL 548

Query: 100 ARTNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           AR          L      LN             E    I        +          +
Sbjct: 549 ARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQILYHDDFN 608

Query: 153 V 153
            
Sbjct: 609 K 609


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---PS 107
           P    +       + VAHN+ F+R   +   + +G+       +CT  L+R         
Sbjct: 84  PELFKRL---NGKLFVAHNASFDRGFLRGEFRRVGLAFDPD-VLCTVRLSRALFPAEKRH 139

Query: 108 SLKNACLALNF 118
            L         
Sbjct: 140 GLDALVERHAL 150


>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 33/130 (25%), Gaps = 35/130 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY--------AWDDE------PVKLWDRT 48
            LF D ET       K  V        +   AY                           
Sbjct: 2   YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTE 61

Query: 49  --------------EQSAMPSDLLQY--LRDETVMCVAHNSLFERIL-----FKKTLGID 87
                         E   + + L  +  + +E    VAHN  F+  +      +  +   
Sbjct: 62  ASRIHGITTERANQEGKPIQTVLRDFQSMINEAQYLVAHNMSFDEKIVGAEFLRNNMPDS 121

Query: 88  IPSKRWICTS 97
           I  KR ICT 
Sbjct: 122 IAPKRKICTM 131


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 33/128 (25%), Gaps = 30/128 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------------DEPVKLW--DRTEQ 50
             D ET   +   +  V     +  I      ++               V     +    
Sbjct: 18  AFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEMLAG 77

Query: 51  SAMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTS------- 97
               +++L    D     + VAHN+ F+        ++     + + +   T        
Sbjct: 78  QPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKL-TNKVFDTLTFARETL 136

Query: 98  --VLARTN 103
             + +   
Sbjct: 137 PGLQSYAL 144


>gi|299533612|ref|ZP_07046986.1| DNA polymerase II [Comamonas testosteroni S44]
 gi|298718334|gb|EFI59317.1| DNA polymerase II [Comamonas testosteroni S44]
          Length = 672

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 68/220 (30%), Gaps = 67/220 (30%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQS 51
           +  + +DIET   Q L  + +   AE+ V  L       EP          +L   T + 
Sbjct: 36  LKVVSLDIETSQHQDLYSIALDGMAERVVFML------GEPTAKPVRTPGFELIHCTTRK 89

Query: 52  AMPSDLLQYLR--DETVMCVAHN-SLFERILFKK---------TLGIDIPSKRWICT--- 96
           AM   L  +    D  V+ +  N   F+  + +K          LG +     W  T   
Sbjct: 90  AMIDRLNDWFARNDPDVI-IGWNVIQFDLRVLQKTADECATPLLLGRERKPIAWR-THPG 147

Query: 97  --------S-----------VLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFC 136
                               + A     PS SL+N    L        + EGK +   + 
Sbjct: 148 KQGYLFAPMPGRVVVDGIEALRAAVWSFPSFSLENVAQEL--------LGEGKDIGDEYD 199

Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           K +     Y   +            Y  RD E    +F++
Sbjct: 200 KMAEIERRYQLDKPA-------LAAYNIRDCELVLRIFEK 232


>gi|170731148|ref|YP_001776581.1| ribonuclease D [Xylella fastidiosa M12]
 gi|167965941|gb|ACA12951.1| ribonuclease D [Xylella fastidiosa M12]
          Length = 362

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E        + G +       + L   A +DE + +        M   L  +L 
Sbjct: 21  RIGMDTE------FIREGTFW----PELALVQIAIEDEILLVDPLVPG--MTDALGLWLA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
              V+ + H++  + I FK   G  +  +    T +
Sbjct: 69  APNVIKIMHSASEDLIAFKYACG--VLPRPLFDTQI 102


>gi|262212331|gb|ACY35782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YATDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V + L G 
Sbjct: 123 AAIQERAKSGVLEGLDGR 140


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 27/139 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAV----------ITLCAYAWDDEPVK---------LWD 46
           +D+ET    P     +   A +            +   +  +  E +          + D
Sbjct: 14  VDLETTGLNPKTSEIIEIAAIKVEGSVITEKFHTLVKPSIGFIPEHITKLTGITNPLVID 73

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN 103
           + +   +    L++ ++   + +AHN+ F+     +    L   +     ICT VLA   
Sbjct: 74  KPKIEQVFPHFLEFTKNS--IIIAHNAKFDISFLNEASLQLTGKLIQNPVICTLVLANRL 131

Query: 104 GL---PSSLKNACLALNFS 119
                  SL N     N  
Sbjct: 132 FPDLKSKSLTNLAYHFNIP 150


>gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
 gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
          Length = 164

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 46/145 (31%), Gaps = 29/145 (20%)

Query: 1   MS-KLFIDIET--RSPQPLPKVGVWAYAEQAVIT-----LC-----AYAWDDEPVK---L 44
           M   + ID ET  R    +  VG+    E   I      L       Y+  +  +     
Sbjct: 1   MKDFVAIDFETANRERTSICSVGLVR-VENGDIREKIYRLIRPYPDYYSSWNTRIHGLTY 59

Query: 45  WDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
            D    +  P    D+   L    +  VAHNS F+    K   +  G+  P  R+ CT  
Sbjct: 60  RDTAHAAPFPEVWADISPELA--GLPLVAHNSPFDEGCLKAAFRQYGMAYPDYRFFCTCR 117

Query: 99  LARTN----GLPSSLKNACLALNFS 119
            +R           L+       F 
Sbjct: 118 ASRRVFGRELPNHQLQTVAARCGFD 142


>gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03]
          Length = 828

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +   + + + D   + VAHN  F+  L  + L   G ++ + R   T  LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SSLKNACLALNFS----EHLTKM--EEGKALIARFCKGSI 140
             +L      LN          +     GK L+    K + 
Sbjct: 132 QYNLSYLSRVLNLDLAQAHTAIEDARATGKLLLHLMDKIAS 172


>gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus thermophilus CNRZ1066]
 gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 828

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +   + + + D   + VAHN  F+  L  + L   G ++ + R   T  LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SSLKNACLALNFS----EHLTKM--EEGKALIARFCKGSI 140
             +L      LN          +     GK L+    K + 
Sbjct: 132 QYNLSYLSRVLNLDLAQAHTAIEDARATGKLLLHLMDKIAS 172


>gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus
           LMG 18311]
          Length = 557

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +   + + + D   + VAHN  F+  L  + L   G ++ + R   T  LA+       
Sbjct: 86  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 142

Query: 107 -SSLKNACLALNFS----EHLTKM--EEGKALIARFCKGSI 140
             +L      LN          +     GK L+    K + 
Sbjct: 143 QYNLSYLSRVLNLDLAQAHTAIEDARATGKLLLHLMDKIAS 183


>gi|2494178|sp|Q92076|DPOG1_CHICK RecName: Full=DNA polymerase subunit gamma-1; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1405384|gb|AAC60018.1| DNA polymerase gamma [Gallus gallus]
          Length = 647

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 82/314 (26%), Gaps = 27/314 (8%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           LP+   +  I  + ++      + A         +++ +    G  LV AD+   E  + 
Sbjct: 253 LPQVVTAGTITRRAVEPTWLTASNARA-DRVGSELKAMVQVPPGYSLVGADVDSQELWIA 311

Query: 390 A-----WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444
           A       AG                +      +     V    R   KV      Y  G
Sbjct: 312 AVLGEAHFAGMHGCTAFGWMTLQGKKSDGTDLHSKTAATV-GISREHAKVFNYGRIYGAG 370

Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504
               + +       L Q     K+   +   +     HL   ++      + +L     E
Sbjct: 371 QPFAERLLMQFNHRLTQQQAREKAQQMYAVTKGIRRFHLS--EEGEWLVKELELAVDKAE 428

Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564
                     Q V ++ ++         +                +  + +       P 
Sbjct: 429 DGTV----SAQDVQKIQREAMRKSRRKKKWDVVAHRMWAGGTESEMFNKLESIALSASPQ 484

Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMKNA---T 618
           +  L     +     +        R           +VQ+ + D   ++   MK      
Sbjct: 485 TPVLGCHISRALEPAVAKGEFLTSR--------VNWVVQSSAVDYLHLMLVSMKWLFEEY 536

Query: 619 KNGYDIVLTVHDEI 632
                  +++HDE+
Sbjct: 537 DINGRFCISIHDEV 550


>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
 gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
          Length = 253

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 42/160 (26%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQ---------PLPKVGVWAYA---------------------EQAVIT 31
            ++ +D ET              + ++G                          E   + 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDI 88
             +  +  +     D         + ++++R      + HN+ F+             DI
Sbjct: 67  GISDEFLQDKPVFADIA------DEFIEFIR--GAELIIHNAPFDIGFMDYEFSKLNKDI 118

Query: 89  PSK----RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           P      +   + V+AR    G  ++L   C         
Sbjct: 119 PPTADFCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTK 158


>gi|302697639|ref|XP_003038498.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
 gi|300112195|gb|EFJ03596.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
          Length = 644

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 43/153 (28%), Gaps = 13/153 (8%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            + L   A D + + L   ++    P  L   L D +V         +     +  GI +
Sbjct: 77  RVALVQVA-DGDHIVLVQVSQMQLFPEQLRLLLEDPSVAKTGVGISGDAQKLYRDHGISM 135

Query: 89  PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148
                +   ++ R+              N+    +       LI  + K  +       +
Sbjct: 136 --SNVVDLGLMTRSVDNA----------NWKGPYSSPIGLARLIDFYEKRELRKGRISRS 183

Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
               V       +Y   D      L+ RL  L 
Sbjct: 184 NWEKVPLSDEQKQYAANDAHCAWVLYGRLRTLL 216


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 46/180 (25%), Gaps = 22/180 (12%)

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK----KTLGIDIPSKRWICTSVLART 102
             S    ++ +  RD  E  + V HN  F+         +    +I     I T  LAR 
Sbjct: 479 HGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIK-NPIIDTLTLARF 537

Query: 103 NGL---PSSLKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRAN 151
                    L             +          G  L   F K + D     Y     +
Sbjct: 538 LYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGH-LNYLFLKDAEDRYGIVYHDELND 596

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
           H+     +            +    L  +      L  +D        R+    + K +E
Sbjct: 597 HMTENDAYKHARPSHAVIIAKNQVGLKNMFKIV-SLSNVDYFFRVP--RVPRTQLEKFRE 653


>gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
 gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
          Length = 384

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 58/232 (25%), Gaps = 55/232 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D + V L D        P  +
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKRVSLIDPLGITDWTP--M 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---L 114
              L D  V    H    +  +F  T GI    +  I T +LA  +  P S   A     
Sbjct: 76  RDLLLDTAVTKYLHAGSEDLEVFLNTFGI--MPQPLIDTQILAAFSNRPLSWGFAAMVEE 133

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
               +   ++                       T            EY   DV     + 
Sbjct: 134 YTGLTLDKSE---------------------SRTDWLARPLTARQLEYAAADVFYLLPIA 172

Query: 175 KRLIPLSDG----ERDLWLLDQTINDRGYRID-LDLVLKLQELIAQERKKLD 221
            +L+  S+        L         R   +D  +    +        ++L 
Sbjct: 173 GQLMKESEASGWLSAALDECRMAQQRRQEVVDPKEAWRDISNAWQLRTRQLA 224


>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 223

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + LCA  + D   V++      
Sbjct: 44  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 103

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRW------I 94
           D  +  +    LLQ +        V ++  +++ +     +K LG  +P++         
Sbjct: 104 DLHDGLSEKEALLQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 163

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL+  C  L+        
Sbjct: 164 D-KLEKHLPNAYFDLSLEAICRHLDLPLQDKHD 195


>gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
 gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
          Length = 213

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 28/134 (20%)

Query: 4   LFIDIETRSP-QPLPKVGVWAYAE---QAVIT---------LCAYA--WDDEPVKLWDRT 48
           + +D ET      +    +   A       +              +   +          
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVDTFQQLMNPGFRVSGFIEGYTGITNRML 69

Query: 49  EQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR 101
                   +  +   +++D     VAHN+ F++         +G D    ++ C+ ++AR
Sbjct: 70  STAASCGEVMDEFADFIQDSQ--LVAHNASFDKRFLDAELDYIGRDYNG-QFACSMLIAR 126

Query: 102 TNG---LPSSLKNA 112
                     L + 
Sbjct: 127 RLIQDAPTHKLGDL 140


>gi|328874971|gb|EGG23336.1| hypothetical protein DFA_05468 [Dictyostelium fasciculatum]
          Length = 455

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85
           E   I+L   + + E   L+   +   +P  L+Q L   +++ V H    +     K   
Sbjct: 312 EDPKISLIQLS-NGEYTALFRICKFEEIPDALVQLLTSRSILKVGHGLSKDANRLNKEQK 370

Query: 86  IDIPSKRWICTSVLAR 101
           I +          LA 
Sbjct: 371 ICMDG--VDD---LAY 381


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
          Length = 1528

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
           D      +   + ++    E  + VAHN+ F+    +   K   + +     + T  LAR
Sbjct: 491 DVDNAPELEDVMKRFKEWSEDCVLVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLALAR 550

Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135
                       +  N++   T  E+ K  + RF
Sbjct: 551 VL-YHHQY---GVYWNYATDATIDEKFKRKMKRF 580


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDE-----PVK---------LWDR 47
            DIET    PL    +   A   E   I    +   + E      ++         +   
Sbjct: 516 FDIETTGFSPLKNKIIEIGAVKVENGKIVDRFSTFVNPEVPIPFEIEKLTSISDNMVLGA 575

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLARTN 103
            +   +    L++  D   + VAHN+ F+    +      I  K +      T  +AR  
Sbjct: 576 PKIEEVLPKFLEFCSDA--VMVAHNASFDMSFIRH--NAMIQGKSFEPTVLDTVSMARFL 631

Query: 104 GLPSS---LKNACLALNFS 119
               +   L      L  S
Sbjct: 632 LPNLNRFKLDTVAKELRIS 650


>gi|470326|gb|AAA17543.1| mitochondrial DNA polymerase [Saccharomyces cerevisiae]
          Length = 1254

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G   +   +  +  +     L  + T+  A  + E      +R     +      +  
Sbjct: 756 IYGAGAKFASQLLKRFNP---SLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESI 812

Query: 558 VHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
           +   L S             C    +   + +R  ++        +Q+   D   +LC  
Sbjct: 813 LFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCS 872

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +++HDEI     +   +   
Sbjct: 873 MEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 907


>gi|71275157|ref|ZP_00651444.1| Ribonuclease D [Xylella fastidiosa Dixon]
 gi|71163966|gb|EAO13681.1| Ribonuclease D [Xylella fastidiosa Dixon]
          Length = 362

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E        + G +       + L   A +DE + +        M   L  +L 
Sbjct: 21  RIGMDTE------FIREGTFW----PELALVQIAIEDEILLVDPLVPG--MTDALGLWLA 68

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98
              V+ + H++  + I FK   G  +  +    T +
Sbjct: 69  APNVIKIMHSASEDLIAFKYACG--VLPRPLFDTQI 102


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 32/140 (22%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           GI       + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 32/140 (22%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 435 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 493

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           GI       + T  LAR
Sbjct: 494 MVKGSDPIDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELAR 553

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 554 FLYPHFKNHRLNTLTKKFNI 573


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 44/189 (23%), Gaps = 50/189 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ------- 50
            +  D ET             Y    VI L A   +   V     +  D           
Sbjct: 426 YVIFDTETTGL-------SAQY--DKVIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTIN 476

Query: 51  ---------------SAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSK 91
                            +     ++ +D   + V HN+ F+        ++   +++  +
Sbjct: 477 LTSITDDMVRGSKSEEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERH-NMEMIQE 533

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPP 144
            WI T  LAR          L      LN             E    I        +   
Sbjct: 534 PWIDTLPLARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQ 593

Query: 145 YDCTRANHV 153
                  + 
Sbjct: 594 ILYHDDFNK 602


>gi|190407627|gb|EDV10894.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae RM11-1a]
          Length = 1254

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G   +   +  +  +     L  + T+  A  + E      +R     +      +  
Sbjct: 756 IYGAGAKFASQLLKRFNP---SLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESI 812

Query: 558 VHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
           +   L S             C    +   + +R  ++        +Q+   D   +LC  
Sbjct: 813 LFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCS 872

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +++HDEI     +   +   
Sbjct: 873 MEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 907


>gi|151945409|gb|EDN63652.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae YJM789]
 gi|207340866|gb|EDZ69085.1| YOR330Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1280

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G   +   +  +  +     L  + T+  A  + E      +R     +      +  
Sbjct: 782 IYGAGAKFASQLLKRFNP---SLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESI 838

Query: 558 VHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
           +   L S             C    +   + +R  ++        +Q+   D   +LC  
Sbjct: 839 LFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCS 898

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +++HDEI     +   +   
Sbjct: 899 MEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 933


>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
 gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
          Length = 237

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 34/154 (22%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           M ++ +D ET               E   + L            +   ++   P  +   
Sbjct: 1   MRQVVLDTETTGIGDG-----HRIIEIGCVELVGRKLTGRHYHQYINPQREVDPEAMEVH 55

Query: 59  ----QYLRDETV---------------MCVAHNSLFERIL----FKKTLGID--IPSKRW 93
               ++L D+ V                 V HN+ F+       F K             
Sbjct: 56  GITDEFLADKPVFAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGV 115

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
           + T  LAR    G  +SL   C  L       ++
Sbjct: 116 LDTLTLARKMYPGQRNSLDALCRRLGIDNSHREL 149


>gi|83578108|ref|NP_014975.2| Mip1p [Saccharomyces cerevisiae S288c]
 gi|1706509|sp|P15801|DPOG_YEAST RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1163066|emb|CAA89977.1| MIP1 [Saccharomyces cerevisiae]
 gi|285815200|tpg|DAA11093.1| TPA: Mip1p [Saccharomyces cerevisiae S288c]
          Length = 1254

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G   +   +  +  +     L  + T+  A  + E      +R     +      +  
Sbjct: 756 IYGAGAKFASQLLKRFNP---SLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESI 812

Query: 558 VHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
           +   L S             C    +   + +R  ++        +Q+   D   +LC  
Sbjct: 813 LFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCS 872

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +++HDEI     +   +   
Sbjct: 873 MEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 907


>gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
 gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
          Length = 450

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 67  MCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSE 120
           + VAHNS F+  L +      G+       +CT  L+RT        +L         + 
Sbjct: 98  LLVAHNSRFDYTLLRNEFRRAGVPFA-TPTLCTVKLSRTLYPNEHKHNLDAVANRFGLTS 156

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                  GK   A      +          ++   WQ       +
Sbjct: 157 D------GKRHRAWADVAILADFLQAALL-DNADRWQKIALSLIQ 194


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 44/189 (23%), Gaps = 50/189 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ------- 50
            +  D ET             Y    VI L A   +   V     +  D           
Sbjct: 426 YVIFDTETTGL-------SAQY--DKVIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTIN 476

Query: 51  ---------------SAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSK 91
                            +     ++ +D   + V HN+ F+        ++   +++  +
Sbjct: 477 LTSITDDMVRGSKSEEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERH-NMEMIQE 533

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPP 144
            WI T  LAR          L      LN             E    I        +   
Sbjct: 534 PWIDTLPLARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQ 593

Query: 145 YDCTRANHV 153
                  + 
Sbjct: 594 ILYHDDFNK 602


>gi|256272554|gb|EEU07533.1| Mip1p [Saccharomyces cerevisiae JAY291]
          Length = 1254

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G   +   +  +  +     L  + T+  A  + E      +R     +      +  
Sbjct: 756 IYGAGAKFASQLLKRFNP---SLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESI 812

Query: 558 VHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
           +   L S             C    +   + +R  ++        +Q+   D   +LC  
Sbjct: 813 LFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCS 872

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +++HDEI     +   +   
Sbjct: 873 MEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 907


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPSRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG   P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 217

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 26/142 (18%)

Query: 4   LFIDIETRSPQPLP----------KVGVWAYAEQAVIT---LCAYA--WDDEPVKLWDRT 48
           + +D ET    P            KV      +            +   ++      D  
Sbjct: 11  IVLDFETSGMAPQRGDRAIEVGAVKVNDGRIVDHFESLMNPGFRVSSFIEEFTGITNDEL 70

Query: 49  EQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLART 102
            +      +     +++       VAHN+ F++   K       +    R+ C+ ++AR 
Sbjct: 71  RRAPRCEEVMHQFSEFI--GGAPLVAHNASFDQRFLKSEFARIGECKLLRFGCSMLVARR 128

Query: 103 N---GLPSSLKNACLALNFSEH 121
                    L       N    
Sbjct: 129 LYPEAPNHKLATLVAYKNLPSQ 150


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 44/189 (23%), Gaps = 50/189 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ------- 50
            +  D ET             Y    VI L A   +   V     +  D           
Sbjct: 426 YVIFDTETTGL-------SAQY--DKVIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTIN 476

Query: 51  ---------------SAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSK 91
                            +     ++ +D   + V HN+ F+        ++   +++  +
Sbjct: 477 LTSITDDMVRGSKSEEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERH-NMEMIQE 533

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPP 144
            WI T  LAR          L      LN             E    I        +   
Sbjct: 534 PWIDTLPLARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQ 593

Query: 145 YDCTRANHV 153
                  + 
Sbjct: 594 ILYHDDFNK 602


>gi|1420721|emb|CAA99652.1| MIP1 [Saccharomyces cerevisiae]
          Length = 1280

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557
           + G   +   +  +  +     L  + T+  A  + E      +R     +      +  
Sbjct: 782 IYGAGAKFASQLLKRFNP---SLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESI 838

Query: 558 VHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEG 613
           +   L S             C    +   + +R  ++        +Q+   D   +LC  
Sbjct: 839 LFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCS 898

Query: 614 M---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
           M            + +++HDEI     +   +   
Sbjct: 899 MEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 933


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 25/139 (17%)

Query: 6   IDIETRS-------PQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRT-------- 48
           ID+ET            L  +G+ A    EQ+V++L     D  P  +   T        
Sbjct: 20  IDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPTHVHGLTAAMLEDQP 79

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFER---ILFKKTLGIDIPSKRWICTSVLARTNGL 105
           + + +  D+++ LR      VAHN  F+        +  GI++P    +CT  LAR   L
Sbjct: 80  QFADIAGDVVEVLR--GRTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELARRLDL 137

Query: 106 P---SSLKNACLALNFSEH 121
                 L+        ++ 
Sbjct: 138 GIDNLRLETLAAYWGVTQQ 156


>gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
 gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
          Length = 177

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 58  LQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL---PSSLKN 111
           ++ L    ++ VAHN+ F+  + KK+     I  P    I T   +R          L  
Sbjct: 73  IRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRALIPNLKNYRLDT 132

Query: 112 ACLALNFS 119
               LN  
Sbjct: 133 VSNQLNID 140


>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           DSM 319]
 gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium DSM 319]
          Length = 933

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL-- 105
             +   +++ L D     VAHN  F+    +      G +      + T  LAR      
Sbjct: 72  EEISPKIIELLDDA--YFVAHNVAFDLTFLQEELYQCGRETLYNSTVDTVELARILLPTV 129

Query: 106 -PSSLKNACLALNFSEHL 122
               L      L+     
Sbjct: 130 DGYKLSQLAEYLHIEHEN 147


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 32/140 (22%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           GI       + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|262342183|gb|ACY54602.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +          + +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSSFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 176

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 39/144 (27%)

Query: 4   LFIDIETR-------SPQPLPKVGVWAYAEQA--------------VITLCAYAWDDEPV 42
           + ID ET            L ++      EQ                I            
Sbjct: 10  VAIDFETSGYAAHSACAVGLARIEDGRVTEQFYSLVRPPSSRVLFTEIHGL--------- 60

Query: 43  KLWDRTEQSAMPSDLLQYLRD---ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICT 96
             W   + + +  D+   +        + +AHN+ F+R +     +  G  +P + ++CT
Sbjct: 61  -TWPMLKNAPVFGDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVPEQHFLCT 119

Query: 97  SVLAR--TNGLPSSLKNACLALNF 118
              AR         L + C     
Sbjct: 120 LKGARRSLPLPSKKLNHVCEHFGI 143


>gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
 gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
          Length = 210

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRPFEVRLRAPQSLDSSSVKIHQMRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPS------KRWI 94
           D  +       L++ L        V ++  +++ +     ++ LG  +P+      + + 
Sbjct: 90  DLVDGLDEKQALIKLLEFVGNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL   C  L+        
Sbjct: 150 D-KLERHLPNAYFDLSLDAICKHLDLPIQDKHD 181


>gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 59/233 (25%), Gaps = 49/233 (21%)

Query: 2   SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITLCAY-------------AWDDEPVK 43
             + +D ET      S   +    +   A    I    +             + +   +K
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGA--VEIIDRCFTGNNFHVYIQPGRSIESGALK 62

Query: 44  LWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI---DIPSKRW- 93
           +   T        +  D+     +  +  + V HN+ F+     + L I    I    + 
Sbjct: 63  VHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFC 122

Query: 94  --ICTSVLARTNGLPSS--LKNACLALN--------FSEHLTKMEEGKALIARFCKGSID 141
             I T  +AR         L   C             S  +     GK            
Sbjct: 123 SIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGK---LYLLMTGGQ 179

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
              +     N+ + ++   +   +    T  +   L P            Q +
Sbjct: 180 DSLFSDNTINYKENFKKLKK-NIQLKNNTLRI---LHPTLKENDLHEKYLQYM 228


>gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO]
 gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
 gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO]
 gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
          Length = 201

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 33/152 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L  V V      ++            E    W        
Sbjct: 25  MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 79

Query: 46  ---DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICT 96
              D       P     +  Y + +  + VAHN+ F+  +    L    +    +  +CT
Sbjct: 80  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 138

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKM 125
              +R          L   C  LN        
Sbjct: 139 VKSSRRLFPEFPNHRLNTVCENLNIQLDHHHD 170


>gi|320183816|gb|EFW58649.1| Ribonuclease D [Shigella flexneri CDC 796-83]
 gi|332096395|gb|EGJ01392.1| ribonuclease D [Shigella boydii 3594-74]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +L+   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILSAFCGRPMS 111


>gi|262212281|gb|ACY35757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 38/139 (27%), Gaps = 13/139 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWI-AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           RS    S+    V +D +G+E R L    +  D    A         T  A+ + T    
Sbjct: 13  RSLFKPSDNHLQVGSDASGLEPRCLGHYLSRYDGSKFAEEVVNGDIHTALAEIYGTDRKS 72

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHH 482
                   GK +   L Y GG           G      S+   +            +  
Sbjct: 73  --------GKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADL 121

Query: 483 LWMQDQYPEFAVKDKLIGT 501
                +  +  V   L G 
Sbjct: 122 NAAIQERAKSGVLKGLDGR 140


>gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94]
 gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +L+   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILSAFCGRPMS 115


>gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
 gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
          Length = 205

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 43/153 (28%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP 54
           M  +  +D ET    P          E AVI L          ++ DR +        +P
Sbjct: 1   MQTVAVLDFETTGLSPNMG---DRATEIAVILL-------RDGQVVDRFQSLMNAGRRIP 50

Query: 55  SDLLQY--LRDE---------TVMC-----------VAHNSLFERILFKKTLGI--DIPS 90
           SD++    + +E          VM            VAHN+ F++  ++  LGI      
Sbjct: 51  SDVVALTGITNEMIAAAPPASNVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGILGMSAE 110

Query: 91  KRWICTSVLARTN---GLPSSLKNACLALNFSE 120
             + CT ++AR          L +    L   +
Sbjct: 111 HAFACTMLVARRIYPDAQSHRLSSLVDMLRLPK 143


>gi|300087681|ref|YP_003758203.1| hypothetical protein Dehly_0570 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527414|gb|ADJ25882.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 192

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 41/165 (24%), Gaps = 20/165 (12%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIET         G+        +         +  +          P +LL  +    
Sbjct: 26  LDIETT--------GLSPQCCDITVIGIHLFKPPDREEFVQLVGDDITPKNLLAAMEGIG 77

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRW--ICTSVLARTNGLPSSLKNACLALNFSEHLT 123
            +   + + F+    +  LG+D+ +                         L     +   
Sbjct: 78  RLFTFNGARFDLPWIRHHLGLDLSAGGIEHYDLM---YYCHRRH------LFGGLKKIEP 128

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
            +   ++L       ++          +H  A      Y K D  
Sbjct: 129 LLGIPRSLPEMNGYQAVKLWWRYINDFDHQ-ALATLLAYNKEDTR 172


>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
 gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
          Length = 411

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 31/184 (16%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHN 72
               +   + Y+++A +       +     L D          DL   + D     + H 
Sbjct: 54  LDAERASGYRYSQRAYLV--QLRREGSGTHLVDPIGFGG--LEDLDDAIGDAE--WILHA 107

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKAL 131
           +  +     +   I +  +    T    R   LP   L                  G++L
Sbjct: 108 ATQDLPCLAE---IGLRPRALFDTEHAGRLLNLPRVGLATLVEHF----------LGRSL 154

Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
                  + +    D +     + W +   Y   DVE   EL   L              
Sbjct: 155 -------AKEHSAADWSTRPLPEPWLV---YAALDVEVLVELRDLLDAELREAGKREWAA 204

Query: 192 QTIN 195
           Q   
Sbjct: 205 QDFE 208


>gi|224368019|ref|YP_002602182.1| hypothetical protein HRM2_09050 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690735|gb|ACN14018.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 277

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 32/169 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           +++DIET   +P  +                                   P ++ QY   
Sbjct: 87  VYLDIETTGLEPSYESITTIALYD----GITIR------YYVKGENLDRFPEEISQY--- 133

Query: 64  ETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFS 119
                V +N   F+    +   GI +          L       G    LK     L   
Sbjct: 134 --KAIVTYNGKCFDVPFIEHEFGIRLDQVHID----LRYILKSLGFRGGLKGCERMLGLD 187

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                  +G                 D  R    +  +    Y   DV 
Sbjct: 188 RGDLDGVDGY---------FAILLWNDYMRNKDRRVLETLLAYNIEDVV 227


>gi|71898238|ref|ZP_00680412.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71731977|gb|EAO34034.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 339

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
            + L   A +DE + +        M   L  +L    V+ + H++  + I FK   G  
Sbjct: 13 PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 68

Query: 88 IPSKRWICTSV 98
          +  +    T +
Sbjct: 69 VLPRPLFDTQI 79


>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. natto BEST195]
          Length = 931

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 39/148 (26%), Gaps = 19/148 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+  ++ Q L  +    VAHN  F+    K  L   G  +P    + T  L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               L      L              E   LI       +   PY           QL  
Sbjct: 131 EGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY-------PTLKQLRR 183

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLW 188
                  + T  L   +      E   +
Sbjct: 184 LSQHFISDLTHLLDMFINENRHTEIPGY 211


>gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165]
 gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165]
          Length = 375

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 102/371 (27%), Gaps = 82/371 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           + +D E     T                   + L    +D + V L D    T+ S   +
Sbjct: 29  IALDTEFVRTRTYY---------------PKLGLIQL-FDGKQVYLIDPLSITDFSPFTA 72

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
                L +E V+ V H    +  +F+         +  + T V+A   GL  S       
Sbjct: 73  ----LLANENVLKVLHACGEDLEVFQHYFKQ--LPQPMLDTQVMAGFVGLGIS------- 119

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                       G A +A              T        ++  +Y   DV     ++ 
Sbjct: 120 -----------IGFAKLALHYLEVELDKGASRTDWLSHPLSEIQLQYACADVWYLLPIYH 168

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +L                           +V +   L+A+   ++ ED  K    I  + 
Sbjct: 169 KLAEDLAK---------------TPWQTAVVEECATLLAKR--QIVEDPNKAYKEISNAW 211

Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNT 294
           +        L +        +++  ++        +  + K+  L  L  +       + 
Sbjct: 212 QLNQQELAILQI--------LAKWRIEEAEKRDLALNFIIKEQSL--LQIAKLQPKHTSI 261

Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353
           L E +  +  R+ G    +   +     G    P+N P   R             R +  
Sbjct: 262 LLEFMHPNEVRIHGKKILWLVEQ-----GKQILPENYPPVIRRLVDEAGYKTTFKRLQKR 316

Query: 354 ADPLGLASDCV 364
              +   +  +
Sbjct: 317 LTEVCPENLAI 327


>gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 189

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 22/117 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL-----CAYAWD--DEPVKLWD------- 46
           M  +F+D ET   +P     +        + +       +  +  +   +          
Sbjct: 1   MK-VFLDTETTGLEPGQIAQISYIISDDDLNIQKAENIYFKVNSMETKAQSVHGLSIEKL 59

Query: 47  --RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS 97
              ++  +      Q L D +  + + HN  F+           GI+   K++ CT 
Sbjct: 60  ELLSDGKSFTDHANQILDDIDQKILICHNVPFDYKFLNSEFVRCGIEYDPKKF-CTM 115


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPSRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG   P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
 gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
          Length = 241

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 43/153 (28%)

Query: 2   SKLFIDIETRSPQP------------------LPKVGVWAYAEQAVITLCAYAWDDEPVK 43
             + +D ET    P                  L       Y     I       DD  ++
Sbjct: 9   RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPERI------IDDGAIE 62

Query: 44  LWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDI 88
           +   T Q        + +  D + +++D     V HN+ F+               G   
Sbjct: 63  VHGITNQFLEDKPCFADVVKDFIAFIQDAE--LVIHNAPFDVGFINYEFSRLNSQTGTVT 120

Query: 89  PSKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
              +   T   AR    G  +SL   C      
Sbjct: 121 DYSKVFDTLTYARKKHPGQRNSLDALCKRYGID 153


>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
 gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
          Length = 238

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 37/155 (23%), Gaps = 41/155 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE-------QAVITL--CAYAWDDEP--------VK 43
           M ++ +D ET    P          E          +T     Y  + E         V 
Sbjct: 1   MRQVVLDTETTGLNPTKG---DRIVEVGCVEMVDRKLTGRHFHYYINPERDIPDEVVAVH 57

Query: 44  LWDRTEQSAMPS------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-------- 89
             D  +    P       +L  +L       V HN+ F+                     
Sbjct: 58  GIDNDKVKDSPKFRDIAVELWTWLE--GAELVIHNAAFDMGFLNAEFERFAQEQREPFEK 115

Query: 90  ---SKRWICTSVLAR--TNGLPSSLKNACLALNFS 119
                  + T  +AR    G   SL   C      
Sbjct: 116 LETVCGVLDTLKVARDKHPGSKVSLDALCKRYGID 150


>gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 383

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 21/168 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D  + L D   Q          + D+ V+ V H +  +  +    LG  
Sbjct: 37  PQLCLIQVASQDITI-LIDPMVQDINLQPFFDLMIDKKVVKVFHAARQDIEII-YHLG-G 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V     G                           I + C G         
Sbjct: 94  IIPSPLFDTQVAGSICGFG------------------DSISYDQIVQRCTGHHLDKSSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
           T  +     +    Y   DV   R+++  L    + ++    +   + 
Sbjct: 136 TDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMT 183


>gi|262342197|gb|ACY54609.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRHDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212289|gb|ACY35761.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212305|gb|ACY35769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212239|gb|ACY35736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSNASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 39/148 (26%)

Query: 3   KLFIDIETRSPQP------------------------LPKVGVWAYAEQAVITLCAYAWD 38
            + +D ET    P                        L K       + + IT       
Sbjct: 14  FVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEML 73

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
           +             +  + L +L D   + VAHN+ F+        KK +G+D   + +I
Sbjct: 74  ENK------RSIEEVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYI 124

Query: 95  CTSVLARTNGL--PSSLKNACLALNFSE 120
            T  LA++       SL +    L    
Sbjct: 125 DTLALAKSLLKLRSYSLDSVVEKLGLGP 152


>gi|160876618|ref|YP_001555934.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|160862140|gb|ABX50674.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|315268815|gb|ADT95668.1| 3'-5' exonuclease [Shewanella baltica OS678]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D ETR+             +   ++L   A  D    L+         + L   L D
Sbjct: 133 LGFDTETRASF-------ERGVQHP-LSLIQIATAD-ACYLFQHAILGEQFTQLKTVLED 183

Query: 64  ETVMCVAHNSLFERILFKKTLGIDI 88
           E ++ V      +    K+  GI++
Sbjct: 184 ENILKVGVGLRSDAQALKRQWGINV 208


>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
 gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
          Length = 931

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 39/148 (26%), Gaps = 19/148 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+  ++ Q L  +    VAHN  F+    K  L   G  +P    + T  L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               L      L              E   LI       +   PY           QL  
Sbjct: 131 EGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY-------PTLKQLRR 183

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLW 188
                  + T  L   +      E   +
Sbjct: 184 LSQHFISDLTHLLDMFINENRHTEIPGY 211


>gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735]
 gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735]
          Length = 162

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 37/147 (25%), Gaps = 35/147 (23%)

Query: 1   MSKLF-IDIET-------RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-------- 44
           M     ID ET            L  +     A++            EP           
Sbjct: 1   MKDFAAIDFETANNERTSVCSVGLVVMRDGKIADRFYSL-----IHPEPDYYTYWNTRVH 55

Query: 45  ----WDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                D       P     +   + +  +  VAHN  F+    K   +   +D P   + 
Sbjct: 56  GLTQADTNHAPIFPEVWCKVEPLIVN--LPLVAHNKAFDESCLKAVFRCYQMDYPDYSFY 113

Query: 95  CTSVLARTNGL--PSSLKNACLALNFS 119
           CT   +R        +L        + 
Sbjct: 114 CTLAQSRRVWPQGHHNLDIIAARCGYD 140


>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 954

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 38/148 (25%), Gaps = 19/148 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+  ++   L  +    VAHN  F+    K  L   G  +P    + T  L+R      
Sbjct: 96  EAVAEEVFHLL--DGAYFVAHNIHFDLGFVKYELHKAGFHLPDCEVLDTVELSRIVFPGF 153

Query: 106 -PSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               L      L              E   LI       +   PY           QL  
Sbjct: 154 EGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY-------PTLKQLRR 206

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLW 188
                  + T  L   +      E   +
Sbjct: 207 LSQHFISDLTHLLDMFIYENRHTEIPGY 234


>gi|262342171|gb|ACY54596.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212287|gb|ACY35760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212277|gb|ACY35755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212271|gb|ACY35752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212247|gb|ACY35740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212251|gb|ACY35742.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212253|gb|ACY35743.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212257|gb|ACY35745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212267|gb|ACY35750.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212303|gb|ACY35768.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342155|gb|ACY54588.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342159|gb|ACY54590.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342169|gb|ACY54595.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212245|gb|ACY35739.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212215|gb|ACY35724.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRILGIR 151


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 27/144 (18%)

Query: 3   KLFIDIETR--SPQP--LPKVGVWAYAEQAVITLCAYAWDDEPV--KLW----------- 45
            +  DIET   SP    + ++G        VI   ++  + E     +            
Sbjct: 437 YVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDNFSHFVNPERSIPYVITELTSINNDMV 496

Query: 46  -DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
            D      +    +++  D   + VAHN+ F+    KK    LGID      + T  LAR
Sbjct: 497 RDAETIEILLPKFMEFCADS--VLVAHNAAFDTGFIKKNCRDLGIDFN-YSIMDTVPLAR 553

Query: 102 TNGLPS---SLKNACLALNFSEHL 122
                     L      L  S   
Sbjct: 554 FLCPDLKKVKLNLVAKHLGISLDN 577


>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. SMY]
 gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
           ...; putative [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 931

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 39/148 (26%), Gaps = 19/148 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+  ++ Q L  +    VAHN  F+    K  L   G  +P    + T  L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               L      L              E   LI       +   PY           QL  
Sbjct: 131 EGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY-------PTLKQLRR 183

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLW 188
                  + T  L   +      E   +
Sbjct: 184 LSQHFISDLTHLLDMFINENRHTEIPGY 211


>gi|163846078|ref|YP_001634122.1| exonuclease-like protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523812|ref|YP_002568282.1| exonuclease-like protein [Chloroflexus sp. Y-400-fl]
 gi|163667367|gb|ABY33733.1| exonuclease-like protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447691|gb|ACM51957.1| exonuclease-like protein [Chloroflexus sp. Y-400-fl]
          Length = 168

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 27/173 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIET     +  +G++ +                   +            L + L   +
Sbjct: 5   LDIETTYSGTMSVIGIYRHDRG----------------VIQLVGGGIRDVALYEALEAVS 48

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124
            +   + S F+  + K+ L  D+ ++          R  GL   LK     L  +   + 
Sbjct: 49  TIVTFNGSSFDLPVIKRQLQADLRAEFAHRDLLHECRRRGLRGGLKGVEERLGITRVSSG 108

Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
              G+                   +     A Q   +Y + DV     L   L
Sbjct: 109 -LTGRDAPRL---------WERYEQYADQLALQTLLDYNRDDVVNLAVLEALL 151


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 29/140 (20%)

Query: 2   SKLFIDIETR----SPQPLPKVGVWAYAEQAVI-----------TLCAYAWDDEPVK--- 43
           S +  DIET     S   + ++G     E   I               +  +        
Sbjct: 491 SYVVFDIETTGFSSSRNRIIEIGAVK-VENGTIADKFSTFVNPDVPIPFEIEKLTGINDN 549

Query: 44  -LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVL 99
            +    + + +    L++  +   + VAHN+ F+          L +       I T  L
Sbjct: 550 MVLPYPKINEILPRFLEFCGNS--VLVAHNAAFDVSFIAYNAARLNLAFEPT-VIDTVAL 606

Query: 100 ARTNGLPSS---LKNACLAL 116
           AR      +   L     AL
Sbjct: 607 ARLLLPNLNRYKLDTVAKAL 626


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 38  DDEPVKLW--------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-- 87
           D  PV +         D      +   +   L+D   + VAHN+ F+             
Sbjct: 63  DPGPVHIHGLTAERLRDAPAFEQVAGRIGALLQD--RVMVAHNAQFDYDFLAHEFARARL 120

Query: 88  -IPSKRWICTSVLARTNGLPS---SLKNACLALNFSEH 121
            +P  + +CT  L R    P+   SL +        + 
Sbjct: 121 CLPVNQRLCTLALNRRVEPPAADLSLASLAAHYGVPQT 158


>gi|262212269|gb|ACY35751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAMQERAKSGVLKGLDGR 140


>gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435]
 gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 35/144 (24%)

Query: 3   KLFIDIETR-------SPQPLPKVGVWAYAEQA---------------VITLCAYAWDDE 40
            + +D ET            + KV      E                  +          
Sbjct: 41  FIALDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGIT------ 94

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT- 96
           P  + D      +   ++Q++  + +  VAHN+ F+  +     K L I+ PS  + C+ 
Sbjct: 95  PEDVIDAPSFEYVFPYMMQFI--DKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSY 152

Query: 97  SVLARTNG-LPSSLKNACLALNFS 119
            +  RT       LK+        
Sbjct: 153 QLAKRTIDAYRYGLKHLMKHYKLD 176


>gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
 gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
          Length = 374

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 51/195 (26%), Gaps = 36/195 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSD 56
           ++ +D E     T                   + L    +D E + L D  T     P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113
               LRDE V    H    +  +F  T G       +I T +LA   G P S        
Sbjct: 66  FQALLRDEEVTKFLHAGSEDLEVFLNTFG--TLPTPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 114 LALNFSEHLTK---MEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRD 166
             +  S   ++       + L  + C  +        P         +            
Sbjct: 124 DYMGVSLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTETAGWMNAALDEC 183

Query: 167 VEATRELFKRLIPLS 181
           +   +     L P  
Sbjct: 184 LLLCQRKQDILAPAL 198


>gi|304410319|ref|ZP_07391938.1| 3'-5' exonuclease [Shewanella baltica OS183]
 gi|307301970|ref|ZP_07581728.1| 3'-5' exonuclease [Shewanella baltica BA175]
 gi|304351728|gb|EFM16127.1| 3'-5' exonuclease [Shewanella baltica OS183]
 gi|306914008|gb|EFN44429.1| 3'-5' exonuclease [Shewanella baltica BA175]
          Length = 316

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D ETR+             +   ++L   A  D    L+         + L   L D
Sbjct: 134 LGFDTETRASF-------ERGVQHP-LSLIQIATAD-ACYLFQHAILGEQFTQLKTVLED 184

Query: 64  ETVMCVAHNSLFERILFKKTLGIDI 88
           E ++ V      +    K+  GI++
Sbjct: 185 ENILKVGVGLRSDAQALKRQWGINV 209


>gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1]
 gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli 1180]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227]
 gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227]
          Length = 375

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +L+   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILSAFCGRPMS 115


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 1447

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 41/148 (27%), Gaps = 38/148 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQ 59
            ID  T     L   G  A  E+              +   D        +  +P+ +++
Sbjct: 419 SIDT-TYCVLDLETTGFSAATEKITEIGI-MKIQGGKI--IDQFGCFVNPEKPIPARVVE 474

Query: 60  Y--LRD-------------ETVM-------CVAHNSLFERILFK---KTLGIDIPSKRWI 94
              + D               ++        VAHN+ F+    K   K LG D     ++
Sbjct: 475 VTNITDDMVRDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD-YTYL 533

Query: 95  CTSVLARTNGL---PSSLKNACLALNFS 119
            T  LA+          L      L   
Sbjct: 534 DTLSLAKELFPDYKTYKLGRIAKNLGIK 561


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 50/204 (24%), Gaps = 46/204 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVK-LWDRTEQSA----------- 52
           +D+ET               +   IT  A+  +D   V                      
Sbjct: 46  VDLETT----------GGSFDTDRITEIAFLRFDGGTVTPYHSLVHPERPIPPFIRRLTG 95

Query: 53  --------------MPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWIC 95
                         +  +LL  LR    + +AHNS F+    ++     G+       +C
Sbjct: 96  IGDETVAGAPPFSALAHELLPLLR--GCILLAHNSKFDYTFLRRAFARCGLPFA-APTLC 152

Query: 96  TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152
           T  L+R         SL++       +           L       +        T A H
Sbjct: 153 TVQLSRRLYPQFYKHSLESIIERHGIAAASRHRATDDVLAVADYLETALREQGSETFAAH 212

Query: 153 VQAWQLFGEYCKRDVEATRELFKR 176
                              +L+  
Sbjct: 213 ACHLLQPKLPSALPAALEEQLYAL 236


>gi|320162698|gb|EFW39597.1| DNA polymerase gamma [Capsaspora owczarzaki ATCC 30864]
          Length = 1596

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 53/249 (21%)

Query: 64  ETVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTSVLART-------------------- 102
              + V H   ++R  +  +   I     R++ T+ L                       
Sbjct: 359 PPRLVVGHRVSYDRARILDEYF-IRDSGLRFVDTASLHMCVTGERRERANSPFPKRTTLP 417

Query: 103 ---NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                   SLK+ C      E ++K                     + +  +    ++L 
Sbjct: 418 TNDLADSGSLKDLCQFY-LGEEVSKD--------------ARDIFVNGSLQDVADNFELL 462

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDLVLKLQELIAQE 216
             YC  DV +T  L+ +L+P    +    +    + + G     ID              
Sbjct: 463 MAYCANDVRSTYRLYAKLLPAYMHKCPNPVSFAGMLEMGSCYLPIDATW----------Y 512

Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276
                   +      + +          L L          +      L + +     + 
Sbjct: 513 NFIAQGQAMYSESSGLVNLSLQQMATEALALAQVDPATGRPKYESDPWLRNLDWHAEPQR 572

Query: 277 LILNRLASS 285
           +   +    
Sbjct: 573 MTKEKRNKK 581


>gi|30062942|ref|NP_837113.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|56479892|ref|NP_707318.2| ribonuclease D [Shigella flexneri 2a str. 301]
 gi|30041191|gb|AAP16920.1| RNase D [Shigella flexneri 2a str. 2457T]
 gi|56383443|gb|AAN43025.2| RNase D [Shigella flexneri 2a str. 301]
 gi|313649164|gb|EFS13598.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 383

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 20/151 (13%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
            D              + DE ++ V H +  +       LG  I       T +     G
Sbjct: 53  IDPMVPDIDLQSFFDLMVDEKIVKVFHAARQDIETI-YHLG-GIIPYPLFDTQIAGSICG 110

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
                                      I + C G         T  +H    +    Y  
Sbjct: 111 FG------------------DSISYDQIVQRCTGHHLDKSSRFTDWSHRPLSEKQLLYAL 152

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            DV   R+++  L    +  +    +D  + 
Sbjct: 153 ADVTYLRDVYLSLKKKLEKNKRTHWMDDELE 183


>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
 gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
          Length = 422

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 35/197 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E        + G + Y + A +       +D    L D T        L   +  
Sbjct: 58  VALDTE--------RAGAFRYFQGAYLV--QLRREDTGTFLIDPTAF-PDLEPLGTAI-- 104

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H++  +     +   I +  K    T + A+                      
Sbjct: 105 GKAEWILHDATTDMPWLAE---IGMRPKLLFDTELAAKLLNF--------ERFGLGSLT- 152

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +   G           +    +     +     Q + EY   DVE   +L + L      
Sbjct: 153 EQVLG----------IMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGE 202

Query: 184 ERDLWLLDQTINDRGYR 200
                  +Q      Y 
Sbjct: 203 AGKDDWAEQEFEHLLYF 219


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 37/145 (25%), Gaps = 38/145 (26%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---------------------- 46
           ET     +   G+ A     +I L A    D  +   D                      
Sbjct: 427 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEI--IDRFMLFANPGHPLSVTTMELTGI 483

Query: 47  ---RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTS 97
                + +  P ++L    D       VAHN+ F+         +     I     I T 
Sbjct: 484 TDEMVKDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIA-NPVIDTL 542

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
            LAR          L   C   +  
Sbjct: 543 ELARFLYPDLKNHRLNTLCKKFDIE 567


>gi|282879684|ref|ZP_06288414.1| hypothetical protein HMPREF9019_2159 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306353|gb|EFA98383.1| hypothetical protein HMPREF9019_2159 [Prevotella timonensis CRIS
           5C-B1]
          Length = 426

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 12/83 (14%)

Query: 49  EQSAMPSDLLQYLRDE---TVMCVAH--NSLFERILFKKTLGIDIPSKRWICT---SVLA 100
           ++  +P ++ + L      +V  V H  N  F+    K      I   R + T    + +
Sbjct: 260 QKENIPEEMKEALLKPTTDSVAFVNHSINGDFDIP-LKWQSKGTIKYIRILDTLYDMITS 318

Query: 101 RTNGLPSSLKNACLALNFSEHLT 123
                   L      L+      
Sbjct: 319 SHV---YYLDELGEDLHNDLLYY 338


>gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163]
 gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163]
          Length = 374

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 52/195 (26%), Gaps = 36/195 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSD 56
           ++ +D E     T                   + L    +D E + L D  T     P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113
               LRDE V    H    +  +F  T G       +I T +LA   G P S        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNTFG--TLPTPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 114 LALNFSEHLTK---MEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRD 166
             +  +   ++       + L  + C  +        P         +A           
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTEAAGWMNAALDEC 183

Query: 167 VEATRELFKRLIPLS 181
           +   +     L P  
Sbjct: 184 LLLCQRKQDILAPAL 198


>gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 164

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 29/143 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LCA-----YAWDDEPVK---LWDR 47
           S + +D ET +        +   + E   I      L       Y++ +  V     +D 
Sbjct: 3   SFVALDFETANQYRSSVCSIGLVFVENNEIVDTYYQLIKPAPNFYSYFNTQVHGLSQYDT 62

Query: 48  TEQSAMPSDLLQYLRDETVM---CVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
                 P    + L    +     VAHNS+F+    +       +   +  + CT   AR
Sbjct: 63  ENAPLFPEVWTEIL--PKIKDLPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRAAR 120

Query: 102 -----TNGLPSSLKNACLALNFS 119
                       L        F 
Sbjct: 121 KSLPQLVN--HKLNTVSAYFGFD 141


>gi|149047437|gb|EDM00107.1| rCG36059 [Rattus norvegicus]
          Length = 129

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           + +    ID + + +   L+    KKL+++      G          LR  LF    +
Sbjct: 1   MENHKISIDKEEMERTSALLGAHLKKLEQEAH-FVAGEQFLIMSNNQLREILFGKLKL 57


>gi|217972253|ref|YP_002357004.1| 3'-5' exonuclease [Shewanella baltica OS223]
 gi|217497388|gb|ACK45581.1| 3'-5' exonuclease [Shewanella baltica OS223]
          Length = 320

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D ETR+             +   ++L   A  D    L+         + L   L D
Sbjct: 138 LGFDTETRASF-------ERGVQHP-LSLIQIATAD-ACYLFQHAILGEQFTQLKTVLED 188

Query: 64  ETVMCVAHNSLFERILFKKTLGIDI 88
           E ++ V      +    K+  GI++
Sbjct: 189 ENILKVGVGLRSDAQALKRQWGINV 213


>gi|91092754|ref|XP_973448.1| PREDICTED: similar to GM14514p [Tribolium castaneum]
 gi|270014889|gb|EFA11337.1| hypothetical protein TcasGA2_TC010877 [Tribolium castaneum]
          Length = 237

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 12/143 (8%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDI-- 88
           L   + D +   L   ++   +P  L   L    V     N   +     +   G D+  
Sbjct: 92  LIQISPDLDTCYLIQISDLKKLPKGLSVLLAHPKVRITGVNIKNDIRKLSRDFAGFDVEK 151

Query: 89  PSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
             +  I + VLA          S++     L       KM   K    R  K  +     
Sbjct: 152 NIENCIDSGVLANQILPFQQRWSMERLVTFL------LKMTISKDNKVRMSKWHVSPLSK 205

Query: 146 DCTRANHVQAWQLFGEYCKRDVE 168
           +        A+     Y +    
Sbjct: 206 EQLDYAATDAYASLVLYNELKKR 228


>gi|262342313|gb|ACY54667.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + LCA  + D   V++      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRW------I 94
           D  +  +    LLQ +        V ++  +++ +     +K LG  +P++         
Sbjct: 90  DLHDGLSEKEALLQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL+  C  L+        
Sbjct: 150 D-KLEKHLPNAYFDLSLEAICRHLDLPLQDKHD 181


>gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLWDRTEQ 50
            + +D ET S  P    L  +      +          + L A  + D   VK+     +
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRPFEVRLRAPQSLDSNSVKIHQIRHK 89

Query: 51  SAMP-----SDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPS------KRWI 94
             +        L+Q L        V ++  +++ +     ++ LG  +P+      + + 
Sbjct: 90  DLVDGIDEKQALIQLLEFIGNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL+  C  L+        
Sbjct: 150 D-KLERHLPNAYFDLSLEAICKHLDLPMQNKHD 181


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 48/204 (23%), Gaps = 47/204 (23%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV----------------KLW--- 45
            ID  T     L   G     E+           D  V                ++    
Sbjct: 421 SIDT-TYCVLDLETTGFSPVTEKITEIGI-MKIKDGKVIDTFSTFVNPEKPIPLRVVEVT 478

Query: 46  ----DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICT 96
               D    +     +   + D  +  + VAHN+ F+    K     LG D     ++ T
Sbjct: 479 NITDDMVRNAETIEQVFPKMLDFIKDSVLVAHNAEFDVGFLKHNAKILGCDFD-FTYVDT 537

Query: 97  SVLARTNGL---PSSLKNACLALNFS-------------EHLTKMEEGKALIARFCKGSI 140
             LA+          L      L                         + L  R  +   
Sbjct: 538 LSLAQEVFPDFKTYKLGRIAKNLGIKVEVAHRALDDVATTVKVFNVMLEKLKERGAENLK 597

Query: 141 DSPPYDCTRANHVQAWQLFGEYCK 164
           D   Y    A   + ++    Y  
Sbjct: 598 DIDIYGRDEAAKKEEYKKLKTYHA 621


>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
 gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
          Length = 422

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 35/197 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E        + G + Y + A +       +D    L D T        L   +  
Sbjct: 58  VALDTE--------RAGAFRYFQGAYLV--QLRREDTGTFLIDPTAF-PDLEPLGAAI-- 104

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H++  +     +   I +  K    T + A+                      
Sbjct: 105 GKAEWILHDATTDMPWLAE---IGMRPKLLFDTELAAKLLNF--------ERFGLGSLT- 152

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +   G           +    +     +     Q + EY   DVE   +L + L      
Sbjct: 153 EQVLG----------IMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGE 202

Query: 184 ERDLWLLDQTINDRGYR 200
                  +Q      Y 
Sbjct: 203 AGKDDWAEQEFEHLLYF 219


>gi|262212325|gb|ACY35779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDVHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPSRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG   P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|148807577|gb|ABR13589.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 147

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289
            +      +   L    +   +     +    + +L   +I +    +I   L     A 
Sbjct: 47  FNVXSRKQIAXRLEGVGVKFKLQTEKGAIIVNEKVLEGLDIPE--AKMIYEYLMLQKRA- 103

Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332
            ++++       DGR+   +   GA  TGR +        +P 
Sbjct: 104 AQIDSWXTH-EKDGRVHRRVITNGA-VTGRMTHHCPNLTQVPS 144


>gi|66394984|ref|YP_240953.1| ORF035 [Staphylococcus phage G1]
 gi|62637006|gb|AAX92117.1| ORF035 [Staphylococcus phage G1]
 gi|182627947|gb|ACB89109.1| gp ORF116 [Staphylococcus phage A5W]
          Length = 290

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 19/79 (24%)

Query: 7   DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----------TEQSAMPS 55
           D+ET S +P  K G           + + +W +                    +   +  
Sbjct: 220 DLETNSLKP-DKEGSKP-------LVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271

Query: 56  DLLQYLRDETVMCVAHNSL 74
            L  +L  +  + VAHN  
Sbjct: 272 LLKNWLASKEDIKVAHNGK 290


>gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
 gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
          Length = 375

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL-- 105
            +   L  +L       V HN  F+         +  G  +    ++ T  LA+T     
Sbjct: 126 EILPRLRDFL--GGYTLVGHNVNFDINFLYDRIYRETGEHLN-NPYLDTKKLAKTVVPGL 182

Query: 106 -PSSLKNACLALNF 118
              SL+  C     
Sbjct: 183 SHYSLEALCKHFGI 196


>gi|170019851|ref|YP_001724805.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|256022532|ref|ZP_05436397.1| ribonuclease D [Escherichia sp. 4_1_40B]
 gi|293415119|ref|ZP_06657762.1| ribonuclease D [Escherichia coli B185]
 gi|300951410|ref|ZP_07165251.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|300956696|ref|ZP_07168970.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|301645686|ref|ZP_07245613.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|307138464|ref|ZP_07497820.1| ribonuclease D [Escherichia coli H736]
 gi|331642413|ref|ZP_08343548.1| ribonuclease D [Escherichia coli H736]
 gi|331653208|ref|ZP_08354213.1| ribonuclease D [Escherichia coli M718]
 gi|169754779|gb|ACA77478.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|260449075|gb|ACX39497.1| ribonuclease D [Escherichia coli DH1]
 gi|291432767|gb|EFF05746.1| ribonuclease D [Escherichia coli B185]
 gi|300316496|gb|EFJ66280.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|300449336|gb|EFK12956.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|301076058|gb|EFK90864.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|323937062|gb|EGB33342.1| ribonuclease D [Escherichia coli E1520]
 gi|323940530|gb|EGB36721.1| ribonuclease D [Escherichia coli E482]
 gi|331039211|gb|EGI11431.1| ribonuclease D [Escherichia coli H736]
 gi|331049306|gb|EGI21378.1| ribonuclease D [Escherichia coli M718]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 41/148 (27%), Gaps = 38/148 (25%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQ 59
            ID  T     L   G  A  E+              +   D        +  +P+ +++
Sbjct: 419 SIDT-TYCVLDLETTGFSAATEKITEIGI-MKIQGGKI--IDQFGCFVNPEKPIPARVVE 474

Query: 60  Y--LRD-------------ETVM-------CVAHNSLFERILFK---KTLGIDIPSKRWI 94
              + D               ++        VAHN+ F+    K   K LG D     ++
Sbjct: 475 VTNITDDMVRDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD-YTYL 533

Query: 95  CTSVLARTNGL---PSSLKNACLALNFS 119
            T  LA+          L      L   
Sbjct: 534 DTLSLAKELFPDYKTYKLGRIAKNLGIK 561


>gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024]
 gi|256018008|ref|ZP_05431873.1| ribonuclease D [Shigella sp. D9]
 gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966]
 gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W]
 gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143]
 gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271]
 gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280]
 gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591]
 gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W]
 gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W]
 gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212]
 gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B]
 gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101]
 gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89]
 gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687]
 gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61]
 gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010]
 gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli 1357]
 gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11]
 gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120]
 gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3]
 gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167]
 gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044]
 gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125]
 gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143]
 gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271]
 gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280]
 gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 1482

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 41/152 (26%), Gaps = 43/152 (28%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCA---YAWDDEPVKLWDR-----TEQSAMPS 55
           +F D+ET    P          E   I       Y       K  D      T+  A   
Sbjct: 436 VFFDLETTGLSP----------ELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLKAFTQ 485

Query: 56  DL----LQYLRDE-----------TVMC----VAHNSLFERILFKKT---LGIDIPSKRW 93
            L     + L D+            ++     VAHN+ F+          LG        
Sbjct: 486 KLTNITEKMLEDKPSIEQAFKQINEIIKDAILVAHNANFDFTFLSYWSEKLGYGKLENTI 545

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEHL 122
           I T  ++R          L +    +N S   
Sbjct: 546 IDTLTISRIIYPDLKSHRLGSLAKRVNISYDP 577


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 27/140 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYA---EQAVITL---------------CAYAWDDEPVKLWDR 47
           +D+ET    P+            EQ  +                        +   +   
Sbjct: 8   LDLETTGSNPVLDRITEVAVMRVEQGEVVAKWSRLVNPGQRIPPFIQQLTGIDDAMVAGA 67

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN- 103
                +  +LL  L D  V+ VAHN  F+    K+     G+D+  K   CT  L+R   
Sbjct: 68  PAFGEVLPELLAAL-DGAVL-VAHNVRFDHGFLKQAAAREGVDLRVKTL-CTVRLSRKLY 124

Query: 104 --GLPSSLKNACLALNFSEH 121
                  L            
Sbjct: 125 PQARGHGLDAIMRRHGLHTT 144


>gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 209

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 35/155 (22%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLWDRTEQ 50
            + +D ET S  P    L  +      +          + LCA  + D   V++     Q
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  S--------AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRW----- 93
                         L+ ++       V ++  +++ +     +K LG  +P++       
Sbjct: 90  DLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQI 147

Query: 94  -ICTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
                +           SL   C  L+        
Sbjct: 148 YHD-KLEKHLPNAYFDLSLDAICRHLDLPLQDKHD 181


>gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 209

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + LCA  + D   V++      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRW------I 94
           D  +  +    LLQ +        V ++  +++ +     +K LG  +P++         
Sbjct: 90  DLHDGLSEKEALLQLIEFIGNRPLVGYHIHYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL+  C  L+        
Sbjct: 150 D-KLEKHLPNAYFDLSLEAICRHLDLPLQDKHD 181


>gi|119475072|ref|ZP_01615425.1| DNA polymerase II [marine gamma proteobacterium HTCC2143]
 gi|119451275|gb|EAW32508.1| DNA polymerase II [marine gamma proteobacterium HTCC2143]
          Length = 788

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 1   MSKLFIDIETRSPQ-PLPKVGVWAYAEQAV----ITLCAYAWDDEPVKLWDRTEQSAMPS 55
           +  + +DIET      L  +G++   E+      + + +  W  + V+     ++ ++  
Sbjct: 154 LKTISLDIETAMDNITLYSIGLYG-REKGEDYRLVLMVSDHWIADDVEF--FADEKSLLL 210

Query: 56  DLLQYLR--DETVMCVAHNS-LFERILFKK 82
               +L   D  ++ +  N   F+    ++
Sbjct: 211 RFFDWLSDYDPDII-IGWNIVNFDMWFLER 239


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            L Q   D  +M V HN  F+        ++    DI     I T  L+R          
Sbjct: 484 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 541

Query: 109 LKNACLALNFS 119
           L         S
Sbjct: 542 LDTLAKQYKVS 552


>gi|323186982|gb|EFZ72300.1| ribonuclease D [Escherichia coli RN587/1]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|262342177|gb|ACY54599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 9/137 (6%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 14  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484
               R  GK +   L Y GG       A        +     +            +    
Sbjct: 67  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASRSSASRK--GQEIRGKIMQGLSGFADLNA 124

Query: 485 MQDQYPEFAVKDKLIGT 501
              +  +  V   L G 
Sbjct: 125 AIQERAKSGVLKGLDGR 141


>gi|262212343|gb|ACY35788.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|320544548|ref|NP_001188697.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
 gi|318068312|gb|ADV36947.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
          Length = 11999

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 16/227 (7%)

Query: 141   DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
             ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 11227 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 11286

Query: 201   IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
              + D     +  + + + +L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 11287 FERDQKSHSKHKLEERQMELRAKLEELESQSV-NLRQLEQIYAKLAMSAGVEPENIQKLT 11345

Query: 261   LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L             K ++            + + L +A+  D +L           T   
Sbjct: 11346 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 11390

Query: 321   SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 11391 NAIQKALEQLPSAENQQTSKAEPKAVLQRLESLEKKLQDAQQHVQQA 11437


>gi|320544546|ref|NP_001188696.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
 gi|318068311|gb|ADV36946.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
          Length = 11986

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 16/227 (7%)

Query: 141   DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
             ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 11227 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 11286

Query: 201   IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
              + D     +  + + + +L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 11287 FERDQKSHSKHKLEERQMELRAKLEELESQSV-NLRQLEQIYAKLAMSAGVEPENIQKLT 11345

Query: 261   LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L             K ++            + + L +A+  D +L           T   
Sbjct: 11346 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 11390

Query: 321   SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 11391 NAIQKALEQLPSAENQQTSKAEPKAVLQRLESLEKKLQDAQQHVQQA 11437


>gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 385

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 119/387 (30%), Gaps = 54/387 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +    ++       + L    + D+   +     Q   P   ++ L D
Sbjct: 36  VALDTE-----FVRVRTLY-----PKLGLIQMYFGDQVALIDPLPIQDFSP--FIELLAD 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ + H    +  +F++        +    T V+A   G   S   A L  ++ +   
Sbjct: 84  TNLVKILHACSEDLDVFQRYFQQ--LPRPMCDTQVMAHFLGFAGSTGFATLVQHYFQI-- 139

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---------ELF 174
           ++++G +      +   D+             W L   Y +   + T+         E  
Sbjct: 140 EIDKGASRTDWLARPLSDTQLQ----YAAADVWYLLPLYGQMQQQLTQTEWQSAVENECE 195

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED-IVKLTDGIIR 233
             L   +   +D       I    ++++   +++L+ L     ++  +  +         
Sbjct: 196 FLLNKRAQTTKDPDSAYFAI-PNAWKLNRLELMRLKLLAKWRMEEAMKRDLALNFVVRAE 254

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILKL 292
           +  Q                      TL  + LS + +    K L+              
Sbjct: 255 NLWQVAKSNP------------KHISTLPELGLSTAEVRIHGKKLLQIIDQVKRIVPEDY 302

Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352
               + ++ D R + TL+                P NLP++  + +   +++   +  + 
Sbjct: 303 PPPIQRLADDPRYKATLKALQQHLI------QITPPNLPKELIAGKRHLESLMKWHWLKN 356

Query: 353 IADPLGLASDCVRSCIIASNGKKLVVA 379
             D L       R       G+KL+ A
Sbjct: 357 SEDDLPELLMGWRKPF----GEKLLAA 379


>gi|262342201|gb|ACY54611.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212237|gb|ACY35735.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212241|gb|ACY35737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212279|gb|ACY35756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212285|gb|ACY35759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212291|gb|ACY35762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212295|gb|ACY35764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212313|gb|ACY35773.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212317|gb|ACY35775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212319|gb|ACY35776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212321|gb|ACY35777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212323|gb|ACY35778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212329|gb|ACY35781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212345|gb|ACY35789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212375|gb|ACY35804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212407|gb|ACY35820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342157|gb|ACY54589.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342173|gb|ACY54597.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342175|gb|ACY54598.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342187|gb|ACY54604.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342191|gb|ACY54606.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPSRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG   P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 238

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL------GIDIPSKRWICTSVL 99
           D+        ++ +YL+      + HN+ F+     K L       I       I T V+
Sbjct: 67  DKPRFEHKVDEIWEYLQ--GAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVIDTLVM 124

Query: 100 ARTN--GLPSSLKNACLALNFS 119
           A+    G  +SL + C  L   
Sbjct: 125 AKEMFPGKRNSLDSLCDRLEVD 146


>gi|16080638|ref|NP_391466.1| hydrolase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311540|ref|ZP_03593387.1| hypothetical protein Bsubs1_19396 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315867|ref|ZP_03597672.1| hypothetical protein BsubsN3_19312 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320780|ref|ZP_03602074.1| hypothetical protein BsubsJ_19265 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325066|ref|ZP_03606360.1| hypothetical protein BsubsS_19426 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637751|sp|P96741|YWTE_BACSU RecName: Full=Uncharacterized protein YwtE
 gi|1894770|emb|CAB07471.1| ywtE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636110|emb|CAB15602.1| putative hydrolase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 286

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 66/259 (25%), Gaps = 42/259 (16%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M  + ID++       S            A  A I                         
Sbjct: 1   MKCIAIDLDGTLLNKESVISAENREAIKRAVDAGIL---VTICTGRATF----------- 46

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNAC 113
           D+   L D  +  +A N                       T   +++RT     + K   
Sbjct: 47  DVKALLDDLDIPIIAAN-----------------GGTIHDTGYRLISRTLMDQEAGKAIA 89

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       ++     L++ F   +      D  ++ +                 T+  
Sbjct: 90  DYLLSKNIYFEVYTDDHLLSPFDGEAKLHAELDILKSANPNE----QTDDLWQGAMTQFK 145

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              + P+   E      +       +  D+D + + +E +   +K       K    I+ 
Sbjct: 146 QFGIKPIPHIESVFDGGENIYKLLCFSFDMDKLKQAKEELKHHKKLAQTSSGKHIIEILP 205

Query: 234 SSRQTYALRMYLFLITGID 252
           +S         L  I GI+
Sbjct: 206 ASSGKGRALTKLADIYGIE 224


>gi|330813924|ref|YP_004358163.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487019|gb|AEA81424.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
          Length = 352

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 51/198 (25%), Gaps = 43/198 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
             LFID E     T                   ++  +  +D     L D          
Sbjct: 20  KVLFIDTEFDRRNTYYS---------------ELSFISV-YDGTKFWLIDCLT-DIKVEA 62

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L + L ++ +  V H S  +  +FK    + +P      T   A+  G            
Sbjct: 63  LSKVLNNKKITKVLHGSQQDLEIFKH---LQLPLNSLFDTQTAAQFCGFE---------- 109

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                       K       K   +S              +   EY K DV+  + L+  
Sbjct: 110 --QPISYANAVLKICKVSLDKQLQNSDWLKRPVN------KKTIEYLKNDVKYLKPLYAF 161

Query: 177 LIPLSDGERDLWLLDQTI 194
                   ++     + +
Sbjct: 162 FSKELKKNKNFSYFKEEM 179


>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
 gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
          Length = 247

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 41/157 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVW----AYAEQAVITLC----------------------AY 35
            ++ +D ET     + K+GV        E   + +                       AY
Sbjct: 7   RQIVLDTETTG---MNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPDRLVDPEAY 63

Query: 36  AWDD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSK 91
                    L D+     +  + L ++R      V HN+ F+         +    IP  
Sbjct: 64  GVHGISDEFLADKPTFDQIADEFLDFIR--GGELVIHNAAFDIGFMDHEFRLLQQGIPKT 121

Query: 92  RWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
              CT     ++AR    G  ++L   C         
Sbjct: 122 ETFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSK 158


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            L Q   D  +M V HN  F+        ++    DI     I T  L+R          
Sbjct: 491 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 548

Query: 109 LKNACLALNFS 119
           L         S
Sbjct: 549 LDTLAKQYKVS 559


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            L Q   D  +M V HN  F+        ++    DI     I T  L+R          
Sbjct: 491 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 548

Query: 109 LKNACLALNFS 119
           L         S
Sbjct: 549 LDTLAKQYKVS 559


>gi|262342165|gb|ACY54593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 68

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 69  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 125

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 126 AAIQERAKSGVLKGLDGR 143


>gi|262212265|gb|ACY35749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|320544542|ref|NP_001188694.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
 gi|318068309|gb|ADV36944.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
          Length = 12345

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 16/227 (7%)

Query: 141   DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
             ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 11586 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 11645

Query: 201   IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
              + D     +  + + + +L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 11646 FERDQKSHSKHKLEERQMELRAKLEELESQSV-NLRQLEQIYAKLAMSAGVEPENIQKLT 11704

Query: 261   LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L             K ++            + + L +A+  D +L           T   
Sbjct: 11705 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 11749

Query: 321   SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
             +      + LP  E  +    +    L R E++   L  A   V+  
Sbjct: 11750 NAIQKALEQLPSAENQQTSKAEPKAVLQRLESLEKKLQDAQQHVQQA 11796


>gi|157133258|ref|XP_001656204.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti]
 gi|108870909|gb|EAT35134.1| conserved hypothetical protein [Aedes aegypti]
          Length = 200

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 20/143 (13%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            + L   A       L   T   ++P +L   L ++ ++ V    L + I   +  G+ +
Sbjct: 63  KVALLQLASAGGLCILVQMTRLHSIPQELSDLLHNDRILKVGIGPLADGIKLHQDYGLAL 122

Query: 89  PSKRWICTS---VLARTNG--LPSSLKNACL-ALNFSEHLTKMEEG---------KALIA 133
                  T     LA+     +P  +K      L F     K             K  I 
Sbjct: 123 RG-----TMDLQTLAQRLDVPVPYGMKALAKSVLGFEMDKKKNVILSNWERPLLTKRQID 177

Query: 134 RFCKGSIDSPPYDCTRANHVQAW 156
              K +I            +Q W
Sbjct: 178 YASKDAIVGLEIFRAFNQRIQLW 200


>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
 gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
          Length = 245

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 42/156 (26%)

Query: 2   SKLFIDIETRSPQP------------------LPKVGVWAYA--------EQAVITLCAY 35
            ++ +D ET    P                  +    +  Y         E A +     
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 36  AWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDI 88
              +         +    +   +           + HN+ F+        + +G   I+ 
Sbjct: 64  EVLEAK-NAPPFAQVGKQIADFIR------GAELIIHNAKFDVGFLNMEFRRMGLPSIEE 116

Query: 89  PSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
              +   T  +AR    G  +SL   C   +     
Sbjct: 117 LGCKVTDTLAMAREMFPGQKASLDALCNRFSVDRSK 152


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA 100
           + D  +   +    +++  D   + VAHN+ F+     K     GI+      I T  LA
Sbjct: 534 VIDAPKIETILPQFMEFCGDA--IMVAHNADFDMSFIIKNCERQGIE-KEFTIIDTVALA 590

Query: 101 RTNGLPSS---LKNACLALNFS 119
           R      +   L     AL  S
Sbjct: 591 RILLPQLNRFKLDTVAKALGVS 612


>gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
          Length = 304

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 21/239 (8%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D E + L D   + ++     + L+D +V+ V H+   +  +F+K  G  
Sbjct: 8   PEVALIQV-FDGEHLALIDPLAELSLFD-FWEILKDPSVLKVLHSPSEDIEVFQKYAGFV 65

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T    +  G  + +  A         + K  +G   I      S  +     
Sbjct: 66  --PSPLFDTQFALQLLGEGNCMGFA--------LMVKELQG---IEIDKSESRTNWLQRP 112

Query: 148 --TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205
              +     A   F      ++   R        +   E +L    +         D  L
Sbjct: 113 LTKKQLDYAAADTFYLLPCFELIIERINAAGFFDIVINESELIAKKRAFQTP----DELL 168

Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264
              ++     +  +L            ++ ++  AL   L      ++      +L ++
Sbjct: 169 YKDIKNAWQLKPHELAVLKELAVWRRNKAIKKNLALNFVLKEHNMTEIAKRGPSSLNAL 227


>gi|262342181|gb|ACY54601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|229472309|gb|ACQ72669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGRIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|71908088|ref|YP_285675.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
 gi|71847709|gb|AAZ47205.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
          Length = 217

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 49/182 (26%), Gaps = 28/182 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           +  D E  S     K  V          L   A D E V L      +     L + L  
Sbjct: 49  IGFDTE--SKPTFLKGEVSTGPH-----LVQLATD-EHVFLLPVAFAAN-HEVLRRILSA 99

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ V      +R + +  LGI++ +              L  +++             
Sbjct: 100 ADILKVGLGLGNDRSVLRSRLGIELNN-----------VLDLGEAMRGPGHR---GTVGA 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSD 182
           K+         F +    S     +   + +  +    Y   D     +L+   L     
Sbjct: 146 KVAVAH----YFGQKFQKSKKVGTSNWANPRLNERQLLYAANDAHVALQLYHAWLRDPKH 201

Query: 183 GE 184
            E
Sbjct: 202 RE 203


>gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75
           L K     +     I             + D  +   +   +  + +    + +AHN+ F
Sbjct: 42  LIKPESDFFWRNVQIHGI------HEADVADAPKFPDVWQHIAPFFQ-RDRLVIAHNAPF 94

Query: 76  ERILFKK---TLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSEHL 122
           +  + +      GI  P    + T   +           L   C AL+     
Sbjct: 95  DIGVLRNTLAHYGISAPEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQH 147


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 22/137 (16%)

Query: 2   SKLFIDIETRSPQ---PLPKVGVWAYAEQAVIT--LCAYAWDDEP------VKLWDRTEQ 50
           + + +D ET               A  EQ  I      +  +           L D  ++
Sbjct: 46  NIVVVDTETTGFSFNHDELTQIAAARMEQGRIVDWFITF-VNPGKPIPEDVAYLTDIHDE 104

Query: 51  S----AMPSDLLQYLRD--ETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTN 103
                 +PS+ L  L +       VAHN+ F+R    +   G  +    WI +  LAR  
Sbjct: 105 DVADAPLPSEALSELAEFVGDAKIVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIA 164

Query: 104 GL---PSSLKNACLALN 117
                   L +   A  
Sbjct: 165 LPRLKSHRLLDLVKAFG 181


>gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354]
 gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
 gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401]
 gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401]
 gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|253773243|ref|YP_003036074.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297516497|ref|ZP_06934883.1| ribonuclease D [Escherichia coli OP50]
 gi|300927881|ref|ZP_07143442.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|312969840|ref|ZP_07784023.1| ribonuclease D [Escherichia coli 1827-70]
 gi|253324287|gb|ACT28889.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|300464070|gb|EFK27563.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|310338125|gb|EFQ03214.1| ribonuclease D [Escherichia coli 1827-70]
 gi|323961858|gb|EGB57457.1| ribonuclease D [Escherichia coli H489]
 gi|323972689|gb|EGB67892.1| ribonuclease D [Escherichia coli TA007]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933]
 gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           EDL933]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 25/138 (18%)

Query: 1   MSKLFIDIET-RSPQPLPKVGVWAYAEQAVIT-----LCAYAWDD-----------EPVK 43
           M  + ID ET  + +  P      + +   I      L    +D+            P  
Sbjct: 1   MEFVTIDFETATAQRDSPCEIGLTFVQDGQIIDTKSWLIKPMYDEFDYFNILIHGIRPEH 60

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
           + D+ E + + S++   + ++    +AHN+ F+  + ++      +  P+  + C+ + +
Sbjct: 61  VADKPEFNELWSEIKPLVENK--FLIAHNAGFDISVLRRTLEAYQLPFPTLNYSCSYIFS 118

Query: 101 R--TNGLP-SSLKNACLA 115
           +    GLP   LK  C  
Sbjct: 119 KKVWQGLPAYDLKTLCKV 136


>gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
 gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
          Length = 300

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 29/137 (21%)

Query: 4   LFIDIETR----SPQPLPKVGVWAYAEQAVIT----LCAYAWDDEPVKLWDRTEQSAMPS 55
           + ID ET     S   + ++G   +     I     + AY             E + +  
Sbjct: 36  IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAY---PGTPIPVRIQELTGITD 92

Query: 56  DL-----------LQYL--RDETVMCVAHNSLFERILFKKTL--GIDIPSKRWICTSVLA 100
           ++            ++L   D     +AHN+ FE    +       ++P+  +I T  ++
Sbjct: 93  EMVTGCEPPLFVWKKFLDWADGANTFIAHNAPFEARFVRALYEKEGEMPNIYFIDTLQIS 152

Query: 101 R-TN--GLPSSLKNACL 114
           R         SLKN   
Sbjct: 153 RNRLPEESSYSLKNLVK 169


>gi|291486152|dbj|BAI87227.1| hypothetical protein BSNT_05466 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 286

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 66/259 (25%), Gaps = 42/259 (16%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M  + ID++       S            A  A I                         
Sbjct: 1   MKCIAIDLDGTLLNKESVISAENREAIKRAVDAGIL---VTICTGRATF----------- 46

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNAC 113
           D+   L D  +  +A N                       T   +++RT     + K   
Sbjct: 47  DVKALLDDLDIPIIAAN-----------------GGTIHDTGYRLISRTLMDQEAGKAIA 89

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       ++     L++ F   +      D  ++ +                 T+  
Sbjct: 90  DYLLSKNIYFEVYTDDHLLSPFDGKAKLHAELDILKSANPNE----QTDELWQGAMTQFK 145

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              + P+   E      +       +  D+D + + +E +   +K       K    I+ 
Sbjct: 146 QFGIKPIPHIESVFEGGENIYKLLCFSFDMDKLKQAKEELKHHKKLAQTSSGKHIIEILP 205

Query: 234 SSRQTYALRMYLFLITGID 252
           +S         L  I GI+
Sbjct: 206 ASSGKGRALTKLADIYGIE 224


>gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
 gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
          Length = 476

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 37/198 (18%)

Query: 6   IDI-ETRSP-QPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQY 60
           ID  E       L + G    A  A   +   Y+ +D  ++   +     +    +L + 
Sbjct: 19  IDTLEAYKDYCSLLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKL 78

Query: 61  LRD--------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN 111
             D          V  + H+S+ +   F     I +       T + A+  G     L +
Sbjct: 79  GADWNEFNKAVGDVPWIIHDSMQDLPGF---FNIGLRPLALFDTEIAAKLLGRKRFGLSS 135

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                                      + +    D +     + W     Y   DVE   
Sbjct: 136 VTEYY-----------------LGLTLAKEHSAADWSYRPLPRDW---RNYAALDVELLI 175

Query: 172 ELFKRLIPLSDGERDLWL 189
           EL + +      +  L  
Sbjct: 176 ELEEVMRVELKKQGKLSW 193


>gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627]
 gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|117623964|ref|YP_852877.1| ribonuclease D [Escherichia coli APEC O1]
 gi|227885769|ref|ZP_04003574.1| ribonuclease D [Escherichia coli 83972]
 gi|237705754|ref|ZP_04536235.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|300994259|ref|ZP_07180813.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|301050852|ref|ZP_07197705.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|306814949|ref|ZP_07449105.1| ribonuclease D [Escherichia coli NC101]
 gi|312967002|ref|ZP_07781220.1| ribonuclease D [Escherichia coli 2362-75]
 gi|331657844|ref|ZP_08358806.1| ribonuclease D [Escherichia coli TA206]
 gi|115513088|gb|ABJ01163.1| Ribonuclease D [Escherichia coli APEC O1]
 gi|222033551|emb|CAP76292.1| ribonuclease D [Escherichia coli LF82]
 gi|226900511|gb|EEH86770.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|227837342|gb|EEJ47808.1| ribonuclease D [Escherichia coli 83972]
 gi|300297490|gb|EFJ53875.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|300406325|gb|EFJ89863.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|305851597|gb|EFM52050.1| ribonuclease D [Escherichia coli NC101]
 gi|307553822|gb|ADN46597.1| ribonuclease D [Escherichia coli ABU 83972]
 gi|307626717|gb|ADN71021.1| ribonuclease D [Escherichia coli UM146]
 gi|312288466|gb|EFR16368.1| ribonuclease D [Escherichia coli 2362-75]
 gi|312946400|gb|ADR27227.1| ribonuclease D [Escherichia coli O83:H1 str. NRG 857C]
 gi|315286519|gb|EFU45954.1| ribonuclease D [Escherichia coli MS 110-3]
 gi|315290392|gb|EFU49767.1| ribonuclease D [Escherichia coli MS 153-1]
 gi|315299924|gb|EFU59162.1| ribonuclease D [Escherichia coli MS 16-3]
 gi|323952305|gb|EGB48178.1| ribonuclease D [Escherichia coli H252]
 gi|323956433|gb|EGB52175.1| ribonuclease D [Escherichia coli H263]
 gi|323978014|gb|EGB73100.1| ribonuclease D [Escherichia coli TW10509]
 gi|324007181|gb|EGB76400.1| ribonuclease D [Escherichia coli MS 57-2]
 gi|331056092|gb|EGI28101.1| ribonuclease D [Escherichia coli TA206]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           QM B1551]
 gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium QM B1551]
          Length = 933

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL-- 105
             +   +++ L D     VAHN  F+    +      G +      + T  LAR      
Sbjct: 72  EEISPKIIELLDDA--YFVAHNVAFDLTFLQEELYQCGEETLYNSTVDTVELARILLPTV 129

Query: 106 -PSSLKNACLALNFSEHL 122
               L      L+     
Sbjct: 130 DGYKLSQLAEYLHIEHEN 147


>gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 23/137 (16%)

Query: 6   IDIETRS--PQPLPKVGVWAY-AEQAVITLCAYAW-------DDEPVKLWDRTE----QS 51
           ID ET          + V A   +   I     ++         E ++  + T+      
Sbjct: 48  IDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEMVADK 107

Query: 52  AMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVL-ARTN-- 103
               ++L    +  +  + V H+  F+  +  K +        +  W+ T ++ +     
Sbjct: 108 PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYSHAIIK 167

Query: 104 -GLPSSLKNACLALNFS 119
                SL       N +
Sbjct: 168 KDERYSLDYLLDLYNVT 184


>gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110]
 gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952]
 gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D
 gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
           Exoribonuclease Involved In Structured Rna Processing
 gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli]
 gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110]
 gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952]
 gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407]
 gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1]
 gi|226093|prf||1410308A ribonuclease D
          Length = 375

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai]
 gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A]
 gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A]
 gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22]
 gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019]
 gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171]
 gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11]
 gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1]
 gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989]
 gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026]
 gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088]
 gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A]
 gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A]
 gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22]
 gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019]
 gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171]
 gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli]
 gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli]
 gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli]
 gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli]
 gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli]
 gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11]
 gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989]
 gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1]
 gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026]
 gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088]
 gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 30/142 (21%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDL 57
            +  DIET         + ++G     +   I    +   +      +  TE +++  + 
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVK-IKSGRIMDRYSQLINPGRPIPYHITEITSITDE- 479

Query: 58  LQYLRDETVMCV--------------AHNSLFERILFKK----TLGIDIPSKRWICTSVL 99
            Q   +  +  V              AHN+ F+    K+     L ID      I T  +
Sbjct: 480 -QVANEPKIDKVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQM 537

Query: 100 ARTNGL---PSSLKNACLALNF 118
           AR          L +    L  
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGL 559


>gi|320181157|gb|EFW56076.1| Ribonuclease D [Shigella boydii ATCC 9905]
 gi|332089922|gb|EGI95022.1| ribonuclease D [Shigella boydii 5216-82]
 gi|332093315|gb|EGI98374.1| ribonuclease D [Shigella dysenteriae 155-74]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KSILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|307176637|gb|EFN66105.1| Probable exonuclease mut-7-like protein [Camponotus floridanus]
          Length = 1053

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 51/183 (27%), Gaps = 18/183 (9%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERIL 79
            +Q  + L   A +D  V + D T       +L     L    ++ ++ +      +  +
Sbjct: 415 TKQPELALIQIATEDN-VYILDVTTLGNELPELWVELGLTLFGNKNIVKIGFGIAHDITV 473

Query: 80  FKKTLG----IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL-TKMEEGKALIAR 134
            + ++     I    + ++   +L R      +         +        +    L+  
Sbjct: 474 IRNSIPALSSIKNHGQGYLDLMILWRKLTEDYNF-----IFPYKGDPNFTSKSLSKLVEL 528

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQT 193
                +D               +    Y   D     E++K L   S D +     +   
Sbjct: 529 CFGQRLDKSDQFSNWELRP-LRESQIIYAALDAYCLLEIYKVLADYSADMDIPFEDICAE 587

Query: 194 IND 196
           I  
Sbjct: 588 IQH 590


>gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1]
 gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 246

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRW 93
              L D+ +   +  + L ++  +    VAHN+ F+               G      + 
Sbjct: 75  DAFLVDKPQYKEVHQEFLDFI--KGAELVAHNASFDVGFMDYEFAKVNPAIGKTEQYCKI 132

Query: 94  ICTSVLARTN--GLPSSLKNACLALNFS 119
             T  +A+    G  ++L   C      
Sbjct: 133 TDTLAMAKKIFPGKRNNLDILCDRYGID 160


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 56  DLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL---PSS 108
            L Q   D  +M V HN  F+        ++    DI     I T  L+R          
Sbjct: 491 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 548

Query: 109 LKNACLALNFS 119
           L         S
Sbjct: 549 LDTLAKQYKVS 559


>gi|70729848|ref|YP_259587.1| DNA polymerase II [Pseudomonas fluorescens Pf-5]
 gi|68344147|gb|AAY91753.1| DNA polymerase II [Pseudomonas fluorescens Pf-5]
          Length = 786

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 18/94 (19%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSA 52
           +  + +DIET          L   G      Q  + +   A DD+    +D      +  
Sbjct: 152 LKLVSLDIETSERGELYSIALEGCG------QRQVYMLGKARDDDSAVDFDLEFCASREQ 205

Query: 53  MPSDLLQYLR--DETVMCVAHNS-LFERILFKKT 83
           +   L Q+L   D   + +  N   F+  +  + 
Sbjct: 206 LLERLNQWLAEHDPDAI-IGWNLVQFDLRVLHEH 238


>gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
          Length = 827

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 13/105 (12%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119
             D  ++ V H S  +    ++  GI +       T        +P  SLK         
Sbjct: 321 FVDPNIVKVMHGSSQDIQWLQRDFGIYV--VNLFDTYHAMEVLEMPQRSLKFL------- 371

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               K   G  L   +        P       + ++   +  YC 
Sbjct: 372 ---VKELVGVNLDKSYQTADWRIRPLGSKMLAYARSDSHYLLYCW 413


>gi|229472297|gb|ACQ72663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +             +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDSGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 225

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 31/147 (21%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITL-----------------CAYAWDDEPVK 43
           M ++ +D ET               E A I L                    +       
Sbjct: 1   MLEIILDTETTGL----SFNTDKIIEIACIELENQIPTKNKFHVFINPNMDISDGAYQTH 56

Query: 44  LW--DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG-IDIPS---KRWIC 95
               D      +  D+ +   +  +    V HN+ F+     K L  +D+      R + 
Sbjct: 57  GISRDFLRDKPVFKDIAKEFLNFIKDSKLVIHNADFDLAFLNKELQELDLEPLSKDRVVD 116

Query: 96  TSVLAR--TNGLPSSLKNACLALNFSE 120
           T  LAR    G  +SL   C     + 
Sbjct: 117 TLFLARQKFPGSQASLDALCKRFKINT 143


>gi|262212203|gb|ACY35718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 14  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 66

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 67  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 123

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 124 AAIQERAKSGVLKGLDGR 141


>gi|157133254|ref|XP_001656202.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti]
 gi|157133256|ref|XP_001656203.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti]
 gi|108870907|gb|EAT35132.1| conserved hypothetical protein [Aedes aegypti]
 gi|108870908|gb|EAT35133.1| conserved hypothetical protein [Aedes aegypti]
          Length = 257

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 15/150 (10%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88
            + L   A       L   T   ++P +L   L ++ ++ V    L + I   +  G+ +
Sbjct: 63  KVALLQLASAGGLCILVQMTRLHSIPQELSDLLHNDRILKVGIGPLADGIKLHQDYGLAL 122

Query: 89  PSKRWICTS---VLARTNG--LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDS 142
                  T     LA+     +P  +K      L F     K          + +  +  
Sbjct: 123 RG-----TMDLQTLAQRLDVPVPYGMKALAKSVLGFEMDKKKNVILSN----WERPLLTK 173

Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
              D    + +   ++F  + +R      E
Sbjct: 174 RQIDYASKDAIVGLEIFRAFNQRIQLCEME 203


>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10]
 gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           32953]
 gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
 gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
 gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
 gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           31758]
 gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
 gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           YPIII]
 gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
 gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10]
 gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
 gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
 gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
 gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
 gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
 gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
 gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 254

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 39/160 (24%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVH-YEGH-RIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 60

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD---------ETVMCVAHNSLFERILFKKTLGI---DI 88
                       +         D              V HN+ F+         +   DI
Sbjct: 61  EAYGVHGISDEFLAD--KPTFADITPEFLDFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 118

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     ++AR    G  ++L   C         
Sbjct: 119 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTK 158


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 33/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----------------VKLWDRT---- 48
           ET     +   G+ A     +I L A                         + + T    
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL 99
               +   +   +  +       + VAHN+ F+        KK L +D      I T  L
Sbjct: 478 DMLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537

Query: 100 ARTNGL---PSSLKNACLALNFS 119
            R          L   C   +  
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96]
 gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96]
          Length = 389

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L +D E      L +   +         L   A  +    +      S     L + +  
Sbjct: 27  LALDTE-----FLREKTYY-----PKFCLLQIATPEWVACIDPIALPS--LDILFEAIYS 74

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
            +++ V H+   +  +F +  G     +    T + A   G 
Sbjct: 75  PSIVKVFHSCRQDLEIFYQLTGK--LPEPLFDTQIAAPLLGF 114


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 37/143 (25%), Gaps = 33/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----------------VKLWDRT---- 48
           ET     +   G+ A     +I L A                         + + T    
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL 99
               +   +   +  +       + VAHN+ F+        KK L ++      I T  L
Sbjct: 478 DMLRDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 100 ARTNGL---PSSLKNACLALNFS 119
            R          L   C   +  
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 33/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----------------VKLWDRT---- 48
           ET     +   G+ A     +I L A                         + + T    
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL 99
               +   +   +  +       + VAHN+ F+        KK L +D      I T  L
Sbjct: 478 DMLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537

Query: 100 ARTNGL---PSSLKNACLALNFS 119
            R          L   C   +  
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 215

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 29/151 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYA-----------EQAVITLCA-YAWDDEPVKLW-----D 46
           + +D ET S  P     V   A           +   I L A  + D   V++      D
Sbjct: 31  ISLDCETTSLDPQRAELVSIAATKIIDNRILTSQAFHIRLAAPPSLDSGSVRIHQLRHQD 90

Query: 47  RTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLAR 101
                + P  L Q L        V ++  +++ +     +K LG  +P+     + +  +
Sbjct: 91  LAYGLSEPQALQQLLAFIGNRPLVGYHIRYDKTILDIACRKQLGFPLPNPLIEVSQLYHQ 150

Query: 102 TNG-------LPSSLKNACLALNFSEHLTKM 125
                        SL   C  L+        
Sbjct: 151 QLEKQLPNAYFDLSLAAICHHLDLPMQDKHD 181


>gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
 gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
          Length = 209

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 35/155 (22%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLWDRTEQ 50
            + +D ET S  P    L  +      +          + LCA  + D   V++     Q
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  S--------AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRW----- 93
                         L+ ++       V ++  +++ +     +K LG  +P++       
Sbjct: 90  DLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQI 147

Query: 94  -ICTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
                +           SL   C  L+        
Sbjct: 148 YHD-KLEKHLPNAYFDLSLDAICRHLDLPLQDKHD 181


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
          Length = 1517

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDEPVK--------------L 44
            +  DIET     +    +   A       I    +   + +                 +
Sbjct: 481 YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDRFSTFVNPQRPIPFEITNLTSITDEMV 540

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            +      +    L+++ D   + VAHN+ F+    +   +   I+     ++ T  +AR
Sbjct: 541 LEADPIENVLPQFLEFVGDG--VLVAHNASFDVGFIEQNCRYQEIEYR-FTYVDTVAMAR 597

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L      L  S
Sbjct: 598 VLLPTLSKYKLNLVAKTLGIS 618


>gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS]
 gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638]
 gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1]
 gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS]
 gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638]
 gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1]
 gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)]
 gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197]
 gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863]
 gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 28/112 (25%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           + +D E     T                   + L    +D E + L D      +     
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID---PLVITDWSP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           L   LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 62  LKAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|262342163|gb|ACY54592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 68

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 69  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 125

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 126 AAIQERAKSGVLKGLDGR 143


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 27/121 (22%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVITL-CAYAWDDE---PVKLWDRT-------EQ 50
           +D+ET    P    + ++G         +    A   D E   P ++   T         
Sbjct: 41  VDLETTGSDPAGDRITEIGAVKIRG-GEVLGEFATLVDPERSIPPQIVTLTGITHAMVSA 99

Query: 51  SAMPSDLLQYL---RDETVMCVAHNSLFERILFKK-----TLGIDIPSKRWICTSVLART 102
           +    ++L         +++ VAHN+ F+    ++      L    P    +CT  +AR 
Sbjct: 100 APRIEEVLPAFIEFARGSIL-VAHNARFDMGFLRRNAQRLHLDFPFPLS--LCTVTMARR 156

Query: 103 N 103
            
Sbjct: 157 I 157


>gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073]
 gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89]
 gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88]
 gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a]
 gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073]
 gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89]
 gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88]
 gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a]
 gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  DIET         + ++G        ++   +   +      +  TE         
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 481

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLART 102
                  +++    D     + VAHN+ F+    K+     L ID      I T  +AR 
Sbjct: 482 ANEPKIDEVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARD 540

Query: 103 NGL---PSSLKNACLALNF 118
                    L +    L  
Sbjct: 541 LFPDLKKYGLGDLNKTLGL 559


>gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146]
 gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 243

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQP---------LPKVGVWAYA---------------------EQAVIT 31
            ++ +D ET              + ++G                          E   + 
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFTVH 66

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDI 88
             +   DD    L D+   + +  + L ++R      V HN+ F+           G D+
Sbjct: 67  GIS---DD---FLLDKPSFAEVADEFLAFIR--GAELVIHNAPFDIGFMDYEFAKLGRDL 118

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     V+AR    G  +SL   C         
Sbjct: 119 PKTETFCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSK 158


>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
 gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
          Length = 245

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 42/156 (26%)

Query: 2   SKLFIDIETRSPQP------------------LPKVGVWAYA--------EQAVITLCAY 35
            ++ +D ET    P                  +    +  Y         E A +     
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 36  AWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDI 88
              +         +    +   +           + HN+ F+        + +G   I+ 
Sbjct: 64  EVLEAK-NAPPFAQVGKQIADFIR------GAELIIHNAKFDVGFLNMEFRRMGLPSIEE 116

Query: 89  PSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
              +   T  +AR    G  +SL   C   +     
Sbjct: 117 LGCKVTDTLAMAREMFPGQKASLDALCNRFSVDRSK 152


>gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40]
 gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40]
          Length = 386

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 52/192 (27%), Gaps = 38/192 (19%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDRTEQSAMPSDLLQY 60
             L +D E      +     +  A      L     +D     L D T      S   + 
Sbjct: 30  KLLAVDTE-----FMRSQTYYPIAG-----LIQ--VNDGEANYLLDPTTIDDF-SPFAEI 76

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
           L D+ ++   H+   +  +F  + G     +R   T +      L  S+           
Sbjct: 77  LVDDDIIKAIHSCSEDLEVFYHSFGF--LPQRLFDTQIAGAFVNLGYSM----------- 123

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEATRELFKRLI 178
                                  P   TR++ +Q         Y   DVE    L  +L+
Sbjct: 124 ---------GFARMVQGVLGVELPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLL 174

Query: 179 PLSDGERDLWLL 190
                +  L  +
Sbjct: 175 TELKAKERLDWV 186


>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D          L     D+ ++ V H +  +    ++  GI I       T   ART
Sbjct: 294 YIVDVFSVWKSLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYI--VNLFDTGQAART 351

Query: 103 NGLP 106
             +P
Sbjct: 352 LSMP 355


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
          Length = 383

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 46/178 (25%), Gaps = 44/178 (24%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           + +D E     T                   + L    +D E V L D    T+ S    
Sbjct: 33  VALDTEFMRVSTYY---------------PKLGLIQL-YDGERVSLIDPLSITDFSPFVE 76

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL- 114
            L   L    V  + H    + ++F +    D   +  + T ++AR  G  ++       
Sbjct: 77  LLRDQL----VTKILHACNEDLLVFLQEF--DALPQPMMDTQIMARFLGF-ANSAGLAKL 129

Query: 115 ---ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L           G        +                  W L   Y K  +E 
Sbjct: 130 VLHYLGIEMDK-----GATRTNWLKRPLSPVQLQ----YAAGDVWYLLPVYQKMQIEL 178


>gi|153001896|ref|YP_001367577.1| 3'-5' exonuclease [Shewanella baltica OS185]
 gi|151366514|gb|ABS09514.1| 3'-5' exonuclease [Shewanella baltica OS185]
          Length = 315

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D ETR+             +   ++L   A  D    L+         + L   L D
Sbjct: 133 LGFDTETRASF-------ERGVQHP-LSLIQIATAD-ACYLFQHAILGEQFTQLKTVLED 183

Query: 64  ETVMCVAHNSLFERILFKKTLGIDI 88
           E ++ V      +    K+  GI++
Sbjct: 184 ENILKVGVGLRSDAQALKRQWGINV 208


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 37/143 (25%), Gaps = 33/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----------------VKLWDRT---- 48
           ET     +   G+ A     +I L A                         + + T    
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL 99
               +   +   +  +       + VAHN+ F+        KK L ++      I T  L
Sbjct: 478 DMLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 100 ARTNGL---PSSLKNACLALNFS 119
            R          L   C   +  
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 13/128 (10%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    K       I    K+ + T  L   A        L     + N
Sbjct: 83  KDCIFVAHNISFDLNFIKNAFDNCNIQFRPKKVMDTLELFKIAFPTDKSYQLSELAQSHN 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                                +           N     Q    Y  +D     +L+  L
Sbjct: 143 IPLTNA-----HRADEDATTTAKLMIKAFEKFENLPLDTQKQLYYLSKD--LKYDLYNIL 195

Query: 178 IPLSDGER 185
             +    +
Sbjct: 196 FEMVRNNQ 203


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117
           +  + VAHN+ F+R   +      G+       +CT  L+R          L        
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGVAFNPD-VLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 FSE 120
            + 
Sbjct: 150 LAP 152


>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
 gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
          Length = 239

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 43/160 (26%), Gaps = 50/160 (31%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA----WD---DEPVKLWDRTEQSAMP 54
            ++ +D ET             YAE     L  +A     +              Q  MP
Sbjct: 3   RQIILDTETTGL----------YAENGD-RLVEFAGLEMVNRQMTGRFLHLYVHPQRDMP 51

Query: 55  SDL-------LQYLRDETVM---CVA--------------HNSLFERILFK---KTLG-- 85
            +        +  L ++       V               HN+ F+        + +G  
Sbjct: 52  EEAARVHGLTIDVLEEKNAPPFAKVGQEISEFIRGAELIIHNAKFDVGFLNMEFRRMGLP 111

Query: 86  -IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
            ++        T  +AR    G  +SL   C  L+     
Sbjct: 112 SVEELGCEITDTLAMAREMFPGQKASLDALCNRLSIDRSK 151


>gi|194856562|ref|XP_001968777.1| GG25057 [Drosophila erecta]
 gi|190660644|gb|EDV57836.1| GG25057 [Drosophila erecta]
          Length = 3969

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 16/227 (7%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N  Q W+               ++  L  L     +          +   
Sbjct: 3210 NTSGLAASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAG 3269

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     +  + + +++L   + +L    + + RQ   +   L +  G++  ++ + T
Sbjct: 3270 FERDQKSHSKPKLEERQQELRAKLEELESQSV-NLRQLEQIYAKLTMSAGVEPENIQKLT 3328

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K ++            + + L +A+  D +L           T   
Sbjct: 3329 L-----------PTKVMVSMWRQL----TPRCHALLDAIDKDAKLMREFNNAQLEATNSL 3373

Query: 321  SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367
            +      + LP  E  +    Q    L R E++   L  A   V+  
Sbjct: 3374 NAIQKALEQLPSVEDQQTSKAQPKAVLQRLESLEKKLQDAQQHVQQA 3420


>gi|170094937|ref|XP_001878689.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645993|gb|EDR10239.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 532

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 70/251 (27%), Gaps = 28/251 (11%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E          G     E+  + +         V +         P +L   + +
Sbjct: 233 VSLDLE-WCFYFTKNKGTTTLNER-RVAVVQVTDVCGMVLIIQIFGMRRFPKNLQSLIEN 290

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFS 119
             V  +  N L +     +  GI            LA++     +L      A       
Sbjct: 291 PNVPKMGVNILNDGKKLFRDYGI------------LAQSLVELGALAMVADPAAKRRRKM 338

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
             L K+ E         K               +   Q   +Y   D  +T +++  L+ 
Sbjct: 339 VSLAKLVE-----QYCGKLLEKGSIRTGNWEAKLD--QEQIDYAANDAHSTIQVYNELVK 391

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD--EDIVKLTDGIIRSSRQ 237
           ++D        D+  + +        +L  +  +    K L   + +        ++   
Sbjct: 392 MADEMSINLWDDKQTHTQAVGWHRSTLLASRSKLEVSSKILARPQQLRAYQYWHHQNM-S 450

Query: 238 TYALRMYLFLI 248
              + M L L 
Sbjct: 451 LEKMCMALSLK 461


>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
          Length = 242

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 30/147 (20%)

Query: 1   MSKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDDEP 41
           M ++ +D ET                       L    +  Y   +  I   A A     
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIP-----SKRWI 94
            +   D+ + + + +++  Y++      + HN+ F+          + +P         I
Sbjct: 61  NEFVADKPKFAEIVNEIRDYVQ--GAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGHI 118

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T   AR    G  +SL   C  L  S
Sbjct: 119 DTLREARQMFPGKRNSLDALCDRLGVS 145


>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
          Length = 304

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 4   LFIDIETRSPQPLPKVGVWA------YAEQAVITLC--AYAWDDEPVKLWD--------- 46
           +FID+ET    P+    V        Y++   I     ++A   +P +            
Sbjct: 48  VFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDPGRPIPPEVSAMTGI 107

Query: 47  ----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83
                   +  P+++  +L D   + VAHN  F+R   ++ 
Sbjct: 108 TDAMVAGAAIEPAEIEAFLGDTAALVVAHNCSFDRRFAERF 148


>gi|262342179|gb|ACY54600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +      L G 
Sbjct: 123 AAIQERAKSGALKGLDGR 140


>gi|262212261|gb|ACY35747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G  +         +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKLAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|259149807|emb|CAY86611.1| Mip1p [Saccharomyces cerevisiae EC1118]
          Length = 1280

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/292 (9%), Positives = 67/292 (22%), Gaps = 63/292 (21%)

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               +++ + A  G   V AD+   E  + +             +  +++  T       
Sbjct: 699 IGSELKTQVKAPPGYCFVGADVDSEELWIAS---------LVGDSIFNVHGGTAIGWMCL 749

Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479
              K             L                  G   +  SQ +K  +     E+ +
Sbjct: 750 EGTKNEGTDLHTKTAQILGCS--RNEAKIFNYGRIYGAGTKFASQLLKRFNPSLTDEETK 807

Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539
                + +       + KL                    + W                  
Sbjct: 808 KIANKLYENTKGKTKRSKLF------------------KKFWY----------------- 832

Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599
                    ++  + +       P             C    +   + +R  ++      
Sbjct: 833 ----GGSESILFNKLESIAEQETP-------KTPVLGCGITYSLMKKNLRANSFLPSRIN 881

Query: 600 NIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645
             +Q+   D   +LC  M            + +++HDEI     +   +   
Sbjct: 882 WAIQSSGVDYLHLLCCSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAA 933


>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 239

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 37/151 (24%), Gaps = 38/151 (25%)

Query: 1   MSKLFIDIETRSPQ------------------PLPKVGVWAYAEQAVITLCAYAWDDEPV 42
           M ++ +D ET                       L       Y             D E V
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINPGR------GIDAEAV 54

Query: 43  KLWDRTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL------GIDIPS 90
            +   TE         +D++    D       V HN+ F+       L       +    
Sbjct: 55  AVHGITEEFLADKPKFADIVADFEDFVRDAELVIHNASFDVGFLDAELERLGRAKLGALC 114

Query: 91  KRWICTSVLARTNGLP--SSLKNACLALNFS 119
              + T  LA+       +SL   C      
Sbjct: 115 AGVVDTLKLAKEQNPGKKASLDALCDRYEID 145


>gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012]
 gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012]
          Length = 375

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KSILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 28/141 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +  DIET         + ++G        ++   +   +      +  TE +++  +  
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDE-- 479

Query: 59  QYLRDETVMCV--------------AHNSLFERILFKK----TLGIDIPSKRWICTSVLA 100
           Q   +  +  V              AHN+ F+    K+     L ID      I T  +A
Sbjct: 480 QVANEPKIDKVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMA 538

Query: 101 RTNGL---PSSLKNACLALNF 118
           R          L +    L  
Sbjct: 539 RDLFPDLKKYGLGDLNKTLGL 559


>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
 gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
          Length = 828

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +   + + + D   + VAHN  F+  L  + L   G ++ + R   T  LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPY 145
              L +    LN          +       +       I S P 
Sbjct: 132 QYKLSHLSKVLNLDLAQAHTAIEDARATGQLLFHLMDKITSLPR 175


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 28/141 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +  DIET         + ++G        ++   +   +      +  TE +++  +  
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDE-- 479

Query: 59  QYLRDETVMCV--------------AHNSLFERILFKK----TLGIDIPSKRWICTSVLA 100
           Q   +  +  V              AHN+ F+    K+     L ID      I T  +A
Sbjct: 480 QVANEPKIDKVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMA 538

Query: 101 RTNGL---PSSLKNACLALNF 118
           R          L +    L  
Sbjct: 539 RDLFPDLKKYGLGDLNKTLGL 559


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 7/56 (12%)

Query: 69  VAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNF 118
           +AHN+ F+R   +      G        +CT  L+R          L         
Sbjct: 100 IAHNASFDRGFLRAEFERAGYAFNPD-VLCTVRLSRALFPRESRHGLDALIERHAL 154


>gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1]
 gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1]
          Length = 371

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 39/124 (31%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWD--RTEQSAMPSDL 57
               +DIET               +   I     A       ++ +D      + +P+ +
Sbjct: 4   KYAVVDIETTGNN----------LDSDEIIQVGIAIVQNKKIIETYDTFIACNNEIPAFI 53

Query: 58  LQY-------LRD--------ETVMC-------VAHNSLFERILFKKTL---GIDIPSKR 92
                     L D          ++        VAHN  F+    +K     G     + 
Sbjct: 54  QSLTKIDAFDLVDAPNFSHVASHIIKLLDGCVFVAHNVQFDLRFLQKYFSEAGHKFQPRY 113

Query: 93  WICT 96
            I T
Sbjct: 114 IIDT 117


>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 209

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + LCA  + D   V++      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPSKRW------I 94
           D  +  +    L+Q +        V ++  +++ +     +K LG  +P++         
Sbjct: 90  DLHDGLSEKEALIQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL+  C  L+        
Sbjct: 150 D-KLEKHLPNAYFDLSLEAICRHLDLPLQDKHD 181


>gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis FRI909]
          Length = 902

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 17/147 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNG 104
           + +  D+ Q ++D   + VAHN  F+    KK      I    KR + T  L   A    
Sbjct: 72  NEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLELFKIAFPTD 129

Query: 105 LPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
               L     + +                 K +I  F K           +  ++     
Sbjct: 130 KSYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEK-FEQLHLDTQKQLYYLSKNLK 188

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGER 185
           +  Y           ++   P    E+
Sbjct: 189 YDLYHILFEMV--RNYQTKPPNIQFEQ 213


>gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
 gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
          Length = 194

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 33/152 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L  V V      ++            E    W        
Sbjct: 18  MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 72

Query: 46  ---DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICT 96
              D       P     +  Y + +  + VAHN+ F+  +    L    +    +  +CT
Sbjct: 73  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 131

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKM 125
              +R          L   C  LN        
Sbjct: 132 VKSSRRLFPEFPNHRLNTVCENLNIQLDHHHD 163


>gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15]
          Length = 375

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|297606613|ref|NP_001058743.2| Os07g0112400 [Oryza sativa Japonica Group]
 gi|255677453|dbj|BAF20657.2| Os07g0112400 [Oryza sativa Japonica Group]
          Length = 768

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 23/139 (16%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           ++      A+P+ L ++L D  +  V   +  +R +      + + S R     + A   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASARE----LRAVAA 154

Query: 104 GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +S++      L +                             +  +         EY
Sbjct: 155 MGNASMEAMADRFLGYPGI------------------AKPTNVSMSAWHAPYLSIEQVEY 196

Query: 163 CKRDVEATRELFKRLIPLS 181
              D      L   L P  
Sbjct: 197 ACVDAYLAFRLAVHLCPAP 215


>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
 gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 35/197 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E        + G + Y + A +       +D    L D T        L   +  
Sbjct: 33  VALDTE--------RAGAFRYFQGAYLV--QLRREDTGTFLIDPTAF-PDLEPLGAAI-- 79

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
                + H++  +     +   I +  K    T + A+                      
Sbjct: 80  GKAEWILHDATTDMPWLAE---IGMRPKLLFDTELAAKLLNF--------ERFGLGSLT- 127

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +   G           +    +     +     Q + EY   DVE   +L + L      
Sbjct: 128 EQVLG----------IMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGE 177

Query: 184 ERDLWLLDQTINDRGYR 200
                  +Q      Y 
Sbjct: 178 AGKDDWAEQEFEHLLYF 194


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 22/142 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-----LC--AYAWDDEPVKLWDRTE--- 49
            +  D ET          +   A   + A I      L         +  ++   T    
Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQWTELIDPQLQIGPKTTEITGITNEML 480

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN 103
                   +L+  +D     + VAHN+ F++       K +G++  +  ++ T  LAR  
Sbjct: 481 RGQETLDVVLRKFKDFTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPFLDTLPLARLM 540

Query: 104 ---GLPSSLKNACLALNFSEHL 122
                   L +     N     
Sbjct: 541 YKGMRNYRLGSLAKKFNVELIN 562


>gi|222636324|gb|EEE66456.1| hypothetical protein OsJ_22851 [Oryza sativa Japonica Group]
          Length = 449

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 23/139 (16%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           ++      A+P+ L ++L D  +  V   +  +R +      + + S R     + A   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASARE----LRAVAA 154

Query: 104 GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +S++      L +                             +  +         EY
Sbjct: 155 MGNASMEAMADRFLGYPGI------------------AKPTNVSMSAWHAPYLSIEQVEY 196

Query: 163 CKRDVEATRELFKRLIPLS 181
              D      L   L P  
Sbjct: 197 ACVDAYLAFRLAVHLCPAP 215


>gi|242280286|ref|YP_002992415.1| hypothetical protein Desal_2824 [Desulfovibrio salexigens DSM 2638]
 gi|242123180|gb|ACS80876.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 285

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 45/170 (26%), Gaps = 38/170 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQSAMPSDLLQYLRDE 64
           IDIET              A    IT  A  W+ + +K             ++ +Y    
Sbjct: 89  IDIETTGTD----------AHSCDITTIAL-WNGKEIKTYVQGKNLYDFEEEIAKY---- 133

Query: 65  TVMCVAHNSL-FERILFKKTLGID-----IPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             + V+ N   F+    +K  GI      I  +         R+ G+   LK        
Sbjct: 134 -PLIVSFNGKCFDVPFIEKYFGIKVDAAHIDLRFVF------RSLGITGGLKGIERYFGM 186

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                +      L   F          +       +A +    Y   D  
Sbjct: 187 DRGDAE-----GLDGYFAV----LLWNEYEMNGDERALETLLAYNVLDSV 227


>gi|125557004|gb|EAZ02540.1| hypothetical protein OsI_24650 [Oryza sativa Indica Group]
          Length = 496

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 23/139 (16%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           ++      A+P+ L ++L D  +  V   +  +R +      + + S R     + A   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASARE----LRAVAA 154

Query: 104 GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +S++      L +                             +  +         EY
Sbjct: 155 MGNASMEAMADRFLGYPGI------------------AKPTNVSMSAWHAPYLSIEQVEY 196

Query: 163 CKRDVEATRELFKRLIPLS 181
              D      L   L P  
Sbjct: 197 ACVDAYLAFRLAVHLCPAP 215


>gi|22831296|dbj|BAC16150.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|24414042|dbj|BAC22291.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 752

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 23/139 (16%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           ++      A+P+ L ++L D  +  V   +  +R +      + + S R     + A   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASARE----LRAVAA 154

Query: 104 GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
              +S++      L +                             +  +         EY
Sbjct: 155 MGNASMEAMADRFLGYPGI------------------AKPTNVSMSAWHAPYLSIEQVEY 196

Query: 163 CKRDVEATRELFKRLIPLS 181
              D      L   L P  
Sbjct: 197 ACVDAYLAFRLAVHLCPAP 215


>gi|195329844|ref|XP_002031620.1| GM26098 [Drosophila sechellia]
 gi|194120563|gb|EDW42606.1| GM26098 [Drosophila sechellia]
          Length = 583

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 45/187 (24%), Gaps = 35/187 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  D E      +   G         + L   +       L+       +P DL + L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHRGLCALFRLCHMKQIPKDLRELL 127

Query: 62  RDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            D+ V+ V         + +      G+ +           A T      L+  C+    
Sbjct: 128 EDDDVIKVGVAPQE---DAMKLSHDYGVGV-----------ASTLD----LRFLCVMAGH 169

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK                 C+            +Y   D      ++++L 
Sbjct: 170 KP----EGLGKLSKTHLNYTLDKHWRLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLC 225

Query: 179 PLSDGER 185
                + 
Sbjct: 226 RDLQPKH 232


>gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
 gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
          Length = 189

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 44/129 (34%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------KLWDRTE------ 49
            +F+D ET    P              I   +Y   DE +       + +          
Sbjct: 2   YVFLDTETTGLHP------------GQIAQLSYLVTDEELNIKKAFNQYYSVEHMSRSAA 49

Query: 50  -----QSAMPSDL----------LQYLRDETV-MCVAHNSLFERILFKK---TLGIDIPS 90
                   +  +L           + L D    + + HN  F+    K     LG +   
Sbjct: 50  RIHGLTQDILEELSSGLVFEDTIKEVLSDLKYSVIIGHNISFDIRFLKAEIERLGEEYVP 109

Query: 91  KRWICTSVL 99
           K   CT   
Sbjct: 110 KEKFCTMCH 118


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 36/145 (24%), Gaps = 38/145 (26%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQSAMPSDL--- 57
              +D ET         G+ AY ++ +         +  +  +     +           
Sbjct: 12  YCVLDTETT--------GLSAYYDEVIEIGI-LRVRNGEITDRYEQLIKPENEIDGFITS 62

Query: 58  -----------LQYLRD---------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
                         + D          + + V HN+ F+          DI    ++ T 
Sbjct: 63  LTGITNEMVADKPAIEDVKSDVLAFLGSDIIVGHNTSFDVRFLAAGFHEDIA-NEYMDTM 121

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
             AR          L +    L  +
Sbjct: 122 QFARKLYPDLTHHRLSDLSEYLYLT 146


>gi|302669686|ref|YP_003829646.1| hypothetical protein bpr_I0316 [Butyrivibrio proteoclasticus B316]
 gi|302394159|gb|ADL33064.1| hypothetical protein bpr_I0316 [Butyrivibrio proteoclasticus B316]
          Length = 254

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 52  AMPSDLLQYLRDETVMCVA-HNSLFERILFKKTLGIDIPSKRWICTS-VLAR 101
              +D++Q+L +  +  +  +N+ F+    +     ++ +  W     + A 
Sbjct: 137 EALNDIVQFLENNNIAKIFAYNAKFDYSHLR-----ELSAFEWYDIMRLAAY 183


>gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
 gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
          Length = 835

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 21/157 (13%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART--- 102
           +   +   + Q + D   + VAHN  F+  L  + L   G ++ + R   T  L++    
Sbjct: 86  DFGQVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGFELRTPRI-DTVELSQVFYP 142

Query: 103 NGLPSSLKNACLALNFS----EHLTKM--------EEGKALIARFCKGSIDSPPYDCTRA 150
                SL     +LN                     + KA I+   K  +++        
Sbjct: 143 CLEKYSLGALAESLNIELTDAHTAIADARATAQLFIKLKAKISSLPKEVLETILTFADNL 202

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                  +   Y + D    +E +     +   E+ +
Sbjct: 203 LFESYLLIEEAYQEADFVNPKEYYFWQGLVLKKEKAV 239


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
           P+ K     Y+    +          P +         +   + +Y      +  AHN+ 
Sbjct: 55  PISKSAKNNYSRAFRVHGI-------PYEAVSGKCFDDI--KIKKYFFHADSVF-AHNAS 104

Query: 75  FERILFKKTLGIDIPSKRWICTS 97
           F+R    +    DI   +W CT 
Sbjct: 105 FDRSFLYRMYPEDINELKWYCTM 127


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 65  TVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
            +    HN  F+        +   +DI ++  + T  ++R         +L +     N 
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 24/115 (20%)

Query: 4   LFIDIETRSPQPLP------KVGVWAYAEQAVITLCAYAWDD--EPVK----------LW 45
           + +D+ET              +  + Y     I      ++   +P K            
Sbjct: 42  ILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKPAKPISSEVTKLTGI 101

Query: 46  DRT--EQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           D    E  A+ P ++  +    T + VAHN+ F+R   ++          W C+ 
Sbjct: 102 DNAMVEGKAINPDEVAAF--AGTSLVVAHNAAFDRRFLERFC-HAFAGNPWACSM 153


>gi|270610572|ref|ZP_06221670.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318079|gb|EFA29335.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 164

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 10/46 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR 47
             + +D ET S   +           A +   ++A ++        
Sbjct: 129 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPL 164


>gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665]
 gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 416

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 27/167 (16%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            L     +   + L D      + + L + L    V  + H +  +     +     +  
Sbjct: 65  MLVQLKREGAGIWLVDPEALDGL-APLQEALT--GVEWILHAASQDLPCLAEQ---GLRP 118

Query: 91  KRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            R   T + AR  GLP   L      L                     G   +  +    
Sbjct: 119 DRLFDTELAARVAGLPRVGLVAVLEEL--------------------LGVTLAKEHSAAD 158

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
            +     +    Y   DVE    L + LI   + +  L   +Q    
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEH 205


>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
 gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
          Length = 259

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 39/160 (24%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVH-YEGH-KIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVKLWDRTEQSAMPSDLLQYLRD---------ETVMCVAHNSLFERILFKKTLGI---DI 88
                       +         D              V HN+ F+         +   DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PSKRWICT----SVLARTN--GLPSSLKNACLALNFSEHL 122
           P     CT     +LAR    G  ++L   C         
Sbjct: 124 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTK 163


>gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813]
          Length = 821

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 21/157 (13%)

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART--- 102
           +   +   + Q + D   + VAHN  F+  L  + L   G ++ + R   T  L++    
Sbjct: 72  DFGQVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGFELRTPRI-DTVELSQVFYP 128

Query: 103 NGLPSSLKNACLALNFS----EHLTKM--------EEGKALIARFCKGSIDSPPYDCTRA 150
                SL     +LN                     + KA I+   K  +++        
Sbjct: 129 CLEKYSLGALAESLNIELTDAHTAIADARATAQLFIKLKAKISSLPKEVLETILTFADNL 188

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187
                  +   Y + D    +E +     +   E+ +
Sbjct: 189 LFESYLLIEEAYQEADFVNPKEYYFWQGLVLKKEKAV 225


>gi|262212315|gb|ACY35774.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 VAIQERAKSGVLKGLDGR 140


>gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
 gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
          Length = 201

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 43/152 (28%), Gaps = 33/152 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L  V V      ++            E    W        
Sbjct: 25  MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 79

Query: 46  ---DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICT 96
              D       P     +  Y + + ++ VAHN+ F+  +    L    +    +  +CT
Sbjct: 80  HQEDVRNAPKFPEVWQTIQPYFQ-KNLLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 138

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKM 125
              +R          L   C  LN        
Sbjct: 139 VKSSRRLFPEFPNHRLNTVCENLNIQLDHHHD 170


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEP------VKLWDRTEQ-- 50
              +D+ET    P    + ++G+    +  VI   +   + E       V++ + T+   
Sbjct: 446 YCVLDLETTGFSPKLEKITEIGIMKVKDGKVIDKFSTFVNPEKPIPPRVVEVTNITDDMV 505

Query: 51  ---SAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN 103
                +     + L   E  + VAHN+ F+    +     LG D     ++ T  LA+  
Sbjct: 506 RNAETIDKVFPKMLEFIEGSILVAHNAEFDIGFLRHYAKVLGHDFD-FTYLDTLSLAQDL 564

Query: 104 GL---PSSLKNACLALNFS 119
                   L      L   
Sbjct: 565 FPQYKSYKLGRIAKNLGIK 583


>gi|16579841|gb|AAL26656.1| unknown [Staphylococcus aureus]
          Length = 83

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY-----DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           VQ ++  I    +    K         I+L +HD I+ E  D    +  ++  LM
Sbjct: 5   VQTVASYIFKHILLEVYKAQCTQKSFQIILPIHDAIMIECDDEE--TAQSVAQLM 57


>gi|110641921|ref|YP_669651.1| ribonuclease D [Escherichia coli 536]
 gi|300981914|ref|ZP_07175784.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|110343513|gb|ABG69750.1| ribonuclease D [Escherichia coli 536]
 gi|300307392|gb|EFJ61912.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|324011590|gb|EGB80809.1| ribonuclease D [Escherichia coli MS 60-1]
          Length = 371

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 29/143 (20%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLC-AY---------------AWDDEPV 42
            +  D+ET         L ++        A I    +Y               +  D+ V
Sbjct: 426 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPERPISELITRLTSITDDDV 485

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
           +         + +D   +L DE  + VAHN+ F+     K+    G++  +   I T  +
Sbjct: 486 RDAPVE--KEVMTDFYNWL-DEDDILVAHNAKFDLGFIDKSFERLGLENKNNASIDTLFI 542

Query: 100 ARTNG---LPSSLKNACLALNFS 119
           +R          L N        
Sbjct: 543 SRAENKEAKRHGLSNLAKMYKVR 565


>gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
 gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
          Length = 185

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 19/137 (13%)

Query: 2   SKLFIDIETRSP--QPLPKVGVWAYAEQAVITLCAYAWDDE--------PVKLWDRTEQS 51
           S + +D ET +     +  VG+    +  ++       +           V      +  
Sbjct: 5   SFIALDFETANKKRTSICSVGMVKVVDNEIVETFYTLVNPHDYFSETHIHVHGIHPKDVK 64

Query: 52  AMPS--DLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNG 104
             P   ++  Y+      +  VAHN+ F+  +     K L I +PS  + C+  LAR   
Sbjct: 65  DAPDFKEVFPYMLQFINQLPVVAHNAAFDMGVLHQSLKHLNIAVPSLTYFCSYQLARRTI 124

Query: 105 --LPSSLKNACLALNFS 119
                 LK+     N +
Sbjct: 125 KAYRYGLKHLMNHYNLN 141


>gi|170086167|ref|XP_001874307.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651859|gb|EDR16099.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1064

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 19/102 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQSAMPSDLLQYL 61
           L  D+ET     +P    +       +  CA + +   V +  W      + P  L+   
Sbjct: 125 LTFDVET-----MPNYHPYP------VLACAASLNSWYVWISPWLLGHSDS-PQYLIP-F 171

Query: 62  RDETVM--CVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLA 100
            D T+    V HN  ++R  + ++   +     R+I T  L 
Sbjct: 172 GDPTIPRVIVGHNVSYDRGRILEEYNVVSTK-NRFIDTMALH 212


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  DIET         + ++G        ++   +   +      +  TE         
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLART 102
                  +++    D     + VAHN+ F+    K+     L ID      I T  +AR 
Sbjct: 487 ANEPKIDEVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARD 545

Query: 103 NGL---PSSLKNACLALNF 118
                    L +    L  
Sbjct: 546 LFPDLKKYGLGDLNKTLGL 564


>gi|262212275|gb|ACY35754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R LA          +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLAHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  G+ +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGRGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAVQERAKSGVLKGLDGR 140


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 127 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 185

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 186 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 245

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 246 FLYPHFKNHRLNTLTKKFNI 265


>gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 374

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 51/195 (26%), Gaps = 36/195 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSD 56
           ++ +D E     T                   + L    +D E + L D  T     P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113
               LRDE V    H    +  +F      +     +I T +LA   G P S        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNAF--ETLPTPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 114 LALNFSEHLTK---MEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRD 166
             +  +   ++       + L  + C  +        P         +A           
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDEC 183

Query: 167 VEATRELFKRLIPLS 181
           +   +     L P  
Sbjct: 184 LLLCQRKQDILAPAL 198


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY-----AWDDEPVKLW 45
            DIET     +     ++G     E              I + ++       D+  VK  
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVK-- 454

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN 103
           D      +    L+     +V+ VAHN+ F+    K K    ++      + T  L+R  
Sbjct: 455 DAPSIEEILPKFLE-FASNSVL-VAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHL 512

Query: 104 ---GLPSSLKNACLALNFS 119
                   L      L   
Sbjct: 513 YKDLKNYKLDTLADHLQVK 531


>gi|158521964|ref|YP_001529834.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158510790|gb|ABW67757.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 959

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 31/173 (17%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            DIET   +   +VG W  A++  I+       D     +D   ++ + + + +    + 
Sbjct: 789 FDIET--QRSAAEVGGWHRADRMGISCVVL--YDSATDTYDAFLENQVAAFIRRL--SDF 842

Query: 66  VMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL---ARTNGLPSSLKNACLALNFSEH 121
            + V  N+  F+  +       D+     +   +L    +T G   SL +          
Sbjct: 843 DLVVGFNNKRFDNQVLAGYSDADLSRLPTLD--ILEEVHKTLGYRLSLDSLAE------- 893

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                     I    K S +                   EYCK+DV+ T++L+
Sbjct: 894 ----------ITLGAKKSAN--GLQALIWWQQGEIDKIVEYCKKDVQITKDLY 934


>gi|321313129|ref|YP_004205416.1| putative hydrolase [Bacillus subtilis BSn5]
 gi|320019403|gb|ADV94389.1| putative hydrolase [Bacillus subtilis BSn5]
          Length = 286

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 42/259 (16%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M  + ID++       S            A  A I                         
Sbjct: 1   MKCIAIDLDGTLLNKESVISAENREAIKRAVDAGIL---VTICTGRATF----------- 46

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNAC 113
           D+   L D  +  +A N                       T   +++RT     + K   
Sbjct: 47  DVKALLNDLDIPIIAAN-----------------GGTIHDTGYRLISRTLMDQEAGKAIA 89

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             L       ++     L++ F   +      D  ++ +                 T+  
Sbjct: 90  DYLLSKNIYFEVYTDDHLLSPFDGEAKLHAELDILKSANPNE----QTDELWQGAMTQFK 145

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
              + P+   E      +       +  D+D + + +E +   +K       K    I+ 
Sbjct: 146 QFGIKPIPHIESVFDGSENIYKLLCFSFDMDKLKQAKEELKHHKKLAQTSSGKHIIEILP 205

Query: 234 SSRQTYALRMYLFLITGID 252
           +S         L  + GI+
Sbjct: 206 ASSGKGRALTKLADLYGIE 224


>gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 415

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 27/167 (16%)

Query: 31  TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90
            L     +   + L D      + + L + L    V  + H +  +     +     +  
Sbjct: 65  MLVQLKREGAGIWLVDPEALDGL-APLQEALT--GVEWILHAASQDLPCLAEQ---GLRP 118

Query: 91  KRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
            R   T + AR  GLP   L      L                     G   +  +    
Sbjct: 119 DRLFDTELAARVAGLPRVGLVAVLEEL--------------------LGVTLAKEHSAAD 158

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196
            +     +    Y   DVE    L + LI   + +  L   +Q    
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEH 205


>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
 gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
          Length = 186

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTN--- 103
            A+  D L +LR  +   VAHN+ F+         +TLG       +I T  L+R     
Sbjct: 85  EAVLPDFLAHLR-PSDTIVAHNANFDINFLYDNCMRTLGKPFS-YDFIDTLRLSRALFPQ 142

Query: 104 GLPSSLKNACLALNF 118
                L +       
Sbjct: 143 ERQHRLVDLIQRFGI 157


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 1437

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 24/107 (22%), Gaps = 11/107 (10%)

Query: 47  RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
                  P  +  +L   +  + VAHN+ F+           G+       I T  LAR 
Sbjct: 480 VANARPEPEVMQDFLDFCQGTILVAHNASFDVGFIDAAYQRNGLPTIENPVIDTLELARY 539

Query: 103 NGLPSS---LKNACLALN----FSEHLTKMEEGKALIARFCKGSIDS 142
                    L       N                  +A         
Sbjct: 540 LYPHLKSFRLNTLSKHFNVSLEHHHRAIYDATSTGALAWIFVKEAKE 586


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  DIET         + ++G        ++   +   +      +  TE         
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLART 102
                  +++    D     + VAHN+ F+    K+     L ID      I T  +AR 
Sbjct: 487 ANEPKIDEVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARD 545

Query: 103 NGL---PSSLKNACLALNF 118
                    L +    L  
Sbjct: 546 LFPDLKKYGLGDLNKTLGL 564


>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
          Length = 254

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQ---------PLPKVGVWAYA---------------------EQAVIT 31
            ++ +D ET              + ++G                          E   + 
Sbjct: 7   RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKPARLVDPEAFEVH 66

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDI 88
             +         L D+   + +  + L ++R      V HN+ F+             DI
Sbjct: 67  GIS------DEFLQDKPTFAQIADEFLDFIR--GAELVIHNAPFDIGFMDYEFSKLNRDI 118

Query: 89  PSK----RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           P      +   + VLAR    G  ++L   C   +     
Sbjct: 119 PPTANFCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSK 158


>gi|86150923|ref|ZP_01069139.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88596814|ref|ZP_01100051.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562746|ref|YP_002344525.1| hypothetical protein Cj1132c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315124608|ref|YP_004066612.1| hypothetical protein ICDCCJ07001_1089 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842093|gb|EAQ59339.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88191655|gb|EAQ95627.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360452|emb|CAL35249.1| conserved hypothetical protein Cj1132c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315018330|gb|ADT66423.1| hypothetical protein ICDCCJ07001_1089 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 264

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 16/187 (8%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILF-KKTLGIDIPSKRWICTSVLART 102
            D   +  M  +   ++ +     V+ N   F+  +   + L  ++ +  ++ T   +  
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDT--QSDK 136

Query: 103 NGLPSS----LK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                +    LK  +   +L  +    K++   +++    K   D    +  +  +    
Sbjct: 137 WNNYKTRFSELKHCDLLESLGSNGRGIKLDTLCSMVGLPGKY--DVHGDEVMKLFYENKL 194

Query: 157 QLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGY--RIDLDLVLKLQEL 212
           +   EYC+ DV  T  LF +  LI  +  E D       + D     + D        + 
Sbjct: 195 EKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLCAKKSDRSYTEVFAKA 254

Query: 213 IAQERKK 219
              E  K
Sbjct: 255 CESEISK 261


>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
 gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
          Length = 1465

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 45/181 (24%), Gaps = 34/181 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             + +D+E             +Y     +   + A +D    L D          L Q  
Sbjct: 266 RVIAVDLE--------HHSYRSYMGLTCLMQISTAQED---FLVDTLALRGKLQTLNQVF 314

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            D   + V H S  + +  ++ LG+ I       T   AR    P  SL           
Sbjct: 315 CDPEKVKVLHGSDMDILWLQRDLGLYI--VNLFDTGRAARLLQYPRFSLAYMLKRH---- 368

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                          C    D                +   Y + D      ++ RL   
Sbjct: 369 ---------------CNIDADKQYQLADWRTRPLDKNMVK-YAREDTRYLLFIYDRLKKE 412

Query: 181 S 181
            
Sbjct: 413 L 413


>gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 177

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLW-----DR 47
           M+ + +D ET +  P     +         I      +      +D   +++      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNEIVDRFYTVINPQMLFDARNIQVHQITAEDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                M     +   L    ++  AHN+ F+  +      +   I+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARY-NIEEPHYLVIDTLATSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L      L+  
Sbjct: 120 LFEPELPNHKLDTVSSTLDVE 140


>gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39]
 gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39]
          Length = 375

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
 gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
          Length = 245

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 42/156 (26%)

Query: 2   SKLFIDIETRSPQP------------------LPKVGVWAYA--------EQAVITLCAY 35
            ++ +D ET    P                  +    +  Y         E A +     
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 36  AWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLG---IDI 88
              +         +    +   +           + HN+ F+        + +G   I+ 
Sbjct: 64  EVLEAK-NAPPFAQVGKQIADFIR------GAELIIHNAKFDVGFLNMEFRRMGLPSIEE 116

Query: 89  PSKRWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
              +   T  +AR    G  +SL   C   +     
Sbjct: 117 LGCKVTDTLAMAREMFPGQKASLDALCNRFSVDRSK 152


>gi|331683306|ref|ZP_08383907.1| ribonuclease D [Escherichia coli H299]
 gi|331079521|gb|EGI50718.1| ribonuclease D [Escherichia coli H299]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|262342153|gb|ACY54587.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKVMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|262212273|gb|ACY35753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKVMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|302902991|ref|XP_003048764.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
 gi|256729698|gb|EEU43051.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
          Length = 1143

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 5/165 (3%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +++ + A  G   V AD+   E  + + + G+        N          K+
Sbjct: 696 KNRVGSELKAMVKAPKGYCFVGADVDSQELWIAS-LVGDATFKLHGGNAVGFMTLEGTKS 754

Query: 417 FNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T +   +       R   KV      Y  G K   T+      DL +      ++  +
Sbjct: 755 QGTDLHSRTASILGISRNNAKVFNYGRIYGAGLKFAATLLRQFNPDLSERQTTETASRLY 814

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517
            + +  +++   +  +       +  +    E   +  R +   +
Sbjct: 815 ANTKGTKTNRKILYKRPFWRGGTESFVFNKLEEFAEQERPRTPAL 859


>gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 432

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 68/249 (27%), Gaps = 25/249 (10%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKR---WICTSVLARTNGLP-- 106
           +   + + + +++ VAHNS F+   F       G D    +   ++ T  +AR+      
Sbjct: 89  AAFKEAVSNTSIL-VAHNSSFDENCFFSECYRRGFDTEPFKHVHFVDTLKMARSVLPGLH 147

Query: 107 -SSLKNACLAL------NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQ 157
              L                        GK   L+        D      T      A  
Sbjct: 148 NHKLLTVYKYYFGHEFDAHDALNDSRACGKIYFLLRDNEFKMKDVGIEKVTLKASDIASI 207

Query: 158 LFGEYCKRDVEATRELFKRLIPLS----DGERDLWLLDQTINDRGYRI-DLDLVLKL-QE 211
           +     K+  E    L+ +  P +      E++     Q  +   +   D +    +   
Sbjct: 208 IGMNPYKKPKEVLDNLWAKYAPETFEGKTKEQEALDTIQKCDASKFLFKDAETYKSMNSS 267

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY-LFLITGIDLVDMSEGTLKSILSHSNI 270
            I ++   +   +   ++      +         LF   G    D +    + +      
Sbjct: 268 DIERKFNAVSNQLHMKSNLSKPDIKLVEQHLRKTLFTNHGTRHEDTTASNYEDLKEDETF 327

Query: 271 TQLAKDLIL 279
            +     I 
Sbjct: 328 YKYDVCSIE 336


>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
 gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT----SVLARTN- 103
            +  + L+++R      V HN+ F+           G D+P     CT     V+AR   
Sbjct: 81  DVVDEFLEFIR--GAELVIHNAPFDIGFMDYEFAKLGRDLPKTETFCTITDSLVMARRLF 138

Query: 104 -GLPSSLKNACLALNFSEHL 122
            G  +SL   C         
Sbjct: 139 PGKRNSLDALCNRYEIDNSK 158


>gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11]
 gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11]
 gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042]
          Length = 375

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 67  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPMS 115


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 28/144 (19%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV------------ 42
           ++ + ID ET    P    + +V    Y     +     +Y   + P+            
Sbjct: 8   LNYVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITN 66

Query: 43  -KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
            ++ D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  
Sbjct: 67  YRVSDAPTIEEVLPVFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVF 124

Query: 99  LA--RT-NGLPSSLKNACLALNFS 119
           LA     +     L+     L   
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIR 148


>gi|126175491|ref|YP_001051640.1| 3'-5' exonuclease [Shewanella baltica OS155]
 gi|125998696|gb|ABN62771.1| 3'-5' exonuclease [Shewanella baltica OS155]
          Length = 315

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L  D ETR+             +   ++L   A  D    L+         + L   L D
Sbjct: 133 LGFDTETRASF-------ERGVQHP-LSLIQIATAD-ACYLFQHAILGEQFTQLKTVLED 183

Query: 64  ETVMCVAHNSLFERILFKKTLGIDI 88
           E ++ V      +    K+  GI++
Sbjct: 184 ENILKVGVGLRSDAQALKRQWGINV 208


>gi|320173702|gb|EFW48889.1| Ribonuclease D [Shigella dysenteriae CDC 74-1112]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD  +    H    +  +F    G ++  +  I T +L+   G P S
Sbjct: 63  KAILRDPAITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILSAFCGRPMS 111


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN 103
            +++++++ D+  + V+HN+ F+  + +      GI  P   + CT V AR +
Sbjct: 76  LTEIVEFIGDD--IVVSHNASFDIGVIRYACAADGIAWPRIDFFCTLVAARRH 126


>gi|313126351|ref|YP_004036621.1| exonuclease [Halogeometricum borinquense DSM 11551]
 gi|312292716|gb|ADQ67176.1| predicted exonuclease [Halogeometricum borinquense DSM 11551]
          Length = 251

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 42/172 (24%), Gaps = 22/172 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQ 59
             F DIET                Q  +T  ++  D E   L    D T        L +
Sbjct: 86  TCFFDIETTGLDS----------AQNDVTTVSFHRDGETTTLVRGHDLTA-----EALRE 130

Query: 60  YLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
              D   +  + N   F+    +    I I +          R   L   LK+   A+  
Sbjct: 131 QFTDAA-LVASFNGKRFDVPFLEDNFDISIDTPHI-DLMYPCRRLDLTGGLKSIEKAVGI 188

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
                    G+  +  + +   D                        DV   
Sbjct: 189 DRDRP-DLSGRDAVRLWHQYERDGDEDALDTLVSYNRDDTANLSNLMDVVVE 239


>gi|157145434|ref|YP_001452753.1| ribonuclease D [Citrobacter koseri ATCC BAA-895]
 gi|157082639|gb|ABV12317.1| hypothetical protein CKO_01177 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 28/112 (25%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           + +D E     T                   + L    +D E V L D      +     
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHVALID-PHG--ITDWSP 61

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
           L   LRD  +    H    +  +F  T G ++  +  I T +LA   G P S
Sbjct: 62  LRAVLRDTAITKFLHAGSEDLEVFLNTFG-EL-PQPLIDTQILAAFCGRPLS 111


>gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Acyrthosiphon pisum]
          Length = 522

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 37/150 (24%), Gaps = 19/150 (12%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89
           + L   A ++    L   ++   +PS L   L +  ++ V    L +  L      I++ 
Sbjct: 76  VALLQIADNNGMCSLIRLSKFKTIPSSLSDILSNSNIIKVGVAILDDAHLLMNDYNINVS 135

Query: 90  SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149
                          L              E        K                  + 
Sbjct: 136 G-----------CIDLRY----LAKESCLEERSLSALAFK----LLGCELDKDWHVRASD 176

Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
               +      EY   D     ++F++L  
Sbjct: 177 WEAEELNDRQTEYAALDAYVAVKIFEQLRN 206


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 10/111 (9%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL-- 105
            +  D  +++ D+  + VAHN+ F+        K+ L  +      I T  LAR      
Sbjct: 488 DVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEF 545

Query: 106 -PSSLKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
               L   C   +       +               +          +   
Sbjct: 546 KNHRLNTLCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQL 596


>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 37/144 (25%)

Query: 6   IDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDE--------------PVKLWD 46
           +D+ET    P     + ++G+     Q          DDE               V    
Sbjct: 7   LDLETTGFSPARGDRIIEIGLVRLDPQGH-------VDDEWSTLVNPRRTVRATRVHHIT 59

Query: 47  RTEQSAMP--SDLLQYLRDE--TVMCVAHNSLFERILF---KKTLGIDIPSKRW--ICTS 97
             + +A P  ++L   L D+    + VAHNS F+        +T G+ IP +    +CT 
Sbjct: 60  SADVAAAPTMAELAPGLVDKLRDRVVVAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCTM 119

Query: 98  VLA--RTNGLPSSLKNACLALNFS 119
             +    +     L + C A   S
Sbjct: 120 RQSTRFLHARSRRLVDCCEAAGVS 143


>gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1266

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 73  SLFERILFKKT----LGIDIPSKRWICTSVLARTN-GLPSS-LKNACLALNFSEHLTKME 126
             ++  + ++      GI +  ++     +L+R               A+       KM 
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLI-EKMN 822

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L ++F  G   +   + T       W+ F  Y      AT
Sbjct: 823 ---HLKSKFMAGGKTNGYKEETLQKIWSDWEKFASYAFNKSHAT 863


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 10/111 (9%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL-- 105
            +  D  +++ D+  + VAHN+ F+        K+ L  +      I T  LAR      
Sbjct: 488 DVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEF 545

Query: 106 -PSSLKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
               L   C   +       +               +          +   
Sbjct: 546 KNHRLNTLCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQL 596


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 6   IDIETRSPQPL----PKVGVWAYAE-----------QAVITLCAY-----AWDDEPVKLW 45
            DIET     +     ++G     E              I + ++       D+  VK  
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVK-- 454

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTN 103
           D      +    L++  +   + VAHN+ F+    K K    ++      + T  L+R  
Sbjct: 455 DAPSIEEILPKFLEFASNS--VLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHL 512

Query: 104 ---GLPSSLKNACLALNFS 119
                   L      L   
Sbjct: 513 YKDLKNYKLDTLADHLQVK 531


>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
 gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
          Length = 390

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 59/229 (25%), Gaps = 16/229 (6%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LA 115
           + L D +VM V H    +  +F    G        + T ++A   G   S   A      
Sbjct: 87  ELLNDASVMKVLHACGEDLEVFHNAFGAI--PVPMVDTQIMAAFLGHGLSTGFAALVEQY 144

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           LN     ++            +   D          H     L   Y     +     + 
Sbjct: 145 LNVELDKSESRT-----DWLARPLSDKQLEYAAADVH----YLLPLYEILLEKVMEAGWW 195

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +     + E       +T N     +D+    +L+       K L    ++       + 
Sbjct: 196 Q-AAQQESELQASKRVKTPNADNAYLDIKGAWQLKPRELAILKPLATWRMQEAIRRDLAL 254

Query: 236 RQTYALRMYLFL-ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
              +     L +   G+      E     + S          ++ +   
Sbjct: 255 NFVFKEHDLLTVARLGLTSFKRMEEEGMDVRSVQRHGNRIAAIVKSARE 303


>gi|313675161|ref|YP_004053157.1| 3'-5' exonuclease, polb [Marivirga tractuosa DSM 4126]
 gi|312941859|gb|ADR21049.1| 3'-5' exonuclease, PolB [Marivirga tractuosa DSM 4126]
          Length = 233

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 75/238 (31%)

Query: 1   MSKLFIDIET------RSPQPLPKVGV----------------------WAYAEQAVITL 32
           M+ LFID+ET       +     +  +                        YAE   I +
Sbjct: 1   MAILFIDVETVPQAENYADLSEKEQSLWQHKASFLTKNEETAEEIYPKAGIYAEFGKIVV 60

Query: 33  CAYAWDDEP-------VKLWDRTEQSAMPSDLLQYLR---DETVMCVAHNSL-FERI--- 78
            +  W           V       ++ +  +L+Q L+   D   +   HN   F+     
Sbjct: 61  VSLGWMFGKENNRKLRVTTLANENEAQLLIELIQILQKVDDTNSVICGHNIKEFDIPYIC 120

Query: 79  --LFKKTLGIDIPSK-----------RWICTSVLARTNGLPS--SLKNACLALNFSEHLT 123
             +     G+ +PS             ++ T  + +         L       +      
Sbjct: 121 RRILIN--GLKLPSILDVSSMKPWQTPYLDTLEMWKFGDRKHYTKLDLLAHIFDLPTSK- 177

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                                            +   EYC++DV  T +L+ ++    
Sbjct: 178 ---------------DDIDGSQVYEVYYKEGDLKRIAEYCEKDVVLTCQLYLKMNGQP 220


>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
 gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
          Length = 384

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 41/164 (25%), Gaps = 21/164 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D  V L D              + D+ V+ V H +  +       LG  
Sbjct: 38  PQLCLIQLASPDVTV-LIDPIAPDIDLQPFFDLMIDKKVVKVFHAARQDIETI-YHLGGV 95

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T +     G                           I + C G         
Sbjct: 96  I-PSPLFDTQIAGSICGFG------------------DSISYDQIVQRCTGHHLDKSSRF 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           T  +     +    Y   DV   R+++  L    +  +    +D
Sbjct: 137 TDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHWMD 180


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 28/145 (19%)

Query: 2   SKLF-----IDIETRS---PQPLPKVGVWAYAEQAVITL-----------CAYAWDDEPV 42
            +L       DIET                  E   I              +Y   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  KLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              +  +      ++L    +     + VAHN+ F+        +  G+   +K+   T 
Sbjct: 472 ITNELIKDKPTIEEILPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
           +LAR          L      L   
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 164

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 25/138 (18%)

Query: 5   FIDIETRSPQPLPKVGVWA-YAEQAVITLCAYA-WDDEPVKL------------WDRTEQ 50
            ID ET + Q      V      +  I    Y+    EP                D  + 
Sbjct: 6   AIDFETANEQRTSVCSVGIVIVREGEIVDTYYSLIRPEPEYYTYWNTRVHGLTLADTAKA 65

Query: 51  SAMP---SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNG 104
              P    ++   +    +  +AHN  F+    K   +T  +D P   + CT   AR   
Sbjct: 66  PIFPTVWQEIAPLIE--GLPLIAHNKGFDESCLKAVFRTYSLDYPDYEFHCTLSTARRRI 123

Query: 105 ---LPSSLKNACLALNFS 119
                  L        + 
Sbjct: 124 KGLPNYQLHTVAAYFGYE 141


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
          Length = 1527

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTNGLPS 107
             +  + L +        VAHN+ F+     K    L I +       T  LAR      
Sbjct: 563 EEILPEFLSFCE--GCYLVAHNASFDIGFITKKAEFLNIPLTVTSV-DTVGLARVLLNHL 619

Query: 108 S---LKNACLAL 116
           +   L     AL
Sbjct: 620 NNFKLDTVAKAL 631


>gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591]
 gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591]
          Length = 373

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 24/112 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L      D    +     +   P  
Sbjct: 23  SEVALDTEFVRTRTYY---------------PQLGLIQLYDGDNLSLIDPLAIRDWAP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
               L++  +    H    +  +F    G       +I + +LA   G P S
Sbjct: 66  FRALLQNPQITKFLHAGSEDLEVFLNAFG--CLPSPFIDSQILAAFLGKPLS 115


>gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC
           43184]
 gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC
           43184]
          Length = 1266

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 73  SLFERILFKKT----LGIDIPSKRWICTSVLARTN-GLPSS-LKNACLALNFSEHLTKME 126
             ++  + ++      GI +  ++     +L+R               A+       KM 
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLI-EKMN 822

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L ++F  G   +   + T       W+ F  Y      AT
Sbjct: 823 ---HLKSKFMAGGKTNGYKEETLQKIWSDWEKFASYAFNKSHAT 863


>gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
 gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
          Length = 178

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 39/149 (26%)

Query: 1   MSKLFIDIET-----RSPQPLP-----------------KVGVWAYAEQAVITLCAYAWD 38
           M+ + +D ET      S   L                  K     +     I        
Sbjct: 1   MNFVAMDFETASGKRYSACSLALTIVRNDQVVDEFYSLIKPDTDFFWRNVQIHGI----- 55

Query: 39  DEPVKLWDRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFKKTL-GIDIPSKRW-- 93
                  D       P              + +AHN+ F+  + + +L   ++P  R+  
Sbjct: 56  ----HERDVANAPTFPEVWQHVAPFFQRDRLVIAHNAPFDNGVLRSSLEHYNLPPARYLT 111

Query: 94  ICTSVLARTN---GLPSSLKNACLALNFS 119
           + T   +R          L   C  L+  
Sbjct: 112 LDTVKTSRKFFPEFPNHKLDTVCDELDID 140


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 29/181 (16%)

Query: 2   SKLFIDIETRSPQP----------------LPKVGVWAYAEQAVITLCAYAWDDEPVKLW 45
             +  D+ET    P                  K   + Y  +    L  +  D   +   
Sbjct: 439 KMVVFDLETTGLSPEFNEIIEFGAVVFDPVTGKTTKYDYLFKPKQPLKQFTIDLTNITPE 498

Query: 46  DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLA 100
              ++  +  D  +   L  ++++ VAHN+ F+        K LG        I T  L+
Sbjct: 499 MLEDKKNIDDDFDKIYELIKDSIL-VAHNANFDFNFLNSLSKRLGYGDLQNTVIDTLTLS 557

Query: 101 RTNGL---PSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           R          L   C                 +   L   F K   +         +  
Sbjct: 558 RLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIAELKLTTPIIYDAD 617

Query: 154 Q 154
            
Sbjct: 618 L 618


>gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
 gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
          Length = 163

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 22/117 (18%)

Query: 5   FIDIETRSPQPLPKVGVWA-YAEQAVITLCAYA-WDDEPVKL------------WDRTEQ 50
            ID ET + Q      V         I    Y+    EP                D    
Sbjct: 6   AIDFETANEQRTSVCSVGVVIVRDGEIVDNYYSLIRPEPEYYTYWNTRVHGLTLADTACA 65

Query: 51  SAMP---SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
              P    ++   +    +  VAHN  F+    K   +T G+D P   + CT   +R
Sbjct: 66  PVFPTVWQEIAPRIE--GLTLVAHNKAFDESCLKAVFRTYGMDYPDYDFRCTLQASR 120


>gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 411

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 50/195 (25%), Gaps = 38/195 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             ID E         +G+  Y+ +A +       +     L D          L + L  
Sbjct: 39  FAIDTE-------RAMGI-RYSGRAYVV--QIRREGAGTFLIDPIGIEDRLGPLAELLA- 87

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SL-KNACLALNFSEH 121
            T + + H +  +     + LG +        T V     G    SL       L +   
Sbjct: 88  -TDVWILHAADQDLPCL-RELGFN--PPEIFDTEVAGILLGFERISLQAEVAEVLGY--- 140

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    L            P                 Y   DVE   EL +RL  + 
Sbjct: 141 --------GLAKEHSMADWSERPLAPE----------LRAYAALDVELLIELRERLTAML 182

Query: 182 DGERDLWLLDQTIND 196
                L  L +   +
Sbjct: 183 RAAGRLEWLHEECEE 197


>gi|148909381|gb|ABR17789.1| unknown [Picea sitchensis]
          Length = 175

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 15/97 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLR 62
           +  D E      L + G         + +   A++D  V L D  E   +        L 
Sbjct: 37  IGFDCE---GVDLARYG--------RLCIMQLAFED-AVYLVDAVEGGHLLMQACKPALE 84

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
              V  V H+   +        GI +     + T + 
Sbjct: 85  SVYVTKVVHDCKRDSEALYFQYGIKLN--NVVDTQIA 119


>gi|312210218|emb|CBX90305.1| hypothetical protein [Leptosphaeria maculans]
          Length = 799

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 17/109 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDRTEQ----SAMPSD 56
             L  DIE          G+ +  +Q  ++L   A +D          E       MP  
Sbjct: 249 KVLGFDIE------WKPFGIPSSIKQ-NVSLIQLACEDRIALFHISLFEGTAVEELMPPS 301

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105
           L   L    +  V      +     + LGI      +     L+R + L
Sbjct: 302 LKAVLESPDIYKVGVAIKGDFSRLARYLGIQARGV-FE----LSRLHNL 345


>gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
 gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
          Length = 407

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 40/159 (25%), Gaps = 18/159 (11%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           Q    L           L D T    +  +L   L D     + H +  +        G 
Sbjct: 60  QPRAYLIQLRRAGAGTALVDPTGFEDL-RELNAALAD--TEWILHAASQDLPCLA---GE 113

Query: 87  DIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145
            +   R   T + AR  G     L      L        +E+  +      +      P 
Sbjct: 114 GMRPPRLFDTELAARLCGFERVGLAALVEKL----LGFTLEKHHSAADWSTRP----LPA 165

Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
           D      +    L       D  A   L  +    +D E
Sbjct: 166 DWLTYAALDVELLVELRDILD--AELRLQGK-RDWADEE 201


>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 28/119 (23%)

Query: 2   SKLFIDIETR---SPQPLPKV------------GVWAYAEQAV------ITLCAYAWDDE 40
             L  D ET    S   +  +             ++A   +A       I   +      
Sbjct: 3   KILVFDTETTGFRSDDEVLTLAVVNGTGETMVDSMYAPVRKAEWPDAERINRIS------ 56

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
           P  + D         +L         + V +N  F+  L  +  GI I +       + 
Sbjct: 57  PAMVADCDPILTHREELECLFNAPDTLLVGYNIEFDIRLLAQ-SGIRITNANRHDVMLA 114


>gi|262212293|gb|ACY35763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
            +  R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YRTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 36/146 (24%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPV---------------KLW--- 45
            +D E      +   G+    +   I    A    D  V                     
Sbjct: 562 SLDSE-YVVFDIETTGLSK--KHNKIIEIGAVKVKDGEVVDTFSEFINPGVPIPYQIEQL 618

Query: 46  -----DRTEQSAMPSDLLQYL--RDETVMCVAHNSLFERILFKKT---LGIDIPSKRWIC 95
                D  + + M   ++          + VAHN+ F+    KK    LG+       + 
Sbjct: 619 TSINDDMVKDAPMYDVIVPRFVEFCGDDIVVAHNASFDTGFVKKNAEELGLRFD-NTVLD 677

Query: 96  TSVLARTNGLPSS---LKNACLALNF 118
           T  L+           L   C  L  
Sbjct: 678 TMTLSHILLPELGKFTLDRVCKELKV 703


>gi|88857892|ref|ZP_01132534.1| DNA polymerase II [Pseudoalteromonas tunicata D2]
 gi|88819509|gb|EAR29322.1| DNA polymerase II [Pseudoalteromonas tunicata D2]
          Length = 780

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 34/193 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-- 61
           + +DIE           V  Y++   + +   A       +   +++  +   L +Y   
Sbjct: 161 VSLDIE--CSGQGILFSVGLYSDDFDVVIMVGAPQHSEQNIVWVSDEEQLLVQLQRYFVE 218

Query: 62  RDETVMCVAHN-SLFERILF-----------------------KKTLGIDIPSKRW---- 93
           RD  V+ +  N   F+  L                        ++ +G  +   R     
Sbjct: 219 RDPDVI-IGWNVIDFDMSLLYRRAEQLGVPLYLGRAQQAMQLSERAVGKLLLPGRVVLDG 277

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           I T   A  +    SL +    L   + L + ++  A I    K             +  
Sbjct: 278 IDTLKNATYHFNSFSLASVAEQLIGEKKLIESDDRLAEIEHQFKY-DKLALAKYNLKDCQ 336

Query: 154 QAWQLFGEYCKRD 166
             W +F +    D
Sbjct: 337 LVWDIFKQEKLID 349


>gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
          Length = 438

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 34/145 (23%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVIT-----LCA------------YAWDDEPVKL 44
            D+ET         + ++G+    +   +      L               +  +E VK 
Sbjct: 16  FDLETTGGNHKSDKIIEIGLVK-IKNFEVIDQKNYLIQPEIKIPEFIQKLTSIKEEDVK- 73

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI----LFKKTLGIDIPSKRWICTSVLA 100
            D      +  ++L+++ D   + VAHN+ F+      + K+     + +K   CT+++ 
Sbjct: 74  -DSPVIEDVIDEILKFMGDS--ILVAHNTSFDVPFFNSVLKRLGKPQLKNKSL-CTNLMT 129

Query: 101 RTNGLPS---SLKNACLALNFSEHL 122
           +         +L             
Sbjct: 130 KYLIPNLMNSNLNYMSKIFGIKHKK 154


>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0630]
          Length = 929

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 32/144 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWD-----RTEQSAM 53
           +D+ET    P           Q    L         +A D  P ++        T  S  
Sbjct: 16  VDLETTGTDP-----TSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 54  PSDLLQYLRD---------ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                 Y  D         E  + VAHN  F+     + L   G    +   I T  LA+
Sbjct: 71  QVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYDFLARELVRCGTPPLTIPAIDTVELAQ 130

Query: 102 TNGLPSS---LKNACLALNFSEHL 122
                     L +   +L  S   
Sbjct: 131 IFLPTEKSFRLSDLSESLGLSHEN 154


>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
 gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
          Length = 233

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     +         E   I L                       A+   
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSK--- 91
               +   D+     + ++ +Q++       + HN+ F+        K +  +   +   
Sbjct: 58  GISTEFLQDKPLFQDIVTEFIQFVEGSE--LIIHNAPFDVGFLNSELKHVKWNKTLEDYC 115

Query: 92  RWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
           R + T +LAR    G  +SL   C          ++
Sbjct: 116 RILDTLILAREKHPGQRNSLDALCKRYEIDHFNREL 151


>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 236

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 36/145 (24%), Gaps = 31/145 (21%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVIT---------LCAYAWDDEPVKLW------ 45
             D+ET         +    V     QA +                +   V         
Sbjct: 11  AFDLETTGRNSRAARIVTASVTVVDHQAEVMREHEWLADPGVEIPTEASDVHGITTEQAR 70

Query: 46  ----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGID-IPSKRWICTS 97
                  E +   +  LQ L D  +  +A N+ ++  +        GI  +     +   
Sbjct: 71  REGRPAHEVTREVAAALQELFDSNIPVIAFNASYDFTVLAAESARYGIPQLTRFPVLDPY 130

Query: 98  VLARTNGL----PSSLKNACLALNF 118
           ++ +          +L   C     
Sbjct: 131 IMNKQVDRYRKGKRTLTALCEEYGV 155


>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
 gi|307768577|gb|EFO27811.1| 3'-5' exonuclease [Loa loa]
          Length = 845

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102
            + D          L +   D  ++ V H +  + +  ++  GI +       T    R 
Sbjct: 313 YIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYV--VNMFDTYKAMRV 370

Query: 103 NGLP 106
               
Sbjct: 371 LNYS 374


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 88/347 (25%), Gaps = 82/347 (23%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPV--KLWDRTEQS----------- 51
           +DIET             Y E+  IT  A Y +D E V  +                   
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIYKFDGEKVVDQFISLINPERPIQPFVVGLT 54

Query: 52  --------------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWI 94
                          +   +++   D   + VAHN+ F+  + +   K LG +   K   
Sbjct: 55  GINNEMLRNAPKFYEVAKRIVEITTD--CIIVAHNAKFDYRILRTEFKRLGFEFQRKSL- 111

Query: 95  CTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           CT  L++         SL     AL                A+             T+ +
Sbjct: 112 CTVELSKKLIPDMPSYSLGKLVRALG---IPLSDRHRANGDAQATVKLFKMLLAKDTKKD 168

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211
            ++         + D +    L     P   G   L   D  I   G            +
Sbjct: 169 ILKDNVRQEPKRQLDSKLVYILDDL--PAITGIYYLHDEDGEIIYIGK----------SK 216

Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271
            I +   +   +       + +                        E T   +++     
Sbjct: 217 NIKKRINQHFTNDHARAREMQKEVASVSY-----------------ESTGNELIALLREN 259

Query: 272 QLAKDL-ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317
           Q  K+       A         + L      DG +   +    A++ 
Sbjct: 260 QEIKNNKPKYNRALKKHI--FTHGLYHYTDKDGYINLKISKARATKN 304


>gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302]
 gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302]
          Length = 162

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 38/142 (26%), Gaps = 25/142 (17%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVW-AYAEQAVITLCAYA-WDDEPVKL------------W 45
           M     ID ET + +      V         I    Y+    EP                
Sbjct: 1   MKDFAAIDFETANNERTSVCSVGLVVIRDGEIADRFYSLIHPEPDYYTYWNTRVHGLTQA 60

Query: 46  DRTEQSAMPSDLLQ---YLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           D       P    +    + D  +  VAHN  F+    K   +   +D P   + CT   
Sbjct: 61  DTNHAPIFPEVWRKVESLIVD--LPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLAQ 118

Query: 100 ARTNGL--PSSLKNACLALNFS 119
           +R        +L        + 
Sbjct: 119 SRRVWPQGHHNLNIIAARCGYD 140


>gi|262212297|gb|ACY35765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 13/139 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKV--FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482
               R  GK +   L Y GG         AS      +      K       +       
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEVRGKIMQGLSGFAD----L 121

Query: 483 LWMQDQYPEFAVKDKLIGT 501
                +  +  V   L G 
Sbjct: 122 NAAIQERAKSGVLKGLDGR 140


>gi|21356549|ref|NP_650075.1| CG6744 [Drosophila melanogaster]
 gi|10726453|gb|AAF54639.2| CG6744 [Drosophila melanogaster]
 gi|19528113|gb|AAL90171.1| AT25352p [Drosophila melanogaster]
          Length = 583

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 46/187 (24%), Gaps = 35/187 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  D E      +   G         + L   +       L+       +P DL + L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHRGLCALFRLCHMKQIPQDLRELL 127

Query: 62  RDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            D++V+ V         + +      G+ +           A T      L+  C+    
Sbjct: 128 EDDSVIKVGVAPQE---DAMKLSHDYGVGV-----------ASTLD----LRFLCVMAGH 169

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK                 C+            +Y   D      ++++L 
Sbjct: 170 KP----EGLGKLSKTHLNYTLDKHWRLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLC 225

Query: 179 PLSDGER 185
                + 
Sbjct: 226 RDLQPKH 232


>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU144]
 gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU045]
 gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU028]
          Length = 902

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 17/147 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNG 104
           + +  D+ Q ++D   + VAHN  F+    KK      I    KR + T  L   A    
Sbjct: 72  NEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLELFKIAFPTD 129

Query: 105 LPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
               L     + +                 K +I  F K           +  ++     
Sbjct: 130 KSYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEK-FEQLHLDTQKQLYYLSKNLK 188

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGER 185
           +  Y           ++   P +  E+
Sbjct: 189 YDLYHILFEMV--RNYQTKPPNNQFEQ 213


>gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
          Length = 177

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVW-AYAEQAVIT--LCA-----------YAWDDEPVKLWDRT 48
            + ID ET          V     +   I   L             +  +   +   D  
Sbjct: 7   YVAIDFETADSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRFSPFCVNVHGIHWSDVK 66

Query: 49  EQSAMPSDLLQ---YLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR- 101
           +  A     ++   +L     +  AHN+ F+R +        G+  PS  ++CT  LAR 
Sbjct: 67  DAPAFREFWIENAGFLEGADFL-AAHNASFDRSVLGACCTMAGLPAPSLPFVCTVELARN 125

Query: 102 -TNGLPSSLKNACLALNFS 119
             N  P+ L + C  L   
Sbjct: 126 QWNLRPTKLPDVCRHLGLD 144


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1454

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 20/138 (14%)

Query: 6   IDIETR----SPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----------VKLWDRTEQ 50
            D+ET     S   + ++G        +I   +   + E            +   D  + 
Sbjct: 439 FDLETTGLSSSSNKIIEIGAVKIRNGKIIDTFSSFVNPETDIPEHITELTGITTTDIADA 498

Query: 51  SAMPSDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP 106
             + + L Q++    + + VAHN+ F+        + L I+   K +I T  +AR     
Sbjct: 499 PTIAAVLPQFVEFCASAILVAHNADFDMGFILHNTRDLAIEFN-KTYIDTVSMARILLPN 557

Query: 107 SSLKNACLALNFSEHLTK 124
                     N  +   K
Sbjct: 558 LGNAKLSNIANKLKVSLK 575


>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
 gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
          Length = 233

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     +         E   I L                       A+   
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSK--- 91
               +   D+     + ++ +Q++       + HN+ F+        K +  +   +   
Sbjct: 58  GISTEFLQDKPLFQDIVTEFIQFVEGSE--LIIHNAPFDVGFLNSELKHVKWNKTLEDYC 115

Query: 92  RWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
           R + T +LAR    G  +SL   C          ++
Sbjct: 116 RILDTLILAREKHPGQRNSLDALCKRYEIDHFNREL 151


>gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608]
 gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608]
          Length = 163

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 23/137 (16%)

Query: 5   FIDIET--RSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKL-WDR----------TEQ 50
            ID ET       +  VGV        I    Y+    EP    W            T+ 
Sbjct: 6   AIDFETANFERCSVCSVGV-VIVRGGEIVDTFYSLIQPEPNYYHWRCVQVHGLTCADTDD 64

Query: 51  SAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA--RTN 103
           + + S++ + +    E +  VAHN+ F++   K    T  +D P   +  T   A  R  
Sbjct: 65  APVFSEVWKVIEPMIEGLPLVAHNAPFDKGCLKAAFYTYQMDYPDYEFFDTLKAARRRLP 124

Query: 104 GLP-SSLKNACLALNFS 119
            LP   L+       + 
Sbjct: 125 DLPDHQLQTVAAECGYD 141


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 10/145 (6%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTS-VLARTNGLP 106
             +    L+++  +  + VAHN+ F+        + LG+       I T  +        
Sbjct: 478 EEVLPTFLEFI--KGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARYFYNNT 535

Query: 107 SSLKNACLALNFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEY 162
           +  KN               +    KAL   F                  + +  +  ++
Sbjct: 536 NKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAEVFLNMLQDF 595

Query: 163 CKRDVEATRELFKRLIPLSDGERDL 187
            K ++ +  EL   L         +
Sbjct: 596 YKEEIYSYFELQASLDMNEVWRHPI 620


>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
 gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
          Length = 911

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 74/304 (24%), Gaps = 54/304 (17%)

Query: 1   MSKLFI-DIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQ 50
           M+   I DIET    P    + + G   + E   I    +A    P +         T  
Sbjct: 1   MTTYAIVDIETTGTNPKEDRIFQFG-CVFVENGEIVG-RFATMIHPGRSISPQIQHLTHT 58

Query: 51  SAMPSDLLQYLRD---------ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTS 97
           +        Y  D            + VAHN  F+        ++     +  K    T 
Sbjct: 59  TNKDVRHSPYFEDVAPTIYELLSGTVFVAHNIHFDYRFLNAELERCGCERLQLKGI-DTV 117

Query: 98  VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
            LA+          L +   +L  +         +   A               +     
Sbjct: 118 ELAQILFPTEISFRLSDLSESLGLAHE-------RPHQADSDAEVTAQLFIALEQRLASL 170

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
                 E  +     T +  + +       +      + I      +    +        
Sbjct: 171 PLCTIKELSRLSKTLTMQTGEFIAKYVQYSKLPNQFPELIEIEKIALQKQHLA------- 223

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274
                    +   T       +   A + ++     ++     +  + +I  H       
Sbjct: 224 ---------LFDYTLQESNYPKSKQAKQKWV--KGKLEYRASQQSLMNAIYKHYTEETPP 272

Query: 275 KDLI 278
           KDLI
Sbjct: 273 KDLI 276


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 55  SDLLQYLRDE--TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---P 106
             +   L +     + VAHN+ F+R   +   + +G+       +CT  L+R        
Sbjct: 80  EAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRVGLAFDPD-VLCTVRLSRALFPAEKR 138

Query: 107 SSLKNACLALNF 118
             L         
Sbjct: 139 HGLDALVERHTL 150


>gi|262212309|gb|ACY35771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  G+ +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGEGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGLADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTNGLP 106
             +    ++++ D T+  VAHN+ F+    ++     +G D      I T  +AR     
Sbjct: 486 EEVLPKFMEFVGDSTM--VAHNAPFDMGFIRRDVKKFMGYDYKP-AVIDTLQMARDLYPE 542

Query: 107 ---SSLKNACLALNFSEHL 122
                LKN    L  S   
Sbjct: 543 LKAYGLKNLNKVLGLSLDN 561


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVITLCAY------AWDDEPVKLWDRTEQ----S 51
            DIET    P    + ++G        VI   +       +  +E  KL   T+      
Sbjct: 438 FDIETTGFGPKNCRIIEIGAVKVMGGKVIDKFSAFVNPKQSIPEEITKLTSITQDMVINE 497

Query: 52  AMPSDLLQYLRD--ETVMCVAHNSLFERI-LFKKTLGIDIPSK-RWICTSVLARTNGLP- 106
                +L    +  +    VAHN+ F+   +F+    + +        T  ++R      
Sbjct: 498 PEIDVILPAFLEFCKGCFLVAHNASFDTSFIFENMKRLGLNEDFTIADTVTISRVLLPGL 557

Query: 107 --SSLKNACLALNFS 119
               L      L  +
Sbjct: 558 KNYKLDTVAERLGIT 572


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLARTNGL- 105
             +    ++++ D T+  VAHN+ F+        K+ LG D      I T  +AR     
Sbjct: 490 EEVLPKFMEFVGDATM--VAHNAAFDMGFIRRDVKRLLGYDYTP-AIIDTLQMARDLYPD 546

Query: 106 --PSSLKNACLALNFSEHL 122
                LKN    L  S   
Sbjct: 547 LKGYGLKNLNKVLGLSLES 565


>gi|328872413|gb|EGG20780.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 639

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
              + L   A+ D  V L       A+P  L   + D  ++ V  +   +     K LGI
Sbjct: 181 NDKVALIQIAFKD-EVFLIQCLRLKAIPKSLQLLMADHRILKVGVSIAQDATTIIKHLGI 239

Query: 87  DIPS 90
           ++  
Sbjct: 240 EVKG 243


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 31/118 (26%), Gaps = 19/118 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVITL-CAYAWDDEPVK--LWDRTEQ------ 50
            +  D+ET              A       +        D                    
Sbjct: 21  FVVFDLETTGVSAGEHAITEIGAVKVRGGEVLGEFGTLVDPGSPIPPFISVLTGITDTMV 80

Query: 51  ---SAMPSDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
                + S L  +L   E    VAHN+ F+    K      G   P+   + T VLAR
Sbjct: 81  VAAPKIESVLPSFLEFAEGTTLVAHNAGFDLGFIKAACAAHGYPPPAHPVVDTVVLAR 138


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 31/143 (21%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------- 47
            +  DIET    P    + ++G      + VI   +   + E                  
Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPE----IPIPQKITELTTIT 480

Query: 48  ----TEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVL 99
                    + + L ++L        VAHN+ F+    K+     G++      I T  L
Sbjct: 481 DEMVANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSP-SVIDTLPL 539

Query: 100 ARTNGL---PSSLKNACLALNFS 119
           ART         L N       +
Sbjct: 540 ARTLLPELRGYGLANLVKYFGIT 562


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 48/230 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNF---SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                +     L+     L     S +        A + + C    +       +A   +
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCVAIEEEGKRKVNKAMLDE 186

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
                             +++ +  +    +      + +N  G  +D+ 
Sbjct: 187 T----------------AVYEAVKEILACNKRNVEWLRCMN-VGSYLDIK 219


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 55  SDLLQYLRDE--TVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGL---P 106
             +   L +     + VAHN+ F+R   +   +  G+       +CT  L+R        
Sbjct: 92  EAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRAGLAFDPD-VLCTVRLSRALFPAEKR 150

Query: 107 SSLKNACLALNF 118
             L         
Sbjct: 151 HGLDALVERHTL 162


>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
 gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
          Length = 252

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 33/154 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLL- 58
            ++ +D ET    P  K+G     E   + L    +  ++  V +    +      D+  
Sbjct: 19  RQIVLDTETTGIDP--KLG-HRIIEIGCVELINRRFTGNNFHVYINPERDIEDEAIDVHG 75

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERIL-------FKKTLGIDIPSKRW 93
              Q+LRD+                   V HN+ F+           +          + 
Sbjct: 76  ITNQFLRDKPKFHHIAQEFFDYIQGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135

Query: 94  ICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
           + T  +AR        +L   C   N       M
Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTM 169


>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
          Length = 182

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 48/194 (24%)

Query: 2   SKLFIDIETRSPQP-----LPKVGVWAYAEQAVIT---------LCAYAWDDEPVKLW-- 45
             +  D+ET    P     + ++GV  + E   I            A +   + V     
Sbjct: 16  KYVIFDVETTGFNPQHGARIIEIGV-VHIENGNIISEFKSLINCGKAVSKQAQKVNGITN 74

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           +       P ++             VAHN++F+    +  L                   
Sbjct: 75  EMLSGEPTPEEVFPDFLKFISKSTLVAHNAVFDISFLRYEL----------------SRL 118

Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163
           G   S    C  LN S  +    E   L+             +  +  H+          
Sbjct: 119 GFVLSNDYLCT-LNISRKIFPDLENHKLLT-----VAKHILVNLPKNLHL-------HRA 165

Query: 164 KRDVEATRELFKRL 177
             D   T  ++  +
Sbjct: 166 LDDARLTAMIWMEM 179


>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
 gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
          Length = 291

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 41/149 (27%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDLLQ 59
            + +DIET    P             +I L A                     +   + +
Sbjct: 128 YVVVDIETTGLNPNK---------DEIIELAAIRVRGGRETDAFQCLVRCGGELSDAIAK 178

Query: 60  Y--------------LRD---------ETVMCVAHNSLFERILFKKT---LGIDIPSKRW 93
                          L +            + VAHN+ F+    +     L  D     +
Sbjct: 179 LTGLSHSRLMAEGLILENALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY 238

Query: 94  ICTSVLAR---TNGLPSSLKNACLALNFS 119
           + T  LAR          L +    L+  
Sbjct: 239 LDTLALARKKLPQISDHRLSSLAERLHLE 267


>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 205

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP-SKRWICTSVLARTNG---L 105
             + ++   ++ D     VAHN+ F++     +   I +    ++ C+ ++AR       
Sbjct: 75  EEVMAEFAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIARRLIQNAP 132

Query: 106 PSSLKNA 112
              L + 
Sbjct: 133 THKLGDL 139


>gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO]
 gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68]
 gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6]
 gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF]
 gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039]
 gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162]
 gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071]
 gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980]
 gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636]
 gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679]
 gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317]
 gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68]
 gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6]
 gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF]
 gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071]
 gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636]
 gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679]
 gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317]
 gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039]
 gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162]
 gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980]
          Length = 177

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 33/152 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L  V V      ++            E    W        
Sbjct: 1   MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 55

Query: 46  ---DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICT 96
              D       P     +  Y + +  + VAHN+ F+  +    L    +    +  +CT
Sbjct: 56  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 114

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKM 125
              +R          L   C  LN        
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLDHHHD 146


>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
 gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
          Length = 902

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 17/147 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNG 104
           + +  D+ Q ++D   + VAHN  F+    KK      I    KR + T  L   A    
Sbjct: 72  NEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLELFKIAFPTD 129

Query: 105 LPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
               L     + +                 K +I  F K           +  ++     
Sbjct: 130 KSYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEK-FEQLHLDTQKQLYYLSKNLK 188

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGER 185
           +  Y           ++   P +  E+
Sbjct: 189 YDLYHILFEMV--RNYQTKPPNNQFEQ 213


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 27/144 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQ----- 50
            +  D+ET         + + G      +  +       + +   P  + + T       
Sbjct: 397 FVVFDLETTGLSNTRDEIIEFGGVKIKNREEVGRLQMFINPKRTIPAHISNLTHITQNDV 456

Query: 51  ------SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
                      +LL+++ D   + VAHN+ F+        +  G D  +   I T  L+ 
Sbjct: 457 DCAKPIEDALDELLEFIGDS--ILVAHNATFDVGFMNAACRKTGRDELTNPVIDTLPLSY 514

Query: 102 TNGL----PSSLKNACLALNFSEH 121
                     +L + C     S  
Sbjct: 515 AMLPDEQKRFNLGSVCRHYRVSYD 538


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 39/148 (26%)

Query: 3   KLFIDIETRSPQP------------------------LPKVGVWAYAEQAVITLCAYAWD 38
            + +D ET    P                        L K       + + IT       
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEML 417

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
           +             +  + L +L D   + VAHN+ F+        KK +G+D   + +I
Sbjct: 418 ENK------RSIEEVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYI 468

Query: 95  CTSVLARTNGL--PSSLKNACLALNFSE 120
            T  LA++       SL +    L    
Sbjct: 469 DTLALAKSLLKLRSYSLDSVVEKLGLGP 496


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 41/145 (28%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQSAMPSDLLQYLR- 62
           +DIET   +   +                Y +D   V  +            D + +L  
Sbjct: 5   LDIETTGGKLNEESITEIAI---------YRFDGNEVTDRFISLINPEKKIDDFVAHLTG 55

Query: 63  ----------------------DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
                                  +  + VAHN+ F+  + +   + LG D       CT 
Sbjct: 56  ISNKMVRNAPKFYEVAKRIIEITDGCIIVAHNAAFDYRILRLEFRRLGFDFHRNTI-CTV 114

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
            +++         SL     +L   
Sbjct: 115 EMSQRLLPQESSYSLGKLTRSLGIP 139


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 41/152 (26%), Gaps = 43/152 (28%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCA---YAWDDEPVKLWDR-----TEQSAMPS 55
           +F D+ET    P          E   I       Y       K  D      T+  A   
Sbjct: 436 VFFDLETTGLSP----------ELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLKAFTQ 485

Query: 56  DL----LQYLRDE-----------TVMC----VAHNSLFERILFKKT---LGIDIPSKRW 93
            L     + L D+            ++     VAHN+ F+          LG        
Sbjct: 486 KLTNITEKMLEDKPSIEQAFKQINEIIKDAILVAHNANFDFTFLSYWSEKLGYSKLENTI 545

Query: 94  ICTSVLARTNGL---PSSLKNACLALNFSEHL 122
           I T  ++R          L +    +N S   
Sbjct: 546 IDTLTISRIIYPDLKSHRLGSLAKRVNISYDP 577


>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 195

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 8/77 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL-- 105
             +    L++L    +  +  N  F+    K         +     I T  +A+      
Sbjct: 81  EKVLPKFLEFLDTPFI--IGQNISFDYSFIKYFSDLYNFRLKEFIIIDTINIAKKIAPNL 138

Query: 106 -PSSLKNACLALNFSEH 121
              +L N          
Sbjct: 139 KRYNLDNLITYFGIENI 155


>gi|262212243|gb|ACY35738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +  + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEGVVNGDIHAALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
          Length = 233

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     +         E   I L                       A+   
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSK--- 91
               +   D+     + ++ +Q++       + HN+ F+        K +  +   +   
Sbjct: 58  GISTEFLQDKPLFQDIVTEFIQFVEGSE--LIIHNAPFDVGFLNSELKHVKWNKTLEDYC 115

Query: 92  RWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
           R + T +LAR    G  +SL   C          ++
Sbjct: 116 RILDTLILAREKHPGQRNSLDALCKRYEIDHFNREL 151


>gi|83644404|ref|YP_432839.1| DNA polymerase II [Hahella chejuensis KCTC 2396]
 gi|83632447|gb|ABC28414.1| DNA polymerase II [Hahella chejuensis KCTC 2396]
          Length = 839

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 55/215 (25%), Gaps = 45/215 (20%)

Query: 2   SKLFIDIETR------SPQPLPKVG----VWAYAEQAVITLCAYAWDDEPVKLWDRTEQS 51
             L +DIET           L        V A A Q  + +     +D P  L    ++S
Sbjct: 175 KVLSLDIETSMDGAQLYSIGLAATSYGADVGAGAMQHRVFMVGENAEDSPDYLVYCADES 234

Query: 52  AMPSDLLQYLR--DETVMCVAHN-SLFERILFKK-------------------------- 82
            +    +++    D  ++ +  N   F+    +K                          
Sbjct: 235 EVFRRFVEWFDGFDPDIL-IGWNVINFDLRFLQKKADELNFPFHPGRGGAAMDWRQSRSD 293

Query: 83  --TLGIDIPSKRW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137
                + IP +     I T   A  N    SL+     L     L    + +        
Sbjct: 294 DQHFTLCIPGRVVLDGIDTLKSATYNFESFSLEYVAQHLLGRGKLIHDPDNRGDEITHLF 353

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172
                        +    W++F      +    R 
Sbjct: 354 LHDKPRLAAYNLEDCQLVWEIFQHALLIEFAVERA 388


>gi|261344774|ref|ZP_05972418.1| hypothetical protein PROVRUST_06038 [Providencia rustigianii DSM
           4541]
 gi|282567218|gb|EFB72753.1| DNA polymerase II [Providencia rustigianii DSM 4541]
          Length = 783

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAMPSDLL 58
           + +DIET     L  +G+    +     +     D  P      +L   T +  +   L 
Sbjct: 155 VSLDIETSQHGELYSIGLSGCNDN---VVFMLGPDQGPALNTDHRLVYVTSRPQLLEKLN 211

Query: 59  QYLR--DETVMCVAHN-SLFERILFKKT---LGIDI 88
           ++++  D   + +  N   F+  + +K     GI +
Sbjct: 212 EWIQHYDPDAI-IGWNLIQFDLQVLQKHAERYGIPL 246


>gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1]
 gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNVFG-EL-PQPLIDTQILAAFCGRPIS 111


>gi|262212339|gb|ACY35786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
               R  GK +   L Y GG       A        +  Q +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212327|gb|ACY35780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
               R  GK +   L Y GG       A        +  Q +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212255|gb|ACY35744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466
               R  GK +   L Y GG       A        +  Q +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|218780285|ref|YP_002431603.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761669|gb|ACL04135.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1002

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 45/178 (25%), Gaps = 29/178 (16%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +DIETR           AY        C+  +D    K  +  +       L Q+L    
Sbjct: 832 LDIETRRSAAEVGGWGAAYRMG---VSCSVLYDSRDDKFHEYFQDDT--DALAQHLTQLD 886

Query: 66  VMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLA-R-TNGLPSSLKNACLALNFSEHL 122
            + V  N   F+  +       D  +   +   +       G   SL             
Sbjct: 887 -LVVGFNIIRFDYQVLSAHTAFDFSAIPTLD-MLQKIYGVLGYRISLDKLA--------- 935

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                              +      +           +YC+ DV  TR+LF      
Sbjct: 936 ----------QHTLGTQKTADGLQALKWWKQGKIDKILKYCRADVAITRDLFLYGREH 983


>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU121]
          Length = 902

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 37/146 (25%), Gaps = 27/146 (18%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNG 104
             +  D+ Q L+D   + VAHN  F+    KK      I    KR + T  L   A    
Sbjct: 72  KEIAQDIYQQLQD--CVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVMDTLELFKIAFPTD 129

Query: 105 LPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158
               L     A +                   +I  F K                     
Sbjct: 130 KSYQLSELAEAHDIPLNNAHRADEDATTTAHLMIKAFEK-------------FEQLPLDT 176

Query: 159 FGEYCKRDVEATRELFKRLIPLSDGE 184
             +      +   +L+  L  +    
Sbjct: 177 LKQLYYLSKDLKYDLYHILFEMVRQH 202


>gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
 gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
          Length = 269

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 45/167 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK------------------ 43
             +  D ET         G + Y    +I + A   ++  +K                  
Sbjct: 77  RYIIFDTETT--------GFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQA 128

Query: 44  LWDRTEQSA-----------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK- 91
           + D T  +            + SD L ++ D   + VAHN+ F+       L     ++ 
Sbjct: 129 VCDLTGITDDMVADKCGICSVLSDFLDFIGDS--VLVAHNAEFDLAFLNIKLNWYTQTEI 186

Query: 92  --RWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIA 133
               I T  L R      L   L          E       G +L+ 
Sbjct: 187 YNPVIDTYKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMT 233


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 26/143 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  D+ET         + + G        VI       +         T          
Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMV 462

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLAR 101
                  A+   ++++  D   + VAHN+ F+     + L  +   +     I +  LAR
Sbjct: 463 RNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALAR 520

Query: 102 TNGLP---SSLKNACLALNFSEH 121
               P     L N C +   +  
Sbjct: 521 AILKPMKSYRLGNVCRSYRVNYD 543


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 45  WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVL 99
            D       P      L         VAHN+ F+  +  K   +  I  P   + CT  +
Sbjct: 59  VDVRNAKTFPELWYDSLSAFFPVDGVVAHNARFDLSVLTKTLVSYDIPSPKMSYACTLDM 118

Query: 100 ARTNGL--PSSLKNACLALNFS 119
           ++         L + C AL   
Sbjct: 119 SKKIDFIGGGKLPHVCEALGIE 140


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 26/140 (18%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAE---QAVITLCAYAWDD---EPVKLW------D 46
            + +D+ET   +P    + ++G         QA ++    + D      +         D
Sbjct: 38  FVVVDLETTGTRPGGDEITEIGAVRIRGGEVQAELSTF-VSIDGVLPGHISRLTGIAPED 96

Query: 47  RTEQSAMPSDLLQYLR-DETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA-R 101
                ++   +  +L      + VAHN+ F+           G   P    +CT  LA R
Sbjct: 97  LVGAPSLGEVMATFLEFSRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVCTLALARR 156

Query: 102 TNG----LPSSLKNACLALN 117
                      L      L 
Sbjct: 157 VLHRGETRGHRLGVLAAHLG 176


>gi|326623067|gb|EGE29412.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL     +    + P    +  +  A   +     + +    E    L
Sbjct: 117 ----MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 172

Query: 178 IPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               D  R +    Q I        D+    +L+       + L +  ++       +  
Sbjct: 173 PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRIRKARERDMAVN 232

Query: 237 QT 238
             
Sbjct: 233 FV 234


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 44/145 (30%), Gaps = 41/145 (28%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQSAMPSDL------ 57
           IDIET       K+G  A  E A+     Y +D + V  +            D       
Sbjct: 5   IDIETTG----GKMGEEAITEIAI-----YRFDGQKVTDRFISLINPEKKIDDFVVRLTG 55

Query: 58  ----------------LQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
                            + +   E  + VAHN+ F+  +     + LG D       CT 
Sbjct: 56  ISNKTVRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTL-CTV 114

Query: 98  VLARTN---GLPSSLKNACLALNFS 119
            +++         SL     +L   
Sbjct: 115 EMSQRLLPDEPSYSLGKLTRSLGIP 139


>gi|170095531|ref|XP_001878986.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646290|gb|EDR10536.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 51/193 (26%), Gaps = 35/193 (18%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRT--------EQSAM 53
            L +D+E      L             I+L    +   E V L D T             
Sbjct: 34  TLAVDLE---GIDL--------CRHGKISLVQIMSSVSEVVWLVDVTTLGSQAFDHVDPY 82

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              L   L D  +  V ++   +        G+++         +L     +  SL+   
Sbjct: 83  GRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLMG--VYDLQLLE--LAVRHSLRRQT 138

Query: 114 LALNFSEHLTKMEE--------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
             LN      K            K   +R  K   +               ++   YC +
Sbjct: 139 RLLNGLSKSIKSYLTPPVEWEPVKEAGSRLFKP--EFGGSYSVFEERPLDPRIVA-YCAQ 195

Query: 166 DVEATRELFKRLI 178
           DV     L + L 
Sbjct: 196 DVTLLFALEETLR 208


>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
 gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
          Length = 383

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 44/178 (24%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           + +D E     T                   + L    +D E V L D    T+ S    
Sbjct: 33  VALDTEFMRISTYY---------------PKLGLIQL-YDGERVSLIDPLSITDFSP--- 73

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL- 114
             ++ LRD+ V  + H    + ++F +    D   +  + T ++AR  G  ++       
Sbjct: 74  -FVELLRDQQVTKILHACNEDLLVFLQEF--DALPQLMMDTQIMARFLGF-ANSAGLAKL 129

Query: 115 ---ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
               L           G        +                  W L   Y K  +E 
Sbjct: 130 VLHYLGIEMDK-----GATRTNWLKRPLSPVQLQ----YAAGDVWYLLPVYQKMQIEL 178


>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 45/160 (28%), Gaps = 47/160 (29%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---------------------DE 40
            ++ +D ET     + K+GV  Y     I     A +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVH-YEGH-RIIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVKLWDRTEQS---------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDI 88
                                +  + L+++R      V HN+ F+        + L  DI
Sbjct: 61  EAYGVHGISDDFLLDKPTFADIADEFLEFIR--GAELVIHNAPFDIGFMDYEFRKLNRDI 118

Query: 89  PSK----RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
           P      +   + V+AR    G  +SL   C         
Sbjct: 119 PKTETFCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTK 158


>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 228

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 44/153 (28%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60
             +F D ET    P     +   A            D          E   +P  +++  
Sbjct: 6   KIVFFDTETTGLDPEKDQIIELAAALVTENGIELKID----AFCKLPEGEKIPEKIVELT 61

Query: 61  ------LRDETV-------------------MCVAHNSLFERIL----FKKTLGIDIPSK 91
                 L D+ +                   + VAHN  F+ +     FK+   +    K
Sbjct: 62  HITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPK 121

Query: 92  -RWICTSV-----LARTNGLPSSLKNACLALNF 118
            R + +        A     P  L NA      
Sbjct: 122 LRALDSLTVYKDRAAY----PHKLANAIEHYGL 150


>gi|320085676|emb|CBY95454.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL     +    + P    +  +  A   +     + +    E    L
Sbjct: 117 ----MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 172

Query: 178 IPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               D  R +    Q I        D+    +L+       + L +  ++       +  
Sbjct: 173 PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRIRKARERDMAVN 232

Query: 237 QT 238
             
Sbjct: 233 FV 234


>gi|225012125|ref|ZP_03702562.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
 gi|225003680|gb|EEG41653.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
          Length = 238

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 56/229 (24%), Gaps = 60/229 (26%)

Query: 2   SKLFIDIETRSPQPLPKVGV----------------------------WAYAEQAVITLC 33
             LF+DIET    P  +                                 +AE   I   
Sbjct: 9   KILFLDIETVPLYPNFEDAPEVEQRYFEEKTAYQRKENFSPQEFYNRAGIWAEFGKIVCI 68

Query: 34  AYAWDDEPVKLWDR----TEQSA--MPSDLL----QYLRDETVMCVAHNSL-FERILFKK 82
           +  +     K  D      +     + ++      QY      +   HN+  F+     +
Sbjct: 69  SVGYFGPQKKSRDFRLKTFKGEEATLLNEFKVLVEQYFNSPKHLFCGHNAKEFDFPFIAR 128

Query: 83  TLGID----------IPSKRWI----CTSVLARTNGLPS--SLKNACLALNFSEHLTKME 126
            + I              K W      T  L R        SLK     LN         
Sbjct: 129 RMLIHQISIPKSLQLFNKKPWEVPHLDTLHLWRLGDYKHYTSLKLMAYVLNIPS-PKDDI 187

Query: 127 EGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKR---DVEATR 171
           +G  +   F K    +     C +     A  +     +    D E T 
Sbjct: 188 DGSQVADVFYKEKDINRIAVYCEKDVVTVAQIILKLRNENLLTDKEITF 236


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 67/228 (29%), Gaps = 44/228 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 19  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 77

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P+ + I T  LA
Sbjct: 78  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFLA 135

Query: 101 --RT-NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                +     L+     L               I      ++D             A +
Sbjct: 136 KKYMKHAPNHKLETLKRMLG--------------IRLSSHNALDDCITCAAVYQKCAAIE 181

Query: 158 LFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
             G             +++ +  +    +      + +N  G  +D+ 
Sbjct: 182 EEGNRKVNKAVLDETAVYEAVKEMLARNKRNVEWLRCMN-VGSYLDIK 228


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 28/145 (19%)

Query: 2   SKLF-----IDIETRS---PQPLPKVGVWAYAEQAVITL-----------CAYAWDDEPV 42
            +L       DIET                  E   I              +Y   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  KLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              +  +      ++L    +     + VAHN+ F+        +  G+   +K+   T 
Sbjct: 472 ITNELIKDKPTIEEVLPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
           +LAR          L      L   
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2]
 gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2]
          Length = 382

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A   E   L D        +   + + +E VM V H    +  +        
Sbjct: 37  PKLCVVQVA-SPEEAVLIDALADGLDLAPFYRLMANERVMKVFHAGRQDIEIIWHQA--R 93

Query: 88  IPSKRWICTSVLARTNGLPSS 108
           +       T V A   G   S
Sbjct: 94  LIPHPVFDTQVAAMVLGYGDS 114


>gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 173

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75
           L K     +     I             + D  +   +   +  + +    + +AHN+ F
Sbjct: 33  LIKPESDFFWRNVQIHGI------HEADVADAPKFPDVWQHIEPFFQ-RDRLVIAHNAPF 85

Query: 76  ERILFKK---TLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSEHL 122
           +  + +      GI  P    + T   +           L   C AL+     
Sbjct: 86  DIGVLRNTLAHYGISAPEYLSMDTVNTSQRFYPELPNHKLDTVCQALDIDLQH 138


>gi|124800774|ref|XP_001349559.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
 gi|3845126|gb|AAC71832.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 416

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 18/102 (17%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---PSDL 57
           M  + +DIE        K+G +       I    Y    E + ++D  +   +    + +
Sbjct: 74  MKMIGLDIEGY------KIGKYGIVS---IIQICY----EDIYIFDIYKCDNVYLFINYI 120

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
              L  + ++ V H+   +  +      I +     + T V 
Sbjct: 121 KDILECDDIIKVTHDCREDCSILYNQYNIHLK--NILDTQVA 160


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 28/145 (19%)

Query: 2   SKLF-----IDIETRS---PQPLPKVGVWAYAEQAVITL-----------CAYAWDDEPV 42
            +L       DIET                  E   I              +Y   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  KLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              +  +      ++L    +     + VAHN+ F+        +  G+   +K+   T 
Sbjct: 472 ITNELIKDKPTIEEVLPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
           +LAR          L      L   
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 28/145 (19%)

Query: 2   SKLF-----IDIETRS---PQPLPKVGVWAYAEQAVITL-----------CAYAWDDEPV 42
            +L       DIET                  E   I              +Y   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  KLWDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
              +  +      ++L    +     + VAHN+ F+        +  G+   +K+   T 
Sbjct: 472 ITNELIKDKPTIEEVLPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARTNGL---PSSLKNACLALNFS 119
           +LAR          L      L   
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 26/143 (18%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  D+ET         + + G        VI       +         T          
Sbjct: 408 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMV 467

Query: 50  -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLAR 101
                  A+   ++++  D   + VAHN+ F+     + L  +   +     I +  LAR
Sbjct: 468 RNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALAR 525

Query: 102 TNGLP---SSLKNACLALNFSEH 121
               P     L N C +   +  
Sbjct: 526 AILKPMKSYRLGNVCRSYRVNYD 548


>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
           Corby]
 gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
           Corby]
 gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
          Length = 233

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     +         E   I L                       A+   
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSK--- 91
               +   D+     + ++ +Q++       + HN+ F+        K +  +   +   
Sbjct: 58  GISTEFLQDKPLFQDIVTEFIQFVEGSE--LIIHNAPFDVGFLNSELKHVKWNKTLEDYC 115

Query: 92  RWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
           R + T +LAR    G  +SL   C          ++
Sbjct: 116 RILDTLILAREKHPGQRNSLDALCKRYEIDHFNREL 151


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 65  TVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR---TNGLPSSLKNACLALNF 118
            +  VAHN+ F+     +     GID+P   + C+  LAR          L      L F
Sbjct: 203 DLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVENHKLPTVASHLGF 262

Query: 119 S 119
            
Sbjct: 263 E 263


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 65  TVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR---TNGLPSSLKNACLALNF 118
            +  VAHN+ F+     +     GID+P   + C+  LAR          L      L F
Sbjct: 108 DLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVENHKLPTVASHLGF 167

Query: 119 S 119
            
Sbjct: 168 E 168


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 28/176 (15%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVL---ARTNG 104
           + +  D+   ++D   + VAHN  F+    K       I    K+ + T  L   A    
Sbjct: 72  NEVAEDIYDQIKD--CIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLELFKIAFPTD 129

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L     A +                            +          + F ++  
Sbjct: 130 KSYQLSELAQAHDIPLDK------------------AHRADEDATTTAKLMIKAFKKFES 171

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
             ++  ++L+  L      +    L +    ++   +D D   + +++I +++  L
Sbjct: 172 LPLDTQKQLYY-LSKNLKYDLYNILFEMVRTNQSKPLD-DQFGQFEQIIYRKQVDL 225


>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 918

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 42/155 (27%)

Query: 1   MSKLF--IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPS 55
           M  ++  +D+ET                Q    L      D  +      D      +  
Sbjct: 1   MKPIYAVVDLETTGTDS-----TIDRIIQFGCVLVQ----DGKIINRFAADINPDRRISK 51

Query: 56  DLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL-GIDIPSKR 92
            +               Y  D            + VAHN  F+            +P   
Sbjct: 52  QIQRLTHITNQQVSKAPYFEDIADTIYNLLSNTIFVAHNIYFDYHFLSNEFVRCGLPPLS 111

Query: 93  W--ICTSVLARTNGLPSS---LKNACLALNFSEHL 122
              I T  L++      S   L +   ++ F    
Sbjct: 112 IPGIDTVELSQVFLPTESSFRLGDLADSIGFRHDN 146


>gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 235

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 31/147 (21%)

Query: 2   SKLFIDIETRSPQP------------------LPKVGVWAYAE-QAVITLCAYAWDD-EP 41
            ++ +D ET   +P                  + +     Y +    I   A A      
Sbjct: 7   RQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPDREIDEGALAVHGISN 66

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWI 94
             L D+   + +  + L+++R      V HN+ F+       L       G        +
Sbjct: 67  EFLADKPRFADVVDEFLEFIR--GAELVIHNAPFDVGFLDHELKLLDAARGQVTDYSSIL 124

Query: 95  CTSVLARTNGLPS--SLKNACLALNFS 119
            T  LAR        SL   C      
Sbjct: 125 DTLDLARRMHPGQRNSLDALCKRYQID 151


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  +   +      ++ D   + VAHN+ F+        K +     +   I T  LAR 
Sbjct: 476 DAPDVEEVLEKFYHWIDD--CVLVAHNATFDIGFLNAGFKKINRGKVTNPVIDTLELARY 533

Query: 103 NGL---PSSLKNACLALNFS 119
                    L   C   N  
Sbjct: 534 LYPELKNHRLNTLCKKFNIE 553


>gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 375

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL     +    + P    +  +  A   +     + +    E    L
Sbjct: 121 ----MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 176

Query: 178 IPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               D  R +    Q I        D+    +L+       + L +  ++       +  
Sbjct: 177 PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRIRKARERDMAVN 236

Query: 237 QT 238
             
Sbjct: 237 FV 238


>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
          Length = 243

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPSKRWIC 95
            L+D+ E   +  + L+++  +    VAHN+ F+            K +G      +   
Sbjct: 76  FLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITD 133

Query: 96  TSVLARTN--GLPSSLKNACLALNFS 119
           T  +A+    G  ++L   C      
Sbjct: 134 TLAMAKKIFPGKRNNLDVLCERYGID 159


>gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6]
 gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6]
          Length = 390

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 63/226 (27%), Gaps = 10/226 (4%)

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L D +VM V H    +  +F   LG        + T ++A   G    L     AL  
Sbjct: 87  ELLNDASVMKVLHACGEDLEVFHNALGAI--PVPMVDTQIMAAFLG--HGLSTGFAALVE 142

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                ++++ ++      +   D          H     L   Y     +     + +  
Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVH----YLLPLYEILLEKVMEAGWWQ-A 197

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238
              + E       +T N     +D+    +L+       K L    ++       +    
Sbjct: 198 AQQESELQASKRVKTPNADNAYLDIKGAWQLKPRELAILKPLATWRMQEAIRRDLALNFV 257

Query: 239 YALRMYLFL-ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           +     L +   G+      E     + S          ++ +   
Sbjct: 258 FKEHDLLTVARLGLTSFKRMEEEGMDVRSVQRHGNRIAAMVKSARE 303


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 67/228 (29%), Gaps = 44/228 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P+ + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                +     L+     L               I      ++D             A +
Sbjct: 127 KKYMKHAPNHKLETLKRMLG--------------IRLSSHNALDDCITCAAVYQKCAAIE 172

Query: 158 LFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204
             G             +++ +  +    +      + +N  G  +D+ 
Sbjct: 173 EEGNRKVNKAVLDETAVYEAVKEMLARNKRNVEWLRCMN-VGSYLDIK 219


>gi|262212307|gb|ACY35770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +     Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCPIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
 gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
           SAW760]
          Length = 517

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 35/141 (24%), Gaps = 21/141 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +  +  V H   F+ I      G+ +     I +                  AL    
Sbjct: 255 FTNPNIEKVFHGCDFDMIWLSYNFGLYV--VNCIDS-------------GQCARALKLQH 299

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K      L+ ++C    D               +   EY + D      +  +L   
Sbjct: 300 FSLKY-----LLQKYCNVDADKKYQLADWRLRPLT-KEMIEYARGDTHYLLYIIDQLRNE 353

Query: 181 SDGERDLWLLDQTINDRGYRI 201
                 L  +    N+   R+
Sbjct: 354 CIDVGILEEVLNKSNELCLRL 374


>gi|262342137|gb|ACY54579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+        +  + NG    +        
Sbjct: 7   PSDSRFRELSLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  AL Y  G +                 +  +    + +    
Sbjct: 61  VNADKI-GISRKLVKTVTYALLYGAGDEKIGHSCDKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTA 502
               L    +  E      L G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 50  QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG 104
                  +L    D     + VAHN+ F+           G+       + T  +AR   
Sbjct: 592 PYPKIDVILPQFLDFVGDAVLVAHNASFDVGFISHFAEEQGLHFNPT-VLDTVTIARLLL 650

Query: 105 LPSS---LKNACLALNFS 119
              +   L     ALN S
Sbjct: 651 PNLNRFKLDTVAKALNIS 668


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPS--KRWICTSVLARTNGL--- 105
            +  +L+ ++ D+  + VAHN+ F+     + L  I +       + T  LAR       
Sbjct: 466 EVAQELVDFIGDK--VLVAHNATFDYNFLNEELKRIGMAPLTNPVVDTLDLARALHSDRR 523

Query: 106 PSSLKNACLALNFSEH 121
              L N       +  
Sbjct: 524 SYRLGNIARHYRITYD 539


>gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 79/286 (27%), Gaps = 29/286 (10%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +    ++       + L    +D E V L D T      S  +  L +
Sbjct: 36  IALDTE-----FVRIKTLY-----PQLGLIQL-YDGERVSLIDPTTIQDF-SPFIALLAN 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC-LALNFSE 120
             V+ V H    +  +F+ +          + T ++A   G P+S  L            
Sbjct: 84  TAVLKVLHACSEDLEVFQHSFNQ--LPTPMLDTQIMANFLGFPNSTGLATLVQHYFQLEI 141

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G +      +   D+             W L   Y +      +  ++     
Sbjct: 142 DK-----GASRTDWLARPLSDNQLI----YAAADVWYLLPLYQRMQEALAQTRWQE-AAQ 191

Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240
            D E  L   +Q  +     + +    +L        K L +   +       +      
Sbjct: 192 QDCEALLLKREQHKDPELAYLGIPNAWRLTPSELMRLKLLAKWRQEEATKRDLALNFV-V 250

Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
              +L+ +        +   L   LSH  +    K ++        
Sbjct: 251 RAEHLWQV-AKHNPKHTSELLALGLSHHEVRIHGKKILHLIGQLKR 295


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 16/99 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--- 86
           D  PV +   T            +   +   L   + + VAHN+ F+             
Sbjct: 63  DPGPVHVHGLTADRLAGAPAFEEIAPQVGALL--SSRVLVAHNAQFDYDFLAHEFAQVRS 120

Query: 87  DIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHL 122
             P  R +CT  L R  G       L          +  
Sbjct: 121 WAPVSRRLCTLALNRLVGPATPDLKLGTLAAHYGVRQEK 159


>gi|225620435|ref|YP_002721692.1| exonuclease [Brachyspira hyodysenteriae WA1]
 gi|225215254|gb|ACN83988.1| exonuclease [Brachyspira hyodysenteriae WA1]
          Length = 287

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 47/168 (27%), Gaps = 27/168 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +F+DIET         G+        +  C   +D + +K++          + L Y+
Sbjct: 88  KTVFLDIETT--------GIKPSKAHVTVIGC---YDGKEMKVFVHGRNE---HEFLDYI 133

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           ++ +++   + S F+    ++     I   +            L   LK+        + 
Sbjct: 134 KNYSIIVTFNGSCFDIPFLERYFATTIKCAQI----------DLRFVLKDLGYTGGLKKI 183

Query: 122 LTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
              +    G  +       +               A      Y   D 
Sbjct: 184 EQDVGISRGDDMEG-VNGYTAVLLWNYYQDTKDETAIDSLIHYNLLDT 230


>gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1]
 gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1]
          Length = 215

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 34/131 (25%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-------------VKLWDR 47
           M  L  D E+       K           +   A+   D                 +   
Sbjct: 1   MKYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIYPDGFVIPS 60

Query: 48  TE-------QSAMPSDLLQYLR-----DETVM----CVAHNSLFERILF-----KKTLGI 86
           +              +    L       E++      V HN  F+R +      +  L  
Sbjct: 61  SSMEIHGITNERAREEGKPVLEVLSVFSESIKQADVLVGHNVSFDRSIVTSEYSRAKLNA 120

Query: 87  DIPSKRWICTS 97
            I    + CT 
Sbjct: 121 PILKLPYHCTM 131


>gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
 gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
          Length = 173

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 16  LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75
           L K     +     I             + D  +   +   +  + +    + +AHN+ F
Sbjct: 33  LIKPESDFFWRNVQIHGI------HEADVADAPKFPDVWQHIEPFFQ-RDRLVIAHNAPF 85

Query: 76  ERILFKK---TLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSEHL 122
           +  + +      GI  P    + T   +           L   C AL+     
Sbjct: 86  DIGVLRNTLAHYGISAPEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQH 138


>gi|23009273|ref|ZP_00050383.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 10/118 (8%)

Query: 65  TVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNF 118
             + +AHN+ F+  +        G  +P     CT  +AR          L      L  
Sbjct: 20  GRLLLAHNAGFDMGVLAASLTAWGEPVPEMMGHCTLQIARRIFPDPAGHGLAKVAARLGI 79

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  + G+      C     +   +    +     +  G    +     R  F R
Sbjct: 80  RFEHH--DAGEDA--YACAEIALAALRETGATDIADLARGLGLTPIQAAATPRRDFTR 133


>gi|331647298|ref|ZP_08348392.1| ribonuclease D [Escherichia coli M605]
 gi|330911610|gb|EGH40120.1| ribonuclease D [Escherichia coli AA86]
 gi|331044081|gb|EGI16217.1| ribonuclease D [Escherichia coli M605]
          Length = 371

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD ++    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 63  KAILRDPSITKFLHAGSEDLEVFLNIFG-EL-PQPLIDTQILAAFCGRPMS 111


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 33/143 (23%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----------------VKLWDRTE-QS 51
           ET     +   G+ A     +I L A                         + + T    
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 52  AMPSD---LLQYLRD-----ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVL 99
            M  D   ++  +RD        + VAHN+ F+        KK L ++      I T  L
Sbjct: 478 DMLQDAPDVVDVIRDFRVRIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 100 ARTNGL---PSSLKNACLALNFS 119
            R          L   C   +  
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 22/142 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVITLC--AYAWDDEP---------VKLWDRT 48
            +  D+ET     +    +   A   +   I     ++A   EP             D  
Sbjct: 416 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDTYESFADPKEPLSATIIELTGITDDMV 475

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
           + +  P+++L+  R+       VAHN+ F+        K LG    +   I T  L R  
Sbjct: 476 QGAPEPAEVLKQFREFAGNATLVAHNASFDIGFLNVGYKKLGFSEVTNPVIDTLELGRFL 535

Query: 104 GL---PSSLKNACLALNFSEHL 122
                   L   C   +     
Sbjct: 536 YPELKNHRLNTLCKKFDIELVS 557


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 16/96 (16%)

Query: 38  DDEPVKLWDRTEQ--------SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGI 86
           D  PV +   T            +   +   L     + VAHN+ F+          +  
Sbjct: 76  DPGPVHIHGLTPARLAGAPTFEEIAPQVGALL--SGRVLVAHNAQFDYDFLAHEFAHVRS 133

Query: 87  DIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119
            +P  R +CT  L R  G       L          
Sbjct: 134 WVPVSRRLCTLALNRLVGSATPDLKLGTLAAHYGVR 169


>gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1]
 gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 40/148 (27%), Gaps = 36/148 (24%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---------------- 45
             + +D ET    P  K G     E   + L      DE                     
Sbjct: 3   RLIVLDTETTGFDP--KEG-HRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGI 59

Query: 46  ---DRTEQSAMPSDLLQYL----RDETVMCVAHNSLFERILFKKTL-----GIDIPSKRW 93
              D            ++L     D     V HN+ F+       L      + +P +R 
Sbjct: 60  TDADVANSPKFKEIYHEFLAFIGEDS---LVIHNAEFDMRFLNAELTRLNKRLVMPMERA 116

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFS 119
           I T  LAR    G   +L   C  L   
Sbjct: 117 IDTIPLARRKFPGSTVNLDALCKRLGVD 144


>gi|322709296|gb|EFZ00872.1| DNA polymerase gamma [Metarhizium anisopliae ARSEF 23]
          Length = 1090

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 10/193 (5%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   +  T                    +++ + A  G   V AD+   E 
Sbjct: 616 PQVIPMGTITRRAVENT-----WLTASNAKKNRVGSELKAMVKAPKGYCFVGADVDSEEL 670

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 671 WIAS-LVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAGILGITRNDAKVFNYGRIYG 729

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G K   T+       L +      ++  + + +  +++   + ++       +  +   
Sbjct: 730 AGLKFAATLLRQFNPSLSERQTMEVASRLYANTKGTKTNRKVIHNKPFWRGGTESFVFNK 789

Query: 503 CELVKKAWRAKHQ 515
            E   +  R +  
Sbjct: 790 LEEFAEQERPRTP 802


>gi|296420113|ref|XP_002839625.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635808|emb|CAZ83816.1| unnamed protein product [Tuber melanosporum]
          Length = 1038

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 10/193 (5%)

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
           PQ +P    +   + +T                    +++ +IA  G   V AD+   E 
Sbjct: 570 PQLIPMGTITRRAVERT-----WLTASNAKKHRLGSELKAKVIAPQGYAFVGADVDSQEL 624

Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQ 442
            + + + G+        N          KA  T +   +       R   KV      Y 
Sbjct: 625 WIAS-LLGDAQFKIHGGNALGFMTLEGTKANGTDLHSKTANILGISRDNAKVFNYGRIYG 683

Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
            G     T+       +        +   +   +  ++    +          +  +   
Sbjct: 684 AGVGFASTLLRAFNPAITDAKCAKIAADLYSKTKGHQTLRKSLSPTRFWHGGTESFVFNT 743

Query: 503 CELVKKAWRAKHQ 515
            E      R +  
Sbjct: 744 LEKFADQERPRTP 756


>gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 174

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 39/124 (31%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPV----------------KLW 45
            + +D+ET    PL             I            +                 + 
Sbjct: 10  YIVVDLETTGLDPLQGH---------EIIEIGVTEIKKGDITLNYSRLIKPKGIISSFIT 60

Query: 46  DRTE-------QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRW 93
           + T              ++L   R+     + +AHN+ F+       L   G++ P K +
Sbjct: 61  NLTHISNEMVEGEKTLEEVLPKFREYIGDSVLIAHNAKFDIPFLNYYLEKMGLE-PIKNY 119

Query: 94  ICTS 97
           ICT 
Sbjct: 120 ICTL 123


>gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 375

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL     +    + P    +  +  A   +     + +    E    L
Sbjct: 121 ----MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 176

Query: 178 IPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               D  R +    Q I        D+    +L+       + L +  ++       +  
Sbjct: 177 PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRIRKARERDMAVN 236

Query: 237 QT 238
             
Sbjct: 237 FV 238


>gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 375

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL     +    + P    +  +  A   +     + +    E    L
Sbjct: 121 ----MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 176

Query: 178 IPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               D  R +    Q I        D+    +L+       + L +  ++       +  
Sbjct: 177 PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRIRKARERDMAVN 236

Query: 237 QT 238
             
Sbjct: 237 FV 238


>gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638]
 gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638]
          Length = 384

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 63/217 (29%), Gaps = 52/217 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55
           + +D E     T                   + L    +D + V L D    T+ S M  
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKNVSLIDPLGITDWSPM-- 75

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
              + L +  +    H    +  +F  T GI    +  I T +LA  +G P S   A   
Sbjct: 76  --RELLLNTAITKYLHAGSEDLEVFLNTFGI--MPEPLIDTQILAAFSGRPLSWGFAA-- 129

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                 + +   G AL                T        +   +Y   DV     +  
Sbjct: 130 ------MVEEYTGIALDKSES----------RTDWLARPLTERQLDYAAADVFYLLPIAG 173

Query: 176 RLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLK 208
           +L+  ++     +  L     T   R   +D     +
Sbjct: 174 QLMKEAEAAGWLDAALNECRMTQQRRQETVDPKDAWR 210


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 24/174 (13%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVLARTNGLPS 107
           + +  D+   ++D   + VAHN  F+    K       I    K+ + T           
Sbjct: 72  NEVAEDIYDQIKD--CIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTL---------- 119

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-WQLFGEYCKRD 166
                      +    K  +   L          +   D       +   + F ++    
Sbjct: 120 ------ELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATTTAKLMIKAFKKFESLP 173

Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           ++  ++L+  L      +    L +    ++   +D D   + +++I +++  L
Sbjct: 174 LDTQKQLYY-LSKNLKYDLYNILFEMVRTNQSKPLD-DQFGQFEQIIYRKQVDL 225


>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
 gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudomonas entomophila L48]
          Length = 251

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 12/89 (13%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGIDIPSK-R 92
              L  +     +  +  +++       V HN+ F+                 DI     
Sbjct: 67  DAFLVGKPRFGDVAQEFFEFIE--GATLVIHNAAFDVGFINNEFALLGQHDRADISQHCS 124

Query: 93  WICT--SVLARTNGLPSSLKNACLALNFS 119
            + T     +R  G  +SL   C      
Sbjct: 125 ILDTLMMARSRHPGQRNSLDALCKRYGID 153


>gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 291

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 24/116 (20%)

Query: 4   LFIDIETRS---------PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--RTEQSA 52
           +++D ET              L K  V     + +  + + ++ ++P        T+ + 
Sbjct: 48  VWLDCETTGFQAGHDKIIELGLTKGYVDPITGELISLVASVSFYEDPGFPLPEIITQITG 107

Query: 53  MPSD-----------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
           +  +           + ++  D+ +  VAHN+ F+R  F+    + +   RW C+ 
Sbjct: 108 ITDEMVSGRTIDGVQVREWFTDDPI-VVAHNASFDRPFFESRFPM-LDQLRWACSM 161


>gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 178

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-------AYAEQAVITLC--AYAWDDEPVKLWDRTEQS 51
           M+ + +D ET +  P     +           ++          A+D + VK+ D T + 
Sbjct: 2   MNFVAMDFETANQHPASACSLALVLVRESKIIDRFYTV-INPQMAFDAQQVKVHDITAED 60

Query: 52  ----AMPSDLLQY---LRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                  +++      L    ++  AHN+ F+  + K++    GI  P    + +  ++R
Sbjct: 61  VAGAPTMAEVWPKIQPLFQPGMLVAAHNARFDCNVMKQSLARYGIAEPHYLVLDSLKVSR 120

Query: 102 TNGLP---SSLKNACLALNFS 119
                     L      L   
Sbjct: 121 ELEPGLDNYQLNTVSDLLGVE 141


>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
 gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
          Length = 930

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+  ++ Q L  +    VAHN  F+    K  L   G  +P    + T  L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELNEAGFRLPDCEVLDTVELSRIVYPGF 130

Query: 106 -PSSLKNACLALNFSEHL 122
               L      L      
Sbjct: 131 EGYKLTELSEELQLKHEN 148


>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
 gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
          Length = 244

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 17/106 (16%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---K 82
           E   I   +         L DR   + +  + ++++R      V HN+ F+        +
Sbjct: 61  EAFQIHGIS------DEFLIDRPAYADIVDEFIEFIR--GAELVIHNASFDIGFMDYEFR 112

Query: 83  TLGIDIPSK----RWICTSVLARTN--GLPSSLKNACLALNFSEHL 122
            L  DIP      +   +  +AR    G  ++L   C         
Sbjct: 113 MLNRDIPKTETFCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSK 158


>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
          Length = 337

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 37  WDDEPVKLWDRT----EQSA----MPSDLLQYLRDETVMCVAHNSLFERILFKK---TLG 85
            D  P  +   T    E       +  +L++ LR      VAHN+ F+          +G
Sbjct: 67  VDPGPTHVHGLTAEMLEGQPCFADVVDELIEVLR--GRTLVAHNAGFDYSFLAAEAELVG 124

Query: 86  IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHL 122
            ++P    +CT  LAR   L      L+        ++  
Sbjct: 125 AELPIDTAMCTVELARRLELGTENLRLETLAAHWGVTQMK 164


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 430 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 488

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 489 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 548

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 549 FLYPHFKNHRLNTLTKKFNI 568


>gi|264678170|ref|YP_003278077.1| DNA polymerase B region [Comamonas testosteroni CNB-2]
 gi|262208683|gb|ACY32781.1| DNA polymerase B region [Comamonas testosteroni CNB-2]
          Length = 672

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 65/219 (29%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--------KLWDRTEQSA 52
           +  + +DIET   Q L  + +   AE+ V  L      + P         +L   + + A
Sbjct: 36  LKVVSLDIETSQHQDLYSIALDGMAERVVFML-----GEAPAKPLRTPGFELIHCSTRKA 90

Query: 53  MPSDLLQYLR--DETVMCVAHN-SLFERILFKK---------TLGIDIPSKRWICT---- 96
           M   L  +    D  V+ +  N   F+  + +K          LG +     W  T    
Sbjct: 91  MIDRLNDWFARNDPDVI-IGWNVIQFDLRVLQKTADECATPLLLGRERKPIAWR-THPGK 148

Query: 97  -------S-----------VLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCK 137
                              + A     PS SL+N    L        + EGK +   + K
Sbjct: 149 QGYLFAPMPGRVVVDGIEALRAAVWSFPSFSLENVAQEL--------LGEGKDIGDEYDK 200

Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
            +     Y   +            Y  RD E    +F++
Sbjct: 201 MAEIERRYQLDKPA-------LAAYNIRDCELVLRIFEK 232


>gi|322366583|gb|ADW95369.1| Putative DNA/RNA polymorease [Staphylococcus cohnii]
          Length = 366

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY-----DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654
           VQ ++  +    +    K         I++ +HD I+ E  D       ++  LM   
Sbjct: 288 VQTVASYVFKHILLEVYKAQCEQMNFKIIMPIHDAIMIECEDEEI--AQSVAQLMKNT 343


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 43/151 (28%)

Query: 1   MSKLFIDIETR----SPQPLPKVGV-----WAYAEQAVITLCAYAWDDEPVKLWDRTEQS 51
           M    +DIET     S   + ++ +      +  +     +        P +        
Sbjct: 1   MLYAVVDIETTGGHASGNGITEISILVHNGHSIVQNYETLI-------NPGQYIP-AHIE 52

Query: 52  -----------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91
                             + +++ Q L D+  + VAHN  F+    +  L   G ++  +
Sbjct: 53  ALTGISNEMVETAPSFNQVAAEVYQLLHDK--IFVAHNVNFDFSFIRHQLGVCGYELSCR 110

Query: 92  RWICTSVLARTNGLPS---SLKNACLALNFS 119
           +  CT  ++R         SL   C ALN S
Sbjct: 111 KL-CTVRMSRKIIPGHRSYSLGKLCAALNIS 140


>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 416

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 29/184 (15%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73
               +   + Y  +A +             L D    + +   + + L   T   + H +
Sbjct: 46  VDAERASAYRYGHRAYLV--QLRRPGAGTFLIDPLPFANL-RPVHEAL--STAEWIVHAA 100

Query: 74  LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALI 132
             +     +   + +   R   T + AR  G P   L      L                
Sbjct: 101 AQDLPCLAE---LGLRPARLFDTELAARLAGYPRVGLAAMVEEL---------------- 141

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192
               + + D    D +R    ++W     Y   DVE   EL + L      +  L    +
Sbjct: 142 -LGFRLNKDHARVDWSRRPLPESW---LRYAALDVEVLVELREILHTELQRQGKLRWAVE 197

Query: 193 TIND 196
               
Sbjct: 198 EFEH 201


>gi|262212283|gb|ACY35758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 38/139 (27%), Gaps = 13/139 (9%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWI-AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423
           RS    S+    V +D +G+E R L    +  D    A         T  A+ + T    
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALAEIYGTDRKP 72

Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHH 482
                   GK +   L Y GG           G      S+   +            +  
Sbjct: 73  --------GKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADL 121

Query: 483 LWMQDQYPEFAVKDKLIGT 501
                +  +  V   L G 
Sbjct: 122 NAAIQERAKPGVLKGLDGR 140


>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
          Length = 918

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 42/155 (27%)

Query: 1   MSKLF--IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPS 55
           M  ++  +D+ET                Q    L      D  +      D      +  
Sbjct: 1   MKPIYAVVDLETTGTDS-----TIDRIIQFGCVLVQ----DGKIINRFAADINPDRRISK 51

Query: 56  DLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL-GIDIPSKR 92
            +               Y  D            + VAHN  F+            +P   
Sbjct: 52  QIQRLTHITNQQVSKAPYFEDIADTIYNLLSNTIFVAHNIYFDYHFLSNEFVRCGLPPLS 111

Query: 93  W--ICTSVLARTNGLPSS---LKNACLALNFSEHL 122
              I T  LA+      S   L +   ++ F    
Sbjct: 112 IPGIDTVELAQVFLPTESSFRLGDLADSIGFRHDN 146


>gi|327392695|dbj|BAK10117.1| DNA polymerase II PolB [Pantoea ananatis AJ13355]
          Length = 803

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAMPS 55
           +  + +DIET     L  +G+    ++ V  L      +        +L     +  +  
Sbjct: 169 LKWVSLDIETTQHGELYCIGLEGCGQRQVFML---GPPNGDASELDFELIYLESRPQLLE 225

Query: 56  DLLQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
            L ++    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 226 ALNRWFADNDPDVI-IGWNVVQFDLRVLQKHADRYGIPLRLGR 267


>gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
 gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
          Length = 177

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 58  LQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL---PSSLKN 111
           ++ L    ++ VAHN+ F+  + KK+     I  P    I T   +R          L  
Sbjct: 73  IRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRALMPNLKNYRLDT 132

Query: 112 ACLALNFS 119
               LN  
Sbjct: 133 VSNQLNID 140


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
 gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
          Length = 760

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 14/114 (12%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E  S +                 L   +  ++   L D      +   L     +
Sbjct: 35  FAVDTEQHSIRSFL----------GYTALMQISTQNDD-YLIDTIALHDVMGILRPVFAN 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116
            ++  + H +  + +  ++     I       T+    T   P  SL       
Sbjct: 84  SSICKIFHGADNDVLWLQR--DFHIYVVNMFDTAKACETLSKPQKSLAYLLEVY 135


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 26/137 (18%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTE----------Q 50
            DIET         + ++G     +   I    +   +      +  TE           
Sbjct: 425 FDIETTGLNSHTNEIIEIGAVK-IKSGRIVDRYSQLINPGRPIPYHITEITSITDEQVAN 483

Query: 51  SAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTNG 104
               ++++    D     + VAHN+ F+    K+     L ID      I T  +AR   
Sbjct: 484 EPKINEVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLF 542

Query: 105 L---PSSLKNACLALNF 118
                  L +    L  
Sbjct: 543 PDLKKYGLGDLNKTLGL 559


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYHNH-ELVDQFVSYVNPERPIPNRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPFFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|258404214|ref|YP_003196956.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257796441|gb|ACV67378.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 962

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 27/172 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D+ET   +   +VG W  A+       + A   +         +      L+++L  + 
Sbjct: 791 FDLET--QRSAQEVGGWNRAKD---MGISCAVVYDSALDTYVEYEEKDIPQLVEHL-HKC 844

Query: 66  VMCVAHNSL-FERILFKKTLGIDIPSKRWICTS-VLARTNGLPSSLKNACLALNFSEHLT 123
            + +  N L F+  +       D  +   +    V+ +  G   SL              
Sbjct: 845 DLVIGFNILRFDYQVLSGYSRADFQALPSLDLLRVVHKQLGYRLSLDKLA---------- 894

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                        +    +      +       +   +YC++DV  TR+L++
Sbjct: 895 ---------QATLQAQKTANGLQALQWWKEGRIRDIIDYCRQDVAVTRDLYR 937


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 426 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 484

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 485 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 544

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 545 FLYPHFKNHRLNTLTKKFNI 564


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes str. 4b F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLP-- 106
               ++L Y++D+  + VAHN+ F+        + +G    +   I T  ++R       
Sbjct: 461 EAIDEILDYIKDD--VLVAHNATFDYYFLNEELRRIGRKPLTNVVIDTLDMSRAVLPDRR 518

Query: 107 -SSLKNACLALNFS 119
              L N     + +
Sbjct: 519 AYRLGNLSRYYHVN 532


>gi|315926553|gb|EFV05934.1| hypothetical protein CSQ_1891 [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 276

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 16/187 (8%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILF-KKTLGIDIPSKRWICTSVLART 102
            D   +  M  +   ++ +     V+ N   F+  +   + L  ++ +  ++ T   +  
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDT--QSDK 148

Query: 103 NGLPSS----LK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156
                +    LK  +   +L  +    K++   +++    K   D    +  +  +    
Sbjct: 149 WNNYKTRFSELKHCDLLESLGSNGRGIKLDTLCSMVGLPGKY--DVHGDEVMKLFYENKL 206

Query: 157 QLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGY--RIDLDLVLKLQEL 212
           +   EYC+ DV  T  LF +  LI  +  E D       + D     + D        + 
Sbjct: 207 EKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLCAKKSDRSYTEVFAKA 266

Query: 213 IAQERKK 219
              E  K
Sbjct: 267 CESEISK 273


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 68  CVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNF 118
            VAHN+ F+    ++         D      + T  L+          +L   C  LN 
Sbjct: 356 IVAHNAPFDMAFLRRQCRDQDYAFD---NPILDTVHLSAVVFGGSAEHTLDALCDRLNV 411


>gi|291616243|ref|YP_003518985.1| PolB [Pantoea ananatis LMG 20103]
 gi|291151273|gb|ADD75857.1| PolB [Pantoea ananatis LMG 20103]
          Length = 803

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAMPS 55
           +  + +DIET     L  +G+    ++ V  L      +        +L     +  +  
Sbjct: 169 LKWVSLDIETTQHGELYCIGLEGCGQRQVFML---GPPNGDASELDFELIYLESRPQLLE 225

Query: 56  DLLQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
            L ++    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 226 ALNRWFADNDPDVI-IGWNVVQFDLRVLQKHADRYGIPLRLGR 267


>gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 43/163 (26%), Gaps = 51/163 (31%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQPFEVRLRAPQSLDSNSVKIHQIRHS 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIP----------- 89
           D  +       L Q L        V ++  +++ +     K+ LG  +P           
Sbjct: 90  DLADGIDEKQALTQLLAFVGNRPLVGYHIRYDKKILDLACKRHLGFPLPNPLIEVSQIYH 149

Query: 90  -------SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
                     +              SL+  C  L+        
Sbjct: 150 DKLEKHLPNAYFD-----------LSLEAICKHLDLPMQSKHD 181


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 25/139 (17%)

Query: 6   IDIETRS-------PQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRT-------- 48
           ID+ET            L  +G+ A    EQ+V++L     D  P  +   T        
Sbjct: 20  IDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPTHVHGLTAAMLEDQP 79

Query: 49  EQSAMPSDLLQYLRDETVMCVAHNSLFER---ILFKKTLGIDIPSKRWICTSVLARTNGL 105
           + + +  D+++ LR      VAHN  F+        +  GI++P    +CT  LAR   L
Sbjct: 80  QFADIAGDVVEVLR--GRTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELARRLDL 137

Query: 106 P---SSLKNACLALNFSEH 121
                 L+        ++ 
Sbjct: 138 GIDNLRLETLAAHWGVTQQ 156


>gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSV 98
             + D        + +++   D     VAHN+ F+  + ++     G+  P+  + CT  
Sbjct: 63  ADVADAPSWEQAHARIVE-FADGG-PLVAHNAAFDMGVLRQACGHTGLSHPAWEYACTLA 120

Query: 99  LAR--TNGLP-SSLKNACLALNFSEHL 122
           L+R   +GLP   L   C  +      
Sbjct: 121 LSRRTWSGLPDHKLPTVCAHIGHRVTH 147


>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 323

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAY----AWDDEPVKLWDRT---- 48
           M  L +D+ET         + + G   +       +       ++ ++P +         
Sbjct: 47  MRGLVVDVETTGLDTARDVIIEFGAVPFDFDGEGRVYTVHPPLSYFEDPGRPIPAEASAI 106

Query: 49  --------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
                       +    +    D+ V+ +AHN+ F+R + ++ L
Sbjct: 107 TGITDDDVRGKRIDDAAVLAALDQAVLVIAHNAGFDRRMLERRL 150


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 22/139 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-----------LCAYAWDDEPVKLWDRT 48
            +  D+ET     +    +   A   +   I              +    +      D  
Sbjct: 420 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSITTIELTGITDDML 479

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
           + +    ++L+   D     + VAHN+ F+          LG+   +   I T  LAR  
Sbjct: 480 KDAPDVEEVLRQFYDWMGDSILVAHNASFDIGFLNVGFTKLGLGKVTNPVIDTLELARFL 539

Query: 104 GL---PSSLKNACLALNFS 119
                   L   C   +  
Sbjct: 540 YPELKNHRLNTLCKKFDIE 558


>gi|164655431|ref|XP_001728845.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
 gi|159102731|gb|EDP41631.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
          Length = 1518

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 6/181 (3%)

Query: 330  LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
            LP+      +  + I+                  ++S + AS G  +V AD+   E  + 
Sbjct: 914  LPQVITMGTVTRRAIEKT-WLTASNAKKNRIGSELKSMVKASPGWSIVGADVDSEELWIC 972

Query: 390  AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
            + + G+       A          +KA  T +   +       R   KV   +  Y  G 
Sbjct: 973  S-VMGDAQFGIHGATAIGWMTLEGSKAQGTDLHSKTASILGTSRDQAKVFNYSRIYGAGI 1031

Query: 446  KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505
            +    +       +     + ++   +   +   +       +   +   +  +    E 
Sbjct: 1032 RHAMQLLLKANPSMPVDEASRRAKQLYAATKGQNTRSQKYFGRRFWYGGTESFVFNKLEE 1091

Query: 506  V 506
            +
Sbjct: 1092 I 1092


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 42/149 (28%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWD--RTEQSAMPSDLLQ 59
            +F+D+ET            A A+   IT         E ++ WD       ++P  + +
Sbjct: 32  IVFVDLETT----------GADAQHDRITEIGVVEVGPEGIQEWDTLLDPGVSIPPFIQR 81

Query: 60  Y--LRDETV--------------------MCVAHNSLFERILFKKTL---GIDIPSKRWI 94
              + DETV                    + VAHN+ F+    K      G+       +
Sbjct: 82  LTGITDETVQGQPTFASIAEALAERLQGRLFVAHNARFDYGFLKNEFRRAGLTFR-ADVL 140

Query: 95  CTSVLARTNGLP---SSLKNACLALNFSE 120
           CT  L+R+         L       +   
Sbjct: 141 CTVRLSRSLFPSAARHGLDAIIARFDLQP 169


>gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 177

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLW-----DR 47
           M+ + +D ET +  P     +         I      +      +D   +++      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 48  TEQSAMPSDLLQY--LRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR 101
                M     +   L    ++  AHNS F+  +      +   I+ P    I T   ++
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNSRFDTNVMRQSLARY-NIEEPHYLVIDTLATSK 119

Query: 102 TNG---LPSSLKNACLALNFS 119
                     L     ALN  
Sbjct: 120 LFEPELPNHKLDTVSDALNVE 140


>gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
          Length = 184

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIP-SKRWICTSVLARTNG---L 105
             + ++   ++ D     VAHN+ F++     +   I +    ++ C+ ++AR       
Sbjct: 54  EEVMAEFAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIARRLIQNAP 111

Query: 106 PSSLKNA 112
              L + 
Sbjct: 112 THKLGDL 118


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 16/98 (16%)

Query: 38  DDEPVKLWDRT--------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--- 86
           D  PVK+   T            +   +   L+D   + VAHN+ F+             
Sbjct: 64  DPGPVKVHGLTVERLQGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARART 121

Query: 87  DIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEH 121
            +P  + +CT  L R    P+    L          + 
Sbjct: 122 WLPVSQRLCTLALNRQVDPPTGDMKLGTLAAHYGIPQQ 159


>gi|296330200|ref|ZP_06872681.1| putative hydrolase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676196|ref|YP_003867868.1| putative hydrolase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152468|gb|EFG93336.1| putative hydrolase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414440|gb|ADM39559.1| putative hydrolase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 286

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 64/244 (26%), Gaps = 39/244 (15%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55
           M  + ID++       S            A  A I                         
Sbjct: 1   MKLIAIDLDGTLLNKESVISAENRAAIKRAVDAGIL---VTICTGRATF----------- 46

Query: 56  DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
           D+   L D  +  +A N            G  +  K +    +++RT     + K     
Sbjct: 47  DVKALLEDLDIPIIAAN------------GGTVHDKGYR---LISRTLMDQEAGKAIADY 91

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L       ++     L++ F   +      D  ++ +                 T+    
Sbjct: 92  LLSKNIYFEVYTDDHLLSPFDGEAKLHAELDILKSANPNE----KTDELWQGAMTQFKQF 147

Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
            + P+   E      +       +  D+D + + +E + +  KKL +         I  +
Sbjct: 148 GIKPIPHIESVFDGSENIYKLLCFSFDMDKLRQAKEEL-KHHKKLAQTSSGKHIIEILPA 206

Query: 236 RQTY 239
               
Sbjct: 207 SSGK 210


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
          Length = 1442

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSS 108
            +  +LL Y+ D   + VAHN+ F+        + L     +   I T  +AR      S
Sbjct: 460 EVVDELLAYIGDA--VLVAHNASFDFPFLNEELRRLSRKPLTNPVIDTLDMARAILSDRS 517

Query: 109 ---LKNACLALNFS 119
              L+        +
Sbjct: 518 RFALEYVSNHYKLN 531


>gi|73661352|ref|YP_300133.1| hypothetical protein SSP0043 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493867|dbj|BAE17188.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 366

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 602 VQAISRDILCEGMKNATKNGY-----DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651
           VQ ++  I    +    K         I+L +HD I+ E  D    +  ++  LM
Sbjct: 288 VQTVASYIFKHILLEVYKAQCTQKSFQIILPIHDAIMIECDDEE--TAQSVAQLM 340


>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Anoxybacillus flavithermus WK1]
 gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
           [Anoxybacillus flavithermus WK1]
          Length = 880

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICT 96
           +   + D      + + L++  + E    VAHN  F+    ++     GI  P+ R + T
Sbjct: 61  DHAMVHDAPPFQHIAAMLVE--QWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCRLLDT 118

Query: 97  SVLARTN---GLPSSLKNACLALNFSEH 121
             LAR          L +   AL+F+  
Sbjct: 119 VELARFLMPTQSSYKLNHLAEALSFAHD 146


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
            +  DIET    S    + ++G     +   I   +++   +P                 
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVK-LKDGEIVD-SFSTFVDPKVNIPYKITELTSITQN 492

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                    ++L    +     + VAHN+ F+    KK L   G  +     + T  LAR
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLAR 551

Query: 102 TNGLPS---SLKNACLALNFS 119
                     L      L  S
Sbjct: 552 YLYPDLKKVKLNLVAKHLGIS 572


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 6   IDIETRS----PQPLPKVGVWAYAEQAVITL-CAYAWDDEPVKLWD-------------R 47
           +D+ET         + ++G         +        +  P +                 
Sbjct: 42  VDLETTGGAPGDSGITEIGAVKVRA-GELVGEFQSLVN--PAEPIPPFIAVLTGITDLMV 98

Query: 48  TEQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR 101
                + S L  +L      + VAHN+ F+    K      G D P    + T++LAR
Sbjct: 99  ASSPRIGSVLPAFLEFARGCVLVAHNAPFDVGFLKHDSQVHGYDWPDFPVVDTALLAR 156


>gi|262212369|gb|ACY35801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 9/145 (6%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R+  + S G+ +V ADL+GIE R+L+          A  +             +
Sbjct: 7   PSDPRFRALSLPSPGQVMVAADLSGIELRMLSHF-------PAKYDDGRYAGILLNGDIH 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477
                     R + K +  A  Y  G +    +          +        +  +  + 
Sbjct: 60  QVNADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDG 119

Query: 478 AESHHLWMQDQYPEFAVKDKLIGTA 502
                L       E      + G  
Sbjct: 120 -LDKLLAAIKTASERGFIKAIDGRK 143


>gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12]
 gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15]
 gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1]
 gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12]
 gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15]
 gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1]
          Length = 177

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 43/152 (28%), Gaps = 33/152 (21%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLW-------- 45
           M+ + +D ET      S   L  V V      ++            E    W        
Sbjct: 1   MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 55

Query: 46  ---DRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRW--ICT 96
              D       P     +  Y + + ++ VAHN+ F+  +    L    +    +  +CT
Sbjct: 56  HQEDVRNAPKFPEVWQTIQPYFQ-KNLLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 114

Query: 97  SVLARTN---GLPSSLKNACLALNFSEHLTKM 125
              +R          L   C  LN        
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLDHHHD 146


>gi|311748418|ref|ZP_07722203.1| hypothetical protein ALPR1_19118 [Algoriphagus sp. PR1]
 gi|126576930|gb|EAZ81178.1| hypothetical protein ALPR1_19118 [Algoriphagus sp. PR1]
          Length = 249

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 67/246 (27%), Gaps = 74/246 (30%)

Query: 3   KLFIDIETRSPQP-------------LPKVGV------------------WAYAEQAVIT 31
            LF+DIET S                + K  +                    +AE   + 
Sbjct: 11  ILFLDIETASLSDKFENLPPRLQDEWIKKEKLIQTENGKIEPGALYFDRAGIHAEFGQVI 70

Query: 32  LCAYAWDDEP---------VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFK 81
                +              K++   ++  +  D    L  +  +  AHN   F+     
Sbjct: 71  CVGVGYFQWKKKDKKLIFRSKVFSNEDERELLLDFNTLLEKKKWILCAHNGKEFDFPYLC 130

Query: 82  KTL---GIDIP-------SKRWI----CTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125
           + +   G+ +P        K W      T  L +         L+               
Sbjct: 131 RRMLVQGVTLPEPLQIAGKKPWEVRHLDTLELWKFGDYKHYTRLELLAAVFGIPT-SKDD 189

Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGE 184
            +G  +   F      +                  +YC++DVE T  ++  + P   + E
Sbjct: 190 LDGSQVNTTFHLEKNINRI---------------KKYCRKDVEVTARVYLAMHPQLDEME 234

Query: 185 RDLWLL 190
            ++  L
Sbjct: 235 LEMVHL 240


>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
 gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
          Length = 532

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 31/148 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            +L +D ET    P          E  ++ +    +  E + ++   ++      +    
Sbjct: 307 RQLIMDTETTGLDPQKG---DRVIEVGIVEMIGRKFTGEKLHVYINPQRGMDEEVIRIHG 363

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTL-GIDI----PSKRWIC 95
               +L D+                   +AHN+ F+          + +       +   
Sbjct: 364 ISEAFLTDKPTFDQVAQSLYDFMDGAEIIAHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423

Query: 96  TSVLA--RTNGLPSSLKNACLALNFSEH 121
           + V+A  +  G  ++L      L+  + 
Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQ 451


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|297619064|ref|YP_003707169.1| hypothetical protein Mvol_0536 [Methanococcus voltae A3]
 gi|297378041|gb|ADI36196.1| hypothetical protein Mvol_0536 [Methanococcus voltae A3]
          Length = 720

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 48/186 (25%), Gaps = 13/186 (6%)

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
             LN      K  E K L     K     P       N       F  Y K+D +   + 
Sbjct: 88  EDLNEENDKYKDNENKLLEKYLKKEY---PVIRYKNPNFKNKDYTFKLY-KKDEDTKNDT 143

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233
                   + + ++  +   I + G  I    +        ++   +++   ++    + 
Sbjct: 144 ENLYFNELEYKLNIDKIYLNIYNTGVGILSIHLSNYDYSEKEDIININDYGRRIYPQFLG 203

Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293
              +   +   L     +          K + +   I+ L  +          S      
Sbjct: 204 LLDKQIYVNENLCENNILKGPKT-----KFLANLIKISSLNPENFEEY----NSITKSTE 254

Query: 294 TLSEAV 299
            L   V
Sbjct: 255 GLQNPV 260


>gi|116283963|gb|AAH61472.1| Polg protein [Mus musculus]
          Length = 1013

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 5/156 (3%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           LP+   +  I  + ++      + A P       +++ + A  G  LV AD+   E  + 
Sbjct: 819 LPQVVTAGTITRRAVEPTWLTASNARP-DRVGSELKAMVQAPPGYVLVGADVDSQELWIA 877

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
           A +    +                 K+  T +   +       R   K+      Y  G 
Sbjct: 878 AVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQ 937

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481
              + +       L +     K+   +   +    +
Sbjct: 938 SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRY 973


>gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus iners AB-1]
 gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
 gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
          Length = 177

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGV--WAYAEQAVITLC--AYAWDDEPVKLWDRTEQS 51
           M+   +D ET      S   L  V V      +            +D   +K+   T   
Sbjct: 1   MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTV-INPQMPFDKNNIKIHGITAND 59

Query: 52  ----AMPSDLLQ---YLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR 101
                   ++      L    ++ VAHN+ F+  + KK+     I  P    I T   +R
Sbjct: 60  VKDAPTMDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSR 119

Query: 102 TNGL---PSSLKNACLALNFS 119
                     L      LN  
Sbjct: 120 ALMPNLKNYRLDTVSNQLNID 140


>gi|229472323|gb|ACQ72676.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           R     S+    V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RPLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens SM101]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
            +  DIET    S    + ++G     +   I   +++   +P                 
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVK-LKDGEIVD-SFSTFVDPKVNIPYKITELTSITQN 492

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                    ++L    +     + VAHN+ F+    KK L   G  +     + T  LAR
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLAR 551

Query: 102 TNGLPS---SLKNACLALNFS 119
                     L      L  S
Sbjct: 552 YLYPDLKKVKLNLVAKHLGIS 572


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 27/140 (19%)

Query: 6   IDIETRSPQPLPKVGVWAYA---EQAVITL---------------CAYAWDDEPVKLWDR 47
           +D+ET    P+            EQ  +                        +   +   
Sbjct: 8   LDLETTGSNPVLDRITEVAVMRVEQGEVVAKWSRLLNPGQRIPPFIQQLTGIDDAMVAGA 67

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN- 103
                +  +LL  L D  V+ VAHN  F+    K+     G+D+  K   CT  L+R   
Sbjct: 68  PAFGEVLPELLAVL-DGAVL-VAHNVRFDHGFLKQAAAREGVDLRVKTL-CTVRLSRKLY 124

Query: 104 --GLPSSLKNACLALNFSEH 121
                  L            
Sbjct: 125 PQARGHGLDAIMRRHGLHTT 144


>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
 gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
          Length = 180

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVW--AYAEQAVITLC--AYAWDDE----PVKLWDR 47
           M  + +D ET      S   L  V V      +    TL      +D +         D 
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNRVVDSFY-TLINPQMQFDPQNIRIHGITPDM 59

Query: 48  TEQSAMPSDLLQYLR---DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            +       +  +++       +  AHN+ F+  + +      GI  P  + I T   +R
Sbjct: 60  VQDQPTFDRVWPHIQMFYTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPRYQVIDTVKTSR 119

Query: 102 TNGLP---SSLKNACLALNFS 119
                     L     AL   
Sbjct: 120 QFLPKLPNHRLDTVSAALKIP 140


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  DIET         + ++G        ++   +   +      +  TE         
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITNEQV 481

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLART 102
                   ++    D     + VAHN+ F+    K+     L ID      I T  +AR 
Sbjct: 482 ANEPKIDKVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARD 540

Query: 103 NGL---PSSLKNACLALNF 118
                    L +    L  
Sbjct: 541 LFPDLKKYGLGDLNKTLGL 559


>gi|282899917|ref|ZP_06307878.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195187|gb|EFA70123.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 317

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 34/187 (18%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWDRTEQSAMPSD 56
             L++D E                    ++L     +      E   ++D  ++  + + 
Sbjct: 21  KSLWLDTE----------IADWNTPCPRLSLIQVLANPTDLIGEFAYIFDVLDKPDISTY 70

Query: 57  LL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            + Q + D  +  V HN+ F+     K LG +  +K   CT                   
Sbjct: 71  FISQIMVDVQIQKVFHNADFDL----KYLGKN-SAKNVTCTF-------------KVAKK 112

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           +      T   + K L    C  S        +        +   +Y   D      + +
Sbjct: 113 IGHRILQTTNLKLKTLAVELCHFSDVDKEGGASDWGKRPLCEKQLKYAAMDTVYLAAVHR 172

Query: 176 RLIPLSD 182
           RL+ LSD
Sbjct: 173 RLMELSD 179


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
            +  DIET    S    + ++G     +   I   +++   +P                 
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVK-LKDGEIVD-SFSTFVDPKVNIPYKITELTSITQN 492

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                    ++L    +     + VAHN+ F+    KK L   G  +     + T  LAR
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLAR 551

Query: 102 TNGLPS---SLKNACLALNFS 119
                     L      L  S
Sbjct: 552 YLYPDLKKVKLNLVAKHLGIS 572


>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
 gi|187036904|emb|CAP23569.1| CBR-CRN-3 protein [Caenorhabditis briggsae AF16]
          Length = 868

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 41/173 (23%), Gaps = 26/173 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   +  DE   +        +   L +   +  ++ V H S  + +  ++  G+ +   
Sbjct: 311 LIQISTRDEDFIIDPFPMWDRI-GILNEPFTNPNILKVFHGSDNDVLWLQRDFGVHV--V 367

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T V  +    P  SL                                         
Sbjct: 368 NLFDTYVAMKKLKYPKFSLAYLAFR-------FADVVLDKQYQL-------------ADW 407

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRI 201
                      Y + D       +  L       G +DL  +    ND   R+
Sbjct: 408 RARPLRNAMINYAREDTHYLLYSYDMLREQLLQQGHKDLENVYAESNDLCIRV 460


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
          Length = 1449

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
            +  DIET    S    + ++G     +   I   +++   +P                 
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVK-LKDGEIVD-SFSTFVDPKVNIPYKITELTSITQN 492

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                    ++L    +     + VAHN+ F+    KK L   G  +     + T  LAR
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLAR 551

Query: 102 TNGLPS---SLKNACLALNFS 119
                     L      L  S
Sbjct: 552 YLYPDLKKVKLNLVAKHLGIS 572


>gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 384

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 29/130 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D + V L D        P  +
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKHVSLIDPLGITDWTP--M 75

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---L 114
              L D  V    H    +  +F  T GI    +  I T +LA  +  P S   A     
Sbjct: 76  RDLLLDTAVTKYLHAGSEDLEVFLNTFGI--MPQPLIDTQILAAFSNRPLSWGFAAMVEE 133

Query: 115 ALNFSEHLTK 124
               +   ++
Sbjct: 134 YTGLTLDKSE 143


>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
          Length = 180

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVW--AYAEQAVITLC--AYAWDDE----PVKLWDR 47
           M  + +D ET      S   L  V V      +    TL      +D +         D 
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNRVVDSFY-TLINPQMQFDPQNIRIHGITPDM 59

Query: 48  TEQSAMPSDLLQYLR---DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
            +       +  +++       +  AHN+ F+  + +      GI  P  + I T   +R
Sbjct: 60  VQDQPTFDRVWPHIQMFYTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPRYQVIDTVKTSR 119

Query: 102 TNGLP---SSLKNACLALNFS 119
                     L     AL   
Sbjct: 120 QFLPKLPNHRLDTVSAALKIP 140


>gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
 gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
          Length = 312

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 23/115 (20%)

Query: 4   LFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRT------- 48
           + +D+ET         + ++ V  +   A+  +        W ++P    D         
Sbjct: 67  VAVDVETTGLDRETDRIIELAVQRFRFDALGRVIQVGVPRVWREDPGIPIDLRITKLTGL 126

Query: 49  -----EQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
                    +     ++ L    ++ VAHN+ F+R    + L   I  K W C+ 
Sbjct: 127 MADDLAGQVIDETAAVEILSSADII-VAHNAAFDRPFIDRRLP-AIAGKPWACSM 179


>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
 gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
          Length = 449

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 59/233 (25%), Gaps = 26/233 (11%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---G 104
             +  D+L  LR    + VAHNS F+    +      GID  +    CT  L+R      
Sbjct: 65  DQIAPDILPLLR--GSLIVAHNSRFDYTFLRHEFYRAGIDFAAPAL-CTVQLSRRLYPQF 121

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              +L +    +                A     ++        +      W        
Sbjct: 122 YKHNLDSIISRMGIQTDD-------RHRALADVLALADYLEHSLKEKTSDEWDNHCRTLM 174

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
                  +L   L        D   +    +  G  + ++   K    IA      +   
Sbjct: 175 NPKILPTQLSDSLTAKLYSLPDTVGVLVWFDHSGKVLSVEAYEKTYSEIAALLHSKEGLH 234

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277
                  ++      +L   L+L             ++      +     K L
Sbjct: 235 YVQNAADVKFIPAVGSLHA-LWLK---------AQVMQEYQEELSAPFPLKQL 277


>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 16/116 (13%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           ++ +D+E              Y      + L   +  ++   + D  E       L    
Sbjct: 238 EIAVDLE-----------HHDYRSYSGFVCLMQISTRNQDW-IVDTLELREELECLNIVF 285

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL 116
            D  ++ V H +  + I  ++  G+ +       T    +  G     L       
Sbjct: 286 TDPKIIKVLHGATMDVIWLQRDFGLYL--VGLFDTYYATKALGFEGHGLAFLLKKY 339


>gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 3   KLFIDIET--RSPQPLPKVGVWAYAEQA----VITLCA-----YAWDDEPVKLWDRTEQ- 50
            + ID ET    P     +G+              L         + +     W   +  
Sbjct: 18  FVAIDFETADHGPDSACAIGLARVENNKVVRREAVLIRPPRPRVMFTEVHGITWPMVQNA 77

Query: 51  ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA---R 101
                +   LL  +        AHN+ F+R +        G+D+P+  ++CT  +A    
Sbjct: 78  SPFGDVWRGLLPIIE-GAKFLAAHNASFDRRVLHACCIAAGLDVPALPFVCTVQIARRKW 136

Query: 102 TNGLPSSLKNACLALNFSEHL 122
               P++L   C  L      
Sbjct: 137 AL-KPANLPAVCRRLGIGLIH 156


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
            +  DIET    S    + ++G     +   I   +++   +P                 
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVK-LKDGEIVD-SFSTFVDPKVNIPYKITELTSITQN 492

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                    ++L    +     + VAHN+ F+    KK L   G  +     + T  LAR
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLAR 551

Query: 102 TNGLPS---SLKNACLALNFS 119
                     L      L  S
Sbjct: 552 YLYPDLKKVKLNLVAKHLGIS 572


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 40/149 (26%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAY--------------------AEQAVITLCAYAWD 38
            +  D+ET         + ++G                        A+   +T       
Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRIHNGEITDVFNTFVNPERPIPAKITELTGI----- 488

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWI 94
                + D  ++       L++   E V+  AHN+ F+         +   +D     ++
Sbjct: 489 -NDSMVIDAPKEKEAVEAFLEFCGKEPVLL-AHNAPFDTSFIQAVAARH-NLDFS-NTYL 544

Query: 95  CT--SVLARTNG-LPSSLKNACLALNFSE 120
            T     A   G     L      L  + 
Sbjct: 545 DTVPMCRAMLPGIKNHKLDTVAKHLKLAP 573


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD------------ 46
            +  DIET    S    + ++G     +   I   +++   +P                 
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVK-LKDGEIVD-SFSTFVDPKVNIPYKITELTSITQN 492

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                    ++L    +     + VAHN+ F+    KK L   G  +     + T  LAR
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLAR 551

Query: 102 TNGLPS---SLKNACLALNFS 119
                     L      L  S
Sbjct: 552 YLYPDLKKVKLNLVAKHLGIS 572


>gi|86608996|ref|YP_477758.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557538|gb|ABD02495.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 783

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 35/141 (24%), Gaps = 39/141 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM------P 54
           MS L ID E               A    I L      D   KL               P
Sbjct: 1   MSYLVIDTE-------------GNANLEEIALI-----DSSGKLIYHAYTQEYSPHHPQP 42

Query: 55  SDLLQYLRD-----ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART---- 102
             L Q + D     +    V H++  +  + K+       D       CT   +      
Sbjct: 43  KPLAQIVADLRRLAQGKTLVFHHADHDLKILKQAFDQVNQDWLPNPIFCT--WSAAKQCF 100

Query: 103 -NGLPSSLKNACLALNFSEHL 122
            N    SL+     L      
Sbjct: 101 PNLAGYSLEYLSKHLGIQLES 121


>gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 123

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 18/97 (18%)

Query: 1   MSKLFIDIETRS----PQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPS 55
           M+ + +D+ET         + ++G         I        +         TE + + +
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVK-VRDGKIVDRFTQLVNPGRRVSARITELTGISN 67

Query: 56  DLL---QYLRD---------ETVMCVAHNSLFERILF 80
           ++L     + D         E    V HN+ F+    
Sbjct: 68  EMLEDQPVIEDILGDFIHWTENDRLVGHNTKFDLSFL 104


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|85373619|ref|YP_457681.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
 gi|84786702|gb|ABC62884.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
          Length = 401

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 45/197 (22%), Gaps = 40/197 (20%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + ID E     T                   + L     ++E   +    +   +   L
Sbjct: 25  FVCIDTEFMRENTYW---------------PELCLIQIGNEEEAAAVDPLADGIDLQPLL 69

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
                +E ++ V H    +  +     G          T +                   
Sbjct: 70  DLMCENEDILKVFHAGGQDVEIVYNLTGKT--PFPIFDTQIAMMAISQS----------- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +          L     KG+  +        +         EY   DV    ++F ++
Sbjct: 117 -EQIGYANLVESWLNKTIDKGARFTDWSRRPLTDRQI------EYAIGDVTYLAKIFPKI 169

Query: 178 IPLSDGERDLWLLDQTI 194
           +           L+  +
Sbjct: 170 LNKLVKTGRGAWLNAEM 186


>gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227]
          Length = 375

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D  T +   P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLTIRDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD  +    H    +  +F    G     +  I T VLA   G P S
Sbjct: 67  KSVLRDPAITKFLHAGSEDLEVFLNKFGE--MPQPLIDTQVLAAFCGRPMS 115


>gi|170053309|ref|XP_001862614.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167873869|gb|EDS37252.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 1150

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 35/157 (22%)

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-----------RTNGLPS------- 107
            + V HN  ++R   ++   +     R++ T  L                          
Sbjct: 246 RVVVGHNVSYDRARIREQYWLKSTGLRFVDTMSLHVCVSGVTSYQRAMLKSSKELPLEDL 305

Query: 108 ------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 SL N     +      K++  K     F          + T       +Q    
Sbjct: 306 SWSSQSSLNNLADVYSLYCDGAKLD--KEKRNLF---------VEGTLPEIRAEFQSLMS 354

Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198
           YC  DV ATR +  +L PL             + + G
Sbjct: 355 YCAGDVAATRNVLTKLFPLFLQRFPHPATLAGMLEVG 391


>gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116]
          Length = 210

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLWDRTEQ 50
            + +D ET S  P    L  +      +          + L A  + D   VK+     Q
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89

Query: 51  SAMP-----SDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPS------KRWI 94
             +        L++ L        V ++  +++ +      + LG  +P+      + + 
Sbjct: 90  DLVDGISEKEALIKLLDFIGNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEVSQVYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL   C  L         
Sbjct: 150 D-KLERHLPNAYFDLSLDAICKHLELPIQDKHD 181


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 65  TVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR---TNGLPSSLKNACLALNF 118
            +  VAHN+ F+     +     GID+P   + C+  LAR          L      L  
Sbjct: 194 DLPLVAHNAQFDFTALSRACAASGIDVPEMIYGCSLTLARNEKLQVENHKLPTVASHLGV 253

Query: 119 S 119
            
Sbjct: 254 E 254


>gi|325280187|ref|YP_004252729.1| RHS repeat-associated core domain [Odoribacter splanchnicus DSM
            20712]
 gi|324311996|gb|ADY32549.1| RHS repeat-associated core domain [Odoribacter splanchnicus DSM
            20712]
          Length = 1553

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 67/276 (24%), Gaps = 21/276 (7%)

Query: 314  ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373
            A  T RW     + Q     E         +     G   +      ++  RS    S  
Sbjct: 1249 AQSTNRWKYNGKELQTT--GELGYLDYGARMYDTGLGRWFSADPEAENNLSRSPYHFSGN 1306

Query: 374  KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAI 431
              L+  D  G +     W   +   I AF N          +    +      + +    
Sbjct: 1307 NPLLNVDPDGKDY----WSTNDPALIGAFMNSLKYGFESHNFYGWHHATDADFTGDLTYN 1362

Query: 432  GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491
                +    Y          A   GL        +        +E   ++   +Q  +  
Sbjct: 1363 DITGKYYTSYGDVVNG---EAVRIGLSFD---ARIIPRIETFGYEGGFAYAQPVQGFWGN 1416

Query: 492  FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF-------ACVVQEGGSISARRVA 544
                  + G        A    ++           G           V      S ++  
Sbjct: 1417 LGYYTGISGRDKYFDGIATWEVNREGRITGLQPIAGVAPTPGLGKNAVFSFTKSSLKQGR 1476

Query: 545  NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580
             +  L           VLPS RR+ + D++    Y 
Sbjct: 1477 QMHSLYKLGANGVKEYVLPSKRRIDFLDIENKIIYE 1512


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 63  DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
           D+  + VAHN+ F+           G++  +   I T  ++R          L N     
Sbjct: 506 DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFVSRAENKEAKRHGLSNLAKLY 565

Query: 117 NFS 119
              
Sbjct: 566 KVR 568


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 1432

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 21/138 (15%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTE------ 49
            +  DIET         + ++G     +  VI   +   + E   P K+ + T       
Sbjct: 420 YIVFDIETTGLSNRNDRITEIGAVKIKDSQVIDKFSALVNPEMKIPSKIVELTGITDDMV 479

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK-KTLGIDIPSKR-WICTSVLARTNG 104
                   +L        +   VAHNS F+    +     I+   +   I T  L+R   
Sbjct: 480 VDKQTIDVILPGFLAFIGSSPVVAHNSDFDMGFIRENANRIERTIENQVIDTLKLSRILL 539

Query: 105 L---PSSLKNACLALNFS 119
                  L +    LN S
Sbjct: 540 PQLKRHRLNSIAKELNVS 557


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 426 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 484

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 485 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELAR 544

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 545 FLYPHFKNHRLNTLTKKFNI 564


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 43/146 (29%), Gaps = 41/146 (28%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQSA----------- 52
           IDIET         G +       I +  Y +D   V  +                    
Sbjct: 5   IDIETTG-------GQFNEEGITEIAI--YKFDGHEVVDQFISLVNPEKPIQPFVVKLTG 55

Query: 53  -----------MPSDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTS 97
                            + +   E  + VAHN+ F+  + K   + LG D   K+ +CT 
Sbjct: 56  INNAMLRSAPKFYEVAKRIIEITEGCVIVAHNASFDYRILKTEFRRLGYDFK-KQTLCTV 114

Query: 98  VLARTNG---LPSSLKNACLALNFSE 120
            L++         SL     AL    
Sbjct: 115 ELSKKLIPEQPSYSLGKLVRALGIPM 140


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 63  DETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116
           D+  + VAHN+ F+           G++  +   I T  ++R          L N     
Sbjct: 506 DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFVSRAENKEAKRHGLSNLAKLY 565

Query: 117 NFS 119
              
Sbjct: 566 KVR 568


>gi|302346700|ref|YP_003814998.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302150614|gb|ADK96875.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 217

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 31/177 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ETR   P+ K G         + L      D  V    R     +P  + ++L 
Sbjct: 47  IIGIDTETR---PVFKKGQRR-----KVALLQAC--DHEVCFLFRLNLIGVPECIKRFLE 96

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D TV  V  +   + ++      +D     +I   +           K+           
Sbjct: 97  DTTVPKVGLSLGDDMLML--HQRLDFKPGYFID--LQDYV-------KSLG--------- 136

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            +    + L A      I          N          Y   D     +L++RL  
Sbjct: 137 IEDMSLQKLYANVFHERITKREQLSNWEN-EILSDKQKIYASTDAWTCIKLYERLHE 192


>gi|309778352|ref|ZP_07673277.1| alpha/beta hydrolase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913883|gb|EFP59698.1| alpha/beta hydrolase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 322

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           QA I L   +   + +       Q  +P+ +   + D     V     ++ + ++ T   
Sbjct: 171 QAEIVLYGISMGADTILFCP---QEKLPAAVRCIIEDGGYTSV-----YDILSWQMTHYY 222

Query: 87  DIPSKRWICTS 97
            +P    + + 
Sbjct: 223 KMPPFPILDSM 233


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 70  AHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
           AHN+ F+   F +      + +P+  + C+  L+R   L      L      LN  
Sbjct: 190 AHNAQFDMTAFFRAAQAENLVLPTVAFGCSLALSRAANLGTPNHKLPTVAKHLNVD 245


>gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 382

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 22/152 (14%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D + + L D      M   L   LRD++VM V H    +  +F+   G  
Sbjct: 39  PKLGLIQL-FDGKQLSLIDPLAIEDM-EPLWDLLRDQSVMKVLHACGEDLEVFQHHAG-- 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                 + T ++A   G   S                   G   + +   G         
Sbjct: 95  CLPVPMLDTQLMAAFLGHGVS------------------TGFGALVKEYVGVELDKGEAR 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
           T             Y   DV     L++ L+ 
Sbjct: 137 TNWLARPLTDRQLNYAAADVFYLLPLYETLLE 168


>gi|224026503|ref|ZP_03644869.1| hypothetical protein BACCOPRO_03260 [Bacteroides coprophilus DSM
           18228]
 gi|224019739|gb|EEF77737.1| hypothetical protein BACCOPRO_03260 [Bacteroides coprophilus DSM
           18228]
          Length = 963

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 42/182 (23%), Gaps = 41/182 (22%)

Query: 29  VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV--MCVA------------HNSL 74
            I    +A  + P  +          +++ + L D  V  + +             H++ 
Sbjct: 589 DIVKILFA--ENPGVVIQVA--DKHKAEVKKILEDAGVGYVKIGVPTEERHILATLHDAT 644

Query: 75  FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGK--- 129
           +         GID     W  T   +       S+         N+ +   +    K   
Sbjct: 645 Y-------QFGIDYLRDVWYST---SYLLDRKQSMNGCAKKRFENYKQQPLEFVFDKSFT 694

Query: 130 -ALIARFCKG------SIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLS 181
             L              I +        N  +           DV + T           
Sbjct: 695 GKLSQFGLDPNRRTPSGIKAAIIREKGTNGEREMAYMLYLAGFDVKDVTMTDLISGRETL 754

Query: 182 DG 183
           + 
Sbjct: 755 ED 756


>gi|313898218|ref|ZP_07831756.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312956982|gb|EFR38612.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 322

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 27  QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
           QA I L   +   + +       Q  +P+ +   + D     V     ++ + ++ T   
Sbjct: 171 QAEIVLYGISMGADTILFCP---QEKLPAAVRCIIEDGGYTSV-----YDILSWQMTHYY 222

Query: 87  DIPSKRWICTS 97
            +P    + + 
Sbjct: 223 KMPPFPILDSM 233


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 38/149 (25%)

Query: 2   SKLFIDIETRSPQP----LPKVGVWAYAEQ--------------------AVITLCAYA- 36
           + + +D ET   +P    + ++G   Y                         IT      
Sbjct: 41  NYVVLDFETTGLRPGNDKIIQIGAVKYVNHEREETMYLMVNPQRSISNTITRITGITNKD 100

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-DIPSKRWIC 95
            ++ PV          +  DL+ ++ D  +  +AHN+ F+         I  IP    I 
Sbjct: 101 VENAPVI-------EDIAHDLITFIGD--LPIIAHNAPFDMGFLYALEDITPIPEYTVID 151

Query: 96  TSVLAR---TNGLPSSLKNACLALNFSEH 121
           T  LAR   T      L      L     
Sbjct: 152 TVKLARKAITQTPNHKLTTLTAFLKLEHD 180


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 31/142 (21%), Gaps = 36/142 (25%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 435 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 493

Query: 51  --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
                     +     ++      + VAHN+ F+           GI       + T  L
Sbjct: 494 MVKGSDPIDVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551

Query: 100 ARTNGLP---SSLKNACLALNF 118
           AR          L       N 
Sbjct: 552 ARFLYPHFKNHRLNTLTKKFNI 573


>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
 gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
          Length = 201

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 40/172 (23%), Gaps = 26/172 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
           S+  +D E  S +                 L   +       L D          L    
Sbjct: 52  SEFAVDTEQHSIRSFLGFTA----------LIQISTYKRD-YLIDAIALHDEMEILRPVF 100

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC-LALNFS 119
            +  +  V H +  + +  ++     I       T+      G P  SL        N S
Sbjct: 101 ANAAICKVFHGADSDILWLQR--DFHIYVVNLFDTARACDVLGKPQRSLAYLLQTYCNIS 158

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                          F K      P       + +    F  Y  R + +  
Sbjct: 159 T-----------NKAFQKSDWRQRPLPEDILLYARTDAHFLLYIARKLYSEL 199


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 24/139 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------- 49
            +  DIET         + ++G        ++   +   +      +  TE         
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 481

Query: 50  -QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLART 102
                 ++++    D     + VAHN+ F+    K+     L ID      I T  +AR 
Sbjct: 482 ANEPKINEVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYK-CSVIDTLQMARD 540

Query: 103 NGL---PSSLKNACLALNF 118
                    L +    L  
Sbjct: 541 LFPDLKKYGLGDLNKTLGL 559


>gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 251

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC----------------------AYAWD 38
           M ++ +D ET     +         E   I L                       A+   
Sbjct: 19  MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 75

Query: 39  DEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSK--- 91
               +   D+     + ++ +Q++       + HN+ F+        K +  +   +   
Sbjct: 76  GISTEFLQDKPLFQDIVTEFIQFVEGSE--LIIHNAPFDVGFLNSELKHVKWNKTLEDYC 133

Query: 92  RWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
           R + T +LAR    G  +SL   C          ++
Sbjct: 134 RILDTLILAREKHPGQRNSLDALCKRYEIDHFNREL 169


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L ++       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253]
          Length = 375

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D E + L D  T +   P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLTIRDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD  +    H    +  +F    G     +  I T VLA   G P S
Sbjct: 67  KSVLRDPAITKFLHAGSEDLEVFLNKFGE--MPQPLIDTQVLAAFCGRPMS 115


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
           ART55/1]
          Length = 1603

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 33/143 (23%)

Query: 3   KLFIDIETRSP----QPLPKVGVWAYAEQAVIT---------LCAY--------AWDDEP 41
            +  DIET         + ++G     +   +                      + +D+ 
Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVK-VKDGEVVDTFSEFINPGVPIPYQIEQLTSINDDM 605

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSV 98
           VK  D      +    +++  D+  + VAHN+ F+    +     LG+       + T  
Sbjct: 606 VK--DAPMFDVIVPRFVEFCGDD--IVVAHNASFDTGFVRMNAEELGLKFD-NTVLDTMT 660

Query: 99  LARTNGLPSS---LKNACLALNF 118
           L+           L   C  L  
Sbjct: 661 LSHILLPELGKFTLDRVCKELKV 683


>gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 223

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 30/135 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT--------------LCAYAWDDEPVKLW--DRTE 49
           ID ET   +  P+  V        I                 A  ++   +     D  E
Sbjct: 5   IDTETTGLEGGPETVVE--LASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDMVE 62

Query: 50  QSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--- 105
            + + S+++ +YL  +    VAHN+ F++    K   ID     WICT+ LAR+      
Sbjct: 63  GAPLLSEVIGRYLGADAY--VAHNAKFDK---SKLPQID---APWICTAKLARSLLPEHK 114

Query: 106 PSSLKNACLALNFSE 120
             S +    +L    
Sbjct: 115 SHSNQYLRYSLGLKP 129


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 32/142 (22%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY--LRD 63
           +D ET     +         +   + +     D+  V          +P    +   L D
Sbjct: 23  LDTETTGL-DVRH---DRIVQIGAVRMHGAEIDETAVFEVTVDPGIPIPEVASRIHGLAD 78

Query: 64  ETV--------------------MCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
             V                    + V H+  F+  + +      G      R +  +++A
Sbjct: 79  ADVAGKPGLAAVMPDLVAFIGDAVVVGHSIHFDMAVLRHEAERHGFVWKEPRALDVALMA 138

Query: 101 RTNGLPS---SLKNACLALNFS 119
                     SL +  L L  +
Sbjct: 139 AGLDRELVDTSLDSLALGLGVT 160


>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 247

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSV 98
           D+ E   + ++ L ++  +    VAHN+ F+               G      +   T  
Sbjct: 80  DKPEYKEVHAEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGSSIGKTTDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 24/140 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT---------LCAYA--WDDEPVKLWDRT 48
            +  DIET     +    +   A   +   +              +           D  
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTSITDDMV 486

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLART 102
           + S    ++L+   D  +  +   HN  F+        ++     I  +  I T  LAR 
Sbjct: 487 QGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIK-QPVIDTLPLARF 545

Query: 103 NGL---PSSLKNACLALNFS 119
                    L         S
Sbjct: 546 LHPDFRGYRLNTLSKRFKVS 565


>gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN]
 gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923]
 gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae]
 gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 429

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 50/194 (25%), Gaps = 34/194 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
             +D E        +   + Y+ +A +     A +   V +   +  +   + L      
Sbjct: 50  FAVDTE--------RASGFRYSNRAYLIQIRRA-NAGTVLIDPVSHGNDPLTALRPVAEV 100

Query: 64  -ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
                 + H++  +     +   + +       T +  R  G    +L      L     
Sbjct: 101 ISKDEWILHSADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLATMVQRL----L 153

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             ++ +G        +                  W     Y   DVE   EL   +  + 
Sbjct: 154 GFELAKGHGAADWSKRPL-------------PSDW---LNYAALDVELLIELRTAISKVL 197

Query: 182 DGERDLWLLDQTIN 195
             +       Q  N
Sbjct: 198 AEQDKTDWATQEFN 211


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 2   SKLFIDIETR---SPQP-LPKVGVWAYAEQAVI-TLCAYAWDDEPVK------------- 43
           S +  DIET    S    + ++G     E   I    +   + E                
Sbjct: 201 SYVVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPERPIPYKITQLTTITDD 259

Query: 44  -LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPS-KRWICTSVLA 100
            + D      +    L++      + VAHN+ F+    +     +++P     + T  LA
Sbjct: 260 MVKDAGTIEEILPQFLKFCE--GSVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 317

Query: 101 RTNGLPSS---LKNACLALNF 118
           R          L N C  LN 
Sbjct: 318 RCLMGHLGKFTLDNICKHLNI 338


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 22/136 (16%)

Query: 6   IDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ--SAMPSDL 57
           +DIET         + ++G     +  ++   +          K   +       M +D 
Sbjct: 12  VDIETTGLSPDNDNIIEIGALRVRDNKIVADFSQLIKASKPLSKTISQITGITDDMLADA 71

Query: 58  LQY---LRD-----ETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLAR--TNG 104
            +    L D     +    V HN  F+     K     G+D  +  +  T    +     
Sbjct: 72  KELDDTLSDFLRFVDNDTVVGHNIAFDANFISKKCVAYGLDFKNDTY-DTLAACKQEYPD 130

Query: 105 LPSSLKNACLALNFSE 120
           +   L++  + L   +
Sbjct: 131 VSHKLEDMIIQLGIKD 146


>gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
 gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
          Length = 193

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 25/164 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D ETR      K   +       I+L   + D        R  +  +P  L ++L +E 
Sbjct: 50  FDTETR--PSFKKGQRY------KISLMQISTD--EACFLFRLNRIGIPEALEEFLANEK 99

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHL 122
           V+ +  +   +    +K    DI    ++   +           +SL+     L   +  
Sbjct: 100 VLKIGLSLRDDFGAMRKRT--DIQPANFLD--LQNYVGQFGIEDASLQKIYAILFNKKIS 155

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                      R      D       +   + AW     Y +  
Sbjct: 156 --------KGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLK 191


>gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 254

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 31/149 (20%)

Query: 5   FIDIETRSPQP----LPKVGVWAYAEQAVIT---------LCAYAWDDEPVKLW------ 45
             D+ET         +    V        +                +   V         
Sbjct: 29  AFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADPGIEIPAEASEVHGVTTERAR 88

Query: 46  ----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTS 97
                  E +   + +LQ L D+ +  +A N+ ++  +      +     +     +   
Sbjct: 89  LEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQLNRFPVLDPY 148

Query: 98  VLARTNGL----PSSLKNACLALNFSEHL 122
           ++ +          +L   C     +   
Sbjct: 149 IMNKQVDRFRKGKRTLTALCEEYKVNLDN 177


>gi|312173552|emb|CBX81806.1| DNA polymerase II [Erwinia amylovora ATCC BAA-2158]
          Length = 787

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 4   LFIDIETRSPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMPSDL 57
           + +DIET     L  +G+         +       ++      D        +  +   L
Sbjct: 155 VSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASQLDFHLEYVASRPQLLEKL 210

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 211 NAWFARHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLMLGR 250


>gi|308185636|ref|YP_003929767.1| DNA polymerase II [Pantoea vagans C9-1]
 gi|308056146|gb|ADO08318.1| DNA polymerase II [Pantoea vagans C9-1]
          Length = 784

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +      D      +L     +  +   L
Sbjct: 150 LKWVSLDIETTQHGELYCIGLEG-CGQRQVFMLGPPNGDASALDFELIYLDSRPQLLEAL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
            Q+    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 209 NQWFAEHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLRLGR 248


>gi|292489387|ref|YP_003532274.1| DNA polymerase II [Erwinia amylovora CFBP1430]
 gi|292898394|ref|YP_003537763.1| DNA polymerase II [Erwinia amylovora ATCC 49946]
 gi|291198242|emb|CBJ45348.1| DNA polymerase II [Erwinia amylovora ATCC 49946]
 gi|291554821|emb|CBA22673.1| DNA polymerase II [Erwinia amylovora CFBP1430]
          Length = 787

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 4   LFIDIETRSPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMPSDL 57
           + +DIET     L  +G+         +       ++      D        +  +   L
Sbjct: 155 VSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASQLDFHLEYVASRPQLLEKL 210

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 211 NAWFARHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLMLGR 250


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 24/140 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT---------LCAYA--WDDEPVKLWDRT 48
            +  DIET     +    +   A   +   +              +           D  
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTSITDDMV 486

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLART 102
           + S    ++L+   D  +  +   HN  F+        ++     I  +  I T  LAR 
Sbjct: 487 QGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIK-QPVIDTLPLARF 545

Query: 103 NGL---PSSLKNACLALNFS 119
                    L         S
Sbjct: 546 LHPDFRGYRLNTLSKRFKVS 565


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 24/140 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT---------LCAYA--WDDEPVKLWDRT 48
            +  DIET     +    +   A   +   +              +           D  
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTSITDDMV 486

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLART 102
           + S    ++L+   D  +  +   HN  F+        ++     I  +  I T  LAR 
Sbjct: 487 QGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIK-QPVIDTLPLARF 545

Query: 103 NGL---PSSLKNACLALNFS 119
                    L         S
Sbjct: 546 LHPDFRGYRLNTLSKRFKVS 565


>gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3]
 gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3]
          Length = 372

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             + L    +D E + L D        P   +  L+D +V+ V H    +  +F+     
Sbjct: 39  PQLGLIQL-FDGETLSLIDPIALDEMTP--FVGLLKDASVLKVLHACGEDLEVFQNAF-- 93

Query: 87  DIPSKRWICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSID 141
           D      + T ++A   G    L           +      ++            +    
Sbjct: 94  DCTPTPMVDTQIMAAFLG--HGLSTGFAALVSEFVGVDLDKSESRT-----DWLARPLSQ 146

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                           L   Y K   +     +       + +  +    + +N     +
Sbjct: 147 ----KQLDYAAADVHYLMPMYNKLLEKVMEAGWWE-AAQQESDLQVARRIRKVNPDTAYL 201

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM-YLFLITGIDLVD 255
           D+    +L+       + L    +K       +    +  +  +      I    
Sbjct: 202 DIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFIFKEQDLWAVARFAIKNPK 256


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1403

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 29/142 (20%)

Query: 2   SKLFIDIETRS---PQP-LPKVGVWAYAEQAVI-----------TLCAYAWDD----EPV 42
             +  DIET         + ++G     E   I               +  +        
Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVK-IEDGEIIDRFSTFVNPEVPIPFKIEKLTSINDS 430

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
            +    +   +  + L++      + VAHN+ F+    +      G+       + T  +
Sbjct: 431 MVMGAPKIEQVLPEFLEFCE--GCVVVAHNAEFDTGFIRNKAAKQGMTFD-NTVVDTLAI 487

Query: 100 ARTNGLPS---SLKNACLALNF 118
           AR          L       N 
Sbjct: 488 ARFLVPRLHNFKLDTLTKHFNV 509


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLART 102
            ++  +  + ++Y   +  + V HN  ++  +      +  LG     K +  T  + R 
Sbjct: 568 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKP-KFKTFYDTLDIYRR 624

Query: 103 N---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                +   L+N     +     +                +     +  +   ++   L 
Sbjct: 625 FYPGNINYKLENLSKVYDTKHKPSHDAMD---DIIATGELLVRAINEKIKETSMERMALM 681

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++ K     +++L   L  +++ +R   L+   +N  G+ I         +      + 
Sbjct: 682 SKHLKAFTAISKKL-NELFQIAESKRPYELVVCVMN--GFNIKSMYAGDENKEKLNRLRD 738

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMY 244
           L      L D    +      +   
Sbjct: 739 LYALFRDLDDKSKGNRDALLDIIRI 763


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
           + D    + +  +L + L  +  + +AHN+ F+    K      G        +CT  L+
Sbjct: 68  VADAPTFARVADELAERL--DGRLFIAHNARFDYGFLKHEYQRLGRRFR-ADVLCTVRLS 124

Query: 101 RTN---GLPSSLKNACLALNFSE 120
           R         +L +       + 
Sbjct: 125 RRLFPEHYRHNLDSLIARHGLAT 147


>gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis]
          Length = 377

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 26/104 (25%)

Query: 4   LFIDIETRSP----QPLPKVGV--WAYAEQAVITLCAYAWDD-----EPVKLWDRT---- 48
           +F+D ET         + ++G+  + Y E   I       D+     +P +         
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQI---VDELNQYQDPQQPIPLRITEL 182

Query: 49  --------EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84
                   +  A+  + +    +E  + +AHN+ F+R  F +  
Sbjct: 183 TGITDEMVQGKAIDQEAVTQFLEEVDIIIAHNAAFDRPFFDRMF 226


>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 247

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW---ICTSV 98
           D+ E   +  + L ++  +    VAHN+ F+       F K  G  I +  +     T  
Sbjct: 80  DKPEYKQVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVIKTTDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 21/139 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVW-AYAEQAVIT-----LCA-----YAWDDEPVKLW---D 46
           M  L ID ET + +      V  A+ E   +      L       ++  +  V      D
Sbjct: 1   MRTLAIDFETANERRDSACAVGLAWIEDGRVVRREARLIRPAEMRFSPFNVRVHGIRPED 60

Query: 47  RTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLART 102
             +     + +  +L      + +AHN+ F+  +    L   G+  P    +CT  LAR 
Sbjct: 61  VADAPDFAAAMAPFLPEIAGALVLAHNASFDIGVLAAALAACGLPQPDYTSLCTLQLARR 120

Query: 103 NGLP---SSLKNACLALNF 118
                    L      L  
Sbjct: 121 QWPGQERYRLPALAARLGI 139


>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
          Length = 600

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 23/129 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L ++ +D T   V H +  + +  ++     I       T   +R   +   SL++    
Sbjct: 210 LKEHFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERNSLEHL--- 264

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +    +   + ++   Y + D      ++ 
Sbjct: 265 ----------------LRHFCGVTANKEYQNADWRSRPLSDEMIK-YAREDTHYLLYMYD 307

Query: 176 RLIPLSDGE 184
            +      E
Sbjct: 308 LMRLRLQKE 316


>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92]
 gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
          Length = 397

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 24/111 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T  P P                L   A DD+   L D  E S   S L 
Sbjct: 41  IALDTEFQRVDTFYPLPG---------------LIQVA-DDQACYLIDPLEISDF-SSLS 83

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109
              +DE V+ V H +  +  LF     I         T + A       S+
Sbjct: 84  TLFKDEGVVKVMHAATEDLELF--HKEIGALPVPLFDTQIAAALINWGFSM 132


>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
          Length = 459

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 26/140 (18%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAW---------DDEPVKLW-- 45
            +L +D ET          + +VG      +  +T  +            D E +     
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINR-KLTGSSIHIYINPQKPVGDSENIHGISD 290

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG-IDIP----SKRWICTSV 98
           D  +   + +D+   L D  +    +AHN+ F+          + +P          T  
Sbjct: 291 DFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTLA 350

Query: 99  LA--RTNGLPSSLKNACLAL 116
           LA  +  G  +SL       
Sbjct: 351 LAKNKHPGQKNSLDALVRRY 370


>gi|150865746|ref|XP_001385083.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149387002|gb|ABN67054.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 1061

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/383 (10%), Positives = 95/383 (24%), Gaps = 26/383 (6%)

Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWL 189
            +    +            + + ++      +  + ++     +   L+ L      L  
Sbjct: 445 KKDGTPTAKQAFMTGYPEWYRELFKTTDGATKQREMNLTVRTRITPLLLRLKWEGYPLIW 504

Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249
            D          D ++  KL+       +   +D+  L   +  +           F + 
Sbjct: 505 TDSQGWCFKVPFDEEIFTKLETQNYIRAQLNQKDLDLLLPELRDNGNS--------FELF 556

Query: 250 GIDLVDMSEGT-----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
            +   D ++        KS L +     L  +    +   S ++      +        +
Sbjct: 557 KVPHPDGAKKRCTQIMSKSYLRYFEDGTLTSEYNYAQEILSLNSAASYW-MGNRTRISEQ 615

Query: 305 LRGTLQFYGASRTGRWSGCVF----QPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360
                   G       S            +  +  +   +T+                  
Sbjct: 616 FVVYNDKSGEKNKFFDSKKEAKDATNMGIILPRLCTMGTITRRATENTWLTASNAKKNRI 675

Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420
              ++S I A  G   V AD+   E  + + + G+                   K   T 
Sbjct: 676 GSELKSLIEAPPGYCFVGADVDSEELWIAS-LVGDSMFKIHGGTALGWMNLEGDKHEKTD 734

Query: 421 IDKVSKEQRAI----GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476
           +   + E   I     KV      Y  G K    +       L +      +   +   +
Sbjct: 735 LHSKTAEILGISRGDAKVFNYGRIYGAGVKFATRLLKQFNSKLSEAEAEETAKLLYARTK 794

Query: 477 QAESHHLWMQDQYPEFAVKDKLI 499
              S   +++ +      +  + 
Sbjct: 795 GEMSSSKYLKRRLYHGGTESVMF 817


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 37/126 (29%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--------------- 46
            D ET    P    L ++G         +       ++    +                 
Sbjct: 400 FDTETTGLDPGVEYLTEIGA-VIVRNGEV------VEEFDTFVKPGKPITSKITELTGIT 452

Query: 47  ---RTEQSAMPSDLLQYLR--DETVMCVAHNS-LFERILF---KKTLGIDIPSKRWICTS 97
                +  +    L  +L   D  ++ V HN+  F+        K  GI+     +I T 
Sbjct: 453 NEMVADAPSEAEALKAFLDFVDGRIL-VGHNAHSFDIRFLRAAAKRSGIEFEPT-YIDTL 510

Query: 98  VLARTN 103
            +A+  
Sbjct: 511 TMAQAM 516


>gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 209

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 33/154 (21%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + LCA  + D   V++      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKTLGIDIPSKRW------ 93
           D  +  +    L+  L D       V ++  +++ +     +K LG  +P++        
Sbjct: 90  DLQDGLSEKEALI-LLIDFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIY 148

Query: 94  ICTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
               +           SL   C  L+        
Sbjct: 149 HD-KLEKHLPNAYFDLSLDAICRHLDLPLQNKHD 181


>gi|161503057|ref|YP_001570169.1| ribonuclease D [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864404|gb|ABX21027.1| hypothetical protein SARI_01122 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 371

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGADVALIDPLGITDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|323464819|gb|ADX76972.1| ABC transporter, ATP-binding protein [Staphylococcus
           pseudintermedius ED99]
          Length = 467

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 29/248 (11%)

Query: 104 GLPSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                + +    ALN           K  I +   G         T         L    
Sbjct: 101 IPRHDMDSRIHEALNHVGL---DVNPKQRIHQLSGGMKQKLAIAGTLLQGADTLFLDEPT 157

Query: 163 CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQT--INDRGYRID---LDLVL 207
              DVEAT  L+  L  L +           E     +D+   +N  G+ I     + ++
Sbjct: 158 AMLDVEATENLWNLLKDLWEDKTVLIVEHKVEHIWQHVDRVILMNHHGHIIQQGTPEYIM 217

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
              E +  E                   + T     + F    I     +      +   
Sbjct: 218 AHYESLLSEYGVWHPKAWSHAPMPQHPVQSTAQNFYFSFEQGAIQRGRRT------LYEV 271

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG----ASRTGRWSGC 323
             +     + I     +       L ++ + +   G +    Q       A++       
Sbjct: 272 DALHIEPGEWITLTGKNGSGKTSLLESMMQLIRYKGNMHYGGQKLTKIKDAAQHMFLVYQ 331

Query: 324 VFQPQNLP 331
             + Q + 
Sbjct: 332 NPELQFIQ 339


>gi|308177768|ref|YP_003917174.1| putative ribonuclease D [Arthrobacter arilaitensis Re117]
 gi|307745231|emb|CBT76203.1| putative ribonuclease D [Arthrobacter arilaitensis Re117]
          Length = 416

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 79/313 (25%), Gaps = 48/313 (15%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY--L 61
           L +D E        +   + Y ++A +       +     L D         DL      
Sbjct: 57  LAVDTE--------RASGFRYGQRAFLL--QIRREGSGTWLVD----PETLDDLSPLRTF 102

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN-ACLALNFS 119
            +     + H +  +     +   + +       T +  R  G P  SL       L   
Sbjct: 103 VNAQ-PWILHAATQDLPCLHE---LGMSPTALFDTELAGRLAGFPRVSLGTMVGELLGL- 157

Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
                            + + +    D +     ++W     Y   DVE   EL + +  
Sbjct: 158 -----------------QLAKEHSAVDWSTRPLPESW---LNYAALDVEVLEELRQAITA 197

Query: 180 LSDGERDLWLLDQTINDRGYRIDL----DLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
             + +  L    Q         D         KL  +   + ++      +L       +
Sbjct: 198 TLEEQGKLEFAIQEFEHERNLPDPVPADTPWRKLSGIHKLKSRRNLAIARELWLSRESLA 257

Query: 236 RQTYALRMYLF-LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294
           R        L      +  V+    ++ ++L               R   +         
Sbjct: 258 RSRDVAPGRLIPDRAIMAAVEKRATSVPALLQIPGFHTRNAKRDAARWVDAIQRGQSTKD 317

Query: 295 LSEAVSSDGRLRG 307
           L +  +S   L  
Sbjct: 318 LPDLRASKTGLPH 330


>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 247

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW---ICTSV 98
           D+ E   +  + L +++D     VAHN+ F+       F K  G  + +  +     T  
Sbjct: 80  DKPEYKDVHDEFLDFIKDAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTTDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
 gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
          Length = 247

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRW---ICTSV 98
           D+ E   +  + L +++D     VAHN+ F+       F K  G  + +  +     T  
Sbjct: 80  DKPEYKDVHDEFLDFIKDAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTTDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
          Length = 385

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 43/180 (23%), Gaps = 25/180 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L    +D   + L D      M    +  + +  V+ V H+   +   F      D
Sbjct: 39  PHLGLIQL-YDGHQLVLIDPLAIDNM-QPFIDLMENTEVVKVLHSCSEDIEAFLTAF--D 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   T +      +  SL  A                  L+   C           
Sbjct: 95  TVPTPVFDTQLAGSILDMGPSLGYA-----------------KLVELLC-DISLDKGESR 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
           T        +    Y   DV      +++L         +  + Q I      +D     
Sbjct: 137 TDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIYQEI---ALLVDKKRAQ 193


>gi|29899116|ref|NP_829893.1| type B DNA polymerase [Bacillus cereus ATCC 14579]
 gi|29899079|gb|AAP12349.1| type B DNA polymerase [Bacillus cereus ATCC 14579]
          Length = 729

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 40/193 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQ 59
             L +D ETR              +   + L      D        T      +      
Sbjct: 14  KLLTLDTETRGLTG----------DVFRVGLF-----DGENYYVANTFDEILNIFDQYKN 58

Query: 60  YLRDETVMCVAHNSLF------------ERILFKKTLGIDIPSKRWI-CTSVLARTN-GL 105
           Y          HN  F            +R+ F K++ I+         + +L  +   L
Sbjct: 59  Y----ECHVYVHNLDFDLGKIATTLFTRDRVCFAKSIFINGNVVTLHADSMILHDSLRLL 114

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFG 160
           P +L+  C     +++  K          +   + D              N         
Sbjct: 115 PGTLEKLCKDFGLTDNAKKDLSDIMKEQGYAIYNADGSFNKRKSLGNYFENVPADDPTLN 174

Query: 161 EYCKRDVEATREL 173
           EY + D  +  E+
Sbjct: 175 EYLEYDCRSLHEI 187


>gi|319892072|ref|YP_004148947.1| Duplicated ATPase component YkoD of energizing module of
           thiamin-regulated ECF transporter for
           HydroxyMethylPyrimidine [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161768|gb|ADV05311.1| Duplicated ATPase component YkoD of energizing module of
           thiamin-regulated ECF transporter for
           HydroxyMethylPyrimidine [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 467

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 29/248 (11%)

Query: 104 GLPSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
                + +    ALN           K  I +   G         T         L    
Sbjct: 101 IPRHDMDSRIHEALNHVGL---DVNPKQRIHQLSGGMKQKLAIAGTLLQGADTLFLDEPT 157

Query: 163 CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQT--INDRGYRID---LDLVL 207
              DVEAT  L+  L  L +           E     +D+   +N  G+ I     + ++
Sbjct: 158 AMLDVEATENLWNLLKDLWEDKTVLIVEHKVEHIWQHVDRVILMNHHGHIIQQGTPEYIM 217

Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267
              E +  E                   + T     + F    I     +      +   
Sbjct: 218 AHYESLLSEYGVWHPKAWSHAPMPQHPVQSTAQNFYFSFEQGAIQRGRRT------LYEV 271

Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG----ASRTGRWSGC 323
             +     + I     +       L ++ + +   G +    Q       A++       
Sbjct: 272 DALHIEPGEWITLTGKNGSGKTSLLESMMQLIRYKGNMHYGGQKLTKIKDAAQHMFLVYQ 331

Query: 324 VFQPQNLP 331
             + Q + 
Sbjct: 332 NPELQFIQ 339


>gi|332030729|gb|EGI70405.1| Putative exonuclease mut-7-like protein [Acromyrmex echinatior]
          Length = 955

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-----YLRDETVMCVAHNSLFERIL 79
            +Q  + L   A +D  V + D T       +L          ++ ++ +      +  +
Sbjct: 377 TKQPELALMQVATEDN-VYILDVTTIGDKLLELWNELGLVLFGNKDIIKIGFGIAQDMTV 435

Query: 80  FKKTLG----IDIPSKRWICTSVL 99
            + +L     I    + ++   +L
Sbjct: 436 IRNSLPALSSIKTHGQGYLDLMLL 459


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|170109177|ref|XP_001885796.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639376|gb|EDR03648.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 47/198 (23%), Gaps = 45/198 (22%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRT--------EQSAM 53
            L +D+E                    I++    +   E V L D T             
Sbjct: 34  TLAVDLE-----------GINLCRHGKISIIQIMSSVSEVVWLVDVTTLGSQAFDHVGPY 82

Query: 54  PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113
              L   L D  +  V ++   +        G+++         +L     +  SL    
Sbjct: 83  GRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNL--TGVYDLQLLE--LAVRHSL---- 134

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-------------NHVQAWQLFG 160
                         GK++ +     +   P                              
Sbjct: 135 ----RRHTKFLNGLGKSITSYLTPPTEWEPIKQAGLRLFQPDFGGSYSVFEDRPLDPRIV 190

Query: 161 EYCKRDVEATRELFKRLI 178
            YC +DV    EL + L 
Sbjct: 191 AYCAQDVTLLFELEETLR 208


>gi|224092356|ref|XP_002309573.1| predicted protein [Populus trichocarpa]
 gi|222855549|gb|EEE93096.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIK-AFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430
           +   L+ AD + IE R++   + +   I+       D+++   A+    P D V+  +R 
Sbjct: 272 DNWLLLTADYSQIELRLMEHFSKDSTLIELPAKPHGDVFIMIAARWTGKPEDSVNSVERD 331

Query: 431 IGK 433
             K
Sbjct: 332 QTK 334


>gi|215509404|gb|EEC18857.1| DNA polymerase gamma, putative [Ixodes scapularis]
          Length = 1055

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 5/162 (3%)

Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389
           LPR   +  +  + ++                  ++S + A  G  +V AD+   E  + 
Sbjct: 692 LPRLIPAGTVTRRAVEPT-WLTASNAYKDRVGSELKSMVQAPKGYHIVGADVDSQELWIA 750

Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS----KEQRAIGKVMELALGYQGGA 445
           + +A   +                 KA  T +   +       R   KV+  A  Y  G 
Sbjct: 751 SILADAHFAEMHGCTAIGWMTLQGNKAVGTDMHSRTATSVGISRDQAKVINYARIYGAGQ 810

Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487
              + +       L     + K+   +   +        + +
Sbjct: 811 PFAQRLLMQFNHRLDAQEASTKAKKMYAQTKGVRVAVPEVVE 852


>gi|188025635|ref|ZP_02959307.2| hypothetical protein PROSTU_01143 [Providencia stuartii ATCC 25827]
 gi|188022569|gb|EDU60609.1| hypothetical protein PROSTU_01143 [Providencia stuartii ATCC 25827]
          Length = 783

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAMPS 55
           +  + +DIET     L  +G+    +     +     +         +L     +  +  
Sbjct: 152 IKAVSLDIETSQYGELYSIGLSGCGDN---VVFMLGPEQGSALNNTHRLVYVNSRPQLLD 208

Query: 56  DLLQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
            L ++L+  D   + +  N   F+  + +K     GI +   R
Sbjct: 209 KLNEWLQQYDPDAI-IGWNLIQFDLNVLQKHAERYGIPLQLGR 250


>gi|170782038|ref|YP_001710370.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 443

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E        +   + Y+++A +    +                   S+L + +RD
Sbjct: 72  IAVDAE--------RASGFRYSQRAYLIQV-FRRGAGTFLFDPPAIGDF--SELDEVIRD 120

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116
             V  V H +  +    ++   + +  +R   T + +R  GLP   L      L
Sbjct: 121 --VEWVLHAASQDLACLRE---VGLDPQRIFDTELASRLLGLPRVGLGTVVEEL 169


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 45  WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
            D      +  D+  YL     + VAHN  F+     K     GID    +  CT  LAR
Sbjct: 71  VDAPRFDEVAKDVYSYLE--KAIFVAHNVSFDFSFLHKQFLDVGIDWKPIKL-CTVRLAR 127

Query: 102 TNGL---PSSLKNACLALNFS 119
                    SL + C  LN  
Sbjct: 128 KIFPGYTSYSLGSLCKNLNIP 148


>gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 385

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + L   A  D    L D   Q          + D+ V+ V H +  +       LG  
Sbjct: 37  PQLCLIQVASPD-ITTLIDPMAQDINLQPFFDLMIDKKVVKVFHAARQDIETI-YHLGGV 94

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V     G                           I + C G         
Sbjct: 95  I-PSPLFDTQVAGSICGFG------------------DSISYDQIVQRCTGHHLDKSSRF 135

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
           T  +     +    Y   DV   R+++  L    + ++    ++  +
Sbjct: 136 TDWSCRPLSEKQLLYALADVTYLRDVYLTLKKQLEKKKRTHWMNDEM 182


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 69  VAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119
           VAHN+ F+    +   K +G        +CT +++          +L   C     +
Sbjct: 579 VAHNAPFDLAFLRLKEKVIGRRFD-NPVLCTVLMSAGLFDHSGQHTLDALCDRFGIT 634


>gi|312889736|ref|ZP_07749283.1| transposase IS4 family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297786|gb|EFQ74908.1| transposase IS4 family protein [Mucilaginibacter paludis DSM 18603]
          Length = 303

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 31/141 (21%), Gaps = 3/141 (2%)

Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506
                     +++ +   +                 +              L     E +
Sbjct: 13  KVDDFCKEYEVEIVKHQLDAGPYKVRNRKASLADSEIITILVAFHSGYFTNLKHFYLEHI 72

Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566
            + +R    G++   + +       V     +    +     +         HI +  +R
Sbjct: 73  CRHYRGYFPGLVSYNRFVELQSRVAVPMMLFLKTCCMGRSRGINFV---DSTHIKVCHNR 129

Query: 567 RLVYSDVKGDCSYLNTATSQL 587
           R+    V    +     +   
Sbjct: 130 RIHNHKVFASVAERGQCSIGW 150


>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
          Length = 599

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 23/129 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L ++ +D T   V H +  + +  ++     I       T   +R   +   SL++    
Sbjct: 209 LKEHFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERNSLEHL--- 263

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
                           +  FC  + +    +    +   + ++   Y + D      ++ 
Sbjct: 264 ----------------LRHFCGVTANKEYQNADWRSRPLSDEMIK-YAREDTHYLLYMYD 306

Query: 176 RLIPLSDGE 184
            +      E
Sbjct: 307 LMRLRLQKE 315


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
          Length = 445

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 43/169 (25%), Gaps = 22/169 (13%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKTLGI 86
             + L   A DD+     D        S LL  L  +E V+ V H    +  +     G 
Sbjct: 40  PELCLVQIA-DDKEAAAIDPMAPGIDLSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGR 98

Query: 87  DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
                    T +                           + G + +     G        
Sbjct: 99  T--PHPIFDTQIA------------------MMAVSQSEQIGYSNLVESWLGFSIDKGAR 138

Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195
            T  +     +   EY   DV    ++F R++           LD  + 
Sbjct: 139 FTDWSRRPLTERQIEYAIGDVTHLSKIFPRILKRLIKTGRGEWLDIEME 187


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 68  CVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNF 118
            VAHN+ F+    ++         D      + T  L+          +L   C  LN 
Sbjct: 356 IVAHNAPFDMAFLRRQCRNQDYAFD---NPVLDTVHLSAVVFGGSAEHTLDALCNRLNV 411


>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 245

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-------DIPSKRWIC 95
            L D+ +   + ++ L+++  +    VAHN+ F+        G+        +   +   
Sbjct: 77  FLVDKPDYRDVHAEFLEFI--KGAELVAHNAPFDVGFMDHEFGMLDPSIGKTVDYCKVTD 134

Query: 96  TSVLARTN--GLPSSLKNACLALNFS 119
           T  +A+    G  ++L   C      
Sbjct: 135 TLAMAKKIFPGKRNNLDILCDRYGID 160


>gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax
           marinus SJ]
          Length = 295

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 20/113 (17%)

Query: 3   KLFIDIETRSPQPL-------PKVGVWAYAE-------QAVITLCAYAWDDEPVKLWDRT 48
            + +D+ET    PL         + V  Y E          I +  +  D       D  
Sbjct: 20  IVALDLETTGLSPLIDKVIELSAIKVTPYGEEVFDELIDPKIEIPKFTIDI-HGITNDMV 78

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
           +       +L    +   ++  VAHN+ F+          +G+ +      C+
Sbjct: 79  QGKRTLDKVLPEFINFIGSLPLVAHNAKFDLGFIVFGMHQIGLPLHESHVYCS 131


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIR 151


>gi|153811721|ref|ZP_01964389.1| hypothetical protein RUMOBE_02114 [Ruminococcus obeum ATCC 29174]
 gi|149832124|gb|EDM87209.1| hypothetical protein RUMOBE_02114 [Ruminococcus obeum ATCC 29174]
          Length = 823

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 37/148 (25%), Gaps = 24/148 (16%)

Query: 24  YAEQAVITL-----CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF--- 75
           Y ++  + L      AY+ +            S +  ++   L    +  +  NS F   
Sbjct: 683 YIDEFHLLLKEEQTAAYSVEIWKRFRKWGGIPSGITQNIKDLLASREIENIFENSDFILM 742

Query: 76  ------ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK 129
                 +R +  K L I     +      L+                  +    K +  K
Sbjct: 743 LNQAAGDRQILAKQLNI--SPYQ------LSYVTNSGEGEGLL--FYGTTIIPFKDKFDK 792

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQ 157
            L       +         +    +  +
Sbjct: 793 NLKLYSLMTTKPEEVEKREKEMEAEKHE 820


>gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens
           GS-15]
 gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens
           GS-15]
          Length = 218

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 69  VAHNSLFERILFKKTL---GIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSEH 121
           VAHN+ F+R      L   G    +  + C+ + A    TN     L+     L+    
Sbjct: 89  VAHNASFDRRFLDAELSRIGRR-RTGDFACSMLAARRIYTNAPNHRLETLVSHLSLQTD 146


>gi|300715286|ref|YP_003740089.1| DNA polymerase II [Erwinia billingiae Eb661]
 gi|299061122|emb|CAX58229.1| DNA polymerase II [Erwinia billingiae Eb661]
          Length = 786

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMP 54
           +  + +DIET     L  +G+         +       ++      D      + +  + 
Sbjct: 152 LKWVSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASKLDFNLEYVSSRPQLL 207

Query: 55  SDLLQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             L  +    D  V+ +  N   F+  + +K     GI +   R
Sbjct: 208 EKLNAWFVQHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLKLGR 250


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRW---ICTSVL 99
           D+ +   +  D ++Y+R   ++   HN+ F+        + LG+DI +        T  +
Sbjct: 74  DKPDFKTIAQDFIEYIRGAELLI--HNAPFDVGFMDYEFRKLGLDIKTTDICLVTDTLQM 131

Query: 100 AR--TNGLPSSLKNACLALNFSEHL 122
           AR    G  +SL   C  L      
Sbjct: 132 ARQMYPGKRNSLDALCDRLGIDNSK 156


>gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
 gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
          Length = 383

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 68/248 (27%), Gaps = 25/248 (10%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87
             + +   A  D    + D   +    +     + +E V  V H    +  +       +
Sbjct: 37  PKLCVIQVASVD-EAIIIDALAEGLDLAPFFALMGNEKVKKVFHAGRQDIEIVWHLA--E 93

Query: 88  IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147
           I       T V A   G   S                      L+ R    +ID      
Sbjct: 94  IIPHPVFDTQVAAMVLGYGDS------------ISY-----DQLVQRITGHAIDKSSRFT 136

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR----GYRIDL 203
             +    +      Y   DV   R+++K+L+   +       + + +N       YR D 
Sbjct: 137 DWSRRPLSQAQLT-YAVADVTHLRDVYKKLMEDLESRGRADWMGEEMNILTSPSTYRQDP 195

Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263
           +   +  +   ++ ++L             +  +       +      ++      T + 
Sbjct: 196 ETAYERLKSRVRKPRELAVLAEVAAWREREAQARDLPRGRIIKDEVIGEIAVQQPQTAEK 255

Query: 264 ILSHSNIT 271
           +    ++ 
Sbjct: 256 LAELRSLP 263


>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
 gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
          Length = 260

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 7/76 (9%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG--LP 106
            +      +L D   + VAHN  F+     K+L   G  I   R ICT   A+       
Sbjct: 137 RVLEAFRLFLNDS--VFVAHNVKFDYNFISKSLYECGFGILLNRKICTIDFAQCCIESSH 194

Query: 107 SSLKNACLALNFSEHL 122
             L      L      
Sbjct: 195 YKLDALKEILKIESTH 210


>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 964

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 21/125 (16%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDE 64
           ID+E  S      +G         +     +  +    +     ++ +   L      ++
Sbjct: 777 IDLEYYSENKDKNLGF--------VCTIQISTVNMDFMIDAMALRNQINQLLNKSLFLNK 828

Query: 65  TVMCVAH---NSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALN 117
           T + + H   N   +    K    IDI       T              SLKN     L 
Sbjct: 829 TKIKILHGCEN---DIKWLKNDFDIDI--VNLFDTMFAEMIIKNKQQSYSLKNLSQDYLG 883

Query: 118 FSEHL 122
                
Sbjct: 884 VELDK 888


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 37/193 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
           ++ +D E      L             + L    +D   + L D T    +     + L 
Sbjct: 27  EIALDSE---ADNLHHFET-------KLCLLQLRFD-GTIYLLDVTADLDL-DRFWEIL- 73

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
              +  + H S F+  LF++  G +        + + ++  G+    L            
Sbjct: 74  -SGLHLIMHGSDFDLRLFEEFCGFEAK--SLFDSMLASQLLGIKRIGLAAL--------- 121

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
             +   G  +     K      P                +Y   DV    EL  +L+   
Sbjct: 122 -LEENFGVKIPKDSQKSDWSQRPLTPK----------MLKYAATDVLYLHELRDKLMARI 170

Query: 182 DGERDLWLLDQTI 194
           D       L Q  
Sbjct: 171 DELGRGEWLKQRC 183


>gi|307132624|ref|YP_003884640.1| DNA polymerase II [Dickeya dadantii 3937]
 gi|306530153|gb|ADN00084.1| DNA polymerase II [Dickeya dadantii 3937]
          Length = 790

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 38/115 (33%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----------------AWDDEPVK 43
           +  + +DIET              +    +                      A D   + 
Sbjct: 155 LKTVSLDIET--------------SRHGELYCIGLEGCGQRQVFMLGPENGNADDAGDLT 200

Query: 44  LWDRTEQSAMPSDLLQYLR--DETVMCVAHNS-LFERILFKKT---LGIDIPSKR 92
           L     +  +   L  +L+  D  V+ +  N   F+  + ++      I +   R
Sbjct: 201 LEYVASRPQLLEKLNHWLQTYDPDVI-IGWNLVQFDLRVLQQHAERYRIPLRLGR 254


>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
 gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
          Length = 414

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 36/189 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E        +   + Y     +       +D    L D T      S L   + D
Sbjct: 51  IALDVE--------RAQGFRYGSDPYLV--QIRREDVGTFLID-THALPDLSVLQPGVED 99

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
              + + H+ L +    ++   + +       T + AR  GL             +    
Sbjct: 100 ---VWLLHDCLQDLPNLRQ---VGLRPSALFDTEIAARLIGL--------ERFGLAAV-V 144

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +   G  L+           P            + +  Y   DVE   EL+ RL    D 
Sbjct: 145 EQVLGLGLVKDHQASDWSVRP----------LPKEWLRYAALDVELLTELYYRLSKRLDE 194

Query: 184 ERDLWLLDQ 192
                   Q
Sbjct: 195 MGRWEWAQQ 203


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 31/183 (16%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAV--IT------LCAYAWDDEPVK---------- 43
           S L +D+ET    P+    +   A +    I       L   +    P            
Sbjct: 10  SFLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNA 69

Query: 44  -LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----KRWICTSV 98
            + D+     +    L++  +   + VAHN+ F+      ++   I         +CT  
Sbjct: 70  LVVDKPTIEEVFPQFLKFSENS--IIVAHNAQFDMSFL-NSVSYQITGRSIQNPVLCTQN 126

Query: 99  LARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHV 153
           LA+         SL N     N   +        AL+    F K       ++  +   +
Sbjct: 127 LAKRLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALVTYELFKKIIDYLYMFNINKVMDL 186

Query: 154 QAW 156
              
Sbjct: 187 VRL 189


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVITL-----------CAYAWDDEPVKLWDRT 48
            +  D+ET     +        A       I              +Y   +      +  
Sbjct: 412 FVVFDLETTGFSNINDKITEIGAVKIRDFEIVDRFSELVNPEKDISYRVQELTGITNEMV 471

Query: 49  EQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
           +      ++L    +     + VAHN+ F+        K  G++  +K+   T +LAR  
Sbjct: 472 KDKPTIEEILPKFMEFVGDDVLVAHNADFDTGFIMQKCKEQGLEYKNKKV-DTLMLARIM 530

Query: 104 GL---PSSLKNACLALNFS 119
                   L      +   
Sbjct: 531 LPNLKRYKLDKVAKEVGVQ 549


>gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1]
 gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1]
          Length = 476

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 37/198 (18%)

Query: 6   IDI-ETRSP-QPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQY 60
           ID  E       L   G    A  A   +   Y+ +D  ++   +     +    +L + 
Sbjct: 19  IDTLEAYKDYCSLLAAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKL 78

Query: 61  LRD--------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKN 111
             D          V  + H+S+ +   F     I +  +    T + A+  G     L +
Sbjct: 79  GADWNEFNKAVGDVPWIIHDSMQDLPGF---FDIGLRPRALFDTEIAAKLLGRKRFGLSS 135

Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171
                                      + +    D +     + W     Y   DVE   
Sbjct: 136 VTEYY-----------------LGLTLAKEHSAADWSYRPLPRDW---RNYAALDVELLI 175

Query: 172 ELFKRLIPLSDGERDLWL 189
           EL + +      +  L  
Sbjct: 176 ELEEVMRVELKKQGKLSW 193


>gi|260550878|ref|ZP_05825084.1| exonuclease [Acinetobacter sp. RUH2624]
 gi|260406005|gb|EEW99491.1| exonuclease [Acinetobacter sp. RUH2624]
          Length = 228

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 16/116 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVI-------------TLCAYAWDDEPVKLW 45
           M  + +D ET +   LP    +A  E     +                  ++    V   
Sbjct: 1   MQAIILDTETHTLNGLPIEIAYAPIELNAGKLTLDKSKLFDQLYQVGAPISYAAMAVHHI 60

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
             ++    P      L D T   + HN  ++     +  G+D+   + ICT  LAR
Sbjct: 61  LESDLENQPHYKTFKLPDSTTYIIGHNIDYDIAAIARC-GVDVSHIKPICTLALAR 115


>gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
 gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
          Length = 214

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 20/98 (20%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDEPVKLWD------------ 46
            + +DIET    P  +      A       I    +   +                    
Sbjct: 18  YISLDIETTGLAPRQETITEIGAVRVRDGRIADRFSMLINPGK--HIPSRITALTGISDA 75

Query: 47  RTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK 82
             E + M  + +    D  +    + HN  F+     K
Sbjct: 76  MVEDAPMIDEAIPAFVDWVDGDRLIGHNIRFDLSFLLK 113


>gi|218281861|ref|ZP_03488200.1| hypothetical protein EUBIFOR_00768 [Eubacterium biforme DSM 3989]
 gi|218217150|gb|EEC90688.1| hypothetical protein EUBIFOR_00768 [Eubacterium biforme DSM 3989]
          Length = 701

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 37/148 (25%), Gaps = 24/148 (16%)

Query: 24  YAEQAVITL-----CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF--- 75
           Y ++  + L      AY+ +            S +  ++   L    +  +  NS F   
Sbjct: 562 YIDEFHLLLKEEQTAAYSVEIWKRFRKWGGIPSGITQNIKDLLASREIENIFENSDFILM 621

Query: 76  ------ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK 129
                 +R +  K L I     +      L+                  +    K +  K
Sbjct: 622 LNQAAGDRQILAKQLNI--SPYQ------LSYVTNSGEGEGLL--FYGTTIIPFKDKFDK 671

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQ 157
            L       +         +    +  +
Sbjct: 672 NLKLYSLMTTKPEEVEKREKEMEAEKHE 699


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 30/147 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLC--AYAWDDEPVKLW-DRTEQ----- 50
               DIET    P    + ++ ++ Y+ +  I      +   +   +   D T       
Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKYSNKRRIATYHSYFKISEPLKQHIKDLTHITDELL 410

Query: 51  -------SAMPSDLLQYLRDETVMCVAHN-SLFERILF-KKTLGIDIPS--KRWICTSVL 99
                    +  ++       +V+ VAHN   F+      K + + +       I T  L
Sbjct: 411 AEKGQDLEVVLKEVKD-FTQGSVL-VAHNGIEFDFPFLNAKYIKLGMEPLSNPLIDTLRL 468

Query: 100 ARTNGL-----PSSLKNACLALNFSEH 121
           ++T          SL   C  +     
Sbjct: 469 SQTIFSEEKYKSHSLGAICKRVGVEYD 495


>gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
 gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
          Length = 905

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 24/173 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPSS 108
            +  D+ + L+D   + VAHN  F+    KK      I    K+ + T            
Sbjct: 73  EIADDIYEQLKD--CIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTL----------- 119

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDV 167
                     +    K  +   L         ++   D           + F ++    +
Sbjct: 120 -----ELFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAFKKFESLPI 174

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +  ++L+  L      +    L +       + ID     + +++I ++++ L
Sbjct: 175 DTLKQLYY-LSKHLKYDLFNILFEMVREHHNHDIDYQYA-QFEQIIYKKQQDL 225


>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
 gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 517

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 35/141 (24%), Gaps = 21/141 (14%)

Query: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +  +  V H   F+ I      G+ +     I +                  AL    
Sbjct: 255 FTNPNIEKVFHGCDFDMIWLSYNFGLYV--VNCIDS-------------GQCARALKLQH 299

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
              K      L+ ++C    D               +   EY + D      +  +L   
Sbjct: 300 FSLKY-----LLQKYCNVDADKKYQLADWRLRPLT-KEMIEYARGDTHYLLYIIDQLRNE 353

Query: 181 SDGERDLWLLDQTINDRGYRI 201
                 L  +    N+   R+
Sbjct: 354 CIDAGVLEEVLNKSNELCLRL 374


>gi|288802306|ref|ZP_06407746.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
 gi|288335273|gb|EFC73708.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
          Length = 224

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 31/177 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + ID ETR   P+ K G         + L      D  V    R     +P  + ++L 
Sbjct: 47  IIGIDTETR---PVFKKGQRR-----KVALLQAC--DREVCFLFRLNLIGVPDCIKRFLE 96

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D TV  V  +   + ++      +D     +I   +           K+           
Sbjct: 97  DTTVPKVGLSLGDDMLML--HQRLDFKPGYFID--LQDYV-------KSLG--------- 136

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179
            +    + L A   +  I          N          Y   D     +L++RL  
Sbjct: 137 IEDMSLQKLYANVFQERITKREQLSNWEN-EILSDKQKIYASTDAWTCIKLYERLHE 192


>gi|294900785|ref|XP_002777114.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239884571|gb|EER08930.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 201

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV--AHNSLFERILFKKTLGID 87
           I L   A     V L+       +   L   L     + V    +S  ++    ++ GI+
Sbjct: 49  IALIQVATPTNGVLLFRCRPGEDLHPILRDALTCPNTVKVVCGFDSR-DKKKLMESFGIE 107

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           IP +  +  S  A+  G+    LK  C  L F+                 +       Y 
Sbjct: 108 IPPRSLVDVSKEAQRQGMHKTGLKAICRDLQFNIFKPTYPNFH---QWSGRLRKSQIRYA 164

Query: 147 CTRANHVQAWQ 157
              A       
Sbjct: 165 AADAWFPLLIA 175


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 206

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 34/137 (24%)

Query: 1   MSKLFIDIETRSPQP----LPKVGVWAYAEQAV-----------ITLCAYAWDDEPVKLW 45
           M    +D+ET    P    + ++GV    E              +           V + 
Sbjct: 1   MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGM------GAVFVH 54

Query: 46  DRTEQS----AMPSDLLQYLRD--ETVMCVAHNSLFERILF----KKT-LGIDIPSKRWI 94
             T+         +DLL  +R        VAHN+ F+         +   G+ +P +  +
Sbjct: 55  GLTDADVADAPTLADLLPQIRGLFSGRALVAHNATFDVGFLNASFARAGYGMHVPREATV 114

Query: 95  CTSVLARTNGLP--SSL 109
           CT  L++    P    L
Sbjct: 115 CTMELSKIYLPPGRHGL 131


>gi|262212093|gb|ACY35663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+           + NG    +        
Sbjct: 7   PSDSRFRELSLPSPNQVMVGADLAGIELRMLSHF------PARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|262212075|gb|ACY35654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212091|gb|ACY35662.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212181|gb|ACY35707.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342239|gb|ACY54630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+           + NG    +        
Sbjct: 7   PSDSRFRELSLPSPNQVMVGADLAGIELRMLSHF------PARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKR---WICTSVL 99
           D+   + +    ++Y++   ++   HN+ F+            I + +        T  +
Sbjct: 77  DKPTFNEIAQQFIEYIQGAELLI--HNASFDIGFMDYEFSKLNIGLNTSEICLITDTLQM 134

Query: 100 AR--TNGLPSSLKNACLALNFSEHL 122
           AR    G  +SL   C  L      
Sbjct: 135 ARQMYPGKRNSLDALCDRLGIDNSK 159


>gi|294898985|ref|XP_002776447.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239883438|gb|EER08263.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 201

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 30  ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV--AHNSLFERILFKKTLGID 87
           I L   A     V L+       +   L   L     + V    +S  ++    ++ GI+
Sbjct: 49  IALIQVATPTNGVLLFRCRPGEDLHPILRDALTCPNTVKVVCGFDSR-DKKKLMESFGIE 107

Query: 88  IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146
           IP +  +  S  A+  G+    LK  C  L F+                 +       Y 
Sbjct: 108 IPPRSLVDVSKEAQRQGMHKTGLKAICRDLQFNIFKPTYPNFH---QWSGRLRKSQIRYA 164

Query: 147 CTRANHVQAWQ 157
              A       
Sbjct: 165 AADAWFPLLIA 175


>gi|198277046|ref|ZP_03209577.1| hypothetical protein BACPLE_03254 [Bacteroides plebeius DSM 17135]
 gi|198269544|gb|EDY93814.1| hypothetical protein BACPLE_03254 [Bacteroides plebeius DSM 17135]
          Length = 1235

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 42/182 (23%), Gaps = 41/182 (22%)

Query: 29   VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV--MCVA------------HNSL 74
             I    +A  + P  +          +++ + L D  V  + +             H++ 
Sbjct: 861  DIVKILFA--ENPGVVIQVA--DKHKAEVKKILEDAGVGYVKIGVPTEERHILATLHDAT 916

Query: 75   FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGK--- 129
            +         GID     W  T   +       S+         N+ +   +    K   
Sbjct: 917  Y-------QFGIDYLRDVWYST---SYLLDRKQSMNGCAKKRFENYKQQPLEFVFDKSFT 966

Query: 130  -ALIARFCKG------SIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLS 181
              L              I +        N  +           DV + T           
Sbjct: 967  GKLSQFGLDPNRRTPSGIKAAIIREKGTNGEREMAYMLYLAGFDVKDVTMTDLISGRETL 1026

Query: 182  DG 183
            + 
Sbjct: 1027 ED 1028


>gi|149200305|ref|ZP_01877325.1| hypothetical protein LNTAR_01777 [Lentisphaera araneosa HTCC2155]
 gi|149136602|gb|EDM25035.1| hypothetical protein LNTAR_01777 [Lentisphaera araneosa HTCC2155]
          Length = 177

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 34/136 (25%)

Query: 5   FIDIET----RSPQPLPKVGVWAYAEQAVIT-----------LCAYAWD--DEPVKLWDR 47
            ID ET      P P  ++G+  + E   I            L A + +  +  V  W  
Sbjct: 6   AIDFETVPGEHGPIP-AEIGLVVFNEAGQILHYFEASAPVNQLYAKSANCCESIVSTWP- 63

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART----N 103
                    + ++L+++ ++   HN  ++  + KK+    +  +R + +  ++R      
Sbjct: 64  --------QIKEHLQNKVIL--GHNIGYDYAILKKSFP-ALEIERTVDSLQISRQVYKDL 112

Query: 104 GLPSSLKNACLALNFS 119
               SL      L+ +
Sbjct: 113 FSDYSLSALLECLDLT 128


>gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
 gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
          Length = 210

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLWDRTEQ 50
            + +D ET S  P    L  +      +          + L A  + D   VK+     Q
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89

Query: 51  SAMP-----SDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPS------KRWI 94
             +        L++ L        V ++  +++ +      + LG  +P+      + + 
Sbjct: 90  DLVDGISEKEALIKLLDFIGNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL   C  L         
Sbjct: 150 D-KLERHLPNAYFDLSLDAICKHLELPIQDKHD 181


>gi|326795603|ref|YP_004313423.1| ribonuclease D [Marinomonas mediterranea MMB-1]
 gi|326546367|gb|ADZ91587.1| ribonuclease D [Marinomonas mediterranea MMB-1]
          Length = 383

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 36/196 (18%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LL 58
           ++ + +D E      L +   +         L   + + E   L D      +     L 
Sbjct: 29  LNVIAVDTE-----FLRRTTYYPITG-----LIQIS-EGEKAVLID---PQTITEWAPLK 74

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             + +  VM V H    +  +F + LG  +    +  T +                A   
Sbjct: 75  DLMVNLDVMKVFHACSEDLDVFDRLLG--VLPTPFYDTQI--------------GEAYAN 118

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            +          LI         +     +        +    Y   DV    +++ + I
Sbjct: 119 GQWSVSYV---KLIQ-AYLSIEVAKDETRSDWTVRPLTEAQKRYAALDVVYLAKVYPQQI 174

Query: 179 PLSDGERDLWLLDQTI 194
            +   +  L    +  
Sbjct: 175 EMLQKKNMLDWALEDC 190


>gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
 gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
          Length = 1267

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 73  SLFERILFKKT----LGIDIPSKRWICTSVLARTN-GLPSS-LKNACLALNFSEHLTKME 126
             ++  + ++      GI +  ++     +L+R               A+       KM 
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLI-EKMN 822

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L ++F  G   +   + T       W+ F  Y      AT
Sbjct: 823 ---HLKSKFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHAT 863


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|325297922|ref|YP_004257839.1| Phosphoribosylformylglycinamidine synthase [Bacteroides salanitronis
            DSM 18170]
 gi|324317475|gb|ADY35366.1| Phosphoribosylformylglycinamidine synthase [Bacteroides salanitronis
            DSM 18170]
          Length = 1233

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 39/184 (21%), Gaps = 35/184 (19%)

Query: 26   EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF-----ERILF 80
            +   I    +A  + P  +           ++ + L D  V  V           ER + 
Sbjct: 858  KHEDIVKILFA--ENPGVVIQVA--DKHKHEVKKILEDAGVGFV----KLGTPADERHIL 909

Query: 81   ------KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGK--- 129
                      GID     W  T   +       S+         N+     +    K   
Sbjct: 910  VTLHEATYQFGIDYLRDVWYST---SYLLDRKQSMNGCAKKRFENYKMQPLETVFDKSFT 966

Query: 130  -ALIARFCKG------SIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLS 181
              L              I +        N  +           DV + T           
Sbjct: 967  GKLSQFGLNPDRRTPSGIKAAIIREKGTNGEREMAYMLYLAGFDVKDVTMTDLVSGRETL 1026

Query: 182  DGER 185
            +   
Sbjct: 1027 EDIH 1030


>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
 gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
          Length = 459

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 34/144 (23%)

Query: 2   SKLFIDIETRS----PQP--------------LPKVGVWAYAEQAVITLCAYAWDDEPVK 43
            +L +D ET                       L    +  Y             D E + 
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVG-----DSENIH 286

Query: 44  LW--DRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLG-IDIP----SKRWI 94
               D  +   + +D+   L D  +    +AHN+ F+          + +P         
Sbjct: 287 GISDDFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVT 346

Query: 95  CTSVLA--RTNGLPSSLKNACLAL 116
            T  LA  +  G  +SL       
Sbjct: 347 DTLALAKNKHPGQKNSLDALVRRY 370


>gi|282895827|ref|ZP_06303910.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281199215|gb|EFA74082.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 130

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQ 59
             L++D E      +       Y   ++I + AY  D   E   ++D  ++  + +  +Q
Sbjct: 21  RTLWLDTE------IANWNT-PYPRLSLIQVLAYPSDLTGEFAYIFDVLDKPDLTAYFIQ 73

Query: 60  -YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
             + +  +  V HN+ F+     K LG +  ++  +CT
Sbjct: 74  HIMVNSNIQKVFHNADFDL----KYLGKN-QAQNVVCT 106


>gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 905

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 54/209 (25%), Gaps = 35/209 (16%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNG 104
           + +  ++   ++D   + VAHN  F+    KK      I    K+ I T     +A    
Sbjct: 72  NQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTD 129

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L     A                I        D                 F ++ K
Sbjct: 130 KSYQLSELAEAHG--------------ITLANAHRADED----AATTAKLMILAFEKFEK 171

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             ++  ++L+         +    L D          D   + K  E   Q   +   D 
Sbjct: 172 LPLDTLKQLY-----YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDF 225

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL 253
            K T     S +    L        G+  
Sbjct: 226 KKPTTNYNGSLKS---LYSKAVDQLGLTY 251


>gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1]
 gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1]
          Length = 400

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 50/199 (25%), Gaps = 42/199 (21%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
            + +D E     T                   + L   A + E     D        S L
Sbjct: 25  FVAVDTEFMRENTYW---------------PELCLVQIA-NTEEAAAIDPLADGIDLSPL 68

Query: 58  LQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
           L+ L  ++ V+ V H    +  +     G          T +         S+     + 
Sbjct: 69  LELLTENDEVLKVFHAGGQDVEIIVNMTGKT--PFPIFDTQI---------SMMAISQS- 116

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
              +          L     KG+  +        +         EY   DV    ++F +
Sbjct: 117 --EQIGYANLVDHWLNITVDKGARFTDWSRRPLTDRQI------EYAIGDVTHLSKIFPK 168

Query: 177 LIPLSDGERDLWLLDQTIN 195
           ++           LD  + 
Sbjct: 169 ILKKLMKTERGAWLDAEME 187


>gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC
           8503]
 gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
 gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC
           8503]
 gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
          Length = 1267

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 73  SLFERILFKKT----LGIDIPSKRWICTSVLARTN-GLPSS-LKNACLALNFSEHLTKME 126
             ++  + ++      GI +  ++     +L+R               A+       KM 
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLI-EKMN 822

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L ++F  G   +   + T       W+ F  Y      AT
Sbjct: 823 ---HLKSKFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHAT 863


>gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01]
 gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01]
          Length = 313

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 57/224 (25%), Gaps = 23/224 (10%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             + L    +D E + L D        P   +  L+D +V+ V H    +  +F+   G 
Sbjct: 64  PQLGLIQL-FDGETLSLIDPIALDEMTP--FVGLLKDTSVLKVLHACGEDLEVFQNAFG- 119

Query: 87  DIPSKRWICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSID 141
                  + T ++A   G    L           +      ++            +    
Sbjct: 120 -CTPTPMVDTQIMAAFLG--HGLSTGFAALVSEFVGVDLDKSESRT-----DWLARPLSQ 171

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                           L   Y K   +     +       + +  +    +  N     +
Sbjct: 172 ----KQLDYAAADVHYLMPMYNKLLEKVMEAGWWE-AAQQESDLQVAKRIRKANPDNAYL 226

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           D+    +L+       + L    +K       +    +  +   
Sbjct: 227 DIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFVFKEQDLW 270


>gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 237

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 40/146 (27%), Gaps = 32/146 (21%)

Query: 2   SKLFIDIETRSPQP-----------LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---- 46
             + +D+ET                + + G     +Q   TL        P  L      
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 47  --RTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILFKKT----LGIDIPSKRWICT- 96
                 S     LL ++    D  ++    ++ F++ +  +     LG  +    +  T 
Sbjct: 102 SAIAAGSEPVEALLDFMEFVGDSPIL--GFHAPFDQHMLSRALKESLGYRLQ-HAFFDTA 158

Query: 97  ----SVLARTNGLPSSLKNACLALNF 118
                +    N   + L +       
Sbjct: 159 EIAPMLCEHANLRHAGLDDWTRFFGL 184


>gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
 gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
          Length = 1267

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 73  SLFERILFKKT----LGIDIPSKRWICTSVLARTN-GLPSS-LKNACLALNFSEHLTKME 126
             ++  + ++      GI +  ++     +L+R               A+       KM 
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLI-EKMN 822

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L ++F  G   +   + T       W+ F  Y      AT
Sbjct: 823 ---HLKSKFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHAT 863


>gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7]
          Length = 1281

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 73  SLFERILFKKT----LGIDIPSKRWICTSVLARTN-GLPSS-LKNACLALNFSEHLTKME 126
             ++  + ++      GI +  ++     +L+R               A+       KM 
Sbjct: 781 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLI-EKMN 836

Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170
               L ++F  G   +   + T       W+ F  Y      AT
Sbjct: 837 ---HLKSKFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHAT 877


>gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
 gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Mississippi]
 gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Virginia]
 gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
          Length = 232

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 35/150 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--------WDRTEQS-- 51
            ++ +D ET               E   + L  +      V                   
Sbjct: 4   REIVLDTETTGLD---AASGDRIIEIGCVELVDF-VMTGQVFHKYINPERDIPIAATKIH 59

Query: 52  --------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWI 94
                          M    L +++D +V+ + HN+ F+    +  +   G        +
Sbjct: 60  GITTDMVKNMPKFAEMADQFLNFVQD-SVLVI-HNAGFDLKFIETEMERIGKTKLYNPVV 117

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHL 122
            T  +AR    G+P+SL   C   + S   
Sbjct: 118 DTLEVARRKFPGMPASLDALCKRFDISTSS 147


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 33/140 (23%), Gaps = 32/140 (22%)

Query: 10  TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQ-------------- 50
           T     +   G+ A     +I L      +  +        D                  
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  -----SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLAR 101
                  +   L Q+       + VAHN+ F+           G++      + T  LAR
Sbjct: 486 MVKGSDPIDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLELAR 545

Query: 102 TNGLP---SSLKNACLALNF 118
                     L       N 
Sbjct: 546 FLYPHFKNHRLNTLTKKFNI 565


>gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586]
 gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586]
          Length = 373

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 24/112 (21%)

Query: 2   SKLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56
           S++ +D E     T                   + L      D    +      +  P  
Sbjct: 23  SEVALDTEFVRTRTYY---------------PQLGLIQLYDGDNLSLIDPLAISNWEP-- 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
               L++  V    H    +  +F    G       +I T +LA   G P S
Sbjct: 66  FRALLQNPQVTKYLHAGSEDLEVFLNAFG--CLPSPFIDTQILAAFRGKPLS 115


>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
          Length = 890

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/333 (9%), Positives = 84/333 (25%), Gaps = 62/333 (18%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   + +D+   L D        S L +     T++ + H +  +    ++   + +   
Sbjct: 296 LIQISTEDKD-YLIDALALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQR--DLSLYVV 352

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   A+    P+ SL                      + +FC  + +         
Sbjct: 353 NMFDTHQAAKALQYPALSLAFL-------------------MKKFCNVTPNKQFQLADWR 393

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
                 +    Y + D      ++K +                          +L+ K  
Sbjct: 394 IRPLPDE-LKSYAREDTHYLIYIYKMMK------------------------RELLHKTN 428

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSIL 265
           +     R  ++           +           L   + ++L    +       +  +L
Sbjct: 429 KCDKLLRSVIERSTEVCKKRYFKP---------ILHEDSHLELYRKCKKMFDNRQMSHLL 479

Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325
               I   A++  L +     ++   +      V+ D  L         +        + 
Sbjct: 480 ELHQIILKAREQPLEKAILKETSGRGVLKEMSKVNMDSVLHCPHDLTKTNEFRDDLPTLL 539

Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLG 358
           Q +    + +    +   I+  +         G
Sbjct: 540 QNEQYKAENKRVAQVDLAIEKPSSYSIFNSDQG 572


>gi|262212059|gb|ACY35646.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212071|gb|ACY35652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212081|gb|ACY35657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212101|gb|ACY35667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212145|gb|ACY35689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+           + NG    +        
Sbjct: 7   PSDSRFRELSLPSPNQVMVGADLAGIELRMLSHF------PARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEA 116

Query: 479 ESHHLW---MQDQYPEFAVKDKLIGTA 502
                       +  E      L G  
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRK 143


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL- 57
            + ID ET         + ++G   Y     +       + +    ++ T+ + +  ++ 
Sbjct: 414 HVIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGRFGTLVNPKKEIPFEVTKLTGITDEMV 473

Query: 58  ------LQYLRD-----ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLART 102
                  + L          + VAHN+ F+        +K L  ++ +     T  +AR 
Sbjct: 474 KDAPDGKEALTALSEFMGEAVLVAHNASFDLSFLRVGLRKYLKQEVTNPAI-DTLGVARV 532

Query: 103 NGL---PSSLKNACLALNFS 119
                    L          
Sbjct: 533 LFPNLKNHKLNTLVKEFKIE 552


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
           praevalens DSM 2228]
          Length = 1404

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLC-AYAWDDE---PVKLWDRT------ 48
            +  D+ET    P    + ++G   Y     I    ++  +     P K+ + T      
Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAEFESF-INPGVRIPAKITEITGINDRM 450

Query: 49  --EQSAMPSDLLQYLRDETV-MCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLART 102
                 +   +  ++      + VAHN+ F+    +     L I+      + T  L+R 
Sbjct: 451 VKNAPGLEKVINDFIEFAGTGVLVAHNADFDYGFIRTALEKLEIEKDDYTVLDTLGLSRA 510

Query: 103 N---GLPSSLKNACLALNFS 119
                    L          
Sbjct: 511 VVKDSKNHKLNTLAKYFGVD 530


>gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061]
 gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC
           19061]
          Length = 379

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 34/179 (18%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           ++ +D E     T                   + L    +D E + L D  E S     L
Sbjct: 27  RIALDTEFVRTRTYY---------------PQLGLIQL-FDGEQLSLIDPLEISQW-QPL 69

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-----LKNA 112
              L D  V+ + H    +  +F  +          I T VLA   G P S     L   
Sbjct: 70  KALLVDPDVLKLIHAGSEDLEVFGNSF--QCLPTPMIDTQVLAAFIGHPISCGFATL--V 125

Query: 113 CLALNFSEHLTK---MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
              L+     ++       + L  + C+ +     Y    A+ +        Y     +
Sbjct: 126 AEYLHVELDKSESRTDWLARPLSRKQCEYAAADVYYLLPLADILLKKTEQAGYFDAAKD 184


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 62/204 (30%), Gaps = 15/204 (7%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTN 103
            ++  +  + ++Y   +  + V HN  ++  +     +++       K +  T  + R  
Sbjct: 574 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTLDIYRRF 631

Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               +   L+N     +     +       +          +     T    ++   L  
Sbjct: 632 YPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVRAINEKIRET---SMERMALMS 688

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           ++ K     +++L   L  +++ +R   L+   +N  G+ I         +      + L
Sbjct: 689 KHLKAFTAISKKL-NELFKIAESKRPYELVACVMN--GFNIKSMYAGDENKEKLNRLRDL 745

Query: 221 DEDIVKLTDGIIRSSRQTYALRMY 244
                 L D    +      +   
Sbjct: 746 YALFRDLDDKSKGNRDALLDIIRI 769


>gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 897

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    KR I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKRVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLAKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
 gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
          Length = 379

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 47/192 (24%), Gaps = 42/192 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           L ID E     T                   + L   A DD    +         P  L+
Sbjct: 25  LAIDTEFHREKTYY---------------PQLCLIQVANDDVIACVDPLKIDDLSP--LM 67

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
                  +  V H +  +  L    L  D   ++   T + A   G              
Sbjct: 68  DVFYRTDMTLVFHAARQDLELL--FLLRDALPQQVFDTQLAATVLGYG------------ 113

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                  + G   + + C        +  T            +Y   DV   REL+ +L 
Sbjct: 114 ------DQIGYGNLVKQCLNVDLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLE 167

Query: 179 PLSDGERDLWLL 190
                   +  L
Sbjct: 168 AKLVDTGRINWL 179


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 9   ETRSPQPLPKVGVWAYAEQAVITLCA---YAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           ET   + L   G    A+   +   +    A   +   + D  ++ A  + L        
Sbjct: 307 ETF--EALVNPGRPIPAQSTKVHGISDDMVAGAPDFTVVRDNFQRYAANAVL-------- 356

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116
              VAHN+ F+     ++  I       + T  L+          +L   C  L
Sbjct: 357 ---VAHNAPFDMAFLNRSDAIFQNP--VMDTVHLSAIVFGGSAEHTLDALCARL 405


>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 237

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 33/151 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC---------------AYAWDDEPVKLWD 46
            ++ +D ET    P  K G     E   + L                  + ++E + +  
Sbjct: 4   RQIVLDTETTGIDP--KQG-HRIIEIGCVELMNRRLTGNNFHVYINPQRSIEEEAIDVHG 60

Query: 47  RTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKTLGI-------DIPSKRW 93
            T        +  D+ Q   D  +    V HN+ F+         +              
Sbjct: 61  ITNEFLRDKPLFRDIAQEFFDYIKDAELVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120

Query: 94  ICTSVLARTNGLPS--SLKNACLALNFSEHL 122
           + T  +AR        +L   C   +     
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTK 151


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 30/151 (19%)

Query: 2   SKLFIDIETRSPQPL-PKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLL 58
            ++ +D ET     L          E   + L    Y  ++  + +            + 
Sbjct: 9   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPEAIKVH 68

Query: 59  ----QYLRDE-----------TVMCVA----HNSLFERILFK---KTLGIDIPSKRW--- 93
               + L D+             +  A    HN+ F+        + L + I +      
Sbjct: 69  GITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTNDICTV 128

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHL 122
             T V+AR    G  ++L   C  L+     
Sbjct: 129 TDTLVMARQMYPGKKNNLDALCSRLDIDNSK 159


>gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
           K601]
 gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           K601]
          Length = 242

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 32/147 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58
            ++ +D ET     L         E   + L +       + L+   E+ +    L    
Sbjct: 3   RQIVLDTETTG---LSAENGDRIIELGCVELLSRKLTGNNLHLYLNPERDSHEDALKVHG 59

Query: 59  ---QYLRDE---------------TVMCVAHNSLFERILFKKTLGI-DIPS-----KRWI 94
              ++LRD+                   + HN+ F+     K L +  +P         I
Sbjct: 60  ISNEFLRDKPKFAEVVHDILEYLRGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVI 119

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T  +A+    G  +SL   C  L   
Sbjct: 120 DTLAMAKEMFPGKRNSLDALCDRLEVD 146


>gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 225

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFS 119
              + V+HN+ F+R   +      G  +  K W CT    R   G  +SL  +   L   
Sbjct: 114 SADLIVSHNTDFDRPFVESEFAGAGRSLRGKSWHCTMQAERARGGGSASLDASIDRLGIQ 173

Query: 120 EHL 122
              
Sbjct: 174 RQS 176


>gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 897

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 54/209 (25%), Gaps = 35/209 (16%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNG 104
           + +  ++   ++D   + VAHN  F+    KK      I    K+ I T     +A    
Sbjct: 72  NQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKNCNIQYRPKKVIDTLEIFKIAFPTD 129

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L     A                I        D                 F ++ K
Sbjct: 130 KSYQLSELAEAHG--------------ITLANAHRADED----AATTAKLMILAFEKFEK 171

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             ++  ++L+         +    L D          D   + K  E   Q   +   D 
Sbjct: 172 LPLDTLKQLY-----YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDF 225

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL 253
            K T     S +    L        G+  
Sbjct: 226 KKPTTNYNGSLKS---LYSKAVDQLGLTY 251


>gi|262342161|gb|ACY54591.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 11/144 (7%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
             +   RS    S     V +D +G+E R L           +  +G            +
Sbjct: 7   PFAHEYRSLFKPSGNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIH 59

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQ 477
           T + ++    R  GK     L Y GG           G      S+   +          
Sbjct: 60  TALAEIYGTDRKSGKGATYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLS 116

Query: 478 AESHHLWMQDQYPEFAVKDKLIGT 501
             +       +  +  V   L G 
Sbjct: 117 GFADLNAAIQERAKSGVLKGLDGR 140


>gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
 gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
          Length = 375

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E      + +  ++       I L    +D + + L D      + S   Q + D
Sbjct: 25  LAIDTE-----FMRRRTLY-----PEIALIQV-FDGQHLGLIDPCCDLDL-SRFWQIMSD 72

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104
             ++ V H+   +  +F K   I         T       G
Sbjct: 73  AAILKVLHSPSEDVEVFLKHGCI---PSPIFDTQFALSLLG 110


>gi|311280959|ref|YP_003943190.1| DNA polymerase B region [Enterobacter cloacae SCF1]
 gi|308750154|gb|ADO49906.1| DNA polymerase B region [Enterobacter cloacae SCF1]
          Length = 785

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/102 (9%), Positives = 24/102 (23%), Gaps = 34/102 (33%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--------------- 45
           +  + +DIET                   +         + V                  
Sbjct: 152 LKWVSLDIETT--------------RHGELYCIGLEGCGQRVVYMLGPENGDATGCDFQL 197

Query: 46  -DRTEQSAMPSDLLQYLR--DETVMCVAHNS-LFERILFKKT 83
                +  +   L  +    D  ++ +  N   F+  + +K 
Sbjct: 198 EYVASRPQLLEKLNAWFAIHDPDII-IGWNLVQFDLRVLQKH 238


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 41  PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTS 97
              + D      +  +L   L D  V+ VAHN+ F+    +++    G  +   + +C+ 
Sbjct: 67  DATVADAPTFDEIADELFACL-DGKVI-VAHNARFDYSFLRQSFQRCGYTL-GNKTLCSV 123

Query: 98  VLARTN---GLPSSLKNACLALNFSEHL 122
            L+R          L      L  +   
Sbjct: 124 KLSRQLFPEHRSHGLDRIIERLGLTIDN 151


>gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402]
 gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 297

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 31/154 (20%)

Query: 65  TVMCVAHNSLFERILF----KKTLGIDIPSKRWICTSVLAR--TNGLPSSLKNACLALNF 118
            +  V H + F+  +     K+    ++P+  + C+ ++AR        SLKN     N 
Sbjct: 80  DLPVVCHFAQFDMKVLHASIKRYH-FEMPTLPYFCSCIMARDTVTNHSYSLKNMMTYYNL 138

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-- 176
                                  +      +A  +   +L   Y   +   T +  K+  
Sbjct: 139 E--------------FHGHHHALND----AKACAMITVRLLKNYESLNQYLTYKRRKKYI 180

Query: 177 ----LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206
               L                I     +++ D +
Sbjct: 181 SSVSLKSKRAQMARYQTDLNRITPDTSKVNKDHL 214


>gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 897

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 54/209 (25%), Gaps = 35/209 (16%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNG 104
           + +  ++   ++D   + VAHN  F+    KK      I    K+ I T     +A    
Sbjct: 72  NQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTD 129

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L     A                I        D                 F ++ K
Sbjct: 130 KSYQLSELAEAHG--------------ITLANAHRADED----AATTAKLMILAFEKFEK 171

Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
             ++  ++L+         +    L D          D   + K  E   Q   +   D 
Sbjct: 172 LPLDTLKQLY-----YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDF 225

Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL 253
            K T     S +    L        G+  
Sbjct: 226 KKPTTNYNGSLKS---LYSKAVDQLGLTY 251


>gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 177

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 29/147 (19%)

Query: 1   MSKLFIDIET-----RSPQPLPKVGVWAYAEQAVIT-----LC----AYAWDDEPVKLW- 45
           M+ + +D ET      S   +      A      +      L      ++  +  +    
Sbjct: 1   MNFVAMDFETANREKHSAVSIA----LAIVRDNQVVDKFYSLIKPETTFSSYNTAIHGLH 56

Query: 46  --DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSV 98
             D  +    P           E  + VAHN+ F+  + K   +   ID P    + T  
Sbjct: 57  RQDVADAPKFPEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTVQ 116

Query: 99  LARTNGL---PSSLKNACLALNFSEHL 122
            +R          L      L  +   
Sbjct: 117 TSRKLFPNFENHKLNTVAGNLGITLDH 143


>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
          Length = 893

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 50/208 (24%), Gaps = 41/208 (19%)

Query: 6   IDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD- 56
           +D+ET                +     I    ++  +  V++    +     +  M    
Sbjct: 9   VDLETTGNQLDYDEIIQIGITFVRDQKIVGTYHSMINTDVEIPPFIQALTSIEEDMLKQA 68

Query: 57  --LLQYLRD-----ETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVL---ARTN 103
               +   D     +  + VAHN  F+    KK      I    K+ I T  L   A   
Sbjct: 69  PYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFKIAFPT 128

Query: 104 GLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
                L     A +                 K +I  F K                    
Sbjct: 129 DKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQK-------------FETLPLD 175

Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGER 185
              +          +L+  L  +    +
Sbjct: 176 TLKQLYYLSKNLKYDLYHILFEMVRQYK 203


>gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
 gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
          Length = 324

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 38/102 (37%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDD---------------EPVKLWD-- 46
           ID ET              AE A   I   A+ +DD               +P       
Sbjct: 75  IDTETTGLN---------KAEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPAN 125

Query: 47  ----------RTEQSAMPSDLLQYLRDETVMCVAHNSLFERI 78
                       +  ++   +L+ L     + +AHN+ F+R 
Sbjct: 126 ITELTGIDDAMVKGQSIDFHVLEALIKPADLIIAHNAAFDRP 167


>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
 gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
          Length = 934

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 24/144 (16%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSA 52
             + +D+ET        +           E   I     ++ +     PV + + T    
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPVFITELTGIDE 63

Query: 53  MPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA 100
                    +D         +    VAHN  F+        +  G        I T  LA
Sbjct: 64  SLVKQAPLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVELA 123

Query: 101 RTNGL---PSSLKNACLALNFSEH 121
           +          L++          
Sbjct: 124 QILLPTADSYKLRDLAKKHELEHD 147


>gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
 gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
          Length = 223

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPSKRWIC 95
            L+D+ E   +  + L+++  +    VAHN+ F+            K +G      +   
Sbjct: 56  FLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITD 113

Query: 96  TSVLARTN--GLPSSLKNACLALNFS 119
           T  +A+    G  ++L   C      
Sbjct: 114 TLAMAKKIFPGKRNNLDVLCERYGID 139


>gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335]
 gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335]
          Length = 273

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 54  PSDLLQ----YLRDETVMCVAHNSLFERILFK---KTLGIDI--PSKRWICTSVLARTN- 103
           P ++       L     +  AHN  F+    +   K LGI    P  + +CT +L+R   
Sbjct: 97  PEEIWPKCQPLLE-GDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQKLCTVILSRMLL 155

Query: 104 --GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161
                 SL N     NF    +   E      + C     +        +     + FG+
Sbjct: 156 ADLPSRSLPNLIKHFNFDIDTSHRAE---ADTKACWLLAKTLLTQIQNEDDETLLKRFGQ 212

Query: 162 YCKRDVEATREL 173
              R  +A + L
Sbjct: 213 QWIRLQDAAKIL 224


>gi|218783107|ref|YP_002434425.1| hypothetical protein Dalk_5288 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764491|gb|ACL06957.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 248

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 25/181 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
              F+DIET         G+     +  +      +D + V  +       +P   +   
Sbjct: 83  KTAFLDIET--------SGLDQDMHEITVIGV---YDGQKVFSY--VNGFNLPDFEIDIA 129

Query: 62  RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120
             +  M +  N ++F+    +++       +  I      R  G    LK     L  S 
Sbjct: 130 EYD--MVITFNGAMFDLPFIRRSFPSITLPEGHIDLMHALRKLGYRGGLKKIEKDLGISR 187

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G         G      +   R     A      Y   D+   + L +     
Sbjct: 188 GEDIDGLG---------GYEAVLLWRAWRNGDKAALDRLIAYNTADIVNLKPLMELAYDR 238

Query: 181 S 181
            
Sbjct: 239 L 239


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 6/56 (10%)

Query: 70  AHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFS 119
            HN  F+            ID+     I T  L+R          L +       +
Sbjct: 508 GHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRMLHPEYKNHKLDSLTKRYKIN 563


>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 303

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 6   IDIETRSPQP----LPKVG--VWAYAEQ----AVITLC-------AYAWDDEPVKLWDRT 48
           +D ET         + ++G  ++ Y         +            A   E  ++   T
Sbjct: 45  VDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEVHGIT 104

Query: 49  ----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97
               +   +    +    D   + +AHNS F+R+  +K L +   +  W C+ 
Sbjct: 105 DEMVQGKRIDDAAVAAFLDGVSVVIAHNSKFDRVFLEKRLSV-FETLPWGCSL 156


>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
 gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
          Length = 260

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 7/76 (9%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG--LP 106
            +      +L D   + VAHN  F+     K+L   G  I   R ICT   A+       
Sbjct: 137 RVLEAFRLFLNDS--VFVAHNVKFDYNFISKSLYECGFGILLNRKICTVDFAQCCIQSSH 194

Query: 107 SSLKNACLALNFSEHL 122
             L      L      
Sbjct: 195 YKLDTLKEILKIESIH 210


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRW---ICTSVL 99
           D+ +   +  D ++Y+R   ++   HN+ F+        + LG+DI +        T  +
Sbjct: 74  DKPDFKTIAQDFIEYIRGAELLI--HNAPFDVGFMDYEFRKLGLDIKTTDICLVTDTLQM 131

Query: 100 AR--TNGLPSSLKNACLALNFSEHL 122
           AR    G  +SL   C  L      
Sbjct: 132 ARQMYPGKRNSLDALCDRLGIDNSK 156


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKME 126
           VAHN+ F+R +            +WICT  LAR    G     +    +L          
Sbjct: 78  VAHNASFDRRML------PEMPGQWICTMTLARQLWPGQKYGNQALRHSLKLDVTPPADL 131


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTNGLP 106
             +    ++++ D T+  VAHN+ F+    ++     +G D      I T  +AR     
Sbjct: 486 EEVLPKFMEFVGDSTM--VAHNAPFDMGFIRRDVKKIMGYDYKP-AVIDTLQMARDLYPE 542

Query: 107 ---SSLKNACLALNFSEHL 122
                LKN    L  S   
Sbjct: 543 LKAYGLKNLNKVLGLSLDN 561


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
 gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
          Length = 934

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 24/144 (16%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSA 52
             + +D+ET        +           E   I     ++ +     PV + + T    
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPVFITELTGIDE 63

Query: 53  MPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLA 100
                    +D         +    VAHN  F+        +  G        I T  LA
Sbjct: 64  SLVKQAPLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVELA 123

Query: 101 RTNGL---PSSLKNACLALNFSEH 121
           +          L++          
Sbjct: 124 QILLPTADSYKLRDLAKKHELEHD 147


>gi|224583693|ref|YP_002637491.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912118|ref|ZP_04655955.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|224468220|gb|ACN46050.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 371

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
 gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
          Length = 930

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 34/149 (22%)

Query: 2   SKLFIDIETR--SPQPLPKVGVWAYA---EQAVITLC--AY---------------AWDD 39
             + +D+ET   S +          A   E   I     ++                 D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 40  EPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
             VK        + M ++LLQ         +AHN  F+    K   K  G    +   I 
Sbjct: 64  NLVKQAPLFCDVAPMVAELLQ-----GAYFIAHNVHFDWNFLKEELKQAGYGEVNCPKID 118

Query: 96  TSVLARTNGL---PSSLKNACLALNFSEH 121
           T  LA+          L++          
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKHELEHD 147


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 19  VGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77
           +    Y   + +    +  +  E  +     ++  +  D L++++D   + + HN  F+ 
Sbjct: 534 LTPKKYVGDSYLVHGFSDQFLKEKGE-----DKERVLKDFLEFVKD--TVVIGHNITFDI 586

Query: 78  ILF---KKTLGID-IPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKA 130
            +     + LG++    K +  T  +AR          L+      N     +       
Sbjct: 587 TILNSELQRLGLEKANFKTYYDTLDIARRFYPSLTNHKLETLSKLFNTETKSSHDAMDDI 646

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
           L  +     +     + T  N +  +  + +              +  P+ +   +L   
Sbjct: 647 LATKDVLMVMLKEKVEPTIINRMAVYGKYIK--------------KFQPIYEEITNLKE- 691

Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250
              I +    I   +     + I +++     ++ +          +    R  L     
Sbjct: 692 LSYIKNPKDIIGEIVNKTKIKEIYKDQYTKINNLREFFVIAKEIENKETCPRDNLIEFLK 751

Query: 251 ID 252
           I 
Sbjct: 752 IT 753


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 1446

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 23/139 (16%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRT------- 48
              +D+ET    P    + ++GV    +  VI   +   + +   P+++ + T       
Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKIKDGKVIDKFSTFVNPQKSIPMRVVEVTKITDDMV 482

Query: 49  -EQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
                +     + L   E  + VAHN+ F+    K   K LG +     +I T  LA+  
Sbjct: 483 KNAETIDKVFPKLLEFIEGSVLVAHNADFDIGFLKHNAKVLGYEFD-FTYIDTLGLAQDV 541

Query: 104 GL---PSSLKNACLALNFS 119
                   L      L   
Sbjct: 542 FPDYKSYKLGRIAKNLGIK 560


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 36/151 (23%)

Query: 1   MSK-------LFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLW 45
           M +       +  DIET    P    + ++G         I    +   +     P  + 
Sbjct: 413 MKEHSLEDDFVVFDIETTGLNPHQDKITEIGAVK-VRNGQIVDRFSAFVNPGVSIPSFIV 471

Query: 46  -----------DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSK 91
                      D      + ++ +++++    + VAHN+ F+    K   K +G  +   
Sbjct: 472 KLTGITDDMVKDAPPVEQVLNEFMEFIQ--GSVLVAHNANFDVGFIKQNAKLMGEKVK-N 528

Query: 92  RWICTSVLARTNGL---PSSLKNACLALNFS 119
            +I T  L R          L      L   
Sbjct: 529 PYIDTLELCRKMFPELGRYKLNIVAKHLKIE 559


>gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
 gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
          Length = 197

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 22/143 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYA--------WDDEPVKLWDRTEQ 50
           M+ + ID ET +  P     V          L    Y+        +D     +    ++
Sbjct: 1   MNYVAIDFETANGYPGGACSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTAVHQLKDE 60

Query: 51  SAMP----SDLLQYLRD--ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
             +       +   +RD     + VAHN++F+  + K   +   ++     ++CT  +AR
Sbjct: 61  ECLAAPEFDVIWPQMRDFIGKDLLVAHNAVFDMGVLKGCFEVYDLEARQMTYLCTLTIAR 120

Query: 102 TNGL---PSSLKNACLALNFSEH 121
                     L            
Sbjct: 121 KVWPKMLSYKLSYLVDYYGMEYQ 143


>gi|195396214|ref|XP_002056727.1| GJ10057 [Drosophila virilis]
 gi|194143436|gb|EDW59839.1| GJ10057 [Drosophila virilis]
          Length = 591

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 57/225 (25%), Gaps = 39/225 (17%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  D E      +   G         + L   +       L+       +P DL + L
Sbjct: 72  KVLGFDCE-----WITVGGTRRP-----VALLQLSSYKGLCALFRLCCMKQIPKDLRELL 121

Query: 62  RDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
            D++V+ V     +   + +      G+ +           A T  L   +         
Sbjct: 122 EDDSVIKVGVAPQD---DAMKLSHDFGVGV-----------ASTLDLRY-MAIMS---GH 163

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK            +    C+     Q       Y   D  A   +F++L 
Sbjct: 164 PA----EGLGKLSQTHLNYVLDKNWRLACSNWEAPQLEAAQLNYAANDALAAVAIFQKLS 219

Query: 179 PLSDGERDLWLLDQTINDRGYRI----DLDLVLKLQELIAQERKK 219
              +                 +I    D+D        +++ + +
Sbjct: 220 RDLEPRTFWDWRPPKFEQLRPKIEPFLDVDFTKGFAAGLSKSQTE 264


>gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T]
 gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301]
 gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T]
 gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017]
 gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
          Length = 220

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 16/120 (13%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDL---LQYL 61
           ID ET   Q               I    +     +            +   +     ++
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDRPISPQAMAIHRITEAMVADKPWI 64

Query: 62  RD------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            D       +   VAHN+ F+R +             WICT  LAR         N  L 
Sbjct: 65  EDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGLKYSNMALY 118


>gi|227833267|ref|YP_002834974.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|262184251|ref|ZP_06043672.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|227454283|gb|ACP33036.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
          Length = 407

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 43/195 (22%), Gaps = 37/195 (18%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLR 62
             ID E  S           Y       L     +            +  + + L   L 
Sbjct: 36  FAIDTERASS----------YRFDDRAFLVQVRREGAGTFLFAPEHHRDELHAALAPVLN 85

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121
                 V H +  +         + +       T + AR  G    +L            
Sbjct: 86  --GQEWVVHAAPSDLPSLAW---LGLYPGMLFDTELAARFAGFAHPNLAAM--------- 131

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                    ++  F          D   +      + +  Y   DVE   EL   L  + 
Sbjct: 132 ---------VLELFDVELEKGYG-DSDWSETPIPRK-WRNYAALDVELLNELAVTLRDIL 180

Query: 182 DGERDLWLLDQTIND 196
             +  L    +    
Sbjct: 181 AEQDKLDWAYEEFER 195


>gi|198473987|ref|XP_002132604.1| GA25805 [Drosophila pseudoobscura pseudoobscura]
 gi|198138199|gb|EDY70006.1| GA25805 [Drosophila pseudoobscura pseudoobscura]
          Length = 18482

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 60/203 (29%), Gaps = 16/203 (7%)

Query: 141   DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
             ++     +  N    W+          +    ++  L  L     +          +   
Sbjct: 17722 NTSGLASSAQNLELRWKNVCSQSAERKQRILSIWNLLQSLIKQTAEHKNWLGKQETQLAG 17781

Query: 201   IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
              + D     ++ + + +K+L   + +L    + + R        L + TG++  ++ + T
Sbjct: 17782 YERDHKSSGKQKLEERQKELRSKLDELDSQSV-NLRHLEQTYAKLTMGTGVEPENIQKLT 17840

Query: 261   LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
             L             K ++            + + L +A+  D ++           T   
Sbjct: 17841 L-----------PTKVMLSKWRQL----TPRCHALLDAIDKDAKVLREFHTAQQEATQSL 17885

Query: 321   SGCVFQPQNLPRQERSEEILTQT 343
             +      + LP     ++   + 
Sbjct: 17886 TAIQKALEQLPSATAEDQQNGRA 17908


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLART 102
            ++  +  + ++Y   +  + V HN  ++  +      +  LG     K +  T  + R 
Sbjct: 574 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKP-KFKTFYDTLDIYRR 630

Query: 103 N---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                +   L+N     +     +       +          +     T    ++   L 
Sbjct: 631 FYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVRAINEKIIPT---SMERMALM 687

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++ K     +++L   L  +++ +R   L+   +N  G+ I         +      + 
Sbjct: 688 SKHLKAFTAISKKL-NELFKIAESKRPYELVACVMN--GFNIKSMYAGDENKEKLNRLRD 744

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMY 244
           L      L D    +      +   
Sbjct: 745 LYALFRDLDDKSKGNRDALLDIIRI 769


>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 243

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSK------RWIC 95
            L D+ E   +  + L+++  +    VAHN+ F+        G +D          +   
Sbjct: 77  FLVDKPEYRQVHQEFLEFI--KGAELVAHNAPFDVGFMDYEFGKLDAAIGKTDDYCKVTD 134

Query: 96  TSVLARTN--GLPSSLKNACLALNFS 119
           T  +A+    G  ++L   C      
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCERYGID 160


>gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus]
          Length = 1416

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 55/228 (24%), Gaps = 55/228 (24%)

Query: 15  PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74
            +    V+   + + + L      +    L+  +  S  P  L   L ++ +        
Sbjct: 82  DMEWPPVYTKGKSSRVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIKK------ 135

Query: 75  FERILFKKTLGIDIPSKRW-----ICTSVLART-----------NGLPSSLKNACLALNF 118
                     GI I   +W         + +                  SL      L  
Sbjct: 136 ---------AGIGIEGDQWKLLRDFDIKLKSFVELTDVANEKLKCAETWSLNGLVKHL-- 184

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    GK L+                 +N     +    Y   D  A   ++++L 
Sbjct: 185 --------LGKQLLKDKSIRCS-------NWSNFPLT-EDQKLYAATDAYAGLIIYRKL- 227

Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226
                E     +       G  I    + K    I++E   L   +  
Sbjct: 228 -----EILGDAVQMFAISEGEEILPSDMKKQLTSISEEVMDLANQLPD 270


>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
 gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
          Length = 934

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 32/148 (21%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLC--AY---------------AWDD 39
             + +D+ET        +           E   I     ++                 D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
             VK     +   +   +++ L+      VAHN  F+        +  G        + T
Sbjct: 64  SMVKQAPLFQD--VAPMVVELLQ--GAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 97  SVLARTNGL---PSSLKNACLALNFSEH 121
             LA+          L++          
Sbjct: 120 VELAQILLPTADSYKLRDLAKRHELEHD 147


>gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 398

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 32/151 (21%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNG--- 104
             +   +++       + VAHN+ F+  + +   K LG +   +   CT  L++T     
Sbjct: 9   YEVAKRIVEITE--GCIIVAHNAQFDNRILRTEFKRLGFEFERETL-CTVELSKTLIPDL 65

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              SL     +L                                  + +   +LF     
Sbjct: 66  PSYSLGKLVRSLGIP----------------------VTDRHRASGDALATVKLFKLLLS 103

Query: 165 RDVEAT-RELFKRLIPLSDGERDLWLLDQTI 194
           +D+E T  + F R  P    E  L  +   +
Sbjct: 104 KDIEKTIIQTFLRKQPKLQLEPKLVDIIAQM 134


>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWIC 95
            L D+ E   +  + L+++  +    VAHN+ F+               G      +   
Sbjct: 77  FLVDKPEYQDVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLNAQIGKTEDYCKVTD 134

Query: 96  TSVLARTN--GLPSSLKNACLALNFS 119
           T  +A+    G  ++L   C      
Sbjct: 135 TLAMAKKIFPGKRNNLDILCERYGID 160


>gi|124441809|gb|ABN11519.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441811|gb|ABN11520.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441813|gb|ABN11521.1| ATP-dependent helicase [Bacillus subtilis]
          Length = 604

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 32/130 (24%), Gaps = 17/130 (13%)

Query: 69  VAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH- 121
           VAHN  F+    K  L   G  +P    + T  L+R          L      L      
Sbjct: 14  VAHNIHFDLGFVKYELHKAGFHLPDCEVLDTVELSRIVFPGFEGYKLTELSEELQLRHDQ 73

Query: 122 ---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                   E   LI       +   PY           QL         + T  L   + 
Sbjct: 74  PHRADSDAEVTGLIFLEILEKLRQLPY-------PTLKQLRRLSQHFISDLTHLLDMFIY 126

Query: 179 PLSDGERDLW 188
                E   +
Sbjct: 127 ENRHTEIPGY 136


>gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179]
          Length = 377

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 80/315 (25%), Gaps = 43/315 (13%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
            S   L        +  A + L    +  +   +   T     P   +  L D  V+ + 
Sbjct: 23  YSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLTITDWQP--FIALLADANVLKIL 80

Query: 71  HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA 130
           H S  +  +F             + T ++A   G P S                   G A
Sbjct: 81  HASGEDIEIF--HQQFQQIPTPMLDTQIMANFLGFPQS------------------AGFA 120

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL---------IPLS 181
           L+A+             T        +    Y   DV     +++++             
Sbjct: 121 LLAQHYLQVELDKKASRTDWLKRPLSERQLNYAAADVYYLLPIYQKMAATMASSEWKTAI 180

Query: 182 DGERDLW--LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
             E  L+     + I+     +D+    +L        K L +   +       +     
Sbjct: 181 QQECKLFAQKRCRQISPEKAYLDIGNAWRLNRKALNNLKFLAKWRFQEGIKRNIALNFIV 240

Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA----KDLILNRLASSGSAILKLNTL 295
           +    + +     +          +L             K L+L    +      +   L
Sbjct: 241 SSEGLVQMAIHEPVHT------AQLLDLGLHPMEIKRYGKKLLLLLEQAKRVPPEQYPDL 294

Query: 296 SEAVSSDGRLRGTLQ 310
            E +S     +  L 
Sbjct: 295 IENISERPHYKKYLN 309


>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
 gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
          Length = 918

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 42/155 (27%)

Query: 1   MSKLF--IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPS 55
           M  ++  +D+ET                Q    L      D  +      D      +  
Sbjct: 1   MKPIYAVVDLETTGTDS-----TIDRIIQFGCVLVQ----DGKIINRFAADINPDRRISK 51

Query: 56  DLL-------------QYLRD---------ETVMCVAHNSLFERILFKKTL-GIDIPSKR 92
            +               Y  D            + VAHN  F+            +P   
Sbjct: 52  QIQRLTHITNQQVSKAPYFEDVADTIYNLLSNTIFVAHNIYFDYHFLSNEFVRCGLPPLS 111

Query: 93  W--ICTSVLARTNGLPSS---LKNACLALNFSEHL 122
              I T  LA+      S   L +   ++ F    
Sbjct: 112 LPGIDTVELAQVFLPTESSFRLGDLADSIGFRHDN 146


>gi|322801849|gb|EFZ22421.1| hypothetical protein SINV_07950 [Solenopsis invicta]
          Length = 612

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 20/170 (11%)

Query: 23  AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82
            + ++  ++L   A ++  V L+   +   +P  L + L  + ++ V  +S  +     K
Sbjct: 106 EWVKEGPVSLLQLATNNGVVALFRIGKIGYIPFKLKELLATKHILKVGVSSFEDGQKLVK 165

Query: 83  TLGIDIPSKRWICTSVLARTNGLPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141
             G  +     + T   +       SL   C   LN             LI   C     
Sbjct: 166 DYGCRVNGTLDLRTLADSLNLPSRKSLAAMCEQYLNIEMDK--------LIEVRCGDWDA 217

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191
           S   D   A           Y   D  A+  ++ +++  +  +   W   
Sbjct: 218 STLSDDQVA-----------YAACDALASVIIYHKIMEKNKEKYSFWQRL 256


>gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays]
 gi|238005848|gb|ACR33959.1| unknown [Zea mays]
          Length = 666

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 23/129 (17%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115
           L +  +D T   V H +  + +  ++     I       T   +R   +   SL++    
Sbjct: 216 LQEPFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERNSLEHL--- 270

Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
           L                  FC  +      +    +     ++   Y + D      ++ 
Sbjct: 271 LLH----------------FCGVTAKKEYQNADWRSRPLPDEMIK-YAREDTHYLLYIYD 313

Query: 176 RLIPLSDGE 184
            +      E
Sbjct: 314 LMRQRLQRE 322


>gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           630]
 gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-66c26]
 gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CIP 107932]
 gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-63q42]
 gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           ATCC 43255]
 gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-76w55]
 gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-97b34]
 gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-37x79]
 gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           CD196]
 gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           R20291]
 gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-32g58]
 gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile]
 gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CD196]
 gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           R20291]
          Length = 168

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSK-RWICT-----SVLARTN 103
             +     +Y+ D T+  +AHN+ F+       L  +D+     +ICT        +   
Sbjct: 71  ELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLDLEPINNYICTVELLKKCKSY-K 127

Query: 104 GLPSSLKNACLALNFSEHL 122
           G    L+ AC   N     
Sbjct: 128 GKNKKLETACAYYNIENIN 146


>gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 177

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 70  AHNSLFERILFK---KTLGIDIP-SKRWICTSVLAR--TNGLPSSLKNACLALNFSEHLT 123
           AHN++F+  + K   K  GI+   + ++ CT  + R    G+   L   C     +    
Sbjct: 85  AHNAVFDLGVLKKCLKAYGIEWKNTVKYCCTVQMGRRVLPGISHKLNVLCEHYGIALDHH 144

Query: 124 K 124
           K
Sbjct: 145 K 145


>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
 gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
          Length = 397

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 57/224 (25%), Gaps = 23/224 (10%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             + L    +D E + L D        P   +  L+D +V+ V H    +  +F+   G 
Sbjct: 64  PQLGLIQL-FDGETLSLIDPIALDEMTP--FVGLLKDTSVLKVLHACGEDLEVFQNAFG- 119

Query: 87  DIPSKRWICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSID 141
                  + T ++A   G    L           +      ++            +    
Sbjct: 120 -CTPTPMVDTQIMAAFLG--HGLSTGFAALVSEFVGVDLDKSESRT-----DWLARPLSQ 171

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                           L   Y K   +     +       + +  +    +  N     +
Sbjct: 172 ----KQLDYAAADVHYLMPMYNKLLEKVMEAGWWE-AAQQESDLQVAKRIRKANPDNAYL 226

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           D+    +L+       + L    +K       +    +  +   
Sbjct: 227 DIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFVFKEQDLW 270


>gi|198454637|ref|XP_001359658.2| GA19827 [Drosophila pseudoobscura pseudoobscura]
 gi|198132885|gb|EAL28808.2| GA19827 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 43/163 (26%), Gaps = 29/163 (17%)

Query: 52  AMPSDLLQYLRDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
            +P DL   L DE V+ V     +   +        G+ +           A T      
Sbjct: 114 QIPKDLRDLLEDEAVIKVGVAPQD---DAKKLAHDYGVGV-----------ASTLD---- 155

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L+   +             GK            +    C+     Q      +Y   D  
Sbjct: 156 LRFLAVMAGHKP----EGLGKLAKTHVDFVLDKNWRLACSNWEAKQLETSQIDYAANDAL 211

Query: 169 ATRELFKRLIPLSDGE--RDLWLLDQTINDRGY--RIDLDLVL 207
           A   +F++L    +     D   L +          +D+D   
Sbjct: 212 AAVAIFQKLSSDLEPRNFWDWRPLSEQSFRPKIEPFLDVDFAR 254


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPS-KRWICTSVLARTNGL--- 105
             +  + L++      + VAHN+ F+   +  K   I I      I T +LA+       
Sbjct: 539 EEILPEFLEFCE--GAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLMPNLH 596

Query: 106 PSSLKNACLALNF 118
              L      LN 
Sbjct: 597 NYKLDTLTKHLNV 609


>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
 gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
          Length = 934

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 32/148 (21%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLC--AY---------------AWDD 39
             + +D+ET        +           E   I     ++                 D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
             VK     +   +   +++ L+      VAHN  F+        +  G        I T
Sbjct: 64  SLVKQAPLFQD--VAPMIVELLQ--GAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 97  SVLARTNGL---PSSLKNACLALNFSEH 121
             +A+          L++          
Sbjct: 120 VEMAQILLPTADSYKLRDLAKKHELEHD 147


>gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 375

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 121 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 166

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 167 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 216

Query: 238 TYALRMY 244
              L  +
Sbjct: 217 LQLLADW 223


>gi|149236109|ref|XP_001523932.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452308|gb|EDK46564.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
          Length = 975

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 56/574 (9%), Positives = 131/574 (22%), Gaps = 98/574 (17%)

Query: 109 LKNACLAL---------NFSEHLTKM--------EEGKALIARFCKGSIDSPPYDCTRAN 151
           LK     L         +                   KA + +      ++         
Sbjct: 351 LKKLAEDLVVYIKQNKPDLEPDHANDPWLSQLDWTLKKARLKKDGTPVKNNAYLTGYPEW 410

Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           + + ++          E    L  R+ PL    + + +     +  +G+   +    +L 
Sbjct: 411 YRELFK-----SSSKTEMNISLRTRITPLLLRLKWEGYP-LFWVKSQGWCFKVPYSEELV 464

Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL--KSILSHS 268
             + ++            +    +          LF +   D   +   ++  K  L   
Sbjct: 465 AELKEKNYVQVRLTGDEIESTYDALNPAGQSY-VLFKVPHPDGPTLRCTSVLSKRFLRFF 523

Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR--TGRWSGCVFQ 326
           +   L             +        +    SD  +        A    T + +     
Sbjct: 524 DEGVLTSQYDYAAKILKLNNEASYWMGNRQRISDQFVVFNDDERKARFFKTKKENAEHLD 583

Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386
              +  +  S   +T+                     +++ I A  G   V AD+   E 
Sbjct: 584 MGIILPRLASMGTITRRATENTWLTASNAKKNKIGSELKTLIEAPKGYCFVGADVDSEEL 643

Query: 387 RVLAWIAG-EDWKIKAFANGEDIYVTTYAKAFNTPIDKVS--KEQRAIGKVMELALGYQG 443
            + + +           A G        ++  +      S     R   KV      Y  
Sbjct: 644 WIASLVGDSIFGLHGGSALGWMTLEGEKSQKTDLHSKTASILGISRNDAKVFNYGRIYGA 703

Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502
           G K   T+       L +      +         +         +++     +  +    
Sbjct: 704 GLKFATTLLKQFNPSLSEKEAEDTAKKLYASTKGKIRGSKSVKSNKFYSGGSESVMF--- 760

Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562
                                       + Q+    +    A +   + +R+        
Sbjct: 761 -----------------------NALEAIAQQPKPRTPVLGAQITEALTKRNL------- 790

Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGM---KN 616
                          +Y+ +                   +Q+   D   +L   M     
Sbjct: 791 ------------NKNTYMTSR--------------VNWTIQSSGVDYLHLLIVSMDYLIE 824

Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650
                  + +TVHDE+     +   +    L  +
Sbjct: 825 RYGIDARLAITVHDELRYLVKEEDKYMASLLLQV 858


>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
          Length = 237

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 32/154 (20%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58
           M ++ +D ET    P  K G     E   + +      +    ++   ++          
Sbjct: 1   MRQVVLDTETTGIDP--KQG-HRIIEIGCVEMIGRKLTNRHFHVYINPDREVEEEAFRVH 57

Query: 59  ----QYLRD---------------ETVMCVAHNSLFERIL----FKKTLGID--IPSKRW 93
               ++L D               +    + HN+ F+       F +  G          
Sbjct: 58  GISNEFLADKPRFHEIAQEFFDFIKGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGV 117

Query: 94  ICTSVLAR--TNGLPSSLKNACLALNFSEHLTKM 125
             + V AR    G  ++L   C          ++
Sbjct: 118 FDSLVYARKKHPGQKNNLDILCRRYGIDNSHREL 151


>gi|291335807|gb|ADD95407.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C849]
          Length = 124

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            A    R    AS G  +V ADLAGIE R+LA   G       +  G    +        
Sbjct: 5   PADKEFRELFTASPGMTMVGADLAGIELRMLAHYLG------RYDGGRYADILLNGDIHQ 58

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF 448
              DK+    R   K +  A  Y  G    
Sbjct: 59  VNADKI-GISRRQVKTVSYAYLYGAGNLKL 87


>gi|262212195|gb|ACY35714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE RVL+           + NG    +        
Sbjct: 7   PSDSRFRELSLPSPNQFMVGADLAGIELRVLSHF------PARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +            L   +   K     + + +A
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKI---GHSYDKLLPSKAAEKKGKEIRQAYIEA 116

Query: 479 ---ESHHLWMQDQYPEFAVKDKLIGTA 502
                  L    +  E      L G  
Sbjct: 117 IDGRDKLLEAIKKASERGFIKALDGRK 143


>gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-23m63]
 gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
 gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
          Length = 168

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSK-RWICT-----SVLARTN 103
             +     +Y+ D T+  +AHN+ F+       L  +++     +ICT        +   
Sbjct: 71  ELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLNLEPINNYICTVELLKKCKSY-K 127

Query: 104 GLPSSLKNACLALNFSEHL 122
           G    L+ AC   N     
Sbjct: 128 GKNKKLETACAYYNIENIN 146


>gi|296119553|ref|ZP_06838111.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967436|gb|EFG80703.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 223

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 37/148 (25%), Gaps = 35/148 (23%)

Query: 2   SKLFIDIETRSPQP-----------------------LPKVGVWAYAEQAVITLCAYAWD 38
             L  D+ET S                          L   GV      A I       +
Sbjct: 7   KMLSFDLETTSVNTREARIVTSAVLRIAGPDVVKKETLADPGVEIPEAAAKIHGIT--TE 64

Query: 39  DEPVKLWDRTEQSAMPSDLLQYLR---DETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95
               +         +  + +  ++   DE    + +N+ ++  + +   G    +     
Sbjct: 65  QARAEGRPH---DEVLQETVNAIKAAWDEGFTLIVYNAPYDLSVLRNLTGDFTVTGPVFD 121

Query: 96  TSVLARTNGL----PSSLKNACLALNFS 119
             ++ R          +L + C      
Sbjct: 122 PYLIDRVKDRYRKGKRTLGDLCKEYRVE 149


>gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
 gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
          Length = 232

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 35/150 (23%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--------WDRTEQS-- 51
            ++ +D ET               E   + L  +      V                   
Sbjct: 4   REIVLDTETTGLD---AASGDRIIEIGCVELVDF-VMTGQVFHKYINPERDIPIAATKIH 59

Query: 52  --------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWI 94
                          M    L +++D +V+ + HN+ F+    +  +   G        +
Sbjct: 60  GITTDMVKNMPKFAEMADQFLNFVQD-SVLVI-HNAGFDLKFIETEMERIGKTKLYNPVV 117

Query: 95  CTSVLAR--TNGLPSSLKNACLALNFSEHL 122
            T  +AR    G+P+SL   C   + S   
Sbjct: 118 DTLEVARRKFPGMPASLDALCKRFDISTSS 147


>gi|320087113|emb|CBY96881.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 235

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 29/112 (25%)

Query: 2   SKLFIDIETRSP--------------------QPLPKVGVWAYAEQAVITLCAYAWDDEP 41
           + + +D ET                         L K      AE   I        DE 
Sbjct: 64  NIVIVDTETTGLGREAEIIEISIIDCTGAILLNTLIKPSKDIPAEATEIHGIT----DEM 119

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93
           V+  D      M   +L+ +   +   VA+N+ F+  + ++  G  +    +
Sbjct: 120 VE--DAPSWKEMLPQVLELI---SHGWVAYNAKFDARMLEQASGSRVDPDYF 166


>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
 gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
          Length = 934

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 36/145 (24%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMP 54
             + +D+ET        +           E   I    ++    P +           + 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPLFITELTGID 62

Query: 55  SDLL---QYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
            DL+      RD         +    VAHN  F+        +  G        I T  L
Sbjct: 63  EDLVKQAPLFRDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|257052533|ref|YP_003130366.1| hypothetical protein Huta_1457 [Halorhabdus utahensis DSM 12940]
 gi|256691296|gb|ACV11633.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 251

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 26/166 (15%)

Query: 5   FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64
           F DIET                   +T  +     E        ++      L +   D 
Sbjct: 86  FFDIETTGLD----------QRHDTVTTVSVRQGGETKTFV--RDRDLTADRLREVFADA 133

Query: 65  TVMCVAHNSL-FERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
             + V+ N   F+    +++  +D +  +  +      R   L   LK     +      
Sbjct: 134 D-LLVSFNGKRFDVPFLQQSFDLDGVLDRPHLDLMYPCRQIDLTGGLKQIEKDVGIQRDR 192

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
                GK  +            Y+  R +   A +    Y + DV+
Sbjct: 193 P-DLSGKDAVRL---------WYEAERGDDA-ALETLISYNREDVD 227


>gi|61394030|gb|AAX45625.1| DNA polymerase [Enterobacteria phage PR5]
          Length = 553

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 22/97 (22%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPSDLLQ 59
               D ET    P     +            ++ + +  +    W            + 
Sbjct: 12 KIAAFDFET---DPFKHDRIPKP--------FSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 YL---RDETVMCVAHNS-LFERILFKKTLGIDIPSKR 92
          +L    +  V+  AHN   F+ +   K     +    
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 180

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 2   SKLFIDIETR---SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54
             L  D ET    S   +  + V     + ++    YA      +  D    + +     
Sbjct: 4   KVLVFDTETTGFRSDDEVLTLAVVNGVGETMVDGM-YA-PARKAEWPDAERINRISPAMV 61

Query: 55  ----------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99
                      +L +       + V +N+ F+  L  +  GI I +       + 
Sbjct: 62  AGCDPILAHREELERLFNAPDTLLVGYNTEFDIRLLAQ-SGIRITNPNRHDVMLA 115


>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 247

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSV 98
           D+ E   +  + L ++  +    VAHN+ F+               G      +   T  
Sbjct: 80  DKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 247

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSV 98
           D+ E   +  + L ++  +    VAHN+ F+               G      +   T  
Sbjct: 80  DKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 177

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 8/85 (9%)

Query: 46  DRTEQSAMPSDLLQY--LRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           D  +    P           E  + VAHN+ F+  + K   +   ID P    + T   +
Sbjct: 59  DVADAPKFPEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTVQTS 118

Query: 101 RTNGL---PSSLKNACLALNFSEHL 122
           R          L      L  +   
Sbjct: 119 RKLFPNFENHKLNTVAGNLGITLDH 143


>gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 160

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 24/119 (20%)

Query: 1   MSKLFIDIETR-----SPQPLPKVGVWAYAEQAVITL---------CAYAWDD-EPVKLW 45
           M+   ID ET          +  V      ++ V  +            A     P    
Sbjct: 1   MTFTAIDFETATAFHPCSVGIVTVQNGVIVDEFVTLIKPPNNQYSPFTIAVHGIRPRDTV 60

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPS----KRWICTS 97
           +      +  ++ + L+++TV  VAHN  F+R +  K     G+D  +     RW CT 
Sbjct: 61  NAKSFLEVYPEIKKRLQNKTV--VAHNESFDRNVLAKSMALYGLDYETLNISNRWECTL 117


>gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 375

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL     +    + P    +  +  A   +     + +    E    L
Sbjct: 121 ----MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 176

Query: 178 IPLSDGERDLWLLDQTINDRGYRI-DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236
               D  R +    Q I        D+    +L+       + L +  ++       +  
Sbjct: 177 PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDMAVN 236

Query: 237 QT 238
             
Sbjct: 237 FV 238


>gi|262212211|gb|ACY35722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424
           RS    S     V +D +G+E R L           +  +G            +T + ++
Sbjct: 13  RSLFKPSGNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHL 483
               R  GK +   L Y GG           G      S+   +            +   
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIIQGLSGFADLN 122

Query: 484 WMQDQYPEFAVKDKLIGT 501
               +  +  V   L G 
Sbjct: 123 AAIQERAKSGVLKGLDGR 140


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 33/141 (23%)

Query: 3   KLFIDIETRSPQ----PLPKVGVWAYAE-----------------QAVITLCAYAWDDEP 41
            +  D+ET         + ++G     E                   +IT       +E 
Sbjct: 5   YVVFDLETTGLDVENDNIIEIGALKVREGKVTDRFMEFLKPDMPISPMITGIT-GITNEM 63

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSV 98
           VK  +  +   +  D + +  D   + V HN +F+    KK     G     K    T  
Sbjct: 64  VK--NARDTKTVIRDFVNFCED--HILVGHNIMFDYKFMKKYASQYGESFEKKGI-DTLK 118

Query: 99  LARTNG---LPSSLKNACLAL 116
           +AR         SL+  C   
Sbjct: 119 IARKVHKDLESKSLEALCEHY 139


>gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 375

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTEITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAA---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 121 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 166

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 167 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 216

Query: 238 TYALRMY 244
              L  +
Sbjct: 217 LQLLADW 223


>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
 gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
          Length = 930

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 42/149 (28%), Gaps = 34/149 (22%)

Query: 2   SKLFIDIETR--SPQPLPKVGVWAYA---EQAVITLC--AY---------------AWDD 39
             + +D+ET   S +          A   E   I     ++                 D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 40  EPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWIC 95
             VK        + M ++LLQ         VAHN  F+    K   K  G    +   I 
Sbjct: 64  NLVKQAPLFCDVAPMVAELLQ-----GAYFVAHNVHFDWNFLKEELKQAGYGEVNCPKID 118

Query: 96  TSVLARTNGL---PSSLKNACLALNFSEH 121
           T  LA+          L++          
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKHELEHD 147


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +  ++   + D   + VAHN  F+  L  + L   G ++ + R   T  LA+       
Sbjct: 75  QVAQEIFNLIED--CVFVAHNVKFDANLLAEQLFMEGYELRTPRV-DTVELAQVFYPTFE 131

Query: 107 -SSLKNACLALNFS 119
             SL N    L   
Sbjct: 132 KYSLGNLADVLALD 145


>gi|297307109|ref|NP_001137329.2| Werner syndrome [Bos taurus]
          Length = 1404

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 35/231 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            DIE     P  K  +   A      L      +    L+  +  S  P  L   L +E 
Sbjct: 79  FDIE---WPPFKKGTLSRVA------LIQLCVAESKCYLFHISSMSGFPQGLKMLLENEA 129

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           +         ++    +   I++                   S+       N      + 
Sbjct: 130 IKKAGVGIEQDQWKLLRDFDINLK------------------SIVELTDVANEKLKCIET 171

Query: 126 EEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                L+   F K  +      C+  +     +    Y   D  A   ++++L  LSD  
Sbjct: 172 WSLNGLVKYLFGKQLLKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLANLSDPV 231

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +           +   I    V K    I++E   L E +   T G + + 
Sbjct: 232 QIFVK------SKEEEILPSDVKKQLTSISKEMMDLAERLPD-TFGKLENP 275


>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
 gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
          Length = 934

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 36/145 (24%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMP 54
             + +D+ET        +           E   I    ++    P +           + 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPLFITELTGID 62

Query: 55  SDLL---QYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
            DL+      RD         +    VAHN  F+        +  G        I T  L
Sbjct: 63  EDLVKQAPLFRDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|61393928|gb|AAX45532.1| DNA polymerase [Enterobacteria phage L17]
          Length = 553

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 22/97 (22%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPSDLLQ 59
               D ET    P     +            ++ + +  +    W            + 
Sbjct: 12 KIAAFDFET---DPFKHDRIPKP--------FSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 YL---RDETVMCVAHNS-LFERILFKKTLGIDIPSKR 92
          +L    +  V+  AHN   F+ +   K     +    
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 36/197 (18%)

Query: 3   KLFIDIETRSPQPLPK----VGVWAYAEQAVITLCAYAWDDE---PVKLWDRTE------ 49
              +D+ET    PL +    VG+    +  VI   +   + E   P ++ + T       
Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKLKDGKVIDQFSCFVNPEKPIPARVVEVTNITDYMV 482

Query: 50  --QSAMPSDLLQYLRD-ETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN 103
                +     + L   E  + VAHN+ F+    K   K LG +     ++ T  LA+  
Sbjct: 483 QDAETIEKVFPKMLEFIEGSVLVAHNAEFDIGFLKHNAKVLGYNFD-FTYLDTLSLAKEI 541

Query: 104 GL---PSSLKNACLALNFS-------------EHLTKMEEGKALIARFCKGSIDSPPYDC 147
                   L      L                         + L  +  +   D   Y  
Sbjct: 542 FPDYKSYKLGRIAKNLGIKVDVAHRALDDVDTTVKVFNIMLEKLKEKGVQTLEDVDTYSS 601

Query: 148 TRANHVQAWQLFGEYCK 164
                   ++    Y  
Sbjct: 602 DEEAKKSEYKKLKTYHA 618


>gi|61393996|gb|AAX45594.1| DNA polymerase [Enterobacteria phage PR4]
          Length = 553

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 22/97 (22%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPSDLLQ 59
               D ET    P     +            ++ + +  +    W            + 
Sbjct: 12 KIAAFDFET---DPFKHDRIPKP--------FSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 YL---RDETVMCVAHNS-LFERILFKKTLGIDIPSKR 92
          +L    +  V+  AHN   F+ +   K     +    
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 437

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 48/181 (26%), Gaps = 33/181 (18%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
               +   + Y ++A   L            +          S L   L D  +  V H 
Sbjct: 72  VDAERASGYRYGQRAY--LIQLRRQGAGTALIDPIACPD--LSGLDAALADAEM--VLHA 125

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL-ALNFSEHLTKMEEGKA 130
           +  +     +   + +  +R   T +  R  G P   L +     L        +E+G +
Sbjct: 126 ANQDLPCLAE---VGLRPRRLFDTELAGRLLGHPKVGLGSMVENVLG-----FVLEKGHS 177

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            +    +                + W     Y   DVE   EL   L    +    L   
Sbjct: 178 AVDWSTRPL-------------PEDW---LRYAALDVELLIELRDALHAELERAGKLQWA 221

Query: 191 D 191
            
Sbjct: 222 L 222


>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 247

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSV 98
           D+ E   +  + L ++  +    VAHN+ F+               G      +   T  
Sbjct: 80  DKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 39/136 (28%), Gaps = 25/136 (18%)

Query: 6   IDIETRSPQP-------------LPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQ 50
            DIET    P             L  V V  ++E     I   + A         D    
Sbjct: 462 FDIETTGLSPTEDKIIEIGAVKMLDGVVVDKFSEFVDPKI-PISPATTKLTTITDDMVIG 520

Query: 51  SAMPSDLLQYL--RDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTN-- 103
           + +   ++          + V HN  F+        + LGI       I T  L+R    
Sbjct: 521 APLIDAVVPKFVEFCGDCVLVGHNVGFDISFIIENCRRLGIK-KEFTCIDTMGLSRAFYP 579

Query: 104 -GLPSSLKNACLALNF 118
                SL+  C  L  
Sbjct: 580 QQAKHSLEAVCKTLKV 595


>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
          Length = 414

 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 36/189 (19%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D+E        +   + Y     +       +D    L D T      S L   + D
Sbjct: 51  IALDVE--------RAQGFRYGSDPYLV--QIRREDVGTFLID-THALPDLSVLQPGVED 99

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
              + + H+ L +    ++   + +       T + AR  GL             +    
Sbjct: 100 ---VWLLHDCLQDLPNLRQ---VGLRPSTLFDTEIAARLIGL--------ERFGLAAV-V 144

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183
           +   G  L+           P            + +  Y   DVE   EL+ RL    D 
Sbjct: 145 EQVLGLGLVKDHQASDWSVRP----------LPKEWLRYAALDVELLTELYYRLSKRLDE 194

Query: 184 ERDLWLLDQ 192
                   Q
Sbjct: 195 MGRWEWAQQ 203


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +  D  +++ D   + VAHN+ F+       L   G++  +   I T  L R       
Sbjct: 488 EVLRDFHEWMGDS--ILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLELGRFLYPHMK 545

Query: 107 -SSLKNACLALNFS 119
              L       +  
Sbjct: 546 NHRLNTLAKKFDIE 559


>gi|209878097|ref|XP_002140490.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556096|gb|EEA06141.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 1889

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 11/175 (6%)

Query: 118  FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                    E  K+ + +             T+A   + W+   E   +D+      F +L
Sbjct: 960  LKNSNNYDEAKKSQLEKLENFEYPEETSLRTKA-AKKQWEALKEQLSKDLNMNYVRFLKL 1018

Query: 178  IPLSDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229
             P     ++LW L+ +  +            ID  L +    ++      ++    +   
Sbjct: 1019 PPYDQTLQELWPLNVSEENFFRHCIYVLNELIDRKLAVLSSYVLGDRNYVVESFCKESYF 1078

Query: 230  GIIRSSRQTYAL-RMYLFLITGIDLVDMSEGTLKSILSHS-NITQLAKDLILNRL 282
             +  + ++                +   +   L  IL             + + L
Sbjct: 1079 YVFSNIKEQDKFNSEIDSNKMNNKVDSRAHSFLMDILQELSAEGFPILQWLDHYL 1133


>gi|61393961|gb|AAX45563.1| DNA polymerase [Enterobacteria phage PR3]
          Length = 553

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 22/97 (22%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPSDLLQ 59
               D ET    P     +            ++ + +  +    W            + 
Sbjct: 12 KIAAFDFET---DPFKHDRIPKP--------FSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 YL---RDETVMCVAHNS-LFERILFKKTLGIDIPSKR 92
          +L    +  V+  AHN   F+ +   K     +    
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP-- 106
            +  D  +++ D   + VAHN+ F+       L   G++  +   I T  L R       
Sbjct: 488 EVLRDFHEWMGDS--ILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLELGRFLYPHMK 545

Query: 107 -SSLKNACLALNFS 119
              L       +  
Sbjct: 546 NHRLNTLAKKFDIE 559


>gi|41323051|gb|AAR99740.1| DNA polymerase [Enterobacteria phage PR772]
 gi|61394066|gb|AAX45656.1| DNA polymerase [Enterobacteria phage PR772]
          Length = 553

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 22/97 (22%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPSDLLQ 59
               D ET    P     +            ++ + +  +    W            + 
Sbjct: 12 KIAAFDFET---DPFKHDRIPKP--------FSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 YL---RDETVMCVAHNS-LFERILFKKTLGIDIPSKR 92
          +L    +  V+  AHN   F+ +   K     +    
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|9626351|ref|NP_040682.1| DNA polymerase [Enterobacteria phage PRD1]
 gi|118850|sp|P10479|DPOL_BPPRD RecName: Full=DNA-directed DNA polymerase; AltName: Full=Protein
          P1
 gi|215752|gb|AAA32450.1| DNA polymerase [Enterobacteria phage PRD1]
 gi|215761|gb|AAA32452.1| DNA polymerase [Enterobacteria phage PRD1]
 gi|61394103|gb|AAX45903.1| DNA polymerase [Enterobacteria phage PRD1]
          Length = 553

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 22/97 (22%)

Query: 2  SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQSAMPSDLLQ 59
               D ET    P     +            ++ + +  +    W            + 
Sbjct: 12 KIAAFDFET---DPFKHDRIPKP--------FSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 YL---RDETVMCVAHNS-LFERILFKKTLGIDIPSKR 92
          +L    +  V+  AHN   F+ +   K     +    
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHN-SLFERILFK-KTLGIDIPS--KRWICTS 97
            +L D  EQ A    L  +L  +  + VAHN   F+    + +    +I       I T 
Sbjct: 465 AQLEDGMEQQAGLEKLRAWL--DGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTL 522

Query: 98  VLARTNGL---PSSLKNACLALNFSEH 121
            L+          +L N C  L F   
Sbjct: 523 ALSWALNPGFASHTLSNICAKLKFDFD 549


>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
 gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
          Length = 247

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL-------FKKTLGIDIPSKRWICTSV 98
           D+ E   +  + L ++  +    VAHN+ F+              +G      +   T  
Sbjct: 80  DKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLSGAIGKTSDFCKVTDTLA 137

Query: 99  LARTN--GLPSSLKNACLALNFS 119
           +A+    G  ++L   C      
Sbjct: 138 MAKRIFPGKRNNLDILCERYGID 160


>gi|237707898|ref|ZP_04538379.1| repA [Bacteroides sp. 9_1_42FAA]
 gi|319644471|ref|ZP_07998896.1| initiator RepB protein [Bacteroides sp. 3_1_40A]
 gi|229458084|gb|EEO63805.1| repA [Bacteroides sp. 9_1_42FAA]
 gi|317384083|gb|EFV65061.1| initiator RepB protein [Bacteroides sp. 3_1_40A]
          Length = 343

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 38/159 (23%), Gaps = 11/159 (6%)

Query: 97  SVLA---RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
            +++       +  SL N    L       K + GK  I  F +  +  P       +  
Sbjct: 165 MLMSGQVYPLDI--SLDNLKERLGIPADKYKDKNGKDRIDNFEERVLK-PAKAALDESCP 221

Query: 154 QAWQLFGEY----CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +           KR        +    P    E       Q      ++ID  +   L
Sbjct: 222 YTFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEVKELQAKVTARHQIDSHVYEYL 281

Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248
           +       +++     +       +          L   
Sbjct: 282 RYSCGFTSEEI-NRNKETFITAQENITDLIRELAILNGK 319


>gi|213163418|ref|ZP_03349128.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 296

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  DE     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
          Length = 1521

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 41/151 (27%)

Query: 3   KLFIDIETR---SPQP-LPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-------RTEQS 51
            +  D+ET    S +  + ++G     E   I       D     +          T+ +
Sbjct: 478 YVVFDLETTGFSSAKDKIIEIGAVK-VENGEI------TDKYSTFVNPKIPIPFRITQLT 530

Query: 52  AMPSDLLQYLRDETVM--------------CVAHNSLFERILFK---KTLGIDIPSKRWI 94
           ++  ++   +    +                VAHN+ F+    +   +  GI+       
Sbjct: 531 SITDEM--VMESPEIETILPQFLKFVGDAVLVAHNASFDVSFIEENCRQQGIEPDFTSV- 587

Query: 95  CTSVLARTNGLPSS---LKNACLALNFSEHL 122
            T  LAR      S   L     ALN S+  
Sbjct: 588 DTVGLARVLLPTLSKFKLNVVAKALNISQEH 618


>gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
          Length = 242

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 11/77 (14%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104
            +    ++++    +  VAHN+ F+                      + + +  +A+   
Sbjct: 84  QIAQSFIEFIDGAEI--VAHNANFDVSFMDHEFSMLQPIGPKTAEICQILDSLAIAKYLH 141

Query: 105 LPS--SLKNACLALNFS 119
                +L   C      
Sbjct: 142 PGQKNNLDALCKRYGID 158


>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus AH187]
 gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
           epsilon [Bacillus cereus Q1]
 gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH187]
 gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 934

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|68067898|ref|XP_675876.1| DNA binding protein [Plasmodium berghei strain ANKA]
 gi|56495304|emb|CAH94067.1| DNA binding protein, putative [Plasmodium berghei]
          Length = 392

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 66/227 (29%), Gaps = 35/227 (15%)

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113
           +   L +  ++ V H+   ++ +    L  +I         +   +      P SL+N  
Sbjct: 118 VKTILENNKIIKVCHDIKNDQDML---LSKNIEINNVFD--LYNYSIDNYIYPPSLQNLV 172

Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                     +      L    CK   +                    Y   D  A+RE+
Sbjct: 173 KTYLKKHLDKEY----RLSNWLCKNLNEKQII----------------YAANDSYASREV 212

Query: 174 FKRLIPLSDGERDLWLLDQTINDRGY--RIDLDLV--LKLQELIAQERKKLDEDIVKLTD 229
           +  L   +  ++  ++     ND      ++   +   +  E +  + + +  DI     
Sbjct: 213 YIALEKKNKNDQTFFINLNNENDYVKHSEVNKKCLGGNREYEKLPSKNRIVQNDINHEML 272

Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273
               ++   + +   +   FL       D ++      +    +  +
Sbjct: 273 NDKNNAIFNKSSQNEKASQFLQLEKTFDDKTKKERYEYIEKDKLYII 319


>gi|260939924|ref|XP_002614262.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
 gi|238852156|gb|EEQ41620.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
          Length = 930

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 5/144 (3%)

Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419
               ++S I A  G   V AD+   E  + + + G+                   K   T
Sbjct: 365 IGSELKSLIEAPKGYVFVGADVDSEELWIAS-LIGDSMFKIHGGTALGWMTLEGDKNQKT 423

Query: 420 PIDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
            +   + +     R   KV      Y  G K    +   C  +L        +   +E  
Sbjct: 424 DLHSKTADIMGISRNDAKVFNYGRIYGAGVKFATRLLKQCNANLSDAEAERLAKELYEKT 483

Query: 476 EQAESHHLWMQDQYPEFAVKDKLI 499
           +   SH    + +      +  + 
Sbjct: 484 KGLASHSKIFKRRVYHGGSESVMF 507


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
          Length = 1532

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIP-SKRWICTSVLAR 101
           +        +  D L +   +  + VAHN+ F+    +   L + +     ++ T  + R
Sbjct: 559 VIGSAGIEEVLPDFLAF--SQGAIMVAHNADFDMGFIRQNCLRLHLEAPATYMDTVAMGR 616

Query: 102 TNGLPS---SLKNACLALNFSE 120
                     L     AL    
Sbjct: 617 YLMPSLHNQKLNTLAKALKIDP 638


>gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5]
          Length = 115

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 31/116 (26%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA---------YAWDDEPVKLWDRT--- 48
           M ++  D ET          +    E   I L              +    K+       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAV 56

Query: 49  ------------EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK 91
                         + +  ++L +  D     +AHN+ F+      +   I +P  
Sbjct: 57  HGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPI 110


>gi|330843627|ref|XP_003293751.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
 gi|325075888|gb|EGC29725.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
          Length = 368

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 50/187 (26%), Gaps = 20/187 (10%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-PVKLWDRTEQSAMPSDL--L 58
            ++ +DIE      + K G         ++L   +      V L+D      +   L   
Sbjct: 164 KQIGLDIE---AVEMGKRG--------EMSLIQISTPSNASVYLFDVLTLGDIIFKLGLK 212

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           + L  + ++ V H+   +  +        +         +                   F
Sbjct: 213 EVLESKVILKVVHDCRRDSEIL--YHKYQVLLTHVYDIQIAHAIILKKIDGNLPIRRFGF 270

Query: 119 SEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFK 175
           +E    +   K         K        +  +    +   +L  +Y   D      +++
Sbjct: 271 NELTH-IYTSKEYSKYCVDIKFKTKQLFDEDNKIWAKRPIPKLLLDYACLDAAILLPIYR 329

Query: 176 RLIPLSD 182
            + P   
Sbjct: 330 TITPKLQ 336


>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 934

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 210

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 43/163 (26%), Gaps = 51/163 (31%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIP----------- 89
           D  +       L+Q L        V ++  +++ +     +K LG  +P           
Sbjct: 90  DLADGIDEKQALIQLLEFIGNRPLVGYHIRYDKKILDLACRKQLGFPLPNPLIEVSQIYH 149

Query: 90  -------SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
                     +              SL   C  L+        
Sbjct: 150 DKLEKHLPNAYFD-----------LSLDAICKHLDLPLQNKHD 181


>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
 gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
          Length = 934

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 42  VKLWDRTEQSAMPSDLLQYLRDETVMCVAHN-SLFERILFK-KTLGIDIPS--KRWICTS 97
            +L D  EQ A    L  +L  +  + VAHN   F+    + +    +I       I T 
Sbjct: 465 AQLEDGMEQQAGLEKLRAWL--DGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTL 522

Query: 98  VLARTNGL---PSSLKNACLALNFSEH 121
            L+          +L N C  L F   
Sbjct: 523 ALSWALNPGFASHTLSNICAKLKFDFD 549


>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 209

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 35/155 (22%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLWDRTEQ 50
            + +D ET S  P    L  +      +          + LCA  + D   V++     Q
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  S--------AMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIPSKRW----- 93
                         L+ ++       V ++  +++ +     +K LG  +P++       
Sbjct: 90  DLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQI 147

Query: 94  -ICTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
                +           SL+  C  L+        
Sbjct: 148 YHD-KLEKHLPNAYFDLSLEAICRHLDLPLQDKHD 181


>gi|227488764|ref|ZP_03919080.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542239|ref|ZP_03972288.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091186|gb|EEI26498.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227182068|gb|EEI63040.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 386

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 78/295 (26%), Gaps = 53/295 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62
           + ID E        +   + Y ++A   L     +     L D    +  +P  L   + 
Sbjct: 33  IAIDTE--------RASGYTYDDRAY--LIQLRQEGIGTFLIDAEALRDDLPPVLAPAVN 82

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNAC-LALNFSE 120
                 V H ++ +         + + +     T V  R  G    +L       L    
Sbjct: 83  --ACPWVLHAAVSDIPCLA---DVGMTAPTLFDTEVAGRFLGFDKVNLAAMTNRILGIDL 137

Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180
                  G A      +    S                   Y   DVE   EL   L  L
Sbjct: 138 KK-----GHAAENWSKRPIPRSWLI----------------YAALDVELLIELADTLTAL 176

Query: 181 SDGERDLWLLDQTIN---------DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231
            + E  L   +                  +D+  + ++     Q  + L      +    
Sbjct: 177 LEREGKLAWAEAEFQHIIDCPPHHHEKTWLDVKGIRRMHGPQVQAARALFNKRELIAYRK 236

Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286
             +      L   L  +        +   + +IL H +   +  D+I  R + + 
Sbjct: 237 GIAPG--RVLSNKLLSLLAEKYP-TTAEDVDTILHHRSDPSMWADVI--RRSLAL 286


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWA-YAEQAVIT----------LCAYAWDDEPVK------ 43
           ++ + ID ET + +                +T             Y++ +  +       
Sbjct: 4   INFIAIDFETATGKRASICEAGICVVRNGEVTKTRSWLVRPQGNRYSYWNMQIHGIRPND 63

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLA 100
             D  E   + +++ +YL+D  ++ VAHN+ F+    +      G++ P   + C+   A
Sbjct: 64  TVDSPEFPEVWAEISEYLKDIPIL-VAHNAAFDVGCIRHSLELYGMEKPDITYYCSLRAA 122

Query: 101 R-TNGLP-SSLKNACLALNFS 119
           R       +SL   C      
Sbjct: 123 RKLYDFGCNSLDYLCDQFKIP 143


>gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 29/145 (20%)

Query: 3   KLFIDIETRSPQP------------------LPKVGVWAYAEQAVITLCAYAWDDEPVKL 44
              +DIET    P                  + K  ++       + + AYA   + V  
Sbjct: 7   YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYA---QSVHK 63

Query: 45  WDRTEQSAMPS--DLLQYLR--DETVMCVAHNSLFERILFKKTLG--IDIPS-KRWICTS 97
              ++    P   +++  +R   +  + V HN+ F+             +P    +I T 
Sbjct: 64  ISNSDIENAPELDEIISVVRKYSKDTIMVFHNAKFDLTFLDYAAKEVGQLPLDVYYIDTL 123

Query: 98  VLA-RTNGLPSSLKNACLALNFSEH 121
            ++    G    L++    +  S  
Sbjct: 124 DISKAVYGRRRKLESLAQEMKISHK 148


>gi|262278391|ref|ZP_06056176.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258742|gb|EEY77475.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAE--QAVI-------------TLCAYAWDDEPVKLW 45
           M  + +D ET +   LP    +A  E  +  +                  ++    V   
Sbjct: 1   MQAIILDTETHTLNGLPIEIAYAPIELNEGKLTLDKSKLFDQLYQVGAPISYAAMAVHHI 60

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101
             T+    P      L + T   + HN  ++     +  G+D+ + + ICT  LAR
Sbjct: 61  LETDLENQPHYKTFKLPESTTYIIGHNIDYDIAAIARC-GVDVSNIKPICTLALAR 115


>gi|194446652|ref|YP_002039328.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194405315|gb|ACF65537.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|198245956|ref|YP_002214050.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940472|gb|ACH77805.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326621794|gb|EGE28139.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|16763487|ref|NP_459102.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167989962|ref|ZP_02571062.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168243495|ref|ZP_02668427.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449638|ref|YP_002044066.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264857|ref|ZP_03164931.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16418595|gb|AAL19061.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194407942|gb|ACF68161.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197243112|gb|EDY25732.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205331321|gb|EDZ18085.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205337436|gb|EDZ24200.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261245330|emb|CBG23118.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267991769|gb|ACY86654.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156726|emb|CBW16200.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911067|dbj|BAJ35041.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222332|gb|EFX47404.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323128415|gb|ADX15845.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDHQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|296472378|gb|DAA14493.1| Werner syndrome [Bos taurus]
          Length = 744

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 35/231 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            DIE     P  K  +   A      L      +    L+  +  S  P  L   L +E 
Sbjct: 79  FDIE---WPPFKKGTLSRVA------LIQLCVAESKCYLFHISSMSGFPQGLKMLLENEA 129

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           +         ++    +   I++                   S+       N      + 
Sbjct: 130 IKKAGVGIEQDQWKLLRDFDINLK------------------SIVELTDVANEKLKCIET 171

Query: 126 EEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                L+   F K  +      C+  +     +    Y   D  A   ++++L  LSD  
Sbjct: 172 WSLNGLVKYLFGKQLLKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLANLSDPV 231

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +           +   I    V K    I++E   L E +   T G + + 
Sbjct: 232 QIFVK------SKEEEILPSDVKKQLTSISKEMMDLAERLPD-TFGKLENP 275


>gi|224581940|ref|YP_002635738.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224466467|gb|ACN44297.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|168262225|ref|ZP_02684198.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348911|gb|EDZ35542.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDHQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLART 102
            ++  +  + ++Y   +  + V HN  ++  +      +  LG     K +  T  + R 
Sbjct: 574 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKP-KFKTFYDTLDIYRR 630

Query: 103 N---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                +   L+N     +     +       +          +     T    ++   L 
Sbjct: 631 FYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVRAINEKIRET---SMERMALM 687

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            ++ K     +++L   L  +++ +R   L+   +N  G+ I         +      + 
Sbjct: 688 SKHLKAFTAISKKL-NELFQIAESKRPYELVACVMN--GFNIKSMYAGDENKEKLNRLRD 744

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMY 244
           L      L D    +      +   
Sbjct: 745 LYALFRDLDDKSKGNRDALLDIIRI 769


>gi|292655765|ref|YP_003535662.1| hypothetical protein HVO_1615 [Haloferax volcanii DS2]
 gi|291371980|gb|ADE04207.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 251

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 46/173 (26%), Gaps = 26/173 (15%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYL 61
             F DIET    P          E+  +T  ++  D E   L        + +D L +  
Sbjct: 84  TCFFDIETTGLSP----------ERDSVTTVSFYQDGETTTLV---SGEDLTADALREQF 130

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
            D  ++   + + F+    + +  + I            RT  L   LK           
Sbjct: 131 VDAKLIATFNGARFDVPFLETSFDVSIDVPHV-DLMYPCRTLDLTGGLKE---------- 179

Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
             + + G         G      +         A      Y + D      L 
Sbjct: 180 -IEKDVGIDRDRPDISGRDAVRLWREYERGDQSALDTLVSYNREDAVNLERLM 231


>gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 568

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 48/203 (23%), Gaps = 43/203 (21%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             L  D E      +   G         + L     +     L+       +P  L   L
Sbjct: 78  KVLGFDCE-----WVTVSGSRRP-----VALLQLCSNRGYCALFRLCCIRQIPKSLRDLL 127

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC-----TSVLARTNGLPSSLKNACLAL 116
            DE V+ V  +  ++     +  G+ +            T V           +     L
Sbjct: 128 ADEEVIKVGVDPGYDAQKLAQDYGVGV--ASTFDLRYLATMV-------GRKPEGLAK-L 177

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
           + S                           C+        +   EY   D     E+FK 
Sbjct: 178 SLSVLK--------------VTLDKHWRLSCSNWEAKDLTEKQIEYAANDAFVAVEIFKI 223

Query: 177 L----IPLSDGERDLWLLDQTIN 195
           L     P      D  ++   I 
Sbjct: 224 LAREFKPRLSWLSDFTIIKCRIE 246


>gi|168464359|ref|ZP_02698262.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200388730|ref|ZP_03215342.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|195632975|gb|EDX51429.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199605828|gb|EDZ04373.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|168234853|ref|ZP_02659911.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737454|ref|YP_002113115.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712956|gb|ACF92177.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291914|gb|EDY31264.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|167550719|ref|ZP_02344476.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324352|gb|EDZ12191.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|322615918|gb|EFY12835.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620703|gb|EFY17563.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623946|gb|EFY20783.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627394|gb|EFY24185.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630701|gb|EFY27465.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638079|gb|EFY34780.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640565|gb|EFY37216.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322656913|gb|EFY53199.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657376|gb|EFY53648.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663696|gb|EFY59896.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666529|gb|EFY62707.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672312|gb|EFY68424.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676376|gb|EFY72447.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679531|gb|EFY75576.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686140|gb|EFY82124.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194984|gb|EFZ80170.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200107|gb|EFZ85194.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201072|gb|EFZ86141.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209469|gb|EFZ94402.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212279|gb|EFZ97103.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216584|gb|EGA01310.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222477|gb|EGA06847.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225788|gb|EGA10008.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228671|gb|EGA12800.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236715|gb|EGA20791.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239784|gb|EGA23831.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242168|gb|EGA26197.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249407|gb|EGA33323.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252258|gb|EGA36109.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256651|gb|EGA40381.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261315|gb|EGA44902.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265505|gb|EGA49001.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271707|gb|EGA55125.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|207855610|ref|YP_002242261.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206707413|emb|CAR31686.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|204926848|ref|ZP_03218050.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323513|gb|EDZ08708.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|56412368|ref|YP_149443.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361305|ref|YP_002140940.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126625|gb|AAV76131.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197092780|emb|CAR58205.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKR 92
           + DD  V   D      +  + L +        VAHN+ F+        K  G +     
Sbjct: 506 SIDDSMVA--DAKSIEEILPEFLSFCE--GCSLVAHNAEFDVSFIEENAKRQGFETD-FT 560

Query: 93  WICTSVLARTNGLPSS---LKNACLALNFSEHL 122
            + T  +AR      +   L   C  LN  +  
Sbjct: 561 VLDTVQMARLLLTDLNKFKLNTVCKRLNIKQEH 593


>gi|212703983|ref|ZP_03312111.1| hypothetical protein DESPIG_02036 [Desulfovibrio piger ATCC 29098]
 gi|212672576|gb|EEB33059.1| hypothetical protein DESPIG_02036 [Desulfovibrio piger ATCC 29098]
          Length = 333

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            L  D+ETR  +   +VG W  A++      + A   +       T       +L   +R
Sbjct: 158 YLVFDVETR--RSAAEVGGWNRADR---MGVSIAVAYDSRADDFFTYTQEALPELFARMR 212

Query: 63  DETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNF 118
               + V  NS  F+  +       D+ +   +   +L R         SL N       
Sbjct: 213 -AAQLVVGFNSFRFDYAVLSAFAPFDLRALPGLD--LLRRVQDSLKYRVSLDNLG----- 264

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
                                  +      R            YC++DV+ TR L+
Sbjct: 265 --------------QATLDEPKSADGLQALRWWQEGRLDDIAAYCRKDVDLTRRLY 306


>gi|168820920|ref|ZP_02832920.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|238911155|ref|ZP_04654992.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|205342424|gb|EDZ29188.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084335|emb|CBY94128.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 16/120 (13%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDL---LQYL 61
           ID ET   Q               I    +     +            +   +     ++
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDRPISPQAMAIHRITEAMVADKPWI 64

Query: 62  RD------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115
            D       +   VAHN+ F+R +             WICT  LAR         N  L 
Sbjct: 65  EDVIPHYYGSEWYVAHNASFDRCVL------PEMPGEWICTMKLARRLWPGLKYSNMALY 118


>gi|289826177|ref|ZP_06545289.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  DE     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 42/173 (24%), Gaps = 12/173 (6%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSK--RWICTSVLARTNGL-- 105
             +  +  ++ +D   + VAHN+ F+            +P      I T   AR      
Sbjct: 491 KQVLEEFQEFCQDA--VLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEFARNLYPEY 548

Query: 106 -PSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162
               L             H     + +A          D                L    
Sbjct: 549 KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLAKLNLDLISPD 608

Query: 163 CKRDVEATRE-LFKRLIPLSDGERDLWLLDQTINDRGY-RIDLDLVLKLQELI 213
             +        ++ +          L  L  T    G  RI   ++   +E +
Sbjct: 609 SYKKARVKHATIYVKNQNGLKNMFKLVSLSNTQYFEGVPRIPRTVLDAHREGL 661


>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
 gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
          Length = 934

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 32/148 (21%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLC--AY---------------AWDD 39
             + +D+ET        +           E   I     ++                 D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 40  EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT 96
             VK     +   +   +++ L+      VAHN  F+        +  G        + T
Sbjct: 64  SMVKQAPLFQD--VAPMVVELLQ--GAAFVAHNVHFDWNFLTEELRWAGYTEVHCPKVDT 119

Query: 97  SVLARTNGL---PSSLKNACLALNFSEH 121
             LA+          L++          
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEHD 147


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 68  CVAHNSLFERILFKKT---LGIDIPSKRWICTSVLAR-TNGLP-SSLKNACLALNF 118
            V HN  ++  +  K+     +++P   + CT   +R    LP   L+N    L+ 
Sbjct: 83  IVGHNITYDLRVLTKSLQRYDLEVPEFNYCCTLTQSRKNLDLPSYKLENIAKKLHI 138


>gi|16759092|ref|NP_454709.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29140642|ref|NP_803984.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213418089|ref|ZP_03351159.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213857315|ref|ZP_03384286.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25288546|pir||AE0514 DNA polymerase II [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501382|emb|CAD01253.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136266|gb|AAO67833.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 783

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  DE     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|270263929|ref|ZP_06192197.1| DNA polymerase II [Serratia odorifera 4Rx13]
 gi|270042122|gb|EFA15218.1| DNA polymerase II [Serratia odorifera 4Rx13]
          Length = 787

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDL 57
           +  + +DIET +   L  + +     Q  + +   A         +L   T +  M   L
Sbjct: 152 LKMVSLDIETTAHGELYSIALEG-CGQRQVYMLGPANGGNEPLDFELEYCTSRPQMLERL 210

Query: 58  LQYLR--DETVMCVAHNS-LFERILFKKT 83
            Q+L   D   + +  N   F+  + +K 
Sbjct: 211 NQWLERHDPDAI-IGWNLVQFDLRVLQKH 238


>gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium]
          Length = 345

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 79/320 (24%), Gaps = 62/320 (19%)

Query: 3   KLFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57
           +L ID E     T  P                + L   A         D      + S L
Sbjct: 20  ELAIDTEFKRVNTYYPV---------------LCLVQIATKKN-TDCIDVLTLDDL-SPL 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              L  +  + + H++  +       L   +  K+   T + A     P+          
Sbjct: 63  FDKLYQDDCLWIVHSARQDIEAL-HYLSKQL-PKQLFDTQIAASLVNYPA---------- 110

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
             +           +    +       Y               EY   DV    + +++L
Sbjct: 111 --QISY------QALTESLQNVHLEKAYTRLDWTIRPLPDEAIEYALDDVRYLLKNYRQL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRI--------DLDLVLKLQELIAQERKKLDEDIVK-LT 228
               + E         I + G  +        D+    +  +  ++  KK      +   
Sbjct: 163 KTQLEVEEKS----TWIEEEGKSLLDINLYNPDIKDAWQRVKGFSRLAKKYQLKAAQLSA 218

Query: 229 DGIIRSSRQTYALRMYLFL------ITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNR 281
               ++ ++    +  L          G D +   +       L H          +   
Sbjct: 219 WREYQAKKKNKPRKWILSDDKLISYTLGKDKLSGKTNSLFNEFLGHHPHINSMSINVEKN 278

Query: 282 LASSGSAILKLNTLSEAVSS 301
              + +   K N L + +  
Sbjct: 279 KIVTKTEKSKKNELQKLIQK 298


>gi|213616459|ref|ZP_03372285.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 373

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  DE     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|242278289|ref|YP_002990418.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           S-methyltransferase [Desulfovibrio salexigens DSM 2638]
 gi|242121183|gb|ACS78879.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
           S-methyltransferase [Desulfovibrio salexigens DSM 2638]
          Length = 757

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
           +D+ET+    +     +A  + A I + A A + + V         A+ ++  + L    
Sbjct: 334 LDLETKLDPDIKSWMAFARQKCAEIRIIADAVEGKDV--------EAVLAENRRVLESRK 385

Query: 66  VMCVAHN 72
           +    HN
Sbjct: 386 ISPRVHN 392


>gi|213648384|ref|ZP_03378437.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 371

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLART 102
           D  +   +      ++ D   + VAHN+ F+          +G+   +   I T  LAR 
Sbjct: 482 DAPDVEEVLRQFYDWIGDS--VLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLELARF 539

Query: 103 NGL---PSSLKNACLALNFS 119
                    L   C   +  
Sbjct: 540 LYPDLKNHRLNTLCKKFDIE 559


>gi|145520595|ref|XP_001446153.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413630|emb|CAK78756.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1331

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 2   SKLFIDIETR---SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSD 56
           + + ID+E +       L ++GV    E   I      +D    K    D      M S 
Sbjct: 843 NYIGIDLEGQLRKGDIWLVQMGVM--VENLRIIFI---FDLMKAKYLEADLVFHEQMLSV 897

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96
           +   L DE +  V H+   +       +   I  +    T
Sbjct: 898 IRSILEDEGICKVFHDCKRDSQAL--HIN-QICPRNIADT 934


>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 223

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 29/187 (15%)

Query: 1   MSKLFIDIET----RSPQPLPKVGVWAY-------AEQAVITLCAYAWDDEPVKLWDRTE 49
           +  +  D ET         +  +G           ++   + L    ++ E VK+    +
Sbjct: 37  IRFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGIIQ 96

Query: 50  QSAM-----PSDLLQYLRD-ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLA 100
                       L ++L   +  + VAH++ F+  +  K L   G+     + + TS+L 
Sbjct: 97  NEKFEKLSELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLPKLKNKVLDTSILY 156

Query: 101 R-------TNGLP--SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151
           +               SL     A N          G A I       + S       + 
Sbjct: 157 KKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIFMKLLSRLKKNKDST 216

Query: 152 HVQAWQL 158
               ++L
Sbjct: 217 LKDIYKL 223


>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 188

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 29/137 (21%)

Query: 6   IDIETRSPQP----LPKVGVWAYAEQAVITLCAY--------AWDDEPVKL--------W 45
           IDIET    P    + ++G     +   I +  Y        +   E  K+         
Sbjct: 30  IDIETSGLNPEKNEILELGAVRVRDN--IVVAEYEQLIRPRKSISKEATKVNGLTKRMLI 87

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-- 103
           D      +  D   +L     + + HN  F+    +  L I     ++I T  LAR    
Sbjct: 88  DEPFVEDVIWDFKDFL--GKDVLIGHNIEFDLEFIRNQLPIR---NKYIDTLPLARKLLK 142

Query: 104 GLPSSLKNACLALNFSE 120
                L + C      E
Sbjct: 143 IKRHRLIDICHHYKIPE 159


>gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
 gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
          Length = 902

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 35/140 (25%), Gaps = 15/140 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL---ARTNG 104
             +  D+ Q L+    + VAHN  F+    KK      I    KR + T  L   A    
Sbjct: 72  KEIAHDIYQQLQ--ECVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVLDTLELFKIAFPTD 129

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L     A +           +               ++              +   
Sbjct: 130 KSYQLSELAEAHDI-PLNNAHRADEDATTTAQLMIKAFEKFE------QLPLDTLKQLYY 182

Query: 165 RDVEATRELFKRLIPLSDGE 184
              +   +L+  L  +    
Sbjct: 183 LSKDLKYDLYHILFEMVRQH 202


>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
 gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLA-- 100
           D  + S +  ++  YL +   + VAHN+ F+  + +       +D P   ++CT  LA  
Sbjct: 38  DEPDFSEIWREISTYLENN--LVVAHNASFDISVLRHVLDLYDLDYPQFDYLCTKKLAEK 95

Query: 101 -RTNGLPSSLKNACLALNFS 119
              +     LK+    L+  
Sbjct: 96  QWPHLDKYGLKSIAKFLDVK 115


>gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEEXRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 1421

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLW----DR 47
           S +  DIET         + ++G     +  ++   +          D  V+L     D 
Sbjct: 405 SFVVFDIETTGFSPQVDEITEIGAVKIVDGVIVDRFSQLVNPMIKIPDRVVELTGISNDF 464

Query: 48  TEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKK-TLGIDIP-SKRWICTSVLARTN 103
            +       ++    D  +  + VAHN+ F+    ++  L  ++  +   + T  LAR  
Sbjct: 465 VKDEPTIDKVIVDFNDFCKNSVLVAHNAGFDISFIRRDMLKYNLSFNFTVLDTLSLARAI 524

Query: 104 ---GLPSSLKNACLALNFS 119
                  +L      L  S
Sbjct: 525 IKDIKRFNLTALSKKLGVS 543


>gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 893

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 27/146 (18%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---IDIPSKRWICTSVL---ARTNGL 105
            +  D+ + L+D   + VAHN  F+    KK      I    K+ I T  L   A     
Sbjct: 73  EVAEDVYKQLKDS--VFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFKIAFPTDK 130

Query: 106 PSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
              L     A +                 K +I  F K                      
Sbjct: 131 SYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQK-------------FETLPLDTL 177

Query: 160 GEYCKRDVEATRELFKRLIPLSDGER 185
            +          +L+  L  +    +
Sbjct: 178 KQLYYLSKNLKYDLYHILFEMVRQYK 203


>gi|221128253|ref|XP_002154376.1| PREDICTED: similar to DNA polymerase gamma, partial [Hydra
           magnipapillata]
          Length = 543

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 20/254 (7%)

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--------GLPSSLKNACL 114
           ++  + + HN  F+R   ++   ++  + R++ T  L                S K+   
Sbjct: 235 NKKRLIIGHNVCFDRSFVREQYSLEASNLRFLDTLSLHVCVSGITNEQRNYMKS-KSDAK 293

Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC----TRANHVQAWQLFGEYCKRDVEAT 170
                  +  M     +   +C  SID    D     +  +  + +Q    YC  DV++T
Sbjct: 294 VHFDWMDVGAMNSLVKVYEFYCNKSIDKSSRDYFVTGSLQDIYENFQECVRYCAVDVQST 353

Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGY---RIDLDL---VLKLQELIAQERKKLDEDI 224
             +F  + P+        +    + + G     ID      + + + +  +  K++   +
Sbjct: 354 HAVFTSVWPMFCFHAPHPVTLLGMLEMGTSYLPIDESWNHYLEQAEFIYNKMAKQMRHSL 413

Query: 225 VKLTDGII-RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283
           + + D  +       Y    +L+ +               ++   +         LN L+
Sbjct: 414 MAVADEALKMIIDDKYKSDPWLWSMDWSIHKTAISKDNAVLIDKEDDVHAYIKNRLNHLS 473

Query: 284 SSGSAILKLNTLSE 297
                 L L     
Sbjct: 474 EKRRNQLHLPGYPN 487


>gi|205351437|ref|YP_002225238.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205271218|emb|CAR36006.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326626460|gb|EGE32803.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 783

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 248


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 76/308 (24%), Gaps = 89/308 (28%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCA-YAWDDEPV----------------K 43
           M+   +DIET             Y E+  IT  A Y +D E V                 
Sbjct: 1   MNYAILDIETTG---------GKYNEEG-ITEIAIYRFDGEKVVDQFCSLVNPERPIQPF 50

Query: 44  LWDRT--------EQSAMPSDLLQYLR-DETVMCVAHNSLFERILFKKTL---GIDIPSK 91
           + + T                  + +   +  + VAHN+ F+  +        G D   +
Sbjct: 51  VVNLTGINSDMLKNAPKFYEVAKRIVEITKDCILVAHNAQFDNRILTTEFDRLGYDFDLE 110

Query: 92  RWICTSVLARTNG---LPSSLKNACLALNFSEHL--------------TKMEEGKALIAR 134
              CT  L++         SL     +L                     KM   K     
Sbjct: 111 TL-CTVELSKKLIPDMPSYSLGKLVRSLGIPITDRHRAQGDAKATVTLFKMLLLKDTEKE 169

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLF---------------GEYCKRDVEATRELFKRLIP 179
             K ++   P        +   +                   Y  +     + L +    
Sbjct: 170 IIKAAVKKDPKRQIDTKLLDLIKQAPSETGVYYMHDTHGNILYIGKSKNIKKRLTQHFTN 229

Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
            +   +++                  +      I +   +L   + +         R   
Sbjct: 230 DNRKSKEM-----------------QLKVTSISIEKTGSELLALLEENDQIKRHKPRFNR 272

Query: 240 ALRMYLFL 247
           AL+  +F 
Sbjct: 273 ALKRSIFN 280


>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
 gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HANVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RTNGLP-SSLKNACLALNFS 119
                  P   L+     L   
Sbjct: 130 KKYMKQAPNHKLETLKRMLGIR 151


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLP- 106
             + ++   ++ D   + VAHN+ F+        + +G+       I T  L R      
Sbjct: 485 EQVLNEFHAFIGDA--VLVAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYPTL 542

Query: 107 --SSLKNACLALNFSEHL 122
               L   C   +     
Sbjct: 543 KNHRLNTLCKKFDIELVS 560


>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|297191335|ref|ZP_06908733.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720654|gb|EDY64562.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
          Length = 428

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 33/182 (18%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
               +   + Y ++A +       +      +          S L   L D     + H 
Sbjct: 67  VDAERASGYRYGQRAYLV--QLRREGAGTALVDPVGCPD--LSALGDALAD--TEWILHA 120

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL-ALNFSEHLTKMEEGKA 130
           +  +    ++   I +   R   T +  R  G P   L       L ++        G +
Sbjct: 121 ATQDLPCLRE---IGMVPARIFDTELAGRLGGFPRVGLGAMVESVLGYALEK-----GHS 172

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190
            +    +                + W     Y   DVE   +L   L    D +  L   
Sbjct: 173 AVDWSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLDWA 216

Query: 191 DQ 192
            Q
Sbjct: 217 HQ 218


>gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3]
 gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3]
          Length = 222

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTN---G 104
             +      ++ D  +  VAHN+ F++        ++G +   + + C+ ++AR      
Sbjct: 91  EEVMERFADFIADYNM--VAHNASFDQRFLDAELNSIGREYRGE-FACSMLIARRLYQEA 147

Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
               L +    +N+ +        +AL        +     +  + +H      F     
Sbjct: 148 PNHKLGSL---INYKQIKHDGVFHRALADSEMTADLWLVMLNDLKRDHNIQEPEFKLMQA 204

Query: 165 RDVEATRELFKRLIPL 180
              +    + K L   
Sbjct: 205 ITKQTKANVQKYLYNY 220


>gi|195147474|ref|XP_002014705.1| GL18808 [Drosophila persimilis]
 gi|194106658|gb|EDW28701.1| GL18808 [Drosophila persimilis]
          Length = 4542

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 59/199 (29%), Gaps = 16/199 (8%)

Query: 141  DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200
            ++     +  N    W+          +    ++  L  L     +          +   
Sbjct: 3782 NTSGLASSAQNLELRWKNVCSQSAERKQRILSIWNLLQSLIKQTAEHKNWLGKQETQLAG 3841

Query: 201  IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260
             + D     ++ + + +K+L   + +L    + + R        L + TG++  ++ + T
Sbjct: 3842 YERDHKSSGKQKLEERQKELRSKLDELDSQSV-NLRHLEQTYAKLTMGTGVEPENIQKLT 3900

Query: 261  LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320
            L             K ++            + + L +A+  D ++           T   
Sbjct: 3901 L-----------PTKVMLSKWRQL----TPRCHALLDAIDKDAKVLREFHTAQQEATQSL 3945

Query: 321  SGCVFQPQNLPRQERSEEI 339
            +      + LP     ++ 
Sbjct: 3946 TAIQKALEQLPSATAEDQQ 3964


>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
 gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +  DIET     +    +   A       IT   +   + +    ++ T  +++  ++ 
Sbjct: 422 YIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM- 480

Query: 59  QYLRDETV--------------MCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
             +   T+              + VAHN+ F+    +   ++LG+      ++ T  LAR
Sbjct: 481 -VMDSPTIDVVLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGLS-DEFVYLDTVALAR 538

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L     ALN S
Sbjct: 539 VLLPTLSKYKLNIVAKALNIS 559


>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis str. Al Hakam]
 gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
 gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus N315]
 gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus
           04-02981]
 gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
 gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
          Length = 897

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Ames]
 gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Sterne]
 gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
 gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Vollum]
 gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Australia 94]
 gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. Ames]
 gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           anthracis str. Sterne]
 gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
          Length = 934

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 26/145 (17%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QS 51
             + +D+ET        +           E   I     ++ +   ++            
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  AMPSDLLQYLRD---------ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVL 99
           +M         D         +    VAHN  F+        +  G        + T  L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARTNGL---PSSLKNACLALNFSEH 121
           A+          L++          
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|296472380|gb|DAA14495.1| Werner syndrome [Bos taurus]
          Length = 707

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 35/231 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            DIE     P  K  +   A      L      +    L+  +  S  P  L   L +E 
Sbjct: 79  FDIE---WPPFKKGTLSRVA------LIQLCVAESKCYLFHISSMSGFPQGLKMLLENEA 129

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
           +         ++    +   I++                   S+       N      + 
Sbjct: 130 IKKAGVGIEQDQWKLLRDFDINLK------------------SIVELTDVANEKLKCIET 171

Query: 126 EEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184
                L+   F K  +      C+  +     +    Y   D  A   ++++L  LSD  
Sbjct: 172 WSLNGLVKYLFGKQLLKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLANLSDPV 231

Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235
           +           +   I    V K    I++E   L E +   T G + + 
Sbjct: 232 QIFVK------SKEEEILPSDVKKQLTSISKEMMDLAERLPD-TFGKLENP 275


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 41/151 (27%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQS-AMPS-- 55
           M  +  DIET           ++     +I +  +   +  V  + +        +P   
Sbjct: 414 MEYVVFDIETTG---------FSKVRDKIIEISGFKIKNNIVIDQFYSLVNPEIDLPENI 464

Query: 56  ---------------DLLQYLRD-----ETVMCVAHNSLFERILF---KKTLGIDIPSKR 92
                           +LQ L D     +    VAHN+ F+        K L I  P   
Sbjct: 465 YLLTKIKNETLKNAPKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLLP 524

Query: 93  WICTSVLARTNGLP----SSLKNACLALNFS 119
            I T  L++          SLK         
Sbjct: 525 VIDTLALSQYYFSSFMKFFSLKRLAAKFKVK 555


>gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 784

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDYNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 397

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 58/222 (26%), Gaps = 37/222 (16%)

Query: 14  QPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72
               +   + Y ++A +       +      +          S L + L    V  V H 
Sbjct: 34  VDAERASGYRYGQRAYLV--QLRREGAGTALIDPVACPD--LSGLGEAL--SGVEWVLHA 87

Query: 73  SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL-ALNFSEHLTKMEEGKA 130
           +  +    ++   ID+   R   T +  R  G P   L       L +         G +
Sbjct: 88  ATQDLPCLRE---IDMVPTRIFDTELAGRLAGFPRVGLGAMVEGVLGYVLEK-----GHS 139

Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----ERD 186
            +    +                + W     Y   DVE   +L   L    D     E  
Sbjct: 140 AVDWSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWA 183

Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228
               D   +        D   +   +    R++    + ++ 
Sbjct: 184 RQEFDAIASAPPAEPRKDPWRRTSGMHKVRRRRQMAVVREMW 225


>gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu3]
          Length = 897

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|17531757|ref|NP_496283.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis
           elegans]
 gi|3874231|emb|CAA90108.1| C. elegans protein C14A4.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 24/176 (13%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
            +  +D+E           + +Y       L   +  DE   + D          L +  
Sbjct: 298 KEFAVDLE--------HHQMRSYLGLT--CLIQISTRDED-FIIDPFPIWDHVGMLNEPF 346

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120
            +  ++ V H S  + +  ++  G+ +       T V  +    P  SL           
Sbjct: 347 ANPRILKVFHGSDSDVLWLQRDYGVHV--VNLFDTYVAMKKLKYPKFSLAYL-------T 397

Query: 121 HLTKMEEGKALIA---RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173
                              +   ++         H   +       +   + T++L
Sbjct: 398 LRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDTKDL 453


>gi|213582276|ref|ZP_03364102.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 319

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  DE     +L     +  +   L
Sbjct: 150 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKL 208

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 209 NAWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 281

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 46/178 (25%), Gaps = 32/178 (17%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           L ID E              Y   A +++     ++    +   +      +   + L D
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNVFNKLLED 70

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             +  + H    +  +F                 + A   G           L++ +   
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPANVFDIQIAANICGF-------GKQLSYDDICY 121

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
           K+      I         +       ++          Y   DV+   ++++ L  + 
Sbjct: 122 KLI----GITIDKTHQKSNWLKRPITSD-------MLNYAMLDVKYLYKIYQELNNII 168


>gi|56413264|ref|YP_150339.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362190|ref|YP_002141827.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127521|gb|AAV77027.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093667|emb|CAR59137.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 371

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
 gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
          Length = 897

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAVDQLGLTY 251


>gi|166367637|ref|YP_001659910.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843]
 gi|166090010|dbj|BAG04718.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843]
          Length = 135

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 20/104 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY---AWD--DEPVKLWDRTEQSAMPSDL 57
            L++D E               ++   ++L      + D   E V + D  ++  +    
Sbjct: 22  ILWLDTE----------VADYDSKTPRLSLIQILADSTDLTGERVTILDVLDRPDLTDYF 71

Query: 58  L-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100
           + + +  + +  V HN+ ++        G     K+  CT  LA
Sbjct: 72  ITKIMLVDRIEKVFHNASYDCKFL----GGKSQVKKITCTLELA 111


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 11/72 (15%)

Query: 56  DLLQYLRD-ETVMC----VAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
           +L + L    ++      VAHN+ F+    K+      I+      I T  LA+      
Sbjct: 468 ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNLAKVLNPIY 527

Query: 106 -PSSLKNACLAL 116
               L      L
Sbjct: 528 RSYRLGEVASKL 539


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 36  AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKR 92
           +  DE V + D  ++  +     ++  D       HN  F+        +  G++  ++ 
Sbjct: 468 SITDEMVGVAD--DEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQP 523

Query: 93  WICTSVLARTNGL---PSSLKNACLALNF 118
            + T  ++R         +L +     N 
Sbjct: 524 VVDTLEVSRLLHPEQTRHTLDSLAKKYNV 552


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 47  RTEQSAMPSDLLQYLR--DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
                 +   L  +L       + VAHN+ ++    K      G   PS R + T+ LAR
Sbjct: 113 LLPAPPITEVLPSFLEFLPPDAVLVAHNAPYDVGFLKAACAAHGYRWPSPRVLDTAALAR 172

Query: 102 TNG-----LPSSLKNACLAL 116
                       L       
Sbjct: 173 RVLTRDEVPNRRLGTLAAYF 192


>gi|320583448|gb|EFW97661.1| DNA polymerase gamma [Pichia angusta DL-1]
          Length = 1141

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 8/163 (4%)

Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416
                  +++ I +  G   V AD+   E   +A + G+                   K+
Sbjct: 661 KSRLGSELKAMIQSPPGYCFVGADVDSEEL-WVASLVGDSVFKIHGGTAIGWMTLEGTKS 719

Query: 417 FNTPIDKVS----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472
             T +   +       R   KV      Y  G K   ++       L +      ++   
Sbjct: 720 EGTDLHSKTAKILGISRNDAKVFNYGRIYGAGVKFATSLLKKFNPALTEADARKTAS--- 776

Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515
           E +   +     +  +   F   + ++    E + +    K  
Sbjct: 777 ELYAATKGQSQTVNKRKMWFGGSESIVFNRLETIAEQEHPKTP 819



 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 585 SQLMRERTYGGKLTENIVQAISRD---ILCEGM---KNATKNGYDIVLTVHDEIVSETPD 638
            + +   T+        +Q+   D   +L   M       K    + +TVHDEI      
Sbjct: 831 KKNLHSNTFLPSRINWAIQSSGVDYLHLLVVSMEYLLKRYKVDARLCITVHDEIRYIVKK 890

Query: 639 TPYFSVGTLCSL 650
              +    +  +
Sbjct: 891 EQKYKCAMILQI 902


>gi|289804042|ref|ZP_06534671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 43

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 3/41 (7%)

Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673
            E       +V   +  LM         +PL  E    + +
Sbjct: 1   FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 39


>gi|161612434|ref|YP_001586399.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161361798|gb|ABX65566.1| hypothetical protein SPAB_00123 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL 57
           +  + +DIET     L  +G+     Q  + +   A  D+     +L     +  +   L
Sbjct: 119 LKWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKL 177

Query: 58  LQYLR--DETVMCVAHN-SLFERILFKKT---LGIDIPSKR 92
             +    D  V+ +  N   F+  + +K      I +   R
Sbjct: 178 NAWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGR 217


>gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 163

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 23/122 (18%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWA-YAEQAVIT-----LC-----AYAWDDEPVKLWDRT 48
           M     ID ET + Q      V         I      L       Y + +  V      
Sbjct: 1   MKDFAAIDFETANEQRTSVCSVGVVIVRDGEIVDHYYSLIRPEPEYYTYWNTRVHGLTLA 60

Query: 49  EQSAMP------SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           +    P       ++   +    +  VAHN  F+    K   +T  +D P   + CT   
Sbjct: 61  DTQDAPIFPVVWQEIAPRIE--GLPLVAHNKAFDESCLKAVFRTYCMDYPDYEFYCTLQA 118

Query: 100 AR 101
           +R
Sbjct: 119 SR 120


>gi|213052594|ref|ZP_03345472.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213419335|ref|ZP_03352401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426609|ref|ZP_03359359.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213609541|ref|ZP_03369367.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|289828970|ref|ZP_06546670.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
          Length = 371

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|169794713|ref|YP_001712506.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
 gi|169147640|emb|CAM85503.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
          Length = 245

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA 115
           + HN  ++    K+  G D    + ICT  +AR         +L      
Sbjct: 88  IGHNIDYDIEAVKRA-GADTTGIKSICTLAMARYLWPTLEAHNLTALAYH 136


>gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 277

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 24/122 (19%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQA-VITLCAYAWDDEPVKL------------ 44
             +  D ET         + ++G   Y E    +        ++   +            
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 45  WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSV 98
            D   Q  +  ++L    D  +  + VAHN+ F+     +        D+ + R   T  
Sbjct: 64  ADLLNQPTI-EEILPDFLDFIKGHLVVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTLA 122

Query: 99  LA 100
            +
Sbjct: 123 ES 124


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 11/72 (15%)

Query: 56  DLLQYLRD-ETVMC----VAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
           +L + L    ++      VAHN+ F+    K+      I+      I T  LA+      
Sbjct: 468 ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNLAKVLNPIY 527

Query: 106 -PSSLKNACLAL 116
               L      L
Sbjct: 528 RSYRLGEVASKL 539


>gi|161613674|ref|YP_001587639.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161363038|gb|ABX66806.1| hypothetical protein SPAB_01399 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616813|gb|EFY13721.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618052|gb|EFY14944.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625723|gb|EFY22542.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626173|gb|EFY22983.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633779|gb|EFY30519.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638933|gb|EFY35626.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640751|gb|EFY37401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644138|gb|EFY40683.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649210|gb|EFY45648.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655369|gb|EFY51677.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660875|gb|EFY57106.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662828|gb|EFY59035.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668012|gb|EFY64171.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674226|gb|EFY70320.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675419|gb|EFY71493.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683166|gb|EFY79182.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686859|gb|EFY82837.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195248|gb|EFZ80428.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200159|gb|EFZ85245.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203843|gb|EFZ88861.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207397|gb|EFZ92345.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213750|gb|EFZ98532.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217380|gb|EGA02099.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220925|gb|EGA05358.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224700|gb|EGA08971.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231403|gb|EGA15516.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235843|gb|EGA19922.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240412|gb|EGA24455.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245305|gb|EGA29305.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246673|gb|EGA30645.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253527|gb|EGA37355.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263330|gb|EGA46866.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266778|gb|EGA50264.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268984|gb|EGA52440.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 371

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 8/74 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP- 106
             +     ++      + VAHN+ F+           GI       + T  LAR      
Sbjct: 63  EVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGIPKAKNAVVDTLELARFLYPHF 120

Query: 107 --SSLKNACLALNF 118
               L       N 
Sbjct: 121 KNHRLNTLTKKFNI 134


>gi|323512647|gb|ADX88101.1| DNA polymerase [Vibrio phage ICP1_2006_D]
 gi|323512875|gb|ADX88328.1| DNA polymerase [Vibrio phage ICP1_2006_C]
 gi|323513103|gb|ADX88555.1| DNA polymerase [Vibrio phage ICP1_2006_B]
 gi|323513330|gb|ADX88781.1| DNA polymerase [Vibrio phage ICP1_2006_A]
 gi|323513557|gb|ADX89007.1| DNA polymerase [Vibrio phage ICP1_2005_A]
          Length = 903

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 46/217 (21%)

Query: 70  AHNS-LFERILFKKTLG----------IDIPSKRWICTSVLARTN--------------- 103
             N   F+ + F   LG          I+    R   T  ++R                 
Sbjct: 87  CQNLEGFDMLAFSHILGTKYEKIPVEKINGKEIRVFDTLSMSRGLYPDRPLPRGCPAKVK 146

Query: 104 ---------GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                      P SL+   + +   +   +  +G  L     +   D    +        
Sbjct: 147 NPQGGKAKSIGPHSLEAWGVKVANKKVAIEDWKGLPLWKYVDRVWEDVIINELQWNA--- 203

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             +   +   + V+    L   L+           L Q   ++G     D  L+L + I 
Sbjct: 204 LIKEMQDGKDKGVDWKMALKHNLLAD--------HLMQVQEEQGVVFREDKALELVDKID 255

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           Q  K+++E++            +  +     F  +G 
Sbjct: 256 QMMKEIEEEVEPKLPPKRVPKSKEPSFPANPFDKSGK 292


>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 200

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 6   IDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRT-------EQS 51
           ID+ET       + + ++    Y     +   +     +      + + T         +
Sbjct: 18  IDLETTGRSNKFEDITELSAIKYRNYKQVDAFSTLVKPDNSILPFVVELTGITEEMVSDA 77

Query: 52  AMPSDLLQYLRD--ETVMCVAHNSLFER-ILFKKTL---GIDIPSKRWICTSVLARTNG- 104
                +++   D   T + + HN +F+  +++   L   G+ +    ++ T  ++R    
Sbjct: 78  PKIDQVIKQFVDFIGTDVILGHNVMFDYGLVYDAYLATVGLRMH-NDYVDTLRVSRLLNK 136

Query: 105 --LPSSLKNACLALNFS 119
                 L+  C   +  
Sbjct: 137 DSKNHKLETLCAYFDVE 153


>gi|312912807|dbj|BAJ36781.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224451|gb|EFX49514.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 371

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 62

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 63  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 116

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 117 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 162

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 163 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 212

Query: 238 TYALRMY 244
              L  +
Sbjct: 213 LQLLADW 219


>gi|195156982|ref|XP_002019375.1| GL12271 [Drosophila persimilis]
 gi|194115966|gb|EDW38009.1| GL12271 [Drosophila persimilis]
          Length = 578

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 25/134 (18%)

Query: 52  AMPSDLLQYLRDETVMCVA---HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
            +P DL   L DE V+ V     +   +        G+ +           A T      
Sbjct: 114 QIPKDLRDLLEDEAVIKVGVAPQD---DAKKLAHDYGVGV-----------ASTLD---- 155

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168
           L+   +             GK            +    C+     Q      +Y   D  
Sbjct: 156 LRFLAVMAGHKP----EGLGKLAKTHVDFVLDKNWRLACSNWEAKQLETSQIDYAANDAL 211

Query: 169 ATRELFKRLIPLSD 182
           A   +F++L    +
Sbjct: 212 AAVAIFQKLSSDLE 225


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 55/206 (26%), Gaps = 19/206 (9%)

Query: 48  TEQSAMPSDLLQYLRD-ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLART 102
                    L  +L   +  + V HN  F+  +     ++        K +  T  +AR 
Sbjct: 556 ENGENKKVVLKDFLEFIKDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLDIARR 615

Query: 103 NGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                    L+      N     +       L  +    ++       T  N +  +  +
Sbjct: 616 FYPSLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRMVVYGKY 675

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +            F+ +       + L  +    +  G  ++   + ++ +    +   
Sbjct: 676 IKK-----------FQPIYKEITNLKKLTYIKNPKDIIGEIVNKTKIKEIYKDQYIKINN 724

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYL 245
           L E  V   +   +       L   L
Sbjct: 725 LREFFVIAKEIENKEISSRDNLIELL 750


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 56/206 (27%), Gaps = 19/206 (9%)

Query: 48  TEQSAMPSDLLQYLRD-ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLAR- 101
                    L  +L   +  + V HN  F+  +     ++        K +  T  +AR 
Sbjct: 556 ENGENKKVVLKDFLEFIKDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLDIARR 615

Query: 102 -TNGLP-SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
               L    L+      N     +       L  +    ++       T  N +  +  +
Sbjct: 616 FYPNLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRMVVYGKY 675

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +            F+ +       + L  +    +  G  ++   + ++ +    +   
Sbjct: 676 IKK-----------FQPIYKEITNLKKLTYIKNPKDIIGEIVNKTKIKEIYKDQYIKINN 724

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYL 245
           L E  V   +   +       L   L
Sbjct: 725 LREFFVIAKEIENKEISSRDNLIELL 750


>gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 177

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 21/140 (15%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAY-AEQAVIT-----LC--AYAWDDEPVKLW-----DR 47
           M+   +D ET +  P     +         I      +      +D   +++      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDGRNIRVHGITAEDV 60

Query: 48  TEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWI--CTSVLART 102
                M      ++ L    ++  AHN+ F+  + +K+L   +IP+  +    T   ++ 
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSSLKNACLALNFS 119
                    L     ALN +
Sbjct: 121 FEPDLPNHKLDTVSEALNIN 140


>gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
 gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 35/152 (23%), Gaps = 47/152 (30%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC-AYAWDDEPVK--LWDRTEQS------- 51
           S +  DIET    P          E   I    A    +  V        E         
Sbjct: 4   SYVAFDIETTGLSP----------EHNEIIEIGALKVREGKVVDRFIRFIEPEAGIPPMI 53

Query: 52  ------------------AMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPS 90
                              +  + L++   +    + HN  F+    K   K LG     
Sbjct: 54  TQLTGITNDMVEGAGNCGEVLPEFLEFCERD--TLIGHNVQFDFSFVKTKAKELGYTYDH 111

Query: 91  KRWICTSVLARTNG---LPSSLKNACLALNFS 119
                T  +A+          L   C   +  
Sbjct: 112 MGI-DTLKIAKVVHADLPSRKLGALCEYYHIE 142


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L   T + VAHN+ F+    K     LG+  P    I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL--HTKVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
 gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
          Length = 184

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 67  MCVAHNSLFERILF---KKTLGIDIPSKRWICT-SVLARTNG-LPSSLKNACLALNFS 119
             VAHN+ F+  +     K+L ID PS  + C+  +  RT       LK+     +  
Sbjct: 84  PVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQLAKRTINAYRYGLKHLMNHYHLD 141


>gi|289811845|ref|ZP_06542474.1| hypothetical protein Salmonellaentericaenterica_49102 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 24

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 602 VQAISRDILCEGMKNATK 619
           +Q  + DI+   M     
Sbjct: 1   MQGTAADIIKRAMIAVDA 18


>gi|260889283|ref|ZP_05900546.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860694|gb|EEX75194.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 168

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 33/135 (24%), Gaps = 10/135 (7%)

Query: 86  IDIPSKRWICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSID 141
             I    +    +     G   SL+                 + +  K    +      D
Sbjct: 40  FGIKCTEYFDILLARYVLG-TESLQEIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSD 98

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
               +       + + ++            E F  +    +    L  +   + + G +I
Sbjct: 99  DVVCE---FLSKRTFFIYKLETIFRNRLQNEQFLNIFDKLES--RLIPVLAQMEETGIKI 153

Query: 202 DLDLVLKLQELIAQE 216
           D     +    + ++
Sbjct: 154 DKKYFSEFHNELEEK 168


>gi|254885185|ref|ZP_05257895.1| RepA [Bacteroides sp. 4_3_47FAA]
 gi|254837978|gb|EET18287.1| RepA [Bacteroides sp. 4_3_47FAA]
          Length = 177

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 10/120 (8%)

Query: 97  SVLA---RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
            +++       +  SL N    L       K + GK  I  F +  +  P       +  
Sbjct: 1   MLMSGQVYPLDI--SLDNLKERLGIPADKYKDKNGKDRIDNFEERVLK-PAKAALDESCP 57

Query: 154 QAWQLFGEY----CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209
             +           KR        +    P    E       Q      ++ID  +   L
Sbjct: 58  YTFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEVKELQAKVTARHQIDSHVYEYL 117


>gi|124441805|gb|ABN11517.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168]
 gi|124441807|gb|ABN11518.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|124441815|gb|ABN11522.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441817|gb|ABN11523.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441819|gb|ABN11524.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441821|gb|ABN11525.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|124441823|gb|ABN11526.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441825|gb|ABN11527.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441827|gb|ABN11528.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441829|gb|ABN11529.1| ATP-dependent helicase [Bacillus subtilis]
          Length = 604

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 37/144 (25%), Gaps = 19/144 (13%)

Query: 55  SDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL---PSS 108
            ++ Q L  +    VAHN  F+    K  L   G  +P    + T  L+R          
Sbjct: 2   EEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGFEGYK 59

Query: 109 LKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
           L      L              E   LI       +   PY           QL      
Sbjct: 60  LTELSEELQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY-------PTLKQLRRLSQH 112

Query: 165 RDVEATRELFKRLIPLSDGERDLW 188
              + T  L   +      E   +
Sbjct: 113 FISDLTHLLDMFINENRHTEIPGY 136


>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
 gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
          Length = 237

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 33/148 (22%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLC---------------AYAWDDEPVKLWD 46
            ++ +D ET    P  K G     E   + L                  + ++E + +  
Sbjct: 4   RQIVLDTETTGIDP--KQG-HRIIEIGCVELVNRRLTGNNFHVYINPQRSIEEEAIDVHG 60

Query: 47  RTE----QSAMPSDLLQYLRD--ETVMCVAHNSLFE-------RILFKKTLGIDIPSKRW 93
            T        +  D+ Q   D  +    V HN+ F+         L  +         + 
Sbjct: 61  ITNEFLRDKPLYRDIAQEFFDYIKGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120

Query: 94  ICTSVLARTNGLPS--SLKNACLALNFS 119
           + T  +AR        +L   C   +  
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDID 148


>gi|118616828|ref|YP_905160.1| hypothetical protein MUL_1100 [Mycobacterium ulcerans Agy99]
 gi|118568938|gb|ABL03689.1| conserved secreted protein [Mycobacterium ulcerans Agy99]
          Length = 550

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 25/164 (15%)

Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581
            DL       +         R+      ++   +R       + RR     ++ +   + 
Sbjct: 188 DDLVATVRTELAAPDIARRNRLRAWHAGLLLAGQRFNRDAAGAGRRARVDGLREERGSVL 247

Query: 582 TATSQ--LMRERTYGGKLTENIVQ---------AISR-----DILCEGMKNATK----NG 621
               Q    R     G++ +  VQ         A  R     DI     +          
Sbjct: 248 QRRRQDRTGRTIALRGQIQQARVQLCYFARSRCASVRTELQEDIAGLARQRLADFQSYAR 307

Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665
             I     DEIV+E  D     +  +   M+    +    PL A
Sbjct: 308 GRI-----DEIVTEVGDGITAQLVEVSREMSLPVDFPPADPLPA 346


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLART 102
            ++  +  + ++Y   +  + V HN  ++  +      +  LG     K +  T  + R 
Sbjct: 568 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKP-KFKTFYDTLDIYRR 624

Query: 103 N---GLPSSLKNACLALNFSEHLTKM 125
                +   L+N     +     +  
Sbjct: 625 FYPGNINYKLENLSKVYDTKHKPSHD 650


>gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
          Length = 897

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 48/196 (24%), Gaps = 33/196 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238

Query: 238 TYALRMYLFLITGIDL 253
              L        G+  
Sbjct: 239 ---LYSKAIDQLGLTY 251


>gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 375

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 121 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 166

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 167 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 216

Query: 238 TYALRMY 244
              L  +
Sbjct: 217 LQLLADW 223


>gi|83950653|ref|ZP_00959386.1| hypothetical protein ISM_06125 [Roseovarius nubinhibens ISM]
 gi|83838552|gb|EAP77848.1| hypothetical protein ISM_06125 [Roseovarius nubinhibens ISM]
          Length = 446

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 2/43 (4%)

Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649
            +     M +  +      L VHD ++     +       +  
Sbjct: 370 AECFLAAMLSLHEAKSIPSLPVHDSLI--VRQSDVHIAKEILE 410


>gi|323513790|gb|ADX89239.1| DNA polymerase [Vibrio phage ICP1_2001_A]
 gi|323514018|gb|ADX89466.1| DNA polymerase [Vibrio phage ICP1_2004_A]
          Length = 903

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 46/217 (21%)

Query: 70  AHNS-LFERILFKKTLG----------IDIPSKRWICTSVLARTN--------------- 103
             N   F+ + F   LG          I+    R   T  ++R                 
Sbjct: 87  CQNLEGFDMLAFSHILGTKYEKIPVEKINGKEIRVFDTLSMSRGLYPDRPLPRGCPAKVK 146

Query: 104 ---------GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                      P SL+   + +   +   +  +G  L     +   D    +        
Sbjct: 147 NPQGGKAKSIGPHSLEAWGVKVANKKVAIEDWKGLPLWKYVDRVWEDVIINELQWNA--- 203

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             +   +   + V+    L   L+           L Q   ++G     D  L+L + I 
Sbjct: 204 LIKEMQDGKDKGVDWKMALKHNLLAD--------HLMQVQEEQGVVFREDKALELVDKID 255

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           Q  K+++E++            +  +     F  +G 
Sbjct: 256 QMMKEIEEEVEPKLPPKRVPKSKEPSFPANPFDKSGK 292


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLART 102
            E+  +  + ++Y   +  + V HN  ++  +      +  LG     K +  T  + R 
Sbjct: 568 EEKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKP-KFKTFYDTLDIYRR 624

Query: 103 N---GLPSSLKNACLALNFSEHLTKM 125
                +   L+N     +     +  
Sbjct: 625 FYPGNINYKLENLSKVYDTKHKPSHD 650


>gi|325171024|ref|YP_004250999.1| DNA polymerase [Vibrio phage ICP1]
 gi|323512419|gb|ADX87874.1| DNA polymerase [Vibrio phage ICP1]
          Length = 903

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 46/217 (21%)

Query: 70  AHNS-LFERILFKKTLG----------IDIPSKRWICTSVLARTN--------------- 103
             N   F+ + F   LG          I+    R   T  ++R                 
Sbjct: 87  CQNLEGFDMLAFSHILGTKYEKIPVEKINGKEIRVFDTLSMSRGLYPDRPLPRGCPAKVK 146

Query: 104 ---------GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154
                      P SL+   + +   +   +  +G  L     +   D    +        
Sbjct: 147 NPQGGKAKSIGPHSLEAWGVKVANKKVAIEDWKGLPLWKYVDRVWEDVIINELQWNA--- 203

Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214
             +   +   + V+    L   L+           L Q   ++G     D  L+L + I 
Sbjct: 204 LIKEMQDGKDKGVDWKMALKHNLLAD--------HLMQVQEEQGVVFREDKALELVDKID 255

Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251
           Q  K+++E++            +  +     F  +G 
Sbjct: 256 QMMKEIEEEVEPKLPPKRVPKSKEPSFPANPFDKSGK 292


>gi|296126676|ref|YP_003633928.1| exonuclease [Brachyspira murdochii DSM 12563]
 gi|296018492|gb|ADG71729.1| exonuclease [Brachyspira murdochii DSM 12563]
          Length = 287

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 24/120 (20%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61
             +F+DIET         G+        +  C   +D + +K++          + L Y+
Sbjct: 88  KIVFLDIETT--------GIKPSKADVTVIGC---YDGKEMKVFVHGRNEN---EFLDYI 133

Query: 62  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121
           ++ +++C  + S F+    ++     I   +            L   LK+        + 
Sbjct: 134 KNYSIVCTFNGSCFDIPFLERYFATTIKCAQI----------DLRFVLKDLGYTGGLKKI 183


>gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 375

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 121 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 166

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 167 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 216

Query: 238 TYALRMY 244
              L  +
Sbjct: 217 LQLLADW 223


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIR 148


>gi|145630436|ref|ZP_01786217.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|144984171|gb|EDJ91608.1| ribonuclease D [Haemophilus influenzae R3021]
          Length = 273

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 63/212 (29%), Gaps = 9/212 (4%)

Query: 94  ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153
           I T ++AR  GL +S       L       ++++G        +   D            
Sbjct: 2   IDTQIMARFIGLGAS-AGLAK-LAQQYLNIEIDKGATRTNWIKRPLSDIQLQ----YAAG 55

Query: 154 QAWQLFGEYCKRDVEATRELFKR-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212
             W L   Y   + E  +  +++ +    +         Q  +     +D+    KL  L
Sbjct: 56  DVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAKTHKLQERDSEKAYLDIPNAWKLNPL 115

Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272
                + L +    +      +         +L+     +    +   L+  L+ + +  
Sbjct: 116 ELSRLRILAQWRQNVAIERDLAL-SYIVKSEHLW-KVAKNNPRNTSEMLEMGLTENEVRV 173

Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304
             K ++     +   +        E +S D R
Sbjct: 174 RGKKILQLLAQARRISSNDYPKPIERISEDPR 205


>gi|311875216|emb|CBX44475.1| DNA polymerase A, part A [Erwinia phage phiEa1H]
 gi|311875337|emb|CBX45078.1| DNA polymerase A, part A [Erwinia phage phiEa100]
          Length = 621

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 72/304 (23%), Gaps = 36/304 (11%)

Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169
           ++    L           G     +             T+ +   A  +  ++       
Sbjct: 300 EDCAK-LGLFPLSVSDFAGVERKGK----RKTVWGNKLTKKDGGWAAAVQKDFPH----- 349

Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL--DEDIVKL 227
                               +D    +     + D V ++         +    E     
Sbjct: 350 -LRGNSNDTDPLVKVGPYCPVDF---EDIPLGNRDTVKQVLYGFGWRGVEFNDTEQDHMD 405

Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL---AKDLILNRLAS 284
             G          +          ++    +   +  L  +    L      ++  +   
Sbjct: 406 EFGEWPKPWSGK-INEKSIEAWKKNMEAKGKKVPEWCLGIARWYILSSRRNQILNYKDQI 464

Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344
                    +L       G+ RG      A+ +        +   + ++  S     +  
Sbjct: 465 KYDQTGIWPSL-----PGGKKRGCRGILPAAFSRELGITATRFYEIYKRWPSLPEDGEWR 519

Query: 345 QAL-----------NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393
                          R   + +        +R   IAS GKK++  D AG+E RVLA   
Sbjct: 520 VPAIAISIGTSTFRMRHRVLVNIPSRGLYPLRDLFIASKGKKVLGCDGAGLELRVLAHFM 579

Query: 394 GEDW 397
            +  
Sbjct: 580 NDPE 583


>gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 897

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 45/180 (25%), Gaps = 30/180 (16%)

Query: 64  ETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSV---LARTNGLPSSLKNACLALN 117
           +  + VAHN  F+    KK      I    K+ I T     +A        L     A  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
                         I        D                 F ++ K  ++  ++L+   
Sbjct: 143 --------------ITLANAHRADED----AATTAKLMILAFEKFEKLPLDTLKQLY--- 181

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
                 +    L D          D   + K  E   Q   +   D  K T     S + 
Sbjct: 182 --YLSKQLKYDLYDIFFEMVRQY-DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKS 238


>gi|229472559|gb|ACQ72794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 57/265 (21%), Gaps = 99/265 (37%)

Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432
           G  +V ADLAGIE R+LA          A  +G            +          R + 
Sbjct: 1   GYVMVGADLAGIELRMLAHY-------LARYDGGRYGDVLLNGDIHQENADKIGISRRLV 53

Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492
           K +  A  Y  G K            L   +                             
Sbjct: 54  KTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA-------------------------- 84

Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552
                      + +++A+     G+ +L   +                            
Sbjct: 85  ---------KGKEIRQAYMDAIPGLEKLVTAVKSKAE----------------------- 112

Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612
                 +I L   RR                            K    ++Q  +  +   
Sbjct: 113 ----SGYIQLCDGRRCPVDGSH---------------------KALNYLLQGSAGCVAKL 147

Query: 613 GM------KNATKNGYDIVLTVHDE 631
            M          +     +  +HDE
Sbjct: 148 WMVHTHNVIKLNQIKAYQLAFIHDE 172


>gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 255

 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 17/110 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAV--ITL-------CAYAWDDEPVKLW---DRTEQSAM 53
           +D ET       ++ +          I L          +     V      D     + 
Sbjct: 45  LDTETTGLSETAQL-IEICILDFEGNILLNERVKPSVKVSKGAREVHGIKARDLKSCRSW 103

Query: 54  PSDLLQYLR-DETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           P     Y+        VA+N+ F+R +     +   + +  ++W C  + 
Sbjct: 104 PDVYRDYVEVTAGKNIVAYNAKFDRRIITQTCRAFNLTMKKRKWYCLMLA 153


>gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
          Length = 375

 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 66

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S   A     
Sbjct: 67  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLSWGFAS---- 120

Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177
               + +   G AL                T        +   EY   DV     + K+L
Sbjct: 121 ----MVEEYTGVALDKSES----------RTDWLARPLSERQCEYAAADVWYLLPIAKKL 166

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
             + + E   WL           +D   +++ +    Q  ++   DI        R    
Sbjct: 167 --MIETEAAGWL--------PAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLAC 216

Query: 238 TYALRMY 244
              L  +
Sbjct: 217 LQLLADW 223


>gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23]
 gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 26/143 (18%)

Query: 1   MSKLF-IDIETRSPQPLPKVGVWA-YAEQAVIT-----LCA-----YAWDDEPVKLWDRT 48
           M     ID ET + +      V         I      L       Y +    V    R 
Sbjct: 1   MKDFAAIDFETANNERTSVCSVGVVIVRDGEIVDSFYSLIQPEPNYYNYWCSQVHGLTRQ 60

Query: 49  EQSAMP------SDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVL 99
           +    P        +   +    +  VAHN  F+    K   +   +D P  ++ CT V 
Sbjct: 61  DTEEAPIFPEVWKQIEPMIE--GLPLVAHNKAFDESCLKAVFRCYQMDYPDYQFYCTCVA 118

Query: 100 AR---TNGLPSSLKNACLALNFS 119
           +R    N     L        + 
Sbjct: 119 SRKAFPNAANHQLHTISKLCGYE 141


>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
 gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
          Length = 458

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 40/147 (27%)

Query: 2   SKLFIDIETRS----PQP--------------LPKVGVWAYA-------EQAVITLCAYA 36
            +L +D ET                       L    +  Y        +   I   +  
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENIHGISDN 290

Query: 37  WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDI--PSK 91
           +  +     D          L  YL  +    +AHN+ F+        +  G+       
Sbjct: 291 FLKDKPLYADIA------DTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVC 342

Query: 92  RWICTSVLARTNGLPS--SLKNACLAL 116
               T  LA++       SL       
Sbjct: 343 EVTDTLALAKSKHPGQKNSLDALVRRY 369


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 46  DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDI-PSKRWICTSVL 99
           D+ + SA+  + + ++  +    + HN+ F+         K    I+         T  +
Sbjct: 77  DKPDFSAIAQEFIDFI--KGAELIIHNAPFDIGFMDYEFKKHNFNINTADICLITDTLQM 134

Query: 100 AR--TNGLPSSLKNACLALNFSEHL 122
           AR    G  +SL   C  LN     
Sbjct: 135 ARQMYPGKRNSLDALCDRLNIDNSK 159


>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 246

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWI----CTSVLARTN- 103
            +  + L Y+RD     V HN+ F+        G+   DIP          +  LAR   
Sbjct: 84  DVVDEFLDYIRDAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMF 141

Query: 104 -GLPSSLKNACLALNFSEHL 122
            G  +SL   C         
Sbjct: 142 PGKRNSLDALCSRYEIDNSK 161


>gi|197294333|ref|YP_001798874.1| hypothetical protein PAa_0204 [Candidatus Phytoplasma australiense]
 gi|171853660|emb|CAM11539.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense]
          Length = 1164

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 17/182 (9%)

Query: 98   VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157
            + A      ++       LN  E   K  +GK +       +              Q  Q
Sbjct: 934  IQAELIKNGNADDALVKQLNHKEAQIKELKGK-INTLEANETKLQTIIKQKDEEIKQLRQ 992

Query: 158  LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217
               E  ++ ++ T E+   +         +  L+  I           +      +  + 
Sbjct: 993  KVQEQAEQIIKLTTEIENNIEIFKQQAMKIQQLEGAI---------AGLEGASGSLGSDN 1043

Query: 218  KKLDEDIVKLTDGIIRSSRQTYALRMYLFLI----TGIDLVDMSEGTLKSILSHSNITQL 273
            K+L  +I KL D +        A +  L        G +L   ++ T    L        
Sbjct: 1044 KELLHEINKLKDQLEAEKDAHKATKERLEEKIVTLNGKNLNLTNKSTE---LKEKEKHWE 1100

Query: 274  AK 275
            A 
Sbjct: 1101 AA 1102


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 62/204 (30%), Gaps = 15/204 (7%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTN 103
            ++  +  + ++Y   +  + V HN  ++  +     +++       K +  T  + R  
Sbjct: 574 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTLDIYRRF 631

Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               +   L+N     +     +       +          +     T    ++   L  
Sbjct: 632 YPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVRAINEKIRET---SMERMALMS 688

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           ++ K     +++L   L  +++ +R   L+   +N  G+ I         +      + L
Sbjct: 689 KHLKAFTAISKKL-NELFQIAESKRPYELVACVMN--GFNIKSMYAGDENKEKLNRLRDL 745

Query: 221 DEDIVKLTDGIIRSSRQTYALRMY 244
                 L D    +      +   
Sbjct: 746 YALFRDLDDKSKGNRDALLDIIRI 769


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +  DIET     +    +   A       IT   +   + +    ++ T  +++  ++ 
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM- 541

Query: 59  QYLRDETV--------------MCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
             +   T+              + VAHN+ F+    +   ++LG+      ++ T  LAR
Sbjct: 542 -VMDSPTIDVVLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGLS-DEFVYLDTVALAR 599

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L     ALN S
Sbjct: 600 VLLPTLSKYKLNIVAKALNIS 620


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYA---EQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLL 58
            +  DIET     +    +   A       IT   +   + +    ++ T  +++  ++ 
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM- 541

Query: 59  QYLRDETV--------------MCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLAR 101
             +   T+              + VAHN+ F+    +   ++LG+      ++ T  LAR
Sbjct: 542 -VMDSPTIDVVLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGLS-DEFVYLDTVALAR 599

Query: 102 TNGLPSS---LKNACLALNFS 119
                 S   L     ALN S
Sbjct: 600 VLLPTLSKYKLNIVAKALNIS 620


>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens FZB42]
 gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
          Length = 928

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGL-- 105
            A+  ++   L  +    VAHN  F+    +  L   G ++P    + T  L+R      
Sbjct: 73  EAVAEEIFHLL--DGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSSLKNACLALNFSEH 121
               L   C  LN    
Sbjct: 131 EGYKLGELCAELNIVHD 147


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 56/231 (24%), Gaps = 29/231 (12%)

Query: 26  EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL--RDETVMCVAHNSLFERIL---- 79
           +   +   + A+           E    P+ +LQ      +  + V HN  ++  +    
Sbjct: 541 QSEEVHGFSDAY---------LKEHGEEPAIVLQAFKEFSKNAIIVGHNVNYDVTIFTNE 591

Query: 80  FKKTLGIDIPSKRWICTSVLAR--TNGLP-SSLKNACLAL--NFSEHLTKMEEGKALIAR 134
             +    +   K    T  + R     LP   L         N       M++  A    
Sbjct: 592 LARHNLGNPEFKAIYDTLDIYRRFYPNLPNHKLGFLASEFPINHEPTHNAMDDILATSQL 651

Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
                 ++     T                    AT          +  E    LL   +
Sbjct: 652 LIYAVKENIVPTTTGRMVAINKYKAAFTNIASQMATLR------RKAYTELPTQLLAYIM 705

Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           N  G     +      E+   E  +    I++  D           L   L
Sbjct: 706 NQMGVL---EYYKSHGEVAKVEHIRDLYRIMEKLDAAYEGPAGLARLNQIL 753


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 55/206 (26%), Gaps = 19/206 (9%)

Query: 48  TEQSAMPSDLLQYLRD-ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLART 102
                    L  +L   +  + V HN  F+  +     ++        K +  T  +AR 
Sbjct: 556 ENGENKKVVLKDFLEFIKDTVIVGHNVTFDISILNSELERLSLEKANFKTYYDTLDIARR 615

Query: 103 NGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                    L+      N     +       L  +    ++       T  N +  +  +
Sbjct: 616 FYPSLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRMVVYGKY 675

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +            F+ +       + L  +    +  G  ++   + ++ +    +   
Sbjct: 676 IKK-----------FEPIYEEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIKINN 724

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYL 245
           L E  V   +   +       L   L
Sbjct: 725 LREFFVIAKEIENKEISSRDNLIELL 750


>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
 gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
          Length = 397

 Score = 37.4 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 57/224 (25%), Gaps = 23/224 (10%)

Query: 28  AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86
             + L    +D E + L D        P   +  L+D +V+ V H    +  +F+   G 
Sbjct: 64  PQLGLIQL-FDGETLSLIDPIALDEMTP--FVGLLKDTSVLKVLHACGEDLEVFQNAFG- 119

Query: 87  DIPSKRWICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSID 141
                  + T ++A   G    L           +      ++            +    
Sbjct: 120 -CTPTPMVDTQIMAAFLG--HGLSTGFAALVSEFVGVDLDKSESRT-----DWLARPLSQ 171

Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
                           L   Y K   +     +       + +  +    +  N     +
Sbjct: 172 ----KQLDYAAADVHYLMPMYNKILEKVMEAGWWE-AAQQESDLQVAKRIRKANPDNAYL 226

Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245
           D+    +L+       + L    +K       +    +  +   
Sbjct: 227 DIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFVFKEQDLW 270


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 47/204 (23%), Gaps = 44/204 (21%)

Query: 3   KLFIDIETRSPQ----PLPKVGVWAYAEQAVITL----CAYAWDD-------------EP 41
            +  D ET         + ++      E   I           D                
Sbjct: 512 IVVFDTETTGLDVFTDDIIEISAIKIKE-GKIVGEPLDLYIYTDKPILQKLGTKENPLYE 570

Query: 42  VKLWDRTEQS-----AMPSDLLQYLRDETVMCVAHNSLFERI----LFKKTLG--IDIPS 90
           +                 +  ++++ +     + HN  ++        K+     +D  S
Sbjct: 571 IYHKKLASGELLKANDALNKFIEFVDNS--TLIGHNINYDYHILDNCLKRYANDCMDNHS 628

Query: 91  KRWICTSVLARTNGL---PSSLKNACLALNFS----EHLTKMEEGKALIARFCKGSIDSP 143
            ++  +  L R          L+                      KA I+     +  + 
Sbjct: 629 YKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDV--KATISLINYCADKAQ 686

Query: 144 PYDCTRANHVQAWQLFGEYCKRDV 167
                + + +   Q+F    K   
Sbjct: 687 LVVEKQMDFLNHKQVFKVANKLRA 710


>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 223

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK--------RWI 94
            L D+ E   + ++ L ++  +    VAHN+ F+        G+ +           +  
Sbjct: 56  FLVDKPEYQDVHAEFLDFI--KGAELVAHNAPFDTGFMDYEFGM-LDPTIGKTDDYCKVT 112

Query: 95  CTSVLARTN--GLPSSLKNACLALNFS 119
            T  +A+    G  ++L   C      
Sbjct: 113 DTLAMAKKIFPGKRNNLDVLCDRYGID 139


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 72  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 130 KKYMKHATNHKLETLKRMLGIR 151


>gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909]
          Length = 184

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 67  MCVAHNSLFERILF---KKTLGIDIPSKRWICT-SVLARTNG-LPSSLKNACLALNFS 119
             VAHN+ F+  +     K+L ID PS  + C+  +  RT       LK+     +  
Sbjct: 84  PVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQLAKRTINAYRYGLKHLMNHYHLD 141


>gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 277

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 24/122 (19%)

Query: 2   SKLFIDIETRS----PQPLPKVGVWAYAEQA-VITLCAYAWDDEPVKL------------ 44
             +  D ET         + ++G   Y E    +        ++   +            
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 45  WDRTEQSAMPSDLLQYLRD--ETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSV 98
            D   Q  +  ++L    D  +  + VAHN+ F+     +        D+ + R   T  
Sbjct: 64  ADLLNQPTI-EEILPDFLDFIKGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTLA 122

Query: 99  LA 100
            +
Sbjct: 123 ES 124


>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
 gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
          Length = 940

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 21/154 (13%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLPS 107
             + + +   L D   + VAHN  F+ I      +  G+     + I T  LA+      
Sbjct: 77  EDVAATIYNLLED--CIIVAHNIQFDYIFLSGELQRCGMPALKNKGIDTVELAQILLPTE 134

Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167
           S       LN             L+++F     +    D   A   + +       K   
Sbjct: 135 S----SYRLN------------DLVSKFNIEHTNPHQADSDAAVTAELFLELKNKLKELP 178

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
             T E    +      E   +  +     +  R+
Sbjct: 179 LVTVEKMVEISEHLTMETSYFFENFLAEMKQERL 212


>gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
          Length = 193

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 25/164 (15%)

Query: 6   IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65
            D ETR      K   +       I+L   + D        R  +  +P  L ++L +E 
Sbjct: 50  FDTETR--PSFKKGQRY------KISLMQISTD--EACFLFRLNRIDIPKVLEEFLANEK 99

Query: 66  VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHL 122
           V  +  +   +    +K    DI    ++   +           +SL+     L   +  
Sbjct: 100 VQKIGLSLRDDFGAMQKRK--DIQPANFLD--LQNYVGQFGIEDASLQKIYAILFNKKIS 155

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166
                      R      D       +   + AW     Y +  
Sbjct: 156 --------KGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLK 191


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 57/204 (27%), Gaps = 15/204 (7%)

Query: 48  TEQSAMPSDLLQYLRDETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLARTN 103
            ++  +  + ++Y   +  + V HN  ++  +     +++       K +  T  + R  
Sbjct: 568 EDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTLDIYRRF 625

Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160
               +   L+N     +     +      A+      G +     +              
Sbjct: 626 YPGNINYKLENLSKVYDTKHKPSHD----AMDDIIATGELLVRAINEKIRETSMERMTLM 681

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
               +   A  +    L  +++ +R   L+   +N  G+ I         +      + L
Sbjct: 682 SKHLKAFTAISKKLNELFQIAESKRPYELVACVMN--GFNIKSMYAGDENKEKLNRLRDL 739

Query: 221 DEDIVKLTDGIIRSSRQTYALRMY 244
                 L D    +      +   
Sbjct: 740 YALFRDLDDKSKGNRDALLDIIRI 763


>gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 36/319 (11%), Positives = 85/319 (26%), Gaps = 58/319 (18%)

Query: 3   KLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDD-----EPVKLWDRTEQSAM 53
            + +D ET         + ++G   Y ++       +  +      E +   +  E S +
Sbjct: 61  FVALDFETTGLDYRNDKIVEIGAVKYKDEKETDKFHFLINPHIHIPEKITKINGIEDSMV 120

Query: 54  PS-----DLLQYLRD--ETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGL 105
                  +++  L D    +  V HN+ F+     +            I T  ++R    
Sbjct: 121 KDSPSINEVIPKLIDFMGNLPIVVHNARFDIDFLDENMSDNKYRGNSVIDTLSISRKMFE 180

Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165
                      N      K      L +                 +   A +++ +YC+ 
Sbjct: 181 NID--------NHRLQTIKDYLKIDLNSH------------RAIDDAKVAAEIYLKYCRE 220

Query: 166 ------DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
                 D +  R+   ++   +  + D    D       Y++  +      +   +   K
Sbjct: 221 GYPIKKDYDKLRKQKNKINLETSFKYDPIDEDIYKCFIAYKLGYERRDGTLKQFHKIEDK 280

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLI------------TGIDLVDMSEGTLKSILSH 267
           + E   +      +++ +T    +                  G  +    +  L+     
Sbjct: 281 ISEICKEHGGRYFKTAAKTAKFAIIFDDKSMFYTYIKELRDKGYKVTSFDKA-LEYF--G 337

Query: 268 SNITQLAKDLILNRLASSG 286
                  K L   R     
Sbjct: 338 IADMWDIKALYELRDEYMK 356


>gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 390

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL 57
           + +D E     T                   + L    +D   V L D        P  L
Sbjct: 40  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALIDPLGISDWSP--L 81

Query: 58  LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108
              LRD  +    H    +  +F    G ++  +  I T +LA   G P S
Sbjct: 82  KAVLRDTGITKFLHAGSEDLEVFLNAFG-EL-PEPLIDTQILAAFCGRPLS 130


>gi|321452163|gb|EFX63618.1| hypothetical protein DAPPUDRAFT_335271 [Daphnia pulex]
          Length = 1122

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 56/221 (25%), Gaps = 39/221 (17%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            LF D ET     +     +  +                +  W   +   +   ++    
Sbjct: 445 ILFFDFETYKGN-MQHYLPFMCSAIG---------GSGDLYCW-LYKSELLSDQVVS-FG 492

Query: 63  DETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--------KNAC 113
           D   + + HNS  ++R   K+    +   KR + T            +         +  
Sbjct: 493 DAVKLYIGHNSVAYDRRFVKEFYEFNHD-KRMLDTMSFYYVL---YGMSGTQTKIYDSL- 547

Query: 114 LALNFSEHLTKMEE---GKALIARFC-----KGSIDSPPYDCTRANHV-----QAWQLFG 160
             L  +   TK       K L    C     K   D        A        +      
Sbjct: 548 KRLEHAPTWTKHTCPANLKDLANFLCGIKLDKDIKDLWVTKKKEAPKPFSVITENLNDIW 607

Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201
            Y   D  AT E++K+          L  L   +      I
Sbjct: 608 RYAVMDTYATLEVYKKEYAEIAKFPSLIYLVGQLERSTQMI 648


>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 433

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 24/119 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT 123
               + H+SL +   F +   I +  K    T + AR  GL    L              
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHYL------ 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   I    + S     Y     +          Y   DVE   EL   +     
Sbjct: 146 -------GITLAKEHSAADWSYRPLPRDW-------RNYAALDVEVLIELETLMRRDLK 190


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT--LCAYAWDDEPV-------------K 43
            + ID ET    P    + +V    Y     +     +Y   + P+             +
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNH-ELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLA 100
           + D      +    L +L    V+ VAHN+ F+    K     LG+  P  + I T  LA
Sbjct: 69  VSDAPTIEEVLPLFLAFL-HTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RT-NGLPSSLKNACLALNFS 119
                +     L+     L   
Sbjct: 127 KKYMKHATNHKLETLKRMLGIR 148


>gi|328776161|ref|XP_391887.3| PREDICTED: probable exonuclease mut-7 homolog [Apis mellifera]
          Length = 954

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 21/165 (12%)

Query: 25  AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-----YLRDETVMCVAHNSLFERIL 79
            +Q  + L   A  D  V + D T      ++L          ++ ++ +      +  +
Sbjct: 428 TKQTELALIQIATKDN-VYIIDVTTMGNKFTELWAKLALVLFENKNILKLGFGIAQDMTV 486

Query: 80  FKKTLG----IDIPSKRWICT------SVLARTNGLPSSLKNACLALNFSEHLTKMEEGK 129
            + +L     I I  + ++         V       P    +     N S+   ++  G+
Sbjct: 487 IRSSLPALSKIKIYGQGYLDIVNLWKKLVEDYKFVFPHESDDQFTKKNLSKL-VELCLGQ 545

Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174
            L       + +  P           +     YC  ++ AT E+ 
Sbjct: 546 KLNKSDQFSNWEQRPLRE----SQIIYAALDAYCLLEIYATLEIQ 586


>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
 gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
          Length = 433

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 24/119 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT 123
               + H+SL +   F +   I +  K    T + AR  GL    L              
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHYL------ 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   I    + S     Y     +          Y   DVE   EL   +     
Sbjct: 146 -------GITLAKEHSAADWSYRPLPRDW-------RNYAALDVEVLIELETLMRRDLK 190


>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 934

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 34/149 (22%)

Query: 2   SKLFIDIETRS-----PQPLPKVGVWAYAEQAVITLC--AY---------------AWDD 39
             + +D+ET        +           E   I     ++                 D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 40  EPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWIC 95
             VK     +  + M  +LLQ         VAHN  F+        +  G        + 
Sbjct: 64  SMVKQAPLFQDVAPMVGELLQ-----GAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVD 118

Query: 96  TSVLARTNGL---PSSLKNACLALNFSEH 121
           T  LA+          L++          
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHD 147


>gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 231

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 21/121 (17%)

Query: 11  RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70
               P   +   AY     I   + ++        D      +  ++  ++++  ++   
Sbjct: 50  YYLYPQRSIESSAY----KIHGISESFLSNKPTFKD------IYKEIFNFIKNSEIIV-- 97

Query: 71  HNSLFERILFKK---TLGIDIPSKRWI----CTSVLARTN--GLPSSLKNACLALNFSEH 121
           HNS F+          L I I   +       T  +AR    G  ++L   C     +  
Sbjct: 98  HNSNFDISFLDYEFFLLNIGINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNI 157

Query: 122 L 122
            
Sbjct: 158 N 158


>gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 45/165 (27%), Gaps = 55/165 (33%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKL------ 44
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHKIRHQ 89

Query: 45  --WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----KKTLGIDIP--------- 89
              D  ++      LL+++       V ++  +++ +     +K LG  +P         
Sbjct: 90  DLVDGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACQKQLGFPLPNPLIEVSQI 147

Query: 90  ---------SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
                       +              SL   C  L+        
Sbjct: 148 YHDKLEKHLPNAYFD-----------LSLDAICRHLDLPMQDKHD 181


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 51  SAMPSDLLQYLRDETV-MCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
             +   L Q+       + VAHN+ F+           GI+      + T  LAR     
Sbjct: 60  DPIDVVLKQFKEWSGDNILVAHNASFDMGFINTAYEKVGIEKAKNAVVDTLELARFLYPH 119

Query: 107 ---SSLKNACLALNF 118
                L       N 
Sbjct: 120 FKNHRLNTLTKKFNI 134


>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
          Length = 230

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 39/155 (25%)

Query: 2   SKLFIDIETRS------------------PQPLPKVGVWAYAE-QAVITLCAYAWDDEPV 42
            ++FID ET                     + +    +  Y      +   A A      
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAGALAIHGLTN 62

Query: 43  KLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---------IDIPSKR 92
           +   D+        +++++LR   V  + HN+ F+       LG         ++    R
Sbjct: 63  EFLADKPLFEDKVDEMIEFLRGAEV--IIHNAAFDVPFINWELGLLRNNKYGTLEQNVAR 120

Query: 93  WICTSVLARTNGLPS-----SLKNACLALNFSEHL 122
            + +  LAR           +L   C         
Sbjct: 121 IVDSLDLAR---KKHPLQKNNLDALCKRYQIRNDH 152


>gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21]
 gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21]
          Length = 411

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 4/73 (5%)

Query: 28  AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-RDETVMCVAHNSLFERILFKKTLGI 86
             + L   A ++E     D          L   L  +E V+ V H    +  +     G 
Sbjct: 41  PELCLVQIA-NEEEAAAIDPLADGIDLQPLWDLLCDNEEVLKVFHAGGQDVEIVYNFTGK 99

Query: 87  DIPSKRWICTSVL 99
                    T + 
Sbjct: 100 T--PHPIFDTQIA 110


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 51  SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
             +   L ++       + VAHN+ F+           GI       + T  LAR     
Sbjct: 60  DPIDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPH 119

Query: 107 ---SSLKNACLALNF 118
                L       N 
Sbjct: 120 FKNHRLNTLTKKFNI 134


>gi|300717064|ref|YP_003741867.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661]
 gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661]
          Length = 221

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 69  VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKME 126
           VAHN+ F+R +  +  G       WICT  LAR    G+  S +     L          
Sbjct: 78  VAHNASFDRRMLPEMHG------EWICTMTLARGLWPGIKYSNQALRETLKLEVTPPADL 131


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1444

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 30/146 (20%)

Query: 3   KLFIDIETRS----PQPLPKVGVWAYAEQAVI-TLCAY---------------AWDDEPV 42
            +  D+ET         + ++G         +  L  +               +  +E +
Sbjct: 404 YVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGRLQTFIKSPKPISKKITELTSITNEDI 463

Query: 43  KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVL 99
           +             L+++  D+  + +AHN  F+  +  K L   G    S  WI T  L
Sbjct: 464 RNAP--TIEEFMPRLMEFFGDD--LLIAHNGRFDIGMLDKALERMGKSPISNPWIDTLPL 519

Query: 100 ARTNGL---PSSLKNACLALNFSEHL 122
           +R          L   C   +     
Sbjct: 520 SRRLIPLQRSYRLGAVCRFYHIPYDT 545


>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
 gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 433

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 24/119 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT 123
               + H+SL +   F +   I +  K    T + AR  GL    L              
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHYL------ 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   I    + S     Y     +          Y   DVE   EL   +     
Sbjct: 146 -------GITLAKEHSAADWSYRPLPRDW-------RNYAALDVEVLIELETMMRRDLK 190


>gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590]
 gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590]
          Length = 186

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 23/138 (16%)

Query: 3   KLFIDIETR-------SPQPLPKVGVWAYAEQAVITL-----CA---YAWDD-EPVKLWD 46
            + +D ET            + KV      E     +      +          P  +  
Sbjct: 8   FVALDFETANGKRTSICSVGMVKVIDNQITESFHTLINPQDYFSKKNINVHGINPEDVIH 67

Query: 47  RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF---KKTLGIDIPSKRWICT-SVLART 102
             +   +   +LQ++ +  +  VAHN+ F+  +     K  GI  P   + C+  +  RT
Sbjct: 68  APQFDYVFPYMLQFIAN--LPVVAHNAAFDMNVLHQSLKQAGIITPDLTYFCSYQLAKRT 125

Query: 103 NGLP-SSLKNACLALNFS 119
              P   LK+     N  
Sbjct: 126 IDAPRYGLKHMMDFYNLD 143


>gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 385

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 30/229 (13%)

Query: 4   LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63
           + +D E      +    ++       + L    + D  V L D          +   L D
Sbjct: 36  VALDTE-----FVRVRTLY-----PKLGLIQMYFGD-RVALIDPLPIQDFSPFIK-LLAD 83

Query: 64  ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123
             ++ + H    +  +F+         +    T V+A   G   S   A L  ++ +   
Sbjct: 84  TNLVKILHACSEDLDVFQHYFQQ--LPRPMCDTQVMAHFLGFAGSTGFATLVQHYFQI-- 139

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---------ELF 174
           ++++G +      +   D+             W L   Y +   + T+         E  
Sbjct: 140 EIDKGASRTDWLARPLSDTQLQ----YAAADVWYLLPLYEQMQQQLTQTEWQSVVENECE 195

Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223
             L   +   +D       I    ++++   +++L+ L     ++  + 
Sbjct: 196 FLLNKRAQTTKDPDSAYFAI-PNAWKLNRLELMRLKLLAKWRMEEAMKR 243


>gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
 gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
          Length = 449

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 7/86 (8%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L     +     L D      +   +   L    V  + H +  +     +   + +   
Sbjct: 86  LVQIRREGSGTWLIDPEPFGDL-QIINDALE--GVEWILHAASQDLPCLSE---LGMWPD 139

Query: 92  RWICTSVLARTNGLPS-SLKNACLAL 116
           +   T + AR  GLP   L      L
Sbjct: 140 KLFDTELAARLAGLPRVGLAAVIEQL 165


>gi|154687698|ref|YP_001422859.1| YwtE [Bacillus amyloliquefaciens FZB42]
 gi|154353549|gb|ABS75628.1| YwtE [Bacillus amyloliquefaciens FZB42]
          Length = 285

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 35/242 (14%)

Query: 1   MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M  + ID++         +     A  ++A       A                   D+ 
Sbjct: 1   MKLIAIDLDGTLLNSDSVISPENRAALQRADEAGILVAICTGRATF-----------DVK 49

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
             L+D  +  +A N            G  +  K +    +++R      + K+    L  
Sbjct: 50  ALLKDLDIPIIAAN------------GGTVHDKGYR---LVSRLLMDQQAGKDIAAYLTD 94

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRL 177
            +   ++     L++ F   S      D  ++ +  +      E  K     T+     +
Sbjct: 95  KDIYFEVYTDDHLLSPFDGESKLQAELDILKSANPKEDIHTLWEGAK-----TQFKQFGI 149

Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237
            P+ D +      +       +  D++ +   +E I     KL +         I  +  
Sbjct: 150 KPVQDIQAIFNGDEHVYKLLCFSFDMEKLRNAKEEIT-HHPKLSQTSSGKHIIEILPAGS 208

Query: 238 TY 239
             
Sbjct: 209 GK 210


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SSC/2]
          Length = 1470

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 2   SKLFIDIETR---SPQP-LPKVGVWAYAEQAVI-TLCAYAWDDEPVK------------- 43
           S +  DIET    S    + ++G     E   I    +   + E                
Sbjct: 443 SYVVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPERPIPYKITQLTTITDD 501

Query: 44  -LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPS-KRWICTSVLA 100
            + D      +    L++      + VAHN+ F+    +     +++P     + T  LA
Sbjct: 502 MVKDAGTIEEILPQFLKFCA--GSVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 559

Query: 101 RTNGLPSS---LKNACLALNF 118
           R          L N C  LN 
Sbjct: 560 RCLMGHLGKFTLDNICKHLNI 580


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 2   SKLFIDIETR---SPQP-LPKVGVWAYAEQAVI-TLCAYAWDDEPVK------------- 43
           S +  DIET    S    + ++G     E   I    +   + E                
Sbjct: 446 SYVVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPERPIPYKITQLTTITDD 504

Query: 44  -LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPS-KRWICTSVLA 100
            + D      +    L++      + VAHN+ F+    +     +++P     + T  LA
Sbjct: 505 MVKDAGTIEEILPQFLKFCA--GSVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 562

Query: 101 RTNGLPSS---LKNACLALNF 118
           R          L N C  LN 
Sbjct: 563 RCLMGHLGKFTLDNICKHLNI 583


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 17/185 (9%)

Query: 51  SAMPSDLLQYLRDETVMCVAHNSLFERILFK---KTLGIDIPSKRWICTSVLARTNGLPS 107
             +   ++++  D   + VAHN  F+  + +   K LG D       CT   +R      
Sbjct: 69  YEIAKQIIEFTED--CIFVAHNVGFDYGIIRHEFKLLGYDYRKAHL-CTVRASRYVIPDH 125

Query: 108 ---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164
              SL     AL          +G A         + +      +    +       +  
Sbjct: 126 ESYSLGKLTKALGIQLIGRHRAKGDAEATAHLFTLLHTTDSKGLQTFIQEEINPKILHPN 185

Query: 165 RDVEATRELFKR--LIPLSDGERDLW------LLDQTINDRGYRIDLDLVLKLQELIAQE 216
            D+E   E+  +  +    +    L        + + I      +       ++E IA+ 
Sbjct: 186 LDLETLEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHLKNVKTLKGSIMREEIARI 245

Query: 217 RKKLD 221
             +L 
Sbjct: 246 EFELT 250


>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
          Length = 433

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 24/119 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT 123
               + H+SL +   F +   I +  K    T + AR  GL    L              
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHYL------ 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   I    + S     Y     +          Y   DVE   EL   +     
Sbjct: 146 -------GITLAKEHSAADWSYRPLPRDW-------RNYAALDVEVLIELETMMRRDLK 190


>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
          Length = 433

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 24/119 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT 123
               + H+SL +   F +   I +  K    T + AR  GL    L              
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHYL------ 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   I    + S     Y     +          Y   DVE   EL   +     
Sbjct: 146 -------GITLAKEHSAADWSYRPLPRDW-------RNYAALDVEVLIELETMMRRDLK 190


>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 947

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 42/151 (27%), Gaps = 24/151 (15%)

Query: 32  LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91
           L   + +D+   L D        S L +     T++ + H +  +    ++   + +   
Sbjct: 296 LIQISTEDKD-YLIDALALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQR--DLSLYVV 352

Query: 92  RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150
               T   A+    P+ SL                      + +FC  + +         
Sbjct: 353 NMFDTHQAAKALQYPALSLAFL-------------------MKKFCNVTPNKQFQLADWR 393

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181
                 +    Y + D      ++K +    
Sbjct: 394 IRPLPDE-LKSYAREDTHYLIYIYKMMKREL 423


>gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 213

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 42/163 (25%), Gaps = 51/163 (31%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 32  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHKIRHQ 91

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIP----------- 89
           D  +  +    LL+ +        V ++  +++ +      + LG  +            
Sbjct: 92  DLVDGLSEKEALLKLIDFIGNRPLVGYHIRYDKKILDLACLRHLGFPLANPLVEVSQIYH 151

Query: 90  -------SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
                     +              SL   C  L+        
Sbjct: 152 DKLEKHLPNAYFD-----------LSLDAICRHLDLPIQDKHD 183


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 51  SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
             +   L ++       + VAHN+ F+           GI       + T  LAR     
Sbjct: 60  DPIDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPH 119

Query: 107 ---SSLKNACLALNF 118
                L       N 
Sbjct: 120 FKNHRLNTLTKKFNI 134


>gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 42/163 (25%), Gaps = 51/163 (31%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHKIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIP----------- 89
           D  +  +    LL+ +        V ++  +++ +      + LG  +            
Sbjct: 90  DLVDGLSEKEALLKLIDFIGNRPLVGYHIRYDKKILDLACLRHLGFPLANPLVEVSQIYH 149

Query: 90  -------SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125
                     +              SL   C  L+        
Sbjct: 150 DKLEKHLPNAYFD-----------LSLDAICRHLDLPIQDKHD 181


>gi|323489790|ref|ZP_08095015.1| putative oligoendopeptidase [Planococcus donghaensis MPA1U2]
 gi|323396528|gb|EGA89349.1| putative oligoendopeptidase [Planococcus donghaensis MPA1U2]
          Length = 599

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 15/174 (8%)

Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210
           N+ + W L   +          L   +        +   L Q       + D   V  L 
Sbjct: 4   NYPETWDLDTLFSGGSESQELRLH--MNQAVTMLTEFEKLVQKFKVPTVKEDAQNVYDLL 61

Query: 211 ELIAQERKKLDEDIVKLTDGIIRS------------SRQTYALRMYLFLITGIDLVDMSE 258
           E +++  + L +    +   + ++            +    A     F     DL    +
Sbjct: 62  EKMSEVMRHLSQSGAFIGCLMAQNTQDKKAGILESEAASLSARFQNSFQKIQQDLTKTED 121

Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312
                +L+   + +    L   R  +      K  ++  A+S+DG   G  Q Y
Sbjct: 122 AVWSELLNEDLLRKFTFVLNEWREEAKQLLSEKEESMITALSTDG-YHGWSQLY 174


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQAVIT-LCAYAWDDE---PVKLW--------- 45
            +  DIET    P    + ++G         I    +   +     P  +          
Sbjct: 422 FVVFDIETTGLNPQQDRITEIGAVK-VRNGQIVDRFSAFVNPGVSIPSFIVKLTGITNDM 480

Query: 46  --DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLAR 101
             D      + ++ +++++    + VAHN+ F+    K    I  +     ++ T  L R
Sbjct: 481 VKDAPPIEQVLNEFMEFIQ--GSVLVAHNANFDVGFIKHNAKIIGEKVKNPYLDTLELCR 538

Query: 102 TNGL---PSSLKNACLALNFS 119
                     L      L   
Sbjct: 539 KMFPELGRYKLNIVAKHLKIE 559


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 25/132 (18%)

Query: 2   SKLFIDIETRSPQP----LPKVG--------------VWAYAEQAVITLCAYAWDDEPVK 43
           + +++DIET         + ++G              +     +  I++ +   D +   
Sbjct: 11  NVIYLDIETTGLDETCSEIIEIGAVKVKNGVITTYNTLIRPRGRVPISIYSLCSDLKEAD 70

Query: 44  LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103
           L      +++  ++L++L D  +  + HN  FER        I       + +  LA   
Sbjct: 71  LLSARSLNSIKQEVLEFLED--LPLICHNGNFERKFLSFY--IPEIKNTIMDSMELAIIL 126

Query: 104 GL---PSSLKNA 112
                  +L + 
Sbjct: 127 EPWRKEYNLNSL 138


>gi|323457115|gb|EGB12981.1| hypothetical protein AURANDRAFT_19513 [Aureococcus anophagefferens]
          Length = 309

 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 8/138 (5%)

Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563
           +     + +   G+     +  +     V E   I+     ++    M     DV     
Sbjct: 178 KDRMDKFFSFIPGMNSRIGNHIDFPNYEVDELYEIARVMTRDL-EYDMSEEAGDVFKRYI 236

Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623
             RR+         +  N      M                 S DI    MK      + 
Sbjct: 237 -ERRMDMPFFSNARTVRNAMDRARMNSAIRIFDEAIAP--HSSGDITAAQMKEIAPADFQ 293

Query: 624 IVLTVHDEIVSETPDTPY 641
           I+L   DE   E PD   
Sbjct: 294 IIL---DEA-LEAPDDAI 307


>gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH]
 gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH]
          Length = 293

 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 21/102 (20%)

Query: 1   MSKLFIDIETRS---PQPLPKVGVWAYAEQAVITLC---------AYAWDDEPVKLWDRT 48
           M  + +D ET        + ++      E   I              +++   V      
Sbjct: 1   MKIVILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNE 60

Query: 49  EQSAMP--------SDLLQYLRDETVMCVAHNSLFERILFKK 82
                P          L + L     + V HN+ F+  + KK
Sbjct: 61  MVEDKPLIKHTESYKRLKE-LNSPENLLVIHNAKFDLDMLKK 101


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 55/206 (26%), Gaps = 19/206 (9%)

Query: 48  TEQSAMPSDLLQYLRD-ETVMCVAHNSLFERIL----FKKTLGIDIPSKRWICTSVLART 102
                    L  +L   +  + V HN  F+  +     ++        K +  T  +AR 
Sbjct: 556 ENGENKKVVLKDFLEFIKDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLDIARR 615

Query: 103 NGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159
                    L+      N     +       L  +    ++       T  N +  +  +
Sbjct: 616 FYPSLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRMVVYGKY 675

Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219
            +            F+ +       + L  +    +  G  ++   + ++ +    +   
Sbjct: 676 IKK-----------FQPIYKEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIKINN 724

Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYL 245
           L E  V   +   +       L   L
Sbjct: 725 LREFFVIAKEIENKEISSRDNLIELL 750


>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 433

 Score = 37.0 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 24/119 (20%)

Query: 65  TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT 123
               + H+SL +   F +   I +  K    T + AR  GL    L              
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHYL------ 145

Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
                   I    + S     Y     +          Y   DVE   EL   +     
Sbjct: 146 -------GITLAKEHSAADWSYRPLPRDW-------RNYAALDVEVLIELETMMRRDLK 190


>gi|254495979|ref|ZP_05108887.1| polyketide synthase, type I [Legionella drancourtii LLAP12]
 gi|254354857|gb|EET13484.1| polyketide synthase, type I [Legionella drancourtii LLAP12]
          Length = 3763

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 9/145 (6%)

Query: 97  SVL--ARTN-GLPSSLKNACLALNFSEHLTKM---EEG---KALIARFCKGSIDSPPYDC 147
            +   A      P+SL + C  L       K      G   + LI +           D 
Sbjct: 477 MLANFAYYLRESPASLHDICSTLINCRDHYKFRCAIIGNDKETLIQKINSEDYVLKKVDR 536

Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207
            +     A+     Y      A   L       +     L+  ++       R++   V 
Sbjct: 537 KQDIQKVAYDAQKIYAAYLAGANLRLEGTDAQYNQVALPLYPFERQSYWHESRVNKTNVH 596

Query: 208 KLQELIAQERKKLDEDIVKLTDGII 232
            L  L  Q  ++  E I       I
Sbjct: 597 WLDTLYQQSPEEQIETIRAKIAEQI 621


>gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 209

 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 46/153 (30%), Gaps = 31/153 (20%)

Query: 3   KLFIDIETRSPQP----LPKVGVWAYAEQ-------AVITLCA-YAWDDEPVKLW----- 45
            + +D ET S  P    L  +      +          + L A  + D   VK+      
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLRAPQSLDSGSVKIHKIRHQ 89

Query: 46  DRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILF----KKTLGIDIPS------KRWI 94
           D  +  +    LL+ L        V ++  +++ +     ++ LG  +P+      + + 
Sbjct: 90  DLADGISEKEALLKLLAFIGNRPLVGYHIRYDKKILDLACQRQLGFPLPNPLIEVSQIYH 149

Query: 95  CTSVLARTNG--LPSSLKNACLALNFSEHLTKM 125
              +           SL   C  L         
Sbjct: 150 D-KLERHLPNAYFDLSLDAICKHLELPIQDKHD 181


>gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 905

 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 24/173 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPSS 108
            +  D+ + L+D   + VAHN  F+    KK      I    K+ + T            
Sbjct: 73  EIADDIYEQLKD--CIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTL----------- 119

Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDV 167
                     +    K  +   L         ++   D           + F ++    +
Sbjct: 120 -----ELFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAFKKFESLPI 174

Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220
           +  ++L+  L      +    L +       + ID     + +++I ++++ L
Sbjct: 175 DTLKQLYY-LSKHLKYDLFNILFEMVRQHHNHDIDYQYA-QFEQIIYKKQQDL 225


>gi|312131262|ref|YP_003998602.1| 3'-5' exonuclease, polb [Leadbetterella byssophila DSM 17132]
 gi|311907808|gb|ADQ18249.1| 3'-5' exonuclease, PolB [Leadbetterella byssophila DSM 17132]
          Length = 232

 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 58/231 (25%), Gaps = 69/231 (29%)

Query: 1   MS-KLFIDIETRSP----QPLPKVG------------------------VWAYAEQAVIT 31
           M   LF+DIET S       LP+                             +AE   I 
Sbjct: 1   MKDILFLDIETVSLTEDFNDLPERLQEHWQKKVQHMKRAEPVEDVYVERAAIFAEFGKII 60

Query: 32  LCAYAWDDE---PVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-FERILFKKT 83
                 +      V      ++  +     + +      + ++  AHN   F+     + 
Sbjct: 61  CIGVGGETSGDLKVSCLYHEDERTLLLQFKELIERHPAGKRLILCAHNGKEFDFPYLCRR 120

Query: 84  L---GIDIP-------SKRWI----CTSVLARTNGLPS--SLKNACLALNFSEHLTKMEE 127
           +   GI +P        K W      T  + +        SL      L        ++ 
Sbjct: 121 MIIHGIPLPDVLQMSGKKPWEIPHLDTLEMWKFGDYKHFTSLDLLAAVLGIEGSKGSLDG 180

Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
            K                                YC  DV    ++F+RL 
Sbjct: 181 SK----------------VNAAYYLEDRITDIIHYCMEDVVVLAQVFRRLR 215


>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 238

 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 52  AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICT----SVLARTN- 103
            +  + L+++R      + HN+ F+         +   DIP     CT     +LAR   
Sbjct: 64  DITPEFLEFIR--GAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121

Query: 104 -GLPSSLKNACLALNFSEHL 122
            G  ++L   C         
Sbjct: 122 PGKRNNLDALCDRYQIDNTK 141


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 51  SAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLP 106
             +   L ++       + VAHN+ F+           GI       + T  LAR     
Sbjct: 60  DPIDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPH 119

Query: 107 ---SSLKNACLALNF 118
                L       N 
Sbjct: 120 FKNHRLNTLTKKFNI 134


>gi|206901926|ref|YP_002251415.1| hypothetical protein DICTH_1602 [Dictyoglomus thermophilum H-6-12]
 gi|206741029|gb|ACI20087.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 164

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 24/182 (13%)

Query: 1   MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           M   + ++DIET         G+        +    Y  + E             P +L 
Sbjct: 1   MKVYEAYLDIETT--------GLSPIYSDITVIGI-YLENSEDSIFIQLIGDDITPYNLS 51

Query: 59  QYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACLAL 116
             +  +      +N   F+       LGI++    +           GL   LK     L
Sbjct: 52  YIME-KVHTIYTYNGSRFDLPFINAKLGINLEDYAFHEDLMYRCWKRGLYGGLKKVEERL 110

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                  K  +G+               Y   R N + A +L  EY K DV   + L ++
Sbjct: 111 GIER-KLKEVDGR---------MAVILWYKYIRHNDINALRLLLEYNKEDVMNLKILKEK 160

Query: 177 LI 178
           L 
Sbjct: 161 LY 162


>gi|300717019|ref|YP_003741822.1| Ribonuclease D [Erwinia billingiae Eb661]
 gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661]
          Length = 373

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 52/204 (25%), Gaps = 46/204 (22%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-- 56
           L +D E     T                   + L    +D E + L D      +     
Sbjct: 25  LALDTEFVRTRTYY---------------PGLGLIQM-YDGENIALID---PLPITEWAP 65

Query: 57  LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116
               L DE V+   H    +  +F      D+     I T +LA   G P S        
Sbjct: 66  FRDLLLDEKVIKFLHAGSEDLEVFLHEY--DVLPVPMIDTQILAAFTGRPLS-------- 115

Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176
                      G A I     G         T        +   +Y   DV     +  +
Sbjct: 116 ----------CGFATIVESFTGIALDKSESRTDWLARPLTEKQCQYAAADVFYLLPIAHK 165

Query: 177 LIPLSDGERDLWLLDQTINDRGYR 200
           L+  ++    +       +    R
Sbjct: 166 LLAEAEESGRINAALNECSLLCQR 189


>gi|262212055|gb|ACY35644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 16/173 (9%)

Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418
            +    R   + S  + +V ADLAGIE R+L+           + NG    +        
Sbjct: 7   PSDSRFRELSLPSPNQVMVGADLAGIELRMLSHF------PARYDNGRYADILLNGDIHQ 60

Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478
              DK+    R + K +  A  Y  G +                 +  +      +    
Sbjct: 61  VNADKI-GISRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAHIEAIDG 119

Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK-------HQGVLQLWKDL 524
               L    +  E      L G   +++  +           +  +L     +
Sbjct: 120 LDKLLEAIKKASERGFIKALDGR--KIIVDSPHKALNYCLQGNPAILAKRWMV 170


>gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
 gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
          Length = 834

 Score = 37.0 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 42/149 (28%)

Query: 2   SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAMPSDLL 58
               ID+E  S       G  A   Q  I +     +   +      D      +   + 
Sbjct: 22  KYAVIDLEATS------AGTAAKIIQVGIVI----VEGGKITNTYQTDVNPHEDLSDHIK 71

Query: 59  -------QYLRD---------------ETVMCVAHNSLFERILFKKTL---GIDIPSKRW 93
                  Q L                 +  + VAHN  F+  L  + L   G ++ + R 
Sbjct: 72  LLTGISDQQLASAPEFSQIAGTIFDLIKDCIFVAHNVKFDANLLAEALFFEGFELRTPRV 131

Query: 94  ICTSVLART---NGLPSSLKNACLALNFS 119
             T  LA+    +    +L      LN  
Sbjct: 132 -DTVELAQVFFPHLEKYNLTYLSTELNLE 159


>gi|325972527|ref|YP_004248718.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
 gi|324027765|gb|ADY14524.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
          Length = 294

 Score = 37.0 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 84/300 (28%), Gaps = 38/300 (12%)

Query: 3   KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62
            + +D E        +  +  Y E   + L    +D     L D    S     L  +L 
Sbjct: 27  TVAMDFE-------GEFNLHIYGEH--LCLIQL-FDGSAYALVDPFTLSK--EALKAFLE 74

Query: 63  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122
           D +++ V  +   +  L +K   I +         + A   G   +L             
Sbjct: 75  DASLLKVMFDCASDSALVRKQYDILLDG--VYDIRIAALALGYIGNLTGLVERYIPEAEK 132

Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182
             +   K       K  + +      +++ ++       Y   DVE    L   L    +
Sbjct: 133 PNLSSKK-------KNQMTNWLIRPLKSDQIE-------YALSDVEHLLVLKDILDGEVE 178

Query: 183 GERDLWLLDQTINDRGYRI--DLDLVLKLQ--ELIAQERKKLDEDIVKLTDGIIRSSRQT 238
            +     +   +   G     D     K    + +++E K   +      D + R     
Sbjct: 179 KKGLTEKVALEMLQAGKSKGPDKPGWTKFSSWKYLSREEKVFLKHFFIARDELARKYNVP 238

Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298
                 L     +++      +             AK L      ++   I K+N  SE 
Sbjct: 239 AV--RILEKHLLLEMAKDVPSSDADF-HVYCNNCTAKKLTE---LTAKLKIAKINAFSEL 292


>gi|119945380|ref|YP_943060.1| ribonuclease D [Psychromonas ingrahamii 37]
 gi|119863984|gb|ABM03461.1| ribonuclease D [Psychromonas ingrahamii 37]
          Length = 369

 Score = 37.0 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 69/225 (30%), Gaps = 48/225 (21%)

Query: 4   LFIDIE-----TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58
           + +D E     T +      +G+   ++   ITL       +P+ + D +          
Sbjct: 24  ISLDTEFVRTRTYAAN----LGLLQISQNTQITLI------DPIAVGDLSS-------FW 66

Query: 59  QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118
           Q + ++ +  + H S  +  + +   G D+       T +      + +SL         
Sbjct: 67  QAIDNKNI--ILHASSEDLEIIRDHKG-DLN-FTLFDTQIACSFLNMGASL--------- 113

Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178
                    G A +    +  I       T        +    Y   DV   +   ++L 
Sbjct: 114 ---------GYAKMVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQ 164

Query: 179 PLSDGERDLWLLDQTIN----DRGYRIDLDLVLKLQELIAQERKK 219
              + ++     +Q        +  + D D   KL   + +  ++
Sbjct: 165 QQLENKKMFPFFEQECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQ 209


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.131    0.368 

Lambda     K      H
   0.267   0.0401    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,738,105,743
Number of Sequences: 13984884
Number of extensions: 228320158
Number of successful extensions: 664416
Number of sequences better than 10.0: 7760
Number of HSP's better than 10.0 without gapping: 3859
Number of HSP's successfully gapped in prelim test: 3901
Number of HSP's that attempted gapping in prelim test: 620977
Number of HSP's gapped (non-prelim): 13267
length of query: 675
length of database: 4,792,584,752
effective HSP length: 146
effective length of query: 529
effective length of database: 2,750,791,688
effective search space: 1455168802952
effective search space used: 1455168802952
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 85 (37.4 bits)